Query 013574
Match_columns 440
No_of_seqs 130 out of 1403
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 05:13:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013574.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013574hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0065 LeuC 3-isopropylmalate 100.0 3E-117 6E-122 892.5 32.3 342 67-423 1-349 (423)
2 TIGR02083 LEU2 3-isopropylmala 100.0 3E-115 6E-120 896.8 34.9 342 69-424 1-347 (419)
3 TIGR01343 hacA_fam homoaconita 100.0 3E-113 7E-118 881.3 34.4 339 70-424 1-342 (412)
4 PRK00402 3-isopropylmalate deh 100.0 8E-113 2E-117 879.9 34.9 342 67-424 1-345 (418)
5 TIGR02086 IPMI_arch 3-isopropy 100.0 1E-112 3E-117 877.1 33.2 337 69-423 1-340 (412)
6 PRK12466 isopropylmalate isome 100.0 2E-110 5E-115 873.6 34.4 342 67-424 2-396 (471)
7 TIGR00170 leuC 3-isopropylmala 100.0 1E-109 2E-114 867.7 33.9 342 67-424 1-394 (465)
8 PRK05478 isopropylmalate isome 100.0 5E-109 1E-113 863.2 33.3 342 67-424 1-394 (466)
9 cd01583 IPMI 3-isopropylmalate 100.0 4E-106 8E-111 823.7 31.1 312 97-423 1-315 (382)
10 TIGR00139 h_aconitase homoacon 100.0 2E-104 3E-109 858.0 34.0 340 68-423 1-385 (712)
11 TIGR01342 acon_putative aconit 100.0 5E-104 1E-108 853.2 34.3 337 70-424 1-341 (658)
12 PRK07229 aconitate hydratase; 100.0 1E-103 3E-108 850.8 33.9 340 67-424 1-344 (646)
13 cd01585 AcnA_Bact Aconitase ca 100.0 9E-104 2E-108 804.5 30.7 311 96-424 1-315 (380)
14 PF00330 Aconitase: Aconitase 100.0 2E-104 4E-109 830.5 21.8 341 70-424 1-398 (465)
15 cd01581 AcnB Aconitate hydrata 100.0 5E-103 1E-107 809.6 31.1 329 71-424 1-372 (436)
16 TIGR01340 aconitase_mito aconi 100.0 8E-102 2E-106 842.9 34.5 341 67-424 18-401 (745)
17 PRK11413 putative hydratase; P 100.0 1.1E-99 2E-104 823.9 31.7 336 66-424 32-408 (751)
18 cd01584 AcnA_Mitochondrial Aco 100.0 9E-100 2E-104 781.9 28.9 311 97-424 1-342 (412)
19 PRK09238 bifunctional aconitat 100.0 6.6E-96 1E-100 795.9 33.0 342 57-423 359-744 (835)
20 cd01582 Homoaconitase Homoacon 100.0 7.9E-96 2E-100 741.2 28.5 284 98-424 2-297 (363)
21 TIGR00117 acnB aconitate hydra 100.0 1.2E-94 2.6E-99 784.3 32.2 338 61-423 364-744 (844)
22 PLN00094 aconitate hydratase 2 100.0 1.3E-92 2.9E-97 767.7 31.3 342 57-423 432-818 (938)
23 cd01351 Aconitase Aconitase ca 100.0 3.6E-92 7.8E-97 724.2 28.2 311 97-424 1-323 (389)
24 PRK09277 aconitate hydratase; 100.0 2.5E-88 5.3E-93 741.2 30.2 338 85-424 74-483 (888)
25 PRK12881 acnA aconitate hydrat 100.0 1E-87 2.2E-92 737.4 29.7 338 85-424 73-484 (889)
26 PTZ00092 aconitate hydratase-l 100.0 2E-87 4.3E-92 734.7 30.1 356 67-424 61-497 (898)
27 TIGR01341 aconitase_1 aconitat 100.0 3.1E-87 6.6E-92 731.9 27.8 341 82-424 53-473 (876)
28 PLN00070 aconitate hydratase 100.0 7.4E-87 1.6E-91 731.3 28.6 337 86-424 113-532 (936)
29 TIGR02333 2met_isocit_dHY 2-me 100.0 1.1E-86 2.4E-91 725.3 27.5 353 67-424 49-459 (858)
30 cd01586 AcnA_IRP Aconitase A c 100.0 5.5E-87 1.2E-91 681.9 23.3 296 97-424 1-328 (404)
31 COG1048 AcnA Aconitase A [Ener 100.0 5.9E-78 1.3E-82 650.8 21.3 348 67-425 31-469 (861)
32 KOG0453 Aconitase/homoaconitas 100.0 3.9E-77 8.3E-82 621.7 25.5 340 67-423 57-431 (778)
33 KOG0452 RNA-binding translatio 100.0 1.7E-57 3.7E-62 471.7 16.2 350 70-423 61-492 (892)
34 COG1049 AcnB Aconitase B [Ener 100.0 2.4E-50 5.2E-55 420.7 15.1 347 55-424 359-747 (852)
35 KOG0454 3-isopropylmalate dehy 100.0 1.1E-49 2.3E-54 403.9 10.4 410 1-414 1-412 (502)
36 KOG0454 3-isopropylmalate dehy 99.1 3.3E-11 7.1E-16 124.3 5.4 108 324-433 21-163 (502)
37 COG1679 Predicted aconitase [G 94.6 0.17 3.6E-06 53.0 8.9 279 93-424 47-343 (403)
38 PF04412 DUF521: Protein of un 93.5 1.1 2.4E-05 47.5 12.8 242 139-424 92-343 (400)
39 cd06919 Asp_decarbox Aspartate 44.1 7.4 0.00016 34.4 -0.0 35 372-410 19-62 (111)
40 cd01355 AcnX Putative Aconitas 43.7 2.9E+02 0.0063 29.6 11.6 278 91-423 35-329 (389)
41 COG0853 PanD Aspartate 1-decar 40.7 11 0.00024 33.9 0.5 35 372-410 19-62 (126)
42 PRK05449 aspartate alpha-decar 39.5 9.8 0.00021 34.4 -0.0 35 372-410 20-63 (126)
43 TIGR00223 panD L-aspartate-alp 38.5 10 0.00022 34.2 -0.0 35 372-410 20-63 (126)
44 TIGR03471 HpnJ hopanoid biosyn 35.2 5E+02 0.011 27.8 12.1 139 272-427 247-398 (472)
45 TIGR02109 PQQ_syn_pqqE coenzym 35.1 4.8E+02 0.01 26.6 11.5 64 252-319 37-104 (358)
46 PRK15447 putative protease; Pr 29.7 69 0.0015 32.5 4.3 57 364-420 23-88 (301)
47 PRK15452 putative protease; Pr 29.1 64 0.0014 34.8 4.1 50 369-418 23-83 (443)
48 PRK13237 tyrosine phenol-lyase 28.7 3.6E+02 0.0078 29.5 9.6 47 337-383 346-392 (460)
49 PRK00124 hypothetical protein; 25.5 1.6E+02 0.0034 27.5 5.4 111 148-295 14-139 (151)
50 PF02261 Asp_decarbox: Asparta 22.2 13 0.00029 33.1 -2.1 34 374-411 22-64 (116)
51 PF10087 DUF2325: Uncharacteri 22.1 1.4E+02 0.0029 24.9 4.0 37 121-164 45-81 (97)
52 cd06594 GH31_glucosidase_YihQ 22.1 1.2E+02 0.0025 31.0 4.3 53 380-432 67-122 (317)
53 COG0381 WecB UDP-N-acetylgluco 21.6 9.1 0.0002 40.5 -3.8 56 191-248 91-146 (383)
54 cd06593 GH31_xylosidase_YicI Y 21.3 1.3E+02 0.0029 30.1 4.5 52 381-432 63-116 (308)
55 PF01171 ATP_bind_3: PP-loop f 21.1 1.3E+02 0.0029 27.6 4.1 34 126-162 29-62 (182)
56 COG3961 Pyruvate decarboxylase 20.4 55 0.0012 36.2 1.6 79 188-292 373-451 (557)
No 1
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-117 Score=892.52 Aligned_cols=342 Identities=40% Similarity=0.644 Sum_probs=332.6
Q ss_pred CCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCCHHHHHH
Q 013574 67 NAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRN 146 (440)
Q Consensus 67 ~~mTl~EKIla~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~G~~~~v~dp~kvv~~~DH~vp~~~~~~~~~ 146 (440)
++|||+||||++|++...+.|||.+.+++|++|+||.|+|++++.|+ +.|. +||+|+|+++++||++|+.+.+.+++
T Consensus 1 ~~~Tl~eKI~~~h~~~~~~~~G~~~~~~iD~~l~HdvTsP~a~~~lr-~~g~--kV~~p~k~~~~~DH~vPt~~~~~a~~ 77 (423)
T COG0065 1 SAKTLYEKILDAHVGKEEVGAGETVLLYIDLHLVHDVTSPQAFEGLR-EAGR--KVRDPEKTVATFDHNVPTPDIKAAEQ 77 (423)
T ss_pred CCccHHHHHHHHhcccccCCCCCcEEEEeeeeeeeccccHHHHHHHH-HhCC--cccCccceEEEecCCCCCccHHHHHH
Confidence 36999999999999999899999999999999999999999999996 5874 99999999999999999999999999
Q ss_pred HHHHHHHHHHcCcceeeecccCCCcccCCCCCeeeeeeecccceecCCceEEecCCCCccCCcccceeccCCchhhhhhh
Q 013574 147 VDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVL 226 (440)
Q Consensus 147 ~~~lr~fak~~gi~~f~d~~~~~~~~~~ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GAlGala~GvG~td~a~~l 226 (440)
++.||+|||++||.+|||+++ +|||||+++|+|+++||++|||+||||||+|||||||+|+|+||++.+|
T Consensus 78 ~~~lr~~~ke~Gi~~~~~~g~----------~GI~H~v~pE~G~~~PG~~Iv~gDSHT~T~GAfGAfA~GiGttdva~vl 147 (423)
T COG0065 78 QKELRENAKEFGIVNFYDVGD----------QGIVHQVGPEQGLTLPGMTIVGGDSHTCTHGAFGAFAFGIGTTDVAHVL 147 (423)
T ss_pred HHHHHHHHHHhCCeeeecCCC----------CcEEEEEeccccccCCCcEEEecccCcccchhhhhhhccccHHHHHHHH
Confidence 999999999999999999874 7999999999999999999999999999999999999999999999999
Q ss_pred ccceEEeecCCceeEEEEeeCCCCccHhHHHHHHHHHhcccccCceEEEEecCcccCCChhhhhhhhhhccccCceeeec
Q 013574 227 GTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVV 306 (440)
Q Consensus 227 ~tG~~wlkvPetv~V~L~G~L~~gV~aKDviL~li~~l~~~G~~gk~vEF~G~gv~~LS~deR~Tl~NM~~E~GAk~gif 306 (440)
+||++|+++||+++|+++|+||+||+||||||+||+++|++|++|+++||+|+.+++|||++|||||||++|+|||+|||
T Consensus 148 atg~lw~~vpktm~v~v~G~l~~gV~aKDiiL~iIg~iG~~g~t~~aiEf~Ge~i~~lsme~RmTicNMaIE~GAkaGii 227 (423)
T COG0065 148 ATGKLWFRVPKTMKVEVEGKLPPGVTAKDIILALIGKIGVDGGTGYAIEFAGEAIRSLSMEGRMTLCNMAIEAGAKAGII 227 (423)
T ss_pred HhCceeeeccceEEEEEecccCCCccHHHHHHHHHHHhccCCcceEEEEEeccchhhCChhhhhhhhhhhhhhcccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHhhhcCC--CCCccccCCCCCcccEEEEEeCCCcceeeecCCCCCCccccccccc--ceeceEEEecCCCCC
Q 013574 307 PADGTTFKYLEDKTS--LPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKD--VKIDRVYIGSCTGGK 382 (440)
Q Consensus 307 ~pD~~t~~yL~~~~~--~~~~~l~~D~dA~Y~~~i~iDLs~LeP~VA~P~sPdnv~~v~e~~g--~kId~v~IGSCTngr 382 (440)
+||++|++||+++.. ..|+.+++|+||.|+++++||+|+|||+||+|++|||+++++|+.+ ++|||||||||||||
T Consensus 228 ~pDe~T~~Y~k~~~~a~~~~~~l~sD~dA~y~~~v~~d~s~leP~Va~p~~p~nv~~v~e~~~~~i~iDqVFIGSCTNgR 307 (423)
T COG0065 228 APDETTFEYLKEWDGAVAYWKTLKSDEDAVYDKVVELDASDLEPQVAWPTNPDNVVPVSEVEPDPIKIDQVFIGSCTNGR 307 (423)
T ss_pred CCcHhHHHHHHHHhccccccceecCCCCCceeEEEEEEcccCCceeeCCCCcccceecccccCCceeeceEEEeccCCcc
Confidence 999999999998766 6789999999999999999999999999999999999999999999 999999999999999
Q ss_pred hHHHHHHHHHHHhcCCcce--ecEEEECccH-HHHHHhhccccc
Q 013574 383 TEDFLAAAKVFLASVRAIS--IITFFRQPIE-SYKNLLHPSLNE 423 (440)
Q Consensus 383 ~eDL~~AA~vL~~~G~kv~--Vr~~V~PaS~-V~~~~l~~G~~~ 423 (440)
+|||++||+||| |+||+ ||++|+|||+ ||+||+++||.+
T Consensus 308 ieDLr~AA~Ilk--grkva~~Vr~iVvP~S~~V~~qA~~eGl~~ 349 (423)
T COG0065 308 IEDLRAAAEILK--GRKVAPGVRAIVVPGSRRVKEQAEKEGLDK 349 (423)
T ss_pred HHHHHHHHHHhc--cCccCCCceEEEecCcHHHHHHHHHccHHH
Confidence 999999999999 99997 9999999999 999999999965
No 2
>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit. This model along with TIGR00170 describe clades which consist only of LeuC sequences. Here, the genes from Pyrococcus furiosus, Clostridium acetobutylicum, Thermotoga maritima and others are gene clustered with related genes from the leucine biosynthesis pathway.
Probab=100.00 E-value=2.8e-115 Score=896.79 Aligned_cols=342 Identities=37% Similarity=0.696 Sum_probs=332.6
Q ss_pred CcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCCHHHHHHHH
Q 013574 69 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVD 148 (440)
Q Consensus 69 mTl~EKIla~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~G~~~~v~dp~kvv~~~DH~vp~~~~~~~~~~~ 148 (440)
|||+||||++|+++..|+|||+|++++|++|+||.|+|++++.|++ +|. .+||||+|+++++||++|+.+.+.+++++
T Consensus 1 ~Tl~eKIl~~h~~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~f~~-~g~-~~V~dp~~v~~~~DH~vpa~~~~~a~~~~ 78 (419)
T TIGR02083 1 MTMAEKILAQHAGLESVEPGELILAKLDIVLGNDITTPLAIKAFKE-YGG-KKVFDPDRVALVPDHFTPNKDIKSAEQCK 78 (419)
T ss_pred CCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEEeccHHHHHHHHHH-cCC-CcCCCCCCEEEEeCCCCCCCCHHHHHHHH
Confidence 7999999999999988999999999999999999999999999965 774 79999999999999999999999999999
Q ss_pred HHHHHHHHcCcceeeecccCCCcccCCCCCeeeeeeecccceecCCceEEecCCCCccCCcccceeccCCchhhhhhhcc
Q 013574 149 ILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGT 228 (440)
Q Consensus 149 ~lr~fak~~gi~~f~d~~~~~~~~~~ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GAlGala~GvG~td~a~~l~t 228 (440)
++|+|+|+|||++|||.++ +|||||+++|+|+++||++++|+||||||+||||+||||+|+||++.+|+|
T Consensus 79 ~~r~fa~~~gi~~f~d~g~----------~GI~H~v~~E~g~~~PG~~ivg~DSHT~t~Ga~Ga~a~GvG~td~a~~lat 148 (419)
T TIGR02083 79 MMREFAREQGIEKFFEIGN----------MGIEHALLPEEGIVKPGDLIIGADSHTCTYGALGAFATGVGSTDMAVGMAT 148 (419)
T ss_pred HHHHHHHHcCCcceecCCC----------cceeeeeccccCccCCCeEEEecCCCccccCccceeEEccChHHHHHHHhc
Confidence 9999999999998998752 499999999999999999999999999999999999999999999999999
Q ss_pred ceEEeecCCceeEEEEeeCCCCccHhHHHHHHHHHhcccccCceEEEEecCcccCCChhhhhhhhhhccccCceeeeccC
Q 013574 229 GKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPA 308 (440)
Q Consensus 229 G~~wlkvPetv~V~L~G~L~~gV~aKDviL~li~~l~~~G~~gk~vEF~G~gv~~LS~deR~Tl~NM~~E~GAk~gif~p 308 (440)
|++||+|||||+|+|+|+||+||++|||||+|+++|+++|++|++|||+|+++++||+++|||||||++|+||++|+|||
T Consensus 149 g~~w~~vPetv~v~l~G~l~~gV~aKDviL~l~~~lg~~G~~~~~iEf~G~~v~~ls~~~R~Tl~NMa~E~GA~~~i~~~ 228 (419)
T TIGR02083 149 GKAWFRVPEAIKFVLKGKLKPWVTGKDLILHIIGIIGVDGALYKSMEFSGEGLKELSMDDRFTIANMAIEAGAKTGIFPV 228 (419)
T ss_pred CCeeecCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCHHHHhhhhhcccccCceeeEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHhhhcCCCCCccccCCCCCcccEEEEEeCCCcceeeecCCCCCCcccccccc--cceeceEEEecCCCCChHHH
Q 013574 309 DGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECK--DVKIDRVYIGSCTGGKTEDF 386 (440)
Q Consensus 309 D~~t~~yL~~~~~~~~~~l~~D~dA~Y~~~i~iDLs~LeP~VA~P~sPdnv~~v~e~~--g~kId~v~IGSCTngr~eDL 386 (440)
|++|++||+.|+.++|+.+.+|+||.|+++++||||+|||+||+|++|||+.|++|++ +++|||||||||||||+|||
T Consensus 229 D~~t~~yL~~r~~~~~~~~~~D~dA~Y~~~~~iDls~leP~va~P~~pdnv~~v~e~~~~g~~id~v~IGSCTngr~eDl 308 (419)
T TIGR02083 229 DEITIEYEKGRGKREEKIYKADEDAKYVRVIEIDLSELEPQVAFPHLPENTKDISEAGKEEIKIDQVVIGSCTNGRLEDL 308 (419)
T ss_pred ChHHHHHHhhCCccchhcccCCCCCCEEEEEEEEccccceeecCCCCcccCcChhhcccccCccCeEEEEcCCCCChHHH
Confidence 9999999999988889999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHhcCCcce--ecEEEECccH-HHHHHhhcccccc
Q 013574 387 LAAAKVFLASVRAIS--IITFFRQPIE-SYKNLLHPSLNEM 424 (440)
Q Consensus 387 ~~AA~vL~~~G~kv~--Vr~~V~PaS~-V~~~~l~~G~~~~ 424 (440)
++||+||| |+||+ ||++|+|+|+ ||++|+++|+.+-
T Consensus 309 ~~AA~iLk--G~kv~~~vr~~v~P~S~~v~~~a~~~G~~~~ 347 (419)
T TIGR02083 309 RLAAEILK--GKTVAPDVRCIIIPGSQNVYLEAMKEGLLEI 347 (419)
T ss_pred HHHHHHHc--CCCCCCCccEEEeCCCHHHHHHHHHCCcHHH
Confidence 99999999 99997 9999999999 9999999999763
No 3
>TIGR01343 hacA_fam homoaconitate hydratase family protein. This model represents a subfamily of proteins consisting of aconitase, homoaconitase, 3-isopropylmalate dehydratase, and uncharacterized proteins. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterized member is Thermus thermophilus homoaconitase, an enzyme of a non-aspartate pathway of Lys biosynthesis.
Probab=100.00 E-value=3.4e-113 Score=881.27 Aligned_cols=339 Identities=40% Similarity=0.712 Sum_probs=330.1
Q ss_pred cHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCCHHHHHHHHH
Q 013574 70 TLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDI 149 (440)
Q Consensus 70 Tl~EKIla~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~G~~~~v~dp~kvv~~~DH~vp~~~~~~~~~~~~ 149 (440)
||+||||++|+++ .++|||++++++|++|+||.|+|++++.|++ +|. .+||||+|+++++||++|+.+.+.+++|++
T Consensus 1 Tl~eKIl~~h~~~-~v~~G~~v~~~vD~~~~hD~t~p~a~~~~~~-~g~-~~v~~P~~v~~~~DH~~p~~~~~~a~~~~~ 77 (412)
T TIGR01343 1 TIAEKILSKHSGK-EVYAGDLIVAEIDQAMVHDITAPLAIRRLEE-YGI-DKVFDPERIVIVVDHVVPASTIKAAEMQKL 77 (412)
T ss_pred CHHHHHHHHhcCC-ccCCCCEEEEECCEEEEecccHHHHHHHHHH-cCC-CcCCCCCcEEEEcCCCCCCCChhHHHHHHH
Confidence 8999999999998 5899999999999999999999999999964 774 799999999999999999999999999999
Q ss_pred HHHHHHHcCcceeeecccCCCcccCCCCCeeeeeeecccceecCCceEEecCCCCccCCcccceeccCCchhhhhhhccc
Q 013574 150 LRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTG 229 (440)
Q Consensus 150 lr~fak~~gi~~f~d~~~~~~~~~~ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GAlGala~GvG~td~a~~l~tG 229 (440)
+|+|||+|||++|||. |+|||||+++|+|+++||++++|+||||||+||||+||||+|+||++.+|+||
T Consensus 78 ~r~fa~~~gi~~~~~~-----------g~GI~H~v~~E~g~~~PG~~iig~DSHT~t~GalGa~a~GvG~td~a~~~atg 146 (412)
T TIGR01343 78 AREFVKKTGIKHFFDV-----------GEGICHQVLPEEGLVKPGDLVVGADSHTCTYGALGAFATGMGSTDIAYAIATG 146 (412)
T ss_pred HHHHHHHcCCceeecC-----------CCCEEEEEchhhCcCCCCcEEEecCCCcCCcCchhheeecccHHHHHHHHhcC
Confidence 9999999999988864 57999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCCceeEEEEeeCCCCccHhHHHHHHHHHhcccccCceEEEEecCcccCCChhhhhhhhhhccccCceeeeccCc
Q 013574 230 KVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPAD 309 (440)
Q Consensus 230 ~~wlkvPetv~V~L~G~L~~gV~aKDviL~li~~l~~~G~~gk~vEF~G~gv~~LS~deR~Tl~NM~~E~GAk~gif~pD 309 (440)
++||||||+|+|+|+|+|++||++|||||+||++++.+|++|+++||+|+++++||+++|||||||++|+||++|+||||
T Consensus 147 ~~w~~vPe~i~v~l~G~l~~gV~akDviL~li~~~g~~g~~~~~vEf~G~~i~~Ls~~~R~ti~NMa~E~GA~~~i~~~D 226 (412)
T TIGR01343 147 KTWFRVPESMKVTLTGKLNPGVTAKDVILEVIGQIGVDGATYMAMEFHGETIKNMTMEERMTLANMAIEAGGKTGIIEPD 226 (412)
T ss_pred cEeecCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcceEEEEEECCcccccCHHHHhhhhccccccCceeeEecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcCCCCCccccCCCCCcccEEEEEeCCCcceeeecCCCCCCcccccccccceeceEEEecCCCCChHHHHHH
Q 013574 310 GTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAA 389 (440)
Q Consensus 310 ~~t~~yL~~~~~~~~~~l~~D~dA~Y~~~i~iDLs~LeP~VA~P~sPdnv~~v~e~~g~kId~v~IGSCTngr~eDL~~A 389 (440)
++|++||+.+++++|+.+.+|+||.|+++++||||+|||+||+|++|||+.|++|++|++|||||||||||||+|||++|
T Consensus 227 e~t~~yl~~~~~~~~~~~~~D~da~Y~~~i~iDls~leP~va~P~~Pdnv~~v~~~~g~~id~~~IGSCTngr~~Dl~~a 306 (412)
T TIGR01343 227 EKTRAYLKERYKEPFRVYKSDEDAEYAKEVEIDASQLEPVVAAPHNVDNVHPVSEVEGIEVDQVFIGSCTNGRIEDLRVA 306 (412)
T ss_pred HHHHHHHHhhCcccccccCCCCCCCEEEEEEEEcccceeeEecCCCCCcEEEhHHhCCCeeeEEEEecCCCCChHHHHHH
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcce--ecEEEECccH-HHHHHhhcccccc
Q 013574 390 AKVFLASVRAIS--IITFFRQPIE-SYKNLLHPSLNEM 424 (440)
Q Consensus 390 A~vL~~~G~kv~--Vr~~V~PaS~-V~~~~l~~G~~~~ 424 (440)
|+||+ |+||+ ||++|+|+|+ |+++++++|+++.
T Consensus 307 A~il~--G~kv~~~v~~~v~P~S~~V~~~~~~~G~~~~ 342 (412)
T TIGR01343 307 AKILK--GRKVAPDVRLIVIPASRAVYLQALKEGLIEI 342 (412)
T ss_pred HHHHc--CCCCCCCCCEEEeCCCHHHHHHHHHcCcHHH
Confidence 99999 99997 9999999999 9999999999763
No 4
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed
Probab=100.00 E-value=7.7e-113 Score=879.94 Aligned_cols=342 Identities=46% Similarity=0.782 Sum_probs=332.2
Q ss_pred CCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCCHHHHHH
Q 013574 67 NAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRN 146 (440)
Q Consensus 67 ~~mTl~EKIla~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~G~~~~v~dp~kvv~~~DH~vp~~~~~~~~~ 146 (440)
|||||+||||++|+++. +++||++++++|++|+||.|+|++++.|++ +|. .+||||+|+++++||++|+.+.+.+++
T Consensus 1 m~~Tl~eKIl~~h~~~~-v~~G~~v~v~vD~~~~hD~t~p~a~~~~~~-~g~-~~v~~P~~~~~~~DH~~p~~~~~~a~~ 77 (418)
T PRK00402 1 MGMTLAEKILARHSGRD-VSPGDIVEAKVDLVMAHDITGPLAIKEFEK-IGG-DKVFDPSKIVIVFDHFVPAKDIKSAEQ 77 (418)
T ss_pred CCcCHHHHHHHHhcCCC-CCCCCEEEEECCEEEEecccHHHHHHHHHH-cCC-CccCCCCcEEEECCCCCCCCChhhHHH
Confidence 68999999999999986 789999999999999999999999999964 774 799999999999999999999999999
Q ss_pred HHHHHHHHHHcCcceeeecccCCCcccCCCCCeeeeeeecccceecCCceEEecCCCCccCCcccceeccCCchhhhhhh
Q 013574 147 VDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVL 226 (440)
Q Consensus 147 ~~~lr~fak~~gi~~f~d~~~~~~~~~~ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GAlGala~GvG~td~a~~l 226 (440)
++++|+|||+|||++||+.+ +|||||+++|+|+++||++++|+||||||+||||+||||+|+||++.+|
T Consensus 78 ~~~~r~fa~~~gi~~~~~~g-----------~GI~H~v~~E~g~~~PG~~ivg~DSHT~t~GalG~~a~GvG~td~~~~l 146 (418)
T PRK00402 78 QKILREFAKEQGIPNFFDVG-----------EGICHQVLPEKGLVRPGDVVVGADSHTCTYGALGAFATGMGSTDMAAAM 146 (418)
T ss_pred HHHHHHHHHHcCCcceeCCC-----------CCEeeEehhhcCccCCCcEEEeCCCCccccCccceEEecccHHHHHHHH
Confidence 99999999999999888754 6999999999999999999999999999999999999999999999999
Q ss_pred ccceEEeecCCceeEEEEeeCCCCccHhHHHHHHHHHhcccccCceEEEEecCcccCCChhhhhhhhhhccccCceeeec
Q 013574 227 GTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVV 306 (440)
Q Consensus 227 ~tG~~wlkvPetv~V~L~G~L~~gV~aKDviL~li~~l~~~G~~gk~vEF~G~gv~~LS~deR~Tl~NM~~E~GAk~gif 306 (440)
+||++||+|||+|+|+|+|+|++||++|||||+|+++|+.+|++|++|||+|+|+++||+++|||||||++|+||++|+|
T Consensus 147 ~tg~~~~~vPe~v~V~l~G~l~~gV~akDviL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~~R~Ti~NM~~E~GA~~~i~ 226 (418)
T PRK00402 147 ATGKTWFKVPETIKVVLEGKLPPGVTAKDVILHIIGDIGVDGATYKALEFTGETIEALSMDERMTLANMAIEAGAKAGIF 226 (418)
T ss_pred hcCcEEEcCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCccceEEEEEECCccccCCHHHHhhhhhcccccCceeeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHhhhcCCCCCccccCCCCCcccEEEEEeCCCcceeeecCCCCCCcccccccccceeceEEEecCCCCChHHH
Q 013574 307 PADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDF 386 (440)
Q Consensus 307 ~pD~~t~~yL~~~~~~~~~~l~~D~dA~Y~~~i~iDLs~LeP~VA~P~sPdnv~~v~e~~g~kId~v~IGSCTngr~eDL 386 (440)
|+|++|++||+.++.++|+.+.+|+||.|+++++||||+|||+||+|++|||+.|++|+++++|||||||||||||+|||
T Consensus 227 ~~D~~t~~yl~~~~~~~~~~l~~D~~a~Y~~~i~iDls~leP~va~P~~Pdnv~~v~~~~g~~id~~~IGSCTngr~eDl 306 (418)
T PRK00402 227 APDEKTLEYLKERAGRDYKPWKSDEDAEYEEVYEIDLSKLEPQVAAPHLPDNVKPVSEVEGTKVDQVFIGSCTNGRLEDL 306 (418)
T ss_pred cCChHHHHHHHhhcccccccccCCCCCCEEEEEEEEcccceeeeecCCCccceeEchhhCCceeeEEEEecCCCCChHHH
Confidence 99999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcce--ecEEEECccH-HHHHHhhcccccc
Q 013574 387 LAAAKVFLASVRAIS--IITFFRQPIE-SYKNLLHPSLNEM 424 (440)
Q Consensus 387 ~~AA~vL~~~G~kv~--Vr~~V~PaS~-V~~~~l~~G~~~~ 424 (440)
++||+||| |+|++ ||++|+|+|+ ||++++++|+++.
T Consensus 307 ~~aA~il~--G~kv~~~V~~~v~PgS~~V~~~~~~~G~~~~ 345 (418)
T PRK00402 307 RIAAEILK--GRKVAPGVRLIVIPASQKIYLQALKEGLIEI 345 (418)
T ss_pred HHHHHHHc--CCCCCCCccEEEeCCCHHHHHHHHHcCcHHH
Confidence 99999999 99997 9999999999 9999999999864
No 5
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit. This subfamily is a subset of the larger HacA family (Homoaconitate hydratase family, TIGR01343) and is most closely related to the 3-isopropylmalate dehydratase, large subunits which form TIGR00170. This subfamily includes the members of TIGR01343 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=1.2e-112 Score=877.09 Aligned_cols=337 Identities=41% Similarity=0.685 Sum_probs=328.3
Q ss_pred CcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCCHHHHHHHH
Q 013574 69 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVD 148 (440)
Q Consensus 69 mTl~EKIla~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~G~~~~v~dp~kvv~~~DH~vp~~~~~~~~~~~ 148 (440)
|||+||||++|++++ ++|||++++++|++|+||.|+|++++.|++ +| .++|||+++++++||++|+.+.+.+++|+
T Consensus 1 ~Tl~eKIl~~h~~~~-v~~G~~v~~~vD~~~~hD~t~p~a~~~~~~-~g--~~v~~p~~~~~~~DH~~p~~~~~~a~~~~ 76 (412)
T TIGR02086 1 MTLAEKILSEKVGRP-VEAGEIVEVEVDLAMAHDGTGPLAIETLRE-LG--ARVEDPEKIVIFFDHVVPPPTVEAANRQK 76 (412)
T ss_pred CCHHHHHHHHhcCCc-cCCCCEEEEECCEEEEecccHHHHHHHHHH-cC--CcccCCCCEEEECCCCCCCCCHHHHHHHH
Confidence 799999999999987 899999999999999999999999999964 76 68999999999999999999999999999
Q ss_pred HHHHHHHHcCcceeeecccCCCcccCCCCCeeeeeeecccceecCCceEEecCCCCccCCcccceeccCCchhhhhhhcc
Q 013574 149 ILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGT 228 (440)
Q Consensus 149 ~lr~fak~~gi~~f~d~~~~~~~~~~ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GAlGala~GvG~td~a~~l~t 228 (440)
.+|+||+++||++ |+ +++|||||+++|+|+++||++++|+||||||+||||+||||+|+||++.+|+|
T Consensus 77 ~~r~fa~~~gi~~-~~-----------~g~GI~H~v~~E~G~~~PG~~iig~DSHT~t~GalGa~a~GvG~td~a~~lat 144 (412)
T TIGR02086 77 EIREFAKEHGIPV-FD-----------VGEGICHQVLVEEGYAGPGMVVVGGDSHTCTSGAVGAFATGMGATDVAIALAT 144 (412)
T ss_pred HHHHHHHHcCCcE-EC-----------CCCCeEeEEhhhcCccCCCcEEEecCCCccccchhhheeecccHHHHHHHHhc
Confidence 9999999999985 54 45899999999999999999999999999999999999999999999999999
Q ss_pred ceEEeecCCceeEEEEeeCCCCccHhHHHHHHHHHhcccccCceEEEEecCcccCCChhhhhhhhhhccccCceeeeccC
Q 013574 229 GKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPA 308 (440)
Q Consensus 229 G~~wlkvPetv~V~L~G~L~~gV~aKDviL~li~~l~~~G~~gk~vEF~G~gv~~LS~deR~Tl~NM~~E~GAk~gif~p 308 (440)
|++||+|||+|+|+|+|+|++||++|||||+|+++|+.+|++|++|||.|+++++||+++|||||||++|+||++|+|||
T Consensus 145 g~~~~~vPeti~v~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~~i~~~ 224 (412)
T TIGR02086 145 GKTWLKVPESIKVVVEGKPEEGVTAKDVALHIVGELGADGATYMAIEFFGLPIEAMSMDERMTLCNMAVEAGAKAGIVVP 224 (412)
T ss_pred CCchhcCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCcCccceeEEEEECccccccCHHHHhhhhhcccccCceeeEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHhhhcCCCCCccccCCCCCcccEEEEEeCCCcceeeecCCCCCCcccccccccceeceEEEecCCCCChHHHHH
Q 013574 309 DGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLA 388 (440)
Q Consensus 309 D~~t~~yL~~~~~~~~~~l~~D~dA~Y~~~i~iDLs~LeP~VA~P~sPdnv~~v~e~~g~kId~v~IGSCTngr~eDL~~ 388 (440)
|++|++||+.+++.+|+.+.+|+||.|+++++||||+|||+||+|++|||+.|++++++++|||||||||||||+|||++
T Consensus 225 D~~t~~yl~~~~~~~~~~~~~D~~a~Y~~~i~iDls~leP~va~P~~P~nv~~v~~~~~~~id~~~IGSCTngr~~Dl~~ 304 (412)
T TIGR02086 225 DEETYEYLKKRRGYEFRILRPDPGAKYDDEIEIDLSDLEPLVAVPHSVDNVRPVSDVEGTEIDQVFIGSCTNGRIEDLRI 304 (412)
T ss_pred CHHHHHHHHhcCCcccccccCCCCCCEEEEEEEEccceeEEecCCCChHhcccchhhcccceeEEEEeccCCCChHHHHH
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcce--ecEEEECccH-HHHHHhhccccc
Q 013574 389 AAKVFLASVRAIS--IITFFRQPIE-SYKNLLHPSLNE 423 (440)
Q Consensus 389 AA~vL~~~G~kv~--Vr~~V~PaS~-V~~~~l~~G~~~ 423 (440)
||+||| |+||+ ||++|+|+|+ ||++++++|+++
T Consensus 305 aA~vLk--G~kv~~~v~~~v~P~S~~v~~~~~~~G~~~ 340 (412)
T TIGR02086 305 AAEILE--GRRVHPDVRLIVVPASRKVYERALEEGIIL 340 (412)
T ss_pred HHHHHc--CCCCCCCcCEEEeCCCHHHHHHHHHcCcHH
Confidence 999999 99997 9999999999 999999999976
No 6
>PRK12466 isopropylmalate isomerase large subunit; Provisional
Probab=100.00 E-value=2.3e-110 Score=873.62 Aligned_cols=342 Identities=33% Similarity=0.531 Sum_probs=327.2
Q ss_pred CCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCC------
Q 013574 67 NAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSD------ 140 (440)
Q Consensus 67 ~~mTl~EKIla~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~G~~~~v~dp~kvv~~~DH~vp~~~------ 140 (440)
|+|||+||||++|+++. +.+| .|+++||++|+||.|+|++++.|++ +| .++|||+++++++||++|+.+
T Consensus 2 m~~Tl~eKI~~~h~~~~-~~~g-~v~~~vD~~~~hD~t~p~a~~~~~~-~g--~~v~~P~~~~~~~DH~vp~~~~~~~~~ 76 (471)
T PRK12466 2 MPRTLYDKLWDSHTVAR-LDDG-HVLLYIDRHLLNEYTSPQAFSGLRA-RG--RTVRRPDLTLAVVDHVVPTRPGRDRGI 76 (471)
T ss_pred CCcCHHHHHHHHhcCCC-CCCC-EEEEeccEEEEeccccHHHHHHHHH-cC--CcccCCCCeEEEeCCCCCCCccccccc
Confidence 78999999999999987 7777 9999999999999999999999965 66 489999999999999999998
Q ss_pred --HHHHHHHHHHHHHHHHcCcceeeecccCCCcccCCCCCeeeeeeecccceecCCceEEecCCCCccCCcccceeccCC
Q 013574 141 --ERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIG 218 (440)
Q Consensus 141 --~~~~~~~~~lr~fak~~gi~~f~d~~~~~~~~~~ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GAlGala~GvG 218 (440)
.+.+++++++|+||++||| +||+++ ||++|||||+++|+|+++||++|||+||||||+||||+||||+|
T Consensus 77 ~~~~~~~~~~~~r~~a~~~gi-~~~~~~--------~p~~GI~Hqv~~E~G~~~PG~~ivg~DSHT~t~GalGala~GvG 147 (471)
T PRK12466 77 TDPGGALQVDYLRENCADFGI-RLFDVD--------DPRQGIVHVVAPELGLTLPGMVIVCGDSHTTTYGALGALAFGIG 147 (471)
T ss_pred cCHHHHHHHHHHHHHHHHcCC-eeeccC--------CCCCCEEeEEccccCcccCCceEEccCCCcCCcChhhheEEccC
Confidence 8889999999999999999 467765 57899999999999999999999999999999999999999999
Q ss_pred chhhhhhhccceEEeecCCceeEEEEeeCCCCccHhHHHHHHHHHhcccccCceEEEEecCcccCCChhhhhhhhhhccc
Q 013574 219 NTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVE 298 (440)
Q Consensus 219 ~td~a~~l~tG~~wlkvPetv~V~L~G~L~~gV~aKDviL~li~~l~~~G~~gk~vEF~G~gv~~LS~deR~Tl~NM~~E 298 (440)
+||++.+|+||++||+|||+|+|+|+|+|++||++|||||+||++|+.+|++|++|||+|+||++||+++|||||||++|
T Consensus 148 ~td~~~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~iEf~G~~i~~Ls~~~R~Ti~NMa~E 227 (471)
T PRK12466 148 TSEVEHVLATQTLVYRKPKTMRVRVDGELPPGVTAKDLILALIARIGADGATGYAIEFAGEAIRALSMEGRMTLCNMAVE 227 (471)
T ss_pred HHHHHHHHhCCeEEeeCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCHHHHhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeeeccCchhHHHHhhhcCC-----------CCCccccCCCCCcccEEEEEeCCCcceeeecCCCCCCcccccc---
Q 013574 299 AGGKNGVVPADGTTFKYLEDKTS-----------LPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARE--- 364 (440)
Q Consensus 299 ~GAk~gif~pD~~t~~yL~~~~~-----------~~~~~l~~D~dA~Y~~~i~iDLs~LeP~VA~P~sPdnv~~v~e--- 364 (440)
+||++|+||+|++|++||+.+++ +.|+.+++|+||.|+++++||||+|||+||+|++|||+.|++|
T Consensus 228 ~GA~~gi~~~D~~t~~yl~~~~~~~~~~~~~~~~~~~~~~~~D~~a~Y~~~i~iDls~leP~va~P~~P~n~~~v~e~~~ 307 (471)
T PRK12466 228 AGARGGLIAPDETTFDYLRGRPRAPKGALWDAALAYWRTLRSDADAVFDREVEIDAADIAPQVTWGTSPDQAVPITGRVP 307 (471)
T ss_pred cCceEEEecCChHHHHHHHhCCCchhHHHHHHHHhhhhcccCCCCCceEEEEEEEcccceEeecCCCChhhceEccccCc
Confidence 99999999999999999999885 3477889999999999999999999999999999999999988
Q ss_pred ----------------------------cccceeceEEEecCCCCChHHHHHHHHHHHhcCCcce--ecEEEECccH-HH
Q 013574 365 ----------------------------CKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASVRAIS--IITFFRQPIE-SY 413 (440)
Q Consensus 365 ----------------------------~~g~kId~v~IGSCTngr~eDL~~AA~vL~~~G~kv~--Vr~~V~PaS~-V~ 413 (440)
+++++|||||||||||||+|||++||+||| |+||+ ||++|+|+|+ |+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~y~~l~~g~~~~~~~Id~~~IGSCTNgr~eDl~~aA~ilk--G~kv~~~V~~~v~PgS~~V~ 385 (471)
T PRK12466 308 DPAAEADPARRAAMERALDYMGLTPGTPLAGIPIDRVFIGSCTNGRIEDLRAAAAVLR--GRKVAPGVRAMVVPGSGAVR 385 (471)
T ss_pred ChhhhcchhhhhhhhhhhhhcccCCCcccCCceEEEEEEeccCCCChHHHHHHHHHHc--CCCCCCCccEEEECCCHHHH
Confidence 678999999999999999999999999999 99997 9999999999 99
Q ss_pred HHHhhcccccc
Q 013574 414 KNLLHPSLNEM 424 (440)
Q Consensus 414 ~~~l~~G~~~~ 424 (440)
++|+++|+++-
T Consensus 386 ~~~~~~Gl~~~ 396 (471)
T PRK12466 386 RQAEAEGLARI 396 (471)
T ss_pred HHHHHCCcHHH
Confidence 99999999864
No 7
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. These homologs are now described by a separate model of subfamily (rather than equivalog) homology type, and the priors and cutoffs for this model have been changed to focus this equivalog family more narrowly.
Probab=100.00 E-value=9.9e-110 Score=867.65 Aligned_cols=342 Identities=32% Similarity=0.507 Sum_probs=325.3
Q ss_pred CCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCC------
Q 013574 67 NAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSD------ 140 (440)
Q Consensus 67 ~~mTl~EKIla~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~G~~~~v~dp~kvv~~~DH~vp~~~------ 140 (440)
|+|||+||||++|+++. ++||.++++||++|+||.|+|++++.|++ +| .+||||+++++++||++|+.+
T Consensus 1 M~~Tl~eKI~~~h~~~~--~~g~~v~~~vD~~~~hD~t~~~a~~~~~~-~g--~~v~~p~~~~~~~DH~vp~~~~~~~~~ 75 (465)
T TIGR00170 1 MPRTLYEKLFDAHIVYE--AEGETPLLYIDRHLIHEVTSPQAFEGLRQ-AG--RKVRRPQKTFATMDHNIPTQNRDFNIK 75 (465)
T ss_pred CCCCHHHHHHHHhcCCC--CCCCEEEEEeeeeeecccchHHHHHHHHH-cC--CCcCCCcCEEEEeCCCCCCCCcccccc
Confidence 68999999999999986 58999999999999999999999999965 66 589999999999999999976
Q ss_pred -HHHHHHHHHHHHHHHHcCcceeeecccCCCcccCCCCCeeeeeeecccceecCCceEEecCCCCccCCcccceeccCCc
Q 013574 141 -ERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGN 219 (440)
Q Consensus 141 -~~~~~~~~~lr~fak~~gi~~f~d~~~~~~~~~~ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GAlGala~GvG~ 219 (440)
...+++++++|+|+++|||+ ||+++ ||++|||||+++|+|+++||++|+|+||||||+||||+||||||+
T Consensus 76 ~~~~~~~~~~~r~~a~~~gi~-~~~v~--------~p~~GI~Hqv~~E~g~~~PG~~ivgtDSHT~t~GalGala~GvG~ 146 (465)
T TIGR00170 76 DEVAKIQVTELEKNCKEFGVR-LFDLH--------SVDQGIVHVMGPEQGLTLPGMTIVCGDSHTSTHGAFGALAFGIGT 146 (465)
T ss_pred CHHHHHHHHHHHHHHHHhCCe-eeccC--------CCCCCEeCeEccccCcccCCceEEecCCCccccccccceEEccCH
Confidence 36778899999999999995 67664 678999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccceEEeecCCceeEEEEeeCCCCccHhHHHHHHHHHhcccccCceEEEEecCcccCCChhhhhhhhhhcccc
Q 013574 220 TDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEA 299 (440)
Q Consensus 220 td~a~~l~tG~~wlkvPetv~V~L~G~L~~gV~aKDviL~li~~l~~~G~~gk~vEF~G~gv~~LS~deR~Tl~NM~~E~ 299 (440)
||++.+|+||++||+|||+|+|+|+|+||+||++|||||+|+++|+.+|++|++|||+|+||++||+++|||||||++|+
T Consensus 147 te~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~vEF~G~gv~~Ls~~~R~Ti~NMa~E~ 226 (465)
T TIGR00170 147 SEVEHVLATQTLKQARAKTMKIEVDGKLAPGITAKDIILAIIGKTGVAGGTGHVIEFCGEAIRDLSMEGRMTVCNMAIEA 226 (465)
T ss_pred HHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCccCcceEEEEEEccccccccHHHhhhhhhcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeccCchhHHHHhhhcCC-----------CCCccccCCCCCcccEEEEEeCCCcceeeecCCCCCCcccccc----
Q 013574 300 GGKNGVVPADGTTFKYLEDKTS-----------LPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARE---- 364 (440)
Q Consensus 300 GAk~gif~pD~~t~~yL~~~~~-----------~~~~~l~~D~dA~Y~~~i~iDLs~LeP~VA~P~sPdnv~~v~e---- 364 (440)
||++|+||+|++|++||+.|++ ..|+.+++|+||.|+++++||||+|||+||+|++|+|+.|++|
T Consensus 227 GA~~gi~~~D~~t~~yl~~r~~~~~~~~~~~~~~~~~~l~~d~~a~Y~~~i~iDls~leP~Va~P~~P~n~~~v~e~~~~ 306 (465)
T TIGR00170 227 GARAGLIAPDETTFEYCKGRPHAPKGKEFDKAVAYWKTLKTDEGAVFDTVITLEANDISPQVTWGTNPGQVLPVNSEVPD 306 (465)
T ss_pred CceeeEecCChhHHHHHhcCCcccchhHHHHHHHhhhhccCCCCCceeEEEEEEcccceeeecCCCChhhccCccccCCC
Confidence 9999999999999999998875 2367788999999999999999999999999999999999998
Q ss_pred ---------------------------cccceeceEEEecCCCCChHHHHHHHHHHHhcCCcce--ecEEEECccH-HHH
Q 013574 365 ---------------------------CKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASVRAIS--IITFFRQPIE-SYK 414 (440)
Q Consensus 365 ---------------------------~~g~kId~v~IGSCTngr~eDL~~AA~vL~~~G~kv~--Vr~~V~PaS~-V~~ 414 (440)
+++++|||||||||||||+|||++||+||| |+||+ ||++|+|+|+ |++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~IGSCTNgr~~dl~aaA~vlk--G~kv~~~V~~~v~PgS~~V~~ 384 (465)
T TIGR00170 307 PESFADPVDKASAERALAYMGLEPGTPLKDIKVDKVFIGSCTNSRIEDLRAAAAVIK--GRKVADNVKALVVPGSGLVKL 384 (465)
T ss_pred hhhhcchhhhhhhhhhhhhccccCCcccCCCeEEEEEEecCCCCCHHHHHHHHHHhc--CCCcCCCccEEEECCCHHHHH
Confidence 678999999999999999999999999999 99997 9999999999 999
Q ss_pred HHhhcccccc
Q 013574 415 NLLHPSLNEM 424 (440)
Q Consensus 415 ~~l~~G~~~~ 424 (440)
+|+++||++-
T Consensus 385 ~~~~~Gl~~~ 394 (465)
T TIGR00170 385 QAEKEGLDKI 394 (465)
T ss_pred HHHHCCcHHH
Confidence 9999999763
No 8
>PRK05478 isopropylmalate isomerase large subunit; Validated
Probab=100.00 E-value=4.9e-109 Score=863.22 Aligned_cols=342 Identities=33% Similarity=0.515 Sum_probs=325.9
Q ss_pred CCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCCH-----
Q 013574 67 NAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDE----- 141 (440)
Q Consensus 67 ~~mTl~EKIla~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~G~~~~v~dp~kvv~~~DH~vp~~~~----- 141 (440)
|+|||+||||++|+++. .|||.+++++|++|+||.|+|++++.|++ +| .++|||+++++++||++|+.+.
T Consensus 1 m~~tl~eKIl~~h~~~~--~~g~~v~~~vD~~~~hD~t~~~a~~~~~~-~g--~~v~~p~~~~~~~DH~v~~~~~~~~~~ 75 (466)
T PRK05478 1 MGKTLYDKLWDAHVVHE--EEDGPDLLYIDRHLVHEVTSPQAFEGLRL-AG--RKVRRPDLTFATMDHNVPTTDRDLPIA 75 (466)
T ss_pred CCCCHHHHHHHHhcCCC--CCCCEEEEEeccceeecccHHHHHHHHHH-cC--CCccCCCCeEEEcCCCCCCCccccccc
Confidence 68999999999999986 39999999999999999999999999965 66 4899999999999999999887
Q ss_pred --HHHHHHHHHHHHHHHcCcceeeecccCCCcccCCCCCeeeeeeecccceecCCceEEecCCCCccCCcccceeccCCc
Q 013574 142 --RANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGN 219 (440)
Q Consensus 142 --~~~~~~~~lr~fak~~gi~~f~d~~~~~~~~~~ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GAlGala~GvG~ 219 (440)
..+++++++|+||++|||+ ||+++ ||++|||||++.|+|+++||+++||+||||||+||||+||||+|+
T Consensus 76 ~~~~~~~~~~~r~~a~~~gi~-~~~~~--------~~~~GI~Hqv~~E~g~~~PG~~ivGtDSHT~t~GalGa~a~GvG~ 146 (466)
T PRK05478 76 DPVSRIQVETLEKNCKEFGIT-LFDLG--------DPRQGIVHVVGPEQGLTLPGMTIVCGDSHTSTHGAFGALAFGIGT 146 (466)
T ss_pred CHHHHHHHHHHHHHHHHcCCe-eeccC--------CCCCCEeCeEccccccccCCceEEecCCCccccchhhheEeCCCH
Confidence 7788899999999999995 67654 678999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccceEEeecCCceeEEEEeeCCCCccHhHHHHHHHHHhcccccCceEEEEecCcccCCChhhhhhhhhhcccc
Q 013574 220 TDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEA 299 (440)
Q Consensus 220 td~a~~l~tG~~wlkvPetv~V~L~G~L~~gV~aKDviL~li~~l~~~G~~gk~vEF~G~gv~~LS~deR~Tl~NM~~E~ 299 (440)
+|++.+|+||++||+|||+|+|+|+|+|++||++|||||+|+++|+.+|++|++|||+|+|+++||+++|||||||++|+
T Consensus 147 td~a~~m~tg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~ii~~l~~~g~~g~~vEf~G~gv~~Ls~~~R~Ti~NMa~E~ 226 (466)
T PRK05478 147 SEVEHVLATQTLLQKKPKTMKIEVDGKLPPGVTAKDIILAIIGKIGTAGGTGYVIEFAGEAIRALSMEGRMTICNMSIEA 226 (466)
T ss_pred HHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCcceEEEEEECccccccCHHHHhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeccCchhHHHHhhhcCCC-----------CCccccCCCCCcccEEEEEeCCCcceeeecCCCCCCcccccc----
Q 013574 300 GGKNGVVPADGTTFKYLEDKTSL-----------PYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARE---- 364 (440)
Q Consensus 300 GAk~gif~pD~~t~~yL~~~~~~-----------~~~~l~~D~dA~Y~~~i~iDLs~LeP~VA~P~sPdnv~~v~e---- 364 (440)
||++|+||+|++|++||+.|+.+ .|+.+.+|+||.|+++++||||+|||+||+|++|||+.|++|
T Consensus 227 GA~~~i~~~De~t~~yl~~r~~~~~~~~~~~a~~~~~~l~~D~~a~Y~~~i~iDls~leP~va~P~~P~n~~~v~e~~~~ 306 (466)
T PRK05478 227 GARAGLVAPDETTFEYLKGRPFAPKGEDWDKAVAYWKTLKSDEDAVFDKVVTLDAADIEPQVTWGTNPGQVISIDGKVPD 306 (466)
T ss_pred CceeeeecCCHhHHHHHhcCCccccHHHHHHHHHhhhcccCCCCCceeEEEEEEcccceeeecCCCChhhceEccccCcC
Confidence 99999999999999999987653 467788999999999999999999999999999999999998
Q ss_pred ---------------------------cccceeceEEEecCCCCChHHHHHHHHHHHhcCCcce--ecEEEECccH-HHH
Q 013574 365 ---------------------------CKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASVRAIS--IITFFRQPIE-SYK 414 (440)
Q Consensus 365 ---------------------------~~g~kId~v~IGSCTngr~eDL~~AA~vL~~~G~kv~--Vr~~V~PaS~-V~~ 414 (440)
+++++|||||||||||||+|||++||+||| |+||+ |+++|+|+|+ |++
T Consensus 307 ~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~id~~~IGSCTNg~~~dl~~aA~ilk--G~kv~~~V~~~v~PgS~~V~~ 384 (466)
T PRK05478 307 PEDFADPVKRASAERALAYMGLKPGTPITDIKIDKVFIGSCTNSRIEDLRAAAAVVK--GRKVAPGVRALVVPGSGLVKA 384 (466)
T ss_pred hhhhcchhhhhhhhhhhhhcccccCCccCCCeEEEEEEecCCCCCcHHHHHHHHHhc--CCCCCCCceEEEECCCHHHHH
Confidence 688999999999999999999999999999 99997 9999999999 999
Q ss_pred HHhhcccccc
Q 013574 415 NLLHPSLNEM 424 (440)
Q Consensus 415 ~~l~~G~~~~ 424 (440)
+++++|+++.
T Consensus 385 ~~~~~Gl~~~ 394 (466)
T PRK05478 385 QAEAEGLDKI 394 (466)
T ss_pred HHHHCCcHHH
Confidence 9999999863
No 9
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate. Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes.
Probab=100.00 E-value=3.6e-106 Score=823.69 Aligned_cols=312 Identities=47% Similarity=0.775 Sum_probs=302.3
Q ss_pred EEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCCHHHHHHHHHHHHHHHHcCcceeeecccCCCcccCCC
Q 013574 97 ILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPD 176 (440)
Q Consensus 97 ~v~~hD~tgp~~~~~~~~e~G~~~~v~dp~kvv~~~DH~vp~~~~~~~~~~~~lr~fak~~gi~~f~d~~~~~~~~~~pp 176 (440)
++|+||.|+|++++.|++ +|. .++|||+|+++++||++|+.+.+.+++++++|+||+++||+ ||++.
T Consensus 1 ~~~~hD~t~p~a~~~~~~-~g~-~~v~dp~k~~~~~DH~vp~~~~~~~~~~~~~r~~a~~~gi~-~~~~~---------- 67 (382)
T cd01583 1 LHLVHDVTSPQAFEGLRE-AGR-EKVWDPEKIVAVFDHNVPTPDIKAAEQVKTLRKFAKEFGIN-FFDVG---------- 67 (382)
T ss_pred CEEEEeccHHHHHHHHHH-hCC-cccCCCCceEEEcCCCCCCCCHHHHHHHHHHHHHHHHhCcc-cccCC----------
Confidence 478999999999999964 774 68999999999999999999999999999999999999995 67652
Q ss_pred CCeeeeeeecccceecCCceEEecCCCCccCCcccceeccCCchhhhhhhccceEEeecCCceeEEEEeeCCCCccHhHH
Q 013574 177 YKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDL 256 (440)
Q Consensus 177 g~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GAlGala~GvG~td~a~~l~tG~~wlkvPetv~V~L~G~L~~gV~aKDv 256 (440)
++|||||+++|+|+++||++++|+||||||+||||+||||+|+||++.+|+||++||||||+|+|+|+|+||+||++|||
T Consensus 68 g~GI~H~v~~E~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~a~~latg~~w~~vPeti~v~l~G~l~~gV~aKDv 147 (382)
T cd01583 68 RQGICHVILPEKGLTLPGMTIVGGDSHTCTHGAFGAFATGIGTTDVAHVLATGKLWFRVPETMRVNVEGKLPPGVTAKDV 147 (382)
T ss_pred CCCEeeEEeccccEecCCcEEEecCCCcccCCeeeeEEEccCHHHHHHHHhcCCeeeeCCcEEEEEEEeecCCCcCHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccCceEEEEecCcccCCChhhhhhhhhhccccCceeeeccCchhHHHHhhhcCCCCCccccCCCCCccc
Q 013574 257 ILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFL 336 (440)
Q Consensus 257 iL~li~~l~~~G~~gk~vEF~G~gv~~LS~deR~Tl~NM~~E~GAk~gif~pD~~t~~yL~~~~~~~~~~l~~D~dA~Y~ 336 (440)
||+||++|+.+|++||+|||+|++|++||+++|||||||++|+|||+|+||||++|++||+.|++++|+.+++|+||.|+
T Consensus 148 iL~ii~~lg~~g~~g~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~gi~~~De~t~~yL~~~~~~~~~~~~~D~~a~Y~ 227 (382)
T cd01583 148 ILYIIGKIGVDGATYKAMEFAGEAIESLSMEERMTLCNMAIEAGAKAGIVAPDETTFEYLKGRGKAYWKELKSDEDAEYD 227 (382)
T ss_pred HHHHHHHhccCCccceEEEEEcCccccCCHHHHhhHhccccccCceEEEecCChHHHHHHHhcCccchhhcCCCCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcceeeecCCCCCCcccccccccceeceEEEecCCCCChHHHHHHHHHHHhcCCcce--ecEEEECccH-HH
Q 013574 337 SEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASVRAIS--IITFFRQPIE-SY 413 (440)
Q Consensus 337 ~~i~iDLs~LeP~VA~P~sPdnv~~v~e~~g~kId~v~IGSCTngr~eDL~~AA~vL~~~G~kv~--Vr~~V~PaS~-V~ 413 (440)
++++||||+|||+||+|++|||+.|++|+++++|||||||||||||+|||++||+||| |+||+ ||++|+|+|+ ||
T Consensus 228 ~~~~iDls~leP~va~P~~P~nv~~v~e~~~~~Id~v~IGSCTNgr~eDl~~AA~iLk--G~kv~~~Vr~~v~P~S~~V~ 305 (382)
T cd01583 228 KVVEIDASELEPQVAWPHSPDNVVPVSEVEGIKIDQVFIGSCTNGRLEDLRAAAEILK--GRKVADGVRLIVVPASQRVY 305 (382)
T ss_pred EEEEEEcccceeeEecCCCccceEECcccCCcceeEEEEeccCCCChHHHHHHHHHhc--CCCCCCCccEEEECCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 99997 9999999999 99
Q ss_pred HHHhhccccc
Q 013574 414 KNLLHPSLNE 423 (440)
Q Consensus 414 ~~~l~~G~~~ 423 (440)
++++++||++
T Consensus 306 ~~~~~~G~~~ 315 (382)
T cd01583 306 KQAEKEGLIE 315 (382)
T ss_pred HHHHHCCcHH
Confidence 9999999976
No 10
>TIGR00139 h_aconitase homoaconitase. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain.
Probab=100.00 E-value=1.6e-104 Score=858.02 Aligned_cols=340 Identities=28% Similarity=0.473 Sum_probs=321.3
Q ss_pred CCcHHHHHHHHhc-----CCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCCHH
Q 013574 68 AMTLTEKIFSRAS-----EKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDER 142 (440)
Q Consensus 68 ~mTl~EKIla~~~-----~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~G~~~~v~dp~kvv~~~DH~vp~~~~~ 142 (440)
||||+||||++|+ |+ .|+|||+|+++||++|+||.|||++++ |+ ++| ..+||+|+++++++||++|+.+.+
T Consensus 1 ~~Tl~EKIl~~h~v~~~~g~-~v~~G~~i~i~vD~~l~hD~t~p~~~~-~~-~~g-~~~V~~p~~~v~~~DH~v~~~~~~ 76 (712)
T TIGR00139 1 GQNLTEKIVQKYAVGLPEGK-FVHSGDYVSIKPAHCMSHDNSWPCALK-FM-GIG-ASKIHNPDQIVMTLDHDIQNKSDK 76 (712)
T ss_pred CCCHHHHHHHHhcccccCCc-ccCCCCEEEEecCEEEEEeccHHHHHH-HH-HcC-CCccCCCCCEEEEcCCCCCCCCHH
Confidence 5899999999998 44 588999999999999999999999887 54 488 489999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCcceeeecccCCCcccCCCCCeeeeeeecccceecCCceEEecCCCCccCCcccceeccCCchhh
Q 013574 143 ANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDA 222 (440)
Q Consensus 143 ~~~~~~~lr~fak~~gi~~f~d~~~~~~~~~~ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GAlGala~GvG~td~ 222 (440)
++++|+++|+|||+|||+ ||+ ||+|||||++.|+||++||+++||+||||||+|||||||||+|+||+
T Consensus 77 ~~~~~~~l~~fAkk~Gi~-f~~-----------~g~GI~Hqv~~E~g~a~PG~~ivGsDSHT~t~GalGala~GvG~tDv 144 (712)
T TIGR00139 77 NLKKYKNIEEFAKKHGID-FYP-----------AGRGIGHQIMIEEGFAFPGNLAVASDSHSNMYGGLGCLGTPIVRTDA 144 (712)
T ss_pred HHHHHHHHHHHHHHhCCe-EEC-----------CCCCeEeEeecccCcccCCeEEEccCcCcCccchhhheeeccchHHH
Confidence 999999999999999995 664 56899999999999999999999999999999999999999999999
Q ss_pred hhhhccceEEeecCCceeEEEEeeCCCCccHhHHHHHHHHHhcccccCceEEEEec--CcccCCChhhhhhhhhhccccC
Q 013574 223 GFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVG--TTVERLSMEERMTLCNMVVEAG 300 (440)
Q Consensus 223 a~~l~tG~~wlkvPetv~V~L~G~L~~gV~aKDviL~li~~l~~~G~~gk~vEF~G--~gv~~LS~deR~Tl~NM~~E~G 300 (440)
+.+|+||++||+|||+|+|+|+|+||+||++|||||+|+++|+++|++|++|||+| +|+++||+++|||||||++|+|
T Consensus 145 a~amatg~~w~~vPe~v~V~ltG~L~~gV~aKDviL~l~~~l~~~g~~g~~iEf~G~~~gv~~Ls~~~R~TI~NM~~E~G 224 (712)
T TIGR00139 145 AAIWATGKTWWQIPPVAKVEFKGQLPPGVSGKDIIVALCGLFNKDDVLNHAIEFTGSEDSLNALPIDHRLTIANMTTEWG 224 (712)
T ss_pred HHHHhhCCEeccCCCEEEEEEecccCCCCCHHHHHHHHHHHhccCCcceEEEEEecCcchhhcCCHHHHhhHhhhhHhhC
Confidence 99999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ceeeeccCchhHHHHhhhcCCC--------------------------CCccccCCCCCcccEEEEEeCCCcceeeecCC
Q 013574 301 GKNGVVPADGTTFKYLEDKTSL--------------------------PYEPVYSDEKASFLSEYRFDISKLEPLVAKPH 354 (440)
Q Consensus 301 Ak~gif~pD~~t~~yL~~~~~~--------------------------~~~~l~~D~dA~Y~~~i~iDLs~LeP~VA~P~ 354 (440)
|++|+||+|++|++||+.+++. .|..+.+|+||.|+++++||||+|+|+||+|+
T Consensus 225 A~tgifp~De~t~~yL~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~l~aD~~A~Y~~~~~iDLs~leP~vA~P~ 304 (712)
T TIGR00139 225 ALSGLFPIDKTLIDWLKGKATLAALGLADGPFINPAAERFTHPALEEKAEIPLKADKDAHYAKELFIDLASLSHYVSGPN 304 (712)
T ss_pred ceeeEecCChHHHHHHHhcCcccccccccccccchhHHHHHHHHHHHHhhccCCCCCCCCEEEEEEEEcccceeeeeCCC
Confidence 9999999999999999987521 12567899999999999999999999999999
Q ss_pred CCCCccccccc--ccceeceEEEecCCCCChHHHHHHHHHHHh-------cCCcce--ecEEEECccH-HHHHHhhcccc
Q 013574 355 SPDNRALAREC--KDVKIDRVYIGSCTGGKTEDFLAAAKVFLA-------SVRAIS--IITFFRQPIE-SYKNLLHPSLN 422 (440)
Q Consensus 355 sPdnv~~v~e~--~g~kId~v~IGSCTngr~eDL~~AA~vL~~-------~G~kv~--Vr~~V~PaS~-V~~~~l~~G~~ 422 (440)
+|+|+.|++++ ++++|||||||||||||+|||++||+||++ +||||+ |+++|+|+|+ |+++++++|++
T Consensus 305 ~p~~~~~v~el~~~~~~Id~~~IGSCTN~r~~Dl~~AA~ilk~a~~~~gg~~rkV~p~V~~~v~PgS~~V~~~a~~~Gl~ 384 (712)
T TIGR00139 305 SVKVANPLKDLEAQDIKIDKAYLVSCTNSRASDIAAAADVFCEAADKNGGKINKIAPGVEFYIAAASIEEEAAAEGNGAW 384 (712)
T ss_pred CCCCcCcHHHhhhcCceeeeEEEecCCCCCcHHHHHHHHHHHhhhhhcCCcccccCCCceEEEeCCCHHHHHHHHHCCcH
Confidence 99999999999 899999999999999999999999999983 348887 9999999999 99999999997
Q ss_pred c
Q 013574 423 E 423 (440)
Q Consensus 423 ~ 423 (440)
+
T Consensus 385 ~ 385 (712)
T TIGR00139 385 E 385 (712)
T ss_pred H
Confidence 6
No 11
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type. This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized.
Probab=100.00 E-value=5.1e-104 Score=853.23 Aligned_cols=337 Identities=31% Similarity=0.476 Sum_probs=324.0
Q ss_pred cHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCCHHHHHHHHH
Q 013574 70 TLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDI 149 (440)
Q Consensus 70 Tl~EKIla~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~G~~~~v~dp~kvv~~~DH~vp~~~~~~~~~~~~ 149 (440)
||+||||++|+++..+++|++|+++||++++||.|+|+++..|++ +|. +++| |+++++++||++|+.+.+++++|++
T Consensus 1 Tl~eKIl~~h~~~~~~~~G~~v~~~vD~v~~hD~Tg~~a~~~~~~-~g~-~~v~-~~~~~~~~DH~~~~~d~~~a~~~~~ 77 (658)
T TIGR01342 1 TLAEKIIDDHLVEGDLEPGEEIAIEIDQTLSQDATGTMCWLEFEA-LEM-DEVK-TELAAQYCDHNMLQFDFKNADDHKF 77 (658)
T ss_pred CHHHHHHHHhhCCCCCCCCCEEEEEccEEEEeccchHHHHHHHHH-cCC-CccC-CCCeEEECCCCCCCCChhhHHHHHH
Confidence 899999999999888999999999999999999999999999965 774 6776 8999999999999999999999999
Q ss_pred HHHHHHHcCcceeeecccCCCcccCCCCCeeeeeeecccceecCCceEEecCCCCccCCcccceeccCCchhhhhhhccc
Q 013574 150 LRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTG 229 (440)
Q Consensus 150 lr~fak~~gi~~f~d~~~~~~~~~~ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GAlGala~GvG~td~a~~l~tG 229 (440)
+|+||++||+. ||+ ||+|||||++.|+ +++||+++||+||||||+||||+||||+|++|++.+|+||
T Consensus 78 l~~~a~~~gi~-~~~-----------pg~GI~Hqv~~E~-~a~PG~~ivGtDSHT~t~GalG~la~GvG~td~a~~matg 144 (658)
T TIGR01342 78 LMSAAGKFGAW-FSK-----------PGNGICHNVHKEN-FAAPGKTLLGSDSHTPTAGGLGMLAIGAGGIDIAAAMAGE 144 (658)
T ss_pred HHHHHHHhCCe-EEC-----------CCCCEEeeEchhh-ccCCCCEEEecCcCcCCCCcccccEEccCHHHHHHHHhCC
Confidence 99999999995 664 5789999999887 9999999999999999999999999999999999999999
Q ss_pred eEEeecCCceeEEEEeeCCCCccHhHHHHHHHHHhcccccCceEEEEecCcccCCChhhhhhhhhhccccCceeeeccCc
Q 013574 230 KVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPAD 309 (440)
Q Consensus 230 ~~wlkvPetv~V~L~G~L~~gV~aKDviL~li~~l~~~G~~gk~vEF~G~gv~~LS~deR~Tl~NM~~E~GAk~gif~pD 309 (440)
++||+|||+|+|+|+|+|++||++|||||+|+++|+++|++|++|||+|+|+++||+++|||||||++|+||++|+||+|
T Consensus 145 ~~~~~vPe~i~V~l~G~l~~gV~aKDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~Ti~NM~~E~GA~~~if~~D 224 (658)
T TIGR01342 145 AFYLEMPEIVGVHLEGELPEWATAKDIILELLRRLSVKGGLGKIFEYFGEGVEELSVPERATITNMGAELGATSSIFPSD 224 (658)
T ss_pred cEEccCCcEEEEEEecccCCCcCHHHHHHHHHHHhcccCcceEEEEEecCCcCccCHHHHhhhhccchhhCceEEEEcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcCCC-CCccccCCCCCcccEEEEEeCCCcceeeecCCCCCCcccccccccceeceEEEecCCCCChHHHHH
Q 013574 310 GTTFKYLEDKTSL-PYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLA 388 (440)
Q Consensus 310 ~~t~~yL~~~~~~-~~~~l~~D~dA~Y~~~i~iDLs~LeP~VA~P~sPdnv~~v~e~~g~kId~v~IGSCTngr~eDL~~ 388 (440)
++|++||+.+++. +|..+.+|+||.|+++++||||+|||+||+|++|||+.||+|++|++|||||||||||||+|||++
T Consensus 225 ~~t~~yl~~~~r~~~~~~l~~D~~a~Y~~~i~iDls~leP~va~P~~Pd~v~~v~e~~g~~id~v~IGSCTn~~~~Dl~~ 304 (658)
T TIGR01342 225 DITEAWLAAFDREDDFVDLLADADAEYADEIEIDLSDLEPLIAEPHMPDNVVPVREIAGIEVDQVMIGSCTNGAFEDLLP 304 (658)
T ss_pred HHHHHHHHhcCCchheeeccCCCCCcEEEEEEEEccceeeeeeCCCCCCCeeEhHHhCCceeeeEEEeCCCCCChHHHHH
Confidence 9999999998764 588899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcce--ecEEEECccH-HHHHHhhcccccc
Q 013574 389 AAKVFLASVRAIS--IITFFRQPIE-SYKNLLHPSLNEM 424 (440)
Q Consensus 389 AA~vL~~~G~kv~--Vr~~V~PaS~-V~~~~l~~G~~~~ 424 (440)
||+||+ |+||+ |+++|+|+|+ |+++++++|+++-
T Consensus 305 aA~il~--G~~v~~~v~~~v~PgS~~V~~~~~~~G~~~~ 341 (658)
T TIGR01342 305 AAKLLE--GREVHKDTEFAVAPGSKQALELIAQEGALAE 341 (658)
T ss_pred HHHHhC--CCccCCCccEEEeCCcHHHHHHHHHcCcHHH
Confidence 999999 99997 9999999999 9999999999763
No 12
>PRK07229 aconitate hydratase; Validated
Probab=100.00 E-value=1.2e-103 Score=850.76 Aligned_cols=340 Identities=30% Similarity=0.506 Sum_probs=326.2
Q ss_pred CCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCCHHHHHH
Q 013574 67 NAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRN 146 (440)
Q Consensus 67 ~~mTl~EKIla~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~G~~~~v~dp~kvv~~~DH~vp~~~~~~~~~ 146 (440)
|||||+||||++|+++..+++|+.|+++||++++||.|+|+++..|++ +|. +++|+|.++ +++||++|+.+.++++.
T Consensus 1 m~~Tl~eKIl~~h~~~~~v~~G~~v~~~vd~v~~~D~t~~~a~~~~~~-~G~-~~~~~p~~~-~~~DH~~~~~~~~~~~~ 77 (646)
T PRK07229 1 MGLTLTEKILYAHLVEGELEPGEEIAIRIDQTLTQDATGTMAYLQFEA-MGL-DRVKTELSV-QYVDHNLLQADFENADD 77 (646)
T ss_pred CCcCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEeccchHHHHHHHHH-cCC-CcCCCCCeE-EECCCCCCCCChhhHHH
Confidence 689999999999999877999999999999999999999999999965 884 789999776 78999999999999999
Q ss_pred HHHHHHHHHHcCcceeeecccCCCcccCCCCCeeeeeeecccceecCCceEEecCCCCccCCcccceeccCCchhhhhhh
Q 013574 147 VDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVL 226 (440)
Q Consensus 147 ~~~lr~fak~~gi~~f~d~~~~~~~~~~ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GAlGala~GvG~td~a~~l 226 (440)
|+++|+|+|++|| +|| |||+|||||++.|+ +++||+++|||||||||+||||+||||+|++|++.+|
T Consensus 78 ~~~l~~~a~~~gi-~~~-----------~~g~GI~Hqv~~E~-~a~PG~~ivGtDSHT~~~GalG~la~GvG~~d~~~~m 144 (646)
T PRK07229 78 HRFLQSVAAKYGI-YFS-----------KPGNGICHQVHLER-FAFPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAM 144 (646)
T ss_pred HHHHHHHHHHhCC-eEE-----------CCCCCCcceehhhh-ccCCCCEEEeCCCCcCcCCcccccEEccCHHHHHHHH
Confidence 9999999999999 466 35789999999987 9999999999999999999999999999999999999
Q ss_pred ccceEEeecCCceeEEEEeeCCCCccHhHHHHHHHHHhcccccCceEEEEecCcccCCChhhhhhhhhhccccCceeeec
Q 013574 227 GTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVV 306 (440)
Q Consensus 227 ~tG~~wlkvPetv~V~L~G~L~~gV~aKDviL~li~~l~~~G~~gk~vEF~G~gv~~LS~deR~Tl~NM~~E~GAk~gif 306 (440)
+||++||+|||+|+|+|+|+|++||++|||||+|+++|+.+|++|++|||+|+|+++||+++|||||||++|+||++|+|
T Consensus 145 ~~g~~~~~vPe~v~V~l~G~l~~gV~akDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~Ti~NM~~E~GA~~~if 224 (646)
T PRK07229 145 AGGPYYLKMPKVVGVKLTGKLPPWVSAKDVILELLRRLTVKGGVGKIIEYFGPGVATLSVPERATITNMGAELGATTSIF 224 (646)
T ss_pred hcCcEEccCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCccCccceEEEEECcccccccHHHHhhhhccccccCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHhhhcCCC-CCccccCCCCCcccEEEEEeCCCcceeeecCCCCCCcccccccccceeceEEEecCCCCChHH
Q 013574 307 PADGTTFKYLEDKTSL-PYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTED 385 (440)
Q Consensus 307 ~pD~~t~~yL~~~~~~-~~~~l~~D~dA~Y~~~i~iDLs~LeP~VA~P~sPdnv~~v~e~~g~kId~v~IGSCTngr~eD 385 (440)
|+|++|++||+.+++. +|..+.+|++|.|+++++||||+|||+||+|++|||+.|++|+++.+|||||||||||||+||
T Consensus 225 ~~D~~t~~yL~~~gr~~~~~~l~~D~~a~Y~~~i~iDLs~leP~va~P~~Pd~~~pv~e~~~~~I~~a~IGSCTN~~~~D 304 (646)
T PRK07229 225 PSDERTREFLKAQGREDDWVELLADPDAEYDEVIEIDLSELEPLIAGPHSPDNVVPVSEVAGIKVDQVLIGSCTNSSYED 304 (646)
T ss_pred cCcHHHHHHHHhcCCcccceeccCCCCCCeeEEEEEEccceeeeeecCCCccceeEhHHhCCCeEEEEEEecCCCCChHH
Confidence 9999999999998764 578899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcce--ecEEEECccH-HHHHHhhcccccc
Q 013574 386 FLAAAKVFLASVRAIS--IITFFRQPIE-SYKNLLHPSLNEM 424 (440)
Q Consensus 386 L~~AA~vL~~~G~kv~--Vr~~V~PaS~-V~~~~l~~G~~~~ 424 (440)
|++||+||+ |+|++ |+++|+|+|+ |+++++++|+++-
T Consensus 305 l~~aA~iL~--G~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~ 344 (646)
T PRK07229 305 LMRAASILK--GKKVHPKVSLVINPGSRQVLEMLARDGALAD 344 (646)
T ss_pred HHHHHHHhc--CCCCCCCeeEEEeCCCHHHHHHHHHCCcHHH
Confidence 999999999 99997 9999999999 9999999999763
No 13
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Bacterial Aconitase-like catalytic domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This distinct subfamily is found only in bacteria and Archaea. Its exact characteristics are not known.
Probab=100.00 E-value=8.8e-104 Score=804.52 Aligned_cols=311 Identities=30% Similarity=0.492 Sum_probs=299.6
Q ss_pred eEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCCHHHHHHHHHHHHHHHHcCcceeeecccCCCcccCC
Q 013574 96 DILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANP 175 (440)
Q Consensus 96 D~v~~hD~tgp~~~~~~~~e~G~~~~v~dp~kvv~~~DH~vp~~~~~~~~~~~~lr~fak~~gi~~f~d~~~~~~~~~~p 175 (440)
|++|+||.|+|++++.|+ ++|. .++|+| ++++++||++|+.+.+++++++++|+|+|+|||+ ||+
T Consensus 1 D~~~~hD~t~p~a~~~~~-~~g~-~~v~~~-~~~~~~DH~~p~~~~~~a~~~~~lr~~a~~~gi~-~~~----------- 65 (380)
T cd01585 1 DQTLTQDATGTMAYLQFE-AMGV-DRVRTE-LSVSYVDHNTLQTDFENADDHRFLQTVAARYGIY-FSR----------- 65 (380)
T ss_pred CceEEEeccHHHHHHHHH-HcCC-CeeCCC-CeEEEeCCCCCCCChHHHHHHHHHHHHHHHcCCE-EEC-----------
Confidence 789999999999999996 4884 789999 6999999999999999999999999999999995 665
Q ss_pred CCCeeeeeeecccceecCCceEEecCCCCccCCcccceeccCCchhhhhhhccceEEeecCCceeEEEEeeCCCCccHhH
Q 013574 176 DYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKD 255 (440)
Q Consensus 176 pg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GAlGala~GvG~td~a~~l~tG~~wlkvPetv~V~L~G~L~~gV~aKD 255 (440)
|++|||||+++|+ +++||++++|+||||||+||||+||||||+||++.+|+||++||+|||+|+|+|+|+|++||++||
T Consensus 66 ~g~GI~H~v~~E~-~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~latg~~~~~vPetv~V~l~G~l~~gV~aKD 144 (380)
T cd01585 66 PGNGICHQVHLER-FAVPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGEPYYIPMPKVVGVRLTGELPPWVTAKD 144 (380)
T ss_pred CCCCeeeeecHhh-ccCCCCEEEecCcCcCCCCcccccEEccCHHHHHHHHhCCeEeccCCcEEEEEEEccCCCCcCHHH
Confidence 4689999999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccCceEEEEecCcccCCChhhhhhhhhhccccCceeeeccCchhHHHHhhhcCCC-CCccccCCCCCc
Q 013574 256 LILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSL-PYEPVYSDEKAS 334 (440)
Q Consensus 256 viL~li~~l~~~G~~gk~vEF~G~gv~~LS~deR~Tl~NM~~E~GAk~gif~pD~~t~~yL~~~~~~-~~~~l~~D~dA~ 334 (440)
|||+|+++|+.+|++|++|||+|+|+++||+++|||||||++|+|||+|+||||++|++||+.+++. +|+.+.+|+||.
T Consensus 145 viL~li~~lg~~g~~~~~iEf~G~~i~~Ls~~~R~Tl~NMa~E~GA~~gi~~~De~t~~yl~~~gr~~~~~~l~~D~~a~ 224 (380)
T cd01585 145 VILELLRRLTVKGGVGKIFEYTGPGVATLSVPERATITNMGAELGATTSIFPSDERTREFLAAQGREDDWVELAADADAE 224 (380)
T ss_pred HHHHHHHHhCcccccceEEEEeCCcccccCHHHHhhhhccccccCceEEEecCcHHHHHHHHhcCCchhccccCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999998854 688899999999
Q ss_pred ccEEEEEeCCCcceeeecCCCCCCcccccccccceeceEEEecCCCCChHHHHHHHHHHHhcCCcce--ecEEEECccH-
Q 013574 335 FLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASVRAIS--IITFFRQPIE- 411 (440)
Q Consensus 335 Y~~~i~iDLs~LeP~VA~P~sPdnv~~v~e~~g~kId~v~IGSCTngr~eDL~~AA~vL~~~G~kv~--Vr~~V~PaS~- 411 (440)
|+++++||||+|||+||+|++|||+.|++|+++++|||||||||||||+|||++||+||| ||||+ ||++|+|+|+
T Consensus 225 Y~~~i~iDls~leP~va~P~~pd~v~pv~~~~g~~Id~~~IGSCTngr~eDl~~aA~iLk--G~kv~~~V~~~v~P~S~~ 302 (380)
T cd01585 225 YDEEIEIDLSELEPLIARPHSPDNVVPVREVAGIKVDQVAIGSCTNSSYEDLMTVAAILK--GRRVHPHVSMVVAPGSKQ 302 (380)
T ss_pred eEEEEEEEcccceeeecCCCCCCceeEhhhhCCceEEEEEEecCCCCCcHHHHHHHHHHc--CCCCCCCceEEEECCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999 99997 9999999999
Q ss_pred HHHHHhhcccccc
Q 013574 412 SYKNLLHPSLNEM 424 (440)
Q Consensus 412 V~~~~l~~G~~~~ 424 (440)
|+++|+++|+++.
T Consensus 303 V~~~a~~~Gl~~~ 315 (380)
T cd01585 303 VLEMLARNGALAD 315 (380)
T ss_pred HHHHHHHCCcHHH
Confidence 9999999999763
No 14
>PF00330 Aconitase: Aconitase family (aconitate hydratase); InterPro: IPR001030 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents a region containing 3 domains, each with a 3-layer alpha/beta/alpha topology. This regions represents the [4Fe-4S] cluster-binding region found at the N-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA, but in the C-terminal of bacterial AcnB. This domain is also found in the large subunit of isopropylmalate dehydratase (LeuC). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 1L5J_B 1B0M_A 1B0J_A 1B0K_A 7ACN_A 6ACN_A 5ACN_A 3SNP_B 3SN2_A 2B3Y_A ....
Probab=100.00 E-value=1.6e-104 Score=830.54 Aligned_cols=341 Identities=42% Similarity=0.692 Sum_probs=287.8
Q ss_pred cHHHHHHHHhcCCCC-CCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCCH-------
Q 013574 70 TLTEKIFSRASEKPQ-LSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDE------- 141 (440)
Q Consensus 70 Tl~EKIla~~~~~~~-v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~G~~~~v~dp~kvv~~~DH~vp~~~~------- 141 (440)
||+||||++|++... ..+|++|+++||++|+||+|+|++++.|++ +| .++|+|+++++++||++|+.+.
T Consensus 1 Tl~EKI~~~h~~~~~~~~~~~~v~i~~D~~l~hD~Tgp~a~~~l~~-~g--~~v~~p~~v~~~~DH~vp~~~~~~~~~~~ 77 (465)
T PF00330_consen 1 TLAEKILARHAGREVVARGGDIVYIRPDRVLLHDITGPPAFKDLRA-MG--EKVRDPDKVVLVIDHSVPADDIGSANLQI 77 (465)
T ss_dssp -HHHHHHHCCCTHCCHTTTTSEEEE--SEEEEEHHHHHHHHHHHHH-HC--HCCHSTTSEEEE--SS--BSS-HHHHHHH
T ss_pred ChHHHHHHHHhCCCccCCCCeEEEEEeceEEeecccCcccchhHHH-CC--CceecCCCceEEecCccccccccchhcch
Confidence 899999999999886 578899999999999999999999999965 76 5799999999999999999886
Q ss_pred ---HHHHHHHHHHHHHHHcCcceeeecccCCCcccCCCCCeeeeeeecccceecCCceEEecCCCCccCCcccceeccCC
Q 013574 142 ---RANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIG 218 (440)
Q Consensus 142 ---~~~~~~~~lr~fak~~gi~~f~d~~~~~~~~~~ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GAlGala~GvG 218 (440)
++.+.++++|+||+++|+.+| +. ++.|||||+++|+|+++||++|||+||||||+||||+||||||
T Consensus 78 ~~~~n~~~~~~l~~~~~~~gi~~~-~~----------~~~GI~Hqv~~E~g~~~PG~~vvg~DSHT~t~GalGa~a~GvG 146 (465)
T PF00330_consen 78 EDARNRERYRFLRWFAKEFGIKFF-DP----------GGPGICHQVLPEEGLVLPGMTVVGTDSHTCTYGALGAFATGVG 146 (465)
T ss_dssp HHHHCHHHHHHHHHHHHHCTTEEE-ET----------TSSBSHHHHHHHHTT-STTEEEEESSTTGGGGGGGTSEEEE--
T ss_pred hhHHHHHHHHHHHHHHHHcCCcee-cC----------CCCCeeeeeehhhccccceeEEEeCCCCcchhhhceeEEeccC
Confidence 345567899999999999764 43 3459999999999999999999999999999999999999999
Q ss_pred chhhhhhhccceEEeecCCceeEEEEeeCCCCccHhHHHHHHHHHhcccccCceEEEEecCcccCCChhhhhhhhhhccc
Q 013574 219 NTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVE 298 (440)
Q Consensus 219 ~td~a~~l~tG~~wlkvPetv~V~L~G~L~~gV~aKDviL~li~~l~~~G~~gk~vEF~G~gv~~LS~deR~Tl~NM~~E 298 (440)
+||++.+|+||++||+|||+|+|+|+|+|++||++|||||+|+++|+.+|++|++|||+|+||++||+++|||||||++|
T Consensus 147 ~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~~~~vEf~G~~v~~Ls~~~R~Ti~NMa~E 226 (465)
T PF00330_consen 147 STDVAAALATGPLWFRVPETVRVELTGKLPPGVTAKDVILHIIGRLGADGATGKAVEFFGPGVESLSMDDRMTICNMAIE 226 (465)
T ss_dssp HHHHHHHHCTSBEEEE--EEEEEEEES---TT--HHHHHHHHHHHHHCCTTTTEEEEEESGGGGGS-HHHHHHHHHCGGH
T ss_pred HHHHHHHHHhhhhccccCceEEEEEEecCCCCccHHHHHHHHHHhhhhhccCCeEEEEEChhhhhcCHhhhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeeeccCchhHHHHhhhcCCCC-----------CccccCCCCCcccEEEEEeCCCcceeeecCCCCCCccccccc--
Q 013574 299 AGGKNGVVPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAREC-- 365 (440)
Q Consensus 299 ~GAk~gif~pD~~t~~yL~~~~~~~-----------~~~l~~D~dA~Y~~~i~iDLs~LeP~VA~P~sPdnv~~v~e~-- 365 (440)
+||++|+||||++|++||+.+++.+ |+.+++|+||.|+++++||||+|||+||+|++|||+.|++|+
T Consensus 227 ~GA~~g~~~~De~t~~Yl~~~~~~~~~~~~~~~~~~~~~l~~D~dA~Y~~~i~iDls~leP~va~P~~P~~~~~v~e~~~ 306 (465)
T PF00330_consen 227 MGAKTGIFPPDEKTLEYLRGRGRSPEGEELDEAYAKWQGLKSDPDAEYDKVIEIDLSELEPQVAGPHSPDNVVPVSEVAP 306 (465)
T ss_dssp HTBSEEEE-B-HHHHHHHHHTTHHHHHHHHHHHHHHHGCSS--TT---SEEEEEEGGG-SSEEE-SSSTTSEEEHHHHHH
T ss_pred cCceEEEecCcHHHHHHHHhhhhhhHHHHHHHhhhhhhhccCCCccCeeEEEEEEcCccccccccCCCCccccccccccc
Confidence 9999999999999999999998753 467899999999999999999999999999999999998764
Q ss_pred -----------------------------ccceeceEEEecCCCCChHHHHHHHHHHHhc-CCcce--ecEEEECccH-H
Q 013574 366 -----------------------------KDVKIDRVYIGSCTGGKTEDFLAAAKVFLAS-VRAIS--IITFFRQPIE-S 412 (440)
Q Consensus 366 -----------------------------~g~kId~v~IGSCTngr~eDL~~AA~vL~~~-G~kv~--Vr~~V~PaS~-V 412 (440)
++++||+||||||||||+|||++||+||+++ .+|++ |+++|+|+|+ |
T Consensus 307 ~~~~~~~~v~~~~~~kal~y~~~~~~~~~~~~~i~~~~IgSCTn~~~~dl~~aA~il~~~~~~~v~~~v~~~v~PgS~~v 386 (465)
T PF00330_consen 307 DFASILDPVEREAAEKALDYMGLKPGQELEGTKIDQAFIGSCTNGRNEDLRAAAGILKGKAVLKVAPGVKTSVVPGSRQV 386 (465)
T ss_dssp HHHHHH----CCGCC-EEEECHTTEEEEEETTBEEEEEEETTTSCTHHHHHHHHHHHHHHHCTTS-TSSEEEEE-SBHHH
T ss_pred ccccccccccccccccccccccccccccccceeeeEEEEcCCcCCCHHHHHHHHHHhhchhhccCcceeEEEEcCCCHHH
Confidence 2579999999999999999999999999943 12665 9999999999 9
Q ss_pred HHHHhhcccccc
Q 013574 413 YKNLLHPSLNEM 424 (440)
Q Consensus 413 ~~~~l~~G~~~~ 424 (440)
++++.++|+++.
T Consensus 387 ~~~~~~~Gl~~~ 398 (465)
T PF00330_consen 387 YEQLEREGLLEI 398 (465)
T ss_dssp HHHHHHTTHHHH
T ss_pred HHHHHHcCCchh
Confidence 999999999863
No 15
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase B catalytic domain. Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase has an active (4FE-4S) and an inactive (3FE-4S) form. The active cluster is part of the catalytic site that interconverts citrate, cis-aconitase and isocitrate. The domain architecture of aconitase B is different from other aconitases in that the catalytic domain is normally found at C-terminus for other aconitases, but it is at N-terminus for B family. It also has a HEAT domain before domain 4 which plays a role in protein-protein interaction. This alignment is the core domain including domains 1,2 and 3.
Probab=100.00 E-value=4.6e-103 Score=809.58 Aligned_cols=329 Identities=22% Similarity=0.279 Sum_probs=309.3
Q ss_pred HHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCCHHHHHHHHHH
Q 013574 71 LTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDIL 150 (440)
Q Consensus 71 l~EKIla~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~G~~~~v~dp~kvv~~~DH~vp~~~~~~~~~~~~l 150 (440)
|+||||++|++++.|+|||+|++++|++|+||.|+|++++.|++ +| .++|||+|+++++||++|+.+.+++++|+++
T Consensus 1 ~~EKIl~~~~~~~~v~~G~~v~~~vD~~~~~D~t~p~~~~~f~~-~~--~~v~d~~~~v~~~DH~~p~~~~~~a~~~~~~ 77 (436)
T cd01581 1 LAQKIVGRACGVKGVRPGTYCEPKMTTVGSQDTTGPMTRDELKE-LA--CLGFSADLVMQSFCHTAAYPKPVDVKTHRTL 77 (436)
T ss_pred ChHHHHHHhcCCCCCCCCCEEEEEcCEEEeeccchHHHHHHHHH-cC--CcccCCccEEEEcCCCCCCCCHHHHHHHHHH
Confidence 58999999999988999999999999999999999999999965 76 3899999999999999999999999999999
Q ss_pred HHHHHHcCcceeeecccCCCcccCCCCCeeeeeeecccceecCCceEEecCCCCccCCcccceeccCCchhhhhhhccce
Q 013574 151 RDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGK 230 (440)
Q Consensus 151 r~fak~~gi~~f~d~~~~~~~~~~ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GAlGala~GvG~td~a~~l~tG~ 230 (440)
|+||++||+ +||+. |+|||||+|+| +++||++++|+||||||+|| ||||+|++|++.+|+||+
T Consensus 78 r~fa~~~gi-~~~~~-----------g~GI~Hqv~~e--~~~PG~~ivGtDSHT~t~ga---~a~GvG~td~a~~latG~ 140 (436)
T cd01581 78 PDFISNRGG-VALRP-----------GDGVIHSWLNR--MLLPDTVGTGGDSHTRFPIG---ISFPAGSGLVAFAAATGV 140 (436)
T ss_pred HHHHHHcCC-cEECC-----------CCCeeeeeehh--hccCCceEEeeccccCCCCc---eEEeecHHHHHHHHHhCe
Confidence 999999999 47764 57999999987 58999999999999999986 899999999999999999
Q ss_pred EEeecCCceeEEEEeeCCCCccHhHHHHH----HHHH--------hcccccCceEEEEecCcccCCChhhhhhhhhhccc
Q 013574 231 VLLKVPPTLRFVLDGEMPDYLLAKDLILQ----IIGE--------ISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVE 298 (440)
Q Consensus 231 ~wlkvPetv~V~L~G~L~~gV~aKDviL~----li~~--------l~~~G~~gk~vEF~G~gv~~LS~deR~Tl~NM~~E 298 (440)
+||+|||+|+|+|+|+|++||++|||||+ |+++ ++.+|++|++|||. |+++||+++|||||||++|
T Consensus 141 ~w~~vPeti~V~l~G~l~~gV~aKDviL~i~~~li~~g~l~v~~~~g~~g~~g~~iEf~--Gv~~Ls~~~R~Ti~NMa~E 218 (436)
T cd01581 141 MPLDMPESVLVRFKGKMQPGITLRDLVNAIPYYAIQQGLLTVEKKGKKNVFNGRILEIE--GLPDLKVEQAFELTDASAE 218 (436)
T ss_pred eeeeCCCEEEEEEecccCCCcChhHHHHHHHHHHHhcccccccccCCcccccceEEEEC--CcccCCHhHHHHHHhhhhh
Confidence 99999999999999999999999999997 5777 77788899999996 4999999999999999999
Q ss_pred cCceeeeccCchhH-HHHhhhc----------CC-----------------CCCccccCCCCCcccEEEEEeCCCc-cee
Q 013574 299 AGGKNGVVPADGTT-FKYLEDK----------TS-----------------LPYEPVYSDEKASFLSEYRFDISKL-EPL 349 (440)
Q Consensus 299 ~GAk~gif~pD~~t-~~yL~~~----------~~-----------------~~~~~l~~D~dA~Y~~~i~iDLs~L-eP~ 349 (440)
+||++|+||+|++| ++||+.+ ++ ++++.+++|+||.|+++++||||+| ||+
T Consensus 219 ~GA~~gif~~De~t~~~yL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~D~da~Y~~~ieiDls~l~eP~ 298 (436)
T cd01581 219 RSAAACTVRLDKEPVIEYLESNVVLMKIMIANGYDDARTLLRRIIAMEEWLANPPLLEPDADAEYAAVIEIDLDDIKEPI 298 (436)
T ss_pred hCceEEEecCCHhHHHHHHHhCccccccccccCcccccchhHHHHHHHHHHhhcccccCCCCCceEEEEEEEhHhCCCCe
Confidence 99999999999988 8999987 21 1345688999999999999999999 999
Q ss_pred eecCCCCCCcccccccccceeceEEEecCCCCChHHHHHHHHHHHhcCCcce-ecEEEECccH-HHHHHhhcccccc
Q 013574 350 VAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASVRAIS-IITFFRQPIE-SYKNLLHPSLNEM 424 (440)
Q Consensus 350 VA~P~sPdnv~~v~e~~g~kId~v~IGSCTngr~eDL~~AA~vL~~~G~kv~-Vr~~V~PaS~-V~~~~l~~G~~~~ 424 (440)
||+|++|||++|++|+++++|||+||||||| |+|||++||+||| |+|+. ||++|+|+|+ ||++++++|+++.
T Consensus 299 VA~P~~pdn~~~v~e~~g~~id~~~IGSCTn-r~eDl~~AA~ilk--g~~~~~vr~~v~P~S~~V~~~~~~~G~~~~ 372 (436)
T cd01581 299 LACPNDPDDVKLLSEVAGKKIDEVFIGSCMT-NIGHFRAAAKILR--GKEFKPTRLWVAPPTRMDWAILQEEGYYSI 372 (436)
T ss_pred ecCCCChhhceEhHHhcCCccceEEEecCCC-CHHHHHHHHHHHc--CCCCCCCCEEEECCCHHHHHHHHHcChHHH
Confidence 9999999999999999999999999999999 9999999999999 88876 9999999999 9999999999864
No 16
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial. This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase.
Probab=100.00 E-value=7.8e-102 Score=842.95 Aligned_cols=341 Identities=27% Similarity=0.380 Sum_probs=315.8
Q ss_pred CCCcHHHHHHHHhcCCCC----------CCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCC
Q 013574 67 NAMTLTEKIFSRASEKPQ----------LSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYI 136 (440)
Q Consensus 67 ~~mTl~EKIla~~~~~~~----------v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~G~~~~v~dp~kvv~~~DH~v 136 (440)
|||||+||||++|++++. |++||+|+++||++|+||.|+|+++..|++ +| ..++|+|. .+++||++
T Consensus 18 ~~~Tl~EKIl~~h~~~~~~~~~~~~~~~v~~g~~v~~~~d~v~~~D~tg~~ai~~f~~-~g-~~~v~~P~--~v~~DH~~ 93 (745)
T TIGR01340 18 RPLTLAEKILYSHLDDPEESLLSQDIGDVRGKSYLKLRPDRVAMQDASAQMALLQFMT-CG-LPQVAVPA--SIHCDHLI 93 (745)
T ss_pred CCcCHHHHHHHHHhCCcccccccccccccCCCCEEEEeccEEEEeccccHHHHHHHHH-cC-CCCCCCCC--eEEeCCCC
Confidence 799999999999998763 689999999999999999999999999965 77 47999996 45689999
Q ss_pred CCC-----CHH-----HHHHHHHHHHHHHHcCcceeeecccCCCcccCCCCCeeeeeeecccceecCCceEEecCCCCcc
Q 013574 137 FTS-----DER-----ANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCT 206 (440)
Q Consensus 137 p~~-----~~~-----~~~~~~~lr~fak~~gi~~f~d~~~~~~~~~~ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t 206 (440)
|+. +.+ +.++|+++|+||++||| +||+ ||+|||||++.|+ +++||+++|||||||||
T Consensus 94 ~~~~~~~~~~~~a~~~N~e~~~~lr~~a~~~gi-~~~~-----------~g~GI~Hqv~~E~-~a~PG~~ivGtDSHT~t 160 (745)
T TIGR01340 94 VGQKGGDKDLARAIATNKEVFDFLESAGKKYGI-GFWK-----------PGSGIIHQIVLEN-YAFPGLMMLGTDSHTPN 160 (745)
T ss_pred ccccCccccHHHHhHhHHHHHHHHHHHHHHCCC-EEEC-----------CCCCeeceEchhh-ccCCCCeEEccCCCccc
Confidence 876 433 44779999999999999 4664 5689999999876 99999999999999999
Q ss_pred CCcccceeccCCchhhhhhhccceEEeecCCceeEEEEeeCCCCccHhHHHHHHHHHhcccccCceEEEEecCcccCCCh
Q 013574 207 AGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSM 286 (440)
Q Consensus 207 ~GAlGala~GvG~td~a~~l~tG~~wlkvPetv~V~L~G~L~~gV~aKDviL~li~~l~~~G~~gk~vEF~G~gv~~LS~ 286 (440)
+||||+||||||+||++++|+++.+||+|||+|+|+|+|+|++||++|||||+|+++|+++|++|++|||+|+|+++||+
T Consensus 161 ~GalG~la~GvG~td~a~~m~G~~~~~~vPe~i~V~l~G~l~~gVtaKDviL~ii~~l~~~G~~g~~vEf~G~gv~~Ls~ 240 (745)
T TIGR01340 161 AGGLGTIAIGVGGADAVDALAGAPWELKAPKILGVKLTGKLNGWTSPKDIILKLAGLLTVRGGTGYIVEYFGPGVESLSC 240 (745)
T ss_pred ccchheeEeccCHHHHHHHHhCCeeeccCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEeCcccccCCH
Confidence 99999999999999999999977777999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhccccCceeeeccCchhHHHHhhhcCCCC-----------CccccCCCCCcccEEEEEeCCCcceeeecCCC
Q 013574 287 EERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHS 355 (440)
Q Consensus 287 deR~Tl~NM~~E~GAk~gif~pD~~t~~yL~~~~~~~-----------~~~l~~D~dA~Y~~~i~iDLs~LeP~VA~P~s 355 (440)
++|||||||++|+||++|+||+|++|++||+.+++.+ |+.+++|+||.|+++++||||+|||+||+|++
T Consensus 241 ~~R~Ti~NMa~E~GA~~gifp~De~T~~yL~~~gr~~~~~~~~~~~~~~~~~~~D~~a~Y~~~i~iDls~leP~vA~P~~ 320 (745)
T TIGR01340 241 TGMATICNMGAEIGATTSIFPFNEAMSRYLKATNRAQIAEDAKTGQYSFFKLKADEGAQYDELIEIDLSKLEPHINGPFT 320 (745)
T ss_pred HHhhhhhhcccccCceeEEeCCChHHHHHHHhcCCchhhhHHHHHHHhcccccCCCCCCeEEEEEEEccceeEeecCCCC
Confidence 9999999999999999999999999999999988753 56788999999999999999999999999999
Q ss_pred CCCccccccccc--------ceeceEEEecCCCCChHHHHHHHHHHHh-cCCcce--ecEEEECccH-HHHHHhhccccc
Q 013574 356 PDNRALARECKD--------VKIDRVYIGSCTGGKTEDFLAAAKVFLA-SVRAIS--IITFFRQPIE-SYKNLLHPSLNE 423 (440)
Q Consensus 356 Pdnv~~v~e~~g--------~kId~v~IGSCTngr~eDL~~AA~vL~~-~G~kv~--Vr~~V~PaS~-V~~~~l~~G~~~ 423 (440)
|||+.||+|+.+ ++|||||||||||||+|||++||+|||+ .|++++ |+++|+|||+ |+++++++|+++
T Consensus 321 Pdn~~~v~e~~~~~~~~g~~~~Id~a~IGSCTNgr~~Dl~~AA~ilk~a~~~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~ 400 (745)
T TIGR01340 321 PDLSTPISKFKETVQKNGWPEKLSAGLIGSCTNSSYEDMSRCASIVKDAEQAGLKPKSPFYVTPGSEQIRATLERDGILQ 400 (745)
T ss_pred hhcccChHHhCchhhhcCCCceecEEEEEcCCCCCHHHHHHHHHHhhhhhhCCCCCCCCEEEECCCHHHHHHHHHCCcHH
Confidence 999999999999 7999999999999999999999999994 125554 9999999999 999999999976
Q ss_pred c
Q 013574 424 M 424 (440)
Q Consensus 424 ~ 424 (440)
-
T Consensus 401 ~ 401 (745)
T TIGR01340 401 T 401 (745)
T ss_pred H
Confidence 3
No 17
>PRK11413 putative hydratase; Provisional
Probab=100.00 E-value=1.1e-99 Score=823.95 Aligned_cols=336 Identities=22% Similarity=0.253 Sum_probs=317.1
Q ss_pred CCCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCC--CHHH
Q 013574 66 KNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTS--DERA 143 (440)
Q Consensus 66 ~~~mTl~EKIla~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~G~~~~v~dp~kvv~~~DH~vp~~--~~~~ 143 (440)
.|.+||+||||++|++. .+||+|++++|++++||.|+|++++.|++ +|. .+| |+++++++||++|+. +..+
T Consensus 32 ~~~~TlaeKIL~~h~~~---~~g~~v~~~vD~~~~~D~t~~~~~~~f~~-~G~-~~v--p~~~v~~~DH~~~~~~g~~~n 104 (751)
T PRK11413 32 AKKGTIAWSILSSHNTS---GNMDKLKIKFDSLASHDITFVGIIQTAKA-SGM-ERF--PLPYVLTNCHNSLCAVGGTIN 104 (751)
T ss_pred HhhCCHHHHHHHHhhCC---CCCCEEEEEcceeeeehhhHHHHHHHHHH-cCC-CcC--CCCEEEECCCCCcCCCCCCcc
Confidence 46889999999999985 58999999999999999999999999965 884 677 999999999999998 3445
Q ss_pred HHHHHHHHHHHHHcCcceeeecccCCCcccCCCCCeeeeeeecccceecCCceEEecCCCCccCCcccceeccCCchhhh
Q 013574 144 NRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAG 223 (440)
Q Consensus 144 ~~~~~~lr~fak~~gi~~f~d~~~~~~~~~~ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GAlGala~GvG~td~a 223 (440)
.++|+++|+|||+||+. || ||++|||||++.|+ +++||++++||||||+ +||||+||||+|++|++
T Consensus 105 ~~~~~~~~~~a~k~Gi~-f~-----------~pg~GI~Hqv~~E~-~a~PG~~ivGtDSHT~-~GalG~la~GvGgtd~a 170 (751)
T PRK11413 105 EDDHVFGLSAAQKYGGI-FV-----------PPHIAVIHQYMREM-MAGGGKMILGSDSHTR-YGALGTMAVGEGGGELV 170 (751)
T ss_pred HHHHHHHHHHHHHcCCc-EE-----------CCCCCeECcCchhh-ccCCCcEEEeeCcCcc-cchhhhceeCCChHHHH
Confidence 57999999999999994 66 46789999999887 9999999999999995 99999999999999999
Q ss_pred hhhccceEEeecCCceeEEEEeeCCCCccHhHHHHHHHHHhccccc-CceEEEEecCcccCCChhhhhhhhhhccccCce
Q 013574 224 FVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGA-TYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 302 (440)
Q Consensus 224 ~~l~tG~~wlkvPetv~V~L~G~L~~gV~aKDviL~li~~l~~~G~-~gk~vEF~G~gv~~LS~deR~Tl~NM~~E~GAk 302 (440)
.+|+++++|++|||+|+|+|+|+|++||++|||||+|+++++++|+ +|++|||+|+|+++||+++|||||||++|+||+
T Consensus 171 ~~mag~~~~~kvPe~i~V~LtG~l~~gV~aKDviL~ii~~l~~~G~v~~k~vEF~G~gv~~LS~~~R~TI~NM~~E~GA~ 250 (751)
T PRK11413 171 KQLLNDTYDIDYPGVVAVYLTGKPAPGVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFRNGVDVMTTETTCL 250 (751)
T ss_pred HHHhCCeeeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHHhhcCcccceEEEEECCccccCCHhHHhhhhhcccccCce
Confidence 9999999999999999999999999999999999999999999999 799999999999999999999999999999999
Q ss_pred eeeccCchhHHHHhhhcCCC-CCccccCCCCCcccEEEEEeCCCcceeeecCCCCCCcccccccc---------------
Q 013574 303 NGVVPADGTTFKYLEDKTSL-PYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECK--------------- 366 (440)
Q Consensus 303 ~gif~pD~~t~~yL~~~~~~-~~~~l~~D~dA~Y~~~i~iDLs~LeP~VA~P~sPdnv~~v~e~~--------------- 366 (440)
+|+||+|++|++||+.+++. +|+.+.+|++|.|+++++||||+|||+||+|++|||+.||+|+.
T Consensus 251 ~~ifp~De~t~~yL~~~gr~~~~~~l~~D~~A~Yd~~ieiDLs~leP~VA~P~~Pdnv~~v~e~~~~~~~~~~~~~~~~~ 330 (751)
T PRK11413 251 SSIWQTDEEVHNWLALHGRGQDYCELNPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYEIDELNQNLTDILREVEIESE 330 (751)
T ss_pred EEEecCcHHHHHHHHhCCChhhceeccCCCCCCeeEEEEEEcccceeeecCCCChhhCcChhhcccchhhhcchhhhhhh
Confidence 99999999999999998864 78899999999999999999999999999999999999999984
Q ss_pred ------------------cceeceEEEecCCCCChHHHHHHHHHHHhcCCcce---ecEEEECccH-HHHHHhhcccccc
Q 013574 367 ------------------DVKIDRVYIGSCTGGKTEDFLAAAKVFLASVRAIS---IITFFRQPIE-SYKNLLHPSLNEM 424 (440)
Q Consensus 367 ------------------g~kId~v~IGSCTngr~eDL~~AA~vL~~~G~kv~---Vr~~V~PaS~-V~~~~l~~G~~~~ 424 (440)
+++|||||||||||||+|||++||+||+ |++|+ |+++|+|+|+ ||++++++|+++.
T Consensus 331 ~~~~~~~~~~~~~ki~~~~~~Idq~~IGSCTNg~~eDl~~AA~ILk--gk~v~~~~v~~~V~PgS~~V~~~l~~~G~~~~ 408 (751)
T PRK11413 331 RVAHGKAKLSLLDKIENGRLKVQQGIIAGCSGGNYENVIAAANALR--GQSCGNDTFSLSVYPSSQPVFMDLAKKGVVAD 408 (751)
T ss_pred hhhhhhccccccccccCCCcEeeeEEEecCCCCCHHHHHHHHHHhc--CcccCCCceeEEEECCCHHHHHHHHHcCcHHH
Confidence 8899999999999999999999999999 88996 9999999999 9999999999763
No 18
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Mitochondrial aconitase A catalytic domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=8.7e-100 Score=781.89 Aligned_cols=311 Identities=27% Similarity=0.362 Sum_probs=291.3
Q ss_pred EEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCC-----CHHHH-----HHHHHHHHHHHHcCcceeeecc
Q 013574 97 ILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTS-----DERAN-----RNVDILRDFCMEQNIKYFYDIK 166 (440)
Q Consensus 97 ~v~~hD~tgp~~~~~~~~e~G~~~~v~dp~kvv~~~DH~vp~~-----~~~~~-----~~~~~lr~fak~~gi~~f~d~~ 166 (440)
++|+||.|+|.++..|++ +| ..++|||+ ++++||++|+. +.+.+ ++++++|+|+|++||+ ||+
T Consensus 1 rv~~~D~tg~~a~~~f~~-~g-~~~v~~p~--~~~~DH~~~~~~~~~~~~~~a~~~n~~~~~~~r~~a~~~gi~-~~~-- 73 (412)
T cd01584 1 RVAMQDATAQMALLQFMS-SG-LPKVAVPS--TIHCDHLIEAQVGGEKDLKRAKDINKEVYDFLASAGAKYGIG-FWK-- 73 (412)
T ss_pred CeeEEecccHHHHHHHHH-hC-CCCCCCCC--eEEeCCCccccccCCCchhhhhhhhHHHHHHHHHHHHHcCCe-EEC--
Confidence 479999999999999964 88 47999999 55799999874 64444 5788999999999995 664
Q ss_pred cCCCcccCCCCCeeeeeeecccceecCCceEEecCCCCccCCcccceeccCCchhhhhhhccceEEeecCCceeEEEEee
Q 013574 167 DLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGE 246 (440)
Q Consensus 167 ~~~~~~~~ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GAlGala~GvG~td~a~~l~tG~~wlkvPetv~V~L~G~ 246 (440)
||+|||||+++|+ +++||++++|+||||||+||||+||||||+||++.+|+++.+||+|||+|+|+|+|+
T Consensus 74 ---------~g~GI~Hqv~~E~-~~~PG~~ivG~DSHT~t~GalGa~a~GvG~td~~~~m~g~~~~~~vPe~i~v~l~G~ 143 (412)
T cd01584 74 ---------PGSGIIHQIVLEN-YAFPGLLMIGTDSHTPNAGGLGGIAIGVGGADAVDVMAGIPWELKCPKVIGVKLTGK 143 (412)
T ss_pred ---------CCCCeeceEchhh-ccCCCCeEEeccCCCCCcChhhheeeccCHHHHHHHHhCCeeccCCCCEEEEEEEcc
Confidence 4689999999998 999999999999999999999999999999999999997777799999999999999
Q ss_pred CCCCccHhHHHHHHHHHhcccccCceEEEEecCcccCCChhhhhhhhhhccccCceeeeccCchhHHHHhhhcCCCC---
Q 013574 247 MPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLP--- 323 (440)
Q Consensus 247 L~~gV~aKDviL~li~~l~~~G~~gk~vEF~G~gv~~LS~deR~Tl~NM~~E~GAk~gif~pD~~t~~yL~~~~~~~--- 323 (440)
||+||++|||||+|+++|+++|++|+++||+|+|+++||+++|||||||++|+||++|+||||++|++||+.+++.+
T Consensus 144 l~~gV~aKDliL~ii~~l~~~G~~~~~vEf~G~gi~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~~~~~~~~~ 223 (412)
T cd01584 144 LSGWTSPKDVILKVAGILTVKGGTGAIVEYFGPGVDSLSCTGMGTICNMGAEIGATTSVFPYNERMKKYLKATGRAEIAD 223 (412)
T ss_pred cCCCcCHHHHHHHHHHHhCcCCcceEEEEEECcccccCChhhhcchhhcchhhCceEEEecCChhHHHHHHhcCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred ----C--ccccCCCCCcccEEEEEeCCCcceeeecCCCCCCccccccccc--------ceeceEEEecCCCCChHHHHHH
Q 013574 324 ----Y--EPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKD--------VKIDRVYIGSCTGGKTEDFLAA 389 (440)
Q Consensus 324 ----~--~~l~~D~dA~Y~~~i~iDLs~LeP~VA~P~sPdnv~~v~e~~g--------~kId~v~IGSCTngr~eDL~~A 389 (440)
| +.+++|+||.|+++++||||+|||+||+|++|||+.|++|+.+ ++|||||||||||||+|||++|
T Consensus 224 ~~~~y~~~~l~~D~da~Y~~~i~iDls~leP~va~P~~P~nv~~v~e~~~~~~~~g~~~~Id~a~IGSCTNgr~~Dl~~A 303 (412)
T cd01584 224 LADEFKDDLLVADEGAEYDQLIEINLSELEPHINGPFTPDLATPVSKFKEVAEKNGWPLDLRVGLIGSCTNSSYEDMGRA 303 (412)
T ss_pred HHHHHHhcccCCCCCCCeEEEEEEEcccceEeecCCCChhcCcChhHcChhhhccCCceeEEEEEEeccCCCChHHHHHH
Confidence 5 7889999999999999999999999999999999999999999 7999999999999999999999
Q ss_pred HHHHHh---cCCcceecEEEECccH-HHHHHhhcccccc
Q 013574 390 AKVFLA---SVRAISIITFFRQPIE-SYKNLLHPSLNEM 424 (440)
Q Consensus 390 A~vL~~---~G~kv~Vr~~V~PaS~-V~~~~l~~G~~~~ 424 (440)
|+|||+ +|+|++||++|+|+|+ |+++++++||++.
T Consensus 304 A~ilk~a~~~g~~v~vr~~v~PgS~~V~~~~~~~Gl~~~ 342 (412)
T cd01584 304 ASIAKQALAHGLKCKSIFTITPGSEQIRATIERDGLLQT 342 (412)
T ss_pred HHHHhhHHhCCCCCCCcEEEeCCCHHHHHHHHHCCcHHH
Confidence 999984 7999999999999999 9999999999864
No 19
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=100.00 E-value=6.6e-96 Score=795.91 Aligned_cols=342 Identities=22% Similarity=0.294 Sum_probs=316.7
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCC
Q 013574 57 RRPATTGSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYI 136 (440)
Q Consensus 57 r~~~~~~~~~~~mTl~EKIla~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~G~~~~v~dp~kvv~~~DH~v 136 (440)
+.|..+...+|||||+||||++|+|++.|+||++|++++|.+++||.|||++++.|+ ++|. ++|||+++++++||++
T Consensus 359 ~~~~~~~~~~~g~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~~~~-~lg~--~~~~~d~v~~~~dH~~ 435 (835)
T PRK09238 359 RKPKQPADSGKGFTLAQKMVGRACGVPGVRPGTYCEPKMTTVGSQDTTGPMTRDELK-DLAC--LGFSADLVMQSFCHTA 435 (835)
T ss_pred CCCCCCCcCCCcccHHHHHHHHhcCCCCCCCCCEEEEECCEEEeeccchHHHHHHHH-HcCC--cccCCCcEEEEccCCC
Confidence 444444445689999999999999998899999999999999999999999999996 4873 8999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCcceeeecccCCCcccCCCCCeeeeeeecccceecCCceEEecCCCCccCCcccceecc
Q 013574 137 FTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATG 216 (440)
Q Consensus 137 p~~~~~~~~~~~~lr~fak~~gi~~f~d~~~~~~~~~~ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GAlGala~G 216 (440)
|.++.+.+++|+.+|+|++++|+. ||+ ||+|||||+|. ++++||++++|+||||||+|| ||||
T Consensus 436 p~~~~~~a~~~~~lr~Fa~~~Gi~-~~~-----------pG~GI~H~vl~--~~~~Pg~vivG~DSHT~t~ga---~a~G 498 (835)
T PRK09238 436 AYPKPVDVKTHHTLPDFIMNRGGV-SLR-----------PGDGVIHSWLN--RMLLPDTVGTGGDSHTRFPIG---ISFP 498 (835)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCc-EeC-----------CCCCeeeeccc--ccccCCeEEEecccccCCCCc---eEec
Confidence 999999999999999999999996 465 46899999985 699999999999999999997 8899
Q ss_pred CCchhhhhhhccceEEeecCCceeEEEEeeCCCCccHhHHHHHH----HHH--------hcccccCceEEEEecCcccCC
Q 013574 217 IGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQI----IGE--------ISVAGATYKSMEFVGTTVERL 284 (440)
Q Consensus 217 vG~td~a~~l~tG~~wlkvPetv~V~L~G~L~~gV~aKDviL~l----i~~--------l~~~G~~gk~vEF~G~gv~~L 284 (440)
+|++|+|++|+||++||+|||+|+|+|+|+|++||++|||||+| +++ ++.+|++|+++||. |+++|
T Consensus 499 ~Gs~~vA~a~atG~~~l~vPesv~V~l~G~L~~gVtaKDviL~I~~~~i~~g~ltv~~~~g~~~~~gr~lEf~--Gv~~L 576 (835)
T PRK09238 499 AGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRILEIE--GLPDL 576 (835)
T ss_pred cchHHHHHHHhhCceEEeCCCEEEEEEecccCCCcCHhHHHHHHHHHHHhcccccccccCCccceeeeEEEEc--CcccC
Confidence 99999999999999999999999999999999999999999999 774 66777899999996 59999
Q ss_pred ChhhhhhhhhhccccCceeeecc-CchhHHHHhhhc----------CC-----------------CCCccccCCCCCccc
Q 013574 285 SMEERMTLCNMVVEAGGKNGVVP-ADGTTFKYLEDK----------TS-----------------LPYEPVYSDEKASFL 336 (440)
Q Consensus 285 S~deR~Tl~NM~~E~GAk~gif~-pD~~t~~yL~~~----------~~-----------------~~~~~l~~D~dA~Y~ 336 (440)
|+++|||||||++|+||++|+|+ +|++|++||+.+ ++ +.++.+++|+||+|+
T Consensus 577 sve~R~Tl~NMa~E~GA~~~i~~~~de~t~eYL~~~~~~~~~mi~~g~~~~~~~~~r~~~~~~w~~~~~ll~aD~dA~Y~ 656 (835)
T PRK09238 577 KVEQAFELTDASAERSAAGCTIKLSKEPIIEYLRSNIVLLKWMIAEGYGDARTLERRIAAMEEWLANPELLEADADAEYA 656 (835)
T ss_pred CHHHHHhHhhccHhhCceeceecCChHHHHHHHHhcccccccccccCcccccchhHHHHHHHHHHhhcccccCCCCCceE
Confidence 99999999999999999999999 889999999986 32 123468899999999
Q ss_pred EEEEEeCCCc-ceeeecCCCCCCcccccccccceeceEEEecCCCCChHHHHHHHHHHHhcCCcce--ecEEEECccH-H
Q 013574 337 SEYRFDISKL-EPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASVRAIS--IITFFRQPIE-S 412 (440)
Q Consensus 337 ~~i~iDLs~L-eP~VA~P~sPdnv~~v~e~~g~kId~v~IGSCTngr~eDL~~AA~vL~~~G~kv~--Vr~~V~PaS~-V 412 (440)
++++||||+| ||+||+|++|||+++++|+++++||+||||||| ||+|||++||+||| |++++ ||++|+|+|+ |
T Consensus 657 ~vieIDLs~i~eP~VA~P~~Pdnv~~lsev~g~~Id~vfIGSCT-gr~~DlraAA~ILk--g~~v~~~vr~~V~P~S~~v 733 (835)
T PRK09238 657 AVIEIDLAEIKEPILACPNDPDDVRLLSEVAGTKIDEVFIGSCM-TNIGHFRAAGKLLE--GKKGQLPTRLWVAPPTKMD 733 (835)
T ss_pred EEEEEEhhhcCCCeecCCCChhhheEHHHhcCCccCeEEEEcCC-CCHHHHHHHHHHHc--CCccCCCCCEEEECCCHHH
Confidence 9999999999 999999999999999999999999999999999 99999999999999 77765 9999999999 9
Q ss_pred HHHHhhccccc
Q 013574 413 YKNLLHPSLNE 423 (440)
Q Consensus 413 ~~~~l~~G~~~ 423 (440)
+++++++|+++
T Consensus 734 ~~~l~~eG~~~ 744 (835)
T PRK09238 734 ADQLTEEGYYS 744 (835)
T ss_pred HHHHHHcCcHH
Confidence 99999999976
No 20
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases.
Probab=100.00 E-value=7.9e-96 Score=741.23 Aligned_cols=284 Identities=27% Similarity=0.469 Sum_probs=272.8
Q ss_pred EEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCCHHHHHHHHHHHHHHHHcCcceeeecccCCCcccCCCC
Q 013574 98 LMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDY 177 (440)
Q Consensus 98 v~~hD~tgp~~~~~~~~e~G~~~~v~dp~kvv~~~DH~vp~~~~~~~~~~~~lr~fak~~gi~~f~d~~~~~~~~~~ppg 177 (440)
+|+||.|+|++++ |. ++| ..+||||+|+++++||++|+.+.+.+++++++|+|||++||+ ||+. +
T Consensus 2 ~~~hd~t~p~~~~-~~-~~g-~~~v~~p~~~~~~~DH~vp~~~~~~~~~~~~lr~~ak~~gi~-~~~~-----------g 66 (363)
T cd01582 2 CMTHDNSWPVALK-FM-SIG-ATKIHNPDQIVMTLDHDVQNKSEKNLKKYKNIESFAKKHGID-FYPA-----------G 66 (363)
T ss_pred eeEEeCcHHHHHH-HH-HcC-CCccCCCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhCCe-EECC-----------C
Confidence 6899999999999 64 477 489999999999999999999999999999999999999995 6754 5
Q ss_pred CeeeeeeecccceecCCceEEecCCCCccCCcccceeccCCchhhhhhhccceEEeecCCceeEEEEeeCCCCccHhHHH
Q 013574 178 KGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLI 257 (440)
Q Consensus 178 ~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GAlGala~GvG~td~a~~l~tG~~wlkvPetv~V~L~G~L~~gV~aKDvi 257 (440)
+|||||+++|+|+++||++|+|+||||||+||||+||||||+||++.+|+||++|++|||+|+|+|+|+|++||++||||
T Consensus 67 ~GI~Hqv~~E~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~~~tG~~w~~vPe~i~v~l~G~l~~gV~aKDvi 146 (363)
T cd01582 67 RGIGHQIMIEEGYAFPGTLAVASDSHSNMYGGVGCLGTPIVRTDAAAIWATGQTWWQIPPVAKVELKGQLPKGVTGKDVI 146 (363)
T ss_pred CCEEEEeccccCccCCCeEEEecCCCccccccchheEeccCHHHHHHHHHhCCeeecCCCEEEEEEecccCCCCCHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccCceEEEEecCcccCCChhhhhhhhhhccccCceeeeccCchhHHHHhhhcCCCCCccccCCCCCcccE
Q 013574 258 LQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLS 337 (440)
Q Consensus 258 L~li~~l~~~G~~gk~vEF~G~gv~~LS~deR~Tl~NM~~E~GAk~gif~pD~~t~~yL~~~~~~~~~~l~~D~dA~Y~~ 337 (440)
|+|+++|+.+|++|+++||+|+++++||+++|||||||++|+||++|+|||| ++
T Consensus 147 L~li~~l~~~g~~~~~vEf~G~~i~~Ls~~~R~Ti~NMa~E~GA~~~i~~~D--------------------------~~ 200 (363)
T cd01582 147 VALCGLFNKDQVLNHAIEFTGSGLNSLSVDTRLTIANMTTEWGALSGLFPTD--------------------------AK 200 (363)
T ss_pred HHHHHHhCcCCceeEEEEEECCccccCCHHHHhhHHhcccccCcceeEeccC--------------------------ce
Confidence 9999999999999999999999999999999999999999999999999999 67
Q ss_pred EEEEeCCCcceeeecCCCCCCccccccc--ccceeceEEEecCCCCChHHHHHHHHHHHhcCCc-------ce--ecEEE
Q 013574 338 EYRFDISKLEPLVAKPHSPDNRALAREC--KDVKIDRVYIGSCTGGKTEDFLAAAKVFLASVRA-------IS--IITFF 406 (440)
Q Consensus 338 ~i~iDLs~LeP~VA~P~sPdnv~~v~e~--~g~kId~v~IGSCTngr~eDL~~AA~vL~~~G~k-------v~--Vr~~V 406 (440)
+++||||+|||+||+|++|||+.|++|+ ++++|||||||||||||+|||++||+||| ||| |+ ||++|
T Consensus 201 ~~~iDls~leP~va~P~~p~~~~~~~~~~~~~~~id~~~IGSCTngr~~Dl~~aA~il~--gk~~~~~~~~v~~~Vr~~v 278 (363)
T cd01582 201 HLILDLSTLSPYVSGPNSVKVSTPLKELEAQNIKINKAYLVSCTNSRASDIAAAADVVK--GKKEKNGKIPVAPGVEFYV 278 (363)
T ss_pred EEEEEcccceeeeeCCCCCCCcCCHHHhhhcCceEeEEEEEcCCCCChHHHHHHHHHHh--CccccccCcccCCCceEEE
Confidence 9999999999999999999999999999 58999999999999999999999999999 777 76 99999
Q ss_pred ECccH-HHHHHhhcccccc
Q 013574 407 RQPIE-SYKNLLHPSLNEM 424 (440)
Q Consensus 407 ~PaS~-V~~~~l~~G~~~~ 424 (440)
+|+|+ ||++++++|+.+.
T Consensus 279 ~PgS~~V~~~a~~~Gl~~~ 297 (363)
T cd01582 279 AAASSEVQAAAEKNGDWQT 297 (363)
T ss_pred eCCCHHHHHHHHHcCcHHH
Confidence 99999 9999999999864
No 21
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=100.00 E-value=1.2e-94 Score=784.28 Aligned_cols=338 Identities=22% Similarity=0.299 Sum_probs=312.3
Q ss_pred CCCCCCCCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCC
Q 013574 61 TTGSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSD 140 (440)
Q Consensus 61 ~~~~~~~~mTl~EKIla~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~G~~~~v~dp~kvv~~~DH~vp~~~ 140 (440)
.+...+|||||+||||++|+|+..|+||++|++++|.+++||.|||++++.|++ +| .++|||+++++++||++|.++
T Consensus 364 ~~~~~~mg~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~~~~~-l~--~~vfdpd~v~~~~DH~~p~~~ 440 (844)
T TIGR00117 364 APAESDKGFTLAQKMVGRACGVKGIRPGTYCEPKMTTVGSQDTTGPMTRDELKE-LA--CLGFSADLVLQSFCHTAAYPK 440 (844)
T ss_pred CCCcCCCchhHHHHHHHHhhCCCCCCCCCEEEEECcEEeeeccccHHHHHHHHH-hC--CceECCCcEEEEeCCCCCCCC
Confidence 333335899999999999999988999999999999999999999999999965 76 389999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCcceeeecccCCCcccCCCCCeeeeeeecccceecCCceEEecCCCCccCCcccceeccCCch
Q 013574 141 ERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNT 220 (440)
Q Consensus 141 ~~~~~~~~~lr~fak~~gi~~f~d~~~~~~~~~~ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GAlGala~GvG~t 220 (440)
...+++|+.+|+|++++|+. ||+. |+|||||+|+| +++||++++|+||||||+ +| ||+|+|++
T Consensus 441 ~~~a~~~~~lr~Fa~~~Gi~-~~~p-----------G~GI~Hqvl~e--~~~PG~vivG~DSHT~t~--~G-~a~G~Gs~ 503 (844)
T TIGR00117 441 PVDVNTHHTLPDFIMNRGGV-ALRP-----------GDGVIHSWLNR--MLLPDTVGTGGDSHTRFP--LG-ISFPAGSG 503 (844)
T ss_pred HHHHHHHHHHHHHHHHcCCe-EECC-----------CCceecccchh--hccCCeeEEecccccccc--ce-EEecccHH
Confidence 99999999999999999996 6654 57999999876 799999999999999997 57 99999999
Q ss_pred hhhhhhccceEEeecCCceeEEEEeeCCCCccHhHHHHHH----H--HHhcc------cccCceEEEEecCcccCCChhh
Q 013574 221 DAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQI----I--GEISV------AGATYKSMEFVGTTVERLSMEE 288 (440)
Q Consensus 221 d~a~~l~tG~~wlkvPetv~V~L~G~L~~gV~aKDviL~l----i--~~l~~------~G~~gk~vEF~G~gv~~LS~de 288 (440)
|++++|+||++||+|||+|+|+|+|+|++||++|||||+| | +.+++ +|++|+++||. |+++||+++
T Consensus 504 dvA~a~atG~~~l~vPesV~V~l~G~L~~gVtaKDliL~I~~~~i~~G~ltv~k~g~~ng~~gk~lEf~--Gi~~Lsve~ 581 (844)
T TIGR00117 504 LVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVNAIPLYAIKQGLLTVEKKGKKNVFNGRILEIE--GLPDLKVEQ 581 (844)
T ss_pred HHHHHHHhCeeeEeCCCEEEEEEeccCCCCcChhhHHHHHHHHHHhcCeeecccccccccccceEEEEC--CcccCCHhH
Confidence 9999999999999999999999999999999999999999 5 55655 67899999996 599999999
Q ss_pred hhhhhhhccccCceeeeccCchh-HHHHhhhc----------CCC-----------------CCccccCCCCCcccEEEE
Q 013574 289 RMTLCNMVVEAGGKNGVVPADGT-TFKYLEDK----------TSL-----------------PYEPVYSDEKASFLSEYR 340 (440)
Q Consensus 289 R~Tl~NM~~E~GAk~gif~pD~~-t~~yL~~~----------~~~-----------------~~~~l~~D~dA~Y~~~i~ 340 (440)
|||||||++|+||++|+|++|++ |++||+.+ ++. .++.+++|+||.|+++++
T Consensus 582 R~Ti~NMaaE~GA~~gii~~D~e~t~eYLk~~~~~~~~mi~~G~~~~~~~~~~~~~~e~w~~~~~ll~aD~dA~Y~~vie 661 (844)
T TIGR00117 582 AFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEADADAEYAAVIE 661 (844)
T ss_pred HHHHhhhhhhhCceEEEeccChHHHHHHHHhCccccccccccCCcchhhhhHHHHHHHHHHhhcccccCCCCCceEEEEE
Confidence 99999999999999999999965 89999985 321 234578999999999999
Q ss_pred EeCCCc-ceeeecCCCCCCcccccccccceeceEEEecCCCCChHHHHHHHHHHHhcCCcce-ecEEEECccH-HHHHHh
Q 013574 341 FDISKL-EPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASVRAIS-IITFFRQPIE-SYKNLL 417 (440)
Q Consensus 341 iDLs~L-eP~VA~P~sPdnv~~v~e~~g~kId~v~IGSCTngr~eDL~~AA~vL~~~G~kv~-Vr~~V~PaS~-V~~~~l 417 (440)
||||+| ||+||+|++|||++|++|+++++||+||||||| +|++||++||+||| |+++. ||++|+|+|+ |+++++
T Consensus 662 IDLs~i~EP~VA~P~~PDnv~pvsev~g~~IdqVfIGSCT-~n~~DlraAA~ILk--g~~v~~vrl~V~P~S~~V~~~l~ 738 (844)
T TIGR00117 662 IDLAEIKEPILAAPNDPDDVRPLSEVQGDKIDEVFIGSCM-TNIGHFRAAGKILD--AAGQLPTRLWVAPPTRMDEQQLT 738 (844)
T ss_pred EEhHhCCCCeeCCCCChhhccChHhhcCcccceEEEEcCC-CCHHHHHHHHHHHc--CCCcCCCCEEEECCCHHHHHHHH
Confidence 999999 999999999999999999999999999999999 89999999999999 77776 9999999999 999999
Q ss_pred hccccc
Q 013574 418 HPSLNE 423 (440)
Q Consensus 418 ~~G~~~ 423 (440)
++|+++
T Consensus 739 ~eG~~~ 744 (844)
T TIGR00117 739 EEGYYS 744 (844)
T ss_pred HcCcHH
Confidence 999976
No 22
>PLN00094 aconitate hydratase 2; Provisional
Probab=100.00 E-value=1.3e-92 Score=767.67 Aligned_cols=342 Identities=22% Similarity=0.274 Sum_probs=309.2
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHhcCC-CCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCC
Q 013574 57 RRPATTGSVKNAMTLTEKIFSRASEK-PQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHY 135 (440)
Q Consensus 57 r~~~~~~~~~~~mTl~EKIla~~~~~-~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~G~~~~v~dp~kvv~~~DH~ 135 (440)
+.|..+...+|||||+||||++|+|+ ..|+||++|++++|.+++||.|||++++.|+ ++|. .+|||+++++++||+
T Consensus 432 ~~p~~~~~~~mG~TlaEKIl~~a~G~~~~V~pGe~v~~~vD~v~sqD~TGPmt~~efk-el~~--~~~dpdkv~~~fDH~ 508 (938)
T PLN00094 432 RMPSVPESKPKGFTLAQKMVGKACGVDEGILPGTYCEPRMTTVGSQDTTGPMTRDELK-DLAC--LGFSADLVMQSFCHT 508 (938)
T ss_pred cCCCCCCcCCCchhHHHHHHHHHhCCCCCCCCCCEEEEECcEEeeeccccHHHHHHHH-Hhcc--cccCcccEEEEccCC
Confidence 44444444578999999999999998 4699999999999999999999999999996 4763 588999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCcceeeecccCCCcccCCCCCeeeeeeecccceecCCceEEecCCCCccCCcccceec
Q 013574 136 IFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFAT 215 (440)
Q Consensus 136 vp~~~~~~~~~~~~lr~fak~~gi~~f~d~~~~~~~~~~ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GAlGala~ 215 (440)
+|.++....++|+.+|+|++++|+. ||+. |+|||||+|+| +++||++++|+|||||+.+++ +|
T Consensus 509 ap~p~~~~~~~~~~lr~Fa~~~Gi~-~~~~-----------G~GI~HqvL~e--~~lPG~vivGgDSHT~fa~GI---sf 571 (938)
T PLN00094 509 AAYPKPVDVVTHHTLPDFIRNRGGV-SLRP-----------GDGVIHSWLNR--MLLPDTVGTGGDSHTRFPIGI---SF 571 (938)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCE-EECC-----------CCceecccccc--cccCCeEEEeecCCCCCcccc---cC
Confidence 9999999999999999999999996 7764 57999999865 999999999999999977764 56
Q ss_pred cCCchhhhhhhccceEEeecCCceeEEEEeeCCCCccHhHHHHHHH------HHhccc------ccCceEEEEecCcccC
Q 013574 216 GIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQII------GEISVA------GATYKSMEFVGTTVER 283 (440)
Q Consensus 216 GvG~td~a~~l~tG~~wlkvPetv~V~L~G~L~~gV~aKDviL~li------~~l~~~------G~~gk~vEF~G~gv~~ 283 (440)
|.|++|+|++|+||++||+|||+|+|+|+|+|++||++|||||+|+ |+|+++ +++|+++|| +|+++
T Consensus 572 ~aGsgdvA~a~ATG~~wlkvPEsV~V~l~G~L~~gVtaKDlIL~Ii~~~i~~G~Ltv~k~gk~~~f~GkilEf--~Gl~~ 649 (938)
T PLN00094 572 PAGSGLVAFGAATGVIPLDMPESVLVRFTGTMQPGITLRDLVHAIPYTAIQDGLLTVEKKGKKNVFSGRILEI--EGLPH 649 (938)
T ss_pred CCcHHHHHHHHHhCeehhcCCCEEEEEEecccCCCcCHhHHHHHHHHHhhhccccchhhcCccceEeeEEEEe--CCccc
Confidence 8899999999999999999999999999999999999999999996 665553 457888888 66999
Q ss_pred CChhhhhhhhhhccccCceeeeccCch-hHHHHhhh----------cCC-----------------CCCccccCCCCCcc
Q 013574 284 LSMEERMTLCNMVVEAGGKNGVVPADG-TTFKYLED----------KTS-----------------LPYEPVYSDEKASF 335 (440)
Q Consensus 284 LS~deR~Tl~NM~~E~GAk~gif~pD~-~t~~yL~~----------~~~-----------------~~~~~l~~D~dA~Y 335 (440)
||+++|||||||++|+||++|+|++|+ +|++||+. ++. +.++++.+|+||+|
T Consensus 650 Lsve~R~TL~NMaaE~GAk~gii~~Dde~t~eYL~~n~~~~~~mi~~g~~~~rt~~~ri~~~e~w~~~~~ll~aD~dA~Y 729 (938)
T PLN00094 650 LKCEQAFELSDASAERSAAGCTIKLDKEPIIEYLNSNVVMLKWMIAEGYGDRRTLERRIARMQQWLADPELLEADPDAEY 729 (938)
T ss_pred CCHhHHHHHHhHHHHhCccEEEECCChhHHHHHHhhcccchhhhhccCCCchhhHHHHHHHHHHHHhhcccccCCCCCce
Confidence 999999999999999999999999995 78999986 221 12356889999999
Q ss_pred cEEEEEeCCCc-ceeeecCCCCCCcccccccccceeceEEEecCCCCChHHHHHHHHHHHhcCCcce--ecEEEECccH-
Q 013574 336 LSEYRFDISKL-EPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASVRAIS--IITFFRQPIE- 411 (440)
Q Consensus 336 ~~~i~iDLs~L-eP~VA~P~sPdnv~~v~e~~g~kId~v~IGSCTngr~eDL~~AA~vL~~~G~kv~--Vr~~V~PaS~- 411 (440)
+++|+||||+| ||+||+|++|||+++++|++|++|||||||||| ||++||++||+||+ |+|++ ||++|+|+|+
T Consensus 730 ~~vieIDLs~I~EP~VA~P~~PDnv~~lsev~g~kIDqVFIGSCT-grieDlraAA~ILk--Grkv~~~Vrl~V~P~Sr~ 806 (938)
T PLN00094 730 AAVIEIDMDEIKEPILCAPNDPDDARLLSEVTGDKIDEVFIGSCM-TNIGHFRAAGKLLN--DNLSQLPTRLWVAPPTKM 806 (938)
T ss_pred EEEEEEEhHHCCCCeEeCCCChhhceECchhcCCccCeEEEEeCC-CCHHHHHHHHHHHc--CCCCCCCCcEEEeCCCHH
Confidence 99999999999 999999999999999999999999999999999 79999999999999 77775 9999999999
Q ss_pred HHHHHhhccccc
Q 013574 412 SYKNLLHPSLNE 423 (440)
Q Consensus 412 V~~~~l~~G~~~ 423 (440)
||++++++|+++
T Consensus 807 V~~ql~~eG~~~ 818 (938)
T PLN00094 807 DEAQLKAEGYYS 818 (938)
T ss_pred HHHHHHHcCcHH
Confidence 999999999975
No 23
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=100.00 E-value=3.6e-92 Score=724.18 Aligned_cols=311 Identities=32% Similarity=0.529 Sum_probs=298.3
Q ss_pred EEEecCCChHHHHHHHHHHhCCCC-cccCCccEEEEecCCCCCCCHHHHHHHHHHHHHHHHcCcceeeecccCCCcccCC
Q 013574 97 ILMTHDVCGPGSFGIFKKEFGENA-KVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANP 175 (440)
Q Consensus 97 ~v~~hD~tgp~~~~~~~~e~G~~~-~v~dp~kvv~~~DH~vp~~~~~~~~~~~~lr~fak~~gi~~f~d~~~~~~~~~~p 175 (440)
++|+||.|+|++++.|++ +|. . +||||+++++++||++|+.+.+++++++++|+|+|++||+ ||+.
T Consensus 1 ~v~~hD~tgp~a~~~~~~-~~~-~~~v~~p~~v~~~~DH~~p~~~~~~~~~~~~lr~f~~~~gi~-~~~~---------- 67 (389)
T cd01351 1 RVMLQDATGPMAMKAFEI-LAA-LGKVADPSQIACVHDHAVQLEKPVNNEGHKFLSFFAALQGIA-FYRP---------- 67 (389)
T ss_pred CEEEEecchHHHHHHHHH-cCC-CCCCCCcccEEEEECCCCCCCChhHHHHHHHHHHHHHHcCCc-EECC----------
Confidence 479999999999999964 774 5 8999999999999999999999999999999999999995 6654
Q ss_pred CCCeeeeeeecccceecCCceEEecCCCCccCCcccceeccCCchhhhhhhccceEEeecCCceeEEEEeeCCCCccHhH
Q 013574 176 DYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKD 255 (440)
Q Consensus 176 pg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GAlGala~GvG~td~a~~l~tG~~wlkvPetv~V~L~G~L~~gV~aKD 255 (440)
++|||||++.|+ +++||++++|+||||||+||||+||+|+|+||++++|+||++|+++||+++|+|+|+|++||++||
T Consensus 68 -g~Gi~H~~~~E~-~~~pG~~i~g~DSHT~t~Ga~ga~a~G~G~td~~~~~~tg~~~~~vP~~~~v~l~G~l~~~V~~kD 145 (389)
T cd01351 68 -GVGIIHQIMVEN-LALPGDLLVGSDSHTTSYGGLGAISTGAGGGDVAFVMAGGPAWLKKPEVVGVNLTGKLSPGVTGKD 145 (389)
T ss_pred -CCCeECcccccc-cCCCCCEEEEcCcCccccCcchheEEeeeHHHHHHHHhcCceeccCCcEEEEEEecccCCCceeeH
Confidence 589999999877 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccCceEEEEecCcccCCChhhhhhhhhhccccCceeeeccCchhHHHHhhhcCCC--------CCccc
Q 013574 256 LILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSL--------PYEPV 327 (440)
Q Consensus 256 viL~li~~l~~~G~~gk~vEF~G~gv~~LS~deR~Tl~NM~~E~GAk~gif~pD~~t~~yL~~~~~~--------~~~~l 327 (440)
++|+|++.++.+|++|+++||.|+++++||+|+|+|||||++|+||++|+||+|++|++||+.+++. .|+.+
T Consensus 146 l~l~ilg~lg~~g~~~~~~Ef~G~~~~~ls~d~r~tl~nm~~E~ga~~gi~p~D~~t~~yl~~~~~~~~~~~~~~~~~~l 225 (389)
T cd01351 146 VVLKLGGIVGVDGVLNRIVEFYGEGVSSLSIEDRLTICNMMAELGATTGIFPEDKTTLKWLEATGRPLLKNLWLAFPEEL 225 (389)
T ss_pred HHHHHHHHHhhcccCceEEEEECCccCCCCHHHHHHHHHHhHhhhheEeEeCCcHHHHHHHHhcCCchhhHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999887 57789
Q ss_pred cCCCCCcccEEEEEeCCCcceeeecCCCCCCcccccccccceeceEEEecCCCCChHHHHHHHHHHHhcCCcce--ecEE
Q 013574 328 YSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASVRAIS--IITF 405 (440)
Q Consensus 328 ~~D~dA~Y~~~i~iDLs~LeP~VA~P~sPdnv~~v~e~~g~kId~v~IGSCTngr~eDL~~AA~vL~~~G~kv~--Vr~~ 405 (440)
.+|+||.|+++++||||+|||+|++|++|||+.|++|+++.+||+||||||||+|+|||++||+||| ||||+ ||++
T Consensus 226 ~~d~~a~y~~~i~iDls~lep~va~p~~p~~~~~v~~~~~~~Id~v~IGSCtn~~~~dl~~aA~ilk--gk~v~~~v~~~ 303 (389)
T cd01351 226 LADEGAEYDQVIEIDLSELEPDISGPNRPDDAVSVSEVEGTKIDQVLIGSCTNNRYSDMLAAAKLLK--GAKVAPGVRLI 303 (389)
T ss_pred CCCCCCCeeEEEEEEhhhceeEEecCCChhhccChhhccCCceeEEEEecCCCCCHHHHHHHHHHHc--CCcCCCCceEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 88987 9999
Q ss_pred EECccH-HHHHHhhcccccc
Q 013574 406 FRQPIE-SYKNLLHPSLNEM 424 (440)
Q Consensus 406 V~PaS~-V~~~~l~~G~~~~ 424 (440)
|+|+|+ ||++++++||.+-
T Consensus 304 v~P~S~~v~~~a~~~Gl~~~ 323 (389)
T cd01351 304 VTPGSRMVYATLSREGYYEI 323 (389)
T ss_pred EECCCHHHHHHHHHcChHHH
Confidence 999999 9999999999763
No 24
>PRK09277 aconitate hydratase; Validated
Probab=100.00 E-value=2.5e-88 Score=741.22 Aligned_cols=338 Identities=22% Similarity=0.315 Sum_probs=298.9
Q ss_pred CCCCCeEEEeeeEEEecCCChHHHHHHHHH------HhCCCCcccCCc-cEEEEecCCCCCCC-----HHHHHHHHHHHH
Q 013574 85 LSPGDNVWVNVDILMTHDVCGPGSFGIFKK------EFGENAKVWDRE-KIVIIPDHYIFTSD-----ERANRNVDILRD 152 (440)
Q Consensus 85 v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~------e~G~~~~v~dp~-kvv~~~DH~vp~~~-----~~~~~~~~~lr~ 152 (440)
-.+|..|.++||++++||+||.+++-.|.. ++|.+++..+|. .+.+++||+++... ....+..+++++
T Consensus 74 ~~~~~ei~f~p~rvl~QD~TGvpa~vdlaamr~a~~~~G~dp~~i~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~r 153 (888)
T PRK09277 74 AKPDREIPFRPARVVMQDFTGVPAVVDLAAMRDAIADLGGDPAKINPLVPVDLVIDHSVQVDYFGTPDAFEKNVELEFER 153 (888)
T ss_pred CCCCceeeeccceeeecccccchHHHHHHHHHHHHHHcCCChhhcCCCCCeEEEeCCCCcCCCCCCcCHHHHHHHHHHHh
Confidence 467899999999999999999777666633 247777788999 69999999998763 222232344444
Q ss_pred HHHHcCcceeeecccCCCcccCCCCCeeeeeeecc----------cc--eecCCceEEecCCCCccCCcccceeccCCch
Q 013574 153 FCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQ----------EG--HCRPGEVLLGTDSHTCTAGAFGQFATGIGNT 220 (440)
Q Consensus 153 fak~~gi~~f~d~~~~~~~~~~ppg~GI~Hqvl~e----------eg--~~~PG~~ivGtDSHT~t~GAlGala~GvG~t 220 (440)
-+++|++-. |....+.||++.|||+|||||++.| .| ++.| +++|||||||||+||||+||||||++
T Consensus 154 N~er~~fLk-w~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~G~~~~~P-dtlVGtDSHT~t~GalG~la~GVGg~ 231 (888)
T PRK09277 154 NEERYQFLK-WGQKAFDNFRVVPPGTGICHQVNLEYLAPVVWTREDGELVAYP-DTLVGTDSHTTMINGLGVLGWGVGGI 231 (888)
T ss_pred CHHHHhHHH-HHHHHhcCCCCCCCCCCccceechhhcccceeecCCCceeecc-ceEEecCCCCCCCCcccccEEccCHH
Confidence 445544311 5555677899999999999999999 77 8999 59999999999999999999999999
Q ss_pred hhhhhhccceEEeecCCceeEEEEeeCCCCccHhHHHHHHHHHhcccccCceEEEEecCcccCCChhhhhhhhhhccccC
Q 013574 221 DAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAG 300 (440)
Q Consensus 221 d~a~~l~tG~~wlkvPetv~V~L~G~L~~gV~aKDviL~li~~l~~~G~~gk~vEF~G~gv~~LS~deR~Tl~NM~~E~G 300 (440)
|++++|+||++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++|++|||+|+|+++||+++|||||||++|+|
T Consensus 232 Eaeaam~g~~~~~~vPevvgV~LtG~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~G 311 (888)
T PRK09277 232 EAEAAMLGQPSSMLIPEVVGVKLTGKLPEGVTATDLVLTVTEMLRKKGVVGKFVEFFGEGLASLSLADRATIANMAPEYG 311 (888)
T ss_pred HHHHHHhcCcEEeeCCCEEEEEEEeecCCCccHhHHHHHHHHHhcccCcccEEEEEECcccccCCHHHHHHHhccchhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeccCchhHHHHhhhcCCCC--------Cc----ccc-CCCCCcccEEEEEeCCCcceeeecCCCCCCccccccccc
Q 013574 301 GKNGVVPADGTTFKYLEDKTSLP--------YE----PVY-SDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKD 367 (440)
Q Consensus 301 Ak~gif~pD~~t~~yL~~~~~~~--------~~----~l~-~D~dA~Y~~~i~iDLs~LeP~VA~P~sPdnv~~v~e~~g 367 (440)
|++|+||+|++|++||+.+++.+ |. .++ +|++|.|+++++||||+|||+||+|++|+|+.|++|+.+
T Consensus 312 At~g~fp~De~T~~YL~~tgr~~~~v~~~e~y~ka~~~~~~~D~~a~Y~~vieiDLs~leP~VAgP~~P~~~v~v~e~~~ 391 (888)
T PRK09277 312 ATCGFFPIDEETLDYLRLTGRDEEQVALVEAYAKAQGLWRDPLEEPVYTDVLELDLSTVEPSLAGPKRPQDRIPLSDVKE 391 (888)
T ss_pred ceEEEecCChhHHHHHHhcCCChHHHHHHHHHHHHHhhhccCCCCCCEEEEEEEEccceeEecCCCCCcccCcChhhcCc
Confidence 99999999999999999988754 31 233 599999999999999999999999999999999999877
Q ss_pred c----------------------------eeceEEEecCCCCChHHHHHHHHHHHh----cCCcce--ecEEEECccH-H
Q 013574 368 V----------------------------KIDRVYIGSCTGGKTEDFLAAAKVFLA----SVRAIS--IITFFRQPIE-S 412 (440)
Q Consensus 368 ~----------------------------kId~v~IGSCTngr~eDL~~AA~vL~~----~G~kv~--Vr~~V~PaS~-V 412 (440)
. +|++||||||||||+||+++||++|++ +|+||+ |+++|+|||+ |
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~AA~lLakkA~~kG~kv~p~Vk~~v~PGS~~V 471 (888)
T PRK09277 392 AFAKSAELGVQGFGLDEAEEGEDYELPDGAVVIAAITSCTNTSNPSVMIAAGLLAKKAVEKGLKVKPWVKTSLAPGSKVV 471 (888)
T ss_pred chhhhchhhhhhhhhhhhhcCCCccccCCceEEEEEeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCeeEEEeCCCHHH
Confidence 5 678999999999999999999999953 699998 9999999999 9
Q ss_pred HHHHhhcccccc
Q 013574 413 YKNLLHPSLNEM 424 (440)
Q Consensus 413 ~~~~l~~G~~~~ 424 (440)
+++|+++|+++-
T Consensus 472 ~~~l~~~Gl~~~ 483 (888)
T PRK09277 472 TDYLEKAGLLPY 483 (888)
T ss_pred HHHHHHCChHHH
Confidence 999999999864
No 25
>PRK12881 acnA aconitate hydratase; Provisional
Probab=100.00 E-value=1e-87 Score=737.42 Aligned_cols=338 Identities=21% Similarity=0.287 Sum_probs=295.6
Q ss_pred CCCCCeEEEeeeEEEecCCChHHHHHHHH------HHhCCCCcccCCc-cEEEEecCCCCCCC-----HHHHHHHHHHHH
Q 013574 85 LSPGDNVWVNVDILMTHDVCGPGSFGIFK------KEFGENAKVWDRE-KIVIIPDHYIFTSD-----ERANRNVDILRD 152 (440)
Q Consensus 85 v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~------~e~G~~~~v~dp~-kvv~~~DH~vp~~~-----~~~~~~~~~lr~ 152 (440)
...+..|.++||++++||+||++++..|. ++.|.+.+..+|. .+.+++||+++... ....+..+++++
T Consensus 73 ~~~~~ei~~~pdRvllqD~Tg~~a~~dlaamr~a~~~~G~d~~~~~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~r 152 (889)
T PRK12881 73 RKSDDEIPFVPARVVMQDFTGVPALVDLAAMRDAAAEAGGDPAKINPLVPVDLVVDHSVAVDYFGQKDALDLNMKIEFQR 152 (889)
T ss_pred CCCCceeccccceeeeecccCccHHHHHHHHHHHHHHcCCChhhcCCCCCcceEeCCCCccCCCCCCCHHHHHHHHHHHh
Confidence 34578899999999999999998887772 2357544444555 46699999997753 222233444555
Q ss_pred HHHHcCcceeeecccCCCcccCCCCCeeeeeeeccc-------------ceecCCceEEecCCCCccCCcccceeccCCc
Q 013574 153 FCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQE-------------GHCRPGEVLLGTDSHTCTAGAFGQFATGIGN 219 (440)
Q Consensus 153 fak~~gi~~f~d~~~~~~~~~~ppg~GI~Hqvl~ee-------------g~~~PG~~ivGtDSHT~t~GAlGala~GvG~ 219 (440)
.+++|++=+ |-...+.||+++|||+|||||++.|. |+++| +++|||||||||+||||+||||||+
T Consensus 153 N~ery~fLk-w~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~~~~g~~~P-dtlVGtDSHT~~~galG~lg~GVGg 230 (889)
T PRK12881 153 NAERYQFLK-WGMQAFDNFRVVPPGTGIMHQVNLEYLARVVHTKEDDGDTVAYP-DTLVGTDSHTTMINGIGVLGWGVGG 230 (889)
T ss_pred hHHHhChHH-HHHHHccCCCCCCCCCCccceEchhhhcccceecccCCcceecC-CeEEecCCCCCCCccccceEecccH
Confidence 555555311 56666789999999999999999995 89999 5999999999999999999999999
Q ss_pred hhhhhhhccceEEeecCCceeEEEEeeCCCCccHhHHHHHHHHHhcccccCceEEEEecCcccCCChhhhhhhhhhcccc
Q 013574 220 TDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEA 299 (440)
Q Consensus 220 td~a~~l~tG~~wlkvPetv~V~L~G~L~~gV~aKDviL~li~~l~~~G~~gk~vEF~G~gv~~LS~deR~Tl~NM~~E~ 299 (440)
+|++++|+||++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++|++|||+|+|+++||+++|||||||++|+
T Consensus 231 ~Eaeaamlgq~~~~~vPevigV~l~G~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~ 310 (889)
T PRK12881 231 IEAEAVMLGQPVYMLIPDVVGVELTGKLREGVTATDLVLTVTEMLRKEGVVGKFVEFFGEGVASLTLGDRATIANMAPEY 310 (889)
T ss_pred HHHHHHHhCCcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccccceEEEEEECccccccCHHHHHHHhcccHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeccCchhHHHHhhhcCCCCC--------c----c-ccCCCCCcccEEEEEeCCCcceeeecCCCCCCcccccccc
Q 013574 300 GGKNGVVPADGTTFKYLEDKTSLPY--------E----P-VYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECK 366 (440)
Q Consensus 300 GAk~gif~pD~~t~~yL~~~~~~~~--------~----~-l~~D~dA~Y~~~i~iDLs~LeP~VA~P~sPdnv~~v~e~~ 366 (440)
||++|+||+|++|++||+.+++.+. . . ..+|++|.|+++++||||+|||+||+|++|+|+.|++++.
T Consensus 311 GAt~g~fp~De~T~~YL~~tgr~~~~v~l~e~y~ka~~l~~~~d~~a~Y~~vieiDLs~veP~vAgP~~P~~~v~l~e~~ 390 (889)
T PRK12881 311 GATMGFFPVDEQTLDYLRLTGRTEAQIALVEAYAKAQGLWGDPKAEPRYTRTLELDLSTVAPSLAGPKRPQDRIALGNVK 390 (889)
T ss_pred CceEEEecCChhHHHHHHhcccchHHHHHHHHHHHHHHhhcCcCCCCceeEEEEEEccceeEeccCCCChhhCcCchhcC
Confidence 9999999999999999999877542 1 1 2379999999999999999999999999999999999887
Q ss_pred --------------------------cc---eeceEEEecCCCCChHHHHHHHHHHHh----cCCcce--ecEEEECccH
Q 013574 367 --------------------------DV---KIDRVYIGSCTGGKTEDFLAAAKVFLA----SVRAIS--IITFFRQPIE 411 (440)
Q Consensus 367 --------------------------g~---kId~v~IGSCTngr~eDL~~AA~vL~~----~G~kv~--Vr~~V~PaS~ 411 (440)
++ +||+||||||||+|+|||++||++|++ +|+||+ |+++|+|||+
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~V~~a~IgSCTNts~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS~ 470 (889)
T PRK12881 391 SAFSDLFSKPVAENGFAKKAQTSNGVDLPDGAVAIAAITSCTNTSNPSVLIAAGLLAKKAVERGLTVKPWVKTSLAPGSK 470 (889)
T ss_pred cCHHHHhhhHHHhhhhhcccccCCCccccCccEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhCCCccCCCccEEEeCCCH
Confidence 22 799999999999999999999999942 599998 9999999999
Q ss_pred -HHHHHhhcccccc
Q 013574 412 -SYKNLLHPSLNEM 424 (440)
Q Consensus 412 -V~~~~l~~G~~~~ 424 (440)
|++++.++||++-
T Consensus 471 ~V~~~l~~~Gl~~~ 484 (889)
T PRK12881 471 VVTEYLERAGLLPY 484 (889)
T ss_pred HHHHHHHHcCcHHH
Confidence 9999999999864
No 26
>PTZ00092 aconitate hydratase-like protein; Provisional
Probab=100.00 E-value=2e-87 Score=734.66 Aligned_cols=356 Identities=22% Similarity=0.276 Sum_probs=306.7
Q ss_pred CCCcHHHH-HHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHH------HHHhCCCCcccCCc-cEEEEecCCCCC
Q 013574 67 NAMTLTEK-IFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIF------KKEFGENAKVWDRE-KIVIIPDHYIFT 138 (440)
Q Consensus 67 ~~mTl~EK-Ila~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~------~~e~G~~~~v~dp~-kvv~~~DH~vp~ 138 (440)
.|..+.|+ |-+-..+.+...+|..|.++||+|++||+||.+++-.| .+++|.++...+|. .+.+++||+++.
T Consensus 61 d~~~~~~~~~~~~~~w~~~~~~~~ei~~~p~Rvl~QD~Tgvpa~vdlaamR~~~~~~g~d~~~inp~vpvdlviDHsvq~ 140 (898)
T PTZ00092 61 DEFDVTSKDVENILNWEENSKKQIEIPFKPARVLLQDFTGVPAVVDLAAMRDAMKRLGGDPAKINPLVPVDLVIDHSVQV 140 (898)
T ss_pred CCcCCCHHHHHHHHcCcccCCCCceeeeccceEEeecccCchHHHHHHHHHHHHHHcCCChhhcCCCCCcceecCCCCCC
Confidence 35555533 22222333445678999999999999999995544433 22367766677888 888999999987
Q ss_pred CC-----HHHHHHHHHHHHHHHHcCcceeeecccCCCcccCCCCCeeeeeeecc---------cceecCCceEEecCCCC
Q 013574 139 SD-----ERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQ---------EGHCRPGEVLLGTDSHT 204 (440)
Q Consensus 139 ~~-----~~~~~~~~~lr~fak~~gi~~f~d~~~~~~~~~~ppg~GI~Hqvl~e---------eg~~~PG~~ivGtDSHT 204 (440)
.. ....+...++++-+++|++- .|..+.+.||+++|||+|||||++.| +|++.|| ++|||||||
T Consensus 141 d~~~~~da~~~n~~~e~~rN~ery~fl-~~~~~~f~~~~v~pPg~GI~HQV~lE~la~vv~~e~G~~~Pd-~lvGtDSHT 218 (898)
T PTZ00092 141 DFSRSPDALELNQEIEFERNLERFEFL-KWGSKAFKNLLIVPPGSGIVHQVNLEYLARVVFNKDGLLYPD-SVVGTDSHT 218 (898)
T ss_pred CCCCCcCHHHHHHHHHHHhhHHHhChH-HhhhhhhcCCcccCCCCceeceechhhhccccccccCcccCC-eEEecCCCC
Confidence 53 22233345566677777764 37888889999999999999999877 7899995 599999999
Q ss_pred ccCCcccceeccCCchhhhhhhccceEEeecCCceeEEEEeeCCCCccHhHHHHHHHHHhcccccCceEEEEecCcccCC
Q 013574 205 CTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERL 284 (440)
Q Consensus 205 ~t~GAlGala~GvG~td~a~~l~tG~~wlkvPetv~V~L~G~L~~gV~aKDviL~li~~l~~~G~~gk~vEF~G~gv~~L 284 (440)
||+||||+||||||++|++++|++|++||++||+|+|+|+|+|++||++|||||+|+++|+.+|++|++|||+|+|+++|
T Consensus 219 ~~~GalG~la~GVGg~Eaeaamlgq~~~~~vPevvgV~LtG~L~~gVtakDliL~i~~~L~~~G~vgk~vEF~G~gv~~L 298 (898)
T PTZ00092 219 TMINGLGVLGWGVGGIEAEAVMLGQPISMVLPEVVGFKLTGKLSEHVTATDLVLTVTSMLRKRGVVGKFVEFYGPGVKTL 298 (898)
T ss_pred CCCCcccccEecccHHHHHHHHhcCcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccCccceEEEEEccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhhhccccCceeeeccCchhHHHHhhhcCCCCC------------cccc-CCCCCcccEEEEEeCCCcceeee
Q 013574 285 SMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPY------------EPVY-SDEKASFLSEYRFDISKLEPLVA 351 (440)
Q Consensus 285 S~deR~Tl~NM~~E~GAk~gif~pD~~t~~yL~~~~~~~~------------~~l~-~D~dA~Y~~~i~iDLs~LeP~VA 351 (440)
|+++|||||||++|+||++|+||+|++|++||+.+++.+. ..++ +|++|.|+++++||||+|||+||
T Consensus 299 Sv~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tgR~~~~~~lve~y~ka~~l~~~~D~da~Y~~vieiDLs~veP~VA 378 (898)
T PTZ00092 299 SLADRATIANMAPEYGATMGFFPIDEKTLDYLKQTGRSEEKVELIEKYLKANGLFRTYAEQIEYSDVLELDLSTVVPSVA 378 (898)
T ss_pred cHHHhhhhhccccccCceEEEecCChhHHHHHHhcccchHHHHHHHHHHHHHHHhhcCCCCCceeEEEEEEcccceEecc
Confidence 9999999999999999999999999999999999877532 1344 79999999999999999999999
Q ss_pred cCCCCCCccccccccc-------------------------ce--------------eceEEEecCCCCChHHHHHHHHH
Q 013574 352 KPHSPDNRALARECKD-------------------------VK--------------IDRVYIGSCTGGKTEDFLAAAKV 392 (440)
Q Consensus 352 ~P~sPdnv~~v~e~~g-------------------------~k--------------Id~v~IGSCTngr~eDL~~AA~v 392 (440)
+|++|+|+.|++|+.. ++ ||+||||||||||+||+++||++
T Consensus 379 gP~~P~~~v~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~l 458 (898)
T PTZ00092 379 GPKRPHDRVPLSDLKKDFTACLSAPVGFKGFGIPEEKHEKKVKFTYKGKEYTLTHGSVVIAAITSCTNTSNPSVMLAAGL 458 (898)
T ss_pred CCCChhhccCccccCCCHHHhhhhhhhhhccCCCccccccccccccCCcccccCCCceeEEEEeCCCCCCcHHHHHHHHH
Confidence 9999999999998852 12 89999999999999999999999
Q ss_pred HHh----cCCcce--ecEEEECccH-HHHHHhhcccccc
Q 013574 393 FLA----SVRAIS--IITFFRQPIE-SYKNLLHPSLNEM 424 (440)
Q Consensus 393 L~~----~G~kv~--Vr~~V~PaS~-V~~~~l~~G~~~~ 424 (440)
|++ +|+||+ |+++|+|||+ |+++++++|+++-
T Consensus 459 LakkAv~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~ 497 (898)
T PTZ00092 459 LAKKAVEKGLKVPPYIKTSLSPGSKVVTKYLEASGLLKY 497 (898)
T ss_pred HHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHcCcHHH
Confidence 942 699998 9999999999 9999999999764
No 27
>TIGR01341 aconitase_1 aconitate hydratase 1. This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=3.1e-87 Score=731.85 Aligned_cols=341 Identities=22% Similarity=0.293 Sum_probs=298.1
Q ss_pred CCCCCCCCeEEEeeeEEEecCCChHHHHHHHHH------HhCCCCcccCCc-cEEEEecCCCCCCC-----HHHHHHHHH
Q 013574 82 KPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKK------EFGENAKVWDRE-KIVIIPDHYIFTSD-----ERANRNVDI 149 (440)
Q Consensus 82 ~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~------e~G~~~~v~dp~-kvv~~~DH~vp~~~-----~~~~~~~~~ 149 (440)
++....+..|.++||+|++||+||.+++-.|.. ++|.++...+|. .+.+++||+++... ....+..++
T Consensus 53 ~~~~~~~~ei~f~p~RvllQD~TGvpa~vdlaAmrda~~~~G~d~~~inp~vPvdlviDHsv~~d~~~~~da~~~n~~~e 132 (876)
T TIGR01341 53 KIGEVADTEIAFKPARVVMQDFTGVPAVVDLAAMREAMKNLGGDPKKINPLVPVDLVIDHSVQVDYYGTEYALEFNMELE 132 (876)
T ss_pred cccCCCCceeccCchhheeccccCchHHHHHHHHHHHHHHcCCCHHHcCCCCCcceEeCCCCCCCCCCCcCHHHHHHHHH
Confidence 333446789999999999999999555555532 258777777888 78999999997752 222233344
Q ss_pred HHHHHHHcCcceeeecccCCCcccCCCCCeeeeeeeccc-------------ceecCCceEEecCCCCccCCcccceecc
Q 013574 150 LRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQE-------------GHCRPGEVLLGTDSHTCTAGAFGQFATG 216 (440)
Q Consensus 150 lr~fak~~gi~~f~d~~~~~~~~~~ppg~GI~Hqvl~ee-------------g~~~PG~~ivGtDSHT~t~GAlGala~G 216 (440)
+++.+++|++=. |....++||++.|||+|||||+..|. |++.|+ ++|||||||||+||||+||||
T Consensus 133 ~~rN~ery~fLk-w~~~~f~~~~v~ppg~GI~HqV~lE~la~~v~~~~~~g~g~a~Pd-tlVGtDSHT~t~GalG~la~G 210 (876)
T TIGR01341 133 FERNLERYQFLK-WAQKAFRNFRVVPPGTGIIHQVNLEYLATVVFKAEVDGELTAYPD-SLVGTDSHTTMINGLGVLGWG 210 (876)
T ss_pred HHhCHHHHhHHH-HHHHHcccCCCCCCCCCeeceechhhcccceeecccCCcceeccc-eeeecCCCCCCCCeecceEec
Confidence 444444444311 55666789999999999999999885 699995 899999999999999999999
Q ss_pred CCchhhhhhhccceEEeecCCceeEEEEeeCCCCccHhHHHHHHHHHhcccccCceEEEEecCcccCCChhhhhhhhhhc
Q 013574 217 IGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMV 296 (440)
Q Consensus 217 vG~td~a~~l~tG~~wlkvPetv~V~L~G~L~~gV~aKDviL~li~~l~~~G~~gk~vEF~G~gv~~LS~deR~Tl~NM~ 296 (440)
||++|++++|+||++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++|++|||+|+|+++||+++|||||||+
T Consensus 211 VGg~Eaeavmlgq~~~~~vPevvgV~LtG~L~~gVtAkDliL~i~~~L~~~G~vgk~VEF~G~gv~~LS~~dRaTIaNMa 290 (876)
T TIGR01341 211 VGGIEAEAAMLGQPYYMNVPEVIGVKLTGKLQEGVTATDLVLTVTQMLRKKGVVGKFVEFFGPGLSELSLADRATIANMA 290 (876)
T ss_pred ccHHHHHHHHhCCcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccCcceEEEEEeCccccccCHhHHhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCceeeeccCchhHHHHhhhcCCCC--------C----ccccCC-CCCcccEEEEEeCCCcceeeecCCCCCCccccc
Q 013574 297 VEAGGKNGVVPADGTTFKYLEDKTSLP--------Y----EPVYSD-EKASFLSEYRFDISKLEPLVAKPHSPDNRALAR 363 (440)
Q Consensus 297 ~E~GAk~gif~pD~~t~~yL~~~~~~~--------~----~~l~~D-~dA~Y~~~i~iDLs~LeP~VA~P~sPdnv~~v~ 363 (440)
+|+||++|+||+|++|++||+.+++.+ | .++++| ++|.|+++++||||+|||+||+|++|+|+.+++
T Consensus 291 ~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~l~~~y~k~~~l~~~d~~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~l~ 370 (876)
T TIGR01341 291 PEYGATCGFFPIDDVTLQYLRLTGRDGDHVELVEKYARAQGLFYDDSEEPRYTDVVELDLSDVEPSVAGPKRPQDRIPLR 370 (876)
T ss_pred hhhCceEEEEcCChhHHHHHHhCCCCHHHHHHHHHHHHhcccccCCCCCCceeEEEEEEcccceeeccCCCChhhccChh
Confidence 999999999999999999999988754 2 245677 899999999999999999999999999999999
Q ss_pred ccccc-----------------------------------eeceEEEecCCCCChHHHHHHHHHHHh----cCCcce--e
Q 013574 364 ECKDV-----------------------------------KIDRVYIGSCTGGKTEDFLAAAKVFLA----SVRAIS--I 402 (440)
Q Consensus 364 e~~g~-----------------------------------kId~v~IGSCTngr~eDL~~AA~vL~~----~G~kv~--V 402 (440)
|+.+. +||+||||||||||+||+++||+||++ +|+||+ |
T Consensus 371 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~I~~a~IgSCTN~s~~dl~~aA~lLakkA~~kG~kv~p~V 450 (876)
T TIGR01341 371 EVKAKFSKELEKNGGDKGFTLRKEPLKKKVNGQNKQLEDGAVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLKVPPYV 450 (876)
T ss_pred hcchhhhhHhhhhcccccccchhhhhheeccCcceecCCCcEEEEEeeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCc
Confidence 88764 599999999999999999999999953 699998 9
Q ss_pred cEEEECccH-HHHHHhhcccccc
Q 013574 403 ITFFRQPIE-SYKNLLHPSLNEM 424 (440)
Q Consensus 403 r~~V~PaS~-V~~~~l~~G~~~~ 424 (440)
+++|+|||+ |+++++++||++.
T Consensus 451 k~~v~PGS~~V~~~l~~~Gl~~~ 473 (876)
T TIGR01341 451 KTSLAPGSKVVTDYLAESGLLPY 473 (876)
T ss_pred cEEEeCCCHHHHHHHHHCCcHHH
Confidence 999999999 9999999999864
No 28
>PLN00070 aconitate hydratase
Probab=100.00 E-value=7.4e-87 Score=731.34 Aligned_cols=337 Identities=21% Similarity=0.282 Sum_probs=300.3
Q ss_pred CCCCeEEEeeeEEEecCCCh-HHHHHH-----HHHHhCCCCcccCCc-cEEEEecCCCCCCC----HH-HHHHHHHHHHH
Q 013574 86 SPGDNVWVNVDILMTHDVCG-PGSFGI-----FKKEFGENAKVWDRE-KIVIIPDHYIFTSD----ER-ANRNVDILRDF 153 (440)
Q Consensus 86 ~~Gd~v~v~vD~v~~hD~tg-p~~~~~-----~~~e~G~~~~v~dp~-kvv~~~DH~vp~~~----~~-~~~~~~~lr~f 153 (440)
..+..|.++|++|++||+|| |.++++ ..+++|.+++..+|. .+.+++||++.... .. ..+...++++.
T Consensus 113 ~~~~ei~f~P~RV~~QD~Tgvpa~vdlAamr~a~~~~g~dp~~inp~vPvdlviDHsvqvd~~g~~~a~~~n~~~e~~rN 192 (936)
T PLN00070 113 PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNNLGGDPNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRN 192 (936)
T ss_pred CCCceeccCCceEEeecCCCCcceeHHHHHHHHHHHcCCCccccCCCCCcceEecCceeecccCCcCHHHHHHHHHHHHh
Confidence 45678999999999999999 665555 233478788888999 88899999997542 22 23334567777
Q ss_pred HHHcCcceeeecccCCCcccCCCCCeeeeeeecc---------cceecCCceEEecCCCCccCCcccceeccCCchhhhh
Q 013574 154 CMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQ---------EGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGF 224 (440)
Q Consensus 154 ak~~gi~~f~d~~~~~~~~~~ppg~GI~Hqvl~e---------eg~~~PG~~ivGtDSHT~t~GAlGala~GvG~td~a~ 224 (440)
+++|++- .|..+.+.||+++|||+|||||+..| +|++.|| ++|||||||||+||||+||||||++|+++
T Consensus 193 ~Ery~fl-kw~~~af~~~~vvpPG~GI~HQV~lE~la~~v~~~~G~~~Pd-tlVGtDSHT~~~GglG~lg~GVGg~Eaea 270 (936)
T PLN00070 193 KERFAFL-KWGSTAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEA 270 (936)
T ss_pred HHHhChh-hhhhhhhcCccccCCCCceEeeechhhhcccccccCCcccCC-eEEeCCcccCCCCcccccEecccHHHHHH
Confidence 7777764 37888899999999999999999999 8999996 59999999999999999999999999999
Q ss_pred hhccceEEeecCCceeEEEEeeCCCCccHhHHHHHHHHHhcccccCceEEEEecCcccCCChhhhhhhhhhccccCceee
Q 013574 225 VLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNG 304 (440)
Q Consensus 225 ~l~tG~~wlkvPetv~V~L~G~L~~gV~aKDviL~li~~l~~~G~~gk~vEF~G~gv~~LS~deR~Tl~NM~~E~GAk~g 304 (440)
+|++|++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++|++|||+|+|+++||+++|||||||++|+||++|
T Consensus 271 aMlgqp~~~~vPevvgV~LtG~L~~GVtAKDliL~i~~~Lr~~GvvGk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g 350 (936)
T PLN00070 271 AMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMG 350 (936)
T ss_pred HHhCCeEEeeCCCEEEEEEEeecCCCCCHhHHHHHHHHHhCcCccceEEEEEeCCccccCCHhHHhhHhhcchhhCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCchhHHHHhhhcCCCCCc----------------cccCCCCCcccEEEEEeCCCcceeeecCCCCCCcccccccccc
Q 013574 305 VVPADGTTFKYLEDKTSLPYE----------------PVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDV 368 (440)
Q Consensus 305 if~pD~~t~~yL~~~~~~~~~----------------~l~~D~dA~Y~~~i~iDLs~LeP~VA~P~sPdnv~~v~e~~g~ 368 (440)
+||+|++|++||+.+++.+.. ...+|++|.|+++++||||+|||+||+|++|+|+.|++++.+.
T Consensus 351 ~FP~De~T~~YL~~tgR~~~~~~~v~~y~k~~~l~~~~~~~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~ 430 (936)
T PLN00070 351 FFPVDHVTLQYLKLTGRSDETVAMIEAYLRANKMFVDYNEPQQERVYSSYLELDLEDVEPCISGPKRPHDRVPLKEMKAD 430 (936)
T ss_pred EecCChHHHHHHHhCCCCHHHHHHHHHHHHhccccccccCCCCCCceeEEEEEEcccceEecCCCcChhcCcCHHHhhhh
Confidence 999999999999998875421 1367899999999999999999999999999999999887430
Q ss_pred ---------------------------------------eeceEEEecCCCCChHHHHHHHHHHHh----cCCcce--ec
Q 013574 369 ---------------------------------------KIDRVYIGSCTGGKTEDFLAAAKVFLA----SVRAIS--II 403 (440)
Q Consensus 369 ---------------------------------------kId~v~IGSCTngr~eDL~~AA~vL~~----~G~kv~--Vr 403 (440)
.||+||||||||+|++|+++||++|++ +|+||+ |+
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTNts~~dl~~aA~lLakkA~~~Glkv~p~Vk 510 (936)
T PLN00070 431 WHSCLDNKVGFKGFAVPKEAQSKVAKFSFHGQPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWIK 510 (936)
T ss_pred HHHhhcccccccccccchhhhhhhhhhhccCCCCCcccCCEeEEEEECCCCCCcHHHHHHHHHHHHHHHhcCCccCCCcc
Confidence 267899999999999999999999964 699998 99
Q ss_pred EEEECccH-HHHHHhhcccccc
Q 013574 404 TFFRQPIE-SYKNLLHPSLNEM 424 (440)
Q Consensus 404 ~~V~PaS~-V~~~~l~~G~~~~ 424 (440)
++|+|||+ |+++++++|+++.
T Consensus 511 ~~vaPGS~~V~~~l~~~Gl~~~ 532 (936)
T PLN00070 511 TSLAPGSGVVTKYLLKSGLQKY 532 (936)
T ss_pred EEEeCCCHHHHHHHHHCCcHHH
Confidence 99999999 9999999999864
No 29
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) (PubMed:12473114).
Probab=100.00 E-value=1.1e-86 Score=725.26 Aligned_cols=353 Identities=20% Similarity=0.231 Sum_probs=303.9
Q ss_pred CCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHH------HHHhCCCCcccCCc-cEEEEecCCCCCC
Q 013574 67 NAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIF------KKEFGENAKVWDRE-KIVIIPDHYIFTS 139 (440)
Q Consensus 67 ~~mTl~EKIla~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~------~~e~G~~~~v~dp~-kvv~~~DH~vp~~ 139 (440)
.|.++.|+|.+-..+ ..+..|.++|++|++||+||..++-.| .+++|.+++..||. .+.+++||++...
T Consensus 49 d~~~~~~~~~~~~~w----~~~~ei~f~P~RV~mqD~Tgvpa~vdlAamr~a~~~~g~dp~~inp~vP~dlviDHsv~vd 124 (858)
T TIGR02333 49 DPETLSASLLQIIER----KRDLDFPWYPARVVCHDILGQTALVDLAGLRDAIAEKGGDPAQVNPVVPTQLIVDHSLAVE 124 (858)
T ss_pred CChhhHHHHHHHHcC----CCCCeeccCcceeeeccccCcchhhhHhhhHHHHHHcCCChhhcCCCCCCeEEeCCcceec
Confidence 456676664333322 456789999999999999994444333 23478888889999 9999999999653
Q ss_pred CHH---HHHHHHHHHHHHHHcCccee--eecccCCCcccCCCCCeeeeeeeccc---------ceecCCceEEecCCCCc
Q 013574 140 DER---ANRNVDILRDFCMEQNIKYF--YDIKDLGNFKANPDYKGVCHIALAQE---------GHCRPGEVLLGTDSHTC 205 (440)
Q Consensus 140 ~~~---~~~~~~~lr~fak~~gi~~f--~d~~~~~~~~~~ppg~GI~Hqvl~ee---------g~~~PG~~ivGtDSHT~ 205 (440)
... .+-..+.-++|.++..++.| |....+.||++.|||+|||||++.|. |++.| +++||||||||
T Consensus 125 ~~g~~~da~~~n~~~e~~rN~Ery~FLkwa~~af~~~~~~ppG~GI~HQV~lE~la~vv~~~~G~a~P-d~ivGTDSHT~ 203 (858)
T TIGR02333 125 YGGFDPDAFEKNRAIEDRRNEDRFHFINWTKTAFKNVDVIPAGNGIMHQINLEKMSPVIQVKNGVAFP-DTCVGTDSHTP 203 (858)
T ss_pred cCCCCcchhHHHHHHHHhhhHHHHHHHHHHHHHhCCcEEeCCCCCEeeeEchhhccccccccCCcccC-CeEEecCCCCC
Confidence 221 12112233366666666555 55555789999999999999999885 89999 68999999999
Q ss_pred cCCcccceeccCCchhhhhhhccceEEeecCCceeEEEEeeCCCCccHhHHHHHHHHHhcccccCceEEEEecCcccCCC
Q 013574 206 TAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLS 285 (440)
Q Consensus 206 t~GAlGala~GvG~td~a~~l~tG~~wlkvPetv~V~L~G~L~~gV~aKDviL~li~~l~~~G~~gk~vEF~G~gv~~LS 285 (440)
|+||||+||||||++|++++|+||++||++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|+|+++||
T Consensus 204 ~~GgLG~lg~GVGg~Ea~aamlg~p~~l~vPevIgV~LtG~L~~gVtakDliL~i~~~Lr~~Gvvgk~VEF~G~gv~~LS 283 (858)
T TIGR02333 204 HVDALGVIAIGVGGLEAETVMLGRASMMRLPDIVGVELTGKRQPGITATDIVLALTEFLRKERVVSAYLEFFGEGARALT 283 (858)
T ss_pred CCCccceeEecCCHHHHHHHHhCCeeeeeCCcEEEEEEEeecCCCCCHhHHHHHHHHHHhhcCccceEEEEeCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhccccCceeeeccCchhHHHHhhhcCCCCC--c---------ccc--CCCCCcccEEEEEeCCCcceeeec
Q 013574 286 MEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPY--E---------PVY--SDEKASFLSEYRFDISKLEPLVAK 352 (440)
Q Consensus 286 ~deR~Tl~NM~~E~GAk~gif~pD~~t~~yL~~~~~~~~--~---------~l~--~D~dA~Y~~~i~iDLs~LeP~VA~ 352 (440)
+++|||||||++|+||++|+||+|++|++||+.+++.+. + .++ +|++|.|+++++||||+|||+||+
T Consensus 284 ~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tgR~~~~~~lve~y~k~~~l~~d~d~~a~Y~~vieiDLs~leP~VAg 363 (858)
T TIGR02333 284 IGDRATISNMTPEYGATAAMFYIDEQTIDYLKLTGREPEQVKLVETYAKAAGLWADSLKHAVYERVLEFDLSSVVRNMAG 363 (858)
T ss_pred HHHHHHHhccchhhCceEEEECCChhHHHHHHhcCCchhHHHHHHHHHHHHHhhcCcCCCCCeEEEEEEEcccceecccC
Confidence 999999999999999999999999999999998877541 1 123 569999999999999999999999
Q ss_pred CCCCCCcccccccccc-----------------eeceEEEecCCCCChHHHHHHHHHHHh----cCCcce--ecEEEECc
Q 013574 353 PHSPDNRALARECKDV-----------------KIDRVYIGSCTGGKTEDFLAAAKVFLA----SVRAIS--IITFFRQP 409 (440)
Q Consensus 353 P~sPdnv~~v~e~~g~-----------------kId~v~IGSCTngr~eDL~~AA~vL~~----~G~kv~--Vr~~V~Pa 409 (440)
|++|||+.|++|+++. +|++||||||||||+||++.||++|++ +|+||+ |+++|+||
T Consensus 364 P~~Pd~~vpl~e~~~~~~~~~~~~~~~g~l~~g~V~ia~IgSCTN~s~~d~~~aA~lLak~A~~~Glkv~p~Vk~~v~PG 443 (858)
T TIGR02333 364 PSNPHARVPTSDLAARGIAGPAEEQPEGLMPDGAVIIAAITSCTNTSNPRNVVAAGLLARNANQLGLKRKPWVKTSFAPG 443 (858)
T ss_pred CCChhhcCCHHHhhhccccccccccccCcccCCceeEEEEECCCCCCCHhHHHHHHHHHHHHHhcCCCcCCCeeEEEeCC
Confidence 9999999999988753 379999999999999999999999963 699998 99999999
Q ss_pred cH-HHHHHhhcccccc
Q 013574 410 IE-SYKNLLHPSLNEM 424 (440)
Q Consensus 410 S~-V~~~~l~~G~~~~ 424 (440)
|+ |+++++++||++-
T Consensus 444 S~~V~~~l~~~Gl~~~ 459 (858)
T TIGR02333 444 SKVAQLYLEEAGLLPE 459 (858)
T ss_pred CHHHHHHHHHcCcHHH
Confidence 99 9999999999864
No 30
>cd01586 AcnA_IRP Aconitase A catalytic domain. Aconitase A catalytic domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydrolyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=5.5e-87 Score=681.94 Aligned_cols=296 Identities=23% Similarity=0.333 Sum_probs=270.6
Q ss_pred EEEecCCCh-HHHHHHH-----HHHhCCCCcccCCc-cEEEEecCCCCCC-----CHHHHHHHHHHHHHHHHcCcceeee
Q 013574 97 ILMTHDVCG-PGSFGIF-----KKEFGENAKVWDRE-KIVIIPDHYIFTS-----DERANRNVDILRDFCMEQNIKYFYD 164 (440)
Q Consensus 97 ~v~~hD~tg-p~~~~~~-----~~e~G~~~~v~dp~-kvv~~~DH~vp~~-----~~~~~~~~~~lr~fak~~gi~~f~d 164 (440)
+|++||+|| |.++++. ..+.|.+++..+|. .+.++.||++++. +....+..+.+++.+++|++.+ |.
T Consensus 1 Rv~~~D~tg~p~lvDlaa~R~~~~~~g~d~~~~~p~~p~~l~~DH~v~~~~~~~~~~~~~~~~~~~~~N~e~~~~~~-~~ 79 (404)
T cd01586 1 RVILQDFTGVPAVVDLAAMRDAVKRLGGDPEKINPLIPVDLVIDHSVQVDFYGTADALAKNMKLEFERNRERYEFLK-WG 79 (404)
T ss_pred CccceecCCccHHHhHHHHHHHHHHhCCChhhcCCCCCcceEcCCCCCCCCccccCHHHHHHHHHHHhhHHHHHHHH-HH
Confidence 478899999 6555543 23478888888998 9999999999886 3444456678888899988865 55
Q ss_pred cccCCCcccCCCCCeeeeeeecc-------------cceecCCceEEecCCCCccCCcccceeccCCchhhhhhhccceE
Q 013574 165 IKDLGNFKANPDYKGVCHIALAQ-------------EGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKV 231 (440)
Q Consensus 165 ~~~~~~~~~~ppg~GI~Hqvl~e-------------eg~~~PG~~ivGtDSHT~t~GAlGala~GvG~td~a~~l~tG~~ 231 (440)
...++|+++.||++|||||++.| +|+++| ++++|+||||||+||||+||||+|++|++.+|+||++
T Consensus 80 ~~~~~~~~~~~pg~GI~Hqv~~E~~a~~~~~~~~~~~g~~~P-~~ivg~DSHT~t~GalGala~GvG~te~~~~ma~~~~ 158 (404)
T cd01586 80 QKAFKNLRVVPPGTGIIHQVNLEYLARVVFTSEEDGDGVAYP-DSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPI 158 (404)
T ss_pred HHHhCCCCCCCCCCCEeeeehhhhcccceeecccCCCceEee-eeEeecCCCCccCCcccceEecccHHHHHHHHhCCcc
Confidence 66678899999999999999966 789999 5999999999999999999999999999999999999
Q ss_pred EeecCCceeEEEEeeCCCCccHhHHHHHHHHHhcccccCceEEEEecCcccCCChhhhhhhhhhccccCceeeeccCchh
Q 013574 232 LLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGT 311 (440)
Q Consensus 232 wlkvPetv~V~L~G~L~~gV~aKDviL~li~~l~~~G~~gk~vEF~G~gv~~LS~deR~Tl~NM~~E~GAk~gif~pD~~ 311 (440)
|||+||+|+|+|+|+|++||++|||||+|+++|+.+|++|+++||+|+|+++||+++|||||||++|+||++|+||||
T Consensus 159 ~~~vP~~i~V~l~G~l~~gVtaKDviL~li~~l~~~G~~g~~iEf~G~gi~~LS~~~R~Ti~NMa~E~GA~~gif~~D-- 236 (404)
T cd01586 159 SMLLPEVVGVKLTGKLRPGVTATDLVLTVTQMLRKVGVVGKFVEFFGPGVAKLSVADRATIANMAPEYGATCGFFPVD-- 236 (404)
T ss_pred ccCCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECcccccccHhHhhhhhccchhhCceeeEeccC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCCccccCCCCCcccEEEEEeCCCcceeeecCCCCCCcccccccccceeceEEEecCCCCChHHHHHHHH
Q 013574 312 TFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAK 391 (440)
Q Consensus 312 t~~yL~~~~~~~~~~l~~D~dA~Y~~~i~iDLs~LeP~VA~P~sPdnv~~v~e~~g~kId~v~IGSCTngr~eDL~~AA~ 391 (440)
+++++||||+|||+||+|++|||+.|+ +.+|||||||||||||+|||++||+
T Consensus 237 ------------------------d~~i~iDls~leP~Va~P~~Pd~v~~v----~~~Id~v~IGSCTNgr~eDl~~aA~ 288 (404)
T cd01586 237 ------------------------TQVVELDLSTVEPSVSGPKRPQDRVPL----HGSVVIAAITSCTNTSNPSVMLAAG 288 (404)
T ss_pred ------------------------ceEEEEEcccceeeecCCCCcccccCc----CCcEeEEEEEcCCCCCCHHHHHHHH
Confidence 689999999999999999999999999 4599999999999999999999999
Q ss_pred HHH----hcCCcce--ecEEEECccH-HHHHHhhcccccc
Q 013574 392 VFL----ASVRAIS--IITFFRQPIE-SYKNLLHPSLNEM 424 (440)
Q Consensus 392 vL~----~~G~kv~--Vr~~V~PaS~-V~~~~l~~G~~~~ 424 (440)
+|. .+|+|++ |+++|+|+|+ |+++++++|+++-
T Consensus 289 iL~~~a~~kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~ 328 (404)
T cd01586 289 LLAKKAVELGLKVKPYVKTSLAPGSRVVTKYLEASGLLPY 328 (404)
T ss_pred HHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCChHHH
Confidence 993 2599998 9999999999 9999999999763
No 31
>COG1048 AcnA Aconitase A [Energy production and conversion]
Probab=100.00 E-value=5.9e-78 Score=650.80 Aligned_cols=348 Identities=24% Similarity=0.345 Sum_probs=296.6
Q ss_pred CCCcHHHHHHHHhcCCC---------CC-------CCCCeEEEeeeEEEecCCChHH-HHH-----HHHHHhCCCCcccC
Q 013574 67 NAMTLTEKIFSRASEKP---------QL-------SPGDNVWVNVDILMTHDVCGPG-SFG-----IFKKEFGENAKVWD 124 (440)
Q Consensus 67 ~~mTl~EKIla~~~~~~---------~v-------~~Gd~v~v~vD~v~~hD~tgp~-~~~-----~~~~e~G~~~~v~d 124 (440)
+..+.++|||.+|..+. .+ .+...+..+|++|++||+|+.. +++ ....++|.++...+
T Consensus 31 ~~Lp~s~kiL~e~l~r~~d~~~~~i~~~~~w~~~~~~~~ei~~~p~RVvmQD~tgvpa~vdla~mr~a~~~~g~dp~~in 110 (861)
T COG1048 31 SKLPYSLKILLENLLRGEDGTEEHIEALARWLPSGKPEKEIAFRPARVVMQDFTGVPAVVDLAAMRDAMVELGGDPAKIN 110 (861)
T ss_pred ccCChhHHHHHHHhccccccchhHHHHHhccccccCcccccccccceeeeecccCCCeeEEhhhHHHHHHHhcCChhhcC
Confidence 35789999999887553 11 2346788999999999999933 221 11234676566667
Q ss_pred Cc-cEEEEecCCCCCC----------C-----HHHHHHHHHHHHHHHHcCcceeeecccCCCcccCCCCCeeeeeeeccc
Q 013574 125 RE-KIVIIPDHYIFTS----------D-----ERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQE 188 (440)
Q Consensus 125 p~-kvv~~~DH~vp~~----------~-----~~~~~~~~~lr~fak~~gi~~f~d~~~~~~~~~~ppg~GI~Hqvl~ee 188 (440)
|. .+.+++||++... + +++.+.|++|+.+++ .+.||+++|||.|||||++.|.
T Consensus 111 P~~pvdLviDHsv~vd~~g~~~a~~~n~~~e~~rN~ery~FL~w~~k-----------af~n~~vvPPGtGIiHQVnLE~ 179 (861)
T COG1048 111 PVVPVDLVIDHSVQVDVGGDPDAFEKNVELEFERNGERYKFLKWAAK-----------AFYNFRVVPPGTGIIHQVNLEY 179 (861)
T ss_pred CCCcceeeecceeeeecCCChhhhhhhhhhHhhhhhHHHHHHHHHHH-----------hcCCcEEECCCCceeeeehHhh
Confidence 77 9999999999632 1 224455666665544 2346677899999999988765
Q ss_pred c----eecCC----ceEEecCCCCccCCcccceeccCCchhhhhhhccceEEeecCCceeEEEEeeCCCCccHhHHHHHH
Q 013574 189 G----HCRPG----EVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQI 260 (440)
Q Consensus 189 g----~~~PG----~~ivGtDSHT~t~GAlGala~GvG~td~a~~l~tG~~wlkvPetv~V~L~G~L~~gV~aKDviL~l 260 (440)
. +.+|| +++|||||||+|+|+||+||||||+.|++++|+++++||++|++|+|+|+|+||+|+|||||||+|
T Consensus 180 la~vv~~~~g~a~pdtlvGTDSHTtminGLGvLgwGVGGiEAeaaMlG~p~~~~iP~VvGVkLtGkl~~gvTatDlvL~v 259 (861)
T COG1048 180 LAKVVWAKPGVAYPDTLVGTDSHTTMIGGLGVLGWGVGGIEAEAAMLGQPWYMLIPEVVGVKLTGKLPEGVTATDLVLTV 259 (861)
T ss_pred hccceeccCcccccCceeeccCCCCCcCcceEEEeccchHHHHHHHcCCceEeeCCcEEEEEEeccCCCCCCHHHHHHHH
Confidence 2 33499 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccCceEEEEecCcccCCChhhhhhhhhhccccCceeeeccCchhHHHHhhhcCCCC--------Ccc------
Q 013574 261 IGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLP--------YEP------ 326 (440)
Q Consensus 261 i~~l~~~G~~gk~vEF~G~gv~~LS~deR~Tl~NM~~E~GAk~gif~pD~~t~~yL~~~~~~~--------~~~------ 326 (440)
++.|+.+|.+||+|||+|||+++||+++|+|||||++|+||++|+||.|++|++||+.++|.+ |..
T Consensus 260 t~~Lr~~gvVgkfVEFfG~Gv~~Ls~~dRaTI~NM~pEyGAT~g~FPiDe~tl~YL~~tgR~~~~i~lve~y~~~~~l~~ 339 (861)
T COG1048 260 TGMLRKKGVVGKFVEFFGPGVASLSLADRATIANMGPEYGATSGFFPIDEETLDYLRLTGRSEEQVALVEAYAKAQGLWY 339 (861)
T ss_pred HHHHHhcCccceEEEEECCchhhCCcccceeeeccccccccccccCCCCHHHHHHHHHhCCchHHHHHHHHHHHHhcccC
Confidence 999999999999999999999999999999999999999999999999999999999988843 211
Q ss_pred ccCCCCCcccEEEEEeCCCcceeeecCCCCCCccccccccc------------------------ceeceEEEecCCCCC
Q 013574 327 VYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKD------------------------VKIDRVYIGSCTGGK 382 (440)
Q Consensus 327 l~~D~dA~Y~~~i~iDLs~LeP~VA~P~sPdnv~~v~e~~g------------------------~kId~v~IGSCTngr 382 (440)
..+|++|.|+++++||||+|+|.||+|++|+|+.+++++.. .+|.++.|+||||++
T Consensus 340 ~~~~~~a~Y~~~lelDLS~v~p~lAGP~~P~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~V~iaaItSCTNtS 419 (861)
T COG1048 340 DPADKDAEYDKVLELDLSTVEPSLAGPKRPQDRVPLSEVAENFEKILREIEIKRVYSLLGKELGDGKVVIAAITSCTNTS 419 (861)
T ss_pred CccccCCccceeEEEEhhhCcccccCCCChhhceEHHHHHHHHHHhhhhhhcccccccccccCCCCcEEEEEEeeccCCC
Confidence 23678999999999999999999999999999999987765 789999999999999
Q ss_pred hHHHHHHHHHHHh----cCCcce--ecEEEECccH-HHHHHhhccccccc
Q 013574 383 TEDFLAAAKVFLA----SVRAIS--IITFFRQPIE-SYKNLLHPSLNEME 425 (440)
Q Consensus 383 ~eDL~~AA~vL~~----~G~kv~--Vr~~V~PaS~-V~~~~l~~G~~~~~ 425 (440)
++|++.||.+|++ +|+|++ |++.|+|+|+ |-..+.+.|++..-
T Consensus 420 np~v~~aAgllak~a~~~Gl~v~p~VktslAPGS~vV~~yL~~~Gl~~~L 469 (861)
T COG1048 420 NPDVLIAAGLLAKKAVEKGLKVKPWVKTSVAPGSKVVTEYLEKAGLLPYL 469 (861)
T ss_pred CHHHHHHHHHHHhhHHhcccCCCCCeeEeeCCCcHHHHHHHHHcCCHHHH
Confidence 9999999999984 788887 9999999999 77777779987643
No 32
>KOG0453 consensus Aconitase/homoaconitase (aconitase superfamily) [Energy production and conversion; Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-77 Score=621.69 Aligned_cols=340 Identities=27% Similarity=0.382 Sum_probs=307.0
Q ss_pred CCCcHHHHHHHHhcCCC----CCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCC----
Q 013574 67 NAMTLTEKIFSRASEKP----QLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFT---- 138 (440)
Q Consensus 67 ~~mTl~EKIla~~~~~~----~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~G~~~~v~dp~kvv~~~DH~vp~---- 138 (440)
.++|++||||..|...+ -++-++++.++||+|++||.|..+++-+|.. .| ..++.+|.. +.+||.+-+
T Consensus 57 ~p~tl~EKIlyshl~~p~~~~i~Rg~~Yl~lrPdrva~qDasaqma~LqFms-~G-l~kvavPst--IhCdhli~a~~gg 132 (778)
T KOG0453|consen 57 PPLTLTEKILYSHLDNPPEQKIVRGGSYLKLRPDRVAMQDASAQMALLQFMS-SG-LKKVAVPST--IHCDHLIEAQVGG 132 (778)
T ss_pred CCchhhHHHHHhhccCCcccceecccceEEEcccceecccchhhHHHHHHHh-cC-cccccCCce--EEecceeeeccCC
Confidence 37999999999998653 3677899999999999999998778777754 67 488999976 677886643
Q ss_pred ------CCHHHHHHHHHHHHHHHHcCcceeeecccCCCcccCCCCCeeeeeeecccceecCCceEEecCCCCccCCcccc
Q 013574 139 ------SDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQ 212 (440)
Q Consensus 139 ------~~~~~~~~~~~lr~fak~~gi~~f~d~~~~~~~~~~ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GAlGa 212 (440)
....+.+.+++|.+||++|||.| | |||.||+||++.|+ |+.||-++|||||||+++|+||+
T Consensus 133 ~~Dl~~a~~~Nkevydfl~saakkygi~F-w-----------~pGsGIiHQIvlEn-YAfPG~m~igTDSHTpn~GGLG~ 199 (778)
T KOG0453|consen 133 DKDLQRASDLNKEVYDFLESAAKKYGIGF-W-----------KPGSGIIHQIVLEN-YAFPGLMMIGTDSHTPNAGGLGC 199 (778)
T ss_pred cchhhhhhhhhHHHHHHHHHHHHhcCCCc-c-----------CCCCceeeeeeeec-ccCCcceEEeccCCCCCCCccce
Confidence 33445566899999999999985 5 57899999999887 99999999999999999999999
Q ss_pred eeccCCchhhhhhhccceEEeecCCceeEEEEeeCCCCccHhHHHHHHHHHhcccccCceEEEEecCcccCCChhhhhhh
Q 013574 213 FATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTL 292 (440)
Q Consensus 213 la~GvG~td~a~~l~tG~~wlkvPetv~V~L~G~L~~gV~aKDviL~li~~l~~~G~~gk~vEF~G~gv~~LS~deR~Tl 292 (440)
|++|||++|++.+|++.++.||.|++++|+|+|+|+.|.++|||||+|.+.|+++|++|.+|||+||||++||.+.|.||
T Consensus 200 l~igVggaDAvdvmA~~pWelk~PkvigV~LtG~l~gwtSpKDvIlklagiltvkggtg~iiEy~G~Gv~slSctgm~TI 279 (778)
T KOG0453|consen 200 LAIGVGGADAVDVMATQPWELKCPKVIGVKLTGQLPGWTSPKDVILKLAGILTVKGGTGHIIEYFGPGVNSLSCTGMATI 279 (778)
T ss_pred eeeccccchHHHHhcCCCceecCCceEEEEEeeecCCCCChhHHHHhhhceeeecCccceeEEEecCccceeccccceee
Confidence 99999999999999996666999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCceeeeccCchhHHHHhhhcCCCCC---------ccccCCCCCcccEEEEEeCCCcceeeecCCCCCCccccc
Q 013574 293 CNMVVEAGGKNGVVPADGTTFKYLEDKTSLPY---------EPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAR 363 (440)
Q Consensus 293 ~NM~~E~GAk~gif~pD~~t~~yL~~~~~~~~---------~~l~~D~dA~Y~~~i~iDLs~LeP~VA~P~sPdnv~~v~ 363 (440)
|||++|+||++++||.|+.+.+||+..++.+. ..+.+|++|.|++.|+||||+|+|+|.+|++||-..|++
T Consensus 280 cNMgaEiGAtTs~FP~n~~m~~yL~atgr~~ia~~a~~~~~~~l~AD~~a~Ydk~ieIdLstL~P~vnGPfTpdl~~pvs 359 (778)
T KOG0453|consen 280 CNMGAEIGATTSLFPYNERMIDYLQATGRNEIAREARETLDAILAADKGAHYDKIIEIDLSTLEPHVNGPFTPDLSTPVS 359 (778)
T ss_pred ccccccccccccccCCCHHHHHHHHHhCcccchhhhHHhhhhcccCCCCCCcceEEEEEhhhcccccCCCCCccccChHH
Confidence 99999999999999999999999999877531 247899999999999999999999999999999999998
Q ss_pred cccc--------ceeceEEEecCCCCChHHHHHHHHHHH---hcCCcceecEEEECccH-HHHHHhhccccc
Q 013574 364 ECKD--------VKIDRVYIGSCTGGKTEDFLAAAKVFL---ASVRAISIITFFRQPIE-SYKNLLHPSLNE 423 (440)
Q Consensus 364 e~~g--------~kId~v~IGSCTngr~eDL~~AA~vL~---~~G~kv~Vr~~V~PaS~-V~~~~l~~G~~~ 423 (440)
+++. ++|-..+||||||+|+|||..||.|.+ .+|.|-+|.+.|+|+|+ |-..+.+.|+.|
T Consensus 360 kl~e~~~kn~wp~~i~~gligSCTNSsyeDm~raa~iv~~a~~~glk~~v~F~VtpgSeqirAtierdG~~e 431 (778)
T KOG0453|consen 360 KLGENSEKNGWPIKIKVGLIGSCTNSSYEDMSRAADIVKQAKGKGLKPKVPFYVTPGSEQIRATIERDGIWE 431 (778)
T ss_pred HHhHHhhhcCCceeeeeeEEEeecCccHHHHHHHHHHHHHHHhcCCCCCcceEeccChHHhhhhHhhcchHH
Confidence 8764 788899999999999999999999995 46677779999999999 988888899865
No 33
>KOG0452 consensus RNA-binding translational regulator IRP (aconitase superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-57 Score=471.71 Aligned_cols=350 Identities=21% Similarity=0.307 Sum_probs=290.2
Q ss_pred cHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCCh-HHHHHHH-----HHHhCCCCcccCCc-cEEEEecCCCCCCCHH
Q 013574 70 TLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCG-PGSFGIF-----KKEFGENAKVWDRE-KIVIIPDHYIFTSDER 142 (440)
Q Consensus 70 Tl~EKIla~~~~~~~v~~Gd~v~v~vD~v~~hD~tg-p~~~~~~-----~~e~G~~~~v~dp~-kvv~~~DH~vp~~~~~ 142 (440)
-=+|+||.+.... +.--.|-++|-+|++||+|| |.+++.. .+.+|+++...+|- .+.+++||.++-.-.+
T Consensus 61 ~DVe~IldW~~t~---~k~vEvpFkPARViLQDFTGvPavVD~AaMRdAv~~lGgdp~KinP~cP~DLviDHSvQvDf~r 137 (892)
T KOG0452|consen 61 KDVENILDWKNTQ---KKQVEVPFKPARVILQDFTGVPAVVDFAAMRDAVKNLGGDPEKINPLCPVDLVIDHSVQVDFAR 137 (892)
T ss_pred HHHHHHhCccccC---ccceeeccccceeeeecccCCchheeHHHHHHHHHHcCCCHHHcCCCCCcceEeeeeeEEeecc
Confidence 4478888864321 11235778999999999999 5555432 23478777777887 8899999999654333
Q ss_pred HHHHHH--HHHHHHHHcCccee--eecccCCCcccCCCCCeeeeeee---------cccceecCCceEEecCCCCccCCc
Q 013574 143 ANRNVD--ILRDFCMEQNIKYF--YDIKDLGNFKANPDYKGVCHIAL---------AQEGHCRPGEVLLGTDSHTCTAGA 209 (440)
Q Consensus 143 ~~~~~~--~lr~fak~~gi~~f--~d~~~~~~~~~~ppg~GI~Hqvl---------~eeg~~~PG~~ivGtDSHT~t~GA 209 (440)
+++..+ +-.||-|+.....| |-...+.|+.++|||.||.||+- .+..++.| |-+|||||||+|..+
T Consensus 138 ~~~alqkN~~lEF~RNkERf~FlKWgs~af~NmlivPPGsGivHQvNLEYLaRvVF~~~~~lyP-DSvVGTDSHtTMidG 216 (892)
T KOG0452|consen 138 SADALQKNQELEFERNKERFTFLKWGSRAFDNMLIVPPGSGIVHQVNLEYLARVVFESKDLLYP-DSVVGTDSHTTMIDG 216 (892)
T ss_pred CHHHHhhcceeeeecchhhhhhhhhhhHhhcceEEeCCCCceeEEeehhhhhheeeccCceecc-cccccccCcceeecc
Confidence 222211 11256665554444 55666899999999999999963 33567888 899999999999999
Q ss_pred ccceeccCCchhhhhhhccceEEeecCCceeEEEEeeCCCCccHhHHHHHHHHHhcccccCceEEEEecCcccCCChhhh
Q 013574 210 FGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEER 289 (440)
Q Consensus 210 lGala~GvG~td~a~~l~tG~~wlkvPetv~V~L~G~L~~gV~aKDviL~li~~l~~~G~~gk~vEF~G~gv~~LS~deR 289 (440)
||.+|||||+.|++++|+++++.|.+|++|+++|+|+|.++|++.|++|.|.+.|+.-|.+||.+||+|+|+.+||+.+|
T Consensus 217 lGvlGWGVGGIEaEAvMLGqpiSmvlP~ViG~~L~Gkl~~~vTstDlVLtiTk~LRq~GVvGKFVEF~G~Gva~LSiaDR 296 (892)
T KOG0452|consen 217 LGVLGWGVGGIEAEAVMLGQPISMVLPEVIGYKLTGKLSPLVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVAELSIADR 296 (892)
T ss_pred cceeeccccceehhhhhhcCchheecccceeEEeccccCCCceeehhhhhHHHHHHHhccceeeEEEecCccceechhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccCceeeeccCchhHHHHhhhcCCCCCc------------cc----cCCCCCcccEEEEEeCCCcceeeecC
Q 013574 290 MTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYE------------PV----YSDEKASFLSEYRFDISKLEPLVAKP 353 (440)
Q Consensus 290 ~Tl~NM~~E~GAk~gif~pD~~t~~yL~~~~~~~~~------------~l----~~D~dA~Y~~~i~iDLs~LeP~VA~P 353 (440)
+||+|||+|+||+.|+||.|+.|++||+..++.+.. .+ .++.+..|.+.+++||++++|.|++|
T Consensus 297 aTIaNMcPEYGAt~gfFPvD~vtl~yl~~Tgrs~~~~~~i~~yLka~~~f~~~~~~~q~p~yt~~l~l~L~~vvp~vSGP 376 (892)
T KOG0452|consen 297 ATIANMCPEYGATMGFFPVDEVTLQYLKQTGRSEEKLDIIEKYLKAVKMFRDYNDPSQDPVYTQVLELDLGTVVPSVSGP 376 (892)
T ss_pred hhhhhcCccccceeeeeccchhHHHHHHHcCCcHHHHHHHHHHHHHHhhhhhccCcccCcceeeEEEEecCceeeccCCC
Confidence 999999999999999999999999999998874311 11 25667789999999999999999999
Q ss_pred CCCCCccccccccc---------------------------------------ceeceEEEecCCCCChHHHHHHHHHHH
Q 013574 354 HSPDNRALARECKD---------------------------------------VKIDRVYIGSCTGGKTEDFLAAAKVFL 394 (440)
Q Consensus 354 ~sPdnv~~v~e~~g---------------------------------------~kId~v~IGSCTngr~eDL~~AA~vL~ 394 (440)
.+|+++++++++.. -.|-++.|.||||.+++..+.+|.+|.
T Consensus 377 KRPhDrV~v~dmk~Df~scL~~~vgFKgFai~~e~q~~~v~f~~~g~~~~l~HGsVVIAAitSCTNtsNPSVMlgAgLlA 456 (892)
T KOG0452|consen 377 KRPHDRVAVSDMKADFHSCLDSKVGFKGFAIAPEAQSKSVEFQYDGTTAKLKHGSVVIAAITSCTNTSNPSVMLGAGLLA 456 (892)
T ss_pred CCCccccchhhHHHHHHHhhcCcccccccccChhHhhceEEEEECCeeeEeccCcEEEEEEecccCCCCcHHhhhhhHHH
Confidence 99999999886631 146689999999999999999999998
Q ss_pred h----cCCcce--ecEEEECccH-HHHHHhhccccc
Q 013574 395 A----SVRAIS--IITFFRQPIE-SYKNLLHPSLNE 423 (440)
Q Consensus 395 ~----~G~kv~--Vr~~V~PaS~-V~~~~l~~G~~~ 423 (440)
+ +|++|+ +++.+.|+|. |-+.+.+.|+++
T Consensus 457 KkAv~~GL~v~PyikTSLsPGSgvVt~YL~~SGv~p 492 (892)
T KOG0452|consen 457 KKAVELGLNVKPYIKTSLSPGSGVVTKYLSESGVLP 492 (892)
T ss_pred HHHHhcCceecceeecccCCCCchhhhhhhhccchh
Confidence 5 688887 9999999999 655555677764
No 34
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=100.00 E-value=2.4e-50 Score=420.69 Aligned_cols=347 Identities=22% Similarity=0.311 Sum_probs=300.7
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecC
Q 013574 55 SERRPATTGSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDH 134 (440)
Q Consensus 55 ~~r~~~~~~~~~~~mTl~EKIla~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~G~~~~v~dp~kvv~~~DH 134 (440)
-=|.|..+...++|.|++|||+.|++|.+.++||.++..++..|.+||.||||+-+.+++ +- .-.++.+-+..+++|
T Consensus 359 ~F~~p~~p~~sgkG~TlaqKmvgrAcGv~girpGtycepkmttVGSQDTTGpMTrdElk~-lA--clgfsaD~vmQSfCH 435 (852)
T COG1049 359 VFRKPKAPAESGKGFTLAQKMVGRACGVPGIRPGTYCEPKMTTVGSQDTTGPMTRDELKD-LA--CLGFSADLVMQSFCH 435 (852)
T ss_pred hccCCCCccccCCcccHHHHHhhhccCCccccCCCcccceeeeeccccCCCCccHHHHHH-HH--hhcccchhhhhhccc
Confidence 345566666667899999999999999999999999999999999999999999999964 52 345788999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCcceeeecccCCCcccCCCCCeeeeeeecccceecCCceEEecCCCCccCCccccee
Q 013574 135 YIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFA 214 (440)
Q Consensus 135 ~vp~~~~~~~~~~~~lr~fak~~gi~~f~d~~~~~~~~~~ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GAlGala 214 (440)
..--......++|..|-+|.-..|. +... ||.||+|.|+.+ +..|..+..|+||||...=+ ++
T Consensus 436 TAaypkpvdv~th~~Lp~Fi~~rGg-----------Vslr-pgdGVIHswLNr--mllpDtvgtGGDSHTRfpiG---is 498 (852)
T COG1049 436 TAAYPKPVDVKTHHTLPDFIMNRGG-----------VSLR-PGDGVIHSWLNR--MLLPDTVGTGGDSHTRFPIG---IS 498 (852)
T ss_pred ccccCCccchhccccchHHHhhcCc-----------eecC-CCCccHHHHHHh--ccCCcceecCCccccccccc---ce
Confidence 9855566667788889988776654 3333 478999999865 89999999999999999764 88
Q ss_pred ccCCchhhhhhhccceEEeecCCceeEEEEeeCCCCccHhHHHHHHH------HHhcccc------cCceEEEEecCccc
Q 013574 215 TGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQII------GEISVAG------ATYKSMEFVGTTVE 282 (440)
Q Consensus 215 ~GvG~td~a~~l~tG~~wlkvPetv~V~L~G~L~~gV~aKDviL~li------~~l~~~G------~~gk~vEF~G~gv~ 282 (440)
|+.|+.-+|++.+||.+.|.+||+|.|+++|+|+||++-+|++.+|- |.|++++ ..|+++|.. |+.
T Consensus 499 FpAgSGlVAfAaatGvmpldmPeSVlVrFkG~mQPgitlRDlV~Aip~yaikQglltv~k~~k~NiFsGRIlEie--glp 576 (852)
T COG1049 499 FPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRILEIE--GLP 576 (852)
T ss_pred ecCCCchhhhhHhcCcccCCCCceEEEEeccccCCCcCHHHHHhhhHHHHHHhhheeccccCccceecceeEEec--cCc
Confidence 99999999999999999999999999999999999999999999873 3455442 356666665 689
Q ss_pred CCChhhhhhhhhhccccCceeeecc-CchhHHHHhhhcCC----------C-----------------CCccccCCCCCc
Q 013574 283 RLSMEERMTLCNMVVEAGGKNGVVP-ADGTTFKYLEDKTS----------L-----------------PYEPVYSDEKAS 334 (440)
Q Consensus 283 ~LS~deR~Tl~NM~~E~GAk~gif~-pD~~t~~yL~~~~~----------~-----------------~~~~l~~D~dA~ 334 (440)
+|.+|+-++|+..++|..|+.+.+- .++...+||+..-. . ...++.+|+||+
T Consensus 577 ~LkveQAFeltDasAErsaa~ctikl~~e~iiEyL~sni~l~k~MIa~Gy~d~rTL~rri~~me~wla~p~lle~D~dAe 656 (852)
T COG1049 577 DLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLKSNIVLLKWMIAEGYGDARTLERRIDKMEAWLANPELLEADADAE 656 (852)
T ss_pred ccchhhheeccchhhhhhhccceEecCchhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhcCccccCCCCCCc
Confidence 9999999999999999999999876 77888899976421 1 124578999999
Q ss_pred ccEEEEEeCCCc-ceeeecCCCCCCcccccccccceeceEEEecCCCCChHHHHHHHHHHHhcCCcceecEEEECccH-H
Q 013574 335 FLSEYRFDISKL-EPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASVRAISIITFFRQPIE-S 412 (440)
Q Consensus 335 Y~~~i~iDLs~L-eP~VA~P~sPdnv~~v~e~~g~kId~v~IGSCTngr~eDL~~AA~vL~~~G~kv~Vr~~V~PaS~-V 412 (440)
|..+|+|||+.| ||++|+|++||+++.++|+.+.+||.||||||... +.++|+|+++|++.++.++.|+||+|.++ .
T Consensus 657 YaavIeidL~~IkEPila~PNdpDd~r~lse~~~~~idevFiGSCMtn-iGh~ra~~klL~~~~~~~~~rLwvapPTkmd 735 (852)
T COG1049 657 YAAVIEIDLADIKEPILAAPNDPDDVRLLSEVAGDKIDEVFIGSCMTN-IGHFRAAGKLLENAKGELPTRLWVAPPTKMD 735 (852)
T ss_pred eeEEEEeeHHHcCCCeecCCCCchHhhHhHHhcCCccceeeeehhhcc-chhHHHHHHHHHhcccCCCcceEecCCcccc
Confidence 999999999999 99999999999999999999999999999999987 89999999999976667889999999999 9
Q ss_pred HHHHhhcccccc
Q 013574 413 YKNLLHPSLNEM 424 (440)
Q Consensus 413 ~~~~l~~G~~~~ 424 (440)
-.|+.+||+++-
T Consensus 736 ~~qL~~EG~y~i 747 (852)
T COG1049 736 AAQLTEEGYYSI 747 (852)
T ss_pred HHHHhhcchHHH
Confidence 999999999763
No 35
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-49 Score=403.88 Aligned_cols=410 Identities=27% Similarity=0.240 Sum_probs=381.8
Q ss_pred CCCcCCCCCCCCcccccccccCcccccCCcccccchhhcccccceEEEeecCCCCCCCCCCCCCCCCCCcHHHHHHHHhc
Q 013574 1 MASSVISPAPTSSFINNKKDLGSFCFSSTSQFSVNKCKKLAVSKKIVSVMAPQQSERRPATTGSVKNAMTLTEKIFSRAS 80 (440)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~mTl~EKIla~~~ 80 (440)
|++....+|+.+.+.+ +-++....++..|+-+-..|.+.++..++.++++|++ +|+|..+|+++.|||++|||+++.+
T Consensus 1 y~k~rplaPkg~~we~-avaywktl~~de~ak~dhe~~i~aidv~pt~twgtsp-qd~~pitGsvpdp~~vtd~i~a~~~ 78 (502)
T KOG0454|consen 1 YAKVRPLAPKGCKWES-AVAYWKTLFPDESAKSDHECQIKAIDVKPTSTWGTSP-QDSPPITGSVPDPMTVTDKILARAS 78 (502)
T ss_pred CCCcccCCccccchhh-hhhhhhcccCcccccceeeeeccccceeeeeeecCCc-ccCCCcCCcCCCCcccchHHHHhhh
Confidence 4555556666665554 6778888888888888888888889999999999995 4999999999999999999999999
Q ss_pred CCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCCHHHHHHHHHHHHHHHHcCcc
Q 013574 81 EKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIK 160 (440)
Q Consensus 81 ~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~G~~~~v~dp~kvv~~~DH~vp~~~~~~~~~~~~lr~fak~~gi~ 160 (440)
.+.-+.+|+..|..+|.+|+||+.++.....++++++..++||||+|+++.+||++...+....+++.++++.+|.+.+.
T Consensus 79 ersL~ymGl~pnt~v~s~~~dkVfigsctn~riedlr~aAaVv~g~Kia~n~k~am~vpgsglvkk~aeaegld~if~ea 158 (502)
T KOG0454|consen 79 ERSLVYMGLNPNTNVDSLMTDKVFIGSCTNIRIEDLREAAAVVDGEKIAVNPKHAMFVPGSGLVKKVAEAEGLDRIFNEA 158 (502)
T ss_pred hhceeeccCCCCcccceeeecceeccccccccHHHHhhhhhccccceeEecccceEEecCchhhHhHHHHHhhHHHHHhh
Confidence 99888899999999999999999999999999889998899999999999999999999999999999999999999999
Q ss_pred eeeecccCCCcccCCCCCeeeeeeecccceecCCceEEecCCCCccCCcccceeccCCchhhhhhhccceEEeecCCcee
Q 013574 161 YFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLR 240 (440)
Q Consensus 161 ~f~d~~~~~~~~~~ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GAlGala~GvG~td~a~~l~tG~~wlkvPetv~ 240 (440)
.||+..+..+|.++|...|+||...+.++..+|++...|+|||||+.++.++||.|++++++.....+|+..+++|+++.
T Consensus 159 gF~wreagcs~clgmnpd~l~~yercastsnRnfEgrqGa~srThlma~s~qfAagi~~~~~~~~~~~~k~~~~~~Ps~~ 238 (502)
T KOG0454|consen 159 GFYWREAGCSFCLGMNPDGLCHYERCASTSNRNFEGRQGADSRTHLMAASMQFAAGIGGHDLGFREFTGKDSLKVSPSPF 238 (502)
T ss_pred ceehhhccccccccCCchhccHHHHhhhccCCCccccccccccchhhhhhHHhhccccccccccccccccccccCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCCCccHhHHHHHHHHHhcccccCceEEEEecCcccCCChhhhhhhhhhccccCceeeeccCchhHHHHhhhcC
Q 013574 241 FVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKT 320 (440)
Q Consensus 241 V~L~G~L~~gV~aKDviL~li~~l~~~G~~gk~vEF~G~gv~~LS~deR~Tl~NM~~E~GAk~gif~pD~~t~~yL~~~~ 320 (440)
++++|+.++...++|+++.+++....++..++.+||.+... +|+|+.|+|||||..|-+-+.+|+|+|-.|+-|-....
T Consensus 239 l~~~g~s~sv~~~~~li~~ia~ds~t~i~~~at~e~~s~~s-Sl~m~~F~tLc~vv~dNiDTD~IIP~qfltli~~~~~~ 317 (502)
T KOG0454|consen 239 LTLKGESPSVLPAKDLIVSIATDSSTDIPRVATMEFSSTTS-SLGMETFHTLCGVVADNIDTDQIIPAQFLTLIPSTGLI 317 (502)
T ss_pred EEeCCCCccccccccchhhhhccccccccceecccCCCccc-cccCcceeeeehhhhhhCCcCcccChhhhcccccchhh
Confidence 99999999999999999999999999999999999998877 99999999999999999999999999999888877766
Q ss_pred CCCCccccCCCC-CcccEEEEEeCCCcceeeecCCCCCCcccccccccceeceEEEecCCCCChHHHHHHHHHHHhcCCc
Q 013574 321 SLPYEPVYSDEK-ASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASVRA 399 (440)
Q Consensus 321 ~~~~~~l~~D~d-A~Y~~~i~iDLs~LeP~VA~P~sPdnv~~v~e~~g~kId~v~IGSCTngr~eDL~~AA~vL~~~G~k 399 (440)
...+-+++.|.+ +.|...+.+|.+.++|....|++ ||.---++.+..||+.+++|+|+.+.-++.+++++..-+.|++
T Consensus 318 ~~~f~~~~~dg~~k~~~~dFv~~vE~~~~~siii~~-DNFGCGSSREHAPv~L~~~GakaivA~Sya~IFfrN~~atG~l 396 (502)
T KOG0454|consen 318 LSCFYEVALDGLPKSFVTDFVLPVEPLRKYSIIIGG-DNFGCGSSREHAPVCLGAAGAKAIVAPSYARIFFRNSVATGEL 396 (502)
T ss_pred hhhhhhheecCCchhhccceeccccccceeEEEecc-CCcccccccccCcchhhhcccceecchhHHHHHHHhHHhcCCc
Confidence 666777788887 89999999999999999999999 9999999999999999999999999999999999999888999
Q ss_pred ceecEEEECccH-HHH
Q 013574 400 ISIITFFRQPIE-SYK 414 (440)
Q Consensus 400 v~Vr~~V~PaS~-V~~ 414 (440)
+.+...+.|..+ ++-
T Consensus 397 ~~~~s~~~v~de~~~~ 412 (502)
T KOG0454|consen 397 PPLPSEVRVCDECVTG 412 (502)
T ss_pred cCCCceeeecccceec
Confidence 888888888887 543
No 36
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=99.15 E-value=3.3e-11 Score=124.25 Aligned_cols=108 Identities=22% Similarity=0.292 Sum_probs=93.0
Q ss_pred CccccCCCCCcccEEEEEeCCCcceeeecCCCCCCccccc-------------------------------ccccceece
Q 013574 324 YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAR-------------------------------ECKDVKIDR 372 (440)
Q Consensus 324 ~~~l~~D~dA~Y~~~i~iDLs~LeP~VA~P~sPdnv~~v~-------------------------------e~~g~kId~ 372 (440)
|.-+++|+.|.|+.+++|..-.+.|.+.+-.+|+++-|+. .+.-+++|.
T Consensus 21 wktl~~de~ak~dhe~~i~aidv~pt~twgtspqd~~pitGsvpdp~~vtd~i~a~~~ersL~ymGl~pnt~v~s~~~dk 100 (502)
T KOG0454|consen 21 WKTLFPDESAKSDHECQIKAIDVKPTSTWGTSPQDSPPITGSVPDPMTVTDKILARASERSLVYMGLNPNTNVDSLMTDK 100 (502)
T ss_pred hhcccCcccccceeeeeccccceeeeeeecCCcccCCCcCCcCCCCcccchHHHHhhhhhceeeccCCCCcccceeeecc
Confidence 5568899999999999999999999999999999876642 112258999
Q ss_pred EEEecCCCCChHHHHHHHHHHHhcCCcce--ec-EEEECccH-HHHHHhhcccccccCCceeehh
Q 013574 373 VYIGSCTGGKTEDFLAAAKVFLASVRAIS--II-TFFRQPIE-SYKNLLHPSLNEMEDNKHLYHI 433 (440)
Q Consensus 373 v~IGSCTngr~eDL~~AA~vL~~~G~kv~--Vr-~~V~PaS~-V~~~~l~~G~~~~~~~~~~~~~ 433 (440)
||||||||+|+|||+.||+|++ |.|+. ++ .+++|+|+ |-++++.+|+-++-..+-.|.+
T Consensus 101 Vfigsctn~riedlr~aAaVv~--g~Kia~n~k~am~vpgsglvkk~aeaegld~if~eagF~wr 163 (502)
T KOG0454|consen 101 VFIGSCTNIRIEDLREAAAVVD--GEKIAVNPKHAMFVPGSGLVKKVAEAEGLDRIFNEAGFYWR 163 (502)
T ss_pred eeccccccccHHHHhhhhhccc--cceeEecccceEEecCchhhHhHHHHHhhHHHHHhhceehh
Confidence 9999999999999999999999 99987 33 78899999 9999999999888777766643
No 37
>COG1679 Predicted aconitase [General function prediction only]
Probab=94.58 E-value=0.17 Score=52.97 Aligned_cols=279 Identities=15% Similarity=0.126 Sum_probs=154.3
Q ss_pred EeeeEEEecCCChHHHHHHHHH--HhCCCCcccCCc-cEEEEecCCCC---CCCHHHHHHHHHHHHHHHHcCcceeeecc
Q 013574 93 VNVDILMTHDVCGPGSFGIFKK--EFGENAKVWDRE-KIVIIPDHYIF---TSDERANRNVDILRDFCMEQNIKYFYDIK 166 (440)
Q Consensus 93 v~vD~v~~hD~tgp~~~~~~~~--e~G~~~~v~dp~-kvv~~~DH~vp---~~~~~~~~~~~~lr~fak~~gi~~f~d~~ 166 (440)
..+|-+. ..+.|+.=++.+++ ++| .+|.-|. .=...+|+.-+ .-+++..+.+..+-+.-++-|+.--|.+.
T Consensus 47 AhIsGvs-Y~tiG~AGL~Fle~lae~g--arV~VptTlNp~~~Dl~~w~~~gv~e~f~~~q~ri~~A~~~MGv~~t~TCt 123 (403)
T COG1679 47 AHISGVS-YKTIGDAGLEFLEDLAEMG--ARVSVPTTLNPAGVDLERWRELGVDEEFAEKQRRIAKAYESMGVRVTFTCT 123 (403)
T ss_pred ceeccee-ecccchhHhHHHHHHHhcC--CeEEeeeccCcceecccchhhcCCChHHhHHHHHHHHHHHHcCCceeEecc
Confidence 3455554 44445544444432 245 3554333 11134454432 23666777777888888889987655443
Q ss_pred cCCCcccCCCCCeeeeeeecccceecCCceEEecCCCCccCCcccceeccCCchhhhhhhccceEE---eecC----Cce
Q 013574 167 DLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVL---LKVP----PTL 239 (440)
Q Consensus 167 ~~~~~~~~ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GAlGala~GvG~td~a~~l~tG~~w---lkvP----etv 239 (440)
+....++|+.|=-|.| .|..-+.=-..++|+ ||+-.|++.+|+-.| +|++. +-.+ .++
T Consensus 124 --PY~~~~~p~~Gd~~AW-aESsAV~fANSVlGA--rTnReggp~aL~aAi----------~Gr~P~yG~hl~EnR~~~~ 188 (403)
T COG1679 124 --PYLLGNLPSFGDHLAW-AESSAVSFANSVLGA--RTNREGGPLALAAAI----------TGRTPLYGLHLDENRRPTV 188 (403)
T ss_pred --ccccCCCccccceeee-eccchhhhhhhhhhh--hccccCCHHHHHHHH----------hCCCccccccccccccceE
Confidence 3444456666765554 465555555788888 999999766554443 44443 1222 256
Q ss_pred eEEEEeeCCCCccHhHHHH----HHHHHhcccccCceEEEEecCcccCCChhhhhhhhhhccccCceeeeccCchhHHHH
Q 013574 240 RFVLDGEMPDYLLAKDLIL----QIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKY 315 (440)
Q Consensus 240 ~V~L~G~L~~gV~aKDviL----~li~~l~~~G~~gk~vEF~G~gv~~LS~deR~Tl~NM~~E~GAk~gif~pD~~t~~y 315 (440)
.|+++..+... |.-. +++|+.-.+|.-|- . ....=|-|++-.|+--..=.||.. ++-....|=+|
T Consensus 189 ~v~ve~~~~~~----d~~~~~lGy~~G~~~~d~IP~~----~--~~~~p~~d~lKalgAA~atsgava-m~HvegvTPE~ 257 (403)
T COG1679 189 IVEVEFPPKED----DSEYGALGYLAGEAAGDGIPYF----R--LALFPSEDELKALGAAMATSGAVA-MYHVEGVTPEA 257 (403)
T ss_pred EEEEecCCCcc----hhhhHHHHHHHHHhccCCCCee----c--cCCCCCHHHHHHHHHHHhhcCcee-EEEecCCCccc
Confidence 67777765553 4333 34444433433321 1 112234455555544333333333 22222222222
Q ss_pred hhhcCCCCCccccCCCCCcccEEEEEeCCCcceeeecCCCCCCcccccccccceeceEEEecCCCCChHHHHHHHHHHHh
Q 013574 316 LEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLA 395 (440)
Q Consensus 316 L~~~~~~~~~~l~~D~dA~Y~~~i~iDLs~LeP~VA~P~sPdnv~~v~e~~g~kId~v~IGSCTngr~eDL~~AA~vL~~ 395 (440)
- .. .-..-...++|+...+. ......+.....+|.++|| |---+++.++..|++|++
T Consensus 258 ~---------~~---~~~d~~e~i~i~~~d~~----------da~~~l~~~~~epdli~iG-cPHaS~~E~~~la~~l~~ 314 (403)
T COG1679 258 R---------AL---AFGDKAEKIEIEREDID----------DAWERLNTADGEPDLIALG-CPHASLEELRRLAELLKG 314 (403)
T ss_pred c---------cc---cccccCceeeeeHHHHH----------HHHHHhhcCCCCCCEEEeC-CCCCCHHHHHHHHHHHhc
Confidence 1 00 01111234566655542 2222233445589999998 777779999999999995
Q ss_pred cCCcceecEEEECccH-HHHHHhhcccccc
Q 013574 396 SVRAISIITFFRQPIE-SYKNLLHPSLNEM 424 (440)
Q Consensus 396 ~G~kv~Vr~~V~PaS~-V~~~~l~~G~~~~ 424 (440)
+++...++++|+ .|+ |+.++.++|+++.
T Consensus 315 r~~~~~~~~~V~-~sr~v~~~a~~~G~~~~ 343 (403)
T COG1679 315 RKRPAGVPLYVT-TSRAVYAQARKEGYLAK 343 (403)
T ss_pred cCCCCCCCEEEE-cCHHHHHHHhhhhhHHH
Confidence 544466888876 566 9999999998764
No 38
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=93.51 E-value=1.1 Score=47.47 Aligned_cols=242 Identities=14% Similarity=0.135 Sum_probs=127.1
Q ss_pred CCHHHHHHHHHHHHHHHHcCcceeeecccCCCcccCCCCCeeeeeeecccceecCCceEEecCCCCccCCcccceeccCC
Q 013574 139 SDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIG 218 (440)
Q Consensus 139 ~~~~~~~~~~~lr~fak~~gi~~f~d~~~~~~~~~~ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GAlGala~GvG 218 (440)
-+....+.++++.+.-++-|+..-|.+. +.+--++|..|=-+. ..|.+-+-=-..|+|+ .|+..|+
T Consensus 92 ~~~~~~~~q~~i~~a~~~mG~~~t~TCt--PY~~~~~P~~Ge~iA-W~ESsAV~yaNSVlGA--RTNreg~--------- 157 (400)
T PF04412_consen 92 VDEEFAEKQKRIIDAYRKMGAQPTFTCT--PYLLGNRPRFGEHIA-WSESSAVIYANSVLGA--RTNREGG--------- 157 (400)
T ss_pred CCHHHHHHHHHHHHHHHHcCCcccccCc--CccCCCCCCCCCEEE-Eecccceeeeecccch--hcCCCCc---------
Confidence 4566777788888888898986544332 111112233332222 1232222212334444 4445553
Q ss_pred chhhhhhhccceEE---eecC----CceeEEEEeeCCCCccHhHHHHHHHHHh-cccccCceEEEEecCcccCCChhhhh
Q 013574 219 NTDAGFVLGTGKVL---LKVP----PTLRFVLDGEMPDYLLAKDLILQIIGEI-SVAGATYKSMEFVGTTVERLSMEERM 290 (440)
Q Consensus 219 ~td~a~~l~tG~~w---lkvP----etv~V~L~G~L~~gV~aKDviL~li~~l-~~~G~~gk~vEF~G~gv~~LS~deR~ 290 (440)
.++++++ .||++. +-+. .++.|+++..+.. .|..-.+||-+ |.. ....+=-|.|--- ..+.|+-.
T Consensus 158 ~~al~aA-itGrtP~~G~hl~EnR~~~~~v~v~~~~~~----d~~~~~~LG~~iG~~-~~~~IPvi~g~~~-~p~~d~lK 230 (400)
T PF04412_consen 158 PSALAAA-ITGRTPYYGLHLDENRRATILVEVEAPPEE----DDADWGLLGYLIGKK-VGDRIPVITGLER-RPSEDDLK 230 (400)
T ss_pred HHHHHHH-HhCCCCcccccCccCCCCeEEEEeCCCCCc----CcchHHHHHHHHHHh-cCCCcCeEeCCCC-CCCHHHHH
Confidence 3344433 366554 2222 2678888888765 33333444442 211 1112223333211 35555554
Q ss_pred hhhhhccccCceeeeccCchhHHHHhhhcCCCCCccccCCCCCcccEEEEEeCCCcceeeecCCCCCCccccccccccee
Q 013574 291 TLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKI 370 (440)
Q Consensus 291 Tl~NM~~E~GAk~gif~pD~~t~~yL~~~~~~~~~~l~~D~dA~Y~~~i~iDLs~LeP~VA~P~sPdnv~~v~e~~g~kI 370 (440)
.+|=-..=.|+.. +|=.... +.+. +.+...-+.. .++++|+.++|+-....=. .-.+-++
T Consensus 231 ~lgAA~Atsgs~~-m~Hi~Gv--------TPEa-~~~~~a~~~~-~e~i~i~~~dl~~~~~~l~---------~~~~~~~ 290 (400)
T PF04412_consen 231 ALGAAMATSGSVA-MFHIVGV--------TPEA-PTLEAAFGGK-AERITITDADLEEVYEELN---------TAGDEKV 290 (400)
T ss_pred HHhhhhhccccee-eEEEeCC--------CCCC-CcchhhhcCC-ceEEEeCHHHHHHHHHHhc---------cCCCCCC
Confidence 4443333333322 2211111 1111 1111111111 5789999888865443221 2244699
Q ss_pred ceEEEecCCCCChHHHHHHHHHHHhcCCcc--eecEEEECccHHHHHHhhcccccc
Q 013574 371 DRVYIGSCTGGKTEDFLAAAKVFLASVRAI--SIITFFRQPIESYKNLLHPSLNEM 424 (440)
Q Consensus 371 d~v~IGSCTngr~eDL~~AA~vL~~~G~kv--~Vr~~V~PaS~V~~~~l~~G~~~~ 424 (440)
|.|+|| |=--+++.|+..|++|+ |||+ .++++|+=+..|+.++.+.|+.+.
T Consensus 291 D~V~lG-cPH~S~~El~~ia~ll~--gr~~~~~~~~~i~t~~~v~~~a~~~G~~~~ 343 (400)
T PF04412_consen 291 DLVALG-CPHLSLEELREIAELLE--GRKVHPNVPLWITTSRAVYELAERMGYVER 343 (400)
T ss_pred CEEEEC-CCCCCHHHHHHHHHHHh--CCCCCCCceEEEECCHHHHHHHHhCCHHHH
Confidence 999998 77788999999999999 6664 488888755449999999998763
No 39
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=44.14 E-value=7.4 Score=34.42 Aligned_cols=35 Identities=29% Similarity=0.252 Sum_probs=28.8
Q ss_pred eEEEecCCCCChHHHHHHHHHHHhcCCcce---------ecEEEECcc
Q 013574 372 RVYIGSCTGGKTEDFLAAAKVFLASVRAIS---------IITFFRQPI 410 (440)
Q Consensus 372 ~v~IGSCTngr~eDL~~AA~vL~~~G~kv~---------Vr~~V~PaS 410 (440)
-=|.||||=- +||+.||.|+. +.||. ..++++||.
T Consensus 19 L~YeGSitID--~~Ll~aagi~~--~E~V~I~Nv~NG~Rf~TYvI~g~ 62 (111)
T cd06919 19 LNYEGSITID--EDLLEAAGILP--YEKVLVVNVNNGARFETYVIPGE 62 (111)
T ss_pred cccceeEEEC--HHHHHhcCCCC--CCEEEEEECCCCcEEEEEEEEcC
Confidence 3489999987 79999999999 88874 457888775
No 40
>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=43.71 E-value=2.9e+02 Score=29.56 Aligned_cols=278 Identities=15% Similarity=0.118 Sum_probs=135.2
Q ss_pred EEEeeeEEEecCCChHHHHHHHHH--HhCCCCcccCCccE-EEEecCC--CCCCCHHHHHHHHHHHHHHHHcCcceeeec
Q 013574 91 VWVNVDILMTHDVCGPGSFGIFKK--EFGENAKVWDREKI-VIIPDHY--IFTSDERANRNVDILRDFCMEQNIKYFYDI 165 (440)
Q Consensus 91 v~v~vD~v~~hD~tgp~~~~~~~~--e~G~~~~v~dp~kv-v~~~DH~--vp~~~~~~~~~~~~lr~fak~~gi~~f~d~ 165 (440)
-...+|-+. +-+.|+.-++.+++ +.| .+|.-|..+ ...+|+. -..-++...+.+..+.+.-++-|+.--|.+
T Consensus 35 ~~ahisGvs-y~tiG~agl~f~e~l~~~g--akv~VpTTlNp~~~D~~w~~~gvd~~f~~~q~~i~~ay~~mG~~~t~TC 111 (389)
T cd01355 35 KSAHISGVS-YKTIGDAGLEFLERLADQG--AKVAVPTTLNPISMDLHWRELGVDEEFAEKQARLVKAYKAMGVDPTFTC 111 (389)
T ss_pred cceEEccee-ecccchhhHHHHHHHHhCC--CeEeecCccCCcccCcchhhcCCCHHHHHHHHHHHHHHHHcCCcccccc
Confidence 344566554 23556555555544 345 344222211 1234543 123456677788888889999998765544
Q ss_pred ccCCCcccCCCCCeeeeeeecccceecCCceEEecCCCCccCCcccceeccCCchhhhhhhccceEE--------eecCC
Q 013574 166 KDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVL--------LKVPP 237 (440)
Q Consensus 166 ~~~~~~~~~ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GAlGala~GvG~td~a~~l~tG~~w--------lkvPe 237 (440)
. +...-++|..|=-+-| .|.+-+-=-..|+|+ .|+..|++. ++++++ ||++. =|.|.
T Consensus 112 t--PY~~~~~P~~Ge~iAW-aESnAV~yANSVlGA--RTnregg~~---------aLaaAi-tGr~P~~GlhldEnR~~~ 176 (389)
T cd01355 112 T--PYQLENLPKKGEHIAW-AESSAVVYANSVLGA--RTNREGGPS---------ALAAAI-TGRTPEYGVHLDENRKAR 176 (389)
T ss_pred c--CccCCCCCCCCCeeeE-ecccceeeeeccccc--cccCCCCHH---------HHHHHH-hCCCCccccccccCcCCe
Confidence 3 1211123444433332 343333222556666 667777544 444443 55544 23444
Q ss_pred ceeEEEEeeCCCCccHhHHHHHHHHHh-cccccCceEEEEecCcccCCChhhhhhhhhhccccCceeeeccCchhHHHHh
Q 013574 238 TLRFVLDGEMPDYLLAKDLILQIIGEI-SVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYL 316 (440)
Q Consensus 238 tv~V~L~G~L~~gV~aKDviL~li~~l-~~~G~~gk~vEF~G~gv~~LS~deR~Tl~NM~~E~GAk~gif~pD~~t~~yL 316 (440)
+.|+++..+.. .|.---+||-+ |.. ....+=-|.|-. ...+.|+.-.||=-..=.|+..- |=....|
T Consensus 177 -~~v~v~~~~~~----d~~~~~~LG~~iG~~-~~~~IP~i~gl~-~~p~~d~LKalgAA~Atsgs~am-~Hi~gvT---- 244 (389)
T cd01355 177 -LIVEVEAAEPL----DDSDYGALGYLVGKI-AGDRIPVITGLD-ARPSEDELKALGAAMATSGSVAM-FHIVGVT---- 244 (389)
T ss_pred -EEEEeccCCCc----cccchhHHHHhhccc-cCCCCCeeecCC-CCCCHHHHHHHhHHHhhccccee-EEEeCCC----
Confidence 44877743321 44444444332 100 111111233322 12455555555544444443332 2111110
Q ss_pred hhcCCCCCccccCCCCCcccEEEEEeCCCcceeeecCCCCCCcccccccccceeceEEEecCCCCChHHHHHHHHHHHhc
Q 013574 317 EDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLAS 396 (440)
Q Consensus 317 ~~~~~~~~~~l~~D~dA~Y~~~i~iDLs~LeP~VA~P~sPdnv~~v~e~~g~kId~v~IGSCTngr~eDL~~AA~vL~~~ 396 (440)
.+ ++.. ...-.+.++|+-++|+-....= +. .+.++|.|+|| |==-+++-|+.-|++|+
T Consensus 245 ----PE-~~~~----~~~~~e~i~i~~~dl~~~~~~~---------~~-~~~~~dlv~lG-cPH~Sl~E~~~la~ll~-- 302 (389)
T cd01355 245 ----PE-APTL----GLDAAETVELTRADLDEARENL---------NA-DGSEPDLVVLG-CPHASLEELRKLADLLA-- 302 (389)
T ss_pred ----CC-Cccc----CCCcceEEEecHHHHHHHHHhh---------cC-cccCCCEEEec-CCCCCHHHHHHHHHHhc--
Confidence 00 1111 1122246777755553221110 11 11269999995 77778999999999999
Q ss_pred CCcce--ecEEEECccH-HHHHHhhccccc
Q 013574 397 VRAIS--IITFFRQPIE-SYKNLLHPSLNE 423 (440)
Q Consensus 397 G~kv~--Vr~~V~PaS~-V~~~~l~~G~~~ 423 (440)
|++++ ++++|+ .|| |+ +-+.|+.+
T Consensus 303 g~~~~~~~~~~v~-t~r~v~--a~~~g~~~ 329 (389)
T cd01355 303 GRRVAPSVPLYVT-TSRAVY--AKRMGYVD 329 (389)
T ss_pred CCccCCCCCEEEE-ccHHHH--HhhccHHH
Confidence 87664 787776 455 66 55556543
No 41
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=40.73 E-value=11 Score=33.94 Aligned_cols=35 Identities=29% Similarity=0.322 Sum_probs=28.3
Q ss_pred eEEEecCCCCChHHHHHHHHHHHhcCCcce---------ecEEEECcc
Q 013574 372 RVYIGSCTGGKTEDFLAAAKVFLASVRAIS---------IITFFRQPI 410 (440)
Q Consensus 372 ~v~IGSCTngr~eDL~~AA~vL~~~G~kv~---------Vr~~V~PaS 410 (440)
-=|.||||=- +||+.||.||. +.||. ..++++||-
T Consensus 19 L~Y~GSitID--~dlldaagile--~EkV~I~N~nNGaRf~TYvI~g~ 62 (126)
T COG0853 19 LNYVGSITID--EDLLDAAGILE--NEKVDIVNVNNGARFSTYVIAGE 62 (126)
T ss_pred cceEEeEEEC--HHHHhhcCCCC--CceEEEEECCCCcEEEEEEEEcc
Confidence 4499999987 89999999999 77774 457777764
No 42
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=39.46 E-value=9.8 Score=34.39 Aligned_cols=35 Identities=29% Similarity=0.256 Sum_probs=28.6
Q ss_pred eEEEecCCCCChHHHHHHHHHHHhcCCcce---------ecEEEECcc
Q 013574 372 RVYIGSCTGGKTEDFLAAAKVFLASVRAIS---------IITFFRQPI 410 (440)
Q Consensus 372 ~v~IGSCTngr~eDL~~AA~vL~~~G~kv~---------Vr~~V~PaS 410 (440)
-=|.||||=- +||+.||.||. +.+|. ..++++||.
T Consensus 20 L~Y~GSitID--~~Ll~aagi~p--~E~V~V~Nv~NG~Rf~TYvI~g~ 63 (126)
T PRK05449 20 LNYEGSITID--EDLLDAAGILE--NEKVQIVNVNNGARFETYVIAGE 63 (126)
T ss_pred cccceeEEEC--HHHHHhcCCCC--CCEEEEEECCCCcEEEEEEEEcC
Confidence 3489999987 79999999999 88874 457888775
No 43
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=38.48 E-value=10 Score=34.24 Aligned_cols=35 Identities=29% Similarity=0.250 Sum_probs=28.8
Q ss_pred eEEEecCCCCChHHHHHHHHHHHhcCCcce---------ecEEEECcc
Q 013574 372 RVYIGSCTGGKTEDFLAAAKVFLASVRAIS---------IITFFRQPI 410 (440)
Q Consensus 372 ~v~IGSCTngr~eDL~~AA~vL~~~G~kv~---------Vr~~V~PaS 410 (440)
-=|.||||=- +||+.||.||. +.+|. ..++++||-
T Consensus 20 L~Y~GSItID--~~Lm~aagi~p--~E~V~V~Nv~NG~Rf~TYvI~G~ 63 (126)
T TIGR00223 20 LNYEGSITID--EDLLDAAGILE--NEKVDIVNVNNGKRFSTYAIAGK 63 (126)
T ss_pred cccceeEEEC--HHHHHhcCCCC--CCEEEEEECCCCcEEEEEEEEcC
Confidence 3489999987 79999999999 88874 457888775
No 44
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=35.25 E-value=5e+02 Score=27.76 Aligned_cols=139 Identities=10% Similarity=0.025 Sum_probs=83.2
Q ss_pred eEEEEecCcccCCChhhhhhhhhhccccCceeeec---cCchhHHHHhhhcCCCCCccccCCCCCcccEEEEEeCCCcce
Q 013574 272 KSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVV---PADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEP 348 (440)
Q Consensus 272 k~vEF~G~gv~~LS~deR~Tl~NM~~E~GAk~gif---~pD~~t~~yL~~~~~~~~~~l~~D~dA~Y~~~i~iDLs~LeP 348 (440)
+.+-|.++..- ...+.=..||..-.+.|-.-... ..|+++++.|++.+- ..+.+=+.+..+
T Consensus 247 ~~i~f~Dd~f~-~~~~~~~~l~~~l~~~~i~~~~~~~~~~~~e~l~~l~~aG~---------------~~v~iGiES~s~ 310 (472)
T TIGR03471 247 REFFFDDDTFT-DDKPRAEEIARKLGPLGVTWSCNARANVDYETLKVMKENGL---------------RLLLVGYESGDQ 310 (472)
T ss_pred cEEEEeCCCCC-CCHHHHHHHHHHHhhcCceEEEEecCCCCHHHHHHHHHcCC---------------CEEEEcCCCCCH
Confidence 55667665331 22222245666656655432221 247777777776541 234454444433
Q ss_pred e----eecCCCCCCccc----ccccccceeceEEEecCCCCChHHHHHHHHHHHhcCCc-ceec-EEEECccHHHHHHhh
Q 013574 349 L----VAKPHSPDNRAL----ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASVRA-ISII-TFFRQPIESYKNLLH 418 (440)
Q Consensus 349 ~----VA~P~sPdnv~~----v~e~~g~kId~v~IGSCTngr~eDL~~AA~vL~~~G~k-v~Vr-~~V~PaS~V~~~~l~ 418 (440)
- +-+++++++... +++ .|+.+..-||=.--+-..||++.-.+.+++.+.. +.+. +...|+|..|+++.+
T Consensus 311 ~~L~~~~K~~~~~~~~~~i~~~~~-~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~~~~~~l~P~PGT~l~~~~~~ 389 (472)
T TIGR03471 311 QILKNIKKGLTVEIARRFTRDCHK-LGIKVHGTFILGLPGETRETIRKTIDFAKELNPHTIQVSLAAPYPGTELYDQAKQ 389 (472)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHH-CCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCceeeeecccCCCcHHHHHHHH
Confidence 2 334555544322 223 3678888888788888899999999998854322 2222 344899999999999
Q ss_pred cccccccCC
Q 013574 419 PSLNEMEDN 427 (440)
Q Consensus 419 ~G~~~~~~~ 427 (440)
+|++..++.
T Consensus 390 ~g~~~~~~~ 398 (472)
T TIGR03471 390 NGWITQDSA 398 (472)
T ss_pred CCCcCCchh
Confidence 999887654
No 45
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=35.11 E-value=4.8e+02 Score=26.55 Aligned_cols=64 Identities=16% Similarity=0.241 Sum_probs=37.7
Q ss_pred cHhHHHHHHHHHhcccccCceEEEEecCcccCCChhhhhhhhhhccccCceeeecc----CchhHHHHhhhc
Q 013574 252 LAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVP----ADGTTFKYLEDK 319 (440)
Q Consensus 252 ~aKDviL~li~~l~~~G~~gk~vEF~G~gv~~LS~deR~Tl~NM~~E~GAk~gif~----pD~~t~~yL~~~ 319 (440)
...|.+..++.++..-|. ..|.|+| | |-|--.+=..|...+-+.|-...+.. -++++.++|.+.
T Consensus 37 l~~e~~~~ii~~~~~~g~--~~v~~~G-G-EPll~~~~~~ii~~~~~~g~~~~l~TNG~ll~~e~~~~L~~~ 104 (358)
T TIGR02109 37 LTTEEWTDVLTQAAELGV--LQLHFSG-G-EPLARPDLVELVAHARRLGLYTNLITSGVGLTEARLDALADA 104 (358)
T ss_pred CCHHHHHHHHHHHHhcCC--cEEEEeC-c-cccccccHHHHHHHHHHcCCeEEEEeCCccCCHHHHHHHHhC
Confidence 456778888888765443 4577876 3 33333444556666667776555432 355666666654
No 46
>PRK15447 putative protease; Provisional
Probab=29.66 E-value=69 Score=32.47 Aligned_cols=57 Identities=21% Similarity=0.409 Sum_probs=40.4
Q ss_pred ccccceeceEEEec--CC---CCChHHHHHHHHHHHhcCCccee--cEEE-ECccH-HHHHHhhcc
Q 013574 364 ECKDVKIDRVYIGS--CT---GGKTEDFLAAAKVFLASVRAISI--ITFF-RQPIE-SYKNLLHPS 420 (440)
Q Consensus 364 e~~g~kId~v~IGS--CT---ngr~eDL~~AA~vL~~~G~kv~V--r~~V-~PaS~-V~~~~l~~G 420 (440)
.++...+|.||+|- |. |=+.+||..+.+.++++|+||-| +.++ .+.-. -+.++++.|
T Consensus 23 ~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~ 88 (301)
T PRK15447 23 RAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENG 88 (301)
T ss_pred HHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcC
Confidence 34445699999992 22 46789999999999999999874 4443 35544 666677764
No 47
>PRK15452 putative protease; Provisional
Probab=29.14 E-value=64 Score=34.83 Aligned_cols=50 Identities=14% Similarity=0.105 Sum_probs=37.2
Q ss_pred eeceEEEec--------CCCCChHHHHHHHHHHHhcCCcceecEEEECccH---HHHHHhh
Q 013574 369 KIDRVYIGS--------CTGGKTEDFLAAAKVFLASVRAISIITFFRQPIE---SYKNLLH 418 (440)
Q Consensus 369 kId~v~IGS--------CTngr~eDL~~AA~vL~~~G~kv~Vr~~V~PaS~---V~~~~l~ 418 (440)
..|.||+|. +.|-+.|||..+.+..+.+|+|+-|.+-..|-.. -+.++++
T Consensus 23 GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~ 83 (443)
T PRK15452 23 GADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLE 83 (443)
T ss_pred CCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHH
Confidence 589999976 5677889999999999988988876555555544 3444444
No 48
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=28.73 E-value=3.6e+02 Score=29.51 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=34.0
Q ss_pred EEEEEeCCCcceeeecCCCCCCcccccccccceeceEEEecCCCCCh
Q 013574 337 SEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKT 383 (440)
Q Consensus 337 ~~i~iDLs~LeP~VA~P~sPdnv~~v~e~~g~kId~v~IGSCTngr~ 383 (440)
.-+.||...+-|.|..-.-|...-.+.-+...-|-.+=|||+..||.
T Consensus 346 H~v~vda~~~lph~~~~~~p~~al~~~ly~~~GiR~~e~g~~~~~~~ 392 (460)
T PRK13237 346 HAVFLDARRFLPHLPQDQFPAQALAAELYIESGVRSMERGIVSAGRD 392 (460)
T ss_pred eEEEEEhHHhCCCCCcccChHHHHHHHHHHHhCcCeEeecceecccC
Confidence 67889999999988665556555444444445677788999988874
No 49
>PRK00124 hypothetical protein; Validated
Probab=25.50 E-value=1.6e+02 Score=27.46 Aligned_cols=111 Identities=17% Similarity=0.258 Sum_probs=61.3
Q ss_pred HHHHHHHHHcCcceeeecccCCCcccCCCCCeeeeeeecc---------cceecCCceEEecCCCCccCCcccceeccCC
Q 013574 148 DILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQ---------EGHCRPGEVLLGTDSHTCTAGAFGQFATGIG 218 (440)
Q Consensus 148 ~~lr~fak~~gi~~f~d~~~~~~~~~~ppg~GI~Hqvl~e---------eg~~~PG~~ivGtDSHT~t~GAlGala~GvG 218 (440)
+++.+.|++++++-++ +.+.+-+--.|+...|-..++.. -.++.|||+||..|- |
T Consensus 14 ~~i~r~a~r~~i~v~~-Vas~n~~~~~~~~~~v~~v~V~~g~D~AD~~Iv~~~~~gDiVIT~Di---------------~ 77 (151)
T PRK00124 14 DIIIRVAERHGIPVTL-VASFNHFLRVPYSPFIRTVYVDAGFDAADNEIVQLAEKGDIVITQDY---------------G 77 (151)
T ss_pred HHHHHHHHHHCCeEEE-EEeCCcccCCCCCCceEEEEeCCCCChHHHHHHHhCCCCCEEEeCCH---------------H
Confidence 4577889999988754 11111111134444554443321 147899999999982 1
Q ss_pred chhhhhhhccceEEeecCCceeEEEEeeCCCCccHhHHHHH------HHHHhcccccCceEEEEecCcccCCChhhhhhh
Q 013574 219 NTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQ------IIGEISVAGATYKSMEFVGTTVERLSMEERMTL 292 (440)
Q Consensus 219 ~td~a~~l~tG~~wlkvPetv~V~L~G~L~~gV~aKDviL~------li~~l~~~G~~gk~vEF~G~gv~~LS~deR~Tl 292 (440)
-++.+|..|-.-+ . ++..++-.+=|=. +..+++..|... .|-..++-++|..+
T Consensus 78 --LAa~~l~Kga~vl--------~----prG~~yt~~nI~~~L~~R~~~~~lR~~G~~t-------~Gp~~~~~~Dr~~F 136 (151)
T PRK00124 78 --LAALALEKGAIVL--------N----PRGYIYTNDNIDQLLAMRDLMATLRRSGIRT-------GGPKPFTQEDRSRF 136 (151)
T ss_pred --HHHHHHHCCCEEE--------C----CCCcCCCHHHHHHHHHHHHHHHHHHHcCCCC-------CCCCCCCHHHHHHH
Confidence 1233444443322 2 2233444443333 345677666532 26789999999888
Q ss_pred hhh
Q 013574 293 CNM 295 (440)
Q Consensus 293 ~NM 295 (440)
.|-
T Consensus 137 ~~~ 139 (151)
T PRK00124 137 EAE 139 (151)
T ss_pred HHH
Confidence 764
No 50
>PF02261 Asp_decarbox: Aspartate decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase. The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process; PDB: 1PYU_C 1AW8_A 1PYQ_B 3TM7_C 1PT1_A 1PQH_A 1PPY_B 1PT0_B 1PQF_A 1PQE_A ....
Probab=22.17 E-value=13 Score=33.07 Aligned_cols=34 Identities=29% Similarity=0.328 Sum_probs=25.0
Q ss_pred EEecCCCCChHHHHHHHHHHHhcCCcce---------ecEEEECccH
Q 013574 374 YIGSCTGGKTEDFLAAAKVFLASVRAIS---------IITFFRQPIE 411 (440)
Q Consensus 374 ~IGSCTngr~eDL~~AA~vL~~~G~kv~---------Vr~~V~PaS~ 411 (440)
|.||||=. +||+.||.|+. +.+|. ..++++||-+
T Consensus 22 Y~GSitID--~~Ll~aagi~p--~E~V~V~Nv~nG~Rf~TYvI~g~~ 64 (116)
T PF02261_consen 22 YEGSITID--EDLLDAAGILP--YEQVQVVNVNNGERFETYVIPGER 64 (116)
T ss_dssp STSCEEEE--HHHHHHCT--T--TBEEEEEETTT--EEEEEEEEEST
T ss_pred cceeeEEC--HHHHHHcCCCc--CCEEEEEECCCCcEEEEEEEEccC
Confidence 67999987 79999999999 77774 4577777643
No 51
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.12 E-value=1.4e+02 Score=24.91 Aligned_cols=37 Identities=11% Similarity=0.231 Sum_probs=28.2
Q ss_pred cccCCccEEEEecCCCCCCCHHHHHHHHHHHHHHHHcCcceeee
Q 013574 121 KVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYD 164 (440)
Q Consensus 121 ~v~dp~kvv~~~DH~vp~~~~~~~~~~~~lr~fak~~gi~~f~d 164 (440)
.+.++|-|++..|.. ++...+.+++.||++|++.+|-
T Consensus 45 ~i~~aD~VIv~t~~v-------sH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 45 KIKKADLVIVFTDYV-------SHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred hcCCCCEEEEEeCCc-------ChHHHHHHHHHHHHcCCcEEEE
Confidence 466788888888865 3445567889999999998763
No 52
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=22.08 E-value=1.2e+02 Score=31.02 Aligned_cols=53 Identities=8% Similarity=-0.001 Sum_probs=36.1
Q ss_pred CCChHHHHHHHHHHHhcCCcce--ecEEEECccH-HHHHHhhcccccccCCceeeh
Q 013574 380 GGKTEDFLAAAKVFLASVRAIS--IITFFRQPIE-SYKNLLHPSLNEMEDNKHLYH 432 (440)
Q Consensus 380 ngr~eDL~~AA~vL~~~G~kv~--Vr~~V~PaS~-V~~~~l~~G~~~~~~~~~~~~ 432 (440)
.-|++|...-.+-|+++|.|+- |.=.|.+.+. .|+++.+.|++-...+...|.
T Consensus 67 ~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~~~~~~~y~~~~~~g~~vk~~~g~~~~ 122 (317)
T cd06594 67 PERYPGLDELIEELKARGIRVLTYINPYLADDGPLYYEEAKDAGYLVKDADGSPYL 122 (317)
T ss_pred hhhCCCHHHHHHHHHHCCCEEEEEecCceecCCchhHHHHHHCCeEEECCCCCeee
Confidence 3478999988888887776654 3333344456 589999999877655444443
No 53
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=21.63 E-value=9.1 Score=40.53 Aligned_cols=56 Identities=27% Similarity=0.335 Sum_probs=45.7
Q ss_pred ecCCceEEecCCCCccCCcccceeccCCchhhhhhhccceEEeecCCceeEEEEeeCC
Q 013574 191 CRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMP 248 (440)
Q Consensus 191 ~~PG~~ivGtDSHT~t~GAlGala~GvG~td~a~~l~tG~~wlkvPetv~V~L~G~L~ 248 (440)
.+|..++|-+|-+||-+||+-||-.-+--.-+++.+.|+..+ +||-+.=+++|.+-
T Consensus 91 ~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlRt~~~~--~PEE~NR~l~~~~S 146 (383)
T COG0381 91 EKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLRTGDLY--FPEEINRRLTSHLS 146 (383)
T ss_pred hCCCEEEEeCCcchHHHHHHHHHHhCCceEEEecccccCCCC--CcHHHHHHHHHHhh
Confidence 479999999999999999999997666556778889999888 99976655555543
No 54
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=21.35 E-value=1.3e+02 Score=30.11 Aligned_cols=52 Identities=8% Similarity=0.034 Sum_probs=34.3
Q ss_pred CChHHHHHHHHHHHhcCCcce--ecEEEECccHHHHHHhhcccccccCCceeeh
Q 013574 381 GKTEDFLAAAKVFLASVRAIS--IITFFRQPIESYKNLLHPSLNEMEDNKHLYH 432 (440)
Q Consensus 381 gr~eDL~~AA~vL~~~G~kv~--Vr~~V~PaS~V~~~~l~~G~~~~~~~~~~~~ 432 (440)
.|++|...-.+-|+++|.|+- +.-.|.+.|..|+++.+.|++=...+...|+
T Consensus 63 ~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g~~v~~~~g~~~~ 116 (308)
T cd06593 63 DRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKGYLVKKPDGSVWQ 116 (308)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCCeEEECCCCCeee
Confidence 488899888888887776653 2222344456999999999765444433443
No 55
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=21.11 E-value=1.3e+02 Score=27.61 Aligned_cols=34 Identities=15% Similarity=0.402 Sum_probs=24.5
Q ss_pred ccEEEEecCCCCCCCHHHHHHHHHHHHHHHHcCccee
Q 013574 126 EKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYF 162 (440)
Q Consensus 126 ~kvv~~~DH~vp~~~~~~~~~~~~lr~fak~~gi~~f 162 (440)
+-.++++||.....+ .+..+.++++|+++||+++
T Consensus 29 ~~~~~~vdh~~~~~s---~~~~~~v~~~~~~~~i~~~ 62 (182)
T PF01171_consen 29 KLIAVHVDHGLREES---DEEAEFVEEICEQLGIPLY 62 (182)
T ss_dssp EEEEEEEE-STSCCH---HHHHHHHHHHHHHTT-EEE
T ss_pred CeEEEEEecCCCccc---chhHHHHHHHHHhcCCceE
Confidence 678999999987432 3345678899999999876
No 56
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=20.36 E-value=55 Score=36.24 Aligned_cols=79 Identities=24% Similarity=0.338 Sum_probs=49.0
Q ss_pred cceecCCceEEecCCCCccCCcccceeccCCchhhhhhhccceEEeecCCceeEEEEeeCCCCccHhHHHHHHHHHhccc
Q 013574 188 EGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVA 267 (440)
Q Consensus 188 eg~~~PG~~ivGtDSHT~t~GAlGala~GvG~td~a~~l~tG~~wlkvPetv~V~L~G~L~~gV~aKDviL~li~~l~~~ 267 (440)
.++++|||+|+ +|.=|+-+|++- +.+.-|.+=+. -+.=|.+=+.+|..++. .+-++|
T Consensus 373 ~~fl~p~dvii-aetGtS~FG~~~-~~lP~~~~~i~-Q~lWGSIG~t~pAalGa--------~~A~~d------------ 429 (557)
T COG3961 373 QNFLKPGDVII-AETGTSFFGALD-IRLPKGATFIS-QPLWGSIGYTLPAALGA--------ALAAPD------------ 429 (557)
T ss_pred HhhCCCCCEEE-Ecccccccccee-eecCCCCeEEc-ccchhhcccccHhhhhh--------hhcCCC------------
Confidence 47999999877 577787777643 44444433221 11122222444444332 233333
Q ss_pred ccCceEEEEecCcccCCChhhhhhh
Q 013574 268 GATYKSMEFVGTTVERLSMEERMTL 292 (440)
Q Consensus 268 G~~gk~vEF~G~gv~~LS~deR~Tl 292 (440)
-+.|-|.|+|--+|++.|.-|+
T Consensus 430 ---rR~IL~iGDGs~QlTvQEiStm 451 (557)
T COG3961 430 ---RRVILFIGDGSLQLTVQEISTM 451 (557)
T ss_pred ---ccEEEEEcCchhhhhHHHHHHH
Confidence 6799999999999999998775
Done!