RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 013574
(440 letters)
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric
acid cycle, heat- like domain, lyase; HET: TRA; 2.40A
{Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Length = 865
Score = 260 bits (665), Expect = 1e-78
Identities = 67/375 (17%), Positives = 113/375 (30%), Gaps = 60/375 (16%)
Query: 57 RRPATTGSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEF 116
R+ +L +K+ RA + PG + + + D GP + K
Sbjct: 370 RQAKDVAESDRGFSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPMTRDELKDL- 428
Query: 117 GENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPD 176
+ + ++ H L DF M +
Sbjct: 429 --ACLGFSADLVMQSFCHTAAYPKPVDVNTHHTLPDFIMNRGGVSLRP------------ 474
Query: 177 YKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVP 236
GV H L P V G DSHT + G+ F TG + L +P
Sbjct: 475 GDGVIHSWL--NRMLLPDTVGTGGDSHTRFPIGI---SFPAGSGLVAFAAATGVMPLDMP 529
Query: 237 PTLRFVLDGEMPDYLLAKDLILQIIGEISVAGAT----------YKSMEFVGTTVERLSM 286
++ G+M + +DL+ I G + + L +
Sbjct: 530 ESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEIEGLPDLKV 589
Query: 287 EERMTLCNMVVEAGGKNGVVPADG-TTFKYLEDKTSL----------------------- 322
E+ L + E + + +YL L
Sbjct: 590 EQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGME 649
Query: 323 ----PYEPVYSDEKASFLSEYRFDISKL-EPLVAKPHSPDNRALARECKDVKIDRVYIGS 377
E + +D A + + D++ + EP++ P+ PD+ + KID V+IGS
Sbjct: 650 KWLANPELLEADADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQGEKIDEVFIGS 709
Query: 378 CTGGKTEDFLAAAKV 392
C F AA K+
Sbjct: 710 CMTNI-GHFRAAGKL 723
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle,
iron-sulfur, mitochondrion, transit peptide, 4Fe-4S,
3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1
c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A*
5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A*
1nis_A* 1nit_A
Length = 753
Score = 159 bits (404), Expect = 9e-43
Identities = 68/231 (29%), Positives = 99/231 (42%), Gaps = 19/231 (8%)
Query: 179 GVCH-IALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPP 237
G+ H I L E + PG +L+GTDSHT G G G+G DA V+ LK P
Sbjct: 143 GIIHQIIL--ENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPK 200
Query: 238 TLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVV 297
+ L G + + KD+IL++ G ++V G T +E+ G V+ +S T+CNM
Sbjct: 201 VIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGA 260
Query: 298 EAGGKNGVVPADGTTFKYL--------EDKTSLPYEPVYSDEKASFLSEYRFDISKLEPL 349
E G V P + KYL + + + D + ++S+L+P
Sbjct: 261 EIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDPGCHYDQVIEINLSELKPH 320
Query: 350 VAKPHSPDNRALARECKDV--------KIDRVYIGSCTGGKTEDFLAAAKV 392
+ P +PD E V I IGSCT ED +A V
Sbjct: 321 INGPFTPDLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAV 371
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase
activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1
c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Length = 888
Score = 66.4 bits (163), Expect = 7e-12
Identities = 51/226 (22%), Positives = 88/226 (38%), Gaps = 48/226 (21%)
Query: 170 NFKANPDYKGVCH---------IALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNT 220
N + P G+ H + Q+G+ P + L+GTDSHT G G+G
Sbjct: 165 NMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYP-DSLVGTDSHTTMIDGLGILGWGVGGI 223
Query: 221 DAGFV-LGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLIL---QIIGEISVAGATYKSMEF 276
+A V LG + + +P + + L G+ + + D++L + + ++ V G K +EF
Sbjct: 224 EAEAVMLGQ-PISMVLPQVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVG---KFVEF 279
Query: 277 VGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLE------------------- 317
G V +LS+ +R T+ NM E G P D + YL
Sbjct: 280 FGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYLVQTGRDEEKLKYIKKYLQAV 339
Query: 318 ----DKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNR 359
D +P ++ D+ + P + P P ++
Sbjct: 340 GMFRDFNDPSQDPDFTQ-------VVELDLKTVVPCCSGPKRPQDK 378
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 1e-04
Identities = 72/481 (14%), Positives = 131/481 (27%), Gaps = 155/481 (32%)
Query: 6 ISPA-PTSSFINNKKDLGSFCFSSTSQFS---VNKCKKLAVSKKIVSVMAPQQSERRPAT 61
P+ T +I + L ++ F+ V++ + ++ + E RPA
Sbjct: 103 RQPSMMTRMYIEQRDRL----YNDNQVFAKYNVSRLQPYLKLRQALL-------ELRPAK 151
Query: 62 -------TGSVKNAMTLTEKIFSRASEKPQLSPGDNV-WVNV-------DIL-------- 98
GS K + L S K Q + W+N+ +L
Sbjct: 152 NVLIDGVLGSGKTWVALD----VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 99 -MTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQ 157
+ + K + + R + + +L + +
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRR----------LLKSKPYENCLLVLLNVQNAK 257
Query: 158 NIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGT-DSHTCTAGAFGQFATG 216
F +L C+ +LL T
Sbjct: 258 AWNAF----NLS---------------------CK---ILLTTRFK-------------- 275
Query: 217 IGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDY---LLAK-------DLILQIIG---- 262
TD T + +L PD LL K DL +++
Sbjct: 276 -QVTDFLSAATTTHI------SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 263 EISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSL 322
+S+ + + T + L ++E+ + PA+ K + +
Sbjct: 329 RLSIIAESIRDGL---ATWDNWKHVNCDKL-TTIIESSLNV-LEPAE--YRKMFDRLSVF 381
Query: 323 PYEPVYSDEK--ASFLSEYRFDISKLEP--LVAKPHSPDNRALARECKDVKIDRVYIGSC 378
P LS FD+ K + +V K H +L K K + I
Sbjct: 382 PP-----SAHIPTILLSLIWFDVIKSDVMVVVNKLH---KYSLVE--KQPKESTISI--- 428
Query: 379 TGGKTEDFLAAAKVFLASVRAI--SIITFFRQPIESYKNLLHPSLNEMEDN---KHL-YH 432
KV L + A+ SI+ + P + L P D H+ +H
Sbjct: 429 -----PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP---PYLDQYFYSHIGHH 480
Query: 433 I 433
+
Sbjct: 481 L 481
Score = 37.5 bits (86), Expect = 0.009
Identities = 67/411 (16%), Positives = 119/411 (28%), Gaps = 152/411 (36%)
Query: 134 HYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDY-KGVCHIALAQEGHCR 192
H F + E + DIL F E +D KD+ D K + L++E
Sbjct: 6 HMDFETGEHQYQYKDILSVF--EDAFVDNFDCKDV------QDMPKSI----LSKE---- 49
Query: 193 PGEVLLGTDSHTCTAGAFGQFATGIGNTDAG--FVLGTGKVLLKVPPTL--RFVLDGEMP 248
E+ + +G + T LL + +FV +
Sbjct: 50 --EI---------------DHIIMSKDAVSGTLRLFWT---LLSKQEEMVQKFVEEVLRI 89
Query: 249 DY--LLA------KDLILQIIGEISVAGATYKSME-FVGTTVERLSMEERMTLC------ 293
+Y L++ + + I Y + F V RL ++
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 294 --NMVVE--AG-GK------------------NGV----VPADGTTFKYLEDKTSLPY-- 324
N++++ G GK + + + LE L Y
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 325 EPVYSDEKASFLSEYRFDISKLEP-----LVAKPHSPDNRALA--RECKDVKIDRVYIGS 377
+P ++ ++ S + I ++ L +KP+ L ++ K + S
Sbjct: 210 DPNWT-SRSDHSSNIKLRIHSIQAELRRLLKSKPY---ENCLLVLLNVQNAKAWNAFNLS 265
Query: 378 C-----TGGKT-EDFLAAAKV-------------------FLASV--------------- 397
C T K DFL+AA L
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 398 --RAISII-TFFRQPIESYKNLLHP-----------SLNEME--DNKHLYH 432
R +SII R + ++ N H SLN +E + + ++
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Score = 34.1 bits (77), Expect = 0.12
Identities = 29/190 (15%), Positives = 59/190 (31%), Gaps = 33/190 (17%)
Query: 27 SSTSQFSVNKCKKLAVSKK-----IVSVMAPQQSERRPATTGSVKNAMTLTEKIFSRASE 81
S VNK K ++ +K +S+ + + + + + +
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 82 KPQLSP--GDNVWVNVDILMTH-DVCGPG-SFGIFKK-----EFGENAKV------WDRE 126
L P D + + + H +F+ F E K+ W+
Sbjct: 461 SDDLIPPYLDQYFYS--HIGHHLKNIEHPERMTLFRMVFLDFRFLE-QKIRHDSTAWNAS 517
Query: 127 KIVI--IPD-----HYIFTSDERANRNVDILRDFCM--EQNIKYFYDIKDLGNFKANPDY 177
++ + YI +D + R V+ + DF E+N+ DL +
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL-ICSKYTDLLRIALMAED 576
Query: 178 KGVCHIALAQ 187
+ + A Q
Sbjct: 577 EAIFEEAHKQ 586
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.6 bits (86), Expect = 0.002
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 12/34 (35%)
Query: 331 EKASFLSEYRFDISKLEP-LVAKPHSPDNR-ALA 362
EK + + KL+ L K ++ D+ ALA
Sbjct: 18 EKQA--------LKKLQASL--KLYADDSAPALA 41
Score = 28.0 bits (61), Expect = 3.6
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 8/35 (22%)
Query: 35 NKCKKLAVSKKIVSVMAPQQSERRPATTGSVKNAM 69
KKL S K+ A + PA ++K M
Sbjct: 20 QALKKLQASLKL---YAD---DSAPAL--AIKATM 46
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain,
cell projection, cytoplasm, nucleus, phosphoprotein,
translation regulation; 2.75A {Homo sapiens}
Length = 163
Score = 32.0 bits (73), Expect = 0.20
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 6/100 (6%)
Query: 45 KIVSVMAPQQSERRPATTGSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVC 104
KI P R TG + +I+ + E+ P + V + I +
Sbjct: 37 KIAPPETPDSKVRMVIITGPPEAQFKAQGRIYGKLKEENFFGPKEEVKLETHIRVPASAA 96
Query: 105 GP--GSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDER 142
G G G E ++V+ D +D+
Sbjct: 97 GRVIGKGGKTVNELQNLTAA----EVVVPRDQTPDENDQV 132
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A
{Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A*
1s8a_A 1s89_A
Length = 152
Score = 30.6 bits (69), Expect = 0.52
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 13/94 (13%)
Query: 308 ADGTTFKYLEDKTSLPYEPVYS------DEKASFLSEYRFD--ISKLEPLVAKPHSPDNR 359
A GTT + T + + S + + +SE + D I +PL A PH PD +
Sbjct: 44 ATGTTGNLISRATGMNVNAMLSGPMGGDQQVGALISEGKIDVLIFFWDPLNAVPHDPDVK 103
Query: 360 ALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVF 393
AL R I T T DF+ + F
Sbjct: 104 ALLRLA-----TVWNIPVATNVATADFIIQSPHF 132
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.74
Identities = 62/396 (15%), Positives = 116/396 (29%), Gaps = 132/396 (33%)
Query: 58 RPAT--TGSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKE 115
RP T GS+++ + + F AS QL +++
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIAS---QL---------------------------QEQ 36
Query: 116 FGENAKVWDREKIVIIPDHYI-FTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKAN 174
F I+P+ F +D+ +++ F + Y + L
Sbjct: 37 F-----------NKILPEPTEGFAADDEPTTPAELVGKF-----LGY---VSSLVEPSKV 77
Query: 175 PDYKGVCHIALAQ-EGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNT--------DAGFV 225
+ V ++ L + E L G D H A + T + T A +
Sbjct: 78 GQFDQVLNLCLTEFEN-----CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIM 132
Query: 226 LGTGKVLLKVPPT--LRFVLDGEMP------------DYLLAKDLILQIIGEISVAGATY 271
+ K + R V +G DY ++ L+ + + TY
Sbjct: 133 --AKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF--EE--LRDLYQ------TY 180
Query: 272 KSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDE 331
VG ++ + TL ++ V ++LE+ ++ P +
Sbjct: 181 HV--LVGDLIKFSA----ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI 234
Query: 332 KASF-------LSEYRFDISKLEPLVAKPH--SPDNRALARECKDVKIDRVYIGSCTGGK 382
S L+ Y + AK +P R Y+ T G
Sbjct: 235 PISCPLIGVIQLAHYV--------VTAKLLGFTPGEL------------RSYLKGAT-GH 273
Query: 383 TEDFLAAAKVFLASVRAISIITFFRQPIESYKNLLH 418
++ + A +A S +FF ++ L
Sbjct: 274 SQGLVTAV--AIAE--TDSWESFFVSVRKAITVLFF 305
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'-
phosphate, calcium binding site, structural genomics,
PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP:
c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Length = 347
Score = 30.3 bits (69), Expect = 1.2
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 190 HCRPG-EVLLGTDSHTCT--AGAFGQFA 214
H + G EV+L DSH GA +
Sbjct: 73 HTQRGDEVILEADSHIFWYEVGAMAVLS 100
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P
structure initiative, PSI, joint center for structural
GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Length = 178
Score = 29.5 bits (66), Expect = 1.6
Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 22/131 (16%)
Query: 308 ADGTTFKYLEDKTSLPYEPVYS------DEKASFLSEYRFD--ISKLEPLVAKPHSPDNR 359
A GTT L++K L + S + + ++E + D I +PL + H D +
Sbjct: 60 ATGTTGALLQEKLGLKVHRLKSGPLGGDQQIGAMIAEGKIDVLIFFWDPLEPQAHDVDVK 119
Query: 360 ALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASVRAISIITFFRQPIESYKNLLHP 419
AL R I T DFL ++ + + + Y+ L
Sbjct: 120 ALIRIA-----TVYNIPVAITRSTADFLISSPLMNDV---------YEKIQIDYEEELER 165
Query: 420 SLNEMEDNKHL 430
+ ++ + +
Sbjct: 166 RIRKVVEGEEE 176
>3ugn_A Tumor necrosis factor ligand superfamily member 1; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc; HET: NAG; 2.59A {Homo
sapiens} PDB: 4en0_A*
Length = 167
Score = 28.9 bits (64), Expect = 2.2
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 2/32 (6%)
Query: 84 QLSPGDNVWVNVDILMTHDVCGPGS--FGIFK 113
L G+ V V V + FG F
Sbjct: 135 HLEAGEEVVVRVLDERLVRLRDGTRSYFGAFM 166
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A
1wo8_A
Length = 134
Score = 28.6 bits (64), Expect = 2.2
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 308 ADGTTFKYLEDKTSLPYEPVYS------DEKASFLSEYRFD--ISKLEPLVAKPHSPDNR 359
A GTT + +E+ T L E + S + + ++E R I +PL A+PH PD +
Sbjct: 36 ATGTTGRRIEEATGLTVEKLLSGPLGGDQQMGARVAEGRILAVIFFRDPLTAQPHEPDVQ 95
Query: 360 ALAREC 365
AL R C
Sbjct: 96 ALLRVC 101
>2rjl_A TNF superfamily ligand TL1A; TNFSF, cytokine, mutant, membrane,
transmembrane; 2.05A {Homo sapiens} PDB: 3k51_A 3mi8_A
2rjk_A 2qe3_A 2o0o_A 2re9_A
Length = 184
Score = 28.7 bits (63), Expect = 2.7
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 84 QLSPGDNVWVNVDILMTHDVCGPGS--FGIFK 113
L GD + VNV + D FG F
Sbjct: 152 SLQEGDKLMVNVSDISLVDYTKEDKTFFGAFL 183
>2tnf_A Protein (tumor necrosis factor alpha); lymphokine, cytokine,
cytotoxin, transmembrane, glycoprotein, signal-anchor;
1.40A {Mus musculus} SCOP: b.22.1.1 PDB: 1a8m_A 1tnf_A
2tun_A 3l9j_T 2az5_A* 3it8_A* 3alq_A 4tsv_A 5tsw_A
2e7a_A 2zpx_A 2zjc_A
Length = 156
Score = 27.8 bits (61), Expect = 4.7
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 84 QLSPGDNVWVNVDILMTHDVCGPGS--FGIFK 113
QL GD + V++ D G FG+
Sbjct: 124 QLEKGDQLSAEVNLPKYLDFAESGQVYFGVIA 155
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural
genomics, PSI, protein struct initiative; 1.80A
{Archaeoglobus fulgidus} SCOP: c.87.1.8
Length = 177
Score = 27.1 bits (61), Expect = 8.4
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 353 PHSPDNRALARECKDVKIDRV-YIGSCTGGKTEDFLAAAKVFL 394
AR+ + D V ++GS + + D + K L
Sbjct: 60 SKGDHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSRCKGLL 102
>3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics,
PSI-2, protein structure initiative; 1.99A {Bacillus
licheniformis} PDB: 3lm6_A
Length = 347
Score = 27.7 bits (62), Expect = 9.1
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 249 DYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPA 308
D LA DL+ Q + + A + + F+ + E + + + +++ G + A
Sbjct: 78 DIFLAGDLLNQNVT--ANYVARHLKIPFLCLFGACSTSMESIAISSALIDGGFAKRALAA 135
Query: 309 DGTTFKYLEDKTSLPYE 325
+ E + P E
Sbjct: 136 TSSHNATAERQFRYPTE 152
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.400
Gapped
Lambda K H
0.267 0.0562 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,834,115
Number of extensions: 427833
Number of successful extensions: 930
Number of sequences better than 10.0: 1
Number of HSP's gapped: 919
Number of HSP's successfully gapped: 21
Length of query: 440
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 344
Effective length of database: 4,021,377
Effective search space: 1383353688
Effective search space used: 1383353688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.9 bits)