RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 013574
(440 letters)
>d1l5ja3 c.83.1.1 (A:373-862) Aconitase B, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 490
Score = 224 bits (573), Expect = 5e-69
Identities = 64/364 (17%), Positives = 107/364 (29%), Gaps = 60/364 (16%)
Query: 69 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKI 128
+L +K+ RA + PG + + + D GP + K + + +
Sbjct: 10 FSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPMTRDELKDL---ACLGFSADLV 66
Query: 129 VIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQE 188
+ H L DF M + GV H L
Sbjct: 67 MQSFCHTAAYPKPVDVNTHHTLPDFIMNRGGVSLRP------------GDGVIHSWL--N 112
Query: 189 GHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMP 248
P V G DSHT G+ F TG + L +P ++ G+M
Sbjct: 113 RMLLPDTVGTGGDSHTRFPIGIS---FPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQ 169
Query: 249 DYLLAKDLILQIIGEISVAGAT----------YKSMEFVGTTVERLSMEERMTLCNMVVE 298
+ +DL+ I G + + L +E+ L + E
Sbjct: 170 PGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEIEGLPDLKVEQAFELTDASAE 229
Query: 299 AGGKNGVVPA-DGTTFKYLEDKTSLPY---------------------------EPVYSD 330
+ +YL L E + +D
Sbjct: 230 RSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEAD 289
Query: 331 EKASFLSEYRFDISKLEPL-VAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAA 389
A + + D++ ++ + P+ PD+ + KID V+IGSC F AA
Sbjct: 290 ADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQGEKIDEVFIGSCM-TNIGHFRAA 348
Query: 390 AKVF 393
K+
Sbjct: 349 GKLL 352
>d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow (Bos
taurus) [TaxId: 9913]}
Length = 527
Score = 171 bits (435), Expect = 1e-48
Identities = 83/345 (24%), Positives = 128/345 (37%), Gaps = 27/345 (7%)
Query: 69 MTLTEKIFSR----ASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWD 124
+TL+EKI + + + + D + D + F KV
Sbjct: 35 LTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFIS--SGLPKVAV 92
Query: 125 REKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIA 184
I DH I +++ +D E G P + I
Sbjct: 93 PSTIHC--DHLIEA-QLGGEKDLRRAKDINQEVYNFLATAGAKYGVGFWRPGSGIIHQII 149
Query: 185 LAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLD 244
L E + PG +L+GTDSHT G G G+G DA V+ LK P + L
Sbjct: 150 L--ENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLT 207
Query: 245 GEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNG 304
G + + KD+IL++ G ++V G T +E+ G V+ +S T+CNM E G
Sbjct: 208 GSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTS 267
Query: 305 VVPADGTTFKYLE--------DKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSP 356
V P + KYL + + + D + ++S+L+P + P +P
Sbjct: 268 VFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDSGCHYDQLIEINLSELKPHINGPFTP 327
Query: 357 DNR--------ALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVF 393
D +E + I IGSCT ED +A V
Sbjct: 328 DLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVA 372
>d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein
1, N-terminal domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 629
Score = 158 bits (400), Expect = 3e-43
Identities = 59/348 (16%), Positives = 107/348 (30%), Gaps = 69/348 (19%)
Query: 113 KKEFGENAKVWDREKIVIIPDHYI----FTSDERANRNVDI--------LRDFCMEQNIK 160
KK G+ K+ ++ DH I + +N D+
Sbjct: 104 KKLGGDPEKINPVCPADLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKWGSQAF 163
Query: 161 YFYDIKDLGNFKANPDYKG-VCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGN 219
+ I G+ + + + Q+G+ + L+GTDSHT G G+G
Sbjct: 164 HNMRIIPPGSGIIHQVNLEYLARVVFDQDGYY-YPDSLVGTDSHTTMIDGLGILGWGVGG 222
Query: 220 TDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGT 279
+A V+ + + +P + + L G+ + + D++L I + G K +EF G
Sbjct: 223 IEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGP 282
Query: 280 TVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYL----------------EDKTSLP 323
V +LS+ +R T+ NM E G P D + YL +
Sbjct: 283 GVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYLVQTGRDEEKLKYIKKYLQAVGMF 342
Query: 324 YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAREC------------------ 365
+ + F D+ + P + P P ++ +
Sbjct: 343 RDFNDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQ 402
Query: 366 ---------------------KDVKIDRVYIGSCTGGKTEDFLAAAKV 392
+ I SCT + A +
Sbjct: 403 VAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGL 450
>d1ly2a1 g.18.1.1 (A:0-66) Complement receptor 2, cr2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 67
Score = 25.0 bits (54), Expect = 4.3
Identities = 5/19 (26%), Positives = 6/19 (31%)
Query: 190 HCRPGEVLLGTDSHTCTAG 208
C L+G S C
Sbjct: 31 SCSGTFRLIGEKSLLCITK 49
>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 288
Score = 27.2 bits (59), Expect = 4.5
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 324 YEPVYSDEKASFLSEYRFD 342
+ P+Y+ +SF Y FD
Sbjct: 270 FSPIYTGNISSFQQCYIFD 288
>d1i7da_ e.10.1.1 (A:) DNA topoisomerase III {Escherichia coli
[TaxId: 562]}
Length = 620
Score = 26.9 bits (58), Expect = 5.5
Identities = 3/41 (7%), Positives = 15/41 (36%)
Query: 112 FKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRD 152
+ W+ + I+P+ + + +++++
Sbjct: 50 QPDAYDSRYARWNLADLPIVPEKWQLQPRPSVTKQLNVIKR 90
>d3d31a1 b.40.6.3 (A:230-348) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 119
Score = 25.8 bits (56), Expect = 6.0
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 65 VKNAMTLTEKIFSRASEKPQLSPGDNVWVNVD 96
V + L I R++E+ +LSPG ++
Sbjct: 80 VDCGVPLNVLITRRSAEEMELSPGVQIYARFK 111
>d2raqa1 d.58.61.1 (A:3-95) Uncharacterized protein MTH889
{Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 93
Score = 24.6 bits (54), Expect = 9.1
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 350 VAKPHSPDNRALARECKDVK-IDRVYI 375
+ KPH P A+ +++ ++ V I
Sbjct: 11 ILKPHEPIIPEYAKYLSELRGVEGVNI 37
>d3bpda1 d.58.61.1 (A:1-91) Uncharacterized protein AF1549
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 91
Score = 24.6 bits (54), Expect = 9.7
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 350 VAKPHSPDNRALARECKDVK-IDRVYI 375
V KPH P A + +++ +D V I
Sbjct: 11 VLKPHEPKTIVFALKLSELENVDGVNI 37
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.400
Gapped
Lambda K H
0.267 0.0519 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,662,361
Number of extensions: 79739
Number of successful extensions: 245
Number of sequences better than 10.0: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 14
Length of query: 440
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 352
Effective length of database: 1,199,356
Effective search space: 422173312
Effective search space used: 422173312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.1 bits)