BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013575
(440 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HPA|A Chain A, Structural Origins Of L(+)-Tartrate Inhibition Of Human
Prostatic Acid Phosphatase
pdb|2HPA|B Chain B, Structural Origins Of L(+)-Tartrate Inhibition Of Human
Prostatic Acid Phosphatase
pdb|2HPA|C Chain C, Structural Origins Of L(+)-Tartrate Inhibition Of Human
Prostatic Acid Phosphatase
pdb|2HPA|D Chain D, Structural Origins Of L(+)-Tartrate Inhibition Of Human
Prostatic Acid Phosphatase
pdb|1CVI|A Chain A, Crystal Structure Of Human Prostatic Acid Phosphatase
pdb|1CVI|B Chain B, Crystal Structure Of Human Prostatic Acid Phosphatase
pdb|1CVI|C Chain C, Crystal Structure Of Human Prostatic Acid Phosphatase
pdb|1CVI|D Chain D, Crystal Structure Of Human Prostatic Acid Phosphatase
Length = 342
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 12/72 (16%)
Query: 169 AQLQELQKE--KSD----RLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQS 222
+ QEL+ E KS+ RLH +F++T+ L G+ G D F ++V+ L
Sbjct: 130 PRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDPL------YC 183
Query: 223 KSISNDTLARLA 234
+S+ N TL A
Sbjct: 184 ESVHNFTLPSWA 195
>pdb|1ND5|A Chain A, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND5|B Chain B, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND5|C Chain C, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND5|D Chain D, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND6|A Chain A, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND6|B Chain B, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND6|C Chain C, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND6|D Chain D, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
Length = 354
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 12/72 (16%)
Query: 169 AQLQELQKE--KSD----RLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQS 222
+ QEL+ E KS+ RLH +F++T+ L G+ G D F ++V+ L
Sbjct: 130 PRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDPL------YC 183
Query: 223 KSISNDTLARLA 234
+S+ N TL A
Sbjct: 184 ESVHNFTLPSWA 195
>pdb|3CUQ|A Chain A, Integrated Structural And Functional Model Of The Human
Escrt-Ii Complex
Length = 234
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 162 KKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMD 202
K+LD ++ L+E + + K EF D+C +G+D
Sbjct: 14 KQLDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVD 54
>pdb|2ZME|A Chain A, Integrated Structural And Functional Model Of The Human
Escrt-Ii Complex
Length = 258
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 162 KKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMD 202
K+LD ++ L+E + + K EF D+C +G+D
Sbjct: 38 KQLDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVD 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,760,520
Number of Sequences: 62578
Number of extensions: 447907
Number of successful extensions: 1285
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1279
Number of HSP's gapped (non-prelim): 17
length of query: 440
length of database: 14,973,337
effective HSP length: 102
effective length of query: 338
effective length of database: 8,590,381
effective search space: 2903548778
effective search space used: 2903548778
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)