Query 013575
Match_columns 440
No_of_seqs 156 out of 496
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 05:14:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013575.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013575hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4302 Microtubule-associated 100.0 9.5E-64 2.1E-68 519.3 47.6 395 1-405 1-397 (660)
2 PF03999 MAP65_ASE1: Microtubu 100.0 5.3E-51 1.2E-55 436.9 4.5 347 38-406 3-367 (619)
3 KOG4302 Microtubule-associated 100.0 1.5E-25 3.1E-30 234.3 31.2 325 77-436 23-354 (660)
4 PF03999 MAP65_ASE1: Microtubu 99.9 1.1E-22 2.3E-27 218.7 5.7 302 15-339 34-362 (619)
5 KOG4674 Uncharacterized conser 93.5 23 0.00049 43.0 34.4 258 99-401 514-778 (1822)
6 KOG0933 Structural maintenance 92.4 23 0.0005 40.1 29.1 87 297-391 905-1020(1174)
7 KOG0250 DNA repair protein RAD 91.0 21 0.00045 40.9 19.1 25 297-321 449-473 (1074)
8 PF13514 AAA_27: AAA domain 90.5 42 0.00092 39.4 22.7 88 53-144 686-776 (1111)
9 KOG0996 Structural maintenance 89.1 49 0.0011 38.3 23.5 101 227-337 934-1036(1293)
10 KOG4674 Uncharacterized conser 89.0 64 0.0014 39.4 34.5 263 19-335 544-820 (1822)
11 TIGR03185 DNA_S_dndD DNA sulfu 87.8 48 0.001 36.5 28.5 39 299-337 481-519 (650)
12 PF00038 Filament: Intermediat 87.3 32 0.00069 33.9 27.9 83 102-200 52-134 (312)
13 TIGR00634 recN DNA repair prot 86.9 31 0.00068 37.2 16.9 123 52-202 264-394 (563)
14 TIGR03185 DNA_S_dndD DNA sulfu 85.8 60 0.0013 35.7 31.4 207 100-341 205-419 (650)
15 KOG0161 Myosin class II heavy 84.5 1.1E+02 0.0025 37.8 29.2 157 106-274 1191-1347(1930)
16 PHA02562 46 endonuclease subun 84.2 25 0.00055 37.6 14.7 17 229-245 387-403 (562)
17 PF12128 DUF3584: Protein of u 83.5 1.1E+02 0.0023 36.6 31.1 45 156-200 765-812 (1201)
18 PF10239 DUF2465: Protein of u 83.3 46 0.001 33.2 14.8 82 71-184 129-210 (318)
19 PRK11637 AmiB activator; Provi 82.7 64 0.0014 33.5 19.9 87 101-189 44-130 (428)
20 KOG0964 Structural maintenance 82.1 99 0.0022 35.3 27.8 91 301-404 905-999 (1200)
21 KOG0995 Centromere-associated 81.6 79 0.0017 33.8 21.9 67 66-137 233-306 (581)
22 PHA02562 46 endonuclease subun 79.9 90 0.0019 33.4 26.3 96 36-137 151-246 (562)
23 PRK04778 septation ring format 79.6 97 0.0021 33.6 28.8 64 18-84 64-128 (569)
24 KOG0933 Structural maintenance 79.2 1.3E+02 0.0027 34.6 25.9 203 159-403 738-941 (1174)
25 KOG0977 Nuclear envelope prote 77.1 1.1E+02 0.0024 32.8 27.8 172 63-258 58-231 (546)
26 PRK11637 AmiB activator; Provi 75.7 1.1E+02 0.0023 31.9 19.3 32 109-140 45-76 (428)
27 PRK10869 recombination and rep 75.2 1.3E+02 0.0027 32.6 20.5 193 102-336 162-364 (553)
28 PF10498 IFT57: Intra-flagella 74.9 91 0.002 31.7 14.1 34 52-85 218-251 (359)
29 PF08317 Spc7: Spc7 kinetochor 74.2 99 0.0021 30.9 22.9 90 54-143 68-163 (325)
30 KOG0161 Myosin class II heavy 73.1 2.5E+02 0.0054 35.0 26.8 35 53-87 1054-1088(1930)
31 TIGR03007 pepcterm_ChnLen poly 72.1 1.4E+02 0.003 31.6 23.3 145 54-200 204-348 (498)
32 PF12128 DUF3584: Protein of u 70.3 2.4E+02 0.0052 33.7 30.4 45 222-266 765-812 (1201)
33 PF06160 EzrA: Septation ring 69.8 1.7E+02 0.0036 31.7 23.8 66 17-85 59-125 (560)
34 PRK02224 chromosome segregatio 66.7 2.4E+02 0.0051 32.2 30.9 21 364-384 484-504 (880)
35 PF11629 Mst1_SARAH: C termina 65.2 10 0.00022 26.7 3.4 25 365-389 22-47 (49)
36 KOG1029 Endocytic adaptor prot 65.0 2.4E+02 0.0051 31.6 21.1 71 59-137 435-505 (1118)
37 TIGR00606 rad50 rad50. This fa 64.3 3.2E+02 0.007 32.9 32.5 68 64-137 795-862 (1311)
38 PF12302 DUF3629: Protein of u 63.5 50 0.0011 30.0 8.3 85 326-414 49-134 (253)
39 PF07106 TBPIP: Tat binding pr 63.4 77 0.0017 28.3 9.9 44 156-199 66-109 (169)
40 PF15066 CAGE1: Cancer-associa 62.9 2E+02 0.0044 30.1 14.5 133 40-194 363-503 (527)
41 PF11995 DUF3490: Domain of un 62.0 1.2E+02 0.0025 27.0 12.4 123 251-380 2-146 (161)
42 COG5185 HEC1 Protein involved 61.0 2.2E+02 0.0048 29.9 20.8 43 297-339 532-577 (622)
43 COG4026 Uncharacterized protei 60.9 1.5E+02 0.0032 27.9 11.4 44 99-142 130-173 (290)
44 PF11995 DUF3490: Domain of un 60.3 6.2 0.00013 34.8 2.0 25 323-347 3-27 (161)
45 PF12325 TMF_TATA_bd: TATA ele 58.9 1.1E+02 0.0024 25.9 10.9 83 41-136 25-107 (120)
46 smart00787 Spc7 Spc7 kinetocho 58.2 2E+02 0.0044 28.6 22.6 90 54-143 63-158 (312)
47 PF10146 zf-C4H2: Zinc finger- 57.8 1.7E+02 0.0038 27.7 16.3 102 52-202 6-108 (230)
48 TIGR02169 SMC_prok_A chromosom 57.4 3.7E+02 0.008 31.4 27.7 36 163-198 799-834 (1164)
49 KOG3091 Nuclear pore complex, 57.0 2.5E+02 0.0054 29.7 13.1 90 47-144 355-447 (508)
50 COG3883 Uncharacterized protei 57.0 82 0.0018 30.5 9.2 84 101-193 28-111 (265)
51 TIGR02169 SMC_prok_A chromosom 54.8 4.1E+02 0.0088 31.1 33.1 31 163-193 806-836 (1164)
52 COG1340 Uncharacterized archae 52.9 2.4E+02 0.0052 27.8 24.5 83 101-183 59-152 (294)
53 KOG4360 Uncharacterized coiled 51.6 3.3E+02 0.0071 29.0 15.2 80 234-335 225-304 (596)
54 PF08317 Spc7: Spc7 kinetochor 50.6 2.7E+02 0.0058 27.8 20.1 39 161-199 208-246 (325)
55 PF10498 IFT57: Intra-flagella 50.2 2.7E+02 0.0057 28.4 12.1 83 49-142 229-311 (359)
56 cd09234 V_HD-PTP_like Protein- 49.7 2.8E+02 0.0061 27.7 28.2 111 77-193 109-219 (337)
57 PF10168 Nup88: Nuclear pore c 49.0 4.3E+02 0.0093 29.6 25.3 38 221-258 678-715 (717)
58 PF14643 DUF4455: Domain of un 48.7 3.5E+02 0.0076 28.5 23.9 48 292-339 236-283 (473)
59 PF05911 DUF869: Plant protein 48.3 2.7E+02 0.0059 31.4 12.7 157 251-420 150-325 (769)
60 COG0497 RecN ATPase involved i 47.8 3.9E+02 0.0086 28.9 13.7 123 52-202 260-390 (557)
61 KOG0018 Structural maintenance 47.7 5.1E+02 0.011 30.2 22.0 22 318-339 882-903 (1141)
62 PF02403 Seryl_tRNA_N: Seryl-t 47.6 85 0.0019 25.6 6.9 76 55-142 30-105 (108)
63 COG1579 Zn-ribbon protein, pos 47.6 2.6E+02 0.0056 26.7 18.9 117 20-143 9-128 (239)
64 PF08606 Prp19: Prp19/Pso4-lik 46.6 1.3E+02 0.0028 23.0 7.0 57 15-71 5-67 (70)
65 KOG0250 DNA repair protein RAD 46.3 5.4E+02 0.012 30.0 20.7 14 326-339 533-546 (1074)
66 cd09235 V_Alix Middle V-domain 45.6 3.3E+02 0.0071 27.3 28.0 131 53-191 75-217 (339)
67 TIGR02833 spore_III_AB stage I 44.5 1.6E+02 0.0035 26.4 8.7 96 175-285 20-120 (170)
68 PRK08307 stage III sporulation 44.4 1.6E+02 0.0034 26.6 8.6 96 175-285 21-121 (171)
69 PF08614 ATG16: Autophagy prot 44.2 62 0.0013 29.7 6.1 86 99-200 69-154 (194)
70 PF06260 DUF1024: Protein of u 44.0 1.2E+02 0.0026 23.6 6.5 57 352-412 15-71 (82)
71 PF13514 AAA_27: AAA domain 42.6 6.4E+02 0.014 29.8 28.3 186 54-258 296-482 (1111)
72 PF03915 AIP3: Actin interacti 42.0 1.9E+02 0.0041 30.1 9.8 41 362-402 253-295 (424)
73 KOG1666 V-SNARE [Intracellular 41.8 1.2E+02 0.0026 28.4 7.3 69 48-119 19-87 (220)
74 KOG0996 Structural maintenance 41.8 6.6E+02 0.014 29.7 23.0 46 302-347 1121-1169(1293)
75 PF14712 Snapin_Pallidin: Snap 41.5 1.7E+02 0.0038 23.0 10.5 85 46-137 6-90 (92)
76 TIGR03007 pepcterm_ChnLen poly 40.8 4.6E+02 0.0099 27.6 26.0 143 101-261 201-343 (498)
77 PRK09039 hypothetical protein; 39.9 4.1E+02 0.0088 26.8 17.9 141 59-261 44-184 (343)
78 PRK04863 mukB cell division pr 39.2 8.1E+02 0.018 30.1 28.0 20 367-386 639-658 (1486)
79 PF04849 HAP1_N: HAP1 N-termin 38.9 4E+02 0.0087 26.4 22.3 146 161-334 159-304 (306)
80 PF10186 Atg14: UV radiation r 38.6 3.6E+02 0.0079 25.8 14.0 40 103-142 69-108 (302)
81 PF10146 zf-C4H2: Zinc finger- 38.5 3.5E+02 0.0077 25.7 13.8 63 105-194 2-64 (230)
82 TIGR00606 rad50 rad50. This fa 38.5 7.9E+02 0.017 29.7 34.7 39 229-267 341-379 (1311)
83 COG4026 Uncharacterized protei 38.2 3.5E+02 0.0076 25.5 11.2 45 227-271 169-213 (290)
84 PF05557 MAD: Mitotic checkpoi 37.6 5.3E+02 0.012 28.8 13.3 36 159-194 500-535 (722)
85 PF15070 GOLGA2L5: Putative go 37.5 5.9E+02 0.013 28.0 25.7 116 54-191 36-151 (617)
86 PF10212 TTKRSYEDQ: Predicted 35.6 5.6E+02 0.012 27.4 12.0 73 105-189 442-514 (518)
87 KOG0612 Rho-associated, coiled 35.5 8.3E+02 0.018 29.1 22.6 226 45-335 449-674 (1317)
88 PF14357 DUF4404: Domain of un 35.1 2.3E+02 0.0049 22.4 7.6 32 170-201 54-85 (85)
89 cd09236 V_AnPalA_UmRIM20_like 32.7 5.3E+02 0.011 26.0 30.1 277 30-334 54-351 (353)
90 smart00806 AIP3 Actin interact 32.7 5.9E+02 0.013 26.5 24.1 145 225-401 149-298 (426)
91 PF10168 Nup88: Nuclear pore c 32.7 7.5E+02 0.016 27.7 20.3 80 106-190 634-713 (717)
92 COG2433 Uncharacterized conser 32.7 2.4E+02 0.0053 30.6 8.8 92 99-196 417-508 (652)
93 smart00787 Spc7 Spc7 kinetocho 32.3 5.2E+02 0.011 25.7 20.8 21 222-242 265-285 (312)
94 PF10212 TTKRSYEDQ: Predicted 32.2 6.6E+02 0.014 26.9 12.1 73 47-131 442-514 (518)
95 PRK02224 chromosome segregatio 31.4 8.2E+02 0.018 27.8 35.2 30 364-393 700-729 (880)
96 PF10234 Cluap1: Clusterin-ass 31.1 5.1E+02 0.011 25.2 10.6 34 297-331 224-257 (267)
97 PF10458 Val_tRNA-synt_C: Valy 30.9 2.2E+02 0.0048 21.1 6.5 31 60-90 3-33 (66)
98 KOG4643 Uncharacterized coiled 30.9 9.1E+02 0.02 28.1 27.3 81 51-137 261-341 (1195)
99 PF08172 CASP_C: CASP C termin 29.8 5.1E+02 0.011 24.9 12.1 92 107-198 2-122 (248)
100 PRK05431 seryl-tRNA synthetase 29.3 1.8E+02 0.004 30.2 7.4 80 55-146 29-108 (425)
101 KOG4398 Predicted coiled-coil 29.2 3.6E+02 0.0079 26.3 8.6 20 303-322 70-89 (359)
102 PRK10884 SH3 domain-containing 29.1 2.4E+02 0.0052 26.3 7.4 87 52-143 91-178 (206)
103 PF06120 Phage_HK97_TLTM: Tail 29.0 5.8E+02 0.013 25.3 14.8 75 54-145 41-115 (301)
104 KOG4603 TBP-1 interacting prot 28.3 4.5E+02 0.0098 23.8 16.0 46 156-201 73-118 (201)
105 PRK14127 cell division protein 27.7 3.6E+02 0.0078 22.5 9.6 50 30-87 21-70 (109)
106 COG5293 Predicted ATPase [Gene 27.5 7.5E+02 0.016 26.1 13.9 59 19-84 299-358 (591)
107 PF11348 DUF3150: Protein of u 27.1 3.8E+02 0.0083 25.8 8.7 66 250-335 53-118 (257)
108 PF07956 DUF1690: Protein of U 27.0 4.3E+02 0.0092 23.1 8.9 37 297-333 81-120 (142)
109 PF10174 Cast: RIM-binding pro 25.7 1E+03 0.022 27.0 30.0 256 55-344 4-269 (775)
110 PLN02678 seryl-tRNA synthetase 25.4 2.2E+02 0.0047 29.9 7.1 81 54-146 33-113 (448)
111 PF09548 Spore_III_AB: Stage I 25.2 2.7E+02 0.0058 24.9 6.9 96 175-285 20-120 (170)
112 cd00632 Prefoldin_beta Prefold 24.5 3.8E+02 0.0083 21.7 9.4 93 103-195 5-103 (105)
113 PF11172 DUF2959: Protein of u 24.4 5.8E+02 0.012 23.7 21.9 167 25-246 13-181 (201)
114 cd00890 Prefoldin Prefoldin is 24.2 4.1E+02 0.0089 21.9 9.6 26 163-188 7-32 (129)
115 PF09789 DUF2353: Uncharacteri 23.8 7.5E+02 0.016 24.8 26.9 151 97-259 65-227 (319)
116 KOG0976 Rho/Rac1-interacting s 23.7 1.1E+03 0.024 26.8 28.5 34 50-83 88-121 (1265)
117 PHA03418 hypothetical E4 prote 23.5 1.8E+02 0.0039 27.4 5.3 40 227-269 191-230 (230)
118 PRK04863 mukB cell division pr 23.4 1.4E+03 0.031 28.0 29.5 14 390-403 604-617 (1486)
119 PF04799 Fzo_mitofusin: fzo-li 23.2 3.2E+02 0.0069 24.7 6.7 35 46-80 105-139 (171)
120 PRK05658 RNA polymerase sigma 23.2 1E+03 0.022 26.1 18.3 136 229-381 223-403 (619)
121 PF04949 Transcrip_act: Transc 23.0 5.3E+02 0.011 22.8 8.7 29 104-132 109-140 (159)
122 PF07106 TBPIP: Tat binding pr 22.9 5.3E+02 0.012 22.8 14.6 27 159-185 142-168 (169)
123 KOG3341 RNA polymerase II tran 22.9 2.4E+02 0.0052 26.5 6.0 47 100-146 32-78 (249)
124 PF05597 Phasin: Poly(hydroxya 22.7 3.4E+02 0.0074 23.4 6.6 17 226-242 107-123 (132)
125 PRK09737 EcoKI restriction-mod 22.2 1E+02 0.0023 31.7 4.1 84 268-378 371-455 (461)
126 PF13543 KSR1-SAM: SAM like do 21.9 5.2E+02 0.011 22.2 9.8 53 221-280 74-126 (129)
127 KOG0964 Structural maintenance 21.8 1.3E+03 0.028 26.9 22.9 40 98-137 174-213 (1200)
128 PF02994 Transposase_22: L1 tr 21.8 2E+02 0.0043 29.4 5.9 42 229-270 152-201 (370)
129 KOG1003 Actin filament-coating 21.7 6.5E+02 0.014 23.3 9.9 92 100-200 112-203 (205)
130 cd08915 V_Alix_like Protein-in 21.5 8.1E+02 0.018 24.4 28.3 120 69-193 99-221 (342)
131 PF02403 Seryl_tRNA_N: Seryl-t 21.5 4.4E+02 0.0095 21.3 7.2 69 119-200 37-105 (108)
132 COG1382 GimC Prefoldin, chaper 20.6 5.3E+02 0.011 21.9 9.6 90 104-197 13-112 (119)
133 TIGR00414 serS seryl-tRNA synt 20.5 3.4E+02 0.0073 28.2 7.4 82 54-146 30-111 (418)
134 COG1792 MreC Cell shape-determ 20.4 3.2E+02 0.0069 26.8 6.8 77 360-436 54-131 (284)
135 cd09234 V_HD-PTP_like Protein- 20.3 8.7E+02 0.019 24.2 32.1 35 225-259 185-219 (337)
136 PF10654 DUF2481: Protein of u 20.2 5.3E+02 0.011 21.7 7.4 100 223-334 22-125 (126)
137 PF05557 MAD: Mitotic checkpoi 20.1 1.2E+03 0.027 25.9 12.5 44 158-201 602-646 (722)
No 1
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=100.00 E-value=9.5e-64 Score=519.35 Aligned_cols=395 Identities=55% Similarity=0.819 Sum_probs=364.6
Q ss_pred CCCCCCCCCCCccccHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 1 MAVTDTENPLLGETTCSSLLHKLQEIWDEVGENDEERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASL 80 (440)
Q Consensus 1 ~~~~~~~~~~~~e~~~~~~l~~L~~IW~eiG~~~~er~~~l~~l~~~~~~~~~~~vee~~~~k~~l~~~i~~~~~el~~L 80 (440)
|+.++...+...+++|.+++.+|+.||++||+++++|++++..|+++|.++|+.+|+++...++++.++|+.++++++.|
T Consensus 1 ~~~~~~~~~~~~~~t~~~~~~eL~~IW~~igE~~~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l 80 (660)
T KOG4302|consen 1 TVMMDSEVSLQIEATCGNLLNELQKIWDEIGESETERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDL 80 (660)
T ss_pred CCccccchhhhhHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555455666799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCC
Q 013575 81 LSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLT 160 (440)
Q Consensus 81 ~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~~~~~~~~~~~~~lS 160 (440)
|++||+++... ....+...||.+++..+.+.++.|+++|.+|+.+|.++..+|+.||.+||+...... ....+..|+|
T Consensus 81 ~s~l~~~~~~~-~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~-~~~~D~~dls 158 (660)
T KOG4302|consen 81 CSALGEPSIIG-EISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPS-FLIADESDLS 158 (660)
T ss_pred HHHhCCccccc-ccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCc-ccccCccccc
Confidence 99999998764 134467889999999999999999999999999999999999999999999822111 3445688999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHH
Q 013575 161 LKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLAL 240 (440)
Q Consensus 161 ~e~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~l~~~L~~~~~~~~~e~~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L 240 (440)
.++|+.|+.+|.+|+++|..|+++|.+++.+|+.+|.+||++|..++..+|+++.+..+..+.++|++++++|...+..|
T Consensus 159 l~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l 238 (660)
T KOG4302|consen 159 LEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKL 238 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888899999998877678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhHHHHhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhHH
Q 013575 241 KEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKE 320 (440)
Q Consensus 241 ~~~K~~r~~~~~~l~~~l~~LW~~L~i~~ee~~~F~~~~~~i~~s~~~~~~~~~lS~~~l~~~e~El~RL~~lK~~~lk~ 320 (440)
.++|.+|..++++|+.+|..||++|++|++||..|..+. ++|++.++++|.++|..++.||.||+++|+++||+
T Consensus 239 ~~~k~qr~~kl~~l~~~~~~LWn~l~ts~Ee~~~f~~~t------~~e~t~~~~ls~d~I~~ve~Ev~Rl~qlK~s~mKe 312 (660)
T KOG4302|consen 239 KEEKKQRLQKLQDLRTKLLELWNLLDTSDEERQRFVHVT------ESEATEPNSLSLDIIEQVEKEVDRLEQLKASNMKE 312 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHcccc------HHHhhccccccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 999999999999999999999999999999999998764 77899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCc--chHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhHHh
Q 013575 321 IAFKRQGELEEIFARAHIEI--DPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHSRKEILDKVEKWMSACEEE 398 (440)
Q Consensus 321 li~~~r~el~elWd~~~~~~--eer~~f~~~~~~~~s~~~~~eelL~~~E~Ei~rLk~~~~~~k~Il~~vek~~~l~~e~ 398 (440)
||.+.|.||++||+.+||+. ++|..|.. ..+++|..+..++|+.++.+|.++|+++.+||+|+++|++|.++|+++
T Consensus 313 li~k~r~Eleel~~~~h~s~~~e~~~~f~~--~~~ds~~~d~~ell~~~d~~i~k~keea~srk~il~~ve~W~sa~EeE 390 (660)
T KOG4302|consen 313 LIEKKRSELEELWRLLHYSEENESRRRFIT--YLIDSGTEDVLELLENIDNLIKKYKEEALSRKEILERVEKWESACEEE 390 (660)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHH--HHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999999999 77776643 355667678888888888899999999999999999999999999999
Q ss_pred HHHHHhh
Q 013575 399 SWLEDYN 405 (440)
Q Consensus 399 ~~Lee~~ 405 (440)
.||++||
T Consensus 391 ~~lee~n 397 (660)
T KOG4302|consen 391 SWLEEYN 397 (660)
T ss_pred HHHhccc
Confidence 9999999
No 2
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=100.00 E-value=5.3e-51 Score=436.90 Aligned_cols=347 Identities=37% Similarity=0.534 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhCCCCCCC----CCCCCCCCCCH
Q 013575 38 DKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASL-----------LSALGEKSIAG----LGIPEKTSGTI 102 (440)
Q Consensus 38 ~~~l~~l~~~~~~~~~~~vee~~~~k~~l~~~i~~~~~el~~L-----------~~eLg~~~~~~----~~~~~~~~~sL 102 (440)
+.++..++.+|+++|..++++++..++.|.+.|+.+++++..| |..||.+|+.. .+.....++||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~ee~~~~~~~l~~~i~~~~~E~~~L~~~lg~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~L 82 (619)
T PF03999_consen 3 DLMVVYLEIECLNVYMIKVEEANELKARLLQSIADAEAELADLSSELGEEQEHLCRELEKEPLSLEEEKDILQLEKSMPL 82 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHhcccccccccccchhhhcccccc
Confidence 4577889999999999999999999999999999999999999 44444333221 02234568899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHH
Q 013575 103 KEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDL-TLKKLDEYQAQLQELQKEKSDR 181 (440)
Q Consensus 103 ~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~~~~~~~~~~~~~l-S~e~L~~l~~~l~~L~~ek~~R 181 (440)
.+++..|+++++.|++.+.+|+++|..++.+++.||..||..+.... ...++..++ |.++|+.|+.+++.|+.||..|
T Consensus 83 ~~~~~~L~~~le~l~~~~~eR~~~~~~L~~~~~~l~~~Lg~~~~~~~-~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~R 161 (619)
T PF03999_consen 83 KEQLPKLRPQLEELRKEKEERMQEFKELQEQLEQLCEELGELPLCLN-PFDIDESDLPSLEELEELRQHLQRLQEEKERR 161 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCc-cccCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998765332 123444454 4899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcc-cccccccCCCCC-CCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 182 LHKVLEFVSTVHDLCGVLGMDFF-STVTEVHPSLND-STGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLI 259 (440)
Q Consensus 182 ~~~~~~l~~~I~~l~~~L~~~~~-~~~~e~~~sl~~-~~~~~~~~ls~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~ 259 (440)
+.+|.+++..|..+|++||+++. ... ...+.. .+.+..++||+++|++|...++.|+.+|.+|.+++.+|+.+|.
T Consensus 162 ~~~v~~l~~~I~~l~~~L~~~~~~~~~---e~~l~~~~~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~ 238 (619)
T PF03999_consen 162 LEEVRELREEIISLMEELGIDPERTSF---EKDLLSYSEDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELREKIE 238 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccccc---hhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875 332 111111 0234789999999999999999999999999999999999999
Q ss_pred HHHHhcCCCHHHHHhHHHHhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCC
Q 013575 260 DLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFARAHIE 339 (440)
Q Consensus 260 ~LW~~L~i~~ee~~~F~~~~~~i~~s~~~~~~~~~lS~~~l~~~e~El~RL~~lK~~~lk~li~~~r~el~elWd~~~~~ 339 (440)
.||++|++|++||+.|...+ +++|.++|+++++||+||+++|+++|++||.++|.+|.+|||+|||+
T Consensus 239 ~LW~~L~~~~ee~~~F~~~~-------------~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s 305 (619)
T PF03999_consen 239 ELWNRLDVPEEEREAFLEEN-------------SGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHYS 305 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhCCCHHHHHHHhhcc-------------CcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999997765 56779999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhHHhHHHHHhhh
Q 013575 340 IDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHSRKEILDKVEKWMSACEEESWLEDYNR 406 (440)
Q Consensus 340 ~eer~~f~~~~~~~~s~~~~~eelL~~~E~Ei~rLk~~~~~~k~Il~~vek~~~l~~e~~~Lee~~r 406 (440)
+++|..|.. ++.+ .++|++|+.||.||++|+++|++++|||++|++|.++|++..|||+|++
T Consensus 306 ~eer~~F~~----~~~d-~~~E~lL~~hE~Ei~~Lk~~~~~~k~Il~~v~k~~~l~~~~~~Le~~~~ 367 (619)
T PF03999_consen 306 EEERQAFTP----FYID-SYTEELLELHEEEIERLKEEYESRKPILELVEKWESLWEEMEELEESSK 367 (619)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----Hhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999998743 3333 4789999999999999999999999999999999999999999999885
No 3
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=99.95 E-value=1.5e-25 Score=234.30 Aligned_cols=325 Identities=16% Similarity=0.252 Sum_probs=271.5
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCC
Q 013575 77 LASLLSALGEKSIAGLGIPEKTSGTIKE-QLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVD 155 (440)
Q Consensus 77 l~~L~~eLg~~~~~~~~~~~~~~~sL~~-~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~~~~~~~~~~ 155 (440)
++.|++++|.+.... ...-+-|.+ ..+.|+..+++....++..++++..+++++..||..||..+..+. .+..
T Consensus 23 L~~IW~~igE~~~e~----d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~--~~~k 96 (660)
T KOG4302|consen 23 LQKIWDEIGESETER----DKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGE--ISDK 96 (660)
T ss_pred HHHHHHHhCccHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc--cccc
Confidence 899999999987642 001111111 257888999999999999999999999999999999999886443 1111
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCCCCCCcccCCCHHHHHHHHH
Q 013575 156 ESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAK 235 (440)
Q Consensus 156 ~~~lS~e~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~l~~~L~~~~~~~~~e~~~sl~~~~~~~~~~ls~~~l~~L~~ 235 (440)
....-.+++..+...++.|++.|++|..+|.++..+|..||.+||.++.-. + . ...+..++|+..++.|+.
T Consensus 97 ~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~----~--~---~~~D~~dlsl~kLeelr~ 167 (660)
T KOG4302|consen 97 IEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLP----S--F---LIADESDLSLEKLEELRE 167 (660)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCC----c--c---cccCcccccHHHHHHHHH
Confidence 234558899999999999999999999999999999999999999762211 1 1 113678899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhHHHHhccccccccCCCC--CCCchHHHHHHHHHHHHHHHHH
Q 013575 236 TVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTV--PGALALDLIEQAEVEVERLDQL 313 (440)
Q Consensus 236 ~~~~L~~~K~~r~~~~~~l~~~l~~LW~~L~i~~ee~~~F~~~~~~i~~s~~~~~~--~~~lS~~~l~~~e~El~RL~~l 313 (440)
.+..|+++|..|.+++..+..+|+.||..||++ |......+++|+.+.+. +.++|.+|++.+..-|+.|.+.
T Consensus 168 ~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~------~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~ 241 (660)
T KOG4302|consen 168 HLNELQKEKSDRLEKVLELKEEIKSLCSVLGLD------FSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEE 241 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------cccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 88777888888887664 7889999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHcCCCcchHHHHHHhhh--hhcCCCCChHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Q 013575 314 KASRMKEIAFKRQGELEEIFARAHIEIDPVAAREKIMT--LIDSGNVEPAELLADMDNQIAKAKEEAHSRKEILDKVEKW 391 (440)
Q Consensus 314 K~~~lk~li~~~r~el~elWd~~~~~~eer~~f~~~~~--~~~s~~~~~eelL~~~E~Ei~rLk~~~~~~k~Il~~vek~ 391 (440)
|.+++.++- ..+..+.+||+.|.+|+++|..|.+++. +...+ ..+.+++...+.|+.||.+...++ |-++|.+.
T Consensus 242 k~qr~~kl~-~l~~~~~~LWn~l~ts~Ee~~~f~~~t~~e~t~~~-~ls~d~I~~ve~Ev~Rl~qlK~s~--mKeli~k~ 317 (660)
T KOG4302|consen 242 KKQRLQKLQ-DLRTKLLELWNLLDTSDEERQRFVHVTESEATEPN-SLSLDIIEQVEKEVDRLEQLKASN--MKELIEKK 317 (660)
T ss_pred HHHHHHHHH-HHHHHHHHHHHhccCCHHHHHHHccccHHHhhccc-cccHHHHHHHHHHHHHHHHHHHHh--HHHHHHHH
Confidence 999999976 5999999999999999999999977542 22233 478999999999999999999998 77777776
Q ss_pred HHHhHHhHHHHHhhhhhhhhc--ccccccCcccCccccccCcccccc
Q 013575 392 MSACEEESWLEDYNRVLRISL--FLPLSFPVLPCIPVHESGCVDPWA 436 (440)
Q Consensus 392 ~~l~~e~~~Lee~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 436 (440)
...|+|++|.+|+.- ..-..| ++..+++|.|||..
T Consensus 318 ------r~Eleel~~~~h~s~~~e~~~~f----~~~~~ds~~~d~~e 354 (660)
T KOG4302|consen 318 ------RSELEELWRLLHYSEENESRRRF----ITYLIDSGTEDVLE 354 (660)
T ss_pred ------HHHHHHHHHHHhccccHHHHHHH----HHHHHHhccCCHHH
Confidence 699999999998876 333334 78889999999864
No 4
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=99.86 E-value=1.1e-22 Score=218.68 Aligned_cols=302 Identities=24% Similarity=0.309 Sum_probs=19.9
Q ss_pred cHHHHHHHHHHHHHHhCCChHHHHHH-------------HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 15 TCSSLLHKLQEIWDEVGENDEERDKM-------------LLQIEK-----ECLDVYKRKVEQAAKSRAQLLQALSDAKIE 76 (440)
Q Consensus 15 ~~~~~l~~L~~IW~eiG~~~~er~~~-------------l~~l~~-----~~~~~~~~~vee~~~~k~~l~~~i~~~~~e 76 (440)
..+.+-.++..|+.++|+....-... +.+... .....+...+++.++.+..+.++|..++.+
T Consensus 34 ~i~~~~~E~~~L~~~lg~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~L~~~~~~L~~~le~l~~~~~eR~~~~~~L~~~ 113 (619)
T PF03999_consen 34 SIADAEAELADLSSELGEEQEHLCRELEKEPLSLEEEKDILQLEKSMPLKEQLPKLRPQLEELRKEKEERMQEFKELQEQ 113 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhhhcchhHHHHHHhcccccccccccchhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888877777654422111 111111 233456789999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCC-CCCC--CC
Q 013575 77 LASLLSALGEKSIAGL-GIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLS-LGDQ--AP 152 (440)
Q Consensus 77 l~~L~~eLg~~~~~~~-~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~-~~~~--~~ 152 (440)
+..||..||.++.... ...+..++|-.+++..|+.+++.|++++..|+.+|..+...|..+|..||..|. .... ..
T Consensus 114 ~~~l~~~Lg~~~~~~~~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~R~~~v~~l~~~I~~l~~~L~~~~~~~~~e~~l~ 193 (619)
T PF03999_consen 114 LEQLCEELGELPLCLNPFDIDESDLPSLEELEELRQHLQRLQEEKERRLEEVRELREEIISLMEELGIDPERTSFEKDLL 193 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhccccccccCCccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccchhhcc
Confidence 9999999997764320 113456667567999999999999999999999999999999999999999885 2111 11
Q ss_pred C----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCCCCCCcccCCCHH
Q 013575 153 S----VDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISND 228 (440)
Q Consensus 153 ~----~~~~~lS~e~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~l~~~L~~~~~~~~~e~~~sl~~~~~~~~~~ls~~ 228 (440)
+ ....++|.+.|+.|...+..|+.+|..|..++..+...|..||+.|+++.+.. ..+ . ..+.++|.+
T Consensus 194 ~~~~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~-~~F----~----~~~~~ls~~ 264 (619)
T PF03999_consen 194 SYSEDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELREKIEELWNRLDVPEEER-EAF----L----EENSGLSLD 264 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH-HHH----h----hccCcchHH
Confidence 1 23568999999999999999999999999999999999999999999875433 111 1 246789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCHHHHHhHHHHhccccccccCCCCCCCchHHHHHHHHHHH
Q 013575 229 TLARLAKTVLALKEDKKQRLHKLQE-LATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEV 307 (440)
Q Consensus 229 ~l~~L~~~~~~L~~~K~~r~~~~~~-l~~~l~~LW~~L~i~~ee~~~F~~~~~~i~~s~~~~~~~~~lS~~~l~~~e~El 307 (440)
+|+.++.++++|+..|.++++.+.. .+.+|..||++|.+++++|..|..++. .++++++|+.++.||
T Consensus 265 ~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~------------d~~~E~lL~~hE~Ei 332 (619)
T PF03999_consen 265 TIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHYSEEERQAFTPFYI------------DSYTEELLELHEEEI 332 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhc------------ccchHHHHHHHHHHH
Confidence 9999999999999999999999964 999999999999999999999998875 455689999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCC
Q 013575 308 ERLDQLKASRMKEIAFKRQGELEEIFARAHIE 339 (440)
Q Consensus 308 ~RL~~lK~~~lk~li~~~r~el~elWd~~~~~ 339 (440)
.||++.+..+ +.+. +.-.+...+|+.+..=
T Consensus 333 ~~Lk~~~~~~-k~Il-~~v~k~~~l~~~~~~L 362 (619)
T PF03999_consen 333 ERLKEEYESR-KPIL-ELVEKWESLWEEMEEL 362 (619)
T ss_dssp --HHHHHHHH-HHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHH
Confidence 9999999976 3333 4677777888876543
No 5
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=93.53 E-value=23 Score=42.98 Aligned_cols=258 Identities=15% Similarity=0.221 Sum_probs=157.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 013575 99 SGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEK 178 (440)
Q Consensus 99 ~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~~~~~~~~~~~~~lS~e~L~~l~~~l~~L~~ek 178 (440)
..+...-...|..+|-.|+.. .+.+.+=..+...++.|.+.+....-..+. .........+..+...|.+|..+.
T Consensus 514 ~~~es~S~~iIse~Lv~F~nI-~eLqekN~eLL~~vR~Lae~lE~~E~~~~~----~~~~~~k~~~~~a~e~i~~L~~~l 588 (1822)
T KOG4674|consen 514 TENESDSEEIISERLVEFSNI-NELQEKNVELLNAVRELAEKLEAAEKTQDK----TLQNILKETINEASEKIAELEKEL 588 (1822)
T ss_pred cccCccHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555667777777777654 334444455566777777766654321110 012345677888899999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccc-cccccCCCCCCCCCcccCCC-HHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 013575 179 SDRLHKVLEFVSTVHDLCGVLGMDFFST-VTEVHPSLNDSTGVQSKSIS-NDTLARLAKTVLALKEDKKQRLHKLQ---- 252 (440)
Q Consensus 179 ~~R~~~~~~l~~~I~~l~~~L~~~~~~~-~~e~~~sl~~~~~~~~~~ls-~~~l~~L~~~~~~L~~~K~~r~~~~~---- 252 (440)
..-...|.++......+-..+. +.++. .....++-.+. .+.+.+ ...+..|...+..+..++..++..++
T Consensus 589 ~e~~~~i~sLl~erd~y~e~l~-~~e~~~~~k~nss~~~~---t~~~~~~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~ 664 (1822)
T KOG4674|consen 589 EEQEQRIESLLTERDMYKELLA-ELEDSHQLKPNSSALDQ---TEAPRAKEKRLRQLENELESYKKEKRENLKKLQEDFD 664 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh-cccccccCCCCchhhcc---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877777787777766643332 21111 01111111111 233333 67788888999999888888887664
Q ss_pred HHHHHHHHHHHhcCCCHHHHHhHHHHhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 013575 253 ELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEI 332 (440)
Q Consensus 253 ~l~~~l~~LW~~L~i~~ee~~~F~~~~~~i~~s~~~~~~~~~lS~~~l~~~e~El~RL~~lK~~~lk~li~~~r~el~el 332 (440)
.|+..+..+=.-++-...++.--.....++ ..+|+.++.|+.-|+ -+..++...|.+.-..+..+
T Consensus 665 ~l~~ev~~ir~~l~k~~~~~~fA~ekle~L--------------~~~ie~~K~e~~tL~-er~~~l~~~i~~~~q~~~~~ 729 (1822)
T KOG4674|consen 665 SLQKEVTAIRSQLEKLKNELNLAKEKLENL--------------EKNLELTKEEVETLE-ERNKNLQSTISKQEQTVHTL 729 (1822)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 377777777666665444433223333322 678899999999998 44556666666555443333
Q ss_pred HHHcCCCcchHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHHHHhchHHHHHH-HHHHHHhHHhHHH
Q 013575 333 FARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHSRKEILDKV-EKWMSACEEESWL 401 (440)
Q Consensus 333 Wd~~~~~~eer~~f~~~~~~~~s~~~~~eelL~~~E~Ei~rLk~~~~~~k~Il~~v-ek~~~l~~e~~~L 401 (440)
=+-++ -....++..+.++..||++....++..... ..+.+++.+...|
T Consensus 730 s~eL~---------------------~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L 778 (1822)
T KOG4674|consen 730 SQELL---------------------SANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESL 778 (1822)
T ss_pred HHHHH---------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111 134678889999999999988888887765 5566666555544
No 6
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.41 E-value=23 Score=40.14 Aligned_cols=87 Identities=24% Similarity=0.113 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCcchHHHHHHhhhhhcC---------------------
Q 013575 297 LDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDS--------------------- 355 (440)
Q Consensus 297 ~~~l~~~e~El~RL~~lK~~~lk~li~~~r~el~elWd~~~~~~eer~~f~~~~~~~~s--------------------- 355 (440)
...+..++.|+.|++.-++..-+ -+.+...+...+ +++++-|-.-.+.|+=
T Consensus 905 ~l~~kkle~e~~~~~~e~~~~~k-~v~~l~~k~~wi-------~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~~ 976 (1174)
T KOG0933|consen 905 ELERKKLEHEVTKLESEKANARK-EVEKLLKKHEWI-------GDEKRLFGKKGTDYDFESYDPHEAREELKKLQEKKEK 976 (1174)
T ss_pred cchHHHHHhHHHHhhhhHHHHHH-HHHHHHHhccch-------hHHHHhhcCCCCccccccCCHhHHHHHHHHhhHHHHH
Confidence 55889999999999999886433 333444444332 2343333322222220
Q ss_pred ---C-CCChHHHHHHHHHHHHHHHHHHH----hchHHHHHHHHH
Q 013575 356 ---G-NVEPAELLADMDNQIAKAKEEAH----SRKEILDKVEKW 391 (440)
Q Consensus 356 ---~-~~~~eelL~~~E~Ei~rLk~~~~----~~k~Il~~vek~ 391 (440)
. +.-.-++|+..|..+..++.... .+.-|.+-|++.
T Consensus 977 l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~l 1020 (1174)
T KOG0933|consen 977 LEKTVNPKNMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKL 1020 (1174)
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 0 12345778888888887766543 334455555444
No 7
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=91.05 E-value=21 Score=40.88 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH
Q 013575 297 LDLIEQAEVEVERLDQLKASRMKEI 321 (440)
Q Consensus 297 ~~~l~~~e~El~RL~~lK~~~lk~l 321 (440)
...|.+...++..|..-|...+..|
T Consensus 449 ~k~i~~~~~~l~~lk~~k~dkvs~F 473 (1074)
T KOG0250|consen 449 RKKIENISEELKDLKKTKTDKVSAF 473 (1074)
T ss_pred HHHHHHHHHHHHHHHhcccchhhhc
Confidence 4466667777777776666555444
No 8
>PF13514 AAA_27: AAA domain
Probab=90.45 E-value=42 Score=39.43 Aligned_cols=88 Identities=16% Similarity=0.248 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 53 KRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKT---SGTIKEQLAAIAPALEQLWKQKEERVKEFSD 129 (440)
Q Consensus 53 ~~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~---~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~ 129 (440)
...+++...........+...+.+....+..+|.++... +.. .+...+.+......+..++.+...-...+..
T Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~----~~~~~~~l~~l~~l~~~~~~~~~~~~ri~~~~~~~~~ 761 (1111)
T PF13514_consen 686 EQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADAS----PEEALEALELLEELREALAEIRELRRRIEQMEADLAA 761 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666677777778888888888888899887642 111 2233333444445666666666666677777
Q ss_pred HHHHHHHHHhHhcCC
Q 013575 130 VQSQIQKICGEIAGN 144 (440)
Q Consensus 130 l~~~i~~L~~~L~~~ 144 (440)
....+..+...++..
T Consensus 762 f~~~~~~L~~~l~~~ 776 (1111)
T PF13514_consen 762 FEEQVAALAERLGPD 776 (1111)
T ss_pred HHHHHHHHHHHcCcc
Confidence 777777777777654
No 9
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.13 E-value=49 Score=38.28 Aligned_cols=101 Identities=21% Similarity=0.219 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhHHHHhccccccccCCCCCCCchHHHHHHHHHH
Q 013575 227 NDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVE 306 (440)
Q Consensus 227 ~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~~LW~~L~i~~ee~~~F~~~~~~i~~s~~~~~~~~~lS~~~l~~~e~E 306 (440)
+.++.+++..+.++......-..++..|...+..+=.+...-..+-..+.+....+..+ +.++...++..
T Consensus 934 ~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~----------~~~~k~~~e~i 1003 (1293)
T KOG0996|consen 934 DRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKE----------LRDLKSELENI 1003 (1293)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Confidence 34566666666666666665555555555555555554443333344444444433211 13344444444
Q ss_pred HHHHHHHHHHhh--HHHHHHHHHHHHHHHHHcC
Q 013575 307 VERLDQLKASRM--KEIAFKRQGELEEIFARAH 337 (440)
Q Consensus 307 l~RL~~lK~~~l--k~li~~~r~el~elWd~~~ 337 (440)
-....++|..+| +.-+.+.+.+|.++=..-.
T Consensus 1004 ~k~~~~lk~~rId~~~K~e~~~~~l~e~~~~~~ 1036 (1293)
T KOG0996|consen 1004 KKSENELKAERIDIENKLEAINGELNEIESKIK 1036 (1293)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhhhh
Confidence 444444555443 4445566777766644433
No 10
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=89.00 E-value=64 Score=39.39 Aligned_cols=263 Identities=18% Similarity=0.240 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCC-CCCC---
Q 013575 19 LLHKLQEIWDEVGENDEERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSAL---GEK-SIAG--- 91 (440)
Q Consensus 19 ~l~~L~~IW~eiG~~~~er~~~l~~l~~~~~~~~~~~vee~~~~k~~l~~~i~~~~~el~~L~~eL---g~~-~~~~--- 91 (440)
++.-++.+-+.+-..+..-+.++....+...+...+.|++..+......+.|..+..+...+-.-+ -.. +..+
T Consensus 544 LL~~vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss 623 (1822)
T KOG4674|consen 544 LLNAVRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNSS 623 (1822)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCch
Confidence 444455555555444433355555555555566677777777777777777777776666553222 111 1110
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHH
Q 013575 92 LGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVK----EFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEY 167 (440)
Q Consensus 92 ~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~----~~~~l~~~i~~L~~~L~~~~~~~~~~~~~~~~~lS~e~L~~l 167 (440)
.....+.+.+...++..+...++.++.++..+++ .|..++..+..|-..++-... ...++.+++..|
T Consensus 624 ~~~~t~~~~~~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~---------~~~fA~ekle~L 694 (1822)
T KOG4674|consen 624 ALDQTEAPRAKEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKN---------ELNLAKEKLENL 694 (1822)
T ss_pred hhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---------HHHHHHHHHHHH
Confidence 0111223333466777777788888777776654 455666666666666665443 346688888888
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHH
Q 013575 168 QAQLQELQKEKS---DRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDK 244 (440)
Q Consensus 168 ~~~l~~L~~ek~---~R~~~~~~l~~~I~~l~~~L~~~~~~~~~e~~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L~~~K 244 (440)
...++.++.+.. .|...+.+....-......+.-+ ..-+...+.++...+..|..++
T Consensus 695 ~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~e--------------------L~~a~~k~~~le~ev~~LKqE~ 754 (1822)
T KOG4674|consen 695 EKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQE--------------------LLSANEKLEKLEAELSNLKQEK 754 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHhhhHHHHHHHHHHHHHHHHH
Confidence 888888888877 45544444443333333333211 1113456777888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHhHHHHhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 013575 245 KQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAFK 324 (440)
Q Consensus 245 ~~r~~~~~~l~~~l~~LW~~L~i~~ee~~~F~~~~~~i~~s~~~~~~~~~lS~~~l~~~e~El~RL~~lK~~~lk~li~~ 324 (440)
.-+...-..|......|..... .-... ...+....+++++.+.-.+..+..=|..
T Consensus 755 ~ll~~t~~rL~~e~~~l~~e~~-------~L~~~------------------l~~lQt~~~~~e~s~~~~k~~~e~~i~e 809 (1822)
T KOG4674|consen 755 LLLKETEERLSQELEKLSAEQE-------SLQLL------------------LDNLQTQKNELEESEMATKDKCESRIKE 809 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766666666666665544321 11111 2344555555555555555555555555
Q ss_pred HHHHHHHHHHH
Q 013575 325 RQGELEEIFAR 335 (440)
Q Consensus 325 ~r~el~elWd~ 335 (440)
...+|..+-..
T Consensus 810 L~~el~~lk~k 820 (1822)
T KOG4674|consen 810 LERELQKLKKK 820 (1822)
T ss_pred HHHHHHHHHHH
Confidence 55555555555
No 11
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=87.75 E-value=48 Score=36.48 Aligned_cols=39 Identities=13% Similarity=0.203 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcC
Q 013575 299 LIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFARAH 337 (440)
Q Consensus 299 ~l~~~e~El~RL~~lK~~~lk~li~~~r~el~elWd~~~ 337 (440)
.+...+.=...|..++.......+......+.+....+.
T Consensus 481 ~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~f~~l~ 519 (650)
T TIGR03185 481 AITIADKAKKTLKEFREKLLERKLQQLEEEITKSFKKLM 519 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444445556666666666666666666677776664
No 12
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=87.31 E-value=32 Score=33.90 Aligned_cols=83 Identities=14% Similarity=0.290 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013575 102 IKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDR 181 (440)
Q Consensus 102 L~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~~~~~~~~~~~~~lS~e~L~~l~~~l~~L~~ek~~R 181 (440)
....+..++..++.+...+.....++..+...+..+-..+... ......+...+..+++..+.=
T Consensus 52 ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e----------------~~~~~~le~el~~lrk~ld~~ 115 (312)
T PF00038_consen 52 YEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE----------------LAERKDLEEELESLRKDLDEE 115 (312)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH----------------HHHHHHHHHHHhhhhhhhhhh
Confidence 4455677777777777777777777777777776664433321 223333444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHhC
Q 013575 182 LHKVLEFVSTVHDLCGVLG 200 (440)
Q Consensus 182 ~~~~~~l~~~I~~l~~~L~ 200 (440)
...-..+.+.|..|..+|.
T Consensus 116 ~~~r~~le~~i~~L~eEl~ 134 (312)
T PF00038_consen 116 TLARVDLENQIQSLKEELE 134 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhHHHHHHHHHHHHHH
Confidence 4444445555555554443
No 13
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=86.87 E-value=31 Score=37.23 Aligned_cols=123 Identities=19% Similarity=0.198 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 52 YKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQ 131 (440)
Q Consensus 52 ~~~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~ 131 (440)
+...+.+...........++++..++....+.+...|. ++..+..++..++..+..--..+.++.
T Consensus 264 ~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~---------------~L~ele~RL~~l~~LkrKyg~s~e~l~ 328 (563)
T TIGR00634 264 IDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPE---------------RLNEIEERLAQIKRLKRKYGASVEEVL 328 (563)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 55566666666666666666666767666666644332 455666666666665555555666666
Q ss_pred HHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhCCC
Q 013575 132 SQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEK--------SDRLHKVLEFVSTVHDLCGVLGMD 202 (440)
Q Consensus 132 ~~i~~L~~~L~~~~~~~~~~~~~~~~~lS~e~L~~l~~~l~~L~~ek--------~~R~~~~~~l~~~I~~l~~~L~~~ 202 (440)
.....+-.+|..... +.+.++.++..+..++.++ ..|.+....+...+......|+++
T Consensus 329 ~~~~~l~~eL~~l~~-------------~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~l~~L~m~ 394 (563)
T TIGR00634 329 EYAEKIKEELDQLDD-------------SDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAKRVEQELKALAME 394 (563)
T ss_pred HHHHHHHHHHHHHhC-------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 666666666655332 2334555555555555444 356777778888999999999986
No 14
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=85.84 E-value=60 Score=35.71 Aligned_cols=207 Identities=13% Similarity=0.155 Sum_probs=117.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 013575 100 GTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKS 179 (440)
Q Consensus 100 ~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~~~~~~~~~~~~~lS~e~L~~l~~~l~~L~~ek~ 179 (440)
..+..+++.+..++..+........+++..+...+..+-..+........ . ...-..+..+.+...+..++.++.
T Consensus 205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~---~--~GG~~~~~r~~Le~ei~~le~e~~ 279 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFR---S--EGGDLFEEREQLERQLKEIEAARK 279 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--hcchHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888888888877777777777777777777665543221000 0 011244556677777777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 013575 180 DRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQE-LATQL 258 (440)
Q Consensus 180 ~R~~~~~~l~~~I~~l~~~L~~~~~~~~~e~~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L~~~K~~r~~~~~~-l~~~l 258 (440)
++...+..+.+ .. -++.+....+..+...+...+.-+ +.+.+.+ +....
T Consensus 280 e~~~~l~~l~~-------~~---------------------~p~~l~~~ll~~~~~q~~~e~~~~--~~~~~~~~l~~~~ 329 (650)
T TIGR03185 280 ANRAQLRELAA-------DP---------------------LPLLLIPNLLDSTKAQLQKEEQSQ--QNQLTQEELEERD 329 (650)
T ss_pred HHHHHHHHHhc-------cc---------------------CCHhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 66654432221 11 245666777888888877765333 3333444 44777
Q ss_pred HHHHHhc---CCCHHHHHhHHHHhcccc-ccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHH
Q 013575 259 IDLWNLM---DTPSEERRLFDHVTCNIS-AYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIA---FKRQGELEE 331 (440)
Q Consensus 259 ~~LW~~L---~i~~ee~~~F~~~~~~i~-~s~~~~~~~~~lS~~~l~~~e~El~RL~~lK~~~lk~li---~~~r~el~e 331 (440)
..+|..+ ..+....+.......... +...+..-+-++|...+..+..-++.+..-....+..++ .+...+|.+
T Consensus 330 ~~i~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~ 409 (650)
T TIGR03185 330 KELLESLPKLALPAEHVKEIAAELAEIDKPATTDSEIPHRLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAE 409 (650)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHhhcccccccccccccCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7788766 556554444443322111 112222234455566666666555554422222333332 357888888
Q ss_pred HHHHcCCCcc
Q 013575 332 IFARAHIEID 341 (440)
Q Consensus 332 lWd~~~~~~e 341 (440)
+=.++.-.++
T Consensus 410 l~~~l~~~~~ 419 (650)
T TIGR03185 410 VDKKISTIPS 419 (650)
T ss_pred HHHHHhcCCC
Confidence 8888877665
No 15
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=84.54 E-value=1.1e+02 Score=37.79 Aligned_cols=157 Identities=24% Similarity=0.221 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 106 LAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKV 185 (440)
Q Consensus 106 l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~~~~~~~~~~~~~lS~e~L~~l~~~l~~L~~ek~~R~~~~ 185 (440)
++.+..+++.+.+.|..+-++=..++..+..++..++.-..... + .......+...+.+++...+.=...+
T Consensus 1191 ~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~--------~-~e~~~k~~E~~l~elq~k~~~~~~~~ 1261 (1930)
T KOG0161|consen 1191 LAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKK--------D-LEKKDKKLEAQLSELQLKLDEQERLR 1261 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--------c-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566678888888888888888888888888887775432111 0 11122334445555555444444444
Q ss_pred HHHHHHHHHHHHHhCCCcccccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013575 186 LEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLM 265 (440)
Q Consensus 186 ~~l~~~I~~l~~~L~~~~~~~~~e~~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~~LW~~L 265 (440)
.++......++++.+. +.....+....+... .....-=...|+.++..++.-...+......+..+..++..|=+.+
T Consensus 1262 ~~l~~q~~~l~~E~~~-l~~~lee~e~~~~~~--~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~l 1338 (1930)
T KOG0161|consen 1262 NDLTAKRSRLQNENEE-LSRQLEEAEAKLSAL--SRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQL 1338 (1930)
T ss_pred HHHHHHHHHhhhhHHH-HhhHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666552 111100000000000 0000001223455555555555566666666677788888888888
Q ss_pred CCCHHHHHh
Q 013575 266 DTPSEERRL 274 (440)
Q Consensus 266 ~i~~ee~~~ 274 (440)
...++-+..
T Consensus 1339 eee~e~~~~ 1347 (1930)
T KOG0161|consen 1339 EEEQEAKNE 1347 (1930)
T ss_pred HHHHHHHHH
Confidence 766555443
No 16
>PHA02562 46 endonuclease subunit; Provisional
Probab=84.20 E-value=25 Score=37.63 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013575 229 TLARLAKTVLALKEDKK 245 (440)
Q Consensus 229 ~l~~L~~~~~~L~~~K~ 245 (440)
.++.+...+..+..++.
T Consensus 387 ~l~~~~~~~~~~~ke~~ 403 (562)
T PHA02562 387 ELDKIVKTKSELVKEKY 403 (562)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555544443
No 17
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=83.50 E-value=1.1e+02 Score=36.56 Aligned_cols=45 Identities=13% Similarity=0.341 Sum_probs=32.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhC
Q 013575 156 ESDLTLKKLDEYQAQLQELQKEK---SDRLHKVLEFVSTVHDLCGVLG 200 (440)
Q Consensus 156 ~~~lS~e~L~~l~~~l~~L~~ek---~~R~~~~~~l~~~I~~l~~~L~ 200 (440)
+.++-...|..++..+..|+++. ..+...|.+...-+...|..+.
T Consensus 765 ~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~ 812 (1201)
T PF12128_consen 765 GKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVD 812 (1201)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 34556778888888888888765 5566677777777777776654
No 18
>PF10239 DUF2465: Protein of unknown function (DUF2465); InterPro: IPR018797 FAM98A, B and C are glycine-rich proteins found from worms to humans whose function is unknown.
Probab=83.30 E-value=46 Score=33.24 Aligned_cols=82 Identities=23% Similarity=0.280 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCC
Q 013575 71 SDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQ 150 (440)
Q Consensus 71 ~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~~~~~ 150 (440)
.....++..+|..||.+..+ .+.+..+.++.+..+++++- ..+... +.+.
T Consensus 129 s~~~~~l~~i~~~L~l~~p~-------~~i~~~~lf~~i~~ki~~~L---------------------~~lp~~-~~~~- 178 (318)
T PF10239_consen 129 SEVAQELKAICQALGLPKPP-------PNITASQLFSKIEAKIEELL---------------------SKLPPG-HMGK- 178 (318)
T ss_pred cHHHHHHHHHHHHhCCCCCC-------CCCCHHHHHHHHHHHHHHHH---------------------HhcCcc-ccCC-
Confidence 44566889999999998754 46677766666666665443 222211 1122
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 151 APSVDESDLTLKKLDEYQAQLQELQKEKSDRLHK 184 (440)
Q Consensus 151 ~~~~~~~~lS~e~L~~l~~~l~~L~~ek~~R~~~ 184 (440)
|- -...+|.++.+.|...-+.|..||.-|...
T Consensus 179 -PL-l~~~L~~~Qw~~Le~i~~~L~~EY~~RR~m 210 (318)
T PF10239_consen 179 -PL-LKKSLTDEQWEKLEKINQALSKEYECRRQM 210 (318)
T ss_pred -CC-cCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 256899999999999999999999999983
No 19
>PRK11637 AmiB activator; Provisional
Probab=82.67 E-value=64 Score=33.48 Aligned_cols=87 Identities=14% Similarity=0.173 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013575 101 TIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSD 180 (440)
Q Consensus 101 sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~~~~~~~~~~~~~lS~e~L~~l~~~l~~L~~ek~~ 180 (440)
.+.++++.++.++..+.+...+-..+...+..++..+-..|......... .-..-.-...++..++..+..++.+...
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~--~~~~i~~~~~ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRE--TQNTLNQLNKQIDELNASIAKLEQQQAA 121 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666655555555555555555544433211100 0000011344555555555555555555
Q ss_pred HHHHHHHHH
Q 013575 181 RLHKVLEFV 189 (440)
Q Consensus 181 R~~~~~~l~ 189 (440)
+...+....
T Consensus 122 ~~~~l~~rl 130 (428)
T PRK11637 122 QERLLAAQL 130 (428)
T ss_pred HHHHHHHHH
Confidence 555443333
No 20
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=82.13 E-value=99 Score=35.29 Aligned_cols=91 Identities=21% Similarity=0.171 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCcchHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHHHHh
Q 013575 301 EQAEVEVERLDQLKASRMKEIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHS 380 (440)
Q Consensus 301 ~~~e~El~RL~~lK~~~lk~li~~~r~el~elWd~~~~~~eer~~f~~~~~~~~s~~~~~eelL~~~E~Ei~rLk~~~~~ 380 (440)
.++..|++++...|.- ..+.|.|..+--+.++..|++ +|.+ +.+ .-+.+|+..+..=..+|+.+-..
T Consensus 905 ~~~dKe~Ek~~~rk~~-----Ll~KreE~~ekIr~lG~Lp~d--af~k-----y~~-~~~~el~kkL~~~neelk~ys~V 971 (1200)
T KOG0964|consen 905 INFDKELEKLVRRKHM-----LLKKREECCEKIRELGVLPED--AFEK-----YQD-KKSKELMKKLHRCNEELKGYSNV 971 (1200)
T ss_pred hhhhHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCCCchH--HHHH-----hcc-CCHHHHHHHHHHHHHHHhhcchh
Confidence 3444666666655553 234788877777777998865 4543 222 45677877777777777777777
Q ss_pred chHHHHHH----HHHHHHhHHhHHHHHh
Q 013575 381 RKEILDKV----EKWMSACEEESWLEDY 404 (440)
Q Consensus 381 ~k~Il~~v----ek~~~l~~e~~~Lee~ 404 (440)
+|--|+-+ +++.+|.+=...|..+
T Consensus 972 NKkAldQf~nfseQre~L~~R~eELd~s 999 (1200)
T KOG0964|consen 972 NKKALDQFVNFSEQRESLKKRQEELDRS 999 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 76666644 2233444444444443
No 21
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.59 E-value=79 Score=33.80 Aligned_cols=67 Identities=16% Similarity=0.228 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 66 LLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAA-------IAPALEQLWKQKEERVKEFSDVQSQIQKI 137 (440)
Q Consensus 66 l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~-------l~~~le~l~~~k~~R~~~~~~l~~~i~~L 137 (440)
+-.+|+.++++-..|..-|..--- .+...-+|.++.+. ++..+..+...+..+-+.+..++.+|..-
T Consensus 233 i~~~ie~l~~~n~~l~e~i~e~ek-----~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~k 306 (581)
T KOG0995|consen 233 IANEIEDLKKTNRELEEMINEREK-----DPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEK 306 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-----CcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 444555555555555555542111 12334455555443 34455555666666666666655555443
No 22
>PHA02562 46 endonuclease subunit; Provisional
Probab=79.91 E-value=90 Score=33.38 Aligned_cols=96 Identities=10% Similarity=0.157 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 013575 36 ERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQ 115 (440)
Q Consensus 36 er~~~l~~l~~~~~~~~~~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~ 115 (440)
+|..++..+-. .+.|..+-...........+.++.+..++..+-..+..-.... ..-.-........++..++.
T Consensus 151 er~~il~~l~~--~~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i----~~~~~~~~~~i~~l~~e~~~ 224 (562)
T PHA02562 151 ARRKLVEDLLD--ISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNI----EEQRKKNGENIARKQNKYDE 224 (562)
T ss_pred hHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHH
Confidence 45444444322 2334444444444444555555555555555555443211100 00000111235555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013575 116 LWKQKEERVKEFSDVQSQIQKI 137 (440)
Q Consensus 116 l~~~k~~R~~~~~~l~~~i~~L 137 (440)
+.........++..+++++..+
T Consensus 225 l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 225 LVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666555666665555444
No 23
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=79.61 E-value=97 Score=33.56 Aligned_cols=64 Identities=17% Similarity=0.287 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013575 18 SLLHKLQEIWDEVGEND-EERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSAL 84 (440)
Q Consensus 18 ~~l~~L~~IW~eiG~~~-~er~~~l~~l~~~~~~~~~~~vee~~~~k~~l~~~i~~~~~el~~L~~eL 84 (440)
..+.+++.=|++|--.. ...+..++.++..+. .-.|-.++...+.+...|.....++..|..+|
T Consensus 64 ~~f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~~---~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l 128 (569)
T PRK04778 64 EKFEEWRQKWDEIVTNSLPDIEEQLFEAEELND---KFRFRKAKHEINEIESLLDLIEEDIEQILEEL 128 (569)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999975443 355666766655322 23444555555555555555555555555444
No 24
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.15 E-value=1.3e+02 Score=34.62 Aligned_cols=203 Identities=11% Similarity=0.129 Sum_probs=95.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCCCCCCcccCCCHHHHHHHHHHHH
Q 013575 159 LTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVL 238 (440)
Q Consensus 159 lS~e~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~l~~~L~~~~~~~~~e~~~sl~~~~~~~~~~ls~~~l~~L~~~~~ 238 (440)
-..+.+..+...+.+++.+...-...+......|..|=+.+.-.....-... .+ -...|+.+....+
T Consensus 738 ~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rl----kd---------l~keik~~k~~~e 804 (1174)
T KOG0933|consen 738 KLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRL----KD---------LEKEIKTAKQRAE 804 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHH----HH---------HHHHHHHHHHHHH
Confidence 3566777777777777777776666666666666666555542111110000 00 0011222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhHHHHhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhh
Q 013575 239 ALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRM 318 (440)
Q Consensus 239 ~L~~~K~~r~~~~~~l~~~l~~LW~~L~i~~ee~~~F~~~~~~i~~s~~~~~~~~~lS~~~l~~~e~El~RL~~lK~~~l 318 (440)
.-...-..+...++.+..++..|=.-... -...+.+. ...++.++.|+..|..--.. .
T Consensus 805 ~~~~~~ek~~~e~e~l~lE~e~l~~e~~~-------~k~~l~~~--------------~~~~~~l~~e~~~l~~kv~~-~ 862 (1174)
T KOG0933|consen 805 ESSKELEKRENEYERLQLEHEELEKEISS-------LKQQLEQL--------------EKQISSLKSELGNLEAKVDK-V 862 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH--------------HHHHHHHHHHHHHHHHHHHh-H
Confidence 22222223333333344444433322221 11111110 34555566666555543322 2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcchHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHHHHhchHHHH-HHHHHHHHhHH
Q 013575 319 KEIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHSRKEILD-KVEKWMSACEE 397 (440)
Q Consensus 319 k~li~~~r~el~elWd~~~~~~eer~~f~~~~~~~~s~~~~~eelL~~~E~Ei~rLk~~~~~~k~Il~-~vek~~~l~~e 397 (440)
..=+.++.++|.+.-+++.....+-..+......+-+.....+.-....+.++.+++...+..+-..+ ++.+
T Consensus 863 ~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k------- 935 (1174)
T KOG0933|consen 863 EKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKK------- 935 (1174)
T ss_pred HhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHh-------
Confidence 33334566666666655554443322111111111111224566678889999999888776654444 3444
Q ss_pred hHHHHH
Q 013575 398 ESWLED 403 (440)
Q Consensus 398 ~~~Lee 403 (440)
-.||.+
T Consensus 936 ~~wi~~ 941 (1174)
T KOG0933|consen 936 HEWIGD 941 (1174)
T ss_pred ccchhH
Confidence 488874
No 25
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=77.13 E-value=1.1e+02 Score=32.84 Aligned_cols=172 Identities=13% Similarity=0.139 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 013575 63 RAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIA 142 (440)
Q Consensus 63 k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~ 142 (440)
...|-.+...+..++..+....|-+.+........ .+...+.-+++-.+.++....++..+..++..+-..+.
T Consensus 58 VR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~-------El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~ 130 (546)
T KOG0977|consen 58 VRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEA-------ELATARKLLDETARERAKLEIEITKLREELKELRKKLE 130 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455666667777777777777654321000011 13344445555555555555666666666655544333
Q ss_pred CCCC--CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCCCCCC
Q 013575 143 GNLS--LGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGV 220 (440)
Q Consensus 143 ~~~~--~~~~~~~~~~~~lS~e~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~l~~~L~~~~~~~~~e~~~sl~~~~~~ 220 (440)
.... .+.. ...+--...+..++..+..++..+..-...+..++.++..|+..|+-- .. ..+
T Consensus 131 ~~~k~~~~~r----e~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~-r~---~ld--------- 193 (546)
T KOG0977|consen 131 KAEKERRGAR----EKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARA-RK---QLD--------- 193 (546)
T ss_pred HHHHHHhhhH----HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HH---HHH---------
Confidence 2211 0000 001112334555555555555555555555566666777777666620 00 000
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 221 QSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQL 258 (440)
Q Consensus 221 ~~~~ls~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l 258 (440)
+...+-.+.-.+.+.++++|.-.+......+.+.+...
T Consensus 194 ~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~ 231 (546)
T KOG0977|consen 194 DETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKA 231 (546)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 11222334455666777777777766666666554444
No 26
>PRK11637 AmiB activator; Provisional
Probab=75.66 E-value=1.1e+02 Score=31.89 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 013575 109 IAPALEQLWKQKEERVKEFSDVQSQIQKICGE 140 (440)
Q Consensus 109 l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~ 140 (440)
+..+++.++++..+..+++..++.++..+-..
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~ 76 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQ 76 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444443333
No 27
>PRK10869 recombination and repair protein; Provisional
Probab=75.18 E-value=1.3e+02 Score=32.58 Aligned_cols=193 Identities=14% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013575 102 IKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDR 181 (440)
Q Consensus 102 L~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~~~~~~~~~~~~~lS~e~L~~l~~~l~~L~~ek~~R 181 (440)
.-+.+..+..++++++....++.+++.-++-++..| +.+...|. .-++|+.++. |
T Consensus 162 ~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei-~~~~l~~g-----------------------E~eeL~~e~~-~ 216 (553)
T PRK10869 162 AYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKEL-NEFAPQPG-----------------------EFEQIDEEYK-R 216 (553)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HhCCCCCC-----------------------cHHHHHHHHH-H
Q ss_pred HHHHHHHHHHHHHHHHHhCC-CcccccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 182 LHKVLEFVSTVHDLCGVLGM-DFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLID 260 (440)
Q Consensus 182 ~~~~~~l~~~I~~l~~~L~~-~~~~~~~e~~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~~ 260 (440)
+.-...+.+.+......|.- +.......+ ....=....+..+...+..+.+.-..-.-.++++...+..
T Consensus 217 L~n~e~i~~~~~~~~~~L~~~~~~~~~~~l----------~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~ 286 (553)
T PRK10869 217 LANSGQLLTTSQNALQLLADGEEVNILSQL----------YSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRH 286 (553)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccHHHHH----------HHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhcCCCHHH-------HHhHHHHhccccccccCCCCCCCchHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHH
Q 013575 261 LWNLMDTPSEE-------RRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQL--KASRMKEIAFKRQGELEE 331 (440)
Q Consensus 261 LW~~L~i~~ee-------~~~F~~~~~~i~~s~~~~~~~~~lS~~~l~~~e~El~RL~~l--K~~~lk~li~~~r~el~e 331 (440)
+-+.+.++++. ........+-+++|.+++ ....+.++.|++.|... ..+.+..=+.+.+.++.+
T Consensus 287 ~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~-------~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~ 359 (553)
T PRK10869 287 YLDRLDLDPNRLAELEQRLSKQISLARKHHVSPEEL-------PQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALE 359 (553)
T ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHH-------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHc
Q 013575 332 IFARA 336 (440)
Q Consensus 332 lWd~~ 336 (440)
+-..+
T Consensus 360 ~A~~L 364 (553)
T PRK10869 360 TAQKL 364 (553)
T ss_pred HHHHH
No 28
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=74.89 E-value=91 Score=31.72 Aligned_cols=34 Identities=21% Similarity=0.400 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013575 52 YKRKVEQAAKSRAQLLQALSDAKIELASLLSALG 85 (440)
Q Consensus 52 ~~~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg 85 (440)
|+.-++++...+..+...+......+..|...++
T Consensus 218 WR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~ 251 (359)
T PF10498_consen 218 WRSHLEQMKQHKKSIESALPETKSQLDKLQQDIS 251 (359)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555554
No 29
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=74.19 E-value=99 Score=30.88 Aligned_cols=90 Identities=11% Similarity=0.009 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-C---CCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 013575 54 RKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAG-L---GIPEKTSGTIKEQLAAIAP--ALEQLWKQKEERVKEF 127 (440)
Q Consensus 54 ~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~-~---~~~~~~~~sL~~~l~~l~~--~le~l~~~k~~R~~~~ 127 (440)
++++--.-...+|.+.|.+.+..+..+-.++...+++. . -..+.....+..++..+++ ++..-...+.=|++.+
T Consensus 68 P~Lely~~~c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll 147 (325)
T PF08317_consen 68 PMLELYQFSCRELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQFQLVKTYARLEAKKMWYEWRMQLL 147 (325)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666677788888888888888888776543221 0 0123344455566666665 5777777788889888
Q ss_pred HHHHHHHHHHHhHhcC
Q 013575 128 SDVQSQIQKICGEIAG 143 (440)
Q Consensus 128 ~~l~~~i~~L~~~L~~ 143 (440)
..++..+..-...|-.
T Consensus 148 ~gl~~~L~~~~~~L~~ 163 (325)
T PF08317_consen 148 EGLKEGLEENLELLQE 163 (325)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888887776665544
No 30
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=73.05 E-value=2.5e+02 Score=35.04 Aligned_cols=35 Identities=26% Similarity=0.391 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 013575 53 KRKVEQAAKSRAQLLQALSDAKIELASLLSALGEK 87 (440)
Q Consensus 53 ~~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~ 87 (440)
..-+.+.+..+..+...+.....++..+...++..
T Consensus 1054 ~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e 1088 (1930)
T KOG0161|consen 1054 QESIEELKKQKEELDNQLKKKESELSQLQSKLEDE 1088 (1930)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 44444555556666666666666666555555543
No 31
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=72.08 E-value=1.4e+02 Score=31.57 Aligned_cols=145 Identities=14% Similarity=0.175 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 54 RKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQ 133 (440)
Q Consensus 54 ~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~ 133 (440)
..+.+.+........++...+..+..|...++..+...........-++..++..++.++..+...+-+..-.+..++.+
T Consensus 204 ~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~q 283 (498)
T TIGR03007 204 SEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKRE 283 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHH
Confidence 34455556666666667777777777777776432211001122345788899999999999999999888899999999
Q ss_pred HHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013575 134 IQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLG 200 (440)
Q Consensus 134 i~~L~~~L~~~~~~~~~~~~~~~~~lS~e~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~l~~~L~ 200 (440)
+..+-..+......... .......+...+..+...+..++.+...-..++..+...+..+-..++
T Consensus 284 i~~l~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 348 (498)
T TIGR03007 284 IAQLEEQKEEEGSAKNG--GPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLR 348 (498)
T ss_pred HHHHHHHHHhhcccccc--CcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98887765432211000 000011122234666677777777776666666666666666655554
No 32
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=70.34 E-value=2.4e+02 Score=33.65 Aligned_cols=45 Identities=18% Similarity=0.406 Sum_probs=33.6
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcC
Q 013575 222 SKSISNDTLARLAKTVLALKEDK---KQRLHKLQELATQLIDLWNLMD 266 (440)
Q Consensus 222 ~~~ls~~~l~~L~~~~~~L~~~K---~~r~~~~~~l~~~l~~LW~~L~ 266 (440)
.-|+.+..|..|+..+..|+..- ..+...+.+|..-+...|....
T Consensus 765 ~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~ 812 (1201)
T PF12128_consen 765 GKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVD 812 (1201)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 46677778888888887776554 3455667789999999999855
No 33
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=69.83 E-value=1.7e+02 Score=31.69 Aligned_cols=66 Identities=17% Similarity=0.328 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013575 17 SSLLHKLQEIWDEVGEN-DEERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALG 85 (440)
Q Consensus 17 ~~~l~~L~~IW~eiG~~-~~er~~~l~~l~~~~~~~~~~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg 85 (440)
...+.+++.=|++|--. =.+.+..++.++.. +-.-.+-.++.....+.+.+.....++..|..+|.
T Consensus 59 ~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~---~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~ 125 (560)
T PF06160_consen 59 EEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEY---ADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELD 125 (560)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44688999999999733 34667777777663 22445566666666666666666666666666554
No 34
>PRK02224 chromosome segregation protein; Provisional
Probab=66.68 E-value=2.4e+02 Score=32.20 Aligned_cols=21 Identities=14% Similarity=0.501 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHhchHH
Q 013575 364 LADMDNQIAKAKEEAHSRKEI 384 (440)
Q Consensus 364 L~~~E~Ei~rLk~~~~~~k~I 384 (440)
++.++.++..++..+..-+.+
T Consensus 484 ~~~le~~l~~~~~~~e~l~~~ 504 (880)
T PRK02224 484 LEDLEEEVEEVEERLERAEDL 504 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444555554444443333
No 35
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=65.19 E-value=10 Score=26.69 Aligned_cols=25 Identities=28% Similarity=0.614 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHh-chHHHHHHH
Q 013575 365 ADMDNQIAKAKEEAHS-RKEILDKVE 389 (440)
Q Consensus 365 ~~~E~Ei~rLk~~~~~-~k~Il~~ve 389 (440)
..+|.||..|...|.. |+||++.|+
T Consensus 22 ~~ME~Eieelr~RY~~KRqPIldAie 47 (49)
T PF11629_consen 22 PEMEQEIEELRQRYQAKRQPILDAIE 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHh
Confidence 4689999999888755 599999875
No 36
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.99 E-value=2.4e+02 Score=31.62 Aligned_cols=71 Identities=18% Similarity=0.274 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 59 AAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKI 137 (440)
Q Consensus 59 ~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L 137 (440)
.+..+.++..++..+..+++.|...|++-.. +-.+-++.++.++.+.+.+..+..+.++.++++++.+..+
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~--------~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l 505 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRV--------DITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKL 505 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhee--------ccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566677777777777777777766543 2334555555555555555555555555555555555444
No 37
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=64.26 E-value=3.2e+02 Score=32.90 Aligned_cols=68 Identities=19% Similarity=0.238 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 64 AQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKI 137 (440)
Q Consensus 64 ~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L 137 (440)
+++.+++..++.++..+...+...... ...-.+...+..+...++.++.....-..++.....+|..|
T Consensus 795 ~r~~~ei~~l~~qie~l~~~l~~~~~~------~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 795 ERFQMELKDVERKIAQQAAKLQGSDLD------RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccc------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334777777777777777777632211 11122444455555566666554444455555555555555
No 38
>PF12302 DUF3629: Protein of unknown function (DUF3629); InterPro: IPR022079 This family of proteins is found in eukaryotes. Proteins in this family are typically between 256 and 292 amino acids in length.
Probab=63.54 E-value=50 Score=30.04 Aligned_cols=85 Identities=16% Similarity=0.350 Sum_probs=58.9
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHhhhhhcCC-CCChHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhHHhHHHHHh
Q 013575 326 QGELEEIFARAHIEIDPVAAREKIMTLIDSG-NVEPAELLADMDNQIAKAKEEAHSRKEILDKVEKWMSACEEESWLEDY 404 (440)
Q Consensus 326 r~el~elWd~~~~~~eer~~f~~~~~~~~s~-~~~~eelL~~~E~Ei~rLk~~~~~~k~Il~~vek~~~l~~e~~~Lee~ 404 (440)
...|.++|....++..++.....+-+ .+++ +.++++++.+++. |.|.++.....+.+..++++ +.-.|+.-=||.
T Consensus 49 hdriq~mwq~srigakeqnslrgyqp-an~Dvn~ds~evISALdk-VRrieERRkiqnKMr~LMee--Q~~~DeriQEe~ 124 (253)
T PF12302_consen 49 HDRIQEMWQRSRIGAKEQNSLRGYQP-ANSDVNTDSEEVISALDK-VRRIEERRKIQNKMRALMEE--QHEKDERIQEEK 124 (253)
T ss_pred HHHHHHHHHHhccchhhhccccccCC-CccccccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 34788999999999988777654432 2332 3578888888875 56666666666777787764 234466666788
Q ss_pred hhhhhhhccc
Q 013575 405 NRVLRISLFL 414 (440)
Q Consensus 405 ~r~~~~~~~~ 414 (440)
.|++|..+..
T Consensus 125 Dr~irkevlv 134 (253)
T PF12302_consen 125 DRVIRKEVLV 134 (253)
T ss_pred hhHHHHHHhh
Confidence 8888887443
No 39
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=63.41 E-value=77 Score=28.26 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013575 156 ESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVL 199 (440)
Q Consensus 156 ~~~lS~e~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~l~~~L 199 (440)
..++|.+.+..+...+..|+.+...-...+..+..++..|...+
T Consensus 66 ~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~ 109 (169)
T PF07106_consen 66 LEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEP 109 (169)
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34678999999999999999988876666666666665554443
No 40
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=62.86 E-value=2e+02 Score=30.09 Aligned_cols=133 Identities=14% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 013575 40 MLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQ 119 (440)
Q Consensus 40 ~l~~l~~~~~~~~~~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~ 119 (440)
+|..|...+-+++..+.. .--+|..+.+.+..++.-++..-..|+.... ..-||.-+++.++..+-.|+.+
T Consensus 363 iinkLk~niEeLIedKY~-viLEKnd~~k~lqnLqe~la~tqk~LqEsr~--------eKetLqlelkK~k~nyv~LQEr 433 (527)
T PF15066_consen 363 IINKLKENIEELIEDKYR-VILEKNDIEKTLQNLQEALANTQKHLQESRN--------EKETLQLELKKIKANYVHLQER 433 (527)
T ss_pred HHHHHHHHHHHHHHhHhH-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hHHHHHHHHHHHhhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q 013575 120 KEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQ--------AQLQELQKEKSDRLHKVLEFVST 191 (440)
Q Consensus 120 k~~R~~~~~~l~~~i~~L~~~L~~~~~~~~~~~~~~~~~lS~e~L~~l~--------~~l~~L~~ek~~R~~~~~~l~~~ 191 (440)
+..-+++=....+.--.+-..|+.... -.++|..++ +.|+.|+.||+.|-..|.++..+
T Consensus 434 y~~eiQqKnksvsqclEmdk~LskKee-------------everLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeE 500 (527)
T PF15066_consen 434 YMTEIQQKNKSVSQCLEMDKTLSKKEE-------------EVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEE 500 (527)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhhHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 013575 192 VHD 194 (440)
Q Consensus 192 I~~ 194 (440)
.+.
T Consensus 501 fQk 503 (527)
T PF15066_consen 501 FQK 503 (527)
T ss_pred HHH
No 41
>PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with PF00225 from PFAM. This domain is found associated with PF00225 from PFAM. This domain has two conserved sequence motifs: EVE and ESA.
Probab=62.01 E-value=1.2e+02 Score=27.03 Aligned_cols=123 Identities=15% Similarity=0.133 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHhHHHHhcccccc-----------------ccC-----CCCCCCchHHHHHHHHHHHH
Q 013575 251 LQELATQLIDLWNLMDTPSEERRLFDHVTCNISAY-----------------VDG-----VTVPGALALDLIEQAEVEVE 308 (440)
Q Consensus 251 ~~~l~~~l~~LW~~L~i~~ee~~~F~~~~~~i~~s-----------------~~~-----~~~~~~lS~~~l~~~e~El~ 308 (440)
+...+.+|.+||..|++|--.|.-|--...|=.+. ... .+++...-..++.++..|-+
T Consensus 2 Fe~qq~~IIeLW~~C~VsLvHRTyFfLLFkGdpaD~iYmEVElRRLs~Lk~~fs~~~~~~~~~~~~s~~sS~kaL~rER~ 81 (161)
T PF11995_consen 2 FERQQQEIIELWHACNVSLVHRTYFFLLFKGDPADSIYMEVELRRLSFLKETFSEGGQAAGGGHTLSLASSIKALRRERE 81 (161)
T ss_pred hHHHHHHHHHHHHhcCcchhhhhhhhheecCCcccceEEEeehHHHHHHHHHhccCCcccCCCCcccHHHHHHHHHHHHH
Confidence 34577899999999999988888775444332100 000 01122333457777777766
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCcchHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHHHHh
Q 013575 309 RLDQLKASRMKEIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHS 380 (440)
Q Consensus 309 RL~~lK~~~lk~li~~~r~el~elWd~~~~~~eer~~f~~~~~~~~s~~~~~eelL~~~E~Ei~rLk~~~~~ 380 (440)
-|-..-.. +| .+.+-+.++-+-+++.+.++....+...+=++-.|.+-+-+.. .-|++|-.+.+.
T Consensus 82 ~L~k~m~~---rl---s~eere~ly~kWgI~l~sK~RrlQL~~~LWt~~~d~~Hv~eSA-~lVAkLvgf~e~ 146 (161)
T PF11995_consen 82 MLAKQMQK---RL---SREEREELYKKWGIPLDSKQRRLQLANRLWTDTKDMEHVRESA-ELVAKLVGFVEP 146 (161)
T ss_pred HHHHHHHH---hC---CHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCcchHHHHHHHH-HHHHHHHhhccc
Confidence 65322221 22 3567777999999999887666555544434322333222222 235555555443
No 42
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=60.95 E-value=2.2e+02 Score=29.90 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHcCCC
Q 013575 297 LDLIEQAEVEVERLDQLKASRM---KEIAFKRQGELEEIFARAHIE 339 (440)
Q Consensus 297 ~~~l~~~e~El~RL~~lK~~~l---k~li~~~r~el~elWd~~~~~ 339 (440)
..-++.++.||+.|.-+-+..| ..+|.+++-++.++-..|.+-
T Consensus 532 ~~E~eklE~el~~lnL~s~ts~l~~eq~vqs~~i~ld~~~~~~n~~ 577 (622)
T COG5185 532 RIEIEKLEKELNDLNLLSKTSILDAEQLVQSTEIKLDELKVDLNRK 577 (622)
T ss_pred HHHHHHHHHHHHHhhhhccchHhhHHHHHHHHHhhHHHHHHHHHHH
Confidence 3456777888877776554433 355666777777776666554
No 43
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=60.88 E-value=1.5e+02 Score=27.93 Aligned_cols=44 Identities=25% Similarity=0.418 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 013575 99 SGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIA 142 (440)
Q Consensus 99 ~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~ 142 (440)
-+-+++.+..++.+++++.++|.+.++++..+..+.......|.
T Consensus 130 ~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk 173 (290)
T COG4026 130 YMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLK 173 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44688888999999999999999999988888887766655443
No 44
>PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with PF00225 from PFAM. This domain is found associated with PF00225 from PFAM. This domain has two conserved sequence motifs: EVE and ESA.
Probab=60.28 E-value=6.2 Score=34.83 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHcCCCcchHHHHH
Q 013575 323 FKRQGELEEIFARAHIEIDPVAARE 347 (440)
Q Consensus 323 ~~~r~el~elWd~~~~~~eer~~f~ 347 (440)
.+.|.+|-+||+.|++|--.|..|-
T Consensus 3 e~qq~~IIeLW~~C~VsLvHRTyFf 27 (161)
T PF11995_consen 3 ERQQQEIIELWHACNVSLVHRTYFF 27 (161)
T ss_pred HHHHHHHHHHHHhcCcchhhhhhhh
Confidence 4579999999999999999988773
No 45
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=58.88 E-value=1.1e+02 Score=25.89 Aligned_cols=83 Identities=16% Similarity=0.246 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 013575 41 LLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQK 120 (440)
Q Consensus 41 l~~l~~~~~~~~~~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k 120 (440)
|..++-++ ..++..+......|+.+..+|..+..+...+....... ..|..+++.+..+++.+..-.
T Consensus 25 lr~~E~E~-~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~------------~~L~~el~~l~~ry~t~Lell 91 (120)
T PF12325_consen 25 LRRLEGEL-ASLQEELARLEAERDELREEIVKLMEENEELRALKKEV------------EELEQELEELQQRYQTLLELL 91 (120)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHh
Confidence 33443333 24455666666666666666666555555443222211 134455555555555555544
Q ss_pred HHHHHHHHHHHHHHHH
Q 013575 121 EERVKEFSDVQSQIQK 136 (440)
Q Consensus 121 ~~R~~~~~~l~~~i~~ 136 (440)
-++-.++.+++..+..
T Consensus 92 GEK~E~veEL~~Dv~D 107 (120)
T PF12325_consen 92 GEKSEEVEELRADVQD 107 (120)
T ss_pred cchHHHHHHHHHHHHH
Confidence 4444444555444444
No 46
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=58.17 E-value=2e+02 Score=28.61 Aligned_cols=90 Identities=11% Similarity=0.001 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-C---CCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 013575 54 RKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAG-L---GIPEKTSGTIKEQLAAIAP--ALEQLWKQKEERVKEF 127 (440)
Q Consensus 54 ~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~-~---~~~~~~~~sL~~~l~~l~~--~le~l~~~k~~R~~~~ 127 (440)
++++--.--..+|.+.|.+.+..+..+-.++-..+++. . -.++.....+..++..+++ +++.-...+.=|++.+
T Consensus 63 P~LElY~~sC~EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~lvK~~aRl~ak~~WYeWR~kll 142 (312)
T smart00787 63 PLLELYQFSCKELKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQLVKTFARLEAKKMWYEWRMKLL 142 (312)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666777888999999999999988886443221 0 1134445566666676665 6777788888899999
Q ss_pred HHHHHHHHHHHhHhcC
Q 013575 128 SDVQSQIQKICGEIAG 143 (440)
Q Consensus 128 ~~l~~~i~~L~~~L~~ 143 (440)
..++..+..-...|-.
T Consensus 143 egLk~~L~~~~~~l~~ 158 (312)
T smart00787 143 EGLKEGLDENLEGLKE 158 (312)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9998888776665544
No 47
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=57.81 E-value=1.7e+02 Score=27.73 Aligned_cols=102 Identities=19% Similarity=0.301 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 52 YKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQ 131 (440)
Q Consensus 52 ~~~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~ 131 (440)
++.++.+..+.++++.++++.+..+- .-+..|+...+.|..+|.....++..+.
T Consensus 6 ir~K~~~lek~k~~i~~e~~~~e~ee--------------------------~~L~e~~kE~~~L~~Er~~h~eeLrqI~ 59 (230)
T PF10146_consen 6 IRNKTLELEKLKNEILQEVESLENEE--------------------------KCLEEYRKEMEELLQERMAHVEELRQIN 59 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777776665532 2467788888888888888888888888
Q ss_pred HHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCC
Q 013575 132 SQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGV-LGMD 202 (440)
Q Consensus 132 ~~i~~L~~~L~~~~~~~~~~~~~~~~~lS~e~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~l~~~-L~~~ 202 (440)
..|..+-..+.. +....+..+..+..+..+|. -++..|..+-.. +|++
T Consensus 60 ~DIn~lE~iIkq----------------a~~er~~~~~~i~r~~eey~-------~Lk~~in~~R~e~lgl~ 108 (230)
T PF10146_consen 60 QDINTLENIIKQ----------------AESERNKRQEKIQRLYEEYK-------PLKDEINELRKEYLGLE 108 (230)
T ss_pred HHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHcCCC
Confidence 888776444332 23334445555555555555 556666666666 8875
No 48
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=57.43 E-value=3.7e+02 Score=31.41 Aligned_cols=36 Identities=8% Similarity=0.092 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 163 KLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGV 198 (440)
Q Consensus 163 ~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~l~~~ 198 (440)
.+..++..+..++.+...-...+..+...+..+-..
T Consensus 799 ~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e 834 (1164)
T TIGR02169 799 ELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKE 834 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555544444444444444444333
No 49
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.99 E-value=2.5e+02 Score=29.69 Aligned_cols=90 Identities=12% Similarity=0.154 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 013575 47 ECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSAL-G--EKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEER 123 (440)
Q Consensus 47 ~~~~~~~~~vee~~~~k~~l~~~i~~~~~el~~L~~eL-g--~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R 123 (440)
..++.+.+.|.++.+.-..-...|+..+..+.+|...+ . ..... ....+.+|.--++.|+.+++.|..+.+.=
T Consensus 355 ~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqei----lr~~G~~L~~~EE~Lr~Kldtll~~ln~P 430 (508)
T KOG3091|consen 355 IRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEI----LRKRGYALTPDEEELRAKLDTLLAQLNAP 430 (508)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhccCCcCCccHHHHHHHHHHHHHHhcCh
Confidence 44556667777777666677777888887777776644 1 11111 12344555555777777777777654433
Q ss_pred HHHHHHHHHHHHHHHhHhcCC
Q 013575 124 VKEFSDVQSQIQKICGEIAGN 144 (440)
Q Consensus 124 ~~~~~~l~~~i~~L~~~L~~~ 144 (440)
.+++..+..|.+.+-..
T Consensus 431 ----nq~k~Rl~~L~e~~r~q 447 (508)
T KOG3091|consen 431 ----NQLKARLDELYEILRMQ 447 (508)
T ss_pred ----HHHHHHHHHHHHHHHhh
Confidence 34444444444444433
No 50
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.98 E-value=82 Score=30.52 Aligned_cols=84 Identities=17% Similarity=0.242 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013575 101 TIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSD 180 (440)
Q Consensus 101 sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~~~~~~~~~~~~~lS~e~L~~l~~~l~~L~~ek~~ 180 (440)
++-+....=...+..+.+.+..-..++..+..++..+...+....... +=+...+..|+..|..++....+
T Consensus 28 ~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i---------~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 28 LLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEI---------DQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444446677778888888888888888888888888877665544322 33888999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 013575 181 RLHKVLEFVSTVH 193 (440)
Q Consensus 181 R~~~~~~l~~~I~ 193 (440)
|...|..-...++
T Consensus 99 r~~~l~~raRAmq 111 (265)
T COG3883 99 RQELLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHHHH
Confidence 9997776666554
No 51
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=54.76 E-value=4.1e+02 Score=31.07 Aligned_cols=31 Identities=10% Similarity=0.180 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 163 KLDEYQAQLQELQKEKSDRLHKVLEFVSTVH 193 (440)
Q Consensus 163 ~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~ 193 (440)
.+..++..+..++.+...-...+..+...+.
T Consensus 806 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~ 836 (1164)
T TIGR02169 806 EVSRIEARLREIEQKLNRLTLEKEYLEKEIQ 836 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333333333333333
No 52
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=52.94 E-value=2.4e+02 Score=27.83 Aligned_cols=83 Identities=17% Similarity=0.214 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCC-----------CCCCCCCCCHHHHHHHHH
Q 013575 101 TIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQA-----------PSVDESDLTLKKLDEYQA 169 (440)
Q Consensus 101 sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~~~~~~-----------~~~~~~~lS~e~L~~l~~ 169 (440)
++..+.+.+..++.+++..+.+--..+..+...+..+-...+.....+.+. .-.-..++|++.=..+-.
T Consensus 59 elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq 138 (294)
T COG1340 59 ELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQ 138 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 556667777777777777766666666666666666655444221100000 000134667776667777
Q ss_pred HHHHHHHHHHHHHH
Q 013575 170 QLQELQKEKSDRLH 183 (440)
Q Consensus 170 ~l~~L~~ek~~R~~ 183 (440)
.+..|++++..+..
T Consensus 139 ~I~~L~k~le~~~k 152 (294)
T COG1340 139 KIKELRKELEDAKK 152 (294)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777766654
No 53
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=51.58 E-value=3.3e+02 Score=29.00 Aligned_cols=80 Identities=20% Similarity=0.193 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhHHHHhccccccccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 013575 234 AKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQL 313 (440)
Q Consensus 234 ~~~~~~L~~~K~~r~~~~~~l~~~l~~LW~~L~i~~ee~~~F~~~~~~i~~s~~~~~~~~~lS~~~l~~~e~El~RL~~l 313 (440)
.+.+.+++++-..-+.++.++..++. .+.+..+++...+..+ .+.=+.+.+|+.-|+..
T Consensus 225 t~el~~q~Ee~skLlsql~d~qkk~k----~~~~Ekeel~~~Lq~~-----------------~da~~ql~aE~~EleDk 283 (596)
T KOG4360|consen 225 TKELSRQQEENSKLLSQLVDLQKKIK----YLRHEKEELDEHLQAY-----------------KDAQRQLTAELEELEDK 283 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHH-----------------HhhHHHHHHHHHHHHHH
Confidence 33333333433333344433333332 2344455666666554 45667889999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHH
Q 013575 314 KASRMKEIAFKRQGELEEIFAR 335 (440)
Q Consensus 314 K~~~lk~li~~~r~el~elWd~ 335 (440)
+.+-|..|-+ +..+|..+-..
T Consensus 284 yAE~m~~~~E-aeeELk~lrs~ 304 (596)
T KOG4360|consen 284 YAECMQMLHE-AEEELKCLRSC 304 (596)
T ss_pred HHHHHHHHHH-HHHHHHhhccC
Confidence 9999999986 88888877554
No 54
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=50.59 E-value=2.7e+02 Score=27.76 Aligned_cols=39 Identities=15% Similarity=0.291 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013575 161 LKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVL 199 (440)
Q Consensus 161 ~e~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~l~~~L 199 (440)
.+.|..++..+..+..+...+...+.++..++..+-..+
T Consensus 208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i 246 (325)
T PF08317_consen 208 QEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKI 246 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555544444443
No 55
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=50.23 E-value=2.7e+02 Score=28.39 Aligned_cols=83 Identities=10% Similarity=0.139 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 49 LDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFS 128 (440)
Q Consensus 49 ~~~~~~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~ 128 (440)
...+...+.+.+...+++..+|....+.|..--.-|+..-. ++.+.+...+.++.+.+.++.+.-.-+.
T Consensus 229 ~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle-----------~l~~eYr~~~~~ls~~~~~y~~~s~~V~ 297 (359)
T PF10498_consen 229 KKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLE-----------PLIQEYRSAQDELSEVQEKYKQASEGVS 297 (359)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 45566777888888888888888888877776666654322 3444445555555555554444444444
Q ss_pred HHHHHHHHHHhHhc
Q 013575 129 DVQSQIQKICGEIA 142 (440)
Q Consensus 129 ~l~~~i~~L~~~L~ 142 (440)
....++..|.+.|.
T Consensus 298 ~~t~~L~~IseeLe 311 (359)
T PF10498_consen 298 ERTRELAEISEELE 311 (359)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 56
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=49.66 E-value=2.8e+02 Score=27.74 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=69.7
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCC
Q 013575 77 LASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDE 156 (440)
Q Consensus 77 l~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~~~~~~~~~~~ 156 (440)
-..+....|..|. +..-..+|...+..|+..++.....=..-...|......+.-||............ ++...
T Consensus 109 d~~~R~k~G~~~~-----S~~~~~~l~~~~~k~~~~L~~A~~sD~~l~~~~~~~~~~l~lL~~~~~~l~~~iPs-~~~~~ 182 (337)
T cd09234 109 EKEFQEAVGKRGS-----SIAHVTELKRELKKYKEAHEKASQSNTELHKAMNLHIANLKLLAGPLDELQKKLPS-PSLLD 182 (337)
T ss_pred HHHHHHHcCCCCC-----chhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHhhCCC-ccccC
Confidence 3445556665422 22336689999999999999888877777777777776666665421100000000 01111
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 157 SDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVH 193 (440)
Q Consensus 157 ~~lS~e~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~ 193 (440)
.+.....+..|+..+..+..-+.+|...+..++..++
T Consensus 183 ~~~~~~~v~~Lr~ll~kl~~lk~eR~~l~~~Lk~k~~ 219 (337)
T cd09234 183 RPEDEAIEKELKRILNKVNEMRKQRRSLEQQLRDAIH 219 (337)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1124567888999999999999999988888877644
No 57
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=48.96 E-value=4.3e+02 Score=29.62 Aligned_cols=38 Identities=8% Similarity=0.174 Sum_probs=27.2
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 221 QSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQL 258 (440)
Q Consensus 221 ~~~~ls~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l 258 (440)
.+..++......++..+.+.-+.-.+-.++++.+...+
T Consensus 678 ~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~ 715 (717)
T PF10168_consen 678 KSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKKIV 715 (717)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34678888899988888877776666666666555443
No 58
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=48.67 E-value=3.5e+02 Score=28.53 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=42.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCC
Q 013575 292 PGALALDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFARAHIE 339 (440)
Q Consensus 292 ~~~lS~~~l~~~e~El~RL~~lK~~~lk~li~~~r~el~elWd~~~~~ 339 (440)
|..+|..-+..|.+.+..|..-=...+..+..+.|..-+..|+.|.--
T Consensus 236 Pp~~t~~~v~eW~~~l~~l~~~~d~~~~~~~~~lr~~~E~~~~ec~~~ 283 (473)
T PF14643_consen 236 PPNLTKEKVEEWYASLNALNEQIDEYHQQCMEKLRALYEKICQECLAL 283 (473)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778889999999999999999999999999999999999988543
No 59
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=48.29 E-value=2.7e+02 Score=31.38 Aligned_cols=157 Identities=17% Similarity=0.125 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHhHHHHhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHH
Q 013575 251 LQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKE--IAFKRQGE 328 (440)
Q Consensus 251 ~~~l~~~l~~LW~~L~i~~ee~~~F~~~~~~i~~s~~~~~~~~~lS~~~l~~~e~El~RL~~lK~~~lk~--li~~~r~e 328 (440)
...|+-+++.+-.-|.|=.+||+-=.....-.+ ...-=|..-|.++++|-+||+.|=+.+++- -+.+-+.+
T Consensus 150 n~~Lkye~~~~~keleir~~E~~~~~~~ae~a~-------kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~e 222 (769)
T PF05911_consen 150 NSSLKYELHVLSKELEIRNEEREYSRRAAEAAS-------KQHLESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNE 222 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHH
Confidence 344666777777777777777653332211000 001113557899999999999999988873 33567778
Q ss_pred HHHHHHHcCCCcchHHHHHH-----hhhhhcC-----CCCChHHHHHHHHHHHHHHHHHHHhchH-------HHHHHHHH
Q 013575 329 LEEIFARAHIEIDPVAAREK-----IMTLIDS-----GNVEPAELLADMDNQIAKAKEEAHSRKE-------ILDKVEKW 391 (440)
Q Consensus 329 l~elWd~~~~~~eer~~f~~-----~~~~~~s-----~~~~~eelL~~~E~Ei~rLk~~~~~~k~-------Il~~vek~ 391 (440)
++.+=....-+ --|..... .+..-.. ...+-.+-|..+|.|.+.||+-.+.+-. ++..-.-.
T Consensus 223 v~~~~~~~~~~-r~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~k 301 (769)
T PF05911_consen 223 VESLGRDSGEN-RRRRSPSRPSSPHDFSPQNPQKRSKESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASK 301 (769)
T ss_pred HHHhccccccc-cCCCCCCcccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77662221111 10110000 0000000 0123445667899999999998887733 33332222
Q ss_pred HHHhHHhHHHHHhhhhhhhhcccccccCc
Q 013575 392 MSACEEESWLEDYNRVLRISLFLPLSFPV 420 (440)
Q Consensus 392 ~~l~~e~~~Lee~~r~~~~~~~~~~~~~~ 420 (440)
.+.++-+ | ++| .+.++.+|.+.++
T Consensus 302 L~~~e~q--l-~~~--~~~~~e~~~s~~~ 325 (769)
T PF05911_consen 302 LSQLEAQ--L-KSS--GQVSMELSSSQNT 325 (769)
T ss_pred HHHHHHH--H-HHh--hccccccccccCC
Confidence 2333323 3 444 4456666666655
No 60
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=47.75 E-value=3.9e+02 Score=28.86 Aligned_cols=123 Identities=21% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 52 YKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQ 131 (440)
Q Consensus 52 ~~~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~ 131 (440)
++..+.+.....+...-++.+...++....+.+..+|. .++.+..++..++.-+..=-..+.++.
T Consensus 260 ~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~---------------~L~~ve~Rl~~L~~l~RKY~~~~~~l~ 324 (557)
T COG0497 260 YDGKLSELAELLEEALYELEEASEELRAYLDELEFDPN---------------RLEEVEERLFALKSLARKYGVTIEDLL 324 (557)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHH---------------HHHHHHHHHHHHHHHHHHhCCCHHHHH
Q ss_pred HHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhCCC
Q 013575 132 SQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEK--------SDRLHKVLEFVSTVHDLCGVLGMD 202 (440)
Q Consensus 132 ~~i~~L~~~L~~~~~~~~~~~~~~~~~lS~e~L~~l~~~l~~L~~ek--------~~R~~~~~~l~~~I~~l~~~L~~~ 202 (440)
.....+-.+|..-.. +.+.++.|+..+..++.++ ..|.+....+...|..-...|++.
T Consensus 325 ~~~~~~~~el~~L~~-------------~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~v~~eL~~L~Me 390 (557)
T COG0497 325 EYLDKIKEELAQLDN-------------SEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEVTAELKALAME 390 (557)
T ss_pred HHHHHHHHHHHHhhh-------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
No 61
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=47.66 E-value=5.1e+02 Score=30.17 Aligned_cols=22 Identities=9% Similarity=0.356 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHcCCC
Q 013575 318 MKEIAFKRQGELEEIFARAHIE 339 (440)
Q Consensus 318 lk~li~~~r~el~elWd~~~~~ 339 (440)
+..-|++...+...+-..|-+.
T Consensus 882 ~es~ie~~~~er~~lL~~ckl~ 903 (1141)
T KOG0018|consen 882 IESKIERKESERHNLLSKCKLE 903 (1141)
T ss_pred hhhHHHHHHHHHHHHHHHhhhc
Confidence 3455555666666666666554
No 62
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=47.63 E-value=85 Score=25.60 Aligned_cols=76 Identities=16% Similarity=0.343 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 55 KVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQI 134 (440)
Q Consensus 55 ~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i 134 (440)
.+-+....+..+...+..++++-+.+...+|.....+ ...-.|..+.+.+..++..+. .++..+.+++
T Consensus 30 ~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~-----~~~~~l~~e~~~lk~~i~~le-------~~~~~~e~~l 97 (108)
T PF02403_consen 30 EIIELDQERRELQQELEELRAERNELSKEIGKLKKAG-----EDAEELKAEVKELKEEIKELE-------EQLKELEEEL 97 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT-----CCTHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc-----ccHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 4445566677889999999999999999998765431 234455555566666555555 4555566666
Q ss_pred HHHHhHhc
Q 013575 135 QKICGEIA 142 (440)
Q Consensus 135 ~~L~~~L~ 142 (440)
..++..|.
T Consensus 98 ~~~l~~iP 105 (108)
T PF02403_consen 98 NELLLSIP 105 (108)
T ss_dssp HHHHCTS-
T ss_pred HHHHHcCC
Confidence 66655443
No 63
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=47.62 E-value=2.6e+02 Score=26.73 Aligned_cols=117 Identities=15% Similarity=0.147 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhCCChHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Q 013575 20 LHKLQEIWDEVGENDEER---DKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPE 96 (440)
Q Consensus 20 l~~L~~IW~eiG~~~~er---~~~l~~l~~~~~~~~~~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~ 96 (440)
|..|+.|-.++---...+ .+.+..+.. -.+.++..+...+.....+..++..++.+++.+...+.....-
T Consensus 9 L~~iq~lD~e~~rl~~~~~~~~~~l~k~~~-e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~k------ 81 (239)
T COG1579 9 LLAIQKLDLEKDRLEPRIKEIRKALKKAKA-ELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEK------ 81 (239)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 555666655553332222 122222222 2334455666666666666777777777776666666544332
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcC
Q 013575 97 KTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAG 143 (440)
Q Consensus 97 ~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~ 143 (440)
-..++-..+++.|...++.++.+......++..+...+..+...+..
T Consensus 82 l~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~ 128 (239)
T COG1579 82 LSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIED 128 (239)
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13445556788888888888888888777777777777777665443
No 64
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=46.59 E-value=1.3e+02 Score=22.96 Aligned_cols=57 Identities=28% Similarity=0.305 Sum_probs=36.1
Q ss_pred cHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Q 013575 15 TCSSLLHKLQEIWDEVGENDEERDKMLLQIEKECLDVYK------RKVEQAAKSRAQLLQALS 71 (440)
Q Consensus 15 ~~~~~l~~L~~IW~eiG~~~~er~~~l~~l~~~~~~~~~------~~vee~~~~k~~l~~~i~ 71 (440)
..-++|.-|+.=||.|-.+...-.+.+.+..+++...+. +++..+-++++.....++
T Consensus 5 SIP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~ 67 (70)
T PF08606_consen 5 SIPSLLSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALA 67 (70)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH
Confidence 344689999999999998877655556666666654442 344544455555444443
No 65
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=46.31 E-value=5.4e+02 Score=30.02 Aligned_cols=14 Identities=29% Similarity=0.313 Sum_probs=8.9
Q ss_pred HHHHHHHHHHcCCC
Q 013575 326 QGELEEIFARAHIE 339 (440)
Q Consensus 326 r~el~elWd~~~~~ 339 (440)
..-|..+-+.++++
T Consensus 533 ~~~Lr~i~~~~~~~ 546 (1074)
T KOG0250|consen 533 ARILRAIMRRLKIP 546 (1074)
T ss_pred HHHHHHHHHHcCCC
Confidence 44566667777766
No 66
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=45.56 E-value=3.3e+02 Score=27.31 Aligned_cols=131 Identities=11% Similarity=0.116 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 53 KRKVEQAAKSRAQLLQALSDAKI-------ELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVK 125 (440)
Q Consensus 53 ~~~vee~~~~k~~l~~~i~~~~~-------el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~ 125 (440)
...+.+....+.+....+..+.. +...+....|.. ..+ +.+..-..+|...+..|+..++.....=..-..
T Consensus 75 ~~~l~~L~~l~~~~~~~L~e~~~~Ld~E~~ed~~~R~k~g~~-Wtr-~pS~~~~~~l~~~~~kyr~~L~~A~~sD~~v~~ 152 (339)
T cd09235 75 DQLIKELPELLQRNREILDEALRMLDEEEASDNQLRAQFKER-WTR-TPSNKLTKPLRAEGSKYRTILDNAVQADKIVRE 152 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCc-CCC-CChHHHhHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34444444444444333333333 334566666652 222 112223457888899999999998888888888
Q ss_pred HHHHHHHHHHHHHhH---hc-CCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 126 EFSDVQSQIQKICGE---IA-GNLSLGDQAPSVDESDL-TLKKLDEYQAQLQELQKEKSDRLHKVLEFVST 191 (440)
Q Consensus 126 ~~~~l~~~i~~L~~~---L~-~~~~~~~~~~~~~~~~l-S~e~L~~l~~~l~~L~~ek~~R~~~~~~l~~~ 191 (440)
.|......+.-||.- |. ..|... ....+ ....+..|+..+..+..-+.+|.....+++..
T Consensus 153 k~~~~~~~l~lLs~~~~~l~~~lPss~------~~~~~~~~~~v~~Lr~~l~~l~~lk~eR~~~~~~Lk~~ 217 (339)
T cd09235 153 KYESHREGIELLSKPEEELANAIPSAS------PAKTLQGSEAVQELRQLMEQVETIKAEREVIESELKSA 217 (339)
T ss_pred HHHHHHHHHHHHcCCHHHHHHhCCCCC------CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888877666542 21 112110 01122 34578888999999998888888876666443
No 67
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=44.49 E-value=1.6e+02 Score=26.40 Aligned_cols=96 Identities=8% Similarity=0.125 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCc---ccccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHH-HH
Q 013575 175 QKEKSDRLHKVLEFVSTVHDLCGVLGMDF---FSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRL-HK 250 (440)
Q Consensus 175 ~~ek~~R~~~~~~l~~~I~~l~~~L~~~~---~~~~~e~~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L~~~K~~r~-~~ 250 (440)
-..+.+|..++.++...+..|-+++.... .+....+ +...=..+...+....+.-..+. ..
T Consensus 20 a~~~~~R~~~L~~l~~~l~~L~~EI~Y~~tpL~ea~~~i---------------~~~~~~~~~~~f~~~a~~L~~~~g~s 84 (170)
T TIGR02833 20 ANRFKERPRQLRQLINALQSLEAEIVYGHTPLPEAFKKI---------------ALKSPKPVNLLFESASERLKEGEGLT 84 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHH---------------HhhcchhHHHHHHHHHHHHHhCCCCC
Confidence 35678899999999999999999998532 1111111 11111122222222222222222 33
Q ss_pred HHH-HHHHHHHHHHhcCCCHHHHHhHHHHhcccccc
Q 013575 251 LQE-LATQLIDLWNLMDTPSEERRLFDHVTCNISAY 285 (440)
Q Consensus 251 ~~~-l~~~l~~LW~~L~i~~ee~~~F~~~~~~i~~s 285 (440)
+.+ ....+..+|..+...+++++.+...-..++.|
T Consensus 85 ~~~~w~~~~~~~~~~~~L~~~d~eiL~~lG~~LG~~ 120 (170)
T TIGR02833 85 VYEAWKKALNEVWKQTALQKSEKEILLQFGKTLGES 120 (170)
T ss_pred HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCcC
Confidence 444 66778889999999999999998877666643
No 68
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=44.40 E-value=1.6e+02 Score=26.56 Aligned_cols=96 Identities=9% Similarity=0.126 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCc---ccccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHH-HH
Q 013575 175 QKEKSDRLHKVLEFVSTVHDLCGVLGMDF---FSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRL-HK 250 (440)
Q Consensus 175 ~~ek~~R~~~~~~l~~~I~~l~~~L~~~~---~~~~~e~~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L~~~K~~r~-~~ 250 (440)
-..+.+|..++.++...+..|-+++.... .+....+ +...=..+...+....+.-..+. ..
T Consensus 21 a~~~~~R~~~L~~l~~~l~~L~~EI~Y~~tpL~ea~~~i---------------~~~~~~~~~~~f~~~a~~L~~~~g~s 85 (171)
T PRK08307 21 AKRYKERPRQLRELKAALQSLEAEIMYGHTPLPEALENI---------------AKQSPKPISTLFQRFSERLESGEGET 85 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHH---------------HHccchhHHHHHHHHHHHHHhCCCCC
Confidence 35678899999999999999999998532 1111111 00111112222222222222221 23
Q ss_pred HHH-HHHHHHHHHHhcCCCHHHHHhHHHHhcccccc
Q 013575 251 LQE-LATQLIDLWNLMDTPSEERRLFDHVTCNISAY 285 (440)
Q Consensus 251 ~~~-l~~~l~~LW~~L~i~~ee~~~F~~~~~~i~~s 285 (440)
+.+ ....+..+|..+..++++++.+...-..++.|
T Consensus 86 ~~eaw~~~~~~~~~~~~L~~~d~eiL~~lg~~LG~~ 121 (171)
T PRK08307 86 AYEAWEKALEENWKNTALKKEDIEILLQFGKTLGQS 121 (171)
T ss_pred HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCcC
Confidence 333 66788899999999999999998877666643
No 69
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=44.17 E-value=62 Score=29.69 Aligned_cols=86 Identities=20% Similarity=0.320 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 013575 99 SGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEK 178 (440)
Q Consensus 99 ~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~~~~~~~~~~~~~lS~e~L~~l~~~l~~L~~ek 178 (440)
..++..++..++..+.++.+.+.+..+.+..+...+..+-..+. --...|..+...+..|+.+.
T Consensus 69 ~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~----------------~~~~~l~~l~~~~~~L~~~~ 132 (194)
T PF08614_consen 69 ISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELS----------------EKERRLAELEAELAQLEEKI 132 (194)
T ss_dssp -------------------------------------------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhHH----------------HHHHHHHHHHHHHHHHHHHH
Confidence 34556667777778888888777766666665555544322111 13567888888899998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC
Q 013575 179 SDRLHKVLEFVSTVHDLCGVLG 200 (440)
Q Consensus 179 ~~R~~~~~~l~~~I~~l~~~L~ 200 (440)
..+...+.+....+..+-+++.
T Consensus 133 ~~l~~~l~ek~k~~e~l~DE~~ 154 (194)
T PF08614_consen 133 KDLEEELKEKNKANEILQDELQ 154 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888877777765
No 70
>PF06260 DUF1024: Protein of unknown function (DUF1024); InterPro: IPR009368 This entry is represented by Bacteriophage 92, Orf64. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical proteins from Staphylococcus aureus, which are related to Orf64 from Staphylococcus phage 92 (Bacteriophage 92). The function of this family is unknown.
Probab=44.02 E-value=1.2e+02 Score=23.62 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=42.8
Q ss_pred hhcCCCCChHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhHHhHHHHHhhhhhhhhc
Q 013575 352 LIDSGNVEPAELLADMDNQIAKAKEEAHSRKEILDKVEKWMSACEEESWLEDYNRVLRISL 412 (440)
Q Consensus 352 ~~~s~~~~~eelL~~~E~Ei~rLk~~~~~~k~Il~~vek~~~l~~e~~~Lee~~r~~~~~~ 412 (440)
..++| .|++-||..+|.--++++.+=...+.+.. .|+...++-..|++.+-.++.-+
T Consensus 15 say~g-~dte~llkEiedVYKKAqaFDeI~e~~~~---~~~~~~~~~~~ldea~~im~~q~ 71 (82)
T PF06260_consen 15 SAYNG-NDTEGLLKEIEDVYKKAQAFDEILEDINN---QIQEYRKEDIELDEAVGIMVEQV 71 (82)
T ss_pred hhccC-CchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcccchHHHHHHHHHHH
Confidence 33456 48999999999999998888887777776 66666666777888776665443
No 71
>PF13514 AAA_27: AAA domain
Probab=42.63 E-value=6.4e+02 Score=29.80 Aligned_cols=186 Identities=16% Similarity=0.187 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 54 RKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAG-LGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQS 132 (440)
Q Consensus 54 ~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~-~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~ 132 (440)
..+.........+..++.....++..++..|| |.... .+.....+.....+...+......+.........++.....
T Consensus 296 ~~~~~~~~dl~~~~~e~~~~~~~~~~~~~~lg-~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~l~~~~~ 374 (1111)
T PF13514_consen 296 GEYRKARQDLPRLEAELAELEAELRALLAQLG-PDWDEEDLEALDPSLAARERIRELLQEREQLEQALAQARRELEEAER 374 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcccchhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777788889999999999999999999 43111 00112234455566777777777777777777778888888
Q ss_pred HHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccC
Q 013575 133 QIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHP 212 (440)
Q Consensus 133 ~i~~L~~~L~~~~~~~~~~~~~~~~~lS~e~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~l~~~L~~~~~~~~~e~~~ 212 (440)
.+..+...+...|...+ ...-...+...... ..+..........+......+..-...||. ....+....
T Consensus 375 ~~~~~~~~~~~l~~~~~-------~~~l~~al~~~~~~-~d~~~~~~~~~~~~~~~~~~l~~~l~~L~~-w~~~~~~l~- 444 (1111)
T PF13514_consen 375 ELEQLQAELAALPAPPD-------PEALRAALEAAQRL-GDLEARLQEAEQALEAAERRLAAALAALGP-WSGDLDALA- 444 (1111)
T ss_pred HHHHHHHHHhhCcccCC-------ChHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCChHHHh-
Confidence 88888777776554221 01112222222221 123334444555555666777777777772 111111110
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 213 SLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQL 258 (440)
Q Consensus 213 sl~~~~~~~~~~ls~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l 258 (440)
.--.++...+..+......+......-...+..+...+
T Consensus 445 --------~~~~P~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1111)
T PF13514_consen 445 --------ALPLPSRETVEAFRAEFEELERQLRRARDRLEELEEEL 482 (1111)
T ss_pred --------ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223666777777666666665555554444444433
No 72
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=41.99 E-value=1.9e+02 Score=30.13 Aligned_cols=41 Identities=24% Similarity=0.456 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHH--HHHHHHhHHhHHHH
Q 013575 362 ELLADMDNQIAKAKEEAHSRKEILDKV--EKWMSACEEESWLE 402 (440)
Q Consensus 362 elL~~~E~Ei~rLk~~~~~~k~Il~~v--ek~~~l~~e~~~Le 402 (440)
.-+.....++..++.++..-||++..+ .+.+..|+|+.||.
T Consensus 253 kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~ 295 (424)
T PF03915_consen 253 KDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFLK 295 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788899999999999999999998 77889999999983
No 73
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.82 E-value=1.2e+02 Score=28.37 Aligned_cols=69 Identities=16% Similarity=0.179 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 013575 48 CLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQ 119 (440)
Q Consensus 48 ~~~~~~~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~ 119 (440)
+...+......--.+|.+..++|...+.+...|...++...-.. +|.-..++..++..|++.+..++.+
T Consensus 19 it~k~~~~~~~~~~ekk~~l~~i~~~leEa~ell~qMdlEvr~l---p~~~Rs~~~~KlR~yksdl~~l~~e 87 (220)
T KOG1666|consen 19 ITKKIGRALSLPGSEKKQLLSEIDSKLEEANELLDQMDLEVREL---PPNFRSSYLSKLREYKSDLKKLKRE 87 (220)
T ss_pred HHHhHHHHhcCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC---CchhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333344444456777888888888888888888776543221 1223556777777777777766543
No 74
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=41.78 E-value=6.6e+02 Score=29.71 Aligned_cols=46 Identities=17% Similarity=0.245 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHcCCCcchHHHHH
Q 013575 302 QAEVEVERLDQLKASRMKEIAFK---RQGELEEIFARAHIEIDPVAARE 347 (440)
Q Consensus 302 ~~e~El~RL~~lK~~~lk~li~~---~r~el~elWd~~~~~~eer~~f~ 347 (440)
....--+.|+.+|+.++.+|-.. .-..|.+++...-++-+..-.+.
T Consensus 1121 kr~~~re~l~~Lrk~RldEFm~gf~~Is~kLkemYQmIT~GGdAeLElV 1169 (1293)
T KOG0996|consen 1121 KRDEHREKLEELRKRRLDEFMAGFNIISMKLKEMYQMITLGGDAELELV 1169 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEee
Confidence 33344456788899999998855 56889999999988877654443
No 75
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=41.49 E-value=1.7e+02 Score=22.96 Aligned_cols=85 Identities=11% Similarity=0.104 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 46 KECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVK 125 (440)
Q Consensus 46 ~~~~~~~~~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~ 125 (440)
.++++++.+.+++.+.....+.++=..+...+..+...|..-.... ......+... |..++..++++-..-..
T Consensus 6 ~Gl~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~------~~~~~~~~~~-y~~KL~~ikkrm~~l~~ 78 (92)
T PF14712_consen 6 EGLLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVE------QINEPFDLDP-YVKKLVNIKKRMSNLHE 78 (92)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhhhHHHhhH-HHHHHHHHHHHHHHHHH
Confidence 3566777777777777777776666666666666666664332210 0110122222 55555555554444444
Q ss_pred HHHHHHHHHHHH
Q 013575 126 EFSDVQSQIQKI 137 (440)
Q Consensus 126 ~~~~l~~~i~~L 137 (440)
.+..++.....|
T Consensus 79 ~l~~lk~R~~~L 90 (92)
T PF14712_consen 79 RLQKLKKRADKL 90 (92)
T ss_pred HHHHHHHHHHhh
Confidence 455555544433
No 76
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=40.76 E-value=4.6e+02 Score=27.58 Aligned_cols=143 Identities=12% Similarity=0.109 Sum_probs=78.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013575 101 TIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSD 180 (440)
Q Consensus 101 sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~~~~~~~~~~~~~lS~e~L~~l~~~l~~L~~ek~~ 180 (440)
.+.+++..+..++...+.+ +...+..+..+-..++..+..... ........-..++..++..+..+...+..
T Consensus 201 ~~~~~l~~l~~~l~~~~~~-------l~~~~a~~~~l~~~l~~~~~~~~~-~~~~~~~~l~~~l~~l~~~l~~l~~~y~~ 272 (498)
T TIGR03007 201 DYYSEISEAQEELEAARLE-------LNEAIAQRDALKRQLGGEEPVLLA-GSSVANSELDGRIEALEKQLDALRLRYTD 272 (498)
T ss_pred hHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhccCCCCcCc-ccccCCCchHHHHHHHHHHHHHHHHHhcc
Confidence 3445555555555555544 445555555555555543321110 01011123357799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 181 RLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLID 260 (440)
Q Consensus 181 R~~~~~~l~~~I~~l~~~L~~~~~~~~~e~~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~~ 260 (440)
..-.+..+..+|..+-..+.-..... .. . .......+.....|...+..++.....-..++..+...+..
T Consensus 273 ~hP~v~~l~~qi~~l~~~l~~~~~~~----~~---~---~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~ 342 (498)
T TIGR03007 273 KHPDVIATKREIAQLEEQKEEEGSAK----NG---G---PERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIER 342 (498)
T ss_pred cChHHHHHHHHHHHHHHHHHhhcccc----cc---C---cccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888875311111 00 0 00111122334555555555555555555555555555554
Q ss_pred H
Q 013575 261 L 261 (440)
Q Consensus 261 L 261 (440)
+
T Consensus 343 ~ 343 (498)
T TIGR03007 343 L 343 (498)
T ss_pred H
Confidence 4
No 77
>PRK09039 hypothetical protein; Validated
Probab=39.90 E-value=4.1e+02 Score=26.78 Aligned_cols=141 Identities=13% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 59 AAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKIC 138 (440)
Q Consensus 59 ~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~ 138 (440)
.......+.++++.+..+|..|...|+.... ....|-..+..++.+++.++..+......+.
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~--------~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~---------- 105 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELADLLSLERQ--------GNQDLQDSVANLRASLSAAEAERSRLQALLA---------- 105 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------
Q ss_pred hHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCCCC
Q 013575 139 GEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDST 218 (440)
Q Consensus 139 ~~L~~~~~~~~~~~~~~~~~lS~e~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~l~~~L~~~~~~~~~e~~~sl~~~~ 218 (440)
+....... -..++..+...+...+.++.+-...+.-+..+|..|=..
T Consensus 106 ---~~~~~~~~----------~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q-------------------- 152 (343)
T PRK09039 106 ---ELAGAGAA----------AEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQ-------------------- 152 (343)
T ss_pred ---hhhhhcch----------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--------------------
Q ss_pred CCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 219 GVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDL 261 (440)
Q Consensus 219 ~~~~~~ls~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~~L 261 (440)
+..|+..+...+.....-..++..+...|...
T Consensus 153 -----------la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 153 -----------LAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 78
>PRK04863 mukB cell division protein MukB; Provisional
Probab=39.20 E-value=8.1e+02 Score=30.06 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHhchHHHH
Q 013575 367 MDNQIAKAKEEAHSRKEILD 386 (440)
Q Consensus 367 ~E~Ei~rLk~~~~~~k~Il~ 386 (440)
+|.+...-+..+..++.+++
T Consensus 639 ~~~~~~~~~~~~~~~~~~L~ 658 (1486)
T PRK04863 639 RERELTVERDELAARKQALD 658 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 79
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=38.91 E-value=4e+02 Score=26.44 Aligned_cols=146 Identities=17% Similarity=0.208 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHH
Q 013575 161 LKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLAL 240 (440)
Q Consensus 161 ~e~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~l~~~L~~~~~~~~~e~~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L 240 (440)
--.++.|+..+..|+.|-..-......+......+ .......+.+. +..+.-.+..|..|...+.+-
T Consensus 159 ~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~----EekEqqLv~dc---------v~QL~~An~qia~LseELa~k 225 (306)
T PF04849_consen 159 CIQLEALQEKLKSLEEENEQLRSEASQLKTETDTY----EEKEQQLVLDC---------VKQLSEANQQIASLSEELARK 225 (306)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhc----cHHHHHHHHHH---------HHHhhhcchhHHHHHHHHHHH
Confidence 45677888888888887664444444333222111 10000001000 133444566788888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhHHHHhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhHH
Q 013575 241 KEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKE 320 (440)
Q Consensus 241 ~~~K~~r~~~~~~l~~~l~~LW~~L~i~~ee~~~F~~~~~~i~~s~~~~~~~~~lS~~~l~~~e~El~RL~~lK~~~lk~ 320 (440)
.+.-..-.++|..|..++..|=.++.--..+-+...... ..+.++=..+.+||.-|++-+.+.+.-
T Consensus 226 ~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L--------------~~ske~Q~~L~aEL~elqdkY~E~~~m 291 (306)
T PF04849_consen 226 TEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHL--------------QASKESQRQLQAELQELQDKYAECMAM 291 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777888888888777666554333322232222 123667778899999999999998888
Q ss_pred HHHHHHHHHHHHHH
Q 013575 321 IAFKRQGELEEIFA 334 (440)
Q Consensus 321 li~~~r~el~elWd 334 (440)
|.+ ++.++..+-.
T Consensus 292 L~E-aQEElk~lR~ 304 (306)
T PF04849_consen 292 LHE-AQEELKTLRK 304 (306)
T ss_pred HHH-HHHHHHHhhC
Confidence 875 8888877643
No 80
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=38.59 E-value=3.6e+02 Score=25.83 Aligned_cols=40 Identities=15% Similarity=0.397 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 013575 103 KEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIA 142 (440)
Q Consensus 103 ~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~ 142 (440)
..+...++..++.+++...+..+.+..++..+..--..|.
T Consensus 69 ~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 69 RERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555555444444
No 81
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=38.51 E-value=3.5e+02 Score=25.66 Aligned_cols=63 Identities=21% Similarity=0.350 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 105 QLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHK 184 (440)
Q Consensus 105 ~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~~~~~~~~~~~~~lS~e~L~~l~~~l~~L~~ek~~R~~~ 184 (440)
.++.++.++.+|.+.+..-.+++..+.+ ....|..+....+.|..|+....+.
T Consensus 2 ~i~~ir~K~~~lek~k~~i~~e~~~~e~---------------------------ee~~L~e~~kE~~~L~~Er~~h~ee 54 (230)
T PF10146_consen 2 KIKEIRNKTLELEKLKNEILQEVESLEN---------------------------EEKCLEEYRKEMEELLQERMAHVEE 54 (230)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777666655554433 2345667777888888888877776
Q ss_pred HHHHHHHHHH
Q 013575 185 VLEFVSTVHD 194 (440)
Q Consensus 185 ~~~l~~~I~~ 194 (440)
+..+-..|..
T Consensus 55 LrqI~~DIn~ 64 (230)
T PF10146_consen 55 LRQINQDINT 64 (230)
T ss_pred HHHHHHHHHH
Confidence 6655555544
No 82
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.48 E-value=7.9e+02 Score=29.67 Aligned_cols=39 Identities=8% Similarity=0.041 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013575 229 TLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDT 267 (440)
Q Consensus 229 ~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~~LW~~L~i 267 (440)
....+.....+|+..+......+......+..+-...++
T Consensus 341 ~~~~l~~e~gkl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (1311)
T TIGR00606 341 EKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLEL 379 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 345666667777777777777776666666666665553
No 83
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=38.21 E-value=3.5e+02 Score=25.54 Aligned_cols=45 Identities=24% Similarity=0.232 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Q 013575 227 NDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEE 271 (440)
Q Consensus 227 ~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~~LW~~L~i~~ee 271 (440)
.+.++.|..+..+|++....+.-++.+|..+..+|-..+..|++.
T Consensus 169 ~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~~ 213 (290)
T COG4026 169 QERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEE 213 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHHH
Confidence 346788888888888888877778888888888888777777654
No 84
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=37.60 E-value=5.3e+02 Score=28.78 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 159 LTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHD 194 (440)
Q Consensus 159 lS~e~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~ 194 (440)
.+.++++.|+..+..|+.+...-...+..+...|..
T Consensus 500 ~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 500 SLSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888899999999999887666655555555554
No 85
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=37.51 E-value=5.9e+02 Score=27.97 Aligned_cols=116 Identities=15% Similarity=0.240 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 54 RKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQ 133 (440)
Q Consensus 54 ~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~ 133 (440)
..|....++|......+..+...|..|-..+..++.+. ...+|.- ....+...++.|++++.....++......
T Consensus 36 eev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~-----~pa~pse-~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ 109 (617)
T PF15070_consen 36 EEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPE-----PPAGPSE-VEQQLQAEAEHLRKELESLEEQLQAQVEN 109 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcc-----ccccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777778888888888888888888776431 2233333 34566777777777666666555554333
Q ss_pred HHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 134 IQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVST 191 (440)
Q Consensus 134 i~~L~~~L~~~~~~~~~~~~~~~~~lS~e~L~~l~~~l~~L~~ek~~R~~~~~~l~~~ 191 (440)
-..|.. |.. . -.++|..+...+..++.....|.+.+..+.+.
T Consensus 110 ne~Ls~-L~~-----E----------qEerL~ELE~~le~~~e~~~D~~kLLe~lqsd 151 (617)
T PF15070_consen 110 NEQLSR-LNQ-----E----------QEERLAELEEELERLQEQQEDRQKLLEQLQSD 151 (617)
T ss_pred HHHHHH-HHH-----H----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 333311 110 0 24566666666666666665555544444333
No 86
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=35.58 E-value=5.6e+02 Score=27.38 Aligned_cols=73 Identities=15% Similarity=0.216 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 105 QLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHK 184 (440)
Q Consensus 105 ~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~~~~~~~~~~~~~lS~e~L~~l~~~l~~L~~ek~~R~~~ 184 (440)
.-..+..+++...+.+.....++......+..|-++|...... =+++|..+..|+..|..........
T Consensus 442 Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~N------------YE~QLs~MSEHLasmNeqL~~Q~ee 509 (518)
T PF10212_consen 442 ECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRN------------YEEQLSMMSEHLASMNEQLAKQREE 509 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666677777777888888888888888776531 1567888888888888877766666
Q ss_pred HHHHH
Q 013575 185 VLEFV 189 (440)
Q Consensus 185 ~~~l~ 189 (440)
+..++
T Consensus 510 I~~LK 514 (518)
T PF10212_consen 510 IQTLK 514 (518)
T ss_pred HHHHh
Confidence 65554
No 87
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=35.54 E-value=8.3e+02 Score=29.06 Aligned_cols=226 Identities=15% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 45 EKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERV 124 (440)
Q Consensus 45 ~~~~~~~~~~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~ 124 (440)
+.+-++.-..-+++++..-.++...|.....+...+ .......+....+.+..++.+.+.++....
T Consensus 449 ~~~~~~~~~~~~~~~~~~~keL~e~i~~lk~~~~el--------------~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~ 514 (1317)
T KOG0612|consen 449 EKEKLDEKCQAVAELEEMDKELEETIEKLKSEESEL--------------QREQKALLQHEQKEVEEKLSEEEAKKRKLE 514 (1317)
T ss_pred HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 013575 125 KEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFF 204 (440)
Q Consensus 125 ~~~~~l~~~i~~L~~~L~~~~~~~~~~~~~~~~~lS~e~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~l~~~L~~~~~ 204 (440)
.++.+++.++..+......... +.+++..++..+.........-.+....++..-..++..|.....
T Consensus 515 ~~~~~~~eele~~q~~~~~~~~-------------~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e 581 (1317)
T KOG0612|consen 515 ALVRQLEEELEDAQKKNDNAAD-------------SLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELE 581 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------HHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhh
Q ss_pred cccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhHHHHhccccc
Q 013575 205 STVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISA 284 (440)
Q Consensus 205 ~~~~e~~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~~LW~~L~i~~ee~~~F~~~~~~i~~ 284 (440)
.. ..+...+..++..+..-.+.-..++......-..-.--.+...+....++..
T Consensus 582 ~~------------------------~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL-- 635 (1317)
T KOG0612|consen 582 EN------------------------RDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSL-- 635 (1317)
T ss_pred cc------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--
Q ss_pred cccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 013575 285 YVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFAR 335 (440)
Q Consensus 285 s~~~~~~~~~lS~~~l~~~e~El~RL~~lK~~~lk~li~~~r~el~elWd~ 335 (440)
..++.+...++..++++|+.++..+-......+..-|+.
T Consensus 636 ------------~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~ 674 (1317)
T KOG0612|consen 636 ------------EETLKAGKKELLKVEELKRENQERISDSEKEALEIKLER 674 (1317)
T ss_pred ------------HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 88
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=35.11 E-value=2.3e+02 Score=22.41 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 013575 170 QLQELQKEKSDRLHKVLEFVSTVHDLCGVLGM 201 (440)
Q Consensus 170 ~l~~L~~ek~~R~~~~~~l~~~I~~l~~~L~~ 201 (440)
.+...-..++..+=.+..+...|......||+
T Consensus 54 ~l~~av~~FE~~HP~l~~~lr~i~~sLa~MGI 85 (85)
T PF14357_consen 54 RLNEAVERFEASHPKLAGILRNIMDSLANMGI 85 (85)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHCCC
Confidence 34444455555666666777777777777764
No 89
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=32.71 E-value=5.3e+02 Score=25.98 Aligned_cols=277 Identities=14% Similarity=0.072 Sum_probs=0.0
Q ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhCCCCCCCCCCCCCCCCCH
Q 013575 30 VGENDEERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELA-------SLLSALGEKSIAGLGIPEKTSGTI 102 (440)
Q Consensus 30 iG~~~~er~~~l~~l~~~~~~~~~~~vee~~~~k~~l~~~i~~~~~el~-------~L~~eLg~~~~~~~~~~~~~~~sL 102 (440)
.|+|+.=+.+.-.=....=.+.+...+.+....+.+....+..+...|. .+....|...-.+ +.+..-..+|
T Consensus 54 ~~lP~sl~~~~~~v~~~~g~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~g~~~Wtr-~~S~~~~~~l 132 (353)
T cd09236 54 LGLPPSLLRHAEEIRQEDGLERIRASLDDVARLAASDRAILEEAMDILDDEASEDESLRRKFGTDRWTR-PDSHEANPKL 132 (353)
T ss_pred CCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCCC-CCcHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 013575 103 KEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRL 182 (440)
Q Consensus 103 ~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~~~~~~~~~~~~~lS~e~L~~l~~~l~~L~~ek~~R~ 182 (440)
...+..|+..++.....=..-...|......+.-||.-..................-....+..|+..+..+..-+.+|.
T Consensus 133 ~~~~~~~~~~L~~A~~sD~~v~~k~~~~~~~l~lL~~~~~~l~~~~Ps~~~~~~~~~~~~~i~~Lr~~l~~l~~l~~eR~ 212 (353)
T cd09236 133 YTQAAEYEGYLKQAGASDELVRRKLDEWEDLIQILTGDERDLENFVPSSRRPSIPPELERHVRALRVSLEELDRLESRRR 212 (353)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCHHHHHHhCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH------HHHHh----CCCcccccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 183 HKVLEFVSTVHD------LCGVL----GMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQ 252 (440)
Q Consensus 183 ~~~~~l~~~I~~------l~~~L----~~~~~~~~~e~~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L~~~K~~r~~~~~ 252 (440)
..+..++..++. |+..+ +.-....+... .--.|....|.++......++........-+.
T Consensus 213 ~~~~~Lk~k~~~DDI~~~ll~~~~~~~~~~~~~~i~~~----------~fe~lf~~eL~kf~~~~~~l~~~~~~Q~~ll~ 282 (353)
T cd09236 213 RKVERARTKARADDIRPEILREAARLEREYPATEVAPA----------HFEDLFDKRLAKYDKDLDAVSEEAQEQEEILQ 282 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhhhcccccccccHH----------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH--HHhcCCCHHHHHhHHHHhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHH
Q 013575 253 ELATQLIDL--WNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKA--SRMKEIAFKRQGE 328 (440)
Q Consensus 253 ~l~~~l~~L--W~~L~i~~ee~~~F~~~~~~i~~s~~~~~~~~~lS~~~l~~~e~El~RL~~lK~--~~lk~li~~~r~e 328 (440)
++...-..+ =...+-...+|+.+.... ......|..=+..|.+=.+ .-|.+++.+.+..
T Consensus 283 ~i~~~n~~f~~~~~~~~~~~~re~~lq~L-----------------~~ay~~y~el~~nl~eG~kFY~dL~~~~~~~~~~ 345 (353)
T cd09236 283 QIEVANKAFLQSRKGDPATKERERALQSL-----------------DLAYFKYKEIVSNLDEGRKFYNDLAKILSQFRDA 345 (353)
T ss_pred HHHHHHHHHHHHHccChhHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 013575 329 LEEIFA 334 (440)
Q Consensus 329 l~elWd 334 (440)
+..+..
T Consensus 346 ~~~fv~ 351 (353)
T cd09236 346 CKAWVY 351 (353)
T ss_pred HHHHHh
No 90
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=32.66 E-value=5.9e+02 Score=26.50 Aligned_cols=145 Identities=16% Similarity=0.223 Sum_probs=75.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhHHHHhccccccccCCCCCCCchHHHHHHHH
Q 013575 225 ISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAE 304 (440)
Q Consensus 225 ls~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~~LW~~L~i~~ee~~~F~~~~~~i~~s~~~~~~~~~lS~~~l~~~e 304 (440)
.+...++.|+.....|...++-.-.-..++...+..+=++.+ .|.......+ ++-+..-++...
T Consensus 149 ~~~~~~~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~-------~~k~~~~~~~---------~~s~R~y~e~~k 212 (426)
T smart00806 149 LNKEQRAELKSLQRELAVLRQTHNSFFTEIKESIKDILEKID-------KFKSSSLSAS---------GSSNRAYVESSK 212 (426)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhccC---------CCcchHHHHHhH
Confidence 444455666666666665555555555555566665555543 4655422222 223344555555
Q ss_pred HHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHcCCCcchHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHHHHhc
Q 013575 305 VEVERLDQL---KASRMKEIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHSR 381 (440)
Q Consensus 305 ~El~RL~~l---K~~~lk~li~~~r~el~elWd~~~~~~eer~~f~~~~~~~~s~~~~~eelL~~~E~Ei~rLk~~~~~~ 381 (440)
.+|..--.- |-.=+..+|+..|..... + ++-|..++ +. . .-.=+.....++.+++.+...=
T Consensus 213 ~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~--R--gVRp~~~q-Le----~-------v~kdi~~a~keL~~m~~~i~~e 276 (426)
T smart00806 213 KKLSEDSDSLLTKVDDLQDIIEALRKDVAQ--R--GVRPSKKQ-LE----T-------VQKELETARKELKKMEEYIDIE 276 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--c--CCCCCHHH-HH----H-------HHHHHHHHHHHHHHHHHHHhhc
Confidence 544322111 111223344444443221 1 11111111 11 1 1133567788888888888888
Q ss_pred hHHHHHH--HHHHHHhHHhHHH
Q 013575 382 KEILDKV--EKWMSACEEESWL 401 (440)
Q Consensus 382 k~Il~~v--ek~~~l~~e~~~L 401 (440)
||+...| .+.+..|+|+.||
T Consensus 277 KP~WkKiWE~EL~~VcEEqqfL 298 (426)
T smart00806 277 KPIWKKIWEAELDKVCEEQQFL 298 (426)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 8888888 6778888888887
No 91
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=32.66 E-value=7.5e+02 Score=27.73 Aligned_cols=80 Identities=11% Similarity=0.139 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 106 LAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKV 185 (440)
Q Consensus 106 l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~~~~~~~~~~~~~lS~e~L~~l~~~l~~L~~ek~~R~~~~ 185 (440)
...+...|+.++.+.......+++++.++...-..+..... +.-....++..+...++..|.+.-.+..+-++++
T Consensus 634 Er~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~-----~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~i 708 (717)
T PF10168_consen 634 EREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKS-----PKKKSIVLSESQKRTIKEILKQQGEEIDELVKQI 708 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----ccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666655544445555555555544333331111 0011336899999999999999888877555555
Q ss_pred HHHHH
Q 013575 186 LEFVS 190 (440)
Q Consensus 186 ~~l~~ 190 (440)
..+.+
T Consensus 709 k~i~~ 713 (717)
T PF10168_consen 709 KNIKK 713 (717)
T ss_pred HHHHH
Confidence 44443
No 92
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=32.65 E-value=2.4e+02 Score=30.58 Aligned_cols=92 Identities=14% Similarity=0.241 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 013575 99 SGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEK 178 (440)
Q Consensus 99 ~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~~~~~~~~~~~~~lS~e~L~~l~~~l~~L~~ek 178 (440)
..+....+..+..+++.|..+-......+.+++..|..|-+.|....... .....-...+..+...+..|+.+.
T Consensus 417 i~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~------~~~~~~~rei~~~~~~I~~L~~~L 490 (652)
T COG2433 417 ITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREV------RDKVRKDREIRARDRRIERLEKEL 490 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhhhHHHHHHHHHHHHHHHHH
Confidence 35667778889999999999999999999999998888877776543211 112234556777888888888887
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013575 179 SDRLHKVLEFVSTVHDLC 196 (440)
Q Consensus 179 ~~R~~~~~~l~~~I~~l~ 196 (440)
.+-...+..+...+..+-
T Consensus 491 ~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 491 EEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 776666667776666655
No 93
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=32.29 E-value=5.2e+02 Score=25.73 Aligned_cols=21 Identities=10% Similarity=0.279 Sum_probs=13.1
Q ss_pred ccCCCHHHHHHHHHHHHHHHH
Q 013575 222 SKSISNDTLARLAKTVLALKE 242 (440)
Q Consensus 222 ~~~ls~~~l~~L~~~~~~L~~ 242 (440)
..+.|..-+..|+..++.|+.
T Consensus 265 ~r~~t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 265 CRGFTFKEIEKLKEQLKLLQS 285 (312)
T ss_pred cCCCCHHHHHHHHHHHHHHHH
Confidence 355566667777776666643
No 94
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=32.19 E-value=6.6e+02 Score=26.89 Aligned_cols=73 Identities=22% Similarity=0.384 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 47 ECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKE 126 (440)
Q Consensus 47 ~~~~~~~~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~ 126 (440)
+|..+ ...++.+++.|..+..++......+..|-++|-.... +=..|+..+..+|-.|..+......+
T Consensus 442 Ec~aL-~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~-----------NYE~QLs~MSEHLasmNeqL~~Q~ee 509 (518)
T PF10212_consen 442 ECRAL-QKRLESAEKEKESLEEELKEANQNISRLQDELETTRR-----------NYEEQLSMMSEHLASMNEQLAKQREE 509 (518)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55533 4457778888888999999999999999888876543 23468888888888888877777777
Q ss_pred HHHHH
Q 013575 127 FSDVQ 131 (440)
Q Consensus 127 ~~~l~ 131 (440)
|..++
T Consensus 510 I~~LK 514 (518)
T PF10212_consen 510 IQTLK 514 (518)
T ss_pred HHHHh
Confidence 76665
No 95
>PRK02224 chromosome segregation protein; Provisional
Probab=31.36 E-value=8.2e+02 Score=27.79 Aligned_cols=30 Identities=7% Similarity=0.082 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Q 013575 364 LADMDNQIAKAKEEAHSRKEILDKVEKWMS 393 (440)
Q Consensus 364 L~~~E~Ei~rLk~~~~~~k~Il~~vek~~~ 393 (440)
+...+..+..++..+.....+...+.+...
T Consensus 700 ~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~ 729 (880)
T PRK02224 700 REALENRVEALEALYDEAEELESMYGDLRA 729 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666665555555555555443
No 96
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=31.11 E-value=5.1e+02 Score=25.24 Aligned_cols=34 Identities=24% Similarity=0.489 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 013575 297 LDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEE 331 (440)
Q Consensus 297 ~~~l~~~e~El~RL~~lK~~~lk~li~~~r~el~e 331 (440)
++-.+.++.||+.|.+.+-.+...+-. ...+|++
T Consensus 224 mdEyEklE~EL~~lY~~Y~~kfRNl~y-Le~qle~ 257 (267)
T PF10234_consen 224 MDEYEKLEEELQKLYEIYVEKFRNLDY-LEHQLEE 257 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHH
Confidence 556688899999999888887776654 4455443
No 97
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=30.94 E-value=2.2e+02 Score=21.07 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 013575 60 AKSRAQLLQALSDAKIELASLLSALGEKSIA 90 (440)
Q Consensus 60 ~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~ 90 (440)
..++.++.++++.++.++..+..-|+.+.|.
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~ 33 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSNENFV 33 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 4678889999999999999999999999875
No 98
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=30.85 E-value=9.1e+02 Score=28.14 Aligned_cols=81 Identities=21% Similarity=0.215 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 51 VYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDV 130 (440)
Q Consensus 51 ~~~~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l 130 (440)
+|...|++++..-.-+..+..-+.++++.+...-..-. ....-+++.++++.++.+.+..+.+-++.+.+...+
T Consensus 261 fykdRveelkedN~vLleekeMLeeQLq~lrarse~~t------leseiiqlkqkl~dm~~erdtdr~kteeL~eEnstL 334 (1195)
T KOG4643|consen 261 FYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGAT------LESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTL 334 (1195)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCC------hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 36667777777666667777777777777654321111 112344555556666666666666666665555555
Q ss_pred HHHHHHH
Q 013575 131 QSQIQKI 137 (440)
Q Consensus 131 ~~~i~~L 137 (440)
+.+-..|
T Consensus 335 q~q~eqL 341 (1195)
T KOG4643|consen 335 QVQKEQL 341 (1195)
T ss_pred HHHHHHh
Confidence 5544444
No 99
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=29.83 E-value=5.1e+02 Score=24.87 Aligned_cols=92 Identities=15% Similarity=0.246 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCC--------------------CCCCCC------CCC---
Q 013575 107 AAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLG--------------------DQAPSV------DES--- 157 (440)
Q Consensus 107 ~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~~~--------------------~~~~~~------~~~--- 157 (440)
+.++.++..+..+..+..+-+..+...+..+....+.....+ ...|.. ++.
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL 81 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Confidence 456677777777777777777777777777765422211000 000000 111
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 158 DLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGV 198 (440)
Q Consensus 158 ~lS~e~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~l~~~ 198 (440)
.+=..+-++|+....+|+.|...-..++..++.+|.+|-.+
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11256789999999999999998889999999988887654
No 100
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=29.28 E-value=1.8e+02 Score=30.19 Aligned_cols=80 Identities=11% Similarity=0.213 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 55 KVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQI 134 (440)
Q Consensus 55 ~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i 134 (440)
.+-+....+.++..+++.++.+.+.+..+++..... ....-.|.. +..+++++...--.++..+.+++
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~-----~~~~~~l~~-------~~~~l~~~~~~~~~~~~~~~~~~ 96 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQAKRK-----GEDAEALIA-------EVKELKEEIKALEAELDELEAEL 96 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCcHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567777888999999999999999999863221 111112444 44444444444445666677777
Q ss_pred HHHHhHhcCCCC
Q 013575 135 QKICGEIAGNLS 146 (440)
Q Consensus 135 ~~L~~~L~~~~~ 146 (440)
..++..|...++
T Consensus 97 ~~~~~~iPN~~~ 108 (425)
T PRK05431 97 EELLLRIPNLPH 108 (425)
T ss_pred HHHHHhCCCCCC
Confidence 777776665554
No 101
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=29.20 E-value=3.6e+02 Score=26.30 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhhHHHH
Q 013575 303 AEVEVERLDQLKASRMKEIA 322 (440)
Q Consensus 303 ~e~El~RL~~lK~~~lk~li 322 (440)
+..-++||..+|..+|.+|+
T Consensus 70 ~~~~~erl~~lr~shi~el~ 89 (359)
T KOG4398|consen 70 LRSHYERLANLRRSHILELT 89 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34557899999999988776
No 102
>PRK10884 SH3 domain-containing protein; Provisional
Probab=29.10 E-value=2.4e+02 Score=26.29 Aligned_cols=87 Identities=14% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 52 YKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGT-IKEQLAAIAPALEQLWKQKEERVKEFSDV 130 (440)
Q Consensus 52 ~~~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~s-L~~~l~~l~~~le~l~~~k~~R~~~~~~l 130 (440)
.+..+.+.+.+.+.+..+++....+.+....++....... ..... |.++...|+.++..++.+......+..++
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~-----~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQS-----DSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHhcC
Q 013575 131 QSQIQKICGEIAG 143 (440)
Q Consensus 131 ~~~i~~L~~~L~~ 143 (440)
+..+.-=+-..|+
T Consensus 166 ~~~~~~~wf~~Gg 178 (206)
T PRK10884 166 QRTIIMQWFMYGG 178 (206)
T ss_pred HHHHHHHHHHHch
No 103
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=29.03 E-value=5.8e+02 Score=25.29 Aligned_cols=75 Identities=17% Similarity=0.273 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 54 RKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQ 133 (440)
Q Consensus 54 ~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~ 133 (440)
...++++..--.+-..|....+.+..| ....|......++..+.+.++...+...++.+++..
T Consensus 41 Q~~EQAr~~A~~fA~~ld~~~~kl~~M-----------------s~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~ 103 (301)
T PF06120_consen 41 QNAEQARQEAIEFADSLDELKEKLKEM-----------------SSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQ 103 (301)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhc-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666776666666655 233455566777778888888888888899999999
Q ss_pred HHHHHhHhcCCC
Q 013575 134 IQKICGEIAGNL 145 (440)
Q Consensus 134 i~~L~~~L~~~~ 145 (440)
|..+-..+....
T Consensus 104 i~~y~~~~~~~~ 115 (301)
T PF06120_consen 104 IKNYQQQLAEKG 115 (301)
T ss_pred HHHHHHHHhccC
Confidence 888766666644
No 104
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=28.32 E-value=4.5e+02 Score=23.79 Aligned_cols=46 Identities=9% Similarity=0.097 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 013575 156 ESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGM 201 (440)
Q Consensus 156 ~~~lS~e~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~l~~~L~~ 201 (440)
+..+|.+.+..|...+..|+..+..-......+-.+|..|..-|.+
T Consensus 73 F~~~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~ 118 (201)
T KOG4603|consen 73 FDMVSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTT 118 (201)
T ss_pred hcCCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 4577999999999999999999999999999999999988887775
No 105
>PRK14127 cell division protein GpsB; Provisional
Probab=27.71 E-value=3.6e+02 Score=22.47 Aligned_cols=50 Identities=24% Similarity=0.254 Sum_probs=29.6
Q ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 013575 30 VGENDEERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEK 87 (440)
Q Consensus 30 iG~~~~er~~~l~~l~~~~~~~~~~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~ 87 (440)
-||+.++-+.-+..+... ++....+..+|..++..++.++..+...+..+
T Consensus 21 RGYd~~EVD~FLd~V~~d--------ye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 21 RGYDQDEVDKFLDDVIKD--------YEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred CCCCHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 389888777655544332 22333445556666666667776666666544
No 106
>COG5293 Predicted ATPase [General function prediction only]
Probab=27.48 E-value=7.5e+02 Score=26.08 Aligned_cols=59 Identities=15% Similarity=0.248 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013575 19 LLHKLQEIWDEVGEN-DEERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSAL 84 (440)
Q Consensus 19 ~l~~L~~IW~eiG~~-~~er~~~l~~l~~~~~~~~~~~vee~~~~k~~l~~~i~~~~~el~~L~~eL 84 (440)
...+.+.+|+++|+- +.+-.+-. .++..+++.+++ ...+-+..+|+..+..+..+-..+
T Consensus 299 ~pd~i~~~ye~vg~~fpg~Vkk~~----e~v~~F~r~~~e---~R~~yl~~ei~~i~~dLk~~n~~~ 358 (591)
T COG5293 299 CPDEIQVLYEEVGVLFPGQVKKDF----EHVIAFNRAITE---ERHDYLQEEIAEIEGDLKEVNAEL 358 (591)
T ss_pred ChHHHHHHHHHhhhcChHHHHHhH----HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357789999999985 22222222 245567788887 345556666666666665554444
No 107
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=27.13 E-value=3.8e+02 Score=25.82 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHhHHHHhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 013575 250 KLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAFKRQGEL 329 (440)
Q Consensus 250 ~~~~l~~~l~~LW~~L~i~~ee~~~F~~~~~~i~~s~~~~~~~~~lS~~~l~~~e~El~RL~~lK~~~lk~li~~~r~el 329 (440)
=+..++.+...++.+.|++ |. .|+. ...+-++.+..++++++..-.+....|+..--+.|
T Consensus 53 ~f~~lk~~A~r~~~~~G~r------Fl---gG~a-----------VP~~~~~~l~~~L~~i~~eF~~~k~~Fl~~Yd~~i 112 (257)
T PF11348_consen 53 PFSKLKKRAERLCLKVGVR------FL---GGYA-----------VPEDKAEELAEELEDIKTEFEQEKQDFLANYDQAI 112 (257)
T ss_pred HHHHHHHHHHHHHHHcCCc------cc---ceeE-----------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888899999998 83 3443 23778999999999999998888899998777888
Q ss_pred HHHHHH
Q 013575 330 EEIFAR 335 (440)
Q Consensus 330 ~elWd~ 335 (440)
.++.+.
T Consensus 113 ~~w~~~ 118 (257)
T PF11348_consen 113 EEWIDR 118 (257)
T ss_pred HHHHHH
Confidence 888777
No 108
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=26.99 E-value=4.3e+02 Score=23.07 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHH
Q 013575 297 LDLIEQAEVEVE---RLDQLKASRMKEIAFKRQGELEEIF 333 (440)
Q Consensus 297 ~~~l~~~e~El~---RL~~lK~~~lk~li~~~r~el~elW 333 (440)
..-|+.+...|+ +++..+......=+.++|.++....
T Consensus 81 ~~~i~~L~~kLe~~~kl~~~~~~~~~~~v~~aR~~vv~CL 120 (142)
T PF07956_consen 81 NEEIEKLREKLEERKKLRELKEEKNSEEVEKARSAVVRCL 120 (142)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHH
Confidence 344556666665 4444444332233466777776543
No 109
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=25.66 E-value=1e+03 Score=27.00 Aligned_cols=256 Identities=11% Similarity=0.101 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCC-C--C-C-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 55 KVEQAAKSRAQLLQALSDAKIELASLLSALGEK--SIA-G--L-G-IPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEF 127 (440)
Q Consensus 55 ~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~--~~~-~--~-~-~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~ 127 (440)
.+..+..+.+.|..++...+..+......|.-- |.. . . . -....-..+..++.......+.+.........++
T Consensus 4 ql~~~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL 83 (775)
T PF10174_consen 4 QLERLQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEEL 83 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 456677777888888888888887777776541 111 0 0 0 0000111233333344444444444444444444
Q ss_pred HHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc-
Q 013575 128 SDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFST- 206 (440)
Q Consensus 128 ~~l~~~i~~L~~~L~~~~~~~~~~~~~~~~~lS~e~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~l~~~L~~~~~~~- 206 (440)
.....+..+-..+...++..+. ....+.+.+++.+++...+.+..+...-..++..+...|..+-..|+...+..
T Consensus 84 -r~q~e~~rL~~~~e~~~~e~e~---l~~ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~ 159 (775)
T PF10174_consen 84 -RAQRELNRLQQELEKAQYEFES---LQELDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIE 159 (775)
T ss_pred -HHhhHHHHHHHHhhhcccccch---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443331111 11135555555555555555555544444444444444444444333210000
Q ss_pred -cc-cccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhHHHHhccccc
Q 013575 207 -VT-EVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISA 284 (440)
Q Consensus 207 -~~-e~~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~~LW~~L~i~~ee~~~F~~~~~~i~~ 284 (440)
.. .+...-.+...+...+.-...+..+...+.+|+.....+......++..++.-...-.-|.
T Consensus 160 kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a--------------- 224 (775)
T PF10174_consen 160 KLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDA--------------- 224 (775)
T ss_pred HHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCch---------------
Confidence 00 0000000000011223334467777788888887777777666666655443222111110
Q ss_pred cccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCcchHH
Q 013575 285 YVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFARAHIEIDPVA 344 (440)
Q Consensus 285 s~~~~~~~~~lS~~~l~~~e~El~RL~~lK~~~lk~li~~~r~el~elWd~~~~~~eer~ 344 (440)
.-..+..-| ....=|...+.+.+.++..+|..|-..+..+...|.
T Consensus 225 --------------~t~alq~~i-e~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~ 269 (775)
T PF10174_consen 225 --------------ETEALQTVI-EEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRD 269 (775)
T ss_pred --------------hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchH
Confidence 001111111 122333334445567788999999999998888765
No 110
>PLN02678 seryl-tRNA synthetase
Probab=25.40 E-value=2.2e+02 Score=29.94 Aligned_cols=81 Identities=16% Similarity=0.177 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 54 RKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQ 133 (440)
Q Consensus 54 ~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~ 133 (440)
..+-+....+..+.++++.++++.+.+..+++.-... .... ..+..++..++++....-.++..+.++
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~-----~~~~-------~~l~~~~~~Lk~ei~~le~~~~~~~~~ 100 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIA-----KEDA-------TELIAETKELKKEITEKEAEVQEAKAA 100 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----CCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677788999999999999999999762211 1111 233334444444444555566667777
Q ss_pred HHHHHhHhcCCCC
Q 013575 134 IQKICGEIAGNLS 146 (440)
Q Consensus 134 i~~L~~~L~~~~~ 146 (440)
+..++..|...|+
T Consensus 101 l~~~~~~iPNi~~ 113 (448)
T PLN02678 101 LDAKLKTIGNLVH 113 (448)
T ss_pred HHHHHHhCCCCCC
Confidence 7777777666554
No 111
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=25.22 E-value=2.7e+02 Score=24.89 Aligned_cols=96 Identities=7% Similarity=0.094 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC---cccccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHH-HH
Q 013575 175 QKEKSDRLHKVLEFVSTVHDLCGVLGMD---FFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRL-HK 250 (440)
Q Consensus 175 ~~ek~~R~~~~~~l~~~I~~l~~~L~~~---~~~~~~e~~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L~~~K~~r~-~~ 250 (440)
-.++..|..++.++...+..+-+++... ..+....+. ...=..+......+.+.-..+. ..
T Consensus 20 a~~~~~R~~~L~~l~~~L~~L~~EI~y~~tpL~eal~~i~---------------~~~~~~~~~~f~~~a~~L~~~~~~~ 84 (170)
T PF09548_consen 20 ARRLKRRVRQLRELRRALQLLETEIRYGATPLPEALERIS---------------RRSEGPIGEFFERVAERLEKNEGES 84 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH---------------hcccchHHHHHHHHHHHHHcCCCCC
Confidence 4567889999999999999988888752 222111110 0001122222332322222222 23
Q ss_pred HHH-HHHHHHHHHHhcCCCHHHHHhHHHHhcccccc
Q 013575 251 LQE-LATQLIDLWNLMDTPSEERRLFDHVTCNISAY 285 (440)
Q Consensus 251 ~~~-l~~~l~~LW~~L~i~~ee~~~F~~~~~~i~~s 285 (440)
+.. ....+..+|..+....++++.+...-..++.|
T Consensus 85 ~~~~w~~~~~~~~~~~~L~~~d~e~L~~lg~~LG~~ 120 (170)
T PF09548_consen 85 FAEAWEEAVEKLLKESALKKEDKEILLELGKSLGYS 120 (170)
T ss_pred HHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHccC
Confidence 444 66678888999999999999998887777644
No 112
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=24.51 E-value=3.8e+02 Score=21.69 Aligned_cols=93 Identities=12% Similarity=0.221 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCC-C--CCCCCCCCC--CC-CCCHHHHHHHHHHHHHHHH
Q 013575 103 KEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNL-S--LGDQAPSVD--ES-DLTLKKLDEYQAQLQELQK 176 (440)
Q Consensus 103 ~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~-~--~~~~~~~~~--~~-~lS~e~L~~l~~~l~~L~~ 176 (440)
..++..|+.++..+...+..--.++.+....+..|...=.... + .|..+...+ .- .--.++++.+...+..+..
T Consensus 5 ~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~ 84 (105)
T cd00632 5 LAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLER 84 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777776666655544455444444433321101111 0 111111111 11 1124566677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013575 177 EKSDRLHKVLEFVSTVHDL 195 (440)
Q Consensus 177 ek~~R~~~~~~l~~~I~~l 195 (440)
.+..-..++.++...|..+
T Consensus 85 ~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 85 QEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776654
No 113
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=24.39 E-value=5.8e+02 Score=23.70 Aligned_cols=167 Identities=18% Similarity=0.216 Sum_probs=91.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHH
Q 013575 25 EIWDEVGENDEERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKE 104 (440)
Q Consensus 25 ~IW~eiG~~~~er~~~l~~l~~~~~~~~~~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~ 104 (440)
.-|..+|++.-+. +-..|+.++.-..+-.+++.+..+.+..+ + +.+++.|..
T Consensus 13 ~amEkvG~hKRdi--------------lvdrVe~Ardsq~eaqeQF~sALe~f~sl---~-----------~~~ggdLe~ 64 (201)
T PF11172_consen 13 SAMEKVGVHKRDI--------------LVDRVEDARDSQQEAQEQFKSALEQFKSL---V-----------NFDGGDLED 64 (201)
T ss_pred HHHHHhCCchhhH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---h-----------CCCCCcHHH
Confidence 3456778776322 23455655555555566666655555544 2 345678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 013575 105 QLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNL--SLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRL 182 (440)
Q Consensus 105 ~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~--~~~~~~~~~~~~~lS~e~L~~l~~~l~~L~~ek~~R~ 182 (440)
..+.|+.+++..+..-.+-...+..+.+.-..|-++-...- +..+ + -.--|..+|...+.+..+|-.-...=.
T Consensus 65 ~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~ALF~EWe~EL~~Y~~~---s--LR~~S~~kL~~tr~~Y~~L~~aM~~Ae 139 (201)
T PF11172_consen 65 KYNALNDEYESSEDAAEEVSDRIDAVEDVADALFDEWEQELDQYSNA---S--LRRASEQKLAETRRRYAQLIKAMRRAE 139 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH---H--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998877655544445544444444443222211 1100 0 012255666666666655555554444
Q ss_pred HHHHHHHHHHHHHHHHhCCCcccccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHH
Q 013575 183 HKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQ 246 (440)
Q Consensus 183 ~~~~~l~~~I~~l~~~L~~~~~~~~~e~~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L~~~K~~ 246 (440)
.++.-+...++...-.|. ..|+-..|..|+.++..++..-..
T Consensus 140 ~km~PVL~~~~D~vL~LK----------------------HNLNA~AI~sL~~e~~~~~~di~~ 181 (201)
T PF11172_consen 140 SKMQPVLAAFRDQVLYLK----------------------HNLNAQAIASLQGEFSSIESDISQ 181 (201)
T ss_pred HhcChHHHHHHHHHHHHh----------------------ccccHHHHHHHHHHHHHHHHHHHH
Confidence 444455555544444444 234455677777777665544433
No 114
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=24.23 E-value=4.1e+02 Score=21.94 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 163 KLDEYQAQLQELQKEKSDRLHKVLEF 188 (440)
Q Consensus 163 ~L~~l~~~l~~L~~ek~~R~~~~~~l 188 (440)
.+..|+..+..++.....-.....++
T Consensus 7 ~~~~l~~~i~~l~~~~~~l~~~~~e~ 32 (129)
T cd00890 7 QLQQLQQQLEALQQQLQKLEAQLTEY 32 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666655554443333333
No 115
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=23.76 E-value=7.5e+02 Score=24.77 Aligned_cols=151 Identities=15% Similarity=0.163 Sum_probs=69.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCC-----CHHHHHHHHHHH
Q 013575 97 KTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDL-----TLKKLDEYQAQL 171 (440)
Q Consensus 97 ~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~~~~~~~~~~~~~l-----S~e~L~~l~~~l 171 (440)
....+|-+.+...+.+...|..+.....+.+.+++-.+.-|-..+......... ......+ --.+|+.++..+
T Consensus 65 ~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~--~~~~~~~~ere~lV~qLEk~~~q~ 142 (319)
T PF09789_consen 65 KENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEG--IGARHFPHEREDLVEQLEKLREQI 142 (319)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcc--ccccccchHHHHHHHHHHHHHHHH
Confidence 355667666666666655555555555555555555554444433322210000 0000111 112233333333
Q ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHH
Q 013575 172 QELQ-------KEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDK 244 (440)
Q Consensus 172 ~~L~-------~ek~~R~~~~~~l~~~I~~l~~~L~~~~~~~~~e~~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L~~~K 244 (440)
..|+ .||++=...-..++..++.|-.+|..-... ..+.+.|.+ .... --..|+..+..+++++
T Consensus 143 ~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g----~~~rivDID---aLi~---ENRyL~erl~q~qeE~ 212 (319)
T PF09789_consen 143 EQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNG----DENRIVDID---ALIM---ENRYLKERLKQLQEEK 212 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCCCcccHH---HHHH---HHHHHHHHHHHHHHHH
Confidence 3333 344444444445555555555555421100 001111110 0000 0125778888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 013575 245 KQRLHKLQELATQLI 259 (440)
Q Consensus 245 ~~r~~~~~~l~~~l~ 259 (440)
.--...+..|...+.
T Consensus 213 ~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 213 ELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHH
Confidence 877777777777665
No 116
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=23.72 E-value=1.1e+03 Score=26.79 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 50 DVYKRKVEQAAKSRAQLLQALSDAKIELASLLSA 83 (440)
Q Consensus 50 ~~~~~~vee~~~~k~~l~~~i~~~~~el~~L~~e 83 (440)
..|++.+...+..+.....+|-.+|-.+..+-.+
T Consensus 88 riyRrdv~llEddlk~~~sQiriLQn~c~~lE~e 121 (1265)
T KOG0976|consen 88 RIYRRDVNLLEDDLKHHESQIRILQNKCLRLEME 121 (1265)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888887777777777777766655433
No 117
>PHA03418 hypothetical E4 protein; Provisional
Probab=23.45 E-value=1.8e+02 Score=27.37 Aligned_cols=40 Identities=20% Similarity=0.367 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Q 013575 227 NDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPS 269 (440)
Q Consensus 227 ~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~~LW~~L~i~~ 269 (440)
...+..+...+.+++....+- |+.+...|..+|.+|+||+
T Consensus 191 ~~LL~~VA~lL~kWE~~f~qL---V~~I~~DL~dYW~kL~tPQ 230 (230)
T PHA03418 191 HGLLGTVACLLGTWEESFRQL---VEDIQEDLDDYWRKLGIPQ 230 (230)
T ss_pred hhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcCCC
Confidence 467888888888887776643 3557788999999999984
No 118
>PRK04863 mukB cell division protein MukB; Provisional
Probab=23.44 E-value=1.4e+03 Score=28.01 Aligned_cols=14 Identities=21% Similarity=0.577 Sum_probs=6.1
Q ss_pred HHHHHhHHhHHHHH
Q 013575 390 KWMSACEEESWLED 403 (440)
Q Consensus 390 k~~~l~~e~~~Lee 403 (440)
.|.++.+-=.-|.|
T Consensus 604 ~W~~a~~al~~L~e 617 (1486)
T PRK04863 604 AWLAAQDALARLRE 617 (1486)
T ss_pred HHHhhHHHHHHHHH
Confidence 45544444333433
No 119
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=23.20 E-value=3.2e+02 Score=24.74 Aligned_cols=35 Identities=17% Similarity=0.329 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 46 KECLDVYKRKVEQAAKSRAQLLQALSDAKIELASL 80 (440)
Q Consensus 46 ~~~~~~~~~~vee~~~~k~~l~~~i~~~~~el~~L 80 (440)
+++...+.+.-.+.+.-..++..+|+.+..+++.|
T Consensus 105 qeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~l 139 (171)
T PF04799_consen 105 QELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRL 139 (171)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555666666677777766666665
No 120
>PRK05658 RNA polymerase sigma factor RpoD; Validated
Probab=23.15 E-value=1e+03 Score=26.06 Aligned_cols=136 Identities=18% Similarity=0.174 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcCCCHHHHHhHHHHhccccccccCCCCCCCchHHHHH
Q 013575 229 TLARLAKTVLALKEDKKQR-------LHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIE 301 (440)
Q Consensus 229 ~l~~L~~~~~~L~~~K~~r-------~~~~~~l~~~l~~LW~~L~i~~ee~~~F~~~~~~i~~s~~~~~~~~~lS~~~l~ 301 (440)
.++.+.+....+....... .++....+.+|..+-..+.+.+...+.+......+ ..-|.
T Consensus 223 ~~~~i~~~~~~~~~~~~k~~~g~~~~~~~~~~~r~~i~~~l~~lkL~~k~id~Lv~~lr~~--------------~~rIr 288 (619)
T PRK05658 223 KFKALAKQYKKLRKAQEKKVEGRLAQHKKYAKLREKLKEELKSLRLTSKQIDELVEQLRDI--------------NKRVR 288 (619)
T ss_pred HHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH--------------HHHHH
Confidence 3444444444444444333 44556677788888888899988888777666533 34555
Q ss_pred HHHHHHHHHHHH-------------------------------HHHhh---HHHHHHHHHHHHHHHHHcCCCcchHHHHH
Q 013575 302 QAEVEVERLDQL-------------------------------KASRM---KEIAFKRQGELEEIFARAHIEIDPVAARE 347 (440)
Q Consensus 302 ~~e~El~RL~~l-------------------------------K~~~l---k~li~~~r~el~elWd~~~~~~eer~~f~ 347 (440)
.++.++.+|-.. ....+ ..-|...+.+|.++=....+++++ +.
T Consensus 289 ~~Er~i~~~~~~~~m~R~~Fi~~f~gnEt~~~w~~~~~~~~~~~a~~l~~~~~~I~~lq~~L~~ie~~~~Ls~eE---lk 365 (619)
T PRK05658 289 GQERELLRLVERLKMPRKDFLKLFQGNELDITWLEKEIASGKPWSEFLVRVYDEIKKLQQELEAIEEETGLTIEE---LK 365 (619)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHccCCcCCHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH---HH
Confidence 555555553110 01111 223456788888888888888876 44
Q ss_pred HhhhhhcCCCC----ChHHHHHHHHHHHHHHHHHHHhc
Q 013575 348 KIMTLIDSGNV----EPAELLADMDNQIAKAKEEAHSR 381 (440)
Q Consensus 348 ~~~~~~~s~~~----~~eelL~~~E~Ei~rLk~~~~~~ 381 (440)
..+..+..|+. -...+...|-.-|...-..|..+
T Consensus 366 ~l~~~i~~g~~~~~~a~~~Li~~nlrlV~~iA~ky~~~ 403 (619)
T PRK05658 366 EINRQISKGEAKARRAKKEMVEANLRLVISIAKKYTNR 403 (619)
T ss_pred HHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44444555521 12577777777777777777655
No 121
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=22.99 E-value=5.3e+02 Score=22.76 Aligned_cols=29 Identities=21% Similarity=0.215 Sum_probs=13.9
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 013575 104 EQLAAIAPAL---EQLWKQKEERVKEFSDVQS 132 (440)
Q Consensus 104 ~~l~~l~~~l---e~l~~~k~~R~~~~~~l~~ 132 (440)
.+...|..-+ .+..++|......+.++..
T Consensus 109 KKEkEykealea~nEknkeK~~Lv~~L~eLv~ 140 (159)
T PF04949_consen 109 KKEKEYKEALEAFNEKNKEKAQLVTRLMELVS 140 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554433 3444555555555555444
No 122
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=22.95 E-value=5.3e+02 Score=22.77 Aligned_cols=27 Identities=11% Similarity=0.208 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 159 LTLKKLDEYQAQLQELQKEKSDRLHKV 185 (440)
Q Consensus 159 lS~e~L~~l~~~l~~L~~ek~~R~~~~ 185 (440)
.|.+.+..+......+.++...|...|
T Consensus 142 vs~ee~~~~~~~~~~~~k~w~kRKri~ 168 (169)
T PF07106_consen 142 VSPEEKEKLEKEYKKWRKEWKKRKRIC 168 (169)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999988754
No 123
>KOG3341 consensus RNA polymerase II transcription factor complex subunit [Transcription]
Probab=22.89 E-value=2.4e+02 Score=26.53 Aligned_cols=47 Identities=21% Similarity=0.390 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCC
Q 013575 100 GTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLS 146 (440)
Q Consensus 100 ~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~ 146 (440)
.-+.+|+..++..|+++-++..+=+++=.+.+.+...+|..+|..|.
T Consensus 32 ~q~~~Ql~~f~~~LeeFA~kH~~ei~knsqFR~~Fq~Mca~IGvDPl 78 (249)
T KOG3341|consen 32 VQMSKQLEVFQEALEEFARKHKTEIRKNSQFRNQFQEMCASIGVDPL 78 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHcCCCcc
Confidence 34566788888888888888888888888999999999999999996
No 124
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=22.69 E-value=3.4e+02 Score=23.40 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=9.3
Q ss_pred CHHHHHHHHHHHHHHHH
Q 013575 226 SNDTLARLAKTVLALKE 242 (440)
Q Consensus 226 s~~~l~~L~~~~~~L~~ 242 (440)
|...|+.|...++.|..
T Consensus 107 s~~dv~~L~~rId~L~~ 123 (132)
T PF05597_consen 107 SRKDVEALSARIDQLTA 123 (132)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 34455666666655544
No 125
>PRK09737 EcoKI restriction-modification system protein HsdS; Provisional
Probab=22.21 E-value=1e+02 Score=31.73 Aligned_cols=84 Identities=24% Similarity=0.299 Sum_probs=49.5
Q ss_pred CHHHHHhHHHHhccccccccCCCCCCCchHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCcchHHHH
Q 013575 268 PSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQ-AEVEVERLDQLKASRMKEIAFKRQGELEEIFARAHIEIDPVAAR 346 (440)
Q Consensus 268 ~~ee~~~F~~~~~~i~~s~~~~~~~~~lS~~~l~~-~e~El~RL~~lK~~~lk~li~~~r~el~elWd~~~~~~eer~~f 346 (440)
|.++|+.|......+.. ..+.+.. ++..++.|+++|+..|.+++ +.+|..=|...+-+
T Consensus 371 pl~EQ~kI~~~l~~l~~-----------~~d~i~~~~~~~l~~L~~lKqslLqk~f---tG~l~~~~~~~~~~------- 429 (461)
T PRK09737 371 PLEEQAEIVRRVEQLFA-----------YADTIEKQVNNALARVNNLTQSILAKAF---RGELTAQWRAENPS------- 429 (461)
T ss_pred CHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCccccccchhCcc-------
Confidence 35788888876542210 0233444 47788899999999998876 35655556322211
Q ss_pred HHhhhhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 013575 347 EKIMTLIDSGNVEPAELLADMDNQIAKAKEEA 378 (440)
Q Consensus 347 ~~~~~~~~s~~~~~eelL~~~E~Ei~rLk~~~ 378 (440)
.+. ++.-.+.||+.+-+|-+..-...
T Consensus 430 -----~~~-~~~~~~~~~~~~~~~~~~~~~~~ 455 (461)
T PRK09737 430 -----LIS-GENSAAALLEKIKAERAASGGKK 455 (461)
T ss_pred -----ccC-CcChHHHHHHHHHHHHhhccCCC
Confidence 112 22357788888776655443333
No 126
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=21.88 E-value=5.2e+02 Score=22.24 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=37.7
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhHHHHhc
Q 013575 221 QSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTC 280 (440)
Q Consensus 221 ~~~~ls~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~~LW~~L~i~~ee~~~F~~~~~ 280 (440)
.-++++++.++.+-..+.-|.....-...++.+ +.+.+|...+++..|..+..
T Consensus 74 ~vVgl~~~~i~~i~~~~~tLe~Llemsd~el~~-------~l~~~g~~~EE~rRL~~Al~ 126 (129)
T PF13543_consen 74 RVVGLRPESIQAILSKVLTLEALLEMSDEELKE-------ILNRCGAREEECRRLCRALS 126 (129)
T ss_pred hhcCCCHHHHHHHHHhhcCHHHHHhCCHHHHHH-------HHHHhCCCHHHHHHHHHHHH
Confidence 358899999999866666776666655554444 34446888889888887653
No 127
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=21.84 E-value=1.3e+03 Score=26.90 Aligned_cols=40 Identities=25% Similarity=0.349 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 98 TSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKI 137 (440)
Q Consensus 98 ~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L 137 (440)
.++.+++.=..=+.++..+.+...+|++++.+=+.++..+
T Consensus 174 eSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Y 213 (1200)
T KOG0964|consen 174 ESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKY 213 (1200)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4555555555556677777777778888777777766554
No 128
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=21.77 E-value=2e+02 Score=29.38 Aligned_cols=42 Identities=19% Similarity=0.330 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cCCCHH
Q 013575 229 TLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNL--------MDTPSE 270 (440)
Q Consensus 229 ~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~~LW~~--------L~i~~e 270 (440)
.|..+...+..+...-....+.+..+...|..||++ .|+|+.
T Consensus 152 ris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNiRIiGiPEg 201 (370)
T PF02994_consen 152 RISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNNIRIIGIPEG 201 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCceeEEecCCC
Confidence 455555556655555555566667788888899985 566654
No 129
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=21.74 E-value=6.5e+02 Score=23.32 Aligned_cols=92 Identities=10% Similarity=0.198 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 013575 100 GTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKS 179 (440)
Q Consensus 100 ~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~~~~~~~~~~~~~lS~e~L~~l~~~l~~L~~ek~ 179 (440)
.-|.+.+..+.+-+..|...-..+.+....+...|..+.+.|-......+ .-...+..|...++.|+....
T Consensus 112 ~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE---------~aERsVakLeke~DdlE~kl~ 182 (205)
T KOG1003|consen 112 EELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAE---------FAERRVAKLEKERDDLEEKLE 182 (205)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHH---------HHHHHHHHHcccHHHHHHhhH
Confidence 35666677777888888888888888888888899888887776553222 124677888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhC
Q 013575 180 DRLHKVLEFVSTVHDLCGVLG 200 (440)
Q Consensus 180 ~R~~~~~~l~~~I~~l~~~L~ 200 (440)
.+..+...+...|......|.
T Consensus 183 ~~k~ky~~~~~eLD~~~~~L~ 203 (205)
T KOG1003|consen 183 EAKEKYEEAKKELDETLQELE 203 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 888888888888777776654
No 130
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=21.50 E-value=8.1e+02 Score=24.35 Aligned_cols=120 Identities=15% Similarity=0.192 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCC
Q 013575 69 ALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLG 148 (440)
Q Consensus 69 ~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~~~ 148 (440)
.+..-..+...+....|.....+ |.+..-.-++.+.+..|+..++.....=..-...|......+.-|| +++...
T Consensus 99 ~L~~E~~ed~~~R~k~g~~~w~~-~~S~~~~~~l~~~~~k~~~~L~~A~~sD~~l~~~~~~~~~~l~lL~----~~~~~l 173 (342)
T cd08915 99 LLEEEAAEDDQLRAKFGTLRWRR-PSSDEAAKELYEKVTKLRGYLEQASNSDNEVLQCYESIDPNLVLLC----GGYKEL 173 (342)
T ss_pred HHHHHHHhhHHHHHHhCcccCCC-CChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc----CChHHH
Confidence 33333444455666777643321 1122334588888999999998888877777777777766665554 322110
Q ss_pred C-CCCCCC-CCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 149 D-QAPSVD-ESDL-TLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVH 193 (440)
Q Consensus 149 ~-~~~~~~-~~~l-S~e~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~ 193 (440)
. ..|+.. ..++ -...+..|+..+..+..-+.+|...+.+++..++
T Consensus 174 ~~~~Ps~~~~~~~~~~~~v~~Lr~~l~~l~~lk~eR~~~~~~lk~~~~ 221 (342)
T cd08915 174 KAFIPSPYPALDPEVSEVVSSLRPLLNEVSELEKERERFISELEIKSR 221 (342)
T ss_pred HHhCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 011111 1111 2367889999999999999999998888877643
No 131
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=21.47 E-value=4.4e+02 Score=21.27 Aligned_cols=69 Identities=17% Similarity=0.312 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 119 QKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGV 198 (440)
Q Consensus 119 ~k~~R~~~~~~l~~~i~~L~~~L~~~~~~~~~~~~~~~~~lS~e~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~l~~~ 198 (440)
++.....++..++.+-..++..+|.....+ +..+.+......+..+...-..++..+...+..++..
T Consensus 37 ~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~-------------~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~ 103 (108)
T PF02403_consen 37 ERRELQQELEELRAERNELSKEIGKLKKAG-------------EDAEELKAEVKELKEEIKELEEQLKELEEELNELLLS 103 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHTT-------------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhCc-------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444555556666666666666544322 1223444455555555555555555666666666654
Q ss_pred hC
Q 013575 199 LG 200 (440)
Q Consensus 199 L~ 200 (440)
++
T Consensus 104 iP 105 (108)
T PF02403_consen 104 IP 105 (108)
T ss_dssp S-
T ss_pred CC
Confidence 43
No 132
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=20.57 E-value=5.3e+02 Score=21.86 Aligned_cols=90 Identities=13% Similarity=0.281 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCC-------CCCCCCCCCCCCC---CHHHHHHHHHHHHH
Q 013575 104 EQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLS-------LGDQAPSVDESDL---TLKKLDEYQAQLQE 173 (440)
Q Consensus 104 ~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~-------~~~~~~~~~~~~l---S~e~L~~l~~~l~~ 173 (440)
.++..+..++..+-..|..--.++.++...+.. |+..+. .|+.+.-+..... -.++++.|..++..
T Consensus 13 ~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~E----le~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~t 88 (119)
T COG1382 13 AQLQQLQQQLQKVILQKQQLEAQLKEIEKALEE----LEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKT 88 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666655555555555554444433 333322 1211111111111 24566677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 174 LQKEKSDRLHKVLEFVSTVHDLCG 197 (440)
Q Consensus 174 L~~ek~~R~~~~~~l~~~I~~l~~ 197 (440)
|++.-..-...|..+...|....+
T Consensus 89 LekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 89 LEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 776666666666677777766554
No 133
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=20.49 E-value=3.4e+02 Score=28.19 Aligned_cols=82 Identities=16% Similarity=0.214 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 54 RKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQ 133 (440)
Q Consensus 54 ~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~ 133 (440)
..+-.....+..+..+++.++++.+.+.+++|..... ..+ ....+..++.+++.+...--+++..+.++
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~------~~~-----~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 98 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQ------KKD-----KIEEIKKELKELKEELTELSAALKALEAE 98 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------Ccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777788999999999999999999873221 111 02234444444444444444566667777
Q ss_pred HHHHHhHhcCCCC
Q 013575 134 IQKICGEIAGNLS 146 (440)
Q Consensus 134 i~~L~~~L~~~~~ 146 (440)
+..+...|...++
T Consensus 99 ~~~~~~~lPN~~~ 111 (418)
T TIGR00414 99 LQDKLLSIPNIPH 111 (418)
T ss_pred HHHHHHhCCCCCC
Confidence 7776666665543
No 134
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=20.44 E-value=3.2e+02 Score=26.79 Aligned_cols=77 Identities=23% Similarity=0.236 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhHHhHHHHHhhhhhhhhcccccccC-cccCccccccCcccccc
Q 013575 360 PAELLADMDNQIAKAKEEAHSRKEILDKVEKWMSACEEESWLEDYNRVLRISLFLPLSFP-VLPCIPVHESGCVDPWA 436 (440)
Q Consensus 360 ~eelL~~~E~Ei~rLk~~~~~~k~Il~~vek~~~l~~e~~~Lee~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 436 (440)
.-......-..+..++..+..+...=....+......+-.-|++=|+++|-.+..+.+.+ .-+.++.+-+...|||.
T Consensus 54 p~~~v~~~~~~~~~~~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~~~~~~~~~~~~a~Vi~~~~~~~~ 131 (284)
T COG1792 54 PFEFVDGVLEFLKSLKDLALENEELKKELAELEQLLEEVESLEEENKRLKELLDFKESSSDYDPIAARVISRSPDPWS 131 (284)
T ss_pred HHHHHHhHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccceeeEEEEecCCchh
Confidence 444555555556666666666655555556666666677778888898988888888664 45577777788888874
No 135
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=20.28 E-value=8.7e+02 Score=24.22 Aligned_cols=35 Identities=20% Similarity=0.159 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 225 ISNDTLARLAKTVLALKEDKKQRLHKLQELATQLI 259 (440)
Q Consensus 225 ls~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~ 259 (440)
-....+..|+..+.+++..+.+|..-+.+++..++
T Consensus 185 ~~~~~v~~Lr~ll~kl~~lk~eR~~l~~~Lk~k~~ 219 (337)
T cd09234 185 EDEAIEKELKRILNKVNEMRKQRRSLEQQLRDAIH 219 (337)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567999999999999999999999888877654
No 136
>PF10654 DUF2481: Protein of unknown function (DUF2481) ; InterPro: IPR018916 This entry is represented by Bacteriophage A500, Gp59. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.21 E-value=5.3e+02 Score=21.70 Aligned_cols=100 Identities=10% Similarity=0.014 Sum_probs=59.4
Q ss_pred cCCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhHHHHhccccccccCCCCCCCchHH
Q 013575 223 KSISNDTLARLAKTVLALKED----KKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALD 298 (440)
Q Consensus 223 ~~ls~~~l~~L~~~~~~L~~~----K~~r~~~~~~l~~~l~~LW~~L~i~~ee~~~F~~~~~~i~~s~~~~~~~~~lS~~ 298 (440)
.+|+.+.+..|++++..|..+ |...--.+.--+.-+..=|..+-|- .|... ++.+-|-+.|.++.++|.+
T Consensus 22 ~dl~~~~~k~LqkeLn~Lm~~nTEeK~kt~~~kt~~r~v~~K~we~iti~-----Efi~L-R~AGlt~~aIAd~F~iS~s 95 (126)
T PF10654_consen 22 NDLSFSKRKELQKELNQLMNENTEEKMKTYWTKTFDRIVGNKNWEEITIR-----EFIEL-RHAGLTCYAIADYFKISKS 95 (126)
T ss_pred CCCChHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcccHhHhhHH-----HHHHH-HhcCCChHHHHHHHhHHHH
Confidence 445556677777777777543 2222222222344455667777653 46653 3344444556667788888
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 013575 299 LIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFA 334 (440)
Q Consensus 299 ~l~~~e~El~RL~~lK~~~lk~li~~~r~el~elWd 334 (440)
|+-++. +.-|+..-+-|..+....=.++|+
T Consensus 96 ~~~nft------~~n~~eYyr~F~~~~y~~nKe~w~ 125 (126)
T PF10654_consen 96 TVFNFT------QNNKKEYYRIFDMDEYQKNKEIWN 125 (126)
T ss_pred HHHHHH------HHhHHHHHHHhhHHHHHHHHHhcc
Confidence 998886 344555556677777777777775
No 137
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=20.07 E-value=1.2e+03 Score=25.90 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCC
Q 013575 158 DLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLC-GVLGM 201 (440)
Q Consensus 158 ~lS~e~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~l~-~~L~~ 201 (440)
......+..|+..+..+++...+-...|..-.......| ..||.
T Consensus 602 ~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~~llGy 646 (722)
T PF05557_consen 602 ESQEKEIAELKAELASAEKRNQRLKEVFKAKSQEFREAVYSLLGY 646 (722)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSE
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344556888999999888777766666666665555544 56684
Done!