Query 013575
Match_columns 440
No_of_seqs 156 out of 496
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 13:09:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013575.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013575hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nrx_A Protein regulator of cy 97.0 0.00039 1.3E-08 58.6 3.8 35 372-406 3-37 (130)
2 1i84_S Smooth muscle myosin he 76.9 17 0.00057 41.4 12.6 35 105-139 907-941 (1184)
3 1i84_S Smooth muscle myosin he 76.4 2.8 9.5E-05 47.8 6.0 13 364-376 1153-1165(1184)
4 2v71_A Nuclear distribution pr 72.8 50 0.0017 29.1 16.2 88 100-199 6-93 (189)
5 3ghg_A Fibrinogen alpha chain; 70.2 6.9 0.00023 39.8 6.3 94 101-200 54-148 (562)
6 1go4_E MAD1 (mitotic arrest de 66.9 44 0.0015 26.2 9.2 45 159-205 9-53 (100)
7 1go4_E MAD1 (mitotic arrest de 64.1 30 0.001 27.2 7.6 41 221-261 5-45 (100)
8 1deq_A Fibrinogen (alpha chain 61.5 45 0.0015 32.5 9.9 95 101-200 57-151 (390)
9 2lw9_A Unconventionnal myosin- 55.9 21 0.00072 24.0 4.6 39 297-335 5-43 (51)
10 3na7_A HP0958; flagellar bioge 51.9 1.4E+02 0.0048 27.2 23.9 112 53-200 17-128 (256)
11 3ghg_A Fibrinogen alpha chain; 50.8 62 0.0021 32.9 9.2 36 297-333 116-151 (562)
12 1l8d_A DNA double-strand break 50.4 89 0.003 24.4 12.0 88 104-199 10-101 (112)
13 1kd8_B GABH BLL, GCN4 acid bas 47.2 46 0.0016 20.8 4.8 31 105-135 2-32 (36)
14 1deq_A Fibrinogen (alpha chain 45.6 2E+02 0.0068 28.0 11.5 101 28-136 42-145 (390)
15 2jo8_A Serine/threonine-protei 44.8 22 0.00074 24.4 3.4 25 365-389 24-49 (51)
16 1l8d_A DNA double-strand break 44.3 1.1E+02 0.0038 23.8 9.0 86 53-141 16-101 (112)
17 3oja_B Anopheles plasmodium-re 43.0 2.8E+02 0.0097 28.1 14.5 78 161-258 455-532 (597)
18 3okq_A BUD site selection prot 41.9 50 0.0017 27.5 5.9 40 363-402 62-103 (141)
19 2jee_A YIIU; FTSZ, septum, coi 41.8 1.1E+02 0.0037 23.0 8.5 71 55-140 7-77 (81)
20 3lay_A Zinc resistance-associa 38.7 1.9E+02 0.0065 24.9 11.6 65 223-315 66-130 (175)
21 2yy0_A C-MYC-binding protein; 38.4 67 0.0023 22.0 5.2 30 113-142 21-50 (53)
22 2yy0_A C-MYC-binding protein; 36.2 71 0.0024 21.9 5.0 30 56-85 21-50 (53)
23 3c3f_A Alpha/beta peptide with 34.3 82 0.0028 19.4 4.4 29 105-133 2-30 (34)
24 2bni_A General control protein 32.4 71 0.0024 19.8 3.9 29 105-133 2-30 (34)
25 2lw1_A ABC transporter ATP-bin 31.4 1.7E+02 0.0057 22.0 8.9 30 61-90 22-51 (89)
26 2oxj_A Hybrid alpha/beta pepti 31.1 95 0.0033 19.1 4.4 29 105-133 2-30 (34)
27 1yf2_A Type I restriction-modi 30.1 57 0.0019 31.4 5.3 41 268-322 377-417 (425)
28 1quu_A Human skeletal muscle a 29.3 3E+02 0.01 24.4 15.6 144 20-191 96-244 (250)
29 1kd8_A GABH AIV, GCN4 acid bas 29.0 89 0.0031 19.5 4.0 31 105-135 2-32 (36)
30 3vkg_A Dynein heavy chain, cyt 28.5 6.5E+02 0.022 31.9 14.9 168 16-198 1936-2106(3245)
31 1nfn_A Apolipoprotein E3; lipi 27.9 2.7E+02 0.0092 24.2 8.8 65 55-129 93-157 (191)
32 3oja_B Anopheles plasmodium-re 27.8 4.8E+02 0.017 26.3 17.8 124 53-203 462-585 (597)
33 3oja_A Leucine-rich immune mol 27.3 4.1E+02 0.014 26.2 11.4 71 50-142 417-487 (487)
34 1ydx_A Type I restriction enzy 25.3 74 0.0025 30.7 5.1 41 268-322 353-393 (406)
35 2hy6_A General control protein 25.2 1.3E+02 0.0043 18.6 4.2 29 105-133 2-30 (34)
36 2q0o_C Probable transcriptiona 25.2 1.6E+02 0.0053 23.2 5.8 33 169-201 65-97 (107)
37 1yzm_A FYVE-finger-containing 24.6 1E+02 0.0034 21.1 4.0 40 100-141 5-44 (51)
38 3v1a_A Computational design, M 24.5 82 0.0028 21.2 3.5 41 100-142 4-44 (48)
39 2dq3_A Seryl-tRNA synthetase; 23.5 1.6E+02 0.0055 29.1 7.3 81 54-146 30-110 (425)
40 3c3g_A Alpha/beta peptide with 23.4 1.3E+02 0.0046 18.3 4.4 28 106-133 2-29 (33)
41 2dfs_A Myosin-5A; myosin-V, in 23.4 4.3E+02 0.015 29.6 11.3 18 234-251 1022-1039(1080)
42 3cuq_A Vacuolar-sorting protei 23.0 1.4E+02 0.0046 27.2 6.0 49 99-147 9-57 (234)
43 3qne_A Seryl-tRNA synthetase, 22.7 2.4E+02 0.0082 28.5 8.3 79 56-146 35-113 (485)
44 3viq_A SWI5-dependent recombin 22.7 1.6E+02 0.0054 23.9 5.7 47 364-410 16-70 (122)
45 1m1j_A Fibrinogen alpha subuni 22.3 98 0.0034 30.9 5.1 94 101-199 55-148 (491)
46 2dq0_A Seryl-tRNA synthetase; 22.2 2.9E+02 0.0098 27.6 8.8 81 54-146 31-111 (455)
47 1ses_A Seryl-tRNA synthetase; 21.8 5.7E+02 0.02 25.0 11.4 79 54-146 28-106 (421)
48 1t3j_A Mitofusin 1; coiled coi 21.1 1.9E+02 0.0064 22.4 5.5 61 46-118 32-92 (96)
49 3iv1_A Tumor susceptibility ge 20.9 1.4E+02 0.0047 22.3 4.5 35 50-84 42-76 (78)
50 3hd7_A Vesicle-associated memb 20.8 1.2E+02 0.0043 23.0 4.5 50 296-346 3-52 (91)
51 1g6u_A Domain swapped dimer; d 20.8 1.7E+02 0.0059 18.6 5.2 29 223-251 15-43 (48)
52 3htk_A Structural maintenance 20.5 2.1E+02 0.0072 19.5 6.3 37 101-137 2-38 (60)
53 1yf2_A Type I restriction-modi 20.2 1.3E+02 0.0046 28.6 5.8 41 269-323 168-208 (425)
No 1
>3nrx_A Protein regulator of cytokinesis 1; spectrin fold, microtubule binding domain, protein binding; 1.75A {Homo sapiens} PDB: 3nry_A
Probab=97.04 E-value=0.00039 Score=58.57 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=32.8
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHhHHhHHHHHhhh
Q 013575 372 AKAKEEAHSRKEILDKVEKWMSACEEESWLEDYNR 406 (440)
Q Consensus 372 ~rLk~~~~~~k~Il~~vek~~~l~~e~~~Lee~~r 406 (440)
++|+++|++|+|||++|++|..++.+...|++|++
T Consensus 3 ~rLk~~y~~~k~Ile~vekweelw~~~~eLE~~~~ 37 (130)
T 3nrx_A 3 AALKNYYEVHKELFEGVQKWEETWRLFLEFERKAS 37 (130)
T ss_dssp CHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 58999999999999999999999999999999985
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=76.91 E-value=17 Score=41.41 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013575 105 QLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICG 139 (440)
Q Consensus 105 ~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~ 139 (440)
.+..+...+..+...+.+...++.++..++..+-.
T Consensus 907 ~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~ee 941 (1184)
T 1i84_S 907 LYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEE 941 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555444433
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=76.35 E-value=2.8 Score=47.83 Aligned_cols=13 Identities=8% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q 013575 364 LADMDNQIAKAKE 376 (440)
Q Consensus 364 L~~~E~Ei~rLk~ 376 (440)
++.+..+|..+..
T Consensus 1153 le~L~~~Ieel~~ 1165 (1184)
T 1i84_S 1153 LEALKTELEDTLD 1165 (1184)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHhh
Confidence 3334444444433
No 4
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=72.81 E-value=50 Score=29.10 Aligned_cols=88 Identities=18% Similarity=0.137 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 013575 100 GTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKS 179 (440)
Q Consensus 100 ~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~~~~~~~~~~~~~lS~e~L~~l~~~l~~L~~ek~ 179 (440)
.|.-+....++..+..+.....+-..+|.+.+..=..|-.+|...-. -+..+...|+..+..|..+..
T Consensus 6 ~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~------------~~Ek~~~~L~~~~~~L~~E~e 73 (189)
T 2v71_A 6 SSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLV------------QAEQRNRDLQADNQRLKYEVE 73 (189)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999888888777765432 156677777788888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 013575 180 DRLHKVLEFVSTVHDLCGVL 199 (440)
Q Consensus 180 ~R~~~~~~l~~~I~~l~~~L 199 (440)
.=..++....+.-..-.+.|
T Consensus 74 ~~k~K~~~~~~e~~~~~~~L 93 (189)
T 2v71_A 74 ALKEKLEHQYAQSYKQVSVL 93 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666655543333333
No 5
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=70.24 E-value=6.9 Score=39.77 Aligned_cols=94 Identities=15% Similarity=0.200 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHHHHHHH
Q 013575 101 TIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLD-EYQAQLQELQKEKS 179 (440)
Q Consensus 101 sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~~~~~~~~~~~~~lS~e~L~-~l~~~l~~L~~ek~ 179 (440)
+|.++...+...|++|+.++++-.+-.++.-.-...+.+.|-....... +.+-+.-++. .|+.++..|+.+.+
T Consensus 54 lLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~------dNdNtynE~S~ELRRrIqyLKekVd 127 (562)
T 3ghg_A 54 LIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN------NRDNTYNRVSEDLRSRIEVLKRKVI 127 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH------HHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh------ccchhHHHHHHHHHHHHHHHHHHHH
Confidence 5677788889999999999888888888777777777777765432100 0111222333 78888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhC
Q 013575 180 DRLHKVLEFVSTVHDLCGVLG 200 (440)
Q Consensus 180 ~R~~~~~~l~~~I~~l~~~L~ 200 (440)
.-+..++.|++.|.++...|.
T Consensus 128 nQlsnIrvLQsnLedq~~kIQ 148 (562)
T 3ghg_A 128 EKVQHIQLLQKNVRAQLVDMK 148 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877777765554
No 6
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=66.95 E-value=44 Score=26.23 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Q 013575 159 LTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFS 205 (440)
Q Consensus 159 lS~e~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~l~~~L~~~~~~ 205 (440)
+|.+.+..++..++.|+.|...-......+-..+.... |..+|+.
T Consensus 9 ~~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~--l~Gd~~~ 53 (100)
T 1go4_E 9 FSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRA--LQGDYDQ 53 (100)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS--CCSCCCT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccCC
Confidence 38999999999999999999866666666666665442 5445543
No 7
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=64.11 E-value=30 Score=27.24 Aligned_cols=41 Identities=22% Similarity=0.144 Sum_probs=33.0
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 221 QSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDL 261 (440)
Q Consensus 221 ~~~~ls~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~~L 261 (440)
.++++|.+.+..|+..++.|+.+...-.+++..|-.++...
T Consensus 5 ~~~~~~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 5 QSFLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999998888888888888654
No 8
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=61.52 E-value=45 Score=32.49 Aligned_cols=95 Identities=11% Similarity=0.169 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013575 101 TIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSD 180 (440)
Q Consensus 101 sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~~~~~~~~~~~~~lS~e~L~~l~~~l~~L~~ek~~ 180 (440)
+|.++...++.+++.|+.....-.+...+.-.-+..+.+.|........ +....=.+-.+.|+.++..|+.....
T Consensus 57 ~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~-----dndn~~~e~s~eLe~~i~~lk~~V~~ 131 (390)
T 1deq_A 57 LIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKAN-----NNDNTFKQINEDLRSRIEILRRKVIE 131 (390)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666678888889998888888888888877777777777766543111 11122245556777788888777776
Q ss_pred HHHHHHHHHHHHHHHHHHhC
Q 013575 181 RLHKVLEFVSTVHDLCGVLG 200 (440)
Q Consensus 181 R~~~~~~l~~~I~~l~~~L~ 200 (440)
-+..+..|+..|.++...|.
T Consensus 132 q~~~ir~Lq~~l~~q~~kiq 151 (390)
T 1deq_A 132 QVQRINLLQKNVRDQLVDMK 151 (390)
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 66666666666665554443
No 9
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=55.91 E-value=21 Score=24.00 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 013575 297 LDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFAR 335 (440)
Q Consensus 297 ~~~l~~~e~El~RL~~lK~~~lk~li~~~r~el~elWd~ 335 (440)
.+-|-.++.|+++|+..|...+..+-..++.+|..+-|.
T Consensus 5 ~EEILRLErEIE~Lqrqke~~~~~L~e~s~~eL~~~RD~ 43 (51)
T 2lw9_A 5 VEEILRLEKEIEDLQRMKEQQELSLTEASLQKLQERRDQ 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 456778999999999999999999999999998887664
No 10
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=51.88 E-value=1.4e+02 Score=27.18 Aligned_cols=112 Identities=7% Similarity=0.072 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 53 KRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQS 132 (440)
Q Consensus 53 ~~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~ 132 (440)
+..+.+....+..+-..++.+..++..+ ...+..++..++.+.......-..+..+..
T Consensus 17 D~~i~~l~~~~~~lp~el~~le~~~~~l----------------------~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ 74 (256)
T 3na7_A 17 DKEIDSLEPLIREKRKDLDKALNDKEAK----------------------NKAILNLEEEKLALKLQVSKNEQTLQDTNA 74 (256)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555666666665555544 456777788888888888888888888888
Q ss_pred HHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013575 133 QIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLG 200 (440)
Q Consensus 133 ~i~~L~~~L~~~~~~~~~~~~~~~~~lS~e~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~l~~~L~ 200 (440)
.+...-..|+... +...+..|...++.++.+....-..+..+...+..+-..+.
T Consensus 75 ri~~~~~~l~~v~--------------~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~ 128 (256)
T 3na7_A 75 KIASIQKKMSEIK--------------SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQE 128 (256)
T ss_dssp HHHHHHHHHHHCS--------------SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877775321 56677888888888888887777777777777766655544
No 11
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=50.78 E-value=62 Score=32.93 Aligned_cols=36 Identities=8% Similarity=-0.039 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 013575 297 LDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIF 333 (440)
Q Consensus 297 ~~~l~~~e~El~RL~~lK~~~lk~li~~~r~el~elW 333 (440)
...|..++.+|+.-- -..+.|+..|.+.+.+|..|=
T Consensus 116 RRrIqyLKekVdnQl-snIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 116 RSRIEVLKRKVIEKV-QHIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 556667777776554 344556666777777776663
No 12
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=50.38 E-value=89 Score=24.44 Aligned_cols=88 Identities=11% Similarity=0.140 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCH----HHHHHHHHHHHHHHHHHH
Q 013575 104 EQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTL----KKLDEYQAQLQELQKEKS 179 (440)
Q Consensus 104 ~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~~~~~~~~~~~~~lS~----e~L~~l~~~l~~L~~ek~ 179 (440)
+.+..++.++..++..+.....++..+...+..+-..=+..|. ++..++. ..+..+...+..++.++.
T Consensus 10 ~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPv--------Cgs~l~~~~~~~~i~~~~~~l~~l~~~i~ 81 (112)
T 1l8d_A 10 TKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPV--------CGRELTDEHREELLSKYHLDLNNSKNTLA 81 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTT--------TCCEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC--------CCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666665555555555555555444221111222 2333333 345555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 013575 180 DRLHKVLEFVSTVHDLCGVL 199 (440)
Q Consensus 180 ~R~~~~~~l~~~I~~l~~~L 199 (440)
.-...+..+...+..+-..+
T Consensus 82 ~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 82 KLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444445544444444433
No 13
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=47.16 E-value=46 Score=20.84 Aligned_cols=31 Identities=6% Similarity=0.100 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 105 QLAAIAPALEQLWKQKEERVKEFSDVQSQIQ 135 (440)
Q Consensus 105 ~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~ 135 (440)
+.+.|..++++|..++.+...++..++.-+.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 4677889999999999988888887776553
No 14
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=45.56 E-value=2e+02 Score=28.01 Aligned_cols=101 Identities=10% Similarity=0.206 Sum_probs=48.7
Q ss_pred HHhCC--ChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHH
Q 013575 28 DEVGE--NDEER-DKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKE 104 (440)
Q Consensus 28 ~eiG~--~~~er-~~~l~~l~~~~~~~~~~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~ 104 (440)
+++|. |.-+| ..+|...++. +...|++++...+.+.+...+...-...+...+....-. ....+-..-+
T Consensus 42 eDwG~kCPsGCrLqg~Ldk~er~----~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q----~~dndn~~~e 113 (390)
T 1deq_A 42 EDWNTKCPSGCRMKGLIDEVDQD----FTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAK----ANNNDNTFKQ 113 (390)
T ss_pred hhccCCCCccchHHHHHHHhhhh----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh----hccchHHHHH
Confidence 56666 44455 3344444443 345666666666666666555555555555555433211 1122333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 105 QLAAIAPALEQLWKQKEERVKEFSDVQSQIQK 136 (440)
Q Consensus 105 ~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~ 136 (440)
-...|+.++..|+.....-+..+..|+..|++
T Consensus 114 ~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~ 145 (390)
T 1deq_A 114 INEDLRSRIEILRRKVIEQVQRINLLQKNVRD 145 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44455555555554444444444444444333
No 15
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=44.76 E-value=22 Score=24.36 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHh-chHHHHHHH
Q 013575 365 ADMDNQIAKAKEEAHS-RKEILDKVE 389 (440)
Q Consensus 365 ~~~E~Ei~rLk~~~~~-~k~Il~~ve 389 (440)
..+|.||..+...|.. |+||++.|+
T Consensus 24 ~~Me~Ei~elr~RY~~KRqPIldAi~ 49 (51)
T 2jo8_A 24 PMMEQEIEEIRQKYQSKRQPILDAIE 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhHhhHHHHHh
Confidence 4789999999887754 599999885
No 16
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=44.27 E-value=1.1e+02 Score=23.83 Aligned_cols=86 Identities=16% Similarity=0.136 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 53 KRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQS 132 (440)
Q Consensus 53 ~~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~ 132 (440)
...+.+....+..+...+..+...+..+-.. | .++|. |+++-.+-........+..++..+.........++..+..
T Consensus 16 ~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~-g-~~CPv-Cgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~ 92 (112)
T 1l8d_A 16 EEERNEITQRIGELKNKIGDLKTAIEELKKA-K-GKCPV-CGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELER 92 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-S-EECTT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C-CCCCC-CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555444211 1 12221 2222222111233455555666666555555555555555
Q ss_pred HHHHHHhHh
Q 013575 133 QIQKICGEI 141 (440)
Q Consensus 133 ~i~~L~~~L 141 (440)
.+..+-..+
T Consensus 93 ~~~~l~~~~ 101 (112)
T 1l8d_A 93 ELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554443
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=43.02 E-value=2.8e+02 Score=28.11 Aligned_cols=78 Identities=17% Similarity=0.157 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHH
Q 013575 161 LKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLAL 240 (440)
Q Consensus 161 ~e~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~l~~~L~~~~~~~~~e~~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L 240 (440)
.+.+..++..+..++.+...-...+..+...|......+....+... ...+.+.+.++.+
T Consensus 455 ~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~ 514 (597)
T 3oja_B 455 EAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLA--------------------RSSDNLNKVFTHL 514 (597)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSS--------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccC--------------------CHHHHHHHHHHHH
Confidence 45677888888888888888888888888888888887776432220 1125555555555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013575 241 KEDKKQRLHKLQELATQL 258 (440)
Q Consensus 241 ~~~K~~r~~~~~~l~~~l 258 (440)
++..+....+.+.....+
T Consensus 515 ~~~~~~~~~~~~~~~~~~ 532 (597)
T 3oja_B 515 KERQAFKLRETQARRTEA 532 (597)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhHHHHHHHHHhh
Confidence 555555544444444443
No 18
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=41.87 E-value=50 Score=27.54 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHhchHHHHHH--HHHHHHhHHhHHHH
Q 013575 363 LLADMDNQIAKAKEEAHSRKEILDKV--EKWMSACEEESWLE 402 (440)
Q Consensus 363 lL~~~E~Ei~rLk~~~~~~k~Il~~v--ek~~~l~~e~~~Le 402 (440)
=+.....++..++.+...=||++..+ .+.+..|+|+.||-
T Consensus 62 di~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~VceEQqfl~ 103 (141)
T 3okq_A 62 DLENAQADVLKLQEFIDTEKPHWKKTWEAELDKVCEEQQFLT 103 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence 35677888889999999999999988 77788899998883
No 19
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=41.84 E-value=1.1e+02 Score=23.01 Aligned_cols=71 Identities=13% Similarity=0.225 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 55 KVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQI 134 (440)
Q Consensus 55 ~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i 134 (440)
.+++.+....+....|..++-++..|-. ...+|.+....++..-+.+..+-.+..++....++.+
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKe---------------kN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKE---------------KNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555544421 1223444444444444444444444445555555555
Q ss_pred HHHHhH
Q 013575 135 QKICGE 140 (440)
Q Consensus 135 ~~L~~~ 140 (440)
+.|...
T Consensus 72 ~~LLgk 77 (81)
T 2jee_A 72 QALLGR 77 (81)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555443
No 20
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=38.73 E-value=1.9e+02 Score=24.93 Aligned_cols=65 Identities=14% Similarity=0.051 Sum_probs=45.3
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhHHHHhccccccccCCCCCCCchHHHHHH
Q 013575 223 KSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQ 302 (440)
Q Consensus 223 ~~ls~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~~LW~~L~i~~ee~~~F~~~~~~i~~s~~~~~~~~~lS~~~l~~ 302 (440)
.+||++--+++++..++.........+++...+.++..|+..=.+ ....|++
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~----------------------------DeakI~a 117 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSP----------------------------DTAKINA 117 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSC----------------------------CHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----------------------------CHHHHHH
Confidence 789999999999999988887777766777777777666543222 2567777
Q ss_pred HHHHHHHHHHHHH
Q 013575 303 AEVEVERLDQLKA 315 (440)
Q Consensus 303 ~e~El~RL~~lK~ 315 (440)
+..|+..|+....
T Consensus 118 L~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 118 VAKEMESLGQKLD 130 (175)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777665443
No 21
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=38.40 E-value=67 Score=22.04 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 013575 113 LEQLWKQKEERVKEFSDVQSQIQKICGEIA 142 (440)
Q Consensus 113 le~l~~~k~~R~~~~~~l~~~i~~L~~~L~ 142 (440)
++.|+.+..+...++..+..++..+++.|.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444455555555555555543
No 22
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=36.20 E-value=71 Score=21.90 Aligned_cols=30 Identities=17% Similarity=0.085 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013575 56 VEQAAKSRAQLLQALSDAKIELASLLSALG 85 (440)
Q Consensus 56 vee~~~~k~~l~~~i~~~~~el~~L~~eLg 85 (440)
++..+.+.+.+...++.+.++++.+++.|.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455556677778888888888888888775
No 23
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=34.29 E-value=82 Score=19.39 Aligned_cols=29 Identities=14% Similarity=0.215 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 105 QLAAIAPALEQLWKQKEERVKEFSDVQSQ 133 (440)
Q Consensus 105 ~l~~l~~~le~l~~~k~~R~~~~~~l~~~ 133 (440)
+.+.|..++++|-.++.....++..+++-
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45678889999988888877777766653
No 24
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=32.37 E-value=71 Score=19.75 Aligned_cols=29 Identities=14% Similarity=0.314 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 105 QLAAIAPALEQLWKQKEERVKEFSDVQSQ 133 (440)
Q Consensus 105 ~l~~l~~~le~l~~~k~~R~~~~~~l~~~ 133 (440)
+.+.|..++++|-.++.....++..+++-
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 45678889999998888877777766653
No 25
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=31.36 E-value=1.7e+02 Score=22.04 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 013575 61 KSRAQLLQALSDAKIELASLLSALGEKSIA 90 (440)
Q Consensus 61 ~~k~~l~~~i~~~~~el~~L~~eLg~~~~~ 90 (440)
++.+.+-..|+.+..++..|-..|++|.++
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~ladp~~y 51 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVADASFF 51 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 445677888999999999999999999865
No 26
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=31.08 E-value=95 Score=19.15 Aligned_cols=29 Identities=7% Similarity=0.212 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 105 QLAAIAPALEQLWKQKEERVKEFSDVQSQ 133 (440)
Q Consensus 105 ~l~~l~~~le~l~~~k~~R~~~~~~l~~~ 133 (440)
+.+.|..++++|-.++.+...++..+++-
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 45678889999988888877777766653
No 27
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=30.07 E-value=57 Score=31.36 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=34.4
Q ss_pred CHHHHHhHHHHhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 013575 268 PSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIA 322 (440)
Q Consensus 268 ~~ee~~~F~~~~~~i~~s~~~~~~~~~lS~~~l~~~e~El~RL~~lK~~~lk~li 322 (440)
|.++|+.|......+ +..|+.++.+++.|+++|+..|.+++
T Consensus 377 pl~eQ~~I~~~l~~l--------------d~~i~~~~~~~~~l~~~k~~Ll~~l~ 417 (425)
T 1yf2_A 377 PLEEQKQIAKILSSV--------------DKSIELKKQKKEKLQRMKKKIMELLL 417 (425)
T ss_dssp CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 468899998877533 67889999999999999999998876
No 28
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=29.26 E-value=3e+02 Score=24.36 Aligned_cols=144 Identities=13% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Q 013575 20 LHKLQEIWDEVGENDEERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTS 99 (440)
Q Consensus 20 l~~L~~IW~eiG~~~~er~~~l~~l~~~~~~~~~~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~ 99 (440)
+.+|..-|+.+.-.-..|...+..... .....+..+-++......+..=+..--..|+.+.+.. +...-
T Consensus 96 ~~~l~~~W~~L~~~~~~R~~~L~~~l~--------~~~~~d~l~~qF~~~a~~~~~Wl~~~e~~l~~~~~~~---d~e~v 164 (250)
T 1quu_A 96 CQKICDQWDRLGTLTQKRREALERMEK--------LLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVH---SIEEI 164 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCCC---STTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccccC---CHHHH
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc-----CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 013575 100 GTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIA-----GNLSLGDQAPSVDESDLTLKKLDEYQAQLQEL 174 (440)
Q Consensus 100 ~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~-----~~~~~~~~~~~~~~~~lS~e~L~~l~~~l~~L 174 (440)
-.|.++.+.+...+..+... ...+..+...+..+....+ ..|+ +...+..+...-+.+
T Consensus 165 ~~ll~~h~~~~~~l~~~~~~----~~~i~~l~~~~~~l~~~~~~~~~~~~~~-------------~~~~~~~l~~~W~~L 227 (250)
T 1quu_A 165 QSLITAHEQFKATLPEADGE----RQSIMAIQNEVEKVIQSYNIRISSSNPY-------------STVTMDELRTKWDKV 227 (250)
T ss_dssp HHHHHHHHHHHTHHHHHHHH----HHHHHHHHHHHHHHHHHSCTTSCCSCTT-------------CSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcccccCCCCCc-------------ccCcHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013575 175 QKEKSDRLHKVLEFVST 191 (440)
Q Consensus 175 ~~ek~~R~~~~~~l~~~ 191 (440)
..-...|...+......
T Consensus 228 ~~~~~~R~~~L~~~l~~ 244 (250)
T 1quu_A 228 KQLVPIRDQSLQEELAR 244 (250)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
No 29
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=29.03 E-value=89 Score=19.52 Aligned_cols=31 Identities=6% Similarity=0.124 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 105 QLAAIAPALEQLWKQKEERVKEFSDVQSQIQ 135 (440)
Q Consensus 105 ~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~ 135 (440)
+.+.|..++++|-.++...-.++..++..+.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 3467888999999999888888877776543
No 30
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=28.47 E-value=6.5e+02 Score=31.92 Aligned_cols=168 Identities=18% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC
Q 013575 16 CSSLLHKLQEIWDEVGENDEERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIP 95 (440)
Q Consensus 16 ~~~~l~~L~~IW~eiG~~~~er~~~l~~l~~~~~~~~~~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~ 95 (440)
.+.+-.+|...=-++-....+-+.++.++..+ ...+++.+.......+.++.-.++++.+..+....-..- .
T Consensus 1936 V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~-----~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A---~ 2007 (3245)
T 3vkg_A 1936 VKDLQVSLAQKNRELDVKNEQANQKLKQMVQD-----QQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKA---E 2007 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---C
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCC---CCCCCCCCCCCCCCHHHHHHHHHHHH
Q 013575 96 EKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLS---LGDQAPSVDESDLTLKKLDEYQAQLQ 172 (440)
Q Consensus 96 ~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~---~~~~~~~~~~~~lS~e~L~~l~~~l~ 172 (440)
|. .|++++++.+..+++..+.+...-..++.++.+.+..|-+....... .... .......+|++=...+.
T Consensus 2008 Pa--~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~-----e~~~~~~kl~rA~~Li~ 2080 (3245)
T 3vkg_A 2008 PT--GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKT-----ESSKVKNKVDRSIALLD 2080 (3245)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
T ss_pred CC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 173 ELQKEKSDRLHKVLEFVSTVHDLCGV 198 (440)
Q Consensus 173 ~L~~ek~~R~~~~~~l~~~I~~l~~~ 198 (440)
.|-.|+.+=.+.+..+...+..|...
T Consensus 2081 gL~~Ek~RW~~~~~~l~~~~~~L~GD 2106 (3245)
T 3vkg_A 2081 NLNSERGRWEQQSENFNTQMSTVVGD 2106 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccHHHHHHHHHHHHHhccHH
No 31
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=27.89 E-value=2.7e+02 Score=24.19 Aligned_cols=65 Identities=14% Similarity=0.105 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 55 KVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSD 129 (440)
Q Consensus 55 ~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~ 129 (440)
.-.+.+..+.++.+++.+++..+.-...+|...... .+-+-...+.+..++++.....++++|..
T Consensus 93 l~~~~e~lr~~l~kdlEelr~kL~P~~eEL~~~l~~----------~~Eelr~~L~Py~eelr~kl~~~~eeLr~ 157 (191)
T 1nfn_A 93 LSKELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQ----------STEELRVRLASHLRKLRKRLLRDADDLQK 157 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----------HHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 445666778888889999999988888888655432 34445567777888888887777776554
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=27.84 E-value=4.8e+02 Score=26.29 Aligned_cols=124 Identities=11% Similarity=0.052 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 53 KRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQS 132 (440)
Q Consensus 53 ~~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~ 132 (440)
+..+...+.+..+..+.++..+.++......+..... +-.... ..+...+..++...+.+..+....+.
T Consensus 462 ~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~--------~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~ 530 (597)
T 3oja_B 462 RAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKD--------GLARSS---DNLNKVFTHLKERQAFKLRETQARRT 530 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC--------SSSCHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcccc--------ccCCHH---HHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 3444555555555556666666666665555544332 122222 33333444444444444444444444
Q ss_pred HHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 013575 133 QIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDF 203 (440)
Q Consensus 133 ~i~~L~~~L~~~~~~~~~~~~~~~~~lS~e~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~l~~~L~~~~ 203 (440)
.+......+.. -..+...++..++..++...+=.+.......+|.++...+.-.|
T Consensus 531 ~~~~~~~~~~~----------------~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~ 585 (597)
T 3oja_B 531 EADAKQKETED----------------LEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNP 585 (597)
T ss_dssp HHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred hhhhhhcchhh----------------HHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44333222210 11223333333333333333333444455556666666666444
No 33
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=27.31 E-value=4.1e+02 Score=26.16 Aligned_cols=71 Identities=7% Similarity=0.046 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 50 DVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSD 129 (440)
Q Consensus 50 ~~~~~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~ 129 (440)
.-+..+..+.+.++++..+..+..+.+++.+ +++-+.+++.++++...-.+-.+.+.+
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (487)
T 3oja_A 417 KRYEEMYVEQQSVQNNAIRDWDMYQHKETQL----------------------AEENARLKKLNGEADLALASANATLQE 474 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchhhhhhhhhHHHHH----------------------HHHhhhhhhhhhhhhhhhHhcccHHHH
Confidence 3445566666666666666666665555544 445566666677777666666777777
Q ss_pred HHHHHHHHHhHhc
Q 013575 130 VQSQIQKICGEIA 142 (440)
Q Consensus 130 l~~~i~~L~~~L~ 142 (440)
+......+.+.||
T Consensus 475 ~~~~~~~~~~~~~ 487 (487)
T 3oja_A 475 LVVREQNLASQLG 487 (487)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 7777777776665
No 34
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=25.32 E-value=74 Score=30.72 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=34.1
Q ss_pred CHHHHHhHHHHhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 013575 268 PSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIA 322 (440)
Q Consensus 268 ~~ee~~~F~~~~~~i~~s~~~~~~~~~lS~~~l~~~e~El~RL~~lK~~~lk~li 322 (440)
|.++|+.|......+ +..++..+.+++.|+++|+..|.+++
T Consensus 353 pl~eQ~~I~~~l~~i--------------d~~i~~~~~~i~~L~~lk~~LL~~lf 393 (406)
T 1ydx_A 353 SFQLQRKAGKIVFLL--------------DQKLDQYKKELSSLTVIRDTLLKKLF 393 (406)
T ss_dssp CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 568888898876532 67899999999999999999988876
No 35
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=25.19 E-value=1.3e+02 Score=18.61 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 105 QLAAIAPALEQLWKQKEERVKEFSDVQSQ 133 (440)
Q Consensus 105 ~l~~l~~~le~l~~~k~~R~~~~~~l~~~ 133 (440)
+.+.|..++++|-.++.+...++..++.-
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45678889999998888877777666553
No 36
>2q0o_C Probable transcriptional repressor TRAM; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=25.19 E-value=1.6e+02 Score=23.22 Aligned_cols=33 Identities=27% Similarity=0.319 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 013575 169 AQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGM 201 (440)
Q Consensus 169 ~~l~~L~~ek~~R~~~~~~l~~~I~~l~~~L~~ 201 (440)
..++.++.+|..|..+.......+..|.+.||.
T Consensus 65 avl~~~q~eYi~a~~e~~AQq~~lstLid~LGy 97 (107)
T 2q0o_C 65 PVLQTLQDEYVARQKRSEAQQEELSDILDALGF 97 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 367788999999999999999999999999995
No 37
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=24.63 E-value=1e+02 Score=21.06 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 013575 100 GTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEI 141 (440)
Q Consensus 100 ~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L 141 (440)
-||.+|...++.-+.+.+ +..|..++..+..-+..|-.++
T Consensus 5 dPL~EQ~~~I~~~I~qAk--~~~r~DEV~~Le~NLrEL~~ei 44 (51)
T 1yzm_A 5 SPLLQQIHNITSFIRQAK--AAGRMDEVRTLQENLRQLQDEY 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHHHH
Confidence 389999999999998776 5677777777777777765544
No 38
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=24.51 E-value=82 Score=21.22 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 013575 100 GTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIA 142 (440)
Q Consensus 100 ~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~ 142 (440)
-||.+|...++.-+...+ +..|..++..+..-+..|-.++.
T Consensus 4 dPL~EQ~~~I~~~I~qAk--~~rRfdEV~~L~~NL~EL~~E~~ 44 (48)
T 3v1a_A 4 SPLAQQIKNIHSFIHQAK--AAGRMDEVRTLQENLHQLMHEYF 44 (48)
T ss_dssp SHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH--HhcChHHHHHHHHHHHHHHHHHH
Confidence 489999999999998776 67788888888888888866654
No 39
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=23.49 E-value=1.6e+02 Score=29.10 Aligned_cols=81 Identities=17% Similarity=0.250 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 54 RKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQ 133 (440)
Q Consensus 54 ~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~ 133 (440)
..+-+....+..+..++..++++-+.+..++|.-... ..+.-.|..+.+.+..++..+. .++..+.++
T Consensus 30 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~ 97 (425)
T 2dq3_A 30 DKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKRE-----GKDTTEIQNRVKELKEEIDRLE-------EELRKVEEE 97 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSS-----CSCTTTSTTHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CccHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 3455566778888999999999999999999964322 1223355666666666666655 455566666
Q ss_pred HHHHHhHhcCCCC
Q 013575 134 IQKICGEIAGNLS 146 (440)
Q Consensus 134 i~~L~~~L~~~~~ 146 (440)
+..+...|...|+
T Consensus 98 ~~~~~~~ipN~~~ 110 (425)
T 2dq3_A 98 LKNTLLWIPNLPH 110 (425)
T ss_dssp HHHHHHTSCCCCC
T ss_pred HHHHHHhCCCCCC
Confidence 7666666665554
No 40
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=23.41 E-value=1.3e+02 Score=18.34 Aligned_cols=28 Identities=7% Similarity=0.209 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 106 LAAIAPALEQLWKQKEERVKEFSDVQSQ 133 (440)
Q Consensus 106 l~~l~~~le~l~~~k~~R~~~~~~l~~~ 133 (440)
.+.|..++++|-.++.....++..+++-
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4567888999988888877777766653
No 41
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=23.36 E-value=4.3e+02 Score=29.58 Aligned_cols=18 Identities=22% Similarity=0.132 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013575 234 AKTVLALKEDKKQRLHKL 251 (440)
Q Consensus 234 ~~~~~~L~~~K~~r~~~~ 251 (440)
+..+..|++++..-.+++
T Consensus 1022 ~~kv~~L~~e~~~L~qq~ 1039 (1080)
T 2dfs_A 1022 EQLVSELKEQNTLLKTEK 1039 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333433333333333
No 42
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=23.05 E-value=1.4e+02 Score=27.21 Aligned_cols=49 Identities=16% Similarity=0.329 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCC
Q 013575 99 SGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSL 147 (440)
Q Consensus 99 ~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~~ 147 (440)
--.+..|++.++..|+++-.+...=.+.=-..+.+...+|..||..|..
T Consensus 9 ~~~~~~Ql~~F~~~L~~FA~kH~~eI~~dp~fR~~F~~mc~siGVDPla 57 (234)
T 3cuq_A 9 LAQMSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVDPLA 57 (234)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHHcCCCccc
Confidence 4467789999999999998877666666566788999999999999863
No 43
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=22.75 E-value=2.4e+02 Score=28.51 Aligned_cols=79 Identities=9% Similarity=0.186 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 56 VEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQ 135 (440)
Q Consensus 56 vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~ 135 (440)
|-+....+..++.++..++++.+.+..++|...-.. ...-.|..+.+.+..++..+ -.++..+.+++.
T Consensus 35 ~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~-----~~~~~l~~~~~~l~~~i~~l-------e~~~~~~~~~~~ 102 (485)
T 3qne_A 35 IIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAK-----EDAKDLIAEKEKLSNEKKEI-------IEKEAEADKNLR 102 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CCCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 344555666777777788888888887776532211 12223444455554444444 456666777777
Q ss_pred HHHhHhcCCCC
Q 013575 136 KICGEIAGNLS 146 (440)
Q Consensus 136 ~L~~~L~~~~~ 146 (440)
.+...|...|+
T Consensus 103 ~~l~~iPN~~~ 113 (485)
T 3qne_A 103 SKINQVGNIVH 113 (485)
T ss_dssp HHHTTSCCCCC
T ss_pred HHHHhCCCCCC
Confidence 77776665554
No 44
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=22.67 E-value=1.6e+02 Score=23.91 Aligned_cols=47 Identities=15% Similarity=0.334 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHH---hc--hHHHHHHHHHHHHhHHh---HHHHHhhhhhhh
Q 013575 364 LADMDNQIAKAKEEAH---SR--KEILDKVEKWMSACEEE---SWLEDYNRVLRI 410 (440)
Q Consensus 364 L~~~E~Ei~rLk~~~~---~~--k~Il~~vek~~~l~~e~---~~Lee~~r~~~~ 410 (440)
+...+.++..|+.-.. ++ .++=.+|.||.+++.+. .|=--..|+.||
T Consensus 16 i~~l~~~L~~lkqa~k~~~~~~~~eL~~LI~KWr~asq~aaeeLf~~~~~rv~rM 70 (122)
T 3viq_A 16 VRNLQEQLITAETARKVEAKNEDKDLQTLIQKWKNAAQQAAEVLFKPMAERIRLA 70 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555543321 12 56788999999999954 443444455444
No 45
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=22.31 E-value=98 Score=30.92 Aligned_cols=94 Identities=6% Similarity=0.131 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013575 101 TIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSD 180 (440)
Q Consensus 101 sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~~~~~~~~~~~~~lS~e~L~~l~~~l~~L~~ek~~ 180 (440)
+|..+...+..++++|+....+-.+...+.-.-+..+...|....-... +....=.+-.+.|+.++..|+...+.
T Consensus 55 lL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~-----dndn~~~e~S~eLe~ri~yIK~kVd~ 129 (491)
T 1m1j_A 55 IIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQ-----QLDENYGHVSTELRRRIVTLKQRVAT 129 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788899999999988888877777777777777766665432100 00111234455777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 013575 181 RLHKVLEFVSTVHDLCGVL 199 (440)
Q Consensus 181 R~~~~~~l~~~I~~l~~~L 199 (440)
-+..+..|++.|.++...|
T Consensus 130 qi~~IrvLq~~l~~q~skI 148 (491)
T 1m1j_A 130 QVNRIKALQNSIQEQVVEM 148 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7776667776666665444
No 46
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=22.18 E-value=2.9e+02 Score=27.58 Aligned_cols=81 Identities=9% Similarity=0.104 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 54 RKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQ 133 (440)
Q Consensus 54 ~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~ 133 (440)
..|-+....+..+..++..++++-+.+..++|.-... ..+.-.|..+.+.+..+ ....-.++..+.++
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~-----~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~~~ 98 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKK-----GEPVDELLAKSREIVKR-------IGELENEVEELKKK 98 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-----CCCTHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----cccHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 3445566677788888888888888888888853221 11222344444444444 44444667777777
Q ss_pred HHHHHhHhcCCCC
Q 013575 134 IQKICGEIAGNLS 146 (440)
Q Consensus 134 i~~L~~~L~~~~~ 146 (440)
+..+...|...|+
T Consensus 99 ~~~~~~~ipN~~~ 111 (455)
T 2dq0_A 99 IDYYLWRLPNITH 111 (455)
T ss_dssp HHHHHTTSCCCCC
T ss_pred HHHHHHhCCCCCC
Confidence 7777777776654
No 47
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=21.78 E-value=5.7e+02 Score=25.01 Aligned_cols=79 Identities=8% Similarity=0.085 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 54 RKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQ 133 (440)
Q Consensus 54 ~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~ 133 (440)
..|-+....+..+..++..++++-+.+..++|. .. . +....+..++..++.+....-.++..+.++
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~--~~-----~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPK--AP-----P-------EEKEALIARGKALGEEAKRLEEALREKEAR 93 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS--SC-----H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hc-----c-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677888899999999999999999997 11 1 223455556666666666666777778888
Q ss_pred HHHHHhHhcCCCC
Q 013575 134 IQKICGEIAGNLS 146 (440)
Q Consensus 134 i~~L~~~L~~~~~ 146 (440)
+..+.-.|...|+
T Consensus 94 ~~~~~~~ipN~~~ 106 (421)
T 1ses_A 94 LEALLLQVPLPPW 106 (421)
T ss_dssp HHHHHTTCCCCCC
T ss_pred HHHHHHhCCCCCC
Confidence 8777777766554
No 48
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=21.11 E-value=1.9e+02 Score=22.44 Aligned_cols=61 Identities=16% Similarity=0.254 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 013575 46 KECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWK 118 (440)
Q Consensus 46 ~~~~~~~~~~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~ 118 (440)
+++..++.+.-.+...-..++..+|+.+..+++.|-.... ...+|+.+-..|...|+.+.+
T Consensus 32 qELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs------------~aK~LRnKA~~L~~eLe~F~~ 92 (96)
T 1t3j_A 32 QEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQN------------NSKLLRNKAVQLESELENFSK 92 (96)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555666667777777777766633221 222455555555555555543
No 49
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=20.92 E-value=1.4e+02 Score=22.30 Aligned_cols=35 Identities=20% Similarity=0.119 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013575 50 DVYKRKVEQAAKSRAQLLQALSDAKIELASLLSAL 84 (440)
Q Consensus 50 ~~~~~~vee~~~~k~~l~~~i~~~~~el~~L~~eL 84 (440)
.-+..|+.+...+.+.+.++|..++.....|-.++
T Consensus 42 ~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l 76 (78)
T 3iv1_A 42 QKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSAL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678999999999999999999999888886654
No 50
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=20.83 E-value=1.2e+02 Score=23.00 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCcchHHHH
Q 013575 296 ALDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFARAHIEIDPVAAR 346 (440)
Q Consensus 296 S~~~l~~~e~El~RL~~lK~~~lk~li~~~r~el~elWd~~~~~~eer~~f 346 (440)
|.+.+.+++.+|+-....=.+++.++++ ..+.|+.|-++..--..+...|
T Consensus 3 ~~d~l~~vq~ev~evk~iM~~NI~kvL~-RgekL~~L~~kt~~L~~~s~~F 52 (91)
T 3hd7_A 3 HMRRLQQTQAQVDEVVDIMRVNVDKVLE-RDQKLSELDDRADALQAGASQF 52 (91)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999985 7888888877765443333333
No 51
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=20.79 E-value=1.7e+02 Score=18.62 Aligned_cols=29 Identities=28% Similarity=0.298 Sum_probs=20.2
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 223 KSISNDTLARLAKTVLALKEDKKQRLHKL 251 (440)
Q Consensus 223 ~~ls~~~l~~L~~~~~~L~~~K~~r~~~~ 251 (440)
-++|++.+..|..+++.|+..-..-..++
T Consensus 15 egfspeelaaleselqalekklaalkskl 43 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKLAALKSKL 43 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688889999999988866554443333
No 52
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=20.47 E-value=2.1e+02 Score=19.48 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 101 TIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKI 137 (440)
Q Consensus 101 sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L 137 (440)
|+.++...+...++.....+......+...+..+..+
T Consensus 2 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 38 (60)
T 3htk_A 2 PFANTKKTLENQVEELTEKCSLKTDEFLKAKEKINEI 38 (60)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666555555555555555554443
No 53
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=20.17 E-value=1.3e+02 Score=28.62 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=34.5
Q ss_pred HHHHHhHHHHhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 013575 269 SEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAF 323 (440)
Q Consensus 269 ~ee~~~F~~~~~~i~~s~~~~~~~~~lS~~~l~~~e~El~RL~~lK~~~lk~li~ 323 (440)
-+||+.+......+ ++.|+..+..++.|+++|+..|..++.
T Consensus 168 l~EQ~~I~~~l~~l--------------d~~i~~~~~~i~~l~~~k~~l~~~~~~ 208 (425)
T 1yf2_A 168 LEEQKQIAKILTKI--------------DEGIEIIEKSINKLERIKKGLMHKLLT 208 (425)
T ss_dssp HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57888888776532 788999999999999999999999886
Done!