Query 013575
Match_columns 440
No_of_seqs 156 out of 496
Neff 7.8
Searched_HMMs 13730
Date Mon Mar 25 13:09:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013575.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013575hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yf2a2 d.287.1.2 (A:221-425) 49.4 10 0.00075 30.2 5.3 41 268-322 157-197 (205)
2 d1seta1 a.2.7.1 (A:1-110) Sery 44.1 53 0.0039 23.9 10.7 78 55-146 29-106 (110)
3 d1ydxa2 d.287.1.2 (A:194-374) 41.3 19 0.0014 28.3 5.7 41 268-322 137-177 (181)
4 d1ydxa1 d.287.1.2 (A:1-193) Bi 40.7 16 0.0011 29.1 5.1 41 269-323 143-183 (193)
5 d1yf2a1 d.287.1.2 (A:1-220) Bi 36.4 28 0.0021 28.2 6.2 42 268-323 167-208 (220)
6 d1vcsa1 a.47.2.1 (A:8-96) Vesi 23.8 45 0.0033 23.6 4.4 21 99-119 62-82 (89)
7 d1zkea1 a.30.6.1 (A:1-79) Hypo 23.0 1E+02 0.0076 20.7 6.5 53 321-380 11-68 (79)
8 d1u5ta1 a.4.5.54 (A:20-164) Va 20.2 21 0.0015 28.1 2.0 45 102-146 13-57 (145)
9 d1fxkc_ a.2.5.1 (C:) Prefoldin 19.5 1.6E+02 0.012 21.5 8.9 37 225-261 92-128 (133)
10 d1f46a_ d.129.4.1 (A:) Cell-di 18.9 1.1E+02 0.0077 23.3 6.1 46 125-176 91-136 (139)
No 1
>d1yf2a2 d.287.1.2 (A:221-425) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=49.35 E-value=10 Score=30.24 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=33.0
Q ss_pred CHHHHHhHHHHhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 013575 268 PSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIA 322 (440)
Q Consensus 268 ~~ee~~~F~~~~~~i~~s~~~~~~~~~lS~~~l~~~e~El~RL~~lK~~~lk~li 322 (440)
|.++|+.|......+ +..|+.++..++.|+++|+..|+.++
T Consensus 157 ~~~eQ~~I~~~l~~i--------------d~~i~~~~~~~~~l~~~k~~Ll~~l~ 197 (205)
T d1yf2a2 157 PLEEQKQIAKILSSV--------------DKSIELKKQKKEKLQRMKKKIMELLL 197 (205)
T ss_dssp CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457788887776533 67889999999999999999888876
No 2
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=44.10 E-value=53 Score=23.85 Aligned_cols=78 Identities=6% Similarity=0.067 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 55 KVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQI 134 (440)
Q Consensus 55 ~vee~~~~k~~l~~~i~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i 134 (440)
.|-+....+..+..++..++++-+.+...+|-... . .-..+..++..++.+....-.++..+.+++
T Consensus 29 ~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~-------~-------~~~~l~~~~k~lk~~i~~le~~~~~~~~~l 94 (110)
T d1seta1 29 ALLALDREVQELKKRLQEVQTERNQVAKRVPKAPP-------E-------EKEALIARGKALGEEAKRLEEALREKEARL 94 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCH-------H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------c-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677888899999999999999999983221 1 122344444555555555556677777777
Q ss_pred HHHHhHhcCCCC
Q 013575 135 QKICGEIAGNLS 146 (440)
Q Consensus 135 ~~L~~~L~~~~~ 146 (440)
..++..|.-.|+
T Consensus 95 ~~~ll~iPNi~~ 106 (110)
T d1seta1 95 EALLLQVPLPPW 106 (110)
T ss_dssp HHHHTTCCCCCC
T ss_pred HHHHHcCCCCCC
Confidence 777766665554
No 3
>d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=41.29 E-value=19 Score=28.29 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=34.2
Q ss_pred CHHHHHhHHHHhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 013575 268 PSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIA 322 (440)
Q Consensus 268 ~~ee~~~F~~~~~~i~~s~~~~~~~~~lS~~~l~~~e~El~RL~~lK~~~lk~li 322 (440)
|-++|+.|.+....+ ++.|+..+.+++.|+++|+..|+++.
T Consensus 137 ~l~eQ~~I~~~l~~~--------------d~~i~~~~~~i~~l~~lk~~Ll~~lF 177 (181)
T d1ydxa2 137 SFQLQRKAGKIVFLL--------------DQKLDQYKKELSSLTVIRDTLLKKLF 177 (181)
T ss_dssp CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 358888898887543 78999999999999999999888764
No 4
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=40.74 E-value=16 Score=29.09 Aligned_cols=41 Identities=10% Similarity=0.081 Sum_probs=34.9
Q ss_pred HHHHHhHHHHhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 013575 269 SEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAF 323 (440)
Q Consensus 269 ~ee~~~F~~~~~~i~~s~~~~~~~~~lS~~~l~~~e~El~RL~~lK~~~lk~li~ 323 (440)
.++|+.+......+ +..|+.++.+++.|+++|...|++++.
T Consensus 143 ~~eQ~~I~~~l~~l--------------d~~i~~~~~~i~~l~~~~~~ll~~lft 183 (193)
T d1ydxa1 143 KNEQHAIANTLSVF--------------DERLENLASLIEINRKLRDEYAHKLFS 183 (193)
T ss_dssp HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 57788888776533 788999999999999999999999984
No 5
>d1yf2a1 d.287.1.2 (A:1-220) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=36.36 E-value=28 Score=28.15 Aligned_cols=42 Identities=24% Similarity=0.384 Sum_probs=34.8
Q ss_pred CHHHHHhHHHHhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 013575 268 PSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAF 323 (440)
Q Consensus 268 ~~ee~~~F~~~~~~i~~s~~~~~~~~~lS~~~l~~~e~El~RL~~lK~~~lk~li~ 323 (440)
|.++|+.|.+....+ ++.+...+..++.|+++|...|+.++.
T Consensus 167 p~~eQ~~I~~~l~~i--------------~~~i~~~~~~i~~L~~~r~~ll~~l~t 208 (220)
T d1yf2a1 167 PLEEQKQIAKILTKI--------------DEGIEIIEKSINKLERIKKGLMHKLLT 208 (220)
T ss_dssp CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 567888888877533 678899999999999999999998875
No 6
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.78 E-value=45 Score=23.64 Aligned_cols=21 Identities=10% Similarity=0.221 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 013575 99 SGTIKEQLAAIAPALEQLWKQ 119 (440)
Q Consensus 99 ~~sL~~~l~~l~~~le~l~~~ 119 (440)
-.++..++..|+..+..|+++
T Consensus 62 R~~~~~klr~Yk~dl~~lk~e 82 (89)
T d1vcsa1 62 RGMYSNRMRSYKQEMGKLETD 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888888754
No 7
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=23.03 E-value=1e+02 Score=20.73 Aligned_cols=53 Identities=15% Similarity=0.265 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHcCCCcchHHHHHHhhhhhcCCC-----CChHHHHHHHHHHHHHHHHHHHh
Q 013575 321 IAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGN-----VEPAELLADMDNQIAKAKEEAHS 380 (440)
Q Consensus 321 li~~~r~el~elWd~~~~~~eer~~f~~~~~~~~s~~-----~~~eelL~~~E~Ei~rLk~~~~~ 380 (440)
=|+++|.+|+=+-+...+|-.. +. .+..|. -.+...|++++.||.+||+...+
T Consensus 11 ~IE~~q~eI~~lL~~AkiS~vD------yI-mIKRGS~DmPe~l~~~~l~qid~ev~kLK~~Ida 68 (79)
T d1zkea1 11 DIEDSQNEIEMLLKLANLSLGD------FI-EIKRGSMDMPKGVNEAFFTQLSEEVERLKELINA 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHH------HH-HHHTTSSCCCTTCCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhH------hh-eeecCcccCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 3567999999999999998332 21 233332 25678999999999999988654
No 8
>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.24 E-value=21 Score=28.06 Aligned_cols=45 Identities=16% Similarity=0.334 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCC
Q 013575 102 IKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLS 146 (440)
Q Consensus 102 L~~~l~~l~~~le~l~~~k~~R~~~~~~l~~~i~~L~~~L~~~~~ 146 (440)
+..|++.++..|+++-.....=.+.=-..+.+..++|+.+|..|.
T Consensus 13 l~~QL~vF~~~L~~FA~kH~~eI~~np~FR~~F~~MC~~iGVDPL 57 (145)
T d1u5ta1 13 LRDQLMVFQERLVEFAKKHNSELQASPEFRSKFMHMCSSIGIDPL 57 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTTTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHHhCCChh
Confidence 344455555555555444444344444577888999999999996
No 9
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=19.46 E-value=1.6e+02 Score=21.55 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013575 225 ISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDL 261 (440)
Q Consensus 225 ls~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~~L 261 (440)
+-+..++.|...++.+.........++..+...+.++
T Consensus 92 ~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l 128 (133)
T d1fxkc_ 92 SIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666555555555555443
No 10
>d1f46a_ d.129.4.1 (A:) Cell-division protein ZipA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=18.95 E-value=1.1e+02 Score=23.29 Aligned_cols=46 Identities=26% Similarity=0.362 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 013575 125 KEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQK 176 (440)
Q Consensus 125 ~~~~~l~~~i~~L~~~L~~~~~~~~~~~~~~~~~lS~e~L~~l~~~l~~L~~ 176 (440)
.-|..+.+..+.+++.|++.-... ....+|...++.++.++.+++.
T Consensus 91 ~aFd~Ml~~a~~la~~l~g~l~D~------~r~~lt~q~i~~~R~~i~e~e~ 136 (139)
T d1f46a_ 91 QLFKLMLQSAQHIADEVGGVVLDD------QRRMMTPQKLREYQDIIREVKD 136 (139)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEECT------TSCBCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEECC------CCCCCCHHHHHHHHHHHHHHHH
Confidence 457778888889999999976521 1457899999999999988874
Done!