Query 013576
Match_columns 440
No_of_seqs 262 out of 1374
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 05:15:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013576.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013576hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4347 GTPase-activating prot 100.0 1.5E-37 3.2E-42 328.0 16.6 275 3-292 299-594 (671)
2 KOG2058 Ypt/Rab GTPase activat 99.9 5E-27 1.1E-31 243.4 10.8 153 7-163 260-412 (436)
3 KOG2222 Uncharacterized conser 99.8 4.2E-20 9E-25 190.2 10.2 165 4-169 270-439 (848)
4 PF00566 RabGAP-TBC: Rab-GTPas 99.8 7.8E-19 1.7E-23 163.5 13.5 109 6-115 106-214 (214)
5 COG5210 GTPase-activating prot 99.8 9.1E-19 2E-23 186.3 14.7 124 7-131 319-443 (496)
6 KOG1092 Ypt/Rab-specific GTPas 99.8 5E-18 1.1E-22 173.4 13.0 139 6-146 328-471 (484)
7 KOG2223 Uncharacterized conser 99.7 7.9E-18 1.7E-22 172.2 12.6 159 7-176 416-575 (586)
8 smart00164 TBC Domain in Tre-2 99.7 6.3E-17 1.4E-21 150.4 11.0 89 7-95 109-198 (199)
9 KOG4567 GTPase-activating prot 99.7 4.2E-16 9.2E-21 154.6 12.6 134 7-144 218-356 (370)
10 KOG1093 Predicted protein kina 99.6 8.4E-15 1.8E-19 154.4 11.5 141 9-154 454-595 (725)
11 KOG4436 Predicted GTPase activ 99.5 6.7E-14 1.5E-18 151.7 14.1 144 2-146 678-824 (948)
12 KOG1102 Rab6 GTPase activator 99.4 2E-13 4.3E-18 142.1 7.2 133 5-139 244-376 (397)
13 KOG3636 Uncharacterized conser 99.2 3.4E-11 7.3E-16 124.4 11.3 134 9-146 132-269 (669)
14 KOG2595 Predicted GTPase activ 99.1 6.6E-10 1.4E-14 111.9 11.6 147 7-156 160-308 (395)
15 KOG1091 Ypt/Rab-specific GTPas 98.9 5.8E-09 1.3E-13 110.7 10.8 120 24-145 238-359 (625)
16 KOG2224 Uncharacterized conser 98.7 7.4E-08 1.6E-12 99.7 10.2 119 9-130 588-712 (781)
17 KOG2221 PDZ-domain interacting 98.5 3E-08 6.4E-13 95.1 1.8 66 5-70 202-267 (267)
18 KOG2197 Ypt/Rab-specific GTPas 98.5 2.4E-07 5.2E-12 99.1 8.1 122 8-130 301-424 (488)
19 KOG4436 Predicted GTPase activ 98.4 3.9E-07 8.4E-12 100.1 5.9 141 4-145 293-437 (948)
20 KOG2801 Probable Rab-GAPs [Int 97.9 3.1E-05 6.7E-10 77.6 8.4 138 24-165 167-309 (559)
21 PF14961 BROMI: Broad-minded p 97.4 0.0013 2.8E-08 76.0 11.9 124 36-172 1166-1289(1296)
22 PF00036 EF-hand_1: EF hand; 92.9 0.043 9.4E-07 36.6 0.8 27 256-282 3-29 (29)
23 KOG0044 Ca2+ sensor (EF-Hand s 91.9 0.095 2.1E-06 50.1 2.1 60 223-292 44-103 (193)
24 PF07111 HCR: Alpha helical co 75.5 1.3E+02 0.0027 34.5 16.3 76 254-330 476-551 (739)
25 PF13405 EF-hand_6: EF-hand do 74.7 1.5 3.3E-05 29.0 0.9 24 257-280 4-27 (31)
26 PF15070 GOLGA2L5: Putative go 72.5 1.5E+02 0.0032 33.5 16.2 97 245-343 25-138 (617)
27 PF05278 PEARLI-4: Arabidopsis 71.5 52 0.0011 33.3 11.2 74 250-329 167-243 (269)
28 PF04728 LPP: Lipoprotein leuc 71.5 16 0.00034 28.5 5.9 42 289-349 13-54 (56)
29 PF13202 EF-hand_5: EF hand; P 68.7 2.7 5.9E-05 26.9 1.1 21 257-277 3-23 (25)
30 PF05911 DUF869: Plant protein 67.0 1.5E+02 0.0033 34.3 15.1 110 250-359 25-165 (769)
31 PF14931 IFT20: Intraflagellar 65.7 99 0.0022 27.5 12.0 77 252-332 23-115 (120)
32 PRK11637 AmiB activator; Provi 65.5 1.2E+02 0.0025 32.2 13.2 35 291-325 45-79 (428)
33 PF10815 ComZ: ComZ; InterPro 64.1 9.2 0.0002 29.5 3.3 41 39-79 5-45 (56)
34 PF13499 EF-hand_7: EF-hand do 60.3 9.4 0.0002 28.9 2.9 30 257-286 4-33 (66)
35 PRK10884 SH3 domain-containing 59.4 1.1E+02 0.0023 29.8 10.5 28 354-381 137-164 (206)
36 COG4238 Murein lipoprotein [Ce 58.8 32 0.0007 28.3 5.7 43 289-350 35-77 (78)
37 PF12325 TMF_TATA_bd: TATA ele 58.7 98 0.0021 27.6 9.4 58 252-309 47-112 (120)
38 PRK03947 prefoldin subunit alp 58.6 28 0.00061 31.0 6.1 49 282-330 90-138 (140)
39 PF09726 Macoilin: Transmembra 56.8 1.8E+02 0.0039 33.3 13.3 68 289-366 541-611 (697)
40 cd05024 S-100A10 S-100A10: A s 56.6 7.2 0.00016 33.1 1.8 29 256-284 51-79 (91)
41 PF13499 EF-hand_7: EF-hand do 53.9 12 0.00026 28.3 2.5 50 223-279 17-66 (66)
42 smart00054 EFh EF-hand, calciu 53.4 6.6 0.00014 23.2 0.8 25 257-281 4-28 (29)
43 PF08317 Spc7: Spc7 kinetochor 51.6 2.9E+02 0.0062 28.3 14.3 90 254-346 189-280 (325)
44 PF15003 HAUS2: HAUS augmin-li 51.2 2.8E+02 0.0062 28.2 14.1 110 268-389 61-197 (277)
45 COG3132 Uncharacterized protei 50.5 15 0.00033 35.0 3.0 30 278-311 181-210 (215)
46 PF06698 DUF1192: Protein of u 49.1 40 0.00088 26.5 4.7 30 289-318 24-53 (59)
47 PRK10884 SH3 domain-containing 49.0 2E+02 0.0042 27.9 10.5 9 234-242 74-82 (206)
48 PF13805 Pil1: Eisosome compon 47.6 3.2E+02 0.007 27.8 12.9 96 262-377 123-220 (271)
49 PF12777 MT: Microtubule-bindi 47.1 2.2E+02 0.0049 29.3 11.3 34 290-323 12-45 (344)
50 cd05030 calgranulins Calgranul 47.0 13 0.00028 30.7 1.8 58 219-284 23-82 (88)
51 PF03148 Tektin: Tektin family 46.8 2.2E+02 0.0047 30.0 11.3 81 254-334 263-365 (384)
52 PF04849 HAP1_N: HAP1 N-termin 45.8 1.7E+02 0.0037 30.2 9.9 69 247-317 232-300 (306)
53 KOG2264 Exostosin EXT1L [Signa 45.7 92 0.002 34.9 8.3 46 256-313 82-127 (907)
54 cd05023 S-100A11 S-100A11: S-1 45.6 14 0.0003 30.7 1.9 54 223-285 28-84 (89)
55 cd05022 S-100A13 S-100A13: S-1 45.5 15 0.00031 30.8 1.9 54 223-286 26-80 (89)
56 PF00435 Spectrin: Spectrin re 44.7 1.5E+02 0.0033 23.2 9.7 71 242-314 31-101 (105)
57 PF13833 EF-hand_8: EF-hand do 44.4 12 0.00025 27.4 1.1 25 256-280 28-52 (54)
58 PF07278 DUF1441: Protein of u 44.3 1.1E+02 0.0023 28.5 7.5 41 248-288 67-108 (152)
59 smart00150 SPEC Spectrin repea 43.4 90 0.0019 24.5 6.3 52 263-315 48-99 (101)
60 PF07106 TBPIP: Tat binding pr 42.0 1.5E+02 0.0033 27.1 8.4 57 257-313 80-136 (169)
61 COG1196 Smc Chromosome segrega 41.0 7.3E+02 0.016 30.0 19.9 92 246-337 671-774 (1163)
62 PRK04863 mukB cell division pr 41.0 8.4E+02 0.018 30.7 17.1 92 289-381 379-474 (1486)
63 PF11616 EZH2_WD-Binding: WD r 40.5 42 0.00091 22.9 3.1 21 286-306 6-26 (30)
64 KOG0612 Rho-associated, coiled 39.7 6.6E+02 0.014 30.9 14.4 72 284-362 669-741 (1317)
65 KOG4673 Transcription factor T 39.4 3.6E+02 0.0077 31.1 11.7 80 247-327 521-613 (961)
66 PF11932 DUF3450: Protein of u 38.7 3.9E+02 0.0084 26.2 11.3 72 256-329 42-113 (251)
67 KOG4571 Activating transcripti 38.5 78 0.0017 32.4 6.1 51 263-313 233-289 (294)
68 PHA02562 46 endonuclease subun 37.3 5.6E+02 0.012 27.6 16.4 12 410-421 475-487 (562)
69 TIGR01837 PHA_granule_1 poly(h 36.5 2.1E+02 0.0045 25.2 7.9 19 289-307 99-117 (118)
70 PRK11239 hypothetical protein; 36.0 51 0.0011 32.3 4.2 27 289-315 186-212 (215)
71 KOG4010 Coiled-coil protein TP 35.4 65 0.0014 31.0 4.7 36 279-318 41-76 (208)
72 cd00213 S-100 S-100: S-100 dom 35.0 1E+02 0.0022 24.7 5.3 35 246-281 2-38 (88)
73 PF14197 Cep57_CLD_2: Centroso 34.5 2.4E+02 0.0053 22.6 8.7 58 247-306 3-67 (69)
74 KOG0031 Myosin regulatory ligh 34.3 28 0.0006 32.7 2.1 39 257-295 36-74 (171)
75 TIGR02894 DNA_bind_RsfA transc 33.7 1.1E+02 0.0024 28.7 5.9 37 289-325 114-150 (161)
76 KOG0027 Calmodulin and related 33.2 36 0.00077 30.5 2.6 60 223-288 61-120 (151)
77 PF12763 EF-hand_4: Cytoskelet 32.7 32 0.00069 29.7 2.1 55 227-284 10-74 (104)
78 PRK11637 AmiB activator; Provi 32.5 6.2E+02 0.014 26.7 14.8 24 289-312 180-203 (428)
79 TIGR03752 conj_TIGR03752 integ 31.8 4.1E+02 0.0088 29.2 10.5 33 245-277 62-94 (472)
80 cd05027 S-100B S-100B: S-100B 31.4 74 0.0016 26.3 4.0 34 247-281 3-38 (88)
81 PTZ00183 centrin; Provisional 30.9 65 0.0014 28.0 3.9 34 249-283 14-47 (158)
82 cd00052 EH Eps15 homology doma 30.6 33 0.00073 25.4 1.7 29 256-284 36-64 (67)
83 PLN02964 phosphatidylserine de 30.2 47 0.001 37.6 3.4 65 228-295 144-221 (644)
84 PF09726 Macoilin: Transmembra 29.9 9.1E+02 0.02 27.8 16.7 59 321-379 552-610 (697)
85 PF08647 BRE1: BRE1 E3 ubiquit 29.4 3.5E+02 0.0075 22.8 11.9 82 291-373 1-86 (96)
86 KOG2391 Vacuolar sorting prote 29.3 2.4E+02 0.0052 29.7 8.0 29 179-207 115-147 (365)
87 PF07888 CALCOCO1: Calcium bin 29.2 8.5E+02 0.018 27.3 21.2 171 259-430 321-518 (546)
88 PF07544 Med9: RNA polymerase 29.0 3.3E+02 0.0071 22.4 7.4 26 289-314 55-80 (83)
89 PF15372 DUF4600: Domain of un 28.9 2.6E+02 0.0055 25.4 7.2 67 247-331 20-86 (129)
90 KOG0982 Centrosomal protein Nu 28.9 4.9E+02 0.011 28.3 10.3 65 252-316 253-333 (502)
91 cd05029 S-100A6 S-100A6: S-100 28.9 40 0.00086 27.9 2.0 54 223-284 29-82 (88)
92 KOG2072 Translation initiation 28.7 1E+03 0.023 28.1 13.5 33 283-315 762-794 (988)
93 KOG0034 Ca2+/calmodulin-depend 28.5 45 0.00097 31.8 2.5 54 223-280 121-174 (187)
94 KOG0996 Structural maintenance 28.3 1.2E+03 0.026 28.7 14.9 60 245-305 861-926 (1293)
95 PRK15396 murein lipoprotein; P 28.0 3.5E+02 0.0075 22.4 7.4 35 279-313 18-52 (78)
96 PF12709 Kinetocho_Slk19: Cent 27.9 1.6E+02 0.0034 25.0 5.3 73 245-323 11-86 (87)
97 TIGR01005 eps_transp_fam exopo 27.8 9.4E+02 0.02 27.3 17.0 21 363-383 376-396 (754)
98 PF05529 Bap31: B-cell recepto 27.6 4.7E+02 0.01 24.4 9.3 21 291-311 152-172 (192)
99 TIGR03185 DNA_S_dndD DNA sulfu 27.4 9.2E+02 0.02 27.1 15.9 72 256-327 391-462 (650)
100 cd05026 S-100Z S-100Z: S-100Z 27.1 41 0.00089 27.9 1.8 54 222-282 28-82 (93)
101 cd05027 S-100B S-100B: S-100B 26.6 43 0.00093 27.7 1.8 28 256-283 54-81 (88)
102 KOG0996 Structural maintenance 26.6 1.3E+03 0.028 28.5 15.0 96 289-384 415-514 (1293)
103 KOG1265 Phospholipase C [Lipid 26.5 1.2E+03 0.026 28.1 16.8 106 273-379 1062-1175(1189)
104 PF05701 WEMBL: Weak chloropla 26.5 8.9E+02 0.019 26.6 18.3 88 292-383 336-427 (522)
105 PF02181 FH2: Formin Homology 26.3 2.1E+02 0.0045 29.4 7.2 36 351-386 311-346 (370)
106 PF04201 TPD52: Tumour protein 25.2 1.1E+02 0.0024 28.7 4.4 31 288-318 31-61 (162)
107 cd00051 EFh EF-hand, calcium b 25.2 55 0.0012 22.7 2.0 27 257-283 4-30 (63)
108 PF05266 DUF724: Protein of un 24.9 6.2E+02 0.013 24.2 12.2 55 254-308 91-146 (190)
109 cd00052 EH Eps15 homology doma 24.8 40 0.00087 25.0 1.2 26 257-282 3-28 (67)
110 TIGR02169 SMC_prok_A chromosom 24.7 1.2E+03 0.026 27.4 19.8 21 352-372 472-492 (1164)
111 cd05025 S-100A1 S-100A1: S-100 24.6 53 0.0011 26.9 2.0 54 223-283 28-82 (92)
112 KOG0971 Microtubule-associated 24.5 1.1E+03 0.024 28.3 12.7 100 262-367 436-539 (1243)
113 cd00213 S-100 S-100: S-100 dom 23.8 55 0.0012 26.3 1.9 29 256-284 54-82 (88)
114 TIGR02169 SMC_prok_A chromosom 23.7 1.2E+03 0.027 27.3 19.5 6 90-95 110-115 (1164)
115 KOG0034 Ca2+/calmodulin-depend 23.2 81 0.0018 30.1 3.2 56 223-288 84-139 (187)
116 PRK12309 transaldolase/EF-hand 22.5 84 0.0018 33.4 3.4 53 228-284 335-388 (391)
117 PF05130 FlgN: FlgN protein; 22.5 4.8E+02 0.01 22.0 12.5 107 254-390 16-122 (143)
118 cd00632 Prefoldin_beta Prefold 22.1 4.8E+02 0.01 22.0 9.0 41 278-318 55-95 (105)
119 KOG3990 Uncharacterized conser 22.0 4.1E+02 0.0089 27.0 7.8 66 295-370 227-295 (305)
120 PHA01750 hypothetical protein 21.9 2.2E+02 0.0049 23.0 4.8 35 276-310 33-73 (75)
121 PF07047 OPA3: Optic atrophy 3 21.7 2.1E+02 0.0046 25.6 5.4 26 289-314 108-133 (134)
122 KOG4643 Uncharacterized coiled 21.4 1.5E+03 0.033 27.5 17.0 59 257-319 383-441 (1195)
123 PF08826 DMPK_coil: DMPK coile 21.4 4.1E+02 0.009 20.9 6.8 19 288-306 41-59 (61)
124 PF07989 Microtub_assoc: Micro 21.4 4.5E+02 0.0098 21.4 7.5 54 257-310 8-67 (75)
125 PF00261 Tropomyosin: Tropomyo 20.8 7.8E+02 0.017 23.9 14.5 129 247-382 6-139 (237)
126 PF05929 Phage_GPO: Phage caps 20.5 4.8E+02 0.01 26.6 8.2 24 287-310 229-252 (276)
127 PF05266 DUF724: Protein of un 20.4 7.6E+02 0.016 23.6 13.8 112 272-387 71-184 (190)
128 PF04380 BMFP: Membrane fusoge 20.4 3.3E+02 0.0072 22.2 5.8 67 229-306 11-77 (79)
No 1
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=100.00 E-value=1.5e-37 Score=328.05 Aligned_cols=275 Identities=27% Similarity=0.426 Sum_probs=246.6
Q ss_pred ccchHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHHHHHHHChHHHHHHHhcCCCchhhhHhHHHHHhcccCChhh
Q 013576 3 YITLLLDTVRTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWES 82 (440)
Q Consensus 3 ~a~lLEdAFWlLv~Lme~~Lp~yy~~~~~gl~~d~~vfe~LLk~~lP~L~~HL~~lgI~~~~f~~~WFLtLFs~~LPle~ 82 (440)
..+-+|+|||+++.+|+.++|+||+..+.|...|+.||+.+++.++|.||.|+..+| ...+++++||+|+|...+|++.
T Consensus 299 l~~~EEeafwll~~lce~~ip~yys~~vvGtliDQ~vfe~lve~~lP~l~~~~~~l~-~l~~Vsl~WFlslFls~m~le~ 377 (671)
T KOG4347|consen 299 LFCKEEEAFWLLSKLCEIYIPDYYSKTVVGTLIDQSVFEELVEDTLPVLGEHLAVLG-QLSTVSLSWFLSLFLSLMPLEY 377 (671)
T ss_pred hhhccchHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhc-ccceEeeHHHHHHHHHHcchHH
Confidence 445677999999999999999999999999999999999999999999999999999 6999999999999999999999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHcHHHhhCCCCHHHHHHHHHcccCCCC---------------ChHHHHHHHhhc
Q 013576 83 VLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTF---------------DSSQLVFTACMG 147 (440)
Q Consensus 83 vlRIWD~fL~EG~kv~LfrVALAILk~~~d~LL~~kD~~eil~lLq~l~~~~~---------------D~deLI~~A~~~ 147 (440)
.+||.||||++|.++ +|.|||||++.+.+.|++++|.++++.+|+++.++.. .+.+||.+||..
T Consensus 378 a~~ilD~FF~eG~rv-lFqiaLail~~N~~~il~~~dDge~~~vl~~y~~~i~~~~~~~~~~~~~~~~~i~~Ll~~ay~k 456 (671)
T KOG4347|consen 378 AVRILDCFFYEGPRV-LFQIALAILKQNAERILSATDDGEAMMVLGNYFDSIYNGDYPDESDHASDSIEIQDLLATAYEK 456 (671)
T ss_pred HHHHHhhhhhcccHH-HHHHHHHHHHhhHHHhcccCCchHHHHHHHHHHHhccCCCCCccccchhhhhHHHHHHHHHHHH
Confidence 999999999999998 9999999999999999999999999999988665432 256899999999
Q ss_pred ccCCCHHHHHHHHHHhhHHHHHHHHHHHhcCCcc------cCCcchHhhhhhhccChhhhhhhccCCCCCCCCCCCCCcC
Q 013576 148 YLTVTEARLQELREKHRPAVLLVVEERSKGGRVW------KDPNGLATKLYSFKHDPELLIEENKGTEGSDDALADGDLS 221 (440)
Q Consensus 148 ~~~Is~~~Ie~LR~k~r~~V~q~~eer~kk~~~~------k~~~~l~~~Ly~~~~d~~~l~~~~~~~e~~~~~~~~~e~~ 221 (440)
|+.||.+.|+.+|.|||..|++++|.+.|+.... .-.+..++.||+.|++..+. .....-+++|+.+..+.+
T Consensus 457 Fg~it~e~ie~~R~K~r~~v~q~le~~~krt~lrs~~~~~~lt~~dL~~lYd~f~~e~~~--~~~~~~~~~p~~~~~eqy 534 (671)
T KOG4347|consen 457 FGDITDELIEHLRKKHRLGVLQSLEDFTKRTILRSVVQTTSLTNTDLENLYDLFKEEHLT--NSIGLGRSDPDFEAFEQY 534 (671)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhcccCccCHHHHHHHHHHHHHHHhc--cCcccCCCCCCchHHHHH
Confidence 9999999999999999999999999998875332 24566788999988888333 222223777888888999
Q ss_pred ccCccCChhHhhccCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhcHHHHHHHHHHHhhhhHHHHHH
Q 013576 222 YKEPAANLDEMLSGLSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLS 292 (440)
Q Consensus 222 r~d~~~~f~~~~~~L~~~~~~~~~~~~~~~~~l~~~l~rLld~~~~~~l~~~el~~~l~em~k~d~~~~L~ 292 (440)
+|.. +|..+|..|.||. .+ ..+..++||++|.+.+|+|+|++|+++|++++.+|+.++|+
T Consensus 535 -i~~~-~f~~~f~~l~pw~--~s-------~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~ 594 (671)
T KOG4347|consen 535 -IDYA-QFLEVFRELLPWA--VS-------LIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLK 594 (671)
T ss_pred -HHHh-hHHHHhhccCchh--HH-------HHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHH
Confidence 9997 9999999999999 22 34889999999999999999999999999999999998886
No 2
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5e-27 Score=243.41 Aligned_cols=153 Identities=36% Similarity=0.626 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHHHHHHHChHHHHHHHhcCCCchhhhHhHHHHHhcccCChhhHHHH
Q 013576 7 LLDTVRTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRV 86 (440)
Q Consensus 7 LEdAFWlLv~Lme~~Lp~yy~~~~~gl~~d~~vfe~LLk~~lP~L~~HL~~lgI~~~~f~~~WFLtLFs~~LPle~vlRI 86 (440)
||+|||+|+.|+++|+|+||++++.|.++|+.||+.+++.++|+|+.||..+|++..+++.+||+|+|++++|.++++||
T Consensus 260 EE~AFW~Lv~iie~~lp~Yyt~nL~g~qvDQ~VL~~llre~lPkl~~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrI 339 (436)
T KOG2058|consen 260 EEDAFWMLVALIENYLPRYYTPNLIGSQVDQKVLRELLREKLPKLSLHLEGNGVDASLETLPWFLTLFVDILPSETVLRI 339 (436)
T ss_pred hHHHHHHHHHHHHHhchhhcCchhhhhhccHHHHHHHHHHHCHHHHHhhhhcCCCeeeeehhhhHHHhcccccHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHcHHHhhCCCCHHHHHHHHHcccCCCCChHHHHHHHhhcccCCCHHHHHHHHHHh
Q 013576 87 WDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQELREKH 163 (440)
Q Consensus 87 WD~fL~EG~kv~LfrVALAILk~~~d~LL~~kD~~eil~lLq~l~~~~~D~deLI~~A~~~~~~Is~~~Ie~LR~k~ 163 (440)
||++|++|.++ +|++|+|+++.++++|+.+++..+++.+++.+....+|.+ ..++......+...+...|..+
T Consensus 340 wD~~f~eGskv-lfr~Alai~k~~ee~il~~~~~~~i~~~~~~~~~~~~~~~---~~~f~~~~~~~~~~~~~~~~~~ 412 (436)
T KOG2058|consen 340 WDCLFYEGSKV-LFRVALAILKKHEEEILKEDSSKEILRVLPDLTKRSIDPD---QDAFGLANKLTISKIPIQQVLQ 412 (436)
T ss_pred HHHHHhcccHH-HHHHHHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHhhhhh---hhhhhcccccccccCchhhhhH
Confidence 99999999998 9999999999999999999999999999999888877777 6666655556666666555554
No 3
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=99.81 E-value=4.2e-20 Score=190.19 Aligned_cols=165 Identities=21% Similarity=0.450 Sum_probs=152.9
Q ss_pred cchHHHHHHHHHHHHHhhhh-ccCCCChHHHHHHHHHHHHHHHHHChHHHHHHHhcCCCchhhhHhHHHHHhcccCChhh
Q 013576 4 ITLLLDTVRTFVGIIDDYFD-GYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWES 82 (440)
Q Consensus 4 a~lLEdAFWlLv~Lme~~Lp-~yy~~~~~gl~~d~~vfe~LLk~~lP~L~~HL~~lgI~~~~f~~~WFLtLFs~~LPle~ 82 (440)
.+-+|.|||++..++++++| .||+..+-|++.|..|...|++-++|+|-+.|.+..|..++++..||+|||.+++....
T Consensus 270 f~~ee~afwmmaaiiedilp~nfysqtllgiqaderv~~~li~~~l~~ldeal~~~dielslitl~w~ltlf~nv~~~ki 349 (848)
T KOG2222|consen 270 FCEEENAFWMMAAIIEDILPANFYSQTLLGIQADERVMHHLIACHLPDLDEALEDHDIELSLITLHWFLTLFANVFHMKI 349 (848)
T ss_pred HhcchhHHHHHHHHHHHhcCchhhhhhHhccchhHHHHHHHHHhccCchhHHHHhccceeeehHHHHHHHHHHHHHHHHH
Confidence 44566999999999999985 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHcHHHhhCC----CCHHHHHHHHHcccCCCCChHHHHHHHhhcccCCCHHHHHH
Q 013576 83 VLRVWDVLLYEGNRVMLFRTALALMELYGPALVTT----KDAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQE 158 (440)
Q Consensus 83 vlRIWD~fL~EG~kv~LfrVALAILk~~~d~LL~~----kD~~eil~lLq~l~~~~~D~deLI~~A~~~~~~Is~~~Ie~ 158 (440)
.+||||.||++|.-. +|++.++||+..+.+|... .+..+|++.|+++|....|++.++..+-.--..|++-.|.+
T Consensus 350 llriwd~~fy~g~i~-ifql~i~ilkmkeqdi~~iaettensa~if~als~ip~~vtdve~l~~~~~~~~~sis~~li~~ 428 (848)
T KOG2222|consen 350 LLRIWDFFFYEGGIN-IFQLIIGILKMKEQDIKEIAETTENSADIFNALSDIPAEVTDVEKLFEQAGEFEFSISDHLIAE 428 (848)
T ss_pred HHHHHHhheecCcch-hHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHhCCchhhhHHHHHHHHhhcccchhHHHHHH
Confidence 999999999999887 9999999999999988754 68999999999999999999999999876444899999999
Q ss_pred HHHHhhHHHHH
Q 013576 159 LREKHRPAVLL 169 (440)
Q Consensus 159 LR~k~r~~V~q 169 (440)
+|++|...+++
T Consensus 429 ~rkkh~a~lma 439 (848)
T KOG2222|consen 429 HRKKHLAVLMA 439 (848)
T ss_pred HHHHhHHhhhh
Confidence 99999988754
No 4
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=99.79 E-value=7.8e-19 Score=163.48 Aligned_cols=109 Identities=31% Similarity=0.626 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHHHHHHHChHHHHHHHhcCCCchhhhHhHHHHHhcccCChhhHHH
Q 013576 6 LLLDTVRTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLR 85 (440)
Q Consensus 6 lLEdAFWlLv~Lme~~Lp~yy~~~~~gl~~d~~vfe~LLk~~lP~L~~HL~~lgI~~~~f~~~WFLtLFs~~LPle~vlR 85 (440)
-+++|||+|+++++..++++|.++.++++..+..++.+++.++|+|++||.+.|+++..|+.+||+|+|++.+|.+.++|
T Consensus 106 ~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~l~~~l~~~~~~~~~~~~~w~~~lF~~~l~~~~~~~ 185 (214)
T PF00566_consen 106 DEEEAFWCFVQLLNYYLPDFFQPNFKGLQKILKIFEQLLKKHDPELYNHLKQLGVDPEIYAFPWFLTLFSRSLPFDDVLR 185 (214)
T ss_dssp HHHHHHHHHHHHHTHHGGGGTSTTHHHHHHHHHHHHHHHHHHTHHHHHHHHHTT-GGHHHHHHHHHTTTTTTS-HHHHHH
T ss_pred cccchhccccchhcccccccccccccccchhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHhhcCCcCCHHHHHH
Confidence 34589999999996668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHcHHHhh
Q 013576 86 VWDVLLYEGNRVMLFRTALALMELYGPALV 115 (440)
Q Consensus 86 IWD~fL~EG~kv~LfrVALAILk~~~d~LL 115 (440)
||| ++.+|.+++++++++||++.++++||
T Consensus 186 lwD-~l~~g~~~~l~~~~lail~~~~~~il 214 (214)
T PF00566_consen 186 LWD-FLLEGYKFFLFFIALAILKYLRDQIL 214 (214)
T ss_dssp HHH-HHHHCTTHHHHHHHHHHHHHTHHHHH
T ss_pred HHH-HHHcCCCcHHHHHHHHHHHHHHHHhC
Confidence 999 77799986689999999999999986
No 5
>COG5210 GTPase-activating protein [General function prediction only]
Probab=99.79 E-value=9.1e-19 Score=186.26 Aligned_cols=124 Identities=31% Similarity=0.537 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHhh-hhccCCCChHHHHHHHHHHHHHHHHHChHHHHHHHhcCCCchhhhHhHHHHHhcccCChhhHHH
Q 013576 7 LLDTVRTFVGIIDDY-FDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLR 85 (440)
Q Consensus 7 LEdAFWlLv~Lme~~-Lp~yy~~~~~gl~~d~~vfe~LLk~~lP~L~~HL~~lgI~~~~f~~~WFLtLFs~~LPle~vlR 85 (440)
+++|||||++||..+ +|+||.++++|++.++.+|..+++..+|+||.||...|+...+|+++||+|+|.+.+|++.++|
T Consensus 319 Ee~AF~~l~~L~~~~~l~~~~~~~~~G~~~~~~~l~~~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lr 398 (496)
T COG5210 319 EEQAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALR 398 (496)
T ss_pred hHHHHHHHHHHHHhccchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHH
Confidence 779999999999954 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHcHHHhhCCCCHHHHHHHHHccc
Q 013576 86 VWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLA 131 (440)
Q Consensus 86 IWD~fL~EG~kv~LfrVALAILk~~~d~LL~~kD~~eil~lLq~l~ 131 (440)
|||++|.+|..+ +|++++|++...++.++.+.+...+..++..+.
T Consensus 399 iwD~lf~eg~~~-l~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 443 (496)
T COG5210 399 IWDCLFLEGSSM-LFQLALAILKLLRDKLLKLDSDELLDLLLKQLF 443 (496)
T ss_pred HHHHHHHhccHH-HHHHHHHHHHhhhhhhhccCchhHHHHHHHhhh
Confidence 999999999998 999999999999999999877777777776543
No 6
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=5e-18 Score=173.41 Aligned_cols=139 Identities=20% Similarity=0.296 Sum_probs=127.2
Q ss_pred hHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHHHHHHHChHHHHHHHhcCCCchhhhHhHHHHHhcccCChhhHHH
Q 013576 6 LLLDTVRTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLR 85 (440)
Q Consensus 6 lLEdAFWlLv~Lme~~Lp~yy~~~~~gl~~d~~vfe~LLk~~lP~L~~HL~~lgI~~~~f~~~WFLtLFs~~LPle~vlR 85 (440)
+|.|||||+..|++. +.+.|...-||++.....++.|++..+|.||+||...||+.-.|+++|+.|||.+.||+.+++|
T Consensus 328 iEADsyWClskLLD~-IQDNYtfaQpGIq~kV~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmNcLLmRE~pl~~~iR 406 (484)
T KOG1092|consen 328 IEADAYWCLSKLLDG-IQDNYTFAQPGIQRKVKNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMNCLLMREFPLRCTIR 406 (484)
T ss_pred hhhhHHHHHHHHHHH-hhhhhhhcChhHHHHHHHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHHHHHHhhccchhHHH
Confidence 345999999999988 6788888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCch--HHHHHHHHHHHHcHHHhhCCCCHHHHHHHHHcccCCCC---ChHHHHHHHhh
Q 013576 86 VWDVLLYEGNRV--MLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTF---DSSQLVFTACM 146 (440)
Q Consensus 86 IWD~fL~EG~kv--~LfrVALAILk~~~d~LL~~kD~~eil~lLq~l~~~~~---D~deLI~~A~~ 146 (440)
+||.|+.++..+ ++.+||.|+|...+++|++ +||.+++.+||++|...+ +++.|+..|+.
T Consensus 407 lWDTY~aE~dgf~~FhvYvcAAFL~kW~~eL~e-~DFQ~~ilfLQnlPT~~W~d~eIellLseA~~ 471 (484)
T KOG1092|consen 407 LWDTYLAEPDGFNEFHVYVCAAFLLKWSSELME-NDFQELILFLQNLPTHNWSDREIELLLSEAFR 471 (484)
T ss_pred HHHHhhcCccchHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhcCCCCCccHHHHHHHHHHHHH
Confidence 999999985443 5788999999999999996 799999999999998876 57778888875
No 7
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.75 E-value=7.9e-18 Score=172.22 Aligned_cols=159 Identities=24% Similarity=0.429 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHhhh-hccCCCChHHHHHHHHHHHHHHHHHChHHHHHHHhcCCCchhhhHhHHHHHhcccCChhhHHH
Q 013576 7 LLDTVRTFVGIIDDYF-DGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLR 85 (440)
Q Consensus 7 LEdAFWlLv~Lme~~L-p~yy~~~~~gl~~d~~vfe~LLk~~lP~L~~HL~~lgI~~~~f~~~WFLtLFs~~LPle~vlR 85 (440)
+.+||-+|.+|+++.+ ..+|..+-+.+......|+..+++.+|+|+.||.++.+.|.+|..+|+.++|+..+|++..+|
T Consensus 416 ~~~AFiafANLLdkp~q~Aff~~d~s~m~~yf~tfe~~leenlp~L~~Hl~kl~l~PDiylidwiftlyskslpldlacR 495 (586)
T KOG2223|consen 416 LADAFIAFANLLDKPCQQAFFRVDHSSMLSYFATFEVFLEENLPKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACR 495 (586)
T ss_pred cHHHHHHHHHHhccHHHHHHHhcCcHHHHHHHHHHHHHHHhccHHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhh
Confidence 3499999999999986 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHcHHHhhCCCCHHHHHHHHHcccCCCCChHHHHHHHhhcccCCCHHHHHHHHHHhhH
Q 013576 86 VWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQELREKHRP 165 (440)
Q Consensus 86 IWD~fL~EG~kv~LfrVALAILk~~~d~LL~~kD~~eil~lLq~l~~~~~D~deLI~~A~~~~~~Is~~~Ie~LR~k~r~ 165 (440)
|||+|+.+|..+ +|+.+++||+++++.|+.+ |+..+.++|..+|.+....+.|...++..+. -|+|--.
T Consensus 496 IwDvy~rdgeeF-lfr~~lgIlklyepkLl~m-Df~~~~qfLtklp~dL~~eelF~~i~~~~~~---------sr~kkws 564 (586)
T KOG2223|consen 496 IWDVYCRDGEEF-LFRTALGILKLYEPKLLVM-DFIHVAQFLTKLPEDLTPEELFMHIAYIQMQ---------SRSKKWS 564 (586)
T ss_pred hhheeeecchHH-HHHHHHHHHHHccchHhhh-hHHHHHHHHHhCcccCCHHHHHHHHHHHhhh---------hhchhHH
Confidence 999999999997 9999999999999999996 9999999999998876666666666653221 3555567
Q ss_pred HHHHHHHHHHh
Q 013576 166 AVLLVVEERSK 176 (440)
Q Consensus 166 ~V~q~~eer~k 176 (440)
.|.+++.+..+
T Consensus 565 qvf~~i~kd~~ 575 (586)
T KOG2223|consen 565 QVFQEIDKDVN 575 (586)
T ss_pred HHHHHHHhhcc
Confidence 78887765543
No 8
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=99.70 E-value=6.3e-17 Score=150.43 Aligned_cols=89 Identities=36% Similarity=0.659 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHHHHHHHChHHHHHHHh-cCCCchhhhHhHHHHHhcccCChhhHHH
Q 013576 7 LLDTVRTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDY-LGVQVTWISGPWFLSIFVNILPWESVLR 85 (440)
Q Consensus 7 LEdAFWlLv~Lme~~Lp~yy~~~~~gl~~d~~vfe~LLk~~lP~L~~HL~~-lgI~~~~f~~~WFLtLFs~~LPle~vlR 85 (440)
+++|||+|+++|+++.+.||.++++|+..++.+|+.+++.++|+||+||.+ .|+++..|+.+||+|+|++.+|++.++|
T Consensus 109 e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~r 188 (199)
T smart00164 109 EEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLR 188 (199)
T ss_pred HHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHH
Confidence 779999999999998888899999999999999999999999999999996 9999999999999999999999999999
Q ss_pred HHHHHHhcCC
Q 013576 86 VWDVLLYEGN 95 (440)
Q Consensus 86 IWD~fL~EG~ 95 (440)
|||+||.+|.
T Consensus 189 iwD~~l~eG~ 198 (199)
T smart00164 189 IWDVLFAEGS 198 (199)
T ss_pred HHHHHHhcCC
Confidence 9999999995
No 9
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=99.67 E-value=4.2e-16 Score=154.58 Aligned_cols=134 Identities=19% Similarity=0.317 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHhhhhccCCC----ChHHHHHHHHHHHHHHHHHChHHHHHHHhcCCCchhhhHhHHHHHhcccCChhh
Q 013576 7 LLDTVRTFVGIIDDYFDGYYTE----EMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWES 82 (440)
Q Consensus 7 LEdAFWlLv~Lme~~Lp~yy~~----~~~gl~~d~~vfe~LLk~~lP~L~~HL~~lgI~~~~f~~~WFLtLFs~~LPle~ 82 (440)
+.|||+||+.+|.. ++++|.. +..|++..+..|..++++++-+||.||+..+|.|..|+++|+.+|++..||++.
T Consensus 218 EaDaFFCF~~LMse-irDnf~k~LDdS~~GI~~~Msr~~~~lk~~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpD 296 (370)
T KOG4567|consen 218 EADAFFCFTQLMSE-IRDNFIKTLDDSVGGIHFLMSRLSELLKKHDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPD 296 (370)
T ss_pred hhhHHHHHHHHHHH-HHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchh
Confidence 44999999999987 4555554 447999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCch-HHHHHHHHHHHHcHHHhhCCCCHHHHHHHHHcccCCCCChHHHHHHH
Q 013576 83 VLRVWDVLLYEGNRV-MLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVFTA 144 (440)
Q Consensus 83 vlRIWD~fL~EG~kv-~LfrVALAILk~~~d~LL~~kD~~eil~lLq~l~~~~~D~deLI~~A 144 (440)
|+||||.+|.+..++ ++.+|+.|+|-+.+..|++ .|+...+.+||+.|. .|+..++..|
T Consensus 297 vi~lWDsl~sD~~rfd~Ll~iCcsmlil~Re~il~-~DF~~nmkLLQ~yp~--tdi~~~l~~A 356 (370)
T KOG4567|consen 297 VIRLWDSLLSDPQRFDFLLYICCSMLILVRERILE-GDFTVNMKLLQNYPT--TDISKMLAVA 356 (370)
T ss_pred HHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHhcCCC--CCHHHHHHHH
Confidence 999999999975543 4899999999999999999 699999999999864 6888888665
No 10
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=99.58 E-value=8.4e-15 Score=154.40 Aligned_cols=141 Identities=19% Similarity=0.352 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHhhhhccCCCC-hHHHHHHHHHHHHHHHHHChHHHHHHHhcCCCchhhhHhHHHHHhcccCChhhHHHHH
Q 013576 9 DTVRTFVGIIDDYFDGYYTEE-MIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVW 87 (440)
Q Consensus 9 dAFWlLv~Lme~~Lp~yy~~~-~~gl~~d~~vfe~LLk~~lP~L~~HL~~lgI~~~~f~~~WFLtLFs~~LPle~vlRIW 87 (440)
-||-|+..++-+|+..||-.+ ..-++..+.+|.+++..|+|.|++||...|+.+.+|+.+||+|+|+.+||.+-.+.+|
T Consensus 454 laF~~~~~fi~kycq~fflkdns~vikeyLs~f~~l~AfhDpeL~qHl~~~~f~~eLyAiPwflT~Fshvlpl~kil~Lw 533 (725)
T KOG1093|consen 454 LAFACIATFIPKYCQHFFLKDNSNVIKEYLSMFSQLLAFHDPELLQHLIDIGFIPELYAIPWFLTMFSHVLPLHKILHLW 533 (725)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCHHHHHHHHHcCCcHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 799999999999999888874 4556778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHHHcHHHhhCCCCHHHHHHHHHcccCCCCChHHHHHHHhhcccCCCHH
Q 013576 88 DVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEA 154 (440)
Q Consensus 88 D~fL~EG~kv~LfrVALAILk~~~d~LL~~kD~~eil~lLq~l~~~~~D~deLI~~A~~~~~~Is~~ 154 (440)
|-++..|+.+ .+.+++|++...++.|++| ++.+.+.++.+.+ .+|+|..|.+++..+ ..|++
T Consensus 534 D~lml~~~SF-plmi~vAil~~lR~~LLa~-nfne~illf~d~p--dldId~~Ires~~l~-e~tP~ 595 (725)
T KOG1093|consen 534 DNLMLGHSSF-PLMIGVAILIQLRDPLLAC-NFNECILLFSDLP--DLDIDVCIRESYHLM-ETTPK 595 (725)
T ss_pred HHHhcCCCcc-HHHHHHHHHHHhhhhhhhC-CchhheeeeccCC--cccHHHHHHHHhhhh-hCCCC
Confidence 9999999997 9999999999999999997 8999999999987 578999999987544 34444
No 11
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.53 E-value=6.7e-14 Score=151.74 Aligned_cols=144 Identities=19% Similarity=0.366 Sum_probs=131.5
Q ss_pred cccchHHHHHHHHHHHHHhh-hhccCCCChHHHHHHHHHHHHHHHHHChHHHHHHHhcCCCchhhhHhHHHHHhcccCCh
Q 013576 2 LYITLLLDTVRTFVGIIDDY-FDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPW 80 (440)
Q Consensus 2 l~a~lLEdAFWlLv~Lme~~-Lp~yy~~~~~gl~~d~~vfe~LLk~~lP~L~~HL~~lgI~~~~f~~~WFLtLFs~~LPl 80 (440)
++.|-+++||=++--||-+. ++.=|.++|..++..++.+..++..++|+||+||+.+.|.|+.|+.+||+|+|+.-||+
T Consensus 678 llh~~e~~afellk~LM~~r~~r~qy~pdm~~lq~qmyqLsrl~hd~hrdlyn~le~~ei~pslyAapw~lt~fasQf~l 757 (948)
T KOG4436|consen 678 LLHMSEENAFELLKFLMFDRGMRKQYRPDMKKLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFASQFPL 757 (948)
T ss_pred HhhcchhhHHHHHHHHHHHHhhHhhhchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHhhCcc
Confidence 45677889999999999876 57888999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHHHcHHHhhCCCCHHHHHHHHHcccCCCC--ChHHHHHHHhh
Q 013576 81 ESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTF--DSSQLVFTACM 146 (440)
Q Consensus 81 e~vlRIWD~fL~EG~kv~LfrVALAILk~~~d~LL~~kD~~eil~lLq~l~~~~~--D~deLI~~A~~ 146 (440)
..|.||+|.+|..|..+ +|++|+++|..++..|+.+++++.|+.++++..+... ....++...+.
T Consensus 758 Gfvarvfd~~flq~tev-ifK~a~~llsv~k~~l~e~dn~e~i~d~~k~~~p~~~~~emeki~~qvf~ 824 (948)
T KOG4436|consen 758 GFVARVFDLIFLQGTEV-IFKVALSLLSVHKQLLLEKDNFEEIVDFLKTTLPKMEHTEMEKIIKQVFE 824 (948)
T ss_pred hHHHHHHHHHHhhccch-hhhhHHHHHHhhHHHHHhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Confidence 99999999999999998 9999999999999999999999999999999766543 45566666653
No 12
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=99.42 E-value=2e-13 Score=142.11 Aligned_cols=133 Identities=27% Similarity=0.460 Sum_probs=121.5
Q ss_pred chHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHHHHHHHChHHHHHHHhcCCCchhhhHhHHHHHhcccCChhhHH
Q 013576 5 TLLLDTVRTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVL 84 (440)
Q Consensus 5 ~lLEdAFWlLv~Lme~~Lp~yy~~~~~gl~~d~~vfe~LLk~~lP~L~~HL~~lgI~~~~f~~~WFLtLFs~~LPle~vl 84 (440)
+.+|+|||+++.+|..+-.+.|..+++|++.....++.+++.+.|+++.|+...++...+|..+||+|+|...+|++.+.
T Consensus 244 ~~ee~af~~lv~l~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~p~~~~~ 323 (397)
T KOG1102|consen 244 LPEEEAFPLLVKLMKNYGLDLLSPGFSGLQRSFRQLQRLLKELIPKLLDHLLPQGIELSMYASQWFLTLFAAKFPLELVL 323 (397)
T ss_pred CchhhhhhhhhhhhhccchhcccccCCchhhhHHHHHHHHHHhChhhhhhccccccccceeccceeeEeeeccccHHHHH
Confidence 44789999999999987455559999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHcHHHhhCCCCHHHHHHHHHcccCCCCChHH
Q 013576 85 RVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQ 139 (440)
Q Consensus 85 RIWD~fL~EG~kv~LfrVALAILk~~~d~LL~~kD~~eil~lLq~l~~~~~D~de 139 (440)
||||+++.+|..+ ++++++++++...+.++.. +++.++.+++......+|...
T Consensus 324 ri~d~~~~~g~~i-~~~~~~~l~~~~~~~~~~~-~~e~~~~~l~~~~~~~~~~~~ 376 (397)
T KOG1102|consen 324 RIWDALFVEGVSI-LFRFSLALLKHKADDLLDL-DFESLLSYLRVDLPKSYDSEL 376 (397)
T ss_pred HHhHHHHHhchHH-HHHHHHHHhhhhhHHHhhc-cHHHHHHHHhcccHhhcCccc
Confidence 9999999999887 9999999999999999996 699999999986665555443
No 13
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=99.25 E-value=3.4e-11 Score=124.44 Aligned_cols=134 Identities=20% Similarity=0.322 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHHHHHHHChHHHHHHHhcCCCchhhhHhHHHHHhcccCChhhHHHHHH
Q 013576 9 DTVRTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWD 88 (440)
Q Consensus 9 dAFWlLv~Lme~~Lp~yy~~~~~gl~~d~~vfe~LLk~~lP~L~~HL~~lgI~~~~f~~~WFLtLFs~~LPle~vlRIWD 88 (440)
+.|-+|.+|++.|+|.=-++...- ..+|.-|+.-|.|+|+.||+...|.|.+|+..||-+||+++.+.+.+.-+||
T Consensus 132 d~fN~F~ai~~kYIPkdcrpkg~~----Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~Wd 207 (669)
T KOG3636|consen 132 DEFNVFFAITTKYIPKDCRPKGQI----FHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWD 207 (669)
T ss_pred hhhhhhHhhhhcccCCCCCCCCcc----chHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 899999999999987544444322 3468999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHHHHcHHHhhCCC--CHHHHHHHHHcccCCC--CChHHHHHHHhh
Q 013576 89 VLLYEGNRVMLFRTALALMELYGPALVTTK--DAGDAITLLQSLAGST--FDSSQLVFTACM 146 (440)
Q Consensus 89 ~fL~EG~kv~LfrVALAILk~~~d~LL~~k--D~~eil~lLq~l~~~~--~D~deLI~~A~~ 146 (440)
.|+-.|..+++|.++|-||--.++.||+.+ +-++++.+|.+.|... -|+.+|+..|.+
T Consensus 208 lY~qqaDPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~eDvpDffsLAqy 269 (669)
T KOG3636|consen 208 LYIQQADPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSVEDVPDFFSLAQY 269 (669)
T ss_pred HHHhcCCceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcccccchhHHHHHHH
Confidence 999999998889999999999999999865 5689999999987653 388889988865
No 14
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=99.09 E-value=6.6e-10 Score=111.95 Aligned_cols=147 Identities=15% Similarity=0.166 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHHHHHHHChHHHHHHHhcCCCchhhhHhHHHHHhcccC-ChhhHHH
Q 013576 7 LLDTVRTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNIL-PWESVLR 85 (440)
Q Consensus 7 LEdAFWlLv~Lme~~Lp~yy~~~~~gl~~d~~vfe~LLk~~lP~L~~HL~~lgI~~~~f~~~WFLtLFs~~L-Ple~vlR 85 (440)
+.+|+=+.-.|-..++++|..+++.+....+.++..+++...|+||+.|.+-.+ -.+|+.+|++|+|++.+ |+..++|
T Consensus 160 E~~Al~l~E~L~~~~lrdfM~~Tld~t~~qL~~i~~iIk~~nP~Ly~~l~~aev-gtlFaLsWllTWFaH~L~~~~~vvR 238 (395)
T KOG2595|consen 160 ELEALSLMEELSTLHLRDFMLPTLDFTVRQLRLISPIIKEVNPELYQFLQSAEV-GTLFALSWLLTWFAHNLKDIRIVVR 238 (395)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHhhcc-cceehhhHHHHHHhhcchhHHHHHH
Confidence 557887777777777899999999999999999999999999999999999888 46899999999999866 5999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHcHHHhhCCC-CHHHHHHHHHcccCCCCChHHHHHHHhhcccCCCHHHH
Q 013576 86 VWDVLLYEGNRVMLFRTALALMELYGPALVTTK-DAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARL 156 (440)
Q Consensus 86 IWD~fL~EG~kv~LfrVALAILk~~~d~LL~~k-D~~eil~lLq~l~~~~~D~deLI~~A~~~~~~Is~~~I 156 (440)
++|+|+.-..-. .++++-+++..++.+|++|. |+.-+..+|+.+|.+ ...|++|..++..+.+.+...+
T Consensus 239 lfD~Flas~pl~-piyv~A~vvL~r~~eIl~~~~dms~~H~lLs~iPq~-lp~d~lik~s~~~i~~~~~t~~ 308 (395)
T KOG2595|consen 239 LFDFFLASHPLL-PIYVYAAVVLYRRSEILKCDCDMSLLHGLLSTIPQD-LPYDTLIKESVLLITRKPATLL 308 (395)
T ss_pred HHHHHHhcCcch-hHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhCccc-cCHHHHHHHHHHHHhcCChhhh
Confidence 999999988765 78899999999999999985 778888899988764 6799999999887777776655
No 15
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=5.8e-09 Score=110.69 Aligned_cols=120 Identities=17% Similarity=0.272 Sum_probs=103.4
Q ss_pred ccCCCChHHHHHHHHHHHHHHHHHChHHHHHHHhcCCCchhhhHhHHHHHhcccCChhhHHHHHH-HHHhcCCchH-HHH
Q 013576 24 GYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWD-VLLYEGNRVM-LFR 101 (440)
Q Consensus 24 ~yy~~~~~gl~~d~~vfe~LLk~~lP~L~~HL~~lgI~~~~f~~~WFLtLFs~~LPle~vlRIWD-~fL~EG~kv~-Lfr 101 (440)
+-+.++.|-+......+.+++...++.||.||.++||+|.+|..+|.-.||.+.||+..++-||| ++++++.... +-.
T Consensus 238 d~l~~~l~~v~e~~~~~~~lL~~~D~~Lh~HL~~l~i~pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~pr~~Lv~~ 317 (625)
T KOG1091|consen 238 DALMPGLPPVFEANFAQYHLLAKVDKSLHSHLVELGIEPQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDSPRGILVAC 317 (625)
T ss_pred hhhcccchhHHHHhhhhhhhhhhccHHHHHHHHhcCCchHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccCchHHHHHH
Confidence 33444556677788899999999999999999999999999999999999999999999999999 8888887752 345
Q ss_pred HHHHHHHHcHHHhhCCCCHHHHHHHHHcccCCCCChHHHHHHHh
Q 013576 102 TALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVFTAC 145 (440)
Q Consensus 102 VALAILk~~~d~LL~~kD~~eil~lLq~l~~~~~D~deLI~~A~ 145 (440)
+.+++|.+.++.|+.....+ ++++|-++|. ..|.+.+|..|.
T Consensus 318 m~VsmLL~IRd~Llss~~~t-cL~~Lm~yP~-~~Dv~~~iekAl 359 (625)
T KOG1091|consen 318 MFVSMLLYIRDSLLSSEYQT-CLQYLMNYPE-IIDVDKFIEKAL 359 (625)
T ss_pred HHHHHHHHHHHHHHHhcchh-HHHHHhcCCC-cCcHHHHHHHHH
Confidence 88999999999999975444 8898888875 689999999885
No 16
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=98.69 E-value=7.4e-08 Score=99.69 Aligned_cols=119 Identities=20% Similarity=0.419 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhhhhccC--CCChHHHHHHHHHHHHHHHHHChHHHHHHHhcCCCc--hhhhHhHHHHHhcccCChhhHH
Q 013576 9 DTVRTFVGIIDDYFDGYY--TEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQV--TWISGPWFLSIFVNILPWESVL 84 (440)
Q Consensus 9 dAFWlLv~Lme~~Lp~yy--~~~~~gl~~d~~vfe~LLk~~lP~L~~HL~~lgI~~--~~f~~~WFLtLFs~~LPle~vl 84 (440)
|+||||+++|.+. +| +|....+-..+..+.+|++..+|..|+||..+|-+- .+|+-+|++.+|-+.||-..++
T Consensus 588 dtfwcfvglmqna---~fv~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~ed~lellfchrwlllcfkref~ea~ai 664 (781)
T KOG2224|consen 588 DTFWCFVGLMQNA---FFVCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHGEDGLELLFCHRWLLLCFKREFPEAEAI 664 (781)
T ss_pred cchhhhhhhhcce---EEEeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhhcccHHHHH
Confidence 6677777776642 22 233345555667899999999999999999998653 5789999999999999999999
Q ss_pred HHHHHHHhcC-CchHHHHHHHHHHHHcHHHhhCCC-CHHHHHHHHHcc
Q 013576 85 RVWDVLLYEG-NRVMLFRTALALMELYGPALVTTK-DAGDAITLLQSL 130 (440)
Q Consensus 85 RIWD~fL~EG-~kv~LfrVALAILk~~~d~LL~~k-D~~eil~lLq~l 130 (440)
|||...+..- ..++.+.+++||+..+.++.+..+ -.++.+-.+.++
T Consensus 665 riweacwa~y~tdyfhlficlaiiaiy~ddvi~q~l~~demllhf~nl 712 (781)
T KOG2224|consen 665 RIWEACWAHYLTDYFHLFICLAIIAIYADDVIAQNLAPDEMLLHFGNL 712 (781)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHhhcCchhHHHhhhhh
Confidence 9999998653 233467799999999999888743 334444444443
No 17
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=3e-08 Score=95.14 Aligned_cols=66 Identities=27% Similarity=0.424 Sum_probs=63.4
Q ss_pred chHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHHHHHHHChHHHHHHHhcCCCchhhhHhHH
Q 013576 5 TLLLDTVRTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWF 70 (440)
Q Consensus 5 ~lLEdAFWlLv~Lme~~Lp~yy~~~~~gl~~d~~vfe~LLk~~lP~L~~HL~~lgI~~~~f~~~WF 70 (440)
+..+||||||+++|+.|++|||..++..++.|-.++..|+++..|-.|.||...++++.+|.+.||
T Consensus 202 mp~rdaf~~~vqicekylqgy~~sgleaiq~dg~il~~Llkk~~~p~~rH~~~~kvdp~lym~ewF 267 (267)
T KOG2221|consen 202 MPARDAFWCFVQICEKYLQGYYSSGLEAIQNDGGILEGLLKKASPPPYRHLGGDKVDPLLYMTEWF 267 (267)
T ss_pred ccHHHHHHHHHHHHHHHcccccccchhhhhcccHHHHHHHHhcCCCCCcccccCCCCHHHhhhccC
Confidence 445699999999999999999999999999999999999999999999999999999999999998
No 18
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=98.50 E-value=2.4e-07 Score=99.11 Aligned_cols=122 Identities=20% Similarity=0.307 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHHHHHHHChHHHHHHHhcCCCchhhhHhHHHHHhcccCChhhHHHHH
Q 013576 8 LDTVRTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVW 87 (440)
Q Consensus 8 EdAFWlLv~Lme~~Lp~yy~~~~~gl~~d~~vfe~LLk~~lP~L~~HL~~lgI~~~~f~~~WFLtLFs~~LPle~vlRIW 87 (440)
.+|||||+.+|++ +..-|..+..|++.....+..+++..+|.+|.||+.++.....|+++|++..|-+.|.++.++++|
T Consensus 301 ~~aFwcFv~fm~~-~~~nF~~d~~~~~~Ql~~~~~li~~~dp~l~~hLe~~d~~~~~f~fr~l~v~frrEf~~ed~l~LW 379 (488)
T KOG2197|consen 301 VEAFWCFVGFMDR-LRHNFRIDQSGMQTQLAQLSSLIQELDPRLYQHLEKLDAGDLFFCFRMLLVPFRREFEFEDSLRLW 379 (488)
T ss_pred hHHHHHHHHHHHH-HhhcCccccccHHHHhhhhhhhccccCHHHHhhccccCCCccceeeehhhcccccccccccHHHHH
Confidence 3999999999999 455667788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCc-hHHHHHHHHHHHHcHHHhhCCC-CHHHHHHHHHcc
Q 013576 88 DVLLYEGNR-VMLFRTALALMELYGPALVTTK-DAGDAITLLQSL 130 (440)
Q Consensus 88 D~fL~EG~k-v~LfrVALAILk~~~d~LL~~k-D~~eil~lLq~l 130 (440)
.+++..-.. -+.++++.+++....+.|+... ++++++..+..+
T Consensus 380 Evlw~~~~~~~f~~~~~~~~l~~~~~~l~~~~~~~~e~l~~i~~~ 424 (488)
T KOG2197|consen 380 EVLWTDLPSPHFHLYVAPAILNKDPQTLMEQGKSFNEVLKHVNLL 424 (488)
T ss_pred HHHHhcCccchHHHHHHHhhhhcchHHHHhcCccchhHHhhcccc
Confidence 999975322 2378899999999888887643 555555555543
No 19
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=98.38 E-value=3.9e-07 Score=100.11 Aligned_cols=141 Identities=18% Similarity=0.215 Sum_probs=118.4
Q ss_pred cchHHHHHHHHHHHHHhh-hhccCCCChHHHHHHHHHHHHHHHHHCh-HHHHHHHhcCCCchhhhHhHHHHHhcccCChh
Q 013576 4 ITLLLDTVRTFVGIIDDY-FDGYYTEEMIEAQVDQLVFEELIRERFP-KLVHHLDYLGVQVTWISGPWFLSIFVNILPWE 81 (440)
Q Consensus 4 a~lLEdAFWlLv~Lme~~-Lp~yy~~~~~gl~~d~~vfe~LLk~~lP-~L~~HL~~lgI~~~~f~~~WFLtLFs~~LPle 81 (440)
-+-+|.+|-.++.+|..| ++..|.+.+.-+-..+..++.......| +++.|+.+.+++.++|...||++.|++.+|+.
T Consensus 293 ~~~~E~assv~~~lm~~~rl~~l~kpe~~~l~~~~~q~e~~~q~~sp~dl~sH~~eq~~h~S~~~rs~flt~~ltt~Pi~ 372 (948)
T KOG4436|consen 293 QMPVEEASSVKVQLMILYRLRELSKPEMEPLGLCMFQLECTNQDQSPMDLFSHFPEQHFHTSMYARSWFLTNFLTTFPIF 372 (948)
T ss_pred cCcHHHHHHHHHHHHHhhcccccCCcccchhHHHHHhhcccccccchhHHhhcccccCCCccHHHHHHHHHhhcccCchh
Confidence 456789999999999998 8999999998887788899999999999 99999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHcHHHhhCCCCHHHHHHHHHcccCCCC--ChHHHHHHHh
Q 013576 82 SVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTF--DSSQLVFTAC 145 (440)
Q Consensus 82 ~vlRIWD~fL~EG~kv~LfrVALAILk~~~d~LL~~kD~~eil~lLq~l~~~~~--D~deLI~~A~ 145 (440)
..-|+.|+|.++|-.. .|++++|++....+.=+...|+.....+++......+ +++.+...+.
T Consensus 373 ~a~r~~~~f~~egllk-~fr~~ia~~~~~~d~~~~s~D~EG~~~~~qr~~s~~vggtp~k~~t~a~ 437 (948)
T KOG4436|consen 373 MAARISDTFSSEGLLK-RFRDSIAYLHQLRDIELESLDMEGMLSYFQRNRSNTVGGTPDKLRTAAW 437 (948)
T ss_pred hccccccccccccHHH-HHhhhHHHHHHHhhhhhhccCccccccchhhccccccCCCCchHHHHHH
Confidence 9999999999999887 8899999994444443444688888888875444333 4555555554
No 20
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=3.1e-05 Score=77.58 Aligned_cols=138 Identities=20% Similarity=0.324 Sum_probs=102.8
Q ss_pred ccCCCChHHHHHHHHHHHHHHHHHChHHHHHHHhcCCCchhhhHhHHHHHhcccCChhhHHHHHHHHHhcCCchHHHHHH
Q 013576 24 GYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTA 103 (440)
Q Consensus 24 ~yy~~~~~gl~~d~~vfe~LLk~~lP~L~~HL~~lgI~~~~f~~~WFLtLFs~~LPle~vlRIWD~fL~EG~kv~LfrVA 103 (440)
.....++..+...+-.|..++.+++...++.+....-++......|--.+| +.+|+-...|++|+|+.+|.++ +++++
T Consensus 167 rlidqsflafesscmtfgdlvnkycqaahklmvavsedvlqvyadwqrwlf-gelplcyfarvfdvflvegykv-lyrva 244 (559)
T KOG2801|consen 167 RLIDQSFLAFESSCMTFGDLVNKYCQAAHKLMVAVSEDVLQVYADWQRWLF-GELPLCYFARVFDVFLVEGYKV-LYRVA 244 (559)
T ss_pred hhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-ccchHHHHHHHhhheeecchHH-HHHHH
Confidence 344455556666778899999999999888877666566566668887777 6799999999999999999998 99999
Q ss_pred HHHHHHcHHHh----hCCCCH-HHHHHHHHcccCCCCChHHHHHHHhhcccCCCHHHHHHHHHHhhH
Q 013576 104 LALMELYGPAL----VTTKDA-GDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQELREKHRP 165 (440)
Q Consensus 104 LAILk~~~d~L----L~~kD~-~eil~lLq~l~~~~~D~deLI~~A~~~~~~Is~~~Ie~LR~k~r~ 165 (440)
+||++.+.+-- +.+++. .+|-.+.+++.. +..++.++..|+. +.-++.+.|+-|...+..
T Consensus 245 lailkffhkvragqplesdsvkqdirtfvrdiak-tvspekllekafa-irlfsrkeiqllqmanek 309 (559)
T KOG2801|consen 245 LAILKFFHKVRAGQPLESDSVKQDIRTFVRDIAK-TVSPEKLLEKAFA-IRLFSRKEIQLLQMANEK 309 (559)
T ss_pred HHHHHHHHHhhcCCCCccchHHHHHHHHHHHHHh-hCCHHHHHHHHHH-HHHhhHHHHHHHHHhhHH
Confidence 99999875432 232222 445566666654 5778999999985 456788888777655443
No 21
>PF14961 BROMI: Broad-minded protein
Probab=97.38 E-value=0.0013 Score=76.03 Aligned_cols=124 Identities=19% Similarity=0.314 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHChHHHHHHHhcCCCchhhhHhHHHHHhcccCChhhHHHHHHHHHhcCCchHHHHHHHHHHHHcHHHhh
Q 013576 36 DQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALV 115 (440)
Q Consensus 36 d~~vfe~LLk~~lP~L~~HL~~lgI~~~~f~~~WFLtLFs~~LPle~vlRIWD~fL~EG~kv~LfrVALAILk~~~d~LL 115 (440)
-+..++.+++..+|.++.-|.-.|..+..++.+|+--+|-+.+||.-++...=+.+..|..+ -+++++|||++.++.|+
T Consensus 1166 ~~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil~G~dy-qvY~~VailkHlq~~il 1244 (1296)
T PF14961_consen 1166 SCHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWNYLDWPEICHYIAICILYGPDY-QVYICVAILKHLQPEIL 1244 (1296)
T ss_pred HHHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhcCccc-eeehhHHHHHHhhHHHH
Confidence 46789999999999999999999999999999999999999999999988888888899997 88999999999999999
Q ss_pred CCCCHHHHHHHHHcccCCCCChHHHHHHHhhcccCCCHHHHHHHHHHhhHHHHHHHH
Q 013576 116 TTKDAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQELREKHRPAVLLVVE 172 (440)
Q Consensus 116 ~~kD~~eil~lLq~l~~~~~D~deLI~~A~~~~~~Is~~~Ie~LR~k~r~~V~q~~e 172 (440)
+.....++..+|+.-+-.-|.+.+ + -+.++.|+.+||..|+..+.
T Consensus 1245 q~~q~q~L~~flke~~l~gF~~~~-----~-------~~yM~~Le~~yR~~vL~~m~ 1289 (1296)
T PF14961_consen 1245 QHTQTQDLQVFLKEEALRGFRVSD-----Y-------LEYMENLEQRYRPRVLTDMR 1289 (1296)
T ss_pred HhhhhchHHHHhhhccccceeHHh-----H-------HHHHHHHHHHhHhHHHHHHH
Confidence 865555566666653322222211 1 14678999999999999874
No 22
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=92.85 E-value=0.043 Score=36.60 Aligned_cols=27 Identities=11% Similarity=0.201 Sum_probs=24.3
Q ss_pred HHHHHHHhhhHHHhhcHHHHHHHHHHH
Q 013576 256 VELCSLLEDKRSAVLRAEELETALMEM 282 (440)
Q Consensus 256 ~~l~rLld~~~~~~l~~~el~~~l~em 282 (440)
.++|+.+|.|+||.|+++||..+|..|
T Consensus 3 ~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 3 KEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 378999999999999999999988764
No 23
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=91.94 E-value=0.095 Score=50.14 Aligned_cols=60 Identities=8% Similarity=0.091 Sum_probs=52.7
Q ss_pred cCccCChhHhhccCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhcHHHHHHHHHHHhhhhHHHHHH
Q 013576 223 KEPAANLDEMLSGLSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLS 292 (440)
Q Consensus 223 ~d~~~~f~~~~~~L~~~~~~~~~~~~~~~~~l~~~l~rLld~~~~~~l~~~el~~~l~em~k~d~~~~L~ 292 (440)
++-+ +|+.+|....|.++... +...+|+..|.|.++.++|+||..||+...+|.+.++|+
T Consensus 44 ~~~~-~F~~i~~~~fp~gd~~~---------y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~ 103 (193)
T KOG0044|consen 44 LTLE-EFREIYASFFPDGDASK---------YAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLK 103 (193)
T ss_pred cCHH-HHHHHHHHHCCCCCHHH---------HHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhh
Confidence 4555 89999999999443333 778999999999999999999999999999999999998
No 24
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=75.46 E-value=1.3e+02 Score=34.48 Aligned_cols=76 Identities=24% Similarity=0.277 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhhHHHhhcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Q 013576 254 LKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQ 330 (440)
Q Consensus 254 l~~~l~rLld~~~~~~l~~~el~~~l~em~k~d~~~~L~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (440)
|..||-.|=++. |.+..==.+...|-.=.=++.+++-+++.-.|..+.+.|.+.|.++++.=+..-.-|--.++.+
T Consensus 476 L~~ELqqLReER-dRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~l 551 (739)
T PF07111_consen 476 LSLELQQLREER-DRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSL 551 (739)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 455555444332 2221111233333333445677777777777777777777777777776554444444444444
No 25
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=74.74 E-value=1.5 Score=28.99 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=21.6
Q ss_pred HHHHHHhhhHHHhhcHHHHHHHHH
Q 013576 257 ELCSLLEDKRSAVLRAEELETALM 280 (440)
Q Consensus 257 ~l~rLld~~~~~~l~~~el~~~l~ 280 (440)
.+|+.+|.|+++.|+++||..+|.
T Consensus 4 ~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 4 EAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHH
Confidence 689999999999999999999886
No 26
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=72.55 E-value=1.5e+02 Score=33.53 Aligned_cols=97 Identities=30% Similarity=0.422 Sum_probs=66.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhhHHHhhcHHHHHHHHHHHhhhhHH--------------HHHHHHHHHHHHHHHHHHHHHh
Q 013576 245 RDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNR--------------RQLSARIEQLEQEVAELQQSLA 310 (440)
Q Consensus 245 ~~~~~~~~~l~~~l~rLld~~~~~~l~~~el~~~l~em~k~d~~--------------~~L~~~~e~l~~~~~~~~~~~~ 310 (440)
+-+++++.=|..+++.|-+++....-+-.+|+..|.++-.+... ..|.++++.|..++..|..-+.
T Consensus 25 a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlq 104 (617)
T PF15070_consen 25 AQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQ 104 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777799999999999999999999999999997644432 3677777777777777765554
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcH---HHhhhhHhh
Q 013576 311 DKREQESAMIQVLMKVEQEQRITE---DARRNAEQD 343 (440)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 343 (440)
. |-.+..+|-.|. -|||.++.| ..++..|+.
T Consensus 105 a-qv~~ne~Ls~L~-~EqEerL~ELE~~le~~~e~~ 138 (617)
T PF15070_consen 105 A-QVENNEQLSRLN-QEQEERLAELEEELERLQEQQ 138 (617)
T ss_pred H-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3 222344443332 267777665 445555543
No 27
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=71.55 E-value=52 Score=33.30 Aligned_cols=74 Identities=27% Similarity=0.416 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhhhHHHhhcHHHHHHHHHHHhhhhHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHHHHHHHH
Q 013576 250 QVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQ---EVAELQQSLADKREQESAMIQVLMKV 326 (440)
Q Consensus 250 ~~~~l~~~l~rLld~~~~~~l~~~el~~~l~em~k~d~~~~L~~~~e~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (440)
.|.||+..|--+++-.. ..+. ..+.++.|+-..++|...-+.|++ ++....+-+.+-+++..+|=.-|-++
T Consensus 167 kV~WLR~~L~Ei~Ea~e----~~~~--~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l 240 (269)
T PF05278_consen 167 KVDWLRSKLEEILEAKE----IYDQ--HETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGEL 240 (269)
T ss_pred chHHHHHHHHHHHHHHH----HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37999998877664321 1111 235666666666666555444444 44444455666666666666666666
Q ss_pred HHh
Q 013576 327 EQE 329 (440)
Q Consensus 327 ~~~ 329 (440)
|.+
T Consensus 241 ~~~ 243 (269)
T PF05278_consen 241 EME 243 (269)
T ss_pred HHH
Confidence 544
No 28
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=71.50 E-value=16 Score=28.49 Aligned_cols=42 Identities=33% Similarity=0.547 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhcHHHhhhhHhhHHHhHH
Q 013576 289 RQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRY 349 (440)
Q Consensus 289 ~~L~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (440)
.+|+.+|.+|.++++.+|....+-++ |-||...--|.-++.|
T Consensus 13 q~L~~kvdqLs~dv~~lr~~v~~ak~-------------------EAaRAN~RlDN~a~sY 54 (56)
T PF04728_consen 13 QTLNSKVDQLSSDVNALRADVQAAKE-------------------EAARANQRLDNIAQSY 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHhhHhhc
Confidence 46788888888888888866543332 5566666667777766
No 29
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=68.71 E-value=2.7 Score=26.89 Aligned_cols=21 Identities=10% Similarity=0.221 Sum_probs=19.6
Q ss_pred HHHHHHhhhHHHhhcHHHHHH
Q 013576 257 ELCSLLEDKRSAVLRAEELET 277 (440)
Q Consensus 257 ~l~rLld~~~~~~l~~~el~~ 277 (440)
..|+.+|.|+||.++++||..
T Consensus 3 ~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 3 DAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHTTTSSSEEEHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHH
Confidence 479999999999999999987
No 30
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=66.98 E-value=1.5e+02 Score=34.30 Aligned_cols=110 Identities=25% Similarity=0.322 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHhhhHHHhhcHHHHHHHHHHHhhhhHH------HHH-------HHHHH----HHHHHHHHHHHHHhhH
Q 013576 250 QVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNR------RQL-------SARIE----QLEQEVAELQQSLADK 312 (440)
Q Consensus 250 ~~~~l~~~l~rLld~~~~~~l~~~el~~~l~em~k~d~~------~~L-------~~~~e----~l~~~~~~~~~~~~~~ 312 (440)
-|..||..|.-...+|...--+.-.|.-||-+++++.-. +++ +.+.| .||.++.++.+-|..-
T Consensus 25 e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~ 104 (769)
T PF05911_consen 25 EAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLAES 104 (769)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357799999999999999999999999999999987654 122 12222 3555666665555332
Q ss_pred HHHHHHHHH--------------HHHHHHHhhhhcHHHhhhhHhhHHHhHHHHHHHHHHHH
Q 013576 313 REQESAMIQ--------------VLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYE 359 (440)
Q Consensus 313 ~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (440)
.-.-.++-- ---+.|.|.+..-----+.|.+-+.-||-++|+++..|
T Consensus 105 ~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kele 165 (769)
T PF05911_consen 105 AAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELE 165 (769)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222121111 11233444444433345678899999999999987653
No 31
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=65.67 E-value=99 Score=27.51 Aligned_cols=77 Identities=25% Similarity=0.294 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhhhHHHhhcHHHHHHHHHHHhhhhHH----H---------HHHHHHHHHHHHHHHHHHHHhhHHHH---
Q 013576 252 VWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNR----R---------QLSARIEQLEQEVAELQQSLADKREQ--- 315 (440)
Q Consensus 252 ~~l~~~l~rLld~~~~~~l~~~el~~~l~em~k~d~~----~---------~L~~~~e~l~~~~~~~~~~~~~~~~~--- 315 (440)
.=|+.++....+. .-+|..++.++.++..+... + .|+..-++=+.+...|.-.+.+|+.+
T Consensus 23 ~~Lk~ec~~F~~k----i~~F~~iv~~~~~~~~~~A~~VE~eKlkAIG~RN~l~s~~k~R~~~~q~lq~~I~Ek~~eLER 98 (120)
T PF14931_consen 23 QELKEECKEFVEK----ISEFQKIVKGFIEILDELAKRVENEKLKAIGARNLLKSEAKQREAQQQQLQALIAEKKMELER 98 (120)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3477777666554 44788888888877774443 3 34445566667777777777777643
Q ss_pred HHHHHHHHHHHHHhhhh
Q 013576 316 ESAMIQVLMKVEQEQRI 332 (440)
Q Consensus 316 ~~~~~~~~~~~~~~~~~ 332 (440)
=.+=.|-|.+||+||+.
T Consensus 99 l~~E~~sL~kve~eQ~~ 115 (120)
T PF14931_consen 99 LRSEYESLQKVEQEQNE 115 (120)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34567888899988874
No 32
>PRK11637 AmiB activator; Provisional
Probab=65.55 E-value=1.2e+02 Score=32.23 Aligned_cols=35 Identities=17% Similarity=0.408 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 013576 291 LSARIEQLEQEVAELQQSLADKREQESAMIQVLMK 325 (440)
Q Consensus 291 L~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (440)
+..+.+++++++.++.+.+.+.+.+...+.+-|-.
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~ 79 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKK 79 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433333333333
No 33
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=64.07 E-value=9.2 Score=29.47 Aligned_cols=41 Identities=12% Similarity=0.272 Sum_probs=35.8
Q ss_pred HHHHHHHHHChHHHHHHHhcCCCchhhhHhHHHHHhcccCC
Q 013576 39 VFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILP 79 (440)
Q Consensus 39 vfe~LLk~~lP~L~~HL~~lgI~~~~f~~~WFLtLFs~~LP 79 (440)
.|..+--+++|+.-..|++.||+.++-..+=|++||+.+..
T Consensus 5 ~FmqIaMK~lPEak~~L~k~GIeLsme~~qP~m~L~~~VM~ 45 (56)
T PF10815_consen 5 EFMQIAMKYLPEAKEELDKKGIELSMEMLQPLMQLLTKVMN 45 (56)
T ss_pred HHHHHHHHHhHHHHHHHHHcCccCCHHHHHHHHHHHHHHHH
Confidence 36667779999999999999999999999999999987653
No 34
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=60.28 E-value=9.4 Score=28.85 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=24.9
Q ss_pred HHHHHHhhhHHHhhcHHHHHHHHHHHhhhh
Q 013576 257 ELCSLLEDKRSAVLRAEELETALMEMVKQD 286 (440)
Q Consensus 257 ~l~rLld~~~~~~l~~~el~~~l~em~k~d 286 (440)
++|+.+|.|++|.|+.+||...+..+...-
T Consensus 4 ~~F~~~D~d~~G~i~~~el~~~~~~~~~~~ 33 (66)
T PF13499_consen 4 EAFKKFDKDGDGYISKEELRRALKHLGRDM 33 (66)
T ss_dssp HHHHHHSTTSSSEEEHHHHHHHHHHTTSHS
T ss_pred HHHHHHcCCccCCCCHHHHHHHHHHhcccc
Confidence 688999999999999999998888776543
No 35
>PRK10884 SH3 domain-containing protein; Provisional
Probab=59.41 E-value=1.1e+02 Score=29.76 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013576 354 LEEKYEKAMASVAQMEKRAVMAESMLEA 381 (440)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (440)
|.+.|.++-..|+...+.+-.++..++.
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777766676666666666655544
No 36
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=58.83 E-value=32 Score=28.30 Aligned_cols=43 Identities=33% Similarity=0.524 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhcHHHhhhhHhhHHHhHHH
Q 013576 289 RQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYA 350 (440)
Q Consensus 289 ~~L~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (440)
+.|++++++|++++.-+|-. +|- -=.|-||-.++-|.-+++|.
T Consensus 35 q~LnAkv~qLe~dv~a~~~~---~qA----------------Ak~eaarAn~rldn~a~s~~ 77 (78)
T COG4238 35 QTLNAKVDQLENDVNAMRSD---VQA----------------AKDEAARANQRLDNQAQSYC 77 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHH----------------hHhHHHHHHHHHHHHHHHhc
Confidence 78899999999988776632 221 11367888999999998884
No 37
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=58.75 E-value=98 Score=27.56 Aligned_cols=58 Identities=26% Similarity=0.373 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhhHHH---hhcHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHHHHHHHHH
Q 013576 252 VWLKVELCSLLEDKRSA---VLRAEELETALMEMVKQDNR-----RQLSARIEQLEQEVAELQQSL 309 (440)
Q Consensus 252 ~~l~~~l~rLld~~~~~---~l~~~el~~~l~em~k~d~~-----~~L~~~~e~l~~~~~~~~~~~ 309 (440)
+-+..|+.+|+.+|... .-...+|...+.++-+.-.+ =+=++++|.|+..+.|||.+.
T Consensus 47 ~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 47 DELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 34566666666666333 33333333333333332222 122444555555555555444
No 38
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=58.62 E-value=28 Score=30.97 Aligned_cols=49 Identities=22% Similarity=0.301 Sum_probs=39.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Q 013576 282 MVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQ 330 (440)
Q Consensus 282 m~k~d~~~~L~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (440)
+-.++...-|..+++.|+..+..|.+.+..+++|=..+.+++.++.+++
T Consensus 90 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 138 (140)
T PRK03947 90 KDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEA 138 (140)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556678888888999999999999999999889999998887764
No 39
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=56.83 E-value=1.8e+02 Score=33.34 Aligned_cols=68 Identities=25% Similarity=0.361 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhcHHHhhh---hHhhHHHhHHHHHHHHHHHHHHHHHH
Q 013576 289 RQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRN---AEQDARAQRYAVNVLEEKYEKAMASV 365 (440)
Q Consensus 289 ~~L~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (440)
+.++.+..+||.|+..||.-|..|+||-..|-+-+ .+.|.+ .+.|+..=--|...||+|-...-.+|
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~----------~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sL 610 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESEL----------QELRKYEKESEKDTEVLMSALSAMQDKNQHLENSL 610 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 44777888888889999999988888865554332 333333 35678888888888888876555444
Q ss_pred H
Q 013576 366 A 366 (440)
Q Consensus 366 ~ 366 (440)
+
T Consensus 611 s 611 (697)
T PF09726_consen 611 S 611 (697)
T ss_pred h
Confidence 3
No 40
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=56.64 E-value=7.2 Score=33.11 Aligned_cols=29 Identities=10% Similarity=0.134 Sum_probs=24.4
Q ss_pred HHHHHHHhhhHHHhhcHHHHHHHHHHHhh
Q 013576 256 VELCSLLEDKRSAVLRAEELETALMEMVK 284 (440)
Q Consensus 256 ~~l~rLld~~~~~~l~~~el~~~l~em~k 284 (440)
.++++-||.|+|+.++|.||.+.++.++-
T Consensus 51 d~im~~LD~n~Dg~vdF~EF~~Lv~~l~~ 79 (91)
T cd05024 51 DKIMKDLDDCRDGKVGFQSFFSLIAGLLI 79 (91)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 48899999999999999999886665543
No 41
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=53.90 E-value=12 Score=28.27 Aligned_cols=50 Identities=10% Similarity=0.098 Sum_probs=33.1
Q ss_pred cCccCChhHhhccCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhcHHHHHHHH
Q 013576 223 KEPAANLDEMLSGLSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETAL 279 (440)
Q Consensus 223 ~d~~~~f~~~~~~L~~~~~~~~~~~~~~~~~l~~~l~rLld~~~~~~l~~~el~~~l 279 (440)
++.+ .|...+..+..... ++.+.-....+|+.+|.|++|.|+++||..++
T Consensus 17 i~~~-el~~~~~~~~~~~~------~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 17 ISKE-ELRRALKHLGRDMS------DEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp EEHH-HHHHHHHHTTSHST------HHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CCHH-HHHHHHHHhccccc------HHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4444 56666665543322 12222255678999999999999999998854
No 42
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=53.43 E-value=6.6 Score=23.23 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=22.0
Q ss_pred HHHHHHhhhHHHhhcHHHHHHHHHH
Q 013576 257 ELCSLLEDKRSAVLRAEELETALME 281 (440)
Q Consensus 257 ~l~rLld~~~~~~l~~~el~~~l~e 281 (440)
++|+.+|.|.++.+++.+|...+..
T Consensus 4 ~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 4 EAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 5899999999999999999987764
No 43
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=51.57 E-value=2.9e+02 Score=28.34 Aligned_cols=90 Identities=22% Similarity=0.360 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhhH-HHhhcHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhh
Q 013576 254 LKVELCSLLEDKR-SAVLRAEELETALMEMVKQDNR-RQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQR 331 (440)
Q Consensus 254 l~~~l~rLld~~~-~~~l~~~el~~~l~em~k~d~~-~~L~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (440)
|..++-+|-.... -+..+-.+|..+-.++...+.. +..+++++.|++++..++..+.+..++-..+ +..+.+-++
T Consensus 189 L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l---~~eI~e~~~ 265 (325)
T PF08317_consen 189 LEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQEL---LAEIAEAEK 265 (325)
T ss_pred HHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 4555544444333 3445556666665565555554 5566666677777777766666665554433 344555566
Q ss_pred hcHHHhhhhHhhHHH
Q 013576 332 ITEDARRNAEQDARA 346 (440)
Q Consensus 332 ~~~~~~~~~~~~~~~ 346 (440)
+-+..|.+...|...
T Consensus 266 ~~~~~r~~t~~Ev~~ 280 (325)
T PF08317_consen 266 IREECRGWTRSEVKR 280 (325)
T ss_pred HHHHhcCCCHHHHHH
Confidence 666666666555443
No 44
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=51.24 E-value=2.8e+02 Score=28.23 Aligned_cols=110 Identities=24% Similarity=0.362 Sum_probs=70.4
Q ss_pred HhhcHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhcHHHhhhhHhh
Q 013576 268 AVLRAEELETALMEMVKQDNR----RQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQD 343 (440)
Q Consensus 268 ~~l~~~el~~~l~em~k~d~~----~~L~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (440)
+.|+-..++..+..+.|+..- -.|..|+++|..=-+.|+-+|..|.+=-+-..|-+ . .-.---+
T Consensus 61 aeI~q~nlEielLkleKeTADltH~~~L~~K~~~Lq~m~shLe~VLk~K~~Lr~RLqkP~----~--------qe~LPVE 128 (277)
T PF15003_consen 61 AEIDQLNLEIELLKLEKETADLTHPDYLAEKCEALQSMNSHLEAVLKEKDRLRQRLQKPY----C--------QENLPVE 128 (277)
T ss_pred HHHHhhhHHHHHHHhhcchHhhhCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh----h--------hcCccch
Confidence 345555566666666665433 78889999999888899998888765433333222 1 1122235
Q ss_pred HHHhHHHHHHHH------HHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHhhhcccC
Q 013576 344 ARAQRYAVNVLE------EKYEKAM-----------------ASVAQMEKRAVMAESMLEATLQYESGQ 389 (440)
Q Consensus 344 ~~~~~~~~~~~~------~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (440)
|.-|||++++|. ++-++.+ .+|+.|.-.+.=-|...|+.+++..-|
T Consensus 129 A~yHr~vVeLL~laa~fi~~Le~~LetIrwip~~~~~~~~m~~aL~ki~~lvae~E~l~e~ilkwRe~~ 197 (277)
T PF15003_consen 129 AQYHRYVVELLELAASFIEKLEEHLETIRWIPNFDENPSNMDKALAKIDALVAECEELAEQILKWREQQ 197 (277)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999987 2333332 256666666666777888888776544
No 45
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.47 E-value=15 Score=35.02 Aligned_cols=30 Identities=47% Similarity=0.566 Sum_probs=24.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013576 278 ALMEMVKQDNRRQLSARIEQLEQEVAELQQSLAD 311 (440)
Q Consensus 278 ~l~em~k~d~~~~L~~~~e~l~~~~~~~~~~~~~ 311 (440)
..-++...| |.|+||+|||+|++||+-|++
T Consensus 181 ~a~a~~s~d----learv~aLe~eva~L~~rld~ 210 (215)
T COG3132 181 DAPAAASSD----LEARVEALEQEVAELRARLDS 210 (215)
T ss_pred cCcccccch----HHHHHHHHHHHHHHHHHHHHH
Confidence 334455566 789999999999999998875
No 46
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=49.14 E-value=40 Score=26.45 Aligned_cols=30 Identities=37% Similarity=0.553 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 013576 289 RQLSARIEQLEQEVAELQQSLADKREQESA 318 (440)
Q Consensus 289 ~~L~~~~e~l~~~~~~~~~~~~~~~~~~~~ 318 (440)
.+|.+++..|++|+.-++..+..|+-.-.|
T Consensus 24 ~EL~~RIa~L~aEI~R~~~~~~~K~a~r~A 53 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEAAIAKKSASRAA 53 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999877654
No 47
>PRK10884 SH3 domain-containing protein; Provisional
Probab=49.02 E-value=2e+02 Score=27.94 Aligned_cols=9 Identities=22% Similarity=0.158 Sum_probs=4.4
Q ss_pred ccCCCCCcc
Q 013576 234 SGLSVNSEL 242 (440)
Q Consensus 234 ~~L~~~~~~ 242 (440)
++-.+|...
T Consensus 74 ~G~~GWV~~ 82 (206)
T PRK10884 74 KGRTAWIPL 82 (206)
T ss_pred CCCEEeEEH
Confidence 345566433
No 48
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=47.59 E-value=3.2e+02 Score=27.77 Aligned_cols=96 Identities=26% Similarity=0.382 Sum_probs=52.6
Q ss_pred HhhhHHHhhcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHhhhhcHHHhhhh
Q 013576 262 LEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQE-SAMIQVLMKVEQEQRITEDARRNA 340 (440)
Q Consensus 262 ld~~~~~~l~~~el~~~l~em~k~d~~~~L~~~~e~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 340 (440)
+|.-|..+=..|..|..+.- .-|.++.|..++..|+.+ |.+... ..+=|-|+|.|+|--|.|
T Consensus 123 ~d~yR~~LK~IR~~E~sl~p--~R~~r~~l~d~I~kLk~k---------~P~s~kl~~LeqELvraEae~lvaE------ 185 (271)
T PF13805_consen 123 LDQYRIHLKSIRNREESLQP--SRDRRRKLQDEIAKLKYK---------DPQSPKLVVLEQELVRAEAENLVAE------ 185 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH----------TTTTTHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHhH--HHHHhHHHHHHHHHHHhc---------CCCChHHHHHHHHHHHHHHHhhHHH------
Confidence 45556666566666666554 345556777777666543 111111 111233555555555544
Q ss_pred HhhHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 013576 341 EQDARAQRYAVNVLEEKYEKAMASVAQM-EKRAVMAES 377 (440)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 377 (440)
|.--.+--.-+.|-|.-=+.++-++ ||-+++|+-
T Consensus 186 ---AqL~n~kR~~lKEa~~~~f~Al~E~aEK~~Ila~~ 220 (271)
T PF13805_consen 186 ---AQLSNIKRQKLKEAYSLKFDALIERAEKQAILAEY 220 (271)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455556777776555666554 677788775
No 49
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=47.06 E-value=2.2e+02 Score=29.31 Aligned_cols=34 Identities=18% Similarity=0.481 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 013576 290 QLSARIEQLEQEVAELQQSLADKREQESAMIQVL 323 (440)
Q Consensus 290 ~L~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (440)
+-+.+|+.|+.++...+..|..|+..-..|++++
T Consensus 12 et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i 45 (344)
T PF12777_consen 12 ETEEQVEEMQEELEEKQPELEEKQKEAEELLEEI 45 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777766555555544
No 50
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=47.03 E-value=13 Score=30.68 Aligned_cols=58 Identities=10% Similarity=0.055 Sum_probs=39.1
Q ss_pred CcCccCccCChhHhhccCCCC-C-cccchhhHHHHHHHHHHHHHHHhhhHHHhhcHHHHHHHHHHHhh
Q 013576 219 DLSYKEPAANLDEMLSGLSVN-S-ELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVK 284 (440)
Q Consensus 219 e~~r~d~~~~f~~~~~~L~~~-~-~~~~~~~~~~~~~l~~~l~rLld~~~~~~l~~~el~~~l~em~k 284 (440)
....++.. .|..++....|. . ...+ ++ --.++++.+|.|.+|.++|++|...++.+.+
T Consensus 23 ~~~~Is~~-El~~ll~~~~g~~~t~~~~---~~----~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~ 82 (88)
T cd05030 23 HPDTLYKK-EFKQLVEKELPNFLKKEKN---QK----AIDKIFEDLDTNQDGQLSFEEFLVLVIKVGV 82 (88)
T ss_pred CcccCCHH-HHHHHHHHHhhHhhccCCC---HH----HHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 34447776 788888633222 1 1111 11 2247999999999999999999998888765
No 51
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=46.81 E-value=2.2e+02 Score=29.99 Aligned_cols=81 Identities=17% Similarity=0.314 Sum_probs=65.7
Q ss_pred HHHHHHHHHhhhHHHhhcHHHHHHHHH----------------------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013576 254 LKVELCSLLEDKRSAVLRAEELETALM----------------------EMVKQDNRRQLSARIEQLEQEVAELQQSLAD 311 (440)
Q Consensus 254 l~~~l~rLld~~~~~~l~~~el~~~l~----------------------em~k~d~~~~L~~~~e~l~~~~~~~~~~~~~ 311 (440)
|-..+.+.+++=.+..-+-+.|+.|++ |.|++.....|..+|..|+.-+..|++.|..
T Consensus 263 Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~ 342 (384)
T PF03148_consen 263 LEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDE 342 (384)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777788887775 4566666788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcH
Q 013576 312 KREQESAMIQVLMKVEQEQRITE 334 (440)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~ 334 (440)
-+..-+.+....+++|.+-.+-.
T Consensus 343 a~~~l~~L~~~~~~Le~di~~K~ 365 (384)
T PF03148_consen 343 AEASLQKLERTRLRLEEDIAVKN 365 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998866543
No 52
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=45.76 E-value=1.7e+02 Score=30.22 Aligned_cols=69 Identities=25% Similarity=0.354 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHhhcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 013576 247 LQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQES 317 (440)
Q Consensus 247 ~~~~~~~l~~~l~rLld~~~~~~l~~~el~~~l~em~k~d~~~~L~~~~e~l~~~~~~~~~~~~~~~~~~~ 317 (440)
-+++|.-|-.++..|=.+-+.-..++++|-..|.++ .+++++|.+++-.|+.+-+|.-.+|.+-||+=+
T Consensus 232 QQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s--ke~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk 300 (306)
T PF04849_consen 232 QQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQAS--KESQRQLQAELQELQDKYAECMAMLHEAQEELK 300 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666667777777777766 677788888888888888888888888888744
No 53
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=45.67 E-value=92 Score=34.88 Aligned_cols=46 Identities=30% Similarity=0.501 Sum_probs=34.6
Q ss_pred HHHHHHHhhhHHHhhcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 013576 256 VELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKR 313 (440)
Q Consensus 256 ~~l~rLld~~~~~~l~~~el~~~l~em~k~d~~~~L~~~~e~l~~~~~~~~~~~~~~~ 313 (440)
.++||++. ++.++-.|++. -|.+|..+++++.++..+|+|.+-.||
T Consensus 82 ~e~~RI~~---sVs~EL~ele~---------krqel~seI~~~n~kiEelk~~i~~~q 127 (907)
T KOG2264|consen 82 REQKRILA---SVSLELTELEV---------KRQELNSEIEEINTKIEELKRLIPQKQ 127 (907)
T ss_pred HHHHHHHH---HHHHHHHHHHH---------HHHHHHhHHHHHHHHHHHHHHHHHHhH
Confidence 46778765 34444455543 468899999999999999999988776
No 54
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=45.58 E-value=14 Score=30.74 Aligned_cols=54 Identities=6% Similarity=-0.015 Sum_probs=38.1
Q ss_pred cCccCChhHhhccCCCCCc---ccchhhHHHHHHHHHHHHHHHhhhHHHhhcHHHHHHHHHHHhhh
Q 013576 223 KEPAANLDEMLSGLSVNSE---LEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQ 285 (440)
Q Consensus 223 ~d~~~~f~~~~~~L~~~~~---~~~~~~~~~~~~l~~~l~rLld~~~~~~l~~~el~~~l~em~k~ 285 (440)
+..+ +|+.+++.-.|.-- .++. --.++++-+|.|.||.++|+||...|+.++..
T Consensus 28 Ls~~-Elk~ll~~e~~~~~~~~~~~~--------~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~~ 84 (89)
T cd05023 28 LSKT-EFLSFMNTELASFTKNQKDPG--------VLDRMMKKLDLNSDGQLDFQEFLNLIGGLAVA 84 (89)
T ss_pred ECHH-HHHHHHHHhhhHhhcCCCCHH--------HHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHH
Confidence 5555 78888887655422 2222 12368889999999999999999877776543
No 55
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=45.50 E-value=15 Score=30.81 Aligned_cols=54 Identities=19% Similarity=0.144 Sum_probs=37.2
Q ss_pred cCccCChhHhhcc-CCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhcHHHHHHHHHHHhhhh
Q 013576 223 KEPAANLDEMLSG-LSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQD 286 (440)
Q Consensus 223 ~d~~~~f~~~~~~-L~~~~~~~~~~~~~~~~~l~~~l~rLld~~~~~~l~~~el~~~l~em~k~d 286 (440)
+... .|+.++.. |-.+.. +..+ -.+|++-+|.|.||.++|+||...|+-++..-
T Consensus 26 i~~~-ELk~ll~~elg~~ls-~~~~--------v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~~~ 80 (89)
T cd05022 26 LTAS-EFQELLTQQLPHLLK-DVEG--------LEEKMKNLDVNQDSKLSFEEFWELIGELAKAV 80 (89)
T ss_pred ECHH-HHHHHHHHHhhhhcc-CHHH--------HHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 5555 77777776 433211 1121 24788999999999999999999887776543
No 56
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=44.69 E-value=1.5e+02 Score=23.21 Aligned_cols=71 Identities=20% Similarity=0.278 Sum_probs=48.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHhhhHHHhhcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 013576 242 LEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKRE 314 (440)
Q Consensus 242 ~~~~~~~~~~~~l~~~l~rLld~~~~~~l~~~el~~~l~em~k~d~~~~L~~~~e~l~~~~~~~~~~~~~~~~ 314 (440)
.++.+++.+...++ .+..-+......+-...+....| .=.+.+....+..+++.|...|..|...+.+.+.
T Consensus 31 ~~~~~~~~~~~~~~-~~~~ei~~~~~~l~~l~~~~~~L-~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~ 101 (105)
T PF00435_consen 31 SDLEELEEQLKKHK-ELQEEIESRQERLESLNEQAQQL-IDSGPEDSDEIQEKLEELNQRWEALCELVEERRQ 101 (105)
T ss_dssp SSHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666644332 34445555666666666777777 4444666799999999999999999999887764
No 57
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=44.45 E-value=12 Score=27.39 Aligned_cols=25 Identities=8% Similarity=0.139 Sum_probs=22.7
Q ss_pred HHHHHHHhhhHHHhhcHHHHHHHHH
Q 013576 256 VELCSLLEDKRSAVLRAEELETALM 280 (440)
Q Consensus 256 ~~l~rLld~~~~~~l~~~el~~~l~ 280 (440)
..+++.+|.|++|.|+++||...|-
T Consensus 28 ~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 28 DRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp HHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred HHHHHhcccCCCCCCCHHHHHHHHH
Confidence 5899999999999999999998663
No 58
>PF07278 DUF1441: Protein of unknown function (DUF1441); InterPro: IPR009901 This entry is represented by Bacteriophage VT1-Sakai, H0025. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 160 residues in length. The function of this family is unknown.
Probab=44.35 E-value=1.1e+02 Score=28.54 Aligned_cols=41 Identities=24% Similarity=0.415 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHH-HhhhHHHhhcHHHHHHHHHHHhhhhHH
Q 013576 248 QEQVVWLKVELCSL-LEDKRSAVLRAEELETALMEMVKQDNR 288 (440)
Q Consensus 248 ~~~~~~l~~~l~rL-ld~~~~~~l~~~el~~~l~em~k~d~~ 288 (440)
.++-+|...|.-|+ +++..--++.+++....|++|+|.-.+
T Consensus 67 ~dRK~w~qsE~eRlk~e~e~g~Lipa~eV~~~~s~~~Kav~q 108 (152)
T PF07278_consen 67 KDRKAWWQSENERLKFEKETGQLIPAEEVRREMSEMAKAVVQ 108 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHH
Confidence 36779999999998 777788899999999999999998777
No 59
>smart00150 SPEC Spectrin repeats.
Probab=43.44 E-value=90 Score=24.52 Aligned_cols=52 Identities=23% Similarity=0.387 Sum_probs=36.6
Q ss_pred hhhHHHhhcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 013576 263 EDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQ 315 (440)
Q Consensus 263 d~~~~~~l~~~el~~~l~em~k~d~~~~L~~~~e~l~~~~~~~~~~~~~~~~~ 315 (440)
+...+.......+...|.... ......+..+++.|.+.|..|+..+.+++.+
T Consensus 48 ~~~~~~v~~~~~~~~~L~~~~-~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~ 99 (101)
T smart00150 48 EAHEERVEALNELGEQLIEEG-HPDAEEIEERLEELNERWEELKELAEERRQK 99 (101)
T ss_pred HHhHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555555555553 3345789999999999999999999988753
No 60
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=42.05 E-value=1.5e+02 Score=27.13 Aligned_cols=57 Identities=28% Similarity=0.419 Sum_probs=43.6
Q ss_pred HHHHHHhhhHHHhhcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 013576 257 ELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKR 313 (440)
Q Consensus 257 ~l~rLld~~~~~~l~~~el~~~l~em~k~d~~~~L~~~~e~l~~~~~~~~~~~~~~~ 313 (440)
++-.|-++..+---..+.+...|..+.+..-..+|..++++|++++..|..-|..-+
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555566678888899999999999999999999999988887776544
No 61
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=41.01 E-value=7.3e+02 Score=30.04 Aligned_cols=92 Identities=27% Similarity=0.342 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhHHHhhcHHHHHHHHHHHhhhhHHH------------HHHHHHHHHHHHHHHHHHHHhhHH
Q 013576 246 DLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRR------------QLSARIEQLEQEVAELQQSLADKR 313 (440)
Q Consensus 246 ~~~~~~~~l~~~l~rLld~~~~~~l~~~el~~~l~em~k~d~~~------------~L~~~~e~l~~~~~~~~~~~~~~~ 313 (440)
.+++++.-+..++-.+..+-.+.....+++...+.++-...-.. .+..+.+++...+..+.+.+.+..
T Consensus 671 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 750 (1163)
T COG1196 671 ELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELE 750 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777788888888888888888888887777765433221 122444455555555555555555
Q ss_pred HHHHHHHHHHHHHHHhhhhcHHHh
Q 013576 314 EQESAMIQVLMKVEQEQRITEDAR 337 (440)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~ 337 (440)
+...-.-..+-.++.+..-.++..
T Consensus 751 ~~~~~~~~~~~~~~~~l~~~~~~~ 774 (1163)
T COG1196 751 EELEELQERLEELEEELESLEEAL 774 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 545445555566666555554444
No 62
>PRK04863 mukB cell division protein MukB; Provisional
Probab=41.01 E-value=8.4e+02 Score=30.71 Aligned_cols=92 Identities=21% Similarity=0.248 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhcHHHhhhhH----hhHHHhHHHHHHHHHHHHHHHHH
Q 013576 289 RQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAE----QDARAQRYAVNVLEEKYEKAMAS 364 (440)
Q Consensus 289 ~~L~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 364 (440)
.++.++++.+++++.+++..+++.+.+-...=+-+...++...--+.|+-.-- -|...+. -.+-++++-++....
T Consensus 379 eeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~-~LenF~aklee~e~q 457 (1486)
T PRK04863 379 EENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAED-WLEEFQAKEQEATEE 457 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHHHHHHHHHH
Confidence 44555666666666666666665444333333333344444333333333221 0111111 122234455556666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013576 365 VAQMEKRAVMAESMLEA 381 (440)
Q Consensus 365 ~~~~~~~~~~~~~~~~~ 381 (440)
+..+|.+..+++.-++.
T Consensus 458 L~elE~kL~~lea~leq 474 (1486)
T PRK04863 458 LLSLEQKLSVAQAAHSQ 474 (1486)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666655543
No 63
>PF11616 EZH2_WD-Binding: WD repeat binding protein EZH2; InterPro: IPR021654 This family of proteins represents Enhancer of zest homologue 2, (EZH2) a 30 residue peptide which binds to a WD-repeat domain of EED by residues 39-68. EED is a component of PRC2 complex which is involved in gene expression []. This interaction is required for the HMTase activity of PCR2 []. ; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 2QXV_B.
Probab=40.52 E-value=42 Score=22.89 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 013576 286 DNRRQLSARIEQLEQEVAELQ 306 (440)
Q Consensus 286 d~~~~L~~~~e~l~~~~~~~~ 306 (440)
.|++++.++-+-|-++|+.||
T Consensus 6 sNr~Ki~e~t~iLN~eWk~lR 26 (30)
T PF11616_consen 6 SNRQKIQERTDILNEEWKKLR 26 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHH--
T ss_pred hhHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999987
No 64
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=39.66 E-value=6.6e+02 Score=30.87 Aligned_cols=72 Identities=26% Similarity=0.302 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHhhhhcHHHhhhhHhhHHHhHHHHHHHHHHHHHHH
Q 013576 284 KQDNRRQLSARIEQLEQEVAELQQS-LADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAM 362 (440)
Q Consensus 284 k~d~~~~L~~~~e~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (440)
+.+.+++++..-..++|+.++-++. |.++ | |.+-.+++.-.=-.+||..||.++..----.+.|.--|-.+-
T Consensus 669 e~~~e~~lk~~q~~~eq~~~E~~~~~L~~~---e----~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~ 741 (1317)
T KOG0612|consen 669 EIKLERKLKMLQNELEQENAEHHRLRLQDK---E----AQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQ 741 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---H----HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 3445556666666666666665555 3333 2 222233333333346887777766544444445555554333
No 65
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=39.36 E-value=3.6e+02 Score=31.13 Aligned_cols=80 Identities=26% Similarity=0.282 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHhhcHHHHHHHHHHH------hhhhHH-------HHHHHHHHHHHHHHHHHHHHHhhHH
Q 013576 247 LQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEM------VKQDNR-------RQLSARIEQLEQEVAELQQSLADKR 313 (440)
Q Consensus 247 ~~~~~~~l~~~l~rLld~~~~~~l~~~el~~~l~em------~k~d~~-------~~L~~~~e~l~~~~~~~~~~~~~~~ 313 (440)
++|.|.=+..++-|-=|.+......+.+|+...... .++|+. .++.++++.|-|.|.|||++|.-+
T Consensus 521 ~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~- 599 (961)
T KOG4673|consen 521 LQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKK- 599 (961)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 344455556666666666666666666666543322 233442 478899999999999999999854
Q ss_pred HHHHHHHHHHHHHH
Q 013576 314 EQESAMIQVLMKVE 327 (440)
Q Consensus 314 ~~~~~~~~~~~~~~ 327 (440)
||-.|-=--.||=|
T Consensus 600 Eq~aarrEd~~R~E 613 (961)
T KOG4673|consen 600 EQQAARREDMFRGE 613 (961)
T ss_pred HHHHHHHHHHHHHH
Confidence 56555444445544
No 66
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=38.70 E-value=3.9e+02 Score=26.16 Aligned_cols=72 Identities=18% Similarity=0.294 Sum_probs=50.9
Q ss_pred HHHHHHHhhhHHHhhcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 013576 256 VELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQE 329 (440)
Q Consensus 256 ~~l~rLld~~~~~~l~~~el~~~l~em~k~d~~~~L~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (440)
.+..++=++...-.-+.+.+...+.-+.. -.+++...+.++++++.+|.+-+++-.+-+..+.-+|.+|-.+
T Consensus 42 ~~id~~~~e~~~L~~e~~~l~~e~e~L~~--~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~ 113 (251)
T PF11932_consen 42 KRIDQWDDEKQELLAEYRQLEREIENLEV--YNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDE 113 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666665555544 3588889999999999999999988887777766666665443
No 67
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=38.50 E-value=78 Score=32.37 Aligned_cols=51 Identities=25% Similarity=0.356 Sum_probs=36.4
Q ss_pred hhhHHHhhcHH-----HHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHhhHH
Q 013576 263 EDKRSAVLRAE-----ELETALMEMVKQDNR-RQLSARIEQLEQEVAELQQSLADKR 313 (440)
Q Consensus 263 d~~~~~~l~~~-----el~~~l~em~k~d~~-~~L~~~~e~l~~~~~~~~~~~~~~~ 313 (440)
++|..|-.|-| |.+.+++++..-..| ++|+.++..||.|+..|||++-.++
T Consensus 233 ~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 233 QQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555544 566666666544444 9999999999999999999987654
No 68
>PHA02562 46 endonuclease subunit; Provisional
Probab=37.26 E-value=5.6e+02 Score=27.62 Aligned_cols=12 Identities=50% Similarity=0.999 Sum_probs=7.5
Q ss_pred ccccc-ccccccc
Q 013576 410 RRIGL-FGLAWRD 421 (440)
Q Consensus 410 ~~~~~-~~~~~~~ 421 (440)
+|++| ..|.||+
T Consensus 475 ~r~~la~~l~~~~ 487 (562)
T PHA02562 475 ARIDLALLFTWRD 487 (562)
T ss_pred HHHHHHHHHHHHH
Confidence 56666 6666765
No 69
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=36.48 E-value=2.1e+02 Score=25.16 Aligned_cols=19 Identities=53% Similarity=0.702 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013576 289 RQLSARIEQLEQEVAELQQ 307 (440)
Q Consensus 289 ~~L~~~~e~l~~~~~~~~~ 307 (440)
..|+++|.+|++++++|+.
T Consensus 99 ~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 99 EALSAKIEQLAVQVEELRR 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 6788889999988888764
No 70
>PRK11239 hypothetical protein; Provisional
Probab=36.02 E-value=51 Score=32.26 Aligned_cols=27 Identities=48% Similarity=0.562 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 013576 289 RQLSARIEQLEQEVAELQQSLADKREQ 315 (440)
Q Consensus 289 ~~L~~~~e~l~~~~~~~~~~~~~~~~~ 315 (440)
..|.++|.+||+||++||..+..-..|
T Consensus 186 ~~Le~rv~~Le~eva~L~~~l~~l~~~ 212 (215)
T PRK11239 186 GDLQARVEALEIEVAELKQRLDSLLAH 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 558999999999999999998876554
No 71
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=35.41 E-value=65 Score=31.02 Aligned_cols=36 Identities=31% Similarity=0.477 Sum_probs=28.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 013576 279 LMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESA 318 (440)
Q Consensus 279 l~em~k~d~~~~L~~~~e~l~~~~~~~~~~~~~~~~~~~~ 318 (440)
|.+-+|+ +|+++.-++|.|++.|||.|+-|+.--.-
T Consensus 41 LSe~Eke----elr~EL~kvEeEI~TLrqVLaAKerH~~E 76 (208)
T KOG4010|consen 41 LSEEEKE----ELRTELAKVEEEIVTLRQVLAAKERHAAE 76 (208)
T ss_pred hcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554 77788889999999999999998765443
No 72
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=34.97 E-value=1e+02 Score=24.73 Aligned_cols=35 Identities=14% Similarity=0.211 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHhh--hHHHhhcHHHHHHHHHH
Q 013576 246 DLQEQVVWLKVELCSLLED--KRSAVLRAEELETALME 281 (440)
Q Consensus 246 ~~~~~~~~l~~~l~rLld~--~~~~~l~~~el~~~l~e 281 (440)
+++++..-++ +.|+.+|. |.+|.|...+|...+..
T Consensus 2 ~~~~~~~~l~-~~F~~~D~~~~~~G~Is~~el~~~l~~ 38 (88)
T cd00213 2 ELEKAIETII-DVFHKYSGKEGDKDTLSKKELKELLET 38 (88)
T ss_pred hHHHHHHHHH-HHHHHHhhccCCCCcCcHHHHHHHHHH
Confidence 4667755443 58999999 89999999999998865
No 73
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=34.51 E-value=2.4e+02 Score=22.61 Aligned_cols=58 Identities=24% Similarity=0.343 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHhhcHHHH-------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 013576 247 LQEQVVWLKVELCSLLEDKRSAVLRAEEL-------ETALMEMVKQDNRRQLSARIEQLEQEVAELQ 306 (440)
Q Consensus 247 ~~~~~~~l~~~l~rLld~~~~~~l~~~el-------~~~l~em~k~d~~~~L~~~~e~l~~~~~~~~ 306 (440)
|+..|..|+.++.++=-++....+..+.| +..|+. .-....+|++++|.|+++..+.|
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~--a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGD--AYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhh
Confidence 55666777777777766666555554444 333443 22333567777777777755443
No 74
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=34.28 E-value=28 Score=32.66 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=31.7
Q ss_pred HHHHHHhhhHHHhhcHHHHHHHHHHHhhhhHHHHHHHHH
Q 013576 257 ELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARI 295 (440)
Q Consensus 257 ~l~rLld~~~~~~l~~~el~~~l~em~k~d~~~~L~~~~ 295 (440)
|-|.+||+|+||.|.-++|...++.+.+--...+|-+=.
T Consensus 36 EAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~ 74 (171)
T KOG0031|consen 36 EAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMM 74 (171)
T ss_pred HHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 679999999999999999999888888876666665543
No 75
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=33.70 E-value=1.1e+02 Score=28.66 Aligned_cols=37 Identities=30% Similarity=0.493 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 013576 289 RQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMK 325 (440)
Q Consensus 289 ~~L~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (440)
++|..+++.|+.|...|.+-++--+|-=.+|+++|=|
T Consensus 114 ~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 114 ESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR 150 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999888888999998755
No 76
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=33.16 E-value=36 Score=30.47 Aligned_cols=60 Identities=13% Similarity=0.155 Sum_probs=41.2
Q ss_pred cCccCChhHhhccCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhcHHHHHHHHHHHhhhhHH
Q 013576 223 KEPAANLDEMLSGLSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNR 288 (440)
Q Consensus 223 ~d~~~~f~~~~~~L~~~~~~~~~~~~~~~~~l~~~l~rLld~~~~~~l~~~el~~~l~em~k~d~~ 288 (440)
||.+ .|..+.............. .+ --.+.||++|.|++|.|++.||...|..+......
T Consensus 61 I~~~-eF~~l~~~~~~~~~~~~~~-~~----el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~ 120 (151)
T KOG0027|consen 61 IDFE-EFLDLMEKLGEEKTDEEAS-SE----ELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTD 120 (151)
T ss_pred EcHH-HHHHHHHhhhccccccccc-HH----HHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCH
Confidence 7776 7777766443332221100 11 12478999999999999999999999988877663
No 77
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=32.69 E-value=32 Score=29.71 Aligned_cols=55 Identities=15% Similarity=0.240 Sum_probs=35.8
Q ss_pred CChhHhhccCCCCCcc-cchhhHHHHHHH---------HHHHHHHHhhhHHHhhcHHHHHHHHHHHhh
Q 013576 227 ANLDEMLSGLSVNSEL-EGRDLQEQVVWL---------KVELCSLLEDKRSAVLRAEELETALMEMVK 284 (440)
Q Consensus 227 ~~f~~~~~~L~~~~~~-~~~~~~~~~~~l---------~~~l~rLld~~~~~~l~~~el~~~l~em~k 284 (440)
..|+.+|..|.+.... +..+. +..| =..+..|-|.|.+|.++++||+.||--+..
T Consensus 10 ~~y~~~F~~l~~~~g~isg~~a---~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~ 74 (104)
T PF12763_consen 10 QKYDQIFQSLDPQDGKISGDQA---REFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINR 74 (104)
T ss_dssp HHHHHHHHCTSSSTTEEEHHHH---HHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCeEeHHHH---HHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHH
Confidence 4788888888875211 11110 0111 135678999999999999999999876643
No 78
>PRK11637 AmiB activator; Provisional
Probab=32.51 E-value=6.2e+02 Score=26.73 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Q 013576 289 RQLSARIEQLEQEVAELQQSLADK 312 (440)
Q Consensus 289 ~~L~~~~e~l~~~~~~~~~~~~~~ 312 (440)
++|.++...|+.+..++...+.+.
T Consensus 180 ~~L~~~k~~le~~~~~l~~~~~e~ 203 (428)
T PRK11637 180 EELAAQKAELEEKQSQQKTLLYEQ 203 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 79
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=31.81 E-value=4.1e+02 Score=29.16 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhhHHHhhcHHHHHH
Q 013576 245 RDLQEQVVWLKVELCSLLEDKRSAVLRAEELET 277 (440)
Q Consensus 245 ~~~~~~~~~l~~~l~rLld~~~~~~l~~~el~~ 277 (440)
+.|=.++.-++.++-.|+.+|+.-.-+++.|-.
T Consensus 62 rTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 62 RTLVAEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677888999999999988888887744
No 80
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=31.38 E-value=74 Score=26.31 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHh-hhHHH-hhcHHHHHHHHHH
Q 013576 247 LQEQVVWLKVELCSLLE-DKRSA-VLRAEELETALME 281 (440)
Q Consensus 247 ~~~~~~~l~~~l~rLld-~~~~~-~l~~~el~~~l~e 281 (440)
||.-+.-| .+.|+.+| ++++| .|...+|...|..
T Consensus 3 le~~~~~l-~~aF~~fD~~dgdG~~I~~~eL~~ll~~ 38 (88)
T cd05027 3 LEKAMVAL-IDVFHQYSGREGDKHKLKKSELKELINN 38 (88)
T ss_pred HHHHHHHH-HHHHHHhcccCCCcCEECHHHHHHHHHH
Confidence 44444434 37899998 79999 5999999998876
No 81
>PTZ00183 centrin; Provisional
Probab=30.87 E-value=65 Score=27.96 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhcHHHHHHHHHHHh
Q 013576 249 EQVVWLKVELCSLLEDKRSAVLRAEELETALMEMV 283 (440)
Q Consensus 249 ~~~~~l~~~l~rLld~~~~~~l~~~el~~~l~em~ 283 (440)
+++.++ ...|+.+|.+++|.++.++|..+|..+.
T Consensus 14 ~~~~~~-~~~F~~~D~~~~G~i~~~e~~~~l~~~g 47 (158)
T PTZ00183 14 DQKKEI-REAFDLFDTDGSGTIDPKELKVAMRSLG 47 (158)
T ss_pred HHHHHH-HHHHHHhCCCCCCcccHHHHHHHHHHhC
Confidence 334445 4568888888899999999888887664
No 82
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=30.58 E-value=33 Score=25.44 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=25.6
Q ss_pred HHHHHHHhhhHHHhhcHHHHHHHHHHHhh
Q 013576 256 VELCSLLEDKRSAVLRAEELETALMEMVK 284 (440)
Q Consensus 256 ~~l~rLld~~~~~~l~~~el~~~l~em~k 284 (440)
.++++.++.+.++.+++++|...+..+.-
T Consensus 36 ~~i~~~~d~~~~g~i~~~ef~~~~~~~~~ 64 (67)
T cd00052 36 AQIWDLADTDKDGKLDKEEFAIAMHLIAL 64 (67)
T ss_pred HHHHHHhcCCCCCcCCHHHHHHHHHHHHH
Confidence 57899999999999999999998877653
No 83
>PLN02964 phosphatidylserine decarboxylase
Probab=30.19 E-value=47 Score=37.58 Aligned_cols=65 Identities=8% Similarity=0.054 Sum_probs=44.5
Q ss_pred ChhHhhccCCCCCcc-------------cchhhHHHHHHHHHHHHHHHhhhHHHhhcHHHHHHHHHHHhhhhHHHHHHHH
Q 013576 228 NLDEMLSGLSVNSEL-------------EGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSAR 294 (440)
Q Consensus 228 ~f~~~~~~L~~~~~~-------------~~~~~~~~~~~l~~~l~rLld~~~~~~l~~~el~~~l~em~k~d~~~~L~~~ 294 (440)
.+.+.|..+.+++++ .+.+.+.. ...++|+.+|.|.+|.++++||...|..+...+-.++|..=
T Consensus 144 elkeaF~lfD~dgdG~iLg~ilrslG~~~pte~e~~---fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~ea 220 (644)
T PLN02964 144 SACESFDLLDPSSSNKVVGSIFVSCSIEDPVETERS---FARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEEL 220 (644)
T ss_pred HHHHHHHHHCCCCCCcCHHHHHHHhCCCCCCHHHHH---HHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHH
Confidence 566667777777543 34322221 45789999999999999999999999887654544444443
Q ss_pred H
Q 013576 295 I 295 (440)
Q Consensus 295 ~ 295 (440)
.
T Consensus 221 F 221 (644)
T PLN02964 221 F 221 (644)
T ss_pred H
Confidence 3
No 84
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=29.86 E-value=9.1e+02 Score=27.80 Aligned_cols=59 Identities=22% Similarity=0.254 Sum_probs=42.0
Q ss_pred HHHHHHHHhhhhcHHHhhhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013576 321 QVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMASVAQMEKRAVMAESML 379 (440)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (440)
.-+-++..|-|..||.-+.+|.+...-|.-...-+.--|..|.+|+.|.-+...-|.-|
T Consensus 552 ~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sL 610 (697)
T PF09726_consen 552 SELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSL 610 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 34667778889999999999999854443311123356788999999988887655544
No 85
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=29.39 E-value=3.5e+02 Score=22.80 Aligned_cols=82 Identities=20% Similarity=0.227 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhcHHHhhh-hHhhHH---HhHHHHHHHHHHHHHHHHHHH
Q 013576 291 LSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRN-AEQDAR---AQRYAVNVLEEKYEKAMASVA 366 (440)
Q Consensus 291 L~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 366 (440)
|..++..+++.|.+++..+..|.-+-.+|=|.++|++.|--= +|-..| |+++.- ...-..+.+-.|--+.+..|.
T Consensus 1 L~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~k-adqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~ 79 (96)
T PF08647_consen 1 LQTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAK-ADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLK 79 (96)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345788999999999999999999999999999999887322 222222 111111 111233444455556666666
Q ss_pred HHHHHHH
Q 013576 367 QMEKRAV 373 (440)
Q Consensus 367 ~~~~~~~ 373 (440)
++|+-.+
T Consensus 80 ~~E~~~~ 86 (96)
T PF08647_consen 80 ETEKEFV 86 (96)
T ss_pred HHHHHHH
Confidence 6665443
No 86
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.29 E-value=2.4e+02 Score=29.67 Aligned_cols=29 Identities=14% Similarity=0.259 Sum_probs=16.4
Q ss_pred CcccCCcc----hHhhhhhhccChhhhhhhccC
Q 013576 179 RVWKDPNG----LATKLYSFKHDPELLIEENKG 207 (440)
Q Consensus 179 ~~~k~~~~----l~~~Ly~~~~d~~~l~~~~~~ 207 (440)
+.|.-... +...|...|+++.+..+...+
T Consensus 115 h~W~~pssdLv~Liq~l~a~f~~~pP~ys~~~~ 147 (365)
T KOG2391|consen 115 HNWDPPSSDLVGLIQELIAAFSEDPPVYSRSLP 147 (365)
T ss_pred ccCCCccchHHHHHHHHHHHhcCCCccccCCCC
Confidence 56775433 345566667776666554433
No 87
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=29.25 E-value=8.5e+02 Score=27.28 Aligned_cols=171 Identities=19% Similarity=0.243 Sum_probs=85.8
Q ss_pred HHHHhhhHHHhhcHHHHHHHHHHHhhhhHH----------------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 013576 259 CSLLEDKRSAVLRAEELETALMEMVKQDNR----------------RQLSARIEQLEQEVAELQQSLADKREQESAMIQV 322 (440)
Q Consensus 259 ~rLld~~~~~~l~~~el~~~l~em~k~d~~----------------~~L~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~ 322 (440)
.|.|-+-..+-+.+.++-..|+++.-+.=. +.-+.+|+.|+.++..+-+.|..++.+-. -||+
T Consensus 321 Drt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~q-kL~~ 399 (546)
T PF07888_consen 321 DRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQ-KLEK 399 (546)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 455666666666777777666665432211 11234566677766666666655443322 3444
Q ss_pred HHHHHHhhh---hcHHHhhhhHhhHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhcccCcccCCC
Q 013576 323 LMKVEQEQR---ITEDARRNAEQDARAQRYAV--NVLEEKYEKAMASVAQMEKRAVMA--ESMLEATLQYESGQAKAVSS 395 (440)
Q Consensus 323 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 395 (440)
=+-=|++.. |.|--|...|--++.+.-.. +-|++.-.+.+.-+-++|.|.-|. +.--||.+=.+.--.-+.|+
T Consensus 400 ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (546)
T PF07888_consen 400 QLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADEKWKEAAALTEDATAASPPS 479 (546)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccCccccccCCC
Confidence 333344433 44555555554443322211 124444556777778888887664 22223333111111111222
Q ss_pred cccccCCCCCCCCC----ccccccccccccccCCCCCCc
Q 013576 396 PRAVHNQSSVDSPK----RRIGLFGLAWRDRNKGKPSNL 430 (440)
Q Consensus 396 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 430 (440)
+-++..+|--++|. +++|..||.=.+-+-..|.+.
T Consensus 480 ~~~~~s~s~de~p~~~~~~~l~~~~l~~~~~~~~~p~~p 518 (546)
T PF07888_consen 480 CPADLSDSEDESPEDEQPQPLGHYSLCEQGQPGSLPPSP 518 (546)
T ss_pred CCcCCCCcccCCccccccCCCCCcCcccCCCCCCCCCCC
Confidence 21222344444554 889999987666555444443
No 88
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=28.99 E-value=3.3e+02 Score=22.39 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHH
Q 013576 289 RQLSARIEQLEQEVAELQQSLADKRE 314 (440)
Q Consensus 289 ~~L~~~~e~l~~~~~~~~~~~~~~~~ 314 (440)
++--+++++|++++...+..|.+-++
T Consensus 55 eeq~~~i~~Le~~i~~k~~~L~~~~~ 80 (83)
T PF07544_consen 55 EEQEEEIEELEEQIRKKREVLQKFKE 80 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666666666665544
No 89
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=28.94 E-value=2.6e+02 Score=25.42 Aligned_cols=67 Identities=24% Similarity=0.385 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHhhcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 013576 247 LQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKV 326 (440)
Q Consensus 247 ~~~~~~~l~~~l~rLld~~~~~~l~~~el~~~l~em~k~d~~~~L~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (440)
||.|+.||+..+-++=--..|.+-..+-++. | --+.|..-+.+||.+-..|...|.|.. +|+
T Consensus 20 Lekqi~~l~~kiek~r~n~~drl~siR~ye~----M----s~~~l~~llkqLEkeK~~Le~qlk~~e----------~rL 81 (129)
T PF15372_consen 20 LEKQIIILREKIEKIRGNPSDRLSSIRRYEQ----M----SVESLNQLLKQLEKEKRSLENQLKDYE----------WRL 81 (129)
T ss_pred HHHHHHHHHHHHHHHhCCCccccHHHHHHhh----c----cHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH
Confidence 6778888888887776555555554444333 2 116677778888888877777777653 688
Q ss_pred HHhhh
Q 013576 327 EQEQR 331 (440)
Q Consensus 327 ~~~~~ 331 (440)
|||-|
T Consensus 82 eQEsK 86 (129)
T PF15372_consen 82 EQESK 86 (129)
T ss_pred HHHHH
Confidence 88865
No 90
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=28.93 E-value=4.9e+02 Score=28.31 Aligned_cols=65 Identities=37% Similarity=0.359 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhhHHHhhcHHHHHH----------HHHHHhhhhHHHHHHHHHHHHHHHHHHHH------HHHhhHHHH
Q 013576 252 VWLKVELCSLLEDKRSAVLRAEELET----------ALMEMVKQDNRRQLSARIEQLEQEVAELQ------QSLADKREQ 315 (440)
Q Consensus 252 ~~l~~~l~rLld~~~~~~l~~~el~~----------~l~em~k~d~~~~L~~~~e~l~~~~~~~~------~~~~~~~~~ 315 (440)
..|-.+.+-|=+.-++.-++++|... +.++=++..-.+.+..++-+|+-+..+|| +++.||++-
T Consensus 253 lqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklae 332 (502)
T KOG0982|consen 253 LQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAE 332 (502)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44666777777778888888877642 34444555556888888888888888888 455566554
Q ss_pred H
Q 013576 316 E 316 (440)
Q Consensus 316 ~ 316 (440)
|
T Consensus 333 e 333 (502)
T KOG0982|consen 333 E 333 (502)
T ss_pred h
Confidence 4
No 91
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=28.85 E-value=40 Score=27.94 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=35.8
Q ss_pred cCccCChhHhhccCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhcHHHHHHHHHHHhh
Q 013576 223 KEPAANLDEMLSGLSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVK 284 (440)
Q Consensus 223 ~d~~~~f~~~~~~L~~~~~~~~~~~~~~~~~l~~~l~rLld~~~~~~l~~~el~~~l~em~k 284 (440)
++.+ .|+.++....+.++.-+. +.| .++++-+|.|.+|.+++.||...|+.+..
T Consensus 29 Is~~-EL~~~l~~~~~lg~k~t~---~ev----~~m~~~~D~d~dG~Idf~EFv~lm~~l~~ 82 (88)
T cd05029 29 LSKK-ELKELIQKELTIGSKLQD---AEI----AKLMEDLDRNKDQEVNFQEYVTFLGALAL 82 (88)
T ss_pred ECHH-HHHHHHHHHHhcCCCCCH---HHH----HHHHHHhcCCCCCCCcHHHHHHHHHHHHH
Confidence 5665 788877532222332221 122 36888999999999999999887776654
No 92
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=28.67 E-value=1e+03 Score=28.13 Aligned_cols=33 Identities=18% Similarity=0.432 Sum_probs=17.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 013576 283 VKQDNRRQLSARIEQLEQEVAELQQSLADKREQ 315 (440)
Q Consensus 283 ~k~d~~~~L~~~~e~l~~~~~~~~~~~~~~~~~ 315 (440)
++++....+-++.-+-+.++..-|+-|.+++.+
T Consensus 762 vk~~rqs~~~e~~~~~ea~leaer~rl~erk~~ 794 (988)
T KOG2072|consen 762 VKGERQSEYEEKLKQFEARLEAERNRLAERKRA 794 (988)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 444555555555555555555555555555544
No 93
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=28.52 E-value=45 Score=31.83 Aligned_cols=54 Identities=11% Similarity=0.036 Sum_probs=43.7
Q ss_pred cCccCChhHhhccCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhcHHHHHHHHH
Q 013576 223 KEPAANLDEMLSGLSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALM 280 (440)
Q Consensus 223 ~d~~~~f~~~~~~L~~~~~~~~~~~~~~~~~l~~~l~rLld~~~~~~l~~~el~~~l~ 280 (440)
|+.+ +|..+...+.+.++.. .++|+.-+...++.=.|.++||.|.++|++.++.
T Consensus 121 I~re-el~~iv~~~~~~~~~~---~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~ 174 (187)
T KOG0034|consen 121 ISRE-ELKQILRMMVGENDDM---SDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVE 174 (187)
T ss_pred CcHH-HHHHHHHHHHccCCcc---hHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 6666 7888888887766665 4566666899999999999999999999998653
No 94
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=28.27 E-value=1.2e+03 Score=28.70 Aligned_cols=60 Identities=27% Similarity=0.432 Sum_probs=36.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhHHHhhcHHHHHHHHHHHhhhhHH------HHHHHHHHHHHHHHHHH
Q 013576 245 RDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNR------RQLSARIEQLEQEVAEL 305 (440)
Q Consensus 245 ~~~~~~~~~l~~~l~rLld~~~~~~l~~~el~~~l~em~k~d~~------~~L~~~~e~l~~~~~~~ 305 (440)
.++++||+-++.++..+=++... --+-+++-.-+++|....++ +++..+++.|+++++.+
T Consensus 861 ~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~ 926 (1293)
T KOG0996|consen 861 KELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKL 926 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 56677777777777766533222 35556777777777766666 44555555555554443
No 95
>PRK15396 murein lipoprotein; Provisional
Probab=28.04 E-value=3.5e+02 Score=22.40 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=21.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 013576 279 LMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKR 313 (440)
Q Consensus 279 l~em~k~d~~~~L~~~~e~l~~~~~~~~~~~~~~~ 313 (440)
|+.+....--.+|+.+|.+|..++..+++..++-+
T Consensus 18 LaGCAs~~kvd~LssqV~~L~~kvdql~~dv~~~~ 52 (78)
T PRK15396 18 LAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMR 52 (78)
T ss_pred HHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554446777777777777766666555443
No 96
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=27.92 E-value=1.6e+02 Score=24.97 Aligned_cols=73 Identities=21% Similarity=0.345 Sum_probs=47.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhhHHHhhcHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 013576 245 RDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALME---MVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQ 321 (440)
Q Consensus 245 ~~~~~~~~~l~~~l~rLld~~~~~~l~~~el~~~l~e---m~k~d~~~~L~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~ 321 (440)
.+++..|+=++.+|+-+-..+..--+ .+|-- .--+..-++|..++.+|.+++..|+.-|+-..+...-+|.
T Consensus 11 ~ev~~~ve~vA~eLh~~YssKHE~KV------~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ 84 (87)
T PF12709_consen 11 KEVEKAVEKVARELHALYSSKHETKV------KALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQELLK 84 (87)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHH------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777666554332 11210 1112223788889999999999999988887777766665
Q ss_pred HH
Q 013576 322 VL 323 (440)
Q Consensus 322 ~~ 323 (440)
+|
T Consensus 85 ll 86 (87)
T PF12709_consen 85 LL 86 (87)
T ss_pred hh
Confidence 44
No 97
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=27.75 E-value=9.4e+02 Score=27.32 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 013576 363 ASVAQMEKRAVMAESMLEATL 383 (440)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~ 383 (440)
.-+.+++..+-.++.+.+..+
T Consensus 376 ~e~~~L~Re~~~~~~~Y~~ll 396 (754)
T TIGR01005 376 VDLDALQRDAAAKRQLYESYL 396 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555433
No 98
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=27.63 E-value=4.7e+02 Score=24.41 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 013576 291 LSARIEQLEQEVAELQQSLAD 311 (440)
Q Consensus 291 L~~~~e~l~~~~~~~~~~~~~ 311 (440)
.+++...++.|+.+|++-|+.
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEK 172 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHH
Confidence 334444445555555554444
No 99
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=27.43 E-value=9.2e+02 Score=27.07 Aligned_cols=72 Identities=11% Similarity=0.167 Sum_probs=38.5
Q ss_pred HHHHHHHhhhHHHhhcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 013576 256 VELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVE 327 (440)
Q Consensus 256 ~~l~rLld~~~~~~l~~~el~~~l~em~k~d~~~~L~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (440)
.++..+.++-.....+-.++...|........-.+|..+.+.++.++.+++..+...+++-...-.-+-+++
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 462 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALR 462 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555444333333666666777777777776666665555544444433333
No 100
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=27.06 E-value=41 Score=27.91 Aligned_cols=54 Identities=11% Similarity=0.101 Sum_probs=34.4
Q ss_pred ccCccCChhHhhccCCCCC-cccchhhHHHHHHHHHHHHHHHhhhHHHhhcHHHHHHHHHHH
Q 013576 222 YKEPAANLDEMLSGLSVNS-ELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEM 282 (440)
Q Consensus 222 r~d~~~~f~~~~~~L~~~~-~~~~~~~~~~~~~l~~~l~rLld~~~~~~l~~~el~~~l~em 282 (440)
+|..+ +|+.++....+.. ..+.. ++.| .++++-+|.|.+|.++|+||...|..+
T Consensus 28 ~Is~~-EL~~ll~~~~~~~~~~~~~--~~~v----~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 28 KLSKG-ELKELLQRELTDFLSSQKD--PMLV----DKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred EECHH-HHHHHHHHHhHHhcccccC--HHHH----HHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 35665 7788876533221 11111 1122 368899999999999999998866554
No 101
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=26.63 E-value=43 Score=27.73 Aligned_cols=28 Identities=7% Similarity=0.051 Sum_probs=23.6
Q ss_pred HHHHHHHhhhHHHhhcHHHHHHHHHHHh
Q 013576 256 VELCSLLEDKRSAVLRAEELETALMEMV 283 (440)
Q Consensus 256 ~~l~rLld~~~~~~l~~~el~~~l~em~ 283 (440)
.++++-+|.|++|.++|++|...+..++
T Consensus 54 ~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 54 DKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 4788899999999999999988766553
No 102
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=26.59 E-value=1.3e+03 Score=28.47 Aligned_cols=96 Identities=21% Similarity=0.294 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHHHHHhhhhcHHHhhhhHhhHHHhHHHHHHHHHHHHHHHHH
Q 013576 289 RQLSARIEQLEQEVAELQQSLADKREQ----ESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMAS 364 (440)
Q Consensus 289 ~~L~~~~e~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (440)
.+|.+++|..+.+.+++.++.++-+.+ ..-.=|..-..+++++-.+|-+....+...+-+-.-.-+++........
T Consensus 415 kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~ 494 (1293)
T KOG0996|consen 415 KKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQ 494 (1293)
T ss_pred HHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 788999999999999999998876543 2233455666778888888888888888888777777888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 013576 365 VAQMEKRAVMAESMLEATLQ 384 (440)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~ 384 (440)
+.+-.-++-.|||=|+--++
T Consensus 495 ~n~~~~e~~vaesel~~L~~ 514 (1293)
T KOG0996|consen 495 VNEARSELDVAESELDILLS 514 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777778887665443
No 103
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=26.55 E-value=1.2e+03 Score=28.06 Aligned_cols=106 Identities=26% Similarity=0.259 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHhhhhcHHHhhhhHhh-------H
Q 013576 273 EELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQ-VLMKVEQEQRITEDARRNAEQD-------A 344 (440)
Q Consensus 273 ~el~~~l~em~k~d~~~~L~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~ 344 (440)
++....|++..+.-.+.++++=-|.++.+-.||++.|..|+-.+.--=- .=-+.|+|..++|-++..-+.= +
T Consensus 1062 ~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr~e~ik~~~~~kdK~e~er~~rE~n~s~i~~~V~e~krL~ 1141 (1189)
T KOG1265|consen 1062 KEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKKRMEDIKVDKVIKDKAERERRKRELNSSNIKEFVEERKRLA 1141 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778888888888888889999999999888766533221100 1125677777777666543322 2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013576 345 RAQRYAVNVLEEKYEKAMASVAQMEKRAVMAESML 379 (440)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (440)
.+|.---.-|+++-.+-...|+++||. .-+|.+-
T Consensus 1142 ~~~~k~~e~L~k~~~~~leql~e~~ka-l~~e~~~ 1175 (1189)
T KOG1265|consen 1142 EKQSKRQEQLVKKHLEVLEQLAEEEKA-LDAEAEQ 1175 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHH
Confidence 233333445677777777788888554 4444443
No 104
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=26.55 E-value=8.9e+02 Score=26.60 Aligned_cols=88 Identities=24% Similarity=0.299 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHH----HHHHHHHHHHHhhhhcHHHhhhhHhhHHHhHHHHHHHHHHHHHHHHHHHH
Q 013576 292 SARIEQLEQEVAELQQSLADKREQES----AMIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMASVAQ 367 (440)
Q Consensus 292 ~~~~e~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (440)
+..|.+|+.++..+|.-|.-.++-+. +|--.-..++|=..-++.|+ ..+..-+.-+..+.+-.+.+-+.+..
T Consensus 336 ~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak----~ea~~~~~E~~~~k~E~e~~ka~i~t 411 (522)
T PF05701_consen 336 SSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAK----KEAEEAKEEVEKAKEEAEQTKAAIKT 411 (522)
T ss_pred HhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555544433333222 22222233333333344443 34445566677788889999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 013576 368 MEKRAVMAESMLEATL 383 (440)
Q Consensus 368 ~~~~~~~~~~~~~~~~ 383 (440)
||.|...|--++||.-
T Consensus 412 ~E~rL~aa~ke~eaaK 427 (522)
T PF05701_consen 412 AEERLEAALKEAEAAK 427 (522)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998754
No 105
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=26.34 E-value=2.1e+02 Score=29.41 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013576 351 VNVLEEKYEKAMASVAQMEKRAVMAESMLEATLQYE 386 (440)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (440)
...+.+.++.|...+..+++...-++.....+++|=
T Consensus 311 ~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yf 346 (370)
T PF02181_consen 311 KEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYF 346 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567889999999999999999999999999999998
No 106
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=25.20 E-value=1.1e+02 Score=28.70 Aligned_cols=31 Identities=29% Similarity=0.501 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 013576 288 RRQLSARIEQLEQEVAELQQSLADKREQESA 318 (440)
Q Consensus 288 ~~~L~~~~e~l~~~~~~~~~~~~~~~~~~~~ 318 (440)
+++|..+.-++|.|+..|||.|.-|..+=.-
T Consensus 31 ~eeLr~EL~KvEeEI~TLrqvL~aKer~~~e 61 (162)
T PF04201_consen 31 REELRSELAKVEEEIQTLRQVLAAKERHCAE 61 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3556666667899999999999988766443
No 107
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=25.19 E-value=55 Score=22.71 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=20.1
Q ss_pred HHHHHHhhhHHHhhcHHHHHHHHHHHh
Q 013576 257 ELCSLLEDKRSAVLRAEELETALMEMV 283 (440)
Q Consensus 257 ~l~rLld~~~~~~l~~~el~~~l~em~ 283 (440)
.+|+..|.+.+|.++++++..++..+.
T Consensus 4 ~~f~~~d~~~~g~l~~~e~~~~l~~~~ 30 (63)
T cd00051 4 EAFRLFDKDGDGTISADELKAALKSLG 30 (63)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHhC
Confidence 457777888888888888887776554
No 108
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=24.87 E-value=6.2e+02 Score=24.20 Aligned_cols=55 Identities=25% Similarity=0.311 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhhHHHhhcHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHH
Q 013576 254 LKVELCSLLEDKRSAVLRAEELETALMEMVK-QDNRRQLSARIEQLEQEVAELQQS 308 (440)
Q Consensus 254 l~~~l~rLld~~~~~~l~~~el~~~l~em~k-~d~~~~L~~~~e~l~~~~~~~~~~ 308 (440)
++.+|-+||.-+.+...--++....--.+.. +....++..++-.||+++.+|++.
T Consensus 91 l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 91 LRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 6777777776665444433333332222222 334456666667777777776664
No 109
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=24.82 E-value=40 Score=24.98 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=23.4
Q ss_pred HHHHHHhhhHHHhhcHHHHHHHHHHH
Q 013576 257 ELCSLLEDKRSAVLRAEELETALMEM 282 (440)
Q Consensus 257 ~l~rLld~~~~~~l~~~el~~~l~em 282 (440)
++|+.+|.|++|.+...||..+|..+
T Consensus 3 ~~F~~~D~~~~G~i~~~el~~~l~~~ 28 (67)
T cd00052 3 QIFRSLDPDGDGLISGDEARPFLGKS 28 (67)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHc
Confidence 68999999999999999999988764
No 110
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=24.74 E-value=1.2e+03 Score=27.43 Aligned_cols=21 Identities=14% Similarity=0.439 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013576 352 NVLEEKYEKAMASVAQMEKRA 372 (440)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~ 372 (440)
..++.++...-..+..++.+.
T Consensus 472 ~~~~~~l~~l~~~l~~l~~~~ 492 (1164)
T TIGR02169 472 YDLKEEYDRVEKELSKLQREL 492 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 111
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=24.64 E-value=53 Score=26.87 Aligned_cols=54 Identities=11% Similarity=0.148 Sum_probs=34.2
Q ss_pred cCccCChhHhhcc-CCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhcHHHHHHHHHHHh
Q 013576 223 KEPAANLDEMLSG-LSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMV 283 (440)
Q Consensus 223 ~d~~~~f~~~~~~-L~~~~~~~~~~~~~~~~~l~~~l~rLld~~~~~~l~~~el~~~l~em~ 283 (440)
++.+ +|..++.. +.......+. ++ -..++++.+|.|.++.++|++|...+..++
T Consensus 28 Is~~-El~~~l~~~lg~~~~~~~s--~~----~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 28 LSKK-ELKDLLQTELSDFLDAQKD--AD----AVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred ECHH-HHHHHHHHHHHHHccCCCC--HH----HHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 5555 77777753 4221111111 11 224789999999999999999987666554
No 112
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=24.55 E-value=1.1e+03 Score=28.33 Aligned_cols=100 Identities=24% Similarity=0.285 Sum_probs=0.0
Q ss_pred HhhhHHHhhcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHhhhhcHHHhhh
Q 013576 262 LEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQ--ESAMIQVLMKVEQEQRITEDARRN 339 (440)
Q Consensus 262 ld~~~~~~l~~~el~~~l~em~k~d~~~~L~~~~e~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 339 (440)
|.+..|+-+-+++|++.|. |..-.|-.+|-.||.+|.|| .++.+-+|| |..==+++=-.|+=-+..---+..
T Consensus 436 lkEQVDAAlGAE~MV~qLt-----dknlnlEekVklLeetv~dl-Ealee~~EQL~Esn~ele~DLreEld~~~g~~kel 509 (1243)
T KOG0971|consen 436 LKEQVDAALGAEEMVEQLT-----DKNLNLEEKVKLLEETVGDL-EALEEMNEQLQESNRELELDLREELDMAKGARKEL 509 (1243)
T ss_pred HHHHHHHhhcHHHHHHHHH-----hhccCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q ss_pred hHhhHHHhHHHHHHHH--HHHHHHHHHHHH
Q 013576 340 AEQDARAQRYAVNVLE--EKYEKAMASVAQ 367 (440)
Q Consensus 340 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 367 (440)
--+--|||..++..=| -||.+.|+.|..
T Consensus 510 ~~r~~aaqet~yDrdqTI~KfRelva~Lqd 539 (1243)
T KOG0971|consen 510 QKRVEAAQETVYDRDQTIKKFRELVAHLQD 539 (1243)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
No 113
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=23.81 E-value=55 Score=26.28 Aligned_cols=29 Identities=7% Similarity=0.084 Sum_probs=26.0
Q ss_pred HHHHHHHhhhHHHhhcHHHHHHHHHHHhh
Q 013576 256 VELCSLLEDKRSAVLRAEELETALMEMVK 284 (440)
Q Consensus 256 ~~l~rLld~~~~~~l~~~el~~~l~em~k 284 (440)
.++++.+|.|.++.+++++|...++.++|
T Consensus 54 ~~i~~~~d~~~~g~I~f~eF~~~~~~~~~ 82 (88)
T cd00213 54 DKIMKDLDVNKDGKVDFQEFLVLIGKLAV 82 (88)
T ss_pred HHHHHHhccCCCCcCcHHHHHHHHHHHHH
Confidence 47888999999999999999999988866
No 114
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=23.74 E-value=1.2e+03 Score=27.28 Aligned_cols=6 Identities=17% Similarity=0.456 Sum_probs=2.4
Q ss_pred HHhcCC
Q 013576 90 LLYEGN 95 (440)
Q Consensus 90 fL~EG~ 95 (440)
|+..|.
T Consensus 110 ~~~n~~ 115 (1164)
T TIGR02169 110 YYLNGQ 115 (1164)
T ss_pred EEECCc
Confidence 333443
No 115
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=23.20 E-value=81 Score=30.09 Aligned_cols=56 Identities=16% Similarity=0.168 Sum_probs=43.4
Q ss_pred cCccCChhHhhccCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhcHHHHHHHHHHHhhhhHH
Q 013576 223 KEPAANLDEMLSGLSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNR 288 (440)
Q Consensus 223 ~d~~~~f~~~~~~L~~~~~~~~~~~~~~~~~l~~~l~rLld~~~~~~l~~~el~~~l~em~k~d~~ 288 (440)
|+++ +|-..++..+|.+.... ++ -=.||+.|-|++|.|+.++|-..+..|+.....
T Consensus 84 v~F~-~Fv~~ls~f~~~~~~~~-----Kl----~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~ 139 (187)
T KOG0034|consen 84 VDFE-EFVRLLSVFSPKASKRE-----KL----RFAFRVYDLDGDGFISREELKQILRMMVGENDD 139 (187)
T ss_pred cCHH-HHHHHHhhhcCCccHHH-----HH----HHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCc
Confidence 7887 88888877776655441 21 136999999999999999999999999986544
No 116
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=22.52 E-value=84 Score=33.39 Aligned_cols=53 Identities=13% Similarity=0.209 Sum_probs=38.1
Q ss_pred ChhHhhccCCCCCcccchhhHHHHHHH-HHHHHHHHhhhHHHhhcHHHHHHHHHHHhh
Q 013576 228 NLDEMLSGLSVNSELEGRDLQEQVVWL-KVELCSLLEDKRSAVLRAEELETALMEMVK 284 (440)
Q Consensus 228 ~f~~~~~~L~~~~~~~~~~~~~~~~~l-~~~l~rLld~~~~~~l~~~el~~~l~em~k 284 (440)
.+...|..+.+.+++.-. .+ +|+ ...+|+.+|.|+||.++++||..++..+.+
T Consensus 335 ~l~~aF~~~D~dgdG~Is-~~---E~~~~~~~F~~~D~d~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 335 AAQEIFRLYDLDGDGFIT-RE---EWLGSDAVFDALDLNHDGKITPEEMRAGLGAALR 388 (391)
T ss_pred HHHHHHHHhCCCCCCcCc-HH---HHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 456666666665554431 11 223 368999999999999999999999988764
No 117
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=22.46 E-value=4.8e+02 Score=22.03 Aligned_cols=107 Identities=21% Similarity=0.389 Sum_probs=63.0
Q ss_pred HHHHHHHHHhhhHHHhhcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhc
Q 013576 254 LKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRIT 333 (440)
Q Consensus 254 l~~~l~rLld~~~~~~l~~~el~~~l~em~k~d~~~~L~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (440)
+-.+|..++++.++++.+. ++.. |+.++.. ...+..+++.+++++..+-..+..+ .+..-+.-++.
T Consensus 16 ~~~~L~~ll~~e~~~l~~~-d~~~-l~~~~~~--k~~l~~~l~~le~~r~~~~~~~~~~--~~~~~l~~~~~-------- 81 (143)
T PF05130_consen 16 LLQELLELLEEEREALISG-DIDE-LEELVEE--KQELLEELRELEKQRQQLLAKLGAE--PEEATLSELIE-------- 81 (143)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHTT----SCHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHhC-CHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCc--cccccHHHHHh--------
Confidence 4457888888888888777 4443 4444433 4667777777777777776666555 33333444433
Q ss_pred HHHhhhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCc
Q 013576 334 EDARRNAEQDARAQRYAVNVLEEKYEKAMASVAQMEKRAVMAESMLEATLQYESGQA 390 (440)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (440)
...-++..|.+....+.++-...-.-...++..+.+-.+-.
T Consensus 82 ----------------~~~~l~~~~~~l~~~~~~~~~~n~~N~~ll~~~~~~~~~~l 122 (143)
T PF05130_consen 82 ----------------EREELQALWRELRELLEELQELNERNQQLLEQALEFVQQLL 122 (143)
T ss_dssp ----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred ----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334555555666666666666666666666665554433
No 118
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=22.09 E-value=4.8e+02 Score=21.98 Aligned_cols=41 Identities=24% Similarity=0.425 Sum_probs=32.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 013576 278 ALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESA 318 (440)
Q Consensus 278 ~l~em~k~d~~~~L~~~~e~l~~~~~~~~~~~~~~~~~~~~ 318 (440)
+|...-++++...|+.+++.++.++..+.+.+.+++.+=..
T Consensus 55 vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~e 95 (105)
T cd00632 55 VLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKE 95 (105)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677778999999999999999999888888776443
No 119
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.04 E-value=4.1e+02 Score=26.95 Aligned_cols=66 Identities=24% Similarity=0.451 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhcHHHhhhhHhh---HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 013576 295 IEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQD---ARAQRYAVNVLEEKYEKAMASVAQMEK 370 (440)
Q Consensus 295 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (440)
+-+|+.+++.|+++|..|-. |-+|-+.+||+---. -|-| -..++--++-||.|-++.+.++++|.+
T Consensus 227 i~~lkeeia~Lkk~L~qkdq---------~ileKdkqisnLKad-~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~~ 295 (305)
T KOG3990|consen 227 IQKLKEEIARLKKLLHQKDQ---------LILEKDKQISNLKAD-KEYQKELEKKHKERVQQLQKKKEESLKAIAQLRN 295 (305)
T ss_pred HHHHHHHHHHHHHHHhhhHH---------HHHhhhhhhhccCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556666666666665531 224555666652111 1111 234566678899999999999999874
No 120
>PHA01750 hypothetical protein
Probab=21.91 E-value=2.2e+02 Score=23.00 Aligned_cols=35 Identities=23% Similarity=0.463 Sum_probs=19.3
Q ss_pred HHHHHHHhhhhHH------HHHHHHHHHHHHHHHHHHHHHh
Q 013576 276 ETALMEMVKQDNR------RQLSARIEQLEQEVAELQQSLA 310 (440)
Q Consensus 276 ~~~l~em~k~d~~------~~L~~~~e~l~~~~~~~~~~~~ 310 (440)
-.|.-++|+..+. ..++-+...|++++-|+++-++
T Consensus 33 kdAvkeIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 33 KDAVKEIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 3445555555443 3344555666777777766554
No 121
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=21.72 E-value=2.1e+02 Score=25.60 Aligned_cols=26 Identities=31% Similarity=0.667 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHH
Q 013576 289 RQLSARIEQLEQEVAELQQSLADKRE 314 (440)
Q Consensus 289 ~~L~~~~e~l~~~~~~~~~~~~~~~~ 314 (440)
+.+..+.++|+.++.+|+..+++-++
T Consensus 108 ~~~~~~l~~L~~~i~~L~~~~~~~~~ 133 (134)
T PF07047_consen 108 EELQERLEELEERIEELEEQVEKQQE 133 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566778888888888877766554
No 122
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=21.44 E-value=1.5e+03 Score=27.49 Aligned_cols=59 Identities=32% Similarity=0.451 Sum_probs=40.4
Q ss_pred HHHHHHhhhHHHhhcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 013576 257 ELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAM 319 (440)
Q Consensus 257 ~l~rLld~~~~~~l~~~el~~~l~em~k~d~~~~L~~~~e~l~~~~~~~~~~~~~~~~~~~~~ 319 (440)
+++..|++-.++ .++++..-+.+|.+. ...||-+||.|+.+.+++.|.+..-+.-++-.
T Consensus 383 rlt~tleelqss--s~Ee~~SK~leleke--~KnLs~k~e~Leeri~ql~qq~~eled~~K~L 441 (1195)
T KOG4643|consen 383 RLTGTLEELQSS--SYEELISKHLELEKE--HKNLSKKHEILEERINQLLQQLAELEDLEKKL 441 (1195)
T ss_pred HHHHHHHHHhhh--hHHHHHHHHHHHHHH--hHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445554444 555555555555443 35699999999999999999998877766543
No 123
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=21.40 E-value=4.1e+02 Score=20.93 Aligned_cols=19 Identities=42% Similarity=0.723 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013576 288 RRQLSARIEQLEQEVAELQ 306 (440)
Q Consensus 288 ~~~L~~~~e~l~~~~~~~~ 306 (440)
++.|.++++.|+.++.++|
T Consensus 41 n~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 41 NRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3778888888888888776
No 124
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=21.39 E-value=4.5e+02 Score=21.38 Aligned_cols=54 Identities=22% Similarity=0.262 Sum_probs=34.0
Q ss_pred HHHHHHhhhHHHhhcHHHHHHHHHHHhhhhHHHH------HHHHHHHHHHHHHHHHHHHh
Q 013576 257 ELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQ------LSARIEQLEQEVAELQQSLA 310 (440)
Q Consensus 257 ~l~rLld~~~~~~l~~~el~~~l~em~k~d~~~~------L~~~~e~l~~~~~~~~~~~~ 310 (440)
.+-+|=.+|=+=-++.--|+..|.-+..++++.- |+..+++|.+++.++++.|.
T Consensus 8 ~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~ 67 (75)
T PF07989_consen 8 QIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLK 67 (75)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666667888888888887777666644 44445555555555555443
No 125
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=20.83 E-value=7.8e+02 Score=23.89 Aligned_cols=129 Identities=19% Similarity=0.246 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHhhcHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 013576 247 LQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNR-----RQLSARIEQLEQEVAELQQSLADKREQESAMIQ 321 (440)
Q Consensus 247 ~~~~~~~l~~~l~rLld~~~~~~l~~~el~~~l~em~k~d~~-----~~L~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~ 321 (440)
++..++=...++..+...-....-++...+.-+..|-+---. .+...+.....+++.++.+.+++-...-+.+
T Consensus 6 l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~l-- 83 (237)
T PF00261_consen 6 LKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVL-- 83 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred HHHHHHHhhhhcHHHhhhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013576 322 VLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMASVAQMEKRAVMAESMLEAT 382 (440)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (440)
|+-..-.++-=..-|+....-+..+.-...||+++...|..+|.+.--||.-+++.
T Consensus 84 -----E~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~ 139 (237)
T PF00261_consen 84 -----ENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAA 139 (237)
T ss_dssp -----HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 126
>PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro: IPR009228 This entry is represented by Bacteriophage P2, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacteriophage capsid scaffolding protein (GpO) and some related bacterial sequences. GpO is thought to function in both the assembly of proheads and the cleavage of GpN [].; GO: 0019069 viral capsid assembly
Probab=20.52 E-value=4.8e+02 Score=26.58 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 013576 287 NRRQLSARIEQLEQEVAELQQSLA 310 (440)
Q Consensus 287 ~~~~L~~~~e~l~~~~~~~~~~~~ 310 (440)
...+++.+++.|..++++|+..|+
T Consensus 229 ~~~~l~~~~~~~~~~f~~L~~~L~ 252 (276)
T PF05929_consen 229 LKQELKEQHEALTEDFAALKEKLS 252 (276)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHhh
Confidence 445666666777777777776665
No 127
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=20.43 E-value=7.6e+02 Score=23.59 Aligned_cols=112 Identities=20% Similarity=0.250 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhcHHHhhhhHhhHHHhHHH
Q 013576 272 AEELETALMEMVKQDNR-RQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYA 350 (440)
Q Consensus 272 ~~el~~~l~em~k~d~~-~~L~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (440)
|+.+...|.++.+.-.. .-|..++..|=.--.+..+.+...+.-|.-+.+. +++.+=.|.....-|+---.-+-.
T Consensus 71 f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~----~~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 71 FESLMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEK----EAELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHhhhhHHHHHHHHHHHHHHHHHH
Confidence 44444444444432221 3344444444444444444444444444444433 444444455555555555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhcc
Q 013576 351 VNVLEEKYEKAMASVAQMEKRAVMA-ESMLEATLQYES 387 (440)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 387 (440)
+..+-++.+.+-..+++|+..+-.. +....+-++|++
T Consensus 147 ~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 147 AAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777777777665433 334444555654
No 128
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=20.37 E-value=3.3e+02 Score=22.22 Aligned_cols=67 Identities=18% Similarity=0.296 Sum_probs=41.5
Q ss_pred hhHhhccCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 013576 229 LDEMLSGLSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQ 306 (440)
Q Consensus 229 f~~~~~~L~~~~~~~~~~~~~~~~~l~~~l~rLld~~~~~~l~~~el~~~l~em~k~d~~~~L~~~~e~l~~~~~~~~ 306 (440)
+...+++..|.+.+-..|++.. ++..+-+.+.+ -.+.+=+||+..-... .++.+++++||.++++|-
T Consensus 11 ~~~~~~~~~~~~~~~~~e~e~~---~r~~l~~~l~k--ldlVtREEFd~q~~~L------~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 11 LAKQISEALPAAQGPREEIEKN---IRARLQSALSK--LDLVTREEFDAQKAVL------ARTREKLEALEARLAALE 77 (79)
T ss_pred HHHHHHHHHHhhhhhHHHHHHH---HHHHHHHHHHH--CCCCcHHHHHHHHHHH------HHHHHHHHHHHHHHHHHh
Confidence 4444555555554444666666 55555555543 3456667777643332 567889999999998874
Done!