BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013577
         (440 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
           Synthetase Complexed With Trna(Val) And Valyl-Adenylate
           Analogue
 pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
           Synthetase Complexed With Trna(Val) And Valyl-Adenylate
           Analogue
 pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
           Synthetase Complexed With Trna(Val) And Valyl-Adenylate
           Analogue
 pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
           Synthetase Complexed With Trna(Val) And Valyl-Adenylate
           Analogue
 pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
           Valyl-Trna Synthetase
 pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
           Valyl-Trna Synthetase
          Length = 862

 Score = 30.0 bits (66), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 246 IVASYDYIFIWDEDLGVE--HFNAEEYIKLVRKHGLEISQPGLEPNK 290
           +V  YD +F+W   + V   HF  E   K V  HGL + + G + +K
Sbjct: 485 LVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSK 531


>pdb|2ZGT|A Chain A, Crystal Structure Of Agrocybe Aegerita Lectin Aal Mutant
           F93g
 pdb|2ZGT|B Chain B, Crystal Structure Of Agrocybe Aegerita Lectin Aal Mutant
           F93g
          Length = 167

 Score = 28.9 bits (63), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 376 DSQWIVHQTVPSLGNQGESKDGKA 399
           D  W+V Q V  + NQG   DGKA
Sbjct: 78  DGPWLVEQRVSDVANQGAGIDGKA 101


>pdb|2KQR|A Chain A, Solution Structure Of The N-Terminal Domain (Residues
           1-111) Of Brugia Malayi Asparaginyl-Trna Synthetase
          Length = 113

 Score = 28.5 bits (62), Expect = 8.7,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 395 KDGKAPWQGV-RERCKKEWTMFQGRMANAEKAYFQALGADTTD 436
           KDGK  W+   +   KK W  ++  M   EK   + L  D T+
Sbjct: 47  KDGKQVWEAASKTALKKSWKRYEQEMLKNEKVAAKMLEKDATE 89


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,147,411
Number of Sequences: 62578
Number of extensions: 558827
Number of successful extensions: 1131
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1130
Number of HSP's gapped (non-prelim): 4
length of query: 440
length of database: 14,973,337
effective HSP length: 102
effective length of query: 338
effective length of database: 8,590,381
effective search space: 2903548778
effective search space used: 2903548778
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)