Query 013577
Match_columns 440
No_of_seqs 150 out of 173
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 05:15:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05212 DUF707: Protein of un 100.0 6E-127 1E-131 931.1 26.8 293 109-426 1-294 (294)
2 cd02510 pp-GalNAc-T pp-GalNAc- 94.8 0.72 1.6E-05 44.3 13.2 136 248-385 82-227 (299)
3 cd04185 GT_2_like_b Subfamily 94.5 0.11 2.5E-06 45.8 6.7 101 248-388 78-178 (202)
4 TIGR01556 rhamnosyltran L-rham 94.4 0.2 4.3E-06 47.4 8.5 128 248-384 72-202 (281)
5 cd04186 GT_2_like_c Subfamily 94.4 0.091 2E-06 43.7 5.5 91 249-383 74-165 (166)
6 cd02526 GT2_RfbF_like RfbF is 93.9 0.25 5.3E-06 44.5 7.5 123 249-383 75-204 (237)
7 PF13641 Glyco_tranf_2_3: Glyc 91.8 0.63 1.4E-05 41.7 7.1 171 199-383 29-210 (228)
8 cd02520 Glucosylceramide_synth 91.0 0.28 6.1E-06 43.8 4.0 92 248-383 85-176 (196)
9 cd02525 Succinoglycan_BP_ExoA 89.2 0.87 1.9E-05 40.8 5.6 127 248-383 80-208 (249)
10 cd04195 GT2_AmsE_like GT2_AmsE 89.0 0.34 7.4E-06 42.5 2.8 118 247-381 78-199 (201)
11 COG1216 Predicted glycosyltran 86.6 3.7 7.9E-05 40.2 8.6 138 250-389 85-226 (305)
12 cd06433 GT_2_WfgS_like WfgS an 85.3 1.3 2.8E-05 37.9 4.3 37 248-284 74-111 (202)
13 cd06421 CESA_CelA_like CESA_Ce 83.4 0.71 1.5E-05 41.2 1.9 124 248-383 83-211 (234)
14 cd06437 CESA_CaSu_A2 Cellulose 81.8 1 2.3E-05 40.9 2.4 152 224-388 63-218 (232)
15 PLN02726 dolichyl-phosphate be 81.0 1.3 2.9E-05 41.1 2.8 125 248-383 92-218 (243)
16 cd06442 DPM1_like DPM1_like re 80.0 1.2 2.5E-05 39.7 2.0 80 199-282 26-111 (224)
17 PF01762 Galactosyl_T: Galacto 80.0 5.9 0.00013 36.3 6.6 178 134-367 6-186 (195)
18 PF13632 Glyco_trans_2_3: Glyc 78.0 12 0.00026 33.0 7.8 122 252-387 1-127 (193)
19 PF10111 Glyco_tranf_2_2: Glyc 77.4 3.8 8.2E-05 39.7 4.8 176 197-383 31-222 (281)
20 cd04188 DPG_synthase DPG_synth 76.3 1.4 3.1E-05 39.4 1.5 35 248-282 81-115 (211)
21 cd04196 GT_2_like_d Subfamily 74.8 2 4.2E-05 37.7 1.9 46 334-383 158-203 (214)
22 cd06913 beta3GnTL1_like Beta 1 71.6 5.1 0.00011 36.1 3.9 128 248-384 83-210 (219)
23 PRK11204 N-glycosyltransferase 67.3 48 0.001 33.5 10.1 172 199-387 82-264 (420)
24 cd06439 CESA_like_1 CESA_like_ 67.1 2.9 6.3E-05 38.2 1.3 40 248-287 108-147 (251)
25 PTZ00260 dolichyl-phosphate be 66.8 5.4 0.00012 40.2 3.3 198 150-378 71-287 (333)
26 PF00535 Glycos_transf_2: Glyc 66.4 4.9 0.00011 32.9 2.4 39 248-286 77-115 (169)
27 cd00761 Glyco_tranf_GTA_type G 65.1 7.7 0.00017 30.7 3.2 22 249-270 77-98 (156)
28 cd06434 GT2_HAS Hyaluronan syn 64.5 3.8 8.3E-05 36.8 1.6 85 200-288 28-116 (235)
29 cd06420 GT2_Chondriotin_Pol_N 59.4 24 0.00053 30.3 5.6 27 248-274 78-104 (182)
30 cd06435 CESA_NdvC_like NdvC_li 56.8 6.3 0.00014 35.7 1.6 123 249-380 84-206 (236)
31 cd02522 GT_2_like_a GT_2_like_ 56.6 26 0.00057 31.1 5.4 84 199-287 27-110 (221)
32 PF03672 UPF0154: Uncharacteri 56.0 6.1 0.00013 32.4 1.2 17 32-48 3-19 (64)
33 PF13506 Glyco_transf_21: Glyc 55.9 5.8 0.00013 36.4 1.2 121 248-383 30-153 (175)
34 PF13712 Glyco_tranf_2_5: Glyc 53.6 27 0.00058 33.4 5.3 27 248-274 53-80 (217)
35 PF02434 Fringe: Fringe-like; 48.0 11 0.00024 36.8 1.9 123 248-390 85-214 (252)
36 PRK14583 hmsR N-glycosyltransf 46.0 85 0.0018 32.7 7.9 74 199-276 103-182 (444)
37 PRK01844 hypothetical protein; 44.7 12 0.00026 31.4 1.2 16 33-48 11-26 (72)
38 PF09258 Glyco_transf_64: Glyc 44.5 28 0.00062 34.1 4.0 78 199-277 26-103 (247)
39 cd06423 CESA_like CESA_like is 42.4 16 0.00034 29.6 1.6 54 231-287 63-117 (180)
40 PRK10714 undecaprenyl phosphat 41.9 70 0.0015 32.1 6.4 107 150-281 7-121 (325)
41 cd04184 GT2_RfbC_Mx_like Myxoc 38.9 25 0.00053 30.8 2.4 37 248-284 82-119 (202)
42 cd04192 GT_2_like_e Subfamily 38.0 26 0.00056 31.0 2.4 38 248-285 81-118 (229)
43 PRK11677 hypothetical protein; 36.0 19 0.00041 33.1 1.3 19 33-51 7-25 (134)
44 PLN03133 beta-1,3-galactosyltr 35.8 72 0.0016 36.1 5.9 104 249-366 475-580 (636)
45 PF06295 DUF1043: Protein of u 35.0 19 0.00042 32.1 1.1 20 32-51 2-21 (128)
46 PRK00523 hypothetical protein; 34.3 22 0.00047 29.9 1.2 15 33-47 12-26 (72)
47 PF14654 Epiglycanin_C: Mucin, 33.9 21 0.00045 31.9 1.1 29 24-52 9-42 (106)
48 cd06427 CESA_like_2 CESA_like_ 33.9 39 0.00085 31.2 3.0 38 248-285 83-122 (241)
49 PRK05454 glucosyltransferase M 33.7 92 0.002 35.3 6.3 84 198-283 157-255 (691)
50 PF09828 Chrome_Resist: Chroma 33.7 25 0.00054 32.6 1.6 53 234-292 14-84 (135)
51 TIGR03469 HonB hopene-associat 31.5 46 0.00099 33.9 3.3 125 250-381 134-260 (384)
52 cd04190 Chitin_synth_C C-termi 30.2 84 0.0018 29.5 4.6 30 247-276 71-100 (244)
53 PF12072 DUF3552: Domain of un 27.5 26 0.00056 33.3 0.7 18 33-50 3-20 (201)
54 KOG3708 Uncharacterized conser 26.7 35 0.00077 38.1 1.6 36 238-273 86-121 (681)
55 PF11688 DUF3285: Protein of u 25.0 34 0.00074 26.5 0.8 27 23-50 16-42 (45)
56 PF12996 DUF3880: DUF based on 24.3 37 0.0008 27.6 1.0 16 244-259 13-28 (79)
57 KOG2246 Galactosyltransferases 23.1 60 0.0013 34.1 2.4 108 233-377 152-268 (364)
58 PF12621 DUF3779: Phosphate me 22.9 47 0.001 28.3 1.4 45 238-286 33-77 (95)
59 PF01060 DUF290: Transthyretin 22.7 1.8E+02 0.004 23.6 4.7 19 315-333 62-80 (80)
60 PRK10073 putative glycosyl tra 22.7 78 0.0017 31.8 3.1 36 248-283 84-119 (328)
61 cd06438 EpsO_like EpsO protein 21.9 89 0.0019 27.5 3.0 29 248-276 80-108 (183)
62 TIGR03472 HpnI hopanoid biosyn 21.3 64 0.0014 32.7 2.2 126 248-383 125-252 (373)
63 KOG2287 Galactosyltransferases 21.2 3.8E+02 0.0083 27.7 7.7 184 124-368 100-293 (349)
64 PLN02867 Probable galacturonos 21.1 44 0.00096 37.1 1.1 34 239-273 334-367 (535)
No 1
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=100.00 E-value=6.4e-127 Score=931.05 Aligned_cols=293 Identities=65% Similarity=1.194 Sum_probs=287.3
Q ss_pred eeccCCCCCCCCCCCCceecCCCccccccCCCCCCCCCCCCceEEEEEeccccccchHHHHhhhccCCCCcccccccccc
Q 013577 109 IWVPTNPRGAERLPPKIVRAESDFYLRRLWGNPNEDLTSQPKYLVTFTVGYDQKNNINAAIKKVGFCFPPTIFFLCVHLC 188 (440)
Q Consensus 109 ~~~~~~p~g~e~lp~giv~~~sd~~~r~Lwg~~~~d~~~~~~~Lla~~vG~~qk~~v~~~v~k~~~~f~~~~~~~~~~~~ 188 (440)
||++++|+|+|+||||||+++|||+||||||+|++|...++|||||||||+|||++||++|+|
T Consensus 1 ~~~~~~p~g~e~Lp~giv~~~sd~~~r~lw~~p~~~~~~~~k~Lla~~VG~kqk~~vd~~v~K----------------- 63 (294)
T PF05212_consen 1 IWVPCNPRGAERLPPGIVVRESDLELRPLWGNPSEDLPKKPKYLLAMTVGIKQKDNVDAIVKK----------------- 63 (294)
T ss_pred CCcCCCCCccccCCCCccccCCCceeeecCCCccccccCCCceEEEEEecHHHHhhhhHHHhh-----------------
Confidence 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCcEEEEEEECCCCCcccccccCCcceEEEeeccccccchhhccCcccccCccEEEEecCccccCCCCHH
Q 013577 189 VTNICSKQFSDNFTIVLFHYDGRTTEWNEFEWSKRAIHVSVRKQTKWWYAKRFLHPDIVASYDYIFIWDEDLGVEHFNAE 268 (440)
Q Consensus 189 ~~~~~s~~~~~nFdV~LFhYDG~v~eW~d~~Ws~~aiHVsa~kqtKWw~akRFLHPdiva~YDYIfLwDDDL~Vd~f~i~ 268 (440)
|++|||||||||||++++|++|+||++||||+++|||||||||||||||+|++|||||||||||+||+|+|+
T Consensus 64 --------f~~nF~i~LfhYDg~vd~w~~~~ws~~aiHv~~~kqtKww~akrfLHPdiv~~YdYiflwDeDL~vd~f~~~ 135 (294)
T PF05212_consen 64 --------FSDNFDIMLFHYDGRVDEWDDFEWSDRAIHVSARKQTKWWFAKRFLHPDIVAPYDYIFLWDEDLGVDHFDIN 135 (294)
T ss_pred --------hccCceEEEEEecCCcCchhhcccccceEEEEeccceEEeehhhhcChhhhccceeEEecCCccCcCcCCHH
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcccCCCccCCCC-cceeeeeecCCcceeeecccCCCCCCCCCCCCccceEEeccccccHHHHHHhhhhh
Q 013577 269 EYIKLVRKHGLEISQPGLEPNKG-LTWQMTKRRGDREVHKETEEKPGWCSNPHLPPCAAFVEIMAPVFSRDAWRCVWHMI 347 (440)
Q Consensus 269 ryf~Ivr~~gLeISQPALd~~S~-ish~iT~R~~~~~vHr~~~~~~g~c~~~~~ppcTgFVEIMAPVFSR~Awrcvw~mi 347 (440)
|||+||++||||||||||+++++ +||++|+|+++.++||.+.+++++|+++++||||||||||||||||+|||||||||
T Consensus 136 ry~~Ivk~~gLeISQPALd~~~~~~~~~iT~R~~~~~vhr~~~~~~~~~~~~~~ppct~fVEiMAPVFSr~Awrcvw~mi 215 (294)
T PF05212_consen 136 RYFEIVKKEGLEISQPALDPDSSEIHHPITKRRPDSEVHRKTRGGPRCCDDSTGPPCTGFVEIMAPVFSRAAWRCVWHMI 215 (294)
T ss_pred HHHHHHHHhCCcccCcccCCCCceeeeeEEeecCCceeEeccCCCCCcCCCCCCCCcceEEEEecceechHHHHHHHhcc
Confidence 99999999999999999999875 99999999999999998888888999999999999999999999999999999999
Q ss_pred cCCCcceehHHHHhhHhhcCCCCcEEEEeeeeEEeeccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013577 348 QNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQTVPSLGNQGESKDGKAPWQGVRERCKKEWTMFQGRMANAEKAY 426 (440)
Q Consensus 348 QNDLvhGWGLDf~w~~Ca~~~~~kIGVVDa~~VvH~g~PtLG~qG~~~~~~~~~~~VR~r~~~E~~~F~~R~~~A~k~~ 426 (440)
||||+|||||||+|++|++.+++||||||||||+|+++||||+||.++.+.++|.+||+||++||++|++||++|+|+|
T Consensus 216 qNDLvhGWGLDf~~~~c~~~~~~kiGVVDs~~VvH~gvptLG~~~~~~~~~~~~~~Vr~r~~~E~~~F~~R~~~a~~~~ 294 (294)
T PF05212_consen 216 QNDLVHGWGLDFKWGYCAGDRHKKIGVVDSQYVVHTGVPTLGGQGNSEKGKDPREEVRRRSFAEMRIFQKRWANAVKEY 294 (294)
T ss_pred cCCCccccchhhhHHHHhccccccEEEEeeEEEEEcCCCcCCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999998889999999999999999999999999989999999999999999999999999999987
No 2
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=94.76 E-value=0.72 Score=44.29 Aligned_cols=136 Identities=15% Similarity=0.130 Sum_probs=76.6
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCccCCCC--cceeeeee--cC--CcceeeecccCC--CCCC-C
Q 013577 248 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPNKG--LTWQMTKR--RG--DREVHKETEEKP--GWCS-N 318 (440)
Q Consensus 248 a~YDYIfLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd~~S~--ish~iT~R--~~--~~~vHr~~~~~~--g~c~-~ 318 (440)
+..|||++.|+|..++..-++++++.+....-.+.-|.+..-.. ..+.-... .. ...++..-.... ..+. .
T Consensus 82 A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (299)
T cd02510 82 ATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEERRRES 161 (299)
T ss_pred ccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCHHHhhhcC
Confidence 67999999999999999999999999998887777787653321 11111110 00 001111000000 0000 0
Q ss_pred CCCCCccceEEeccccccHHHHHHhhhhhcCCCcceeh-HHHHhhHhhcCCCCcEEEEeeeeEEeecc
Q 013577 319 PHLPPCAAFVEIMAPVFSRDAWRCVWHMIQNDLVHGWG-LDFALRKCVEPAHEKIGVVDSQWIVHQTV 385 (440)
Q Consensus 319 ~~~ppcTgFVEIMAPVFSR~Awrcvw~miQNDLvhGWG-LDf~w~~Ca~~~~~kIGVVDa~~VvH~g~ 385 (440)
+..+.-+.++-..+=+++|++|+.+=.+ ... ...|| =|.-+..-+.....+|-++-...|.|...
T Consensus 162 ~~~~~~~~~~~g~~~~irr~~~~~vGgf-De~-~~~~~~ED~Dl~~R~~~~G~~i~~~p~a~v~H~~~ 227 (299)
T cd02510 162 PTAPIRSPTMAGGLFAIDREWFLELGGY-DEG-MDIWGGENLELSFKVWQCGGSIEIVPCSRVGHIFR 227 (299)
T ss_pred CCCCccCccccceeeEEEHHHHHHhCCC-CCc-ccccCchhHHHHHHHHHcCCeEEEeeccEEEEecc
Confidence 1112222233233447999999987443 333 34565 45444333333457899999999999755
No 3
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.54 E-value=0.11 Score=45.76 Aligned_cols=101 Identities=20% Similarity=0.236 Sum_probs=68.9
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcceeeecccCCCCCCCCCCCCccce
Q 013577 248 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPNKGLTWQMTKRRGDREVHKETEEKPGWCSNPHLPPCAAF 327 (440)
Q Consensus 248 a~YDYIfLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~c~~~~~ppcTgF 327 (440)
+.+||+++.|+|..++.-.++++.+.++..+..+..|....... ++.+
T Consensus 78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~- 125 (202)
T cd04185 78 LGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPDG-------------------------------SFVG- 125 (202)
T ss_pred cCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcCCC-------------------------------ceEE-
Confidence 67999999999999998888888888775555555543322110 1112
Q ss_pred EEeccccccHHHHHHhhhhhcCCCcceehHHHHhhHhhcCCCCcEEEEeeeeEEeeccCCC
Q 013577 328 VEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQTVPSL 388 (440)
Q Consensus 328 VEIMAPVFSR~Awrcvw~miQNDLvhGWGLDf~w~~Ca~~~~~kIGVVDa~~VvH~g~PtL 388 (440)
-+++|++|+.+ .... +.-..||=|.-+..-+.....++ .+.+..+.|....+.
T Consensus 126 -----~~~~~~~~~~~-g~~~-~~~~~~~eD~~~~~r~~~~G~~i-~~~~~~~~h~~~~~~ 178 (202)
T cd04185 126 -----VLISRRVVEKI-GLPD-KEFFIWGDDTEYTLRASKAGPGI-YVPDAVVVHKTAINK 178 (202)
T ss_pred -----EEEeHHHHHHh-CCCC-hhhhccchHHHHHHHHHHcCCcE-EecceEEEEcccccc
Confidence 24889999866 3332 33457888877666555456788 999999999854443
No 4
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=94.43 E-value=0.2 Score=47.40 Aligned_cols=128 Identities=9% Similarity=0.029 Sum_probs=74.6
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHHh--CCcccCCCcc-CCCCcceeeeeecCCcceeeecccCCCCCCCCCCCCc
Q 013577 248 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKH--GLEISQPGLE-PNKGLTWQMTKRRGDREVHKETEEKPGWCSNPHLPPC 324 (440)
Q Consensus 248 a~YDYIfLwDDDL~Vd~f~i~ryf~Ivr~~--gLeISQPALd-~~S~ish~iT~R~~~~~vHr~~~~~~g~c~~~~~ppc 324 (440)
+.+|||++.|||..++.-.++++++.+++. +.-+..|..- .+.....+...... ... +.. .....+.+.-
T Consensus 72 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~-----~~~~~~~~~~ 144 (281)
T TIGR01556 72 RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDG-LLL-RQI-----SLDGLTTPQK 144 (281)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecc-cce-eee-----cccccCCcee
Confidence 479999999999999988899999988876 5677777652 22211112111111 100 000 0000010000
Q ss_pred cceEEeccccccHHHHHHhhhhhcCCCcceehHHHHhhHhhcCCCCcEEEEeeeeEEeec
Q 013577 325 AAFVEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQT 384 (440)
Q Consensus 325 TgFVEIMAPVFSR~Awrcvw~miQNDLvhGWGLDf~w~~Ca~~~~~kIGVVDa~~VvH~g 384 (440)
+.++=.-..+++|++++.+=. +..++. .++.|.-|..-+.....++.++....+.|..
T Consensus 145 ~~~~~~sg~li~~~~~~~iG~-fde~~f-i~~~D~e~~~R~~~~G~~i~~~~~~~~~H~~ 202 (281)
T TIGR01556 145 TSFLISSGCLITREVYQRLGM-MDEELF-IDHVDTEWSLRAQNYGIPLYIDPDIVLEHRI 202 (281)
T ss_pred ccEEEcCcceeeHHHHHHhCC-ccHhhc-ccchHHHHHHHHHHCCCEEEEeCCEEEEEec
Confidence 111100123789999998733 344443 4667877665554456799999999999963
No 5
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.40 E-value=0.091 Score=43.68 Aligned_cols=91 Identities=19% Similarity=0.137 Sum_probs=62.1
Q ss_pred CccEEEEecCccccCCCCHHHHHHHHHHh-CCcccCCCccCCCCcceeeeeecCCcceeeecccCCCCCCCCCCCCccce
Q 013577 249 SYDYIFIWDEDLGVEHFNAEEYIKLVRKH-GLEISQPGLEPNKGLTWQMTKRRGDREVHKETEEKPGWCSNPHLPPCAAF 327 (440)
Q Consensus 249 ~YDYIfLwDDDL~Vd~f~i~ryf~Ivr~~-gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~c~~~~~ppcTgF 327 (440)
.+|||++.|||...+...+.++.+.+.+. +..+..+. +
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~-------------------~---------------------- 112 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK-------------------V---------------------- 112 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc-------------------C----------------------
Confidence 79999999999999888888888754443 33333322 0
Q ss_pred EEeccccccHHHHHHhhhhhcCCCcceehHHHHhhHhhcCCCCcEEEEeeeeEEee
Q 013577 328 VEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQ 383 (440)
Q Consensus 328 VEIMAPVFSR~Awrcvw~miQNDLvhGWGLDf~w~~Ca~~~~~kIGVVDa~~VvH~ 383 (440)
=..+.+|++++|+.+-.+ . +....+|-|..+...+.....++..+....+.|.
T Consensus 113 -~~~~~~~~~~~~~~~~~~-~-~~~~~~~eD~~~~~~~~~~g~~i~~~~~~~~~h~ 165 (166)
T cd04186 113 -SGAFLLVRREVFEEVGGF-D-EDFFLYYEDVDLCLRARLAGYRVLYVPQAVIYHH 165 (166)
T ss_pred -ceeeEeeeHHHHHHcCCC-C-hhhhccccHHHHHHHHHHcCCeEEEccceEEEec
Confidence 012347899999976332 2 2222477787777665555689999999999996
No 6
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=93.88 E-value=0.25 Score=44.51 Aligned_cols=123 Identities=15% Similarity=0.097 Sum_probs=64.3
Q ss_pred CccEEEEecCccccCCCCHHHHH---HHHH-HhCCcccCCCccCCCC-cceeeeeecCCcceeeecccCCCCCCCCCCCC
Q 013577 249 SYDYIFIWDEDLGVEHFNAEEYI---KLVR-KHGLEISQPGLEPNKG-LTWQMTKRRGDREVHKETEEKPGWCSNPHLPP 323 (440)
Q Consensus 249 ~YDYIfLwDDDL~Vd~f~i~ryf---~Ivr-~~gLeISQPALd~~S~-ish~iT~R~~~~~vHr~~~~~~g~c~~~~~pp 323 (440)
.||||++.|+|..++...+.+++ +..+ ...+-+..|....... .... ..+.....+.. .. + ...+
T Consensus 75 ~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~----~---~~~~ 144 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSP-GVRKSGYKLRI--QK----E---GEEG 144 (237)
T ss_pred CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeecc-ceeccCcccee--cc----c---ccCC
Confidence 68999999999999988888885 2222 2244455554432211 1110 00111100000 00 0 0000
Q ss_pred ccceEEec--cccccHHHHHHhhhhhcCCCcceehHHHHhhHhhcCCCCcEEEEeeeeEEee
Q 013577 324 CAAFVEIM--APVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQ 383 (440)
Q Consensus 324 cTgFVEIM--APVFSR~Awrcvw~miQNDLvhGWGLDf~w~~Ca~~~~~kIGVVDa~~VvH~ 383 (440)
+...-.++ .-+|+|++++.+=.+ ..+. ...|-|..|..-+.....++..+....|.|.
T Consensus 145 ~~~~~~~~~~~~~~rr~~~~~~ggf-d~~~-~~~~eD~d~~~r~~~~G~~~~~~~~~~v~h~ 204 (237)
T cd02526 145 LKEVDFLITSGSLISLEALEKVGGF-DEDL-FIDYVDTEWCLRARSKGYKIYVVPDAVLKHE 204 (237)
T ss_pred ceEeeeeeccceEEcHHHHHHhCCC-CHHH-cCccchHHHHHHHHHcCCcEEEEcCeEEEec
Confidence 11111111 126899999987544 2232 2345676666555445678999888888885
No 7
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=91.81 E-value=0.63 Score=41.75 Aligned_cols=171 Identities=20% Similarity=0.189 Sum_probs=84.9
Q ss_pred CCcEEEEEEECCCCCcccc-c-----ccCCcceEEEee---cc--ccccchhhccCcccccCccEEEEecCccccCCCCH
Q 013577 199 DNFTIVLFHYDGRTTEWNE-F-----EWSKRAIHVSVR---KQ--TKWWYAKRFLHPDIVASYDYIFIWDEDLGVEHFNA 267 (440)
Q Consensus 199 ~nFdV~LFhYDG~v~eW~d-~-----~Ws~~aiHVsa~---kq--tKWw~akRFLHPdiva~YDYIfLwDDDL~Vd~f~i 267 (440)
.++.|+++. |+..++=.+ + ++...-++|... .| +|-..+++.+. ...+|||++.|||..++...+
T Consensus 29 ~~~~v~vvd-~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~~~~---~~~~d~i~~lD~D~~~~p~~l 104 (228)
T PF13641_consen 29 PRLEVVVVD-DGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALNEALA---AARGDYILFLDDDTVLDPDWL 104 (228)
T ss_dssp HTEEEEEEE-E-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHHHHH---H---SEEEEE-SSEEE-CHHH
T ss_pred CCeEEEEEE-CCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHHHHH---hcCCCEEEEECCCcEECHHHH
Confidence 568888877 454433111 1 233323444332 22 35444455552 145999999999999999999
Q ss_pred HHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcceeeecccCCCCCCCCCCCCccceEEeccccccHHHHHHhhhhh
Q 013577 268 EEYIKLVRKHGLEISQPGLEPNKGLTWQMTKRRGDREVHKETEEKPGWCSNPHLPPCAAFVEIMAPVFSRDAWRCVWHMI 347 (440)
Q Consensus 268 ~ryf~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~c~~~~~ppcTgFVEIMAPVFSR~Awrcvw~mi 347 (440)
.++++.+...+..+.|+....... .+.++.-......+.......+. .. . . ..++=.-+=+|+|++++.+-.+
T Consensus 105 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~-~-~-~~~~~G~~~~~rr~~~~~~g~f- 177 (228)
T PF13641_consen 105 ERLLAAFADPGVGAVGGPVFPDND-RNWLTRLQDLFFARWHLRFRSGR--RA-L-G-VAFLSGSGMLFRRSALEEVGGF- 177 (228)
T ss_dssp HHHHHHHHBSS--EEEEEEEETTC-CCEEEE-TT--S-EETTTS-TT---B-------S-B--TEEEEEHHHHHHH-S--
T ss_pred HHHHHHHHhCCCCeEeeeEeecCC-CCHHHHHHHHHHhhhhhhhhhhh--cc-c-c-eeeccCcEEEEEHHHHHHhCCC-
Confidence 999999977888888876644421 11122111111001000000000 00 0 0 0111112337999999988654
Q ss_pred cCCCcceehHHHHhhHhhcCCCCcEEEEeeeeEEee
Q 013577 348 QNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQ 383 (440)
Q Consensus 348 QNDLvhGWGLDf~w~~Ca~~~~~kIGVVDa~~VvH~ 383 (440)
+. ..-|=|+.+..-+.....++.......|.|.
T Consensus 178 -d~--~~~~eD~~l~~r~~~~G~~~~~~~~~~v~~~ 210 (228)
T PF13641_consen 178 -DP--FILGEDFDLCLRLRAAGWRIVYAPDALVYHE 210 (228)
T ss_dssp --S--SSSSHHHHHHHHHHHTT--EEEEEEEEEEE-
T ss_pred -CC--CCcccHHHHHHHHHHCCCcEEEECCcEEEEe
Confidence 22 3455888777666557789999998888886
No 8
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=90.99 E-value=0.28 Score=43.81 Aligned_cols=92 Identities=14% Similarity=0.161 Sum_probs=57.8
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcceeeecccCCCCCCCCCCCCccce
Q 013577 248 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPNKGLTWQMTKRRGDREVHKETEEKPGWCSNPHLPPCAAF 327 (440)
Q Consensus 248 a~YDYIfLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~c~~~~~ppcTgF 327 (440)
+.+|||++.|.|..++...+.++++.....+..+.++. | ++
T Consensus 85 a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~------------------------------~-------~~-- 125 (196)
T cd02520 85 ARYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVTCL------------------------------C-------AF-- 125 (196)
T ss_pred CCCCEEEEECCCceEChhHHHHHHHHhhCCCCCeEEee------------------------------c-------cc--
Confidence 67999999999998887777777765432222222211 0 01
Q ss_pred EEeccccccHHHHHHhhhhhcCCCcceehHHHHhhHhhcCCCCcEEEEeeeeEEee
Q 013577 328 VEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQ 383 (440)
Q Consensus 328 VEIMAPVFSR~Awrcvw~miQNDLvhGWGLDf~w~~Ca~~~~~kIGVVDa~~VvH~ 383 (440)
..+-+|+|++|+.+=.+ .....-++=|+.+..-+.....++..++.. ++|.
T Consensus 126 --g~~~~~r~~~~~~~ggf--~~~~~~~~eD~~l~~rl~~~G~~i~~~~~~-~~~~ 176 (196)
T cd02520 126 --GKSMALRREVLDAIGGF--EAFADYLAEDYFLGKLIWRLGYRVVLSPYV-VMQP 176 (196)
T ss_pred --CceeeeEHHHHHhccCh--HHHhHHHHHHHHHHHHHHHcCCeEEEcchh-eecc
Confidence 12347899999976443 111123467888887776667899888775 5553
No 9
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=89.20 E-value=0.87 Score=40.82 Aligned_cols=127 Identities=12% Similarity=0.042 Sum_probs=67.3
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCccCCC-CcceeeeeecCCcceeeecccCCCCCCCCCCCCccc
Q 013577 248 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPNK-GLTWQMTKRRGDREVHKETEEKPGWCSNPHLPPCAA 326 (440)
Q Consensus 248 a~YDYIfLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd~~S-~ish~iT~R~~~~~vHr~~~~~~g~c~~~~~ppcTg 326 (440)
+.+|||.+.|+|..++...++++++..++.+..+.+....... ........+........ . ....+-.... . .
T Consensus 80 a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~-~--~ 153 (249)
T cd02525 80 SRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGS-G--GSAYRGGAVK-I--G 153 (249)
T ss_pred hCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhcc-C--Cccccccccc-c--c
Confidence 4799999999999999888999998888877776655432211 10000000000000000 0 0000000000 0 0
Q ss_pred eEEec-cccccHHHHHHhhhhhcCCCcceehHHHHhhHhhcCCCCcEEEEeeeeEEee
Q 013577 327 FVEIM-APVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQ 383 (440)
Q Consensus 327 FVEIM-APVFSR~Awrcvw~miQNDLvhGWGLDf~w~~Ca~~~~~kIGVVDa~~VvH~ 383 (440)
++-.+ .=+|+|++|+.+=. +.... ..|-|+.+..-+.....++..+....+.|.
T Consensus 154 ~~~~~~~~~~~~~~~~~~g~-~~~~~--~~~eD~~l~~r~~~~G~~~~~~~~~~~~~~ 208 (249)
T cd02525 154 YVDTVHHGAYRREVFEKVGG-FDESL--VRNEDAELNYRLRKAGYKIWLSPDIRVYYY 208 (249)
T ss_pred cccccccceEEHHHHHHhCC-CCccc--CccchhHHHHHHHHcCcEEEEcCCeEEEEc
Confidence 00001 11689999987633 22222 346776665444335678999999888886
No 10
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=88.98 E-value=0.34 Score=42.48 Aligned_cols=118 Identities=14% Similarity=0.099 Sum_probs=64.9
Q ss_pred ccCccEEEEecCccccCCCCHHHHHHHHHHh-CCcccCCCccCCC--CcceeeeeecCCcceeeeccc-CCCCCCCCCCC
Q 013577 247 VASYDYIFIWDEDLGVEHFNAEEYIKLVRKH-GLEISQPGLEPNK--GLTWQMTKRRGDREVHKETEE-KPGWCSNPHLP 322 (440)
Q Consensus 247 va~YDYIfLwDDDL~Vd~f~i~ryf~Ivr~~-gLeISQPALd~~S--~ish~iT~R~~~~~vHr~~~~-~~g~c~~~~~p 322 (440)
.+.+|||++.|+|..++.-.++++++.++++ +..+..+....-. ...+.... .+.. .+...+ ....|
T Consensus 78 ~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~------ 148 (201)
T cd04195 78 HCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGKRR-LPTS--HDDILKFARRRS------ 148 (201)
T ss_pred hcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeecccc-CCCC--HHHHHHHhccCC------
Confidence 3679999999999999988899988887654 5666655443211 11111110 0000 000000 00111
Q ss_pred CccceEEeccccccHHHHHHhhhhhcCCCcceehHHHHhhHhhcCCCCcEEEEeeeeEE
Q 013577 323 PCAAFVEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIV 381 (440)
Q Consensus 323 pcTgFVEIMAPVFSR~Awrcvw~miQNDLvhGWGLDf~w~~Ca~~~~~kIGVVDa~~Vv 381 (440)
.+..++=+|+|++++.+-.+- .. -++-|+.+...+.....++..++...+.
T Consensus 149 ----~~~~~~~~~rr~~~~~~g~~~--~~--~~~eD~~~~~r~~~~g~~~~~~~~~~~~ 199 (201)
T cd04195 149 ----PFNHPTVMFRKSKVLAVGGYQ--DL--PLVEDYALWARMLANGARFANLPEILVK 199 (201)
T ss_pred ----CCCChHHhhhHHHHHHcCCcC--CC--CCchHHHHHHHHHHcCCceecccHHHhh
Confidence 111122378999999876652 22 4677877766554445677776554443
No 11
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=86.58 E-value=3.7 Score=40.15 Aligned_cols=138 Identities=19% Similarity=0.079 Sum_probs=86.8
Q ss_pred ccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCc----ceeeecccCCCCCCCCCCCCcc
Q 013577 250 YDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPNKGLTWQMTKRRGDR----EVHKETEEKPGWCSNPHLPPCA 325 (440)
Q Consensus 250 YDYIfLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~----~vHr~~~~~~g~c~~~~~ppcT 325 (440)
|+|++++++|..++...++++++.+++.+-...-+++-.+..-...+..+.... ..++..............+.|-
T Consensus 85 ~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (305)
T COG1216 85 DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRGGESDGLTGGWRASPLLEIAPDLSSYLEVV 164 (305)
T ss_pred CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheeccccccccccceecccccccccccchhhhh
Confidence 559999999999999999999999999988877777665533222222221100 0000000000011111123333
Q ss_pred ceEEeccccccHHHHHHhhhhhcCCCcceehHHHHhhHhhcCCCCcEEEEeeeeEEeeccCCCC
Q 013577 326 AFVEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQTVPSLG 389 (440)
Q Consensus 326 gFVEIMAPVFSR~Awrcvw~miQNDLvhGWGLDf~w~~Ca~~~~~kIGVVDa~~VvH~g~PtLG 389 (440)
.++..-+-+++|++++.+=.+ ..+. =.+.-|.-|..=+.....++..+=.-.|.|...-+.+
T Consensus 165 ~~~~G~~~li~~~~~~~vG~~-de~~-F~y~eD~D~~~R~~~~G~~i~~~p~a~i~H~~g~s~~ 226 (305)
T COG1216 165 ASLSGACLLIRREAFEKVGGF-DERF-FIYYEDVDLCLRARKAGYKIYYVPDAIIYHKIGSSKG 226 (305)
T ss_pred hhcceeeeEEcHHHHHHhCCC-Cccc-ceeehHHHHHHHHHHcCCeEEEeeccEEEEeccCCCC
Confidence 466776789999999988663 3344 3677777777666555679999999999997555554
No 12
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=85.32 E-value=1.3 Score=37.93 Aligned_cols=37 Identities=11% Similarity=-0.031 Sum_probs=27.5
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHH-HHhCCcccCC
Q 013577 248 ASYDYIFIWDEDLGVEHFNAEEYIKLV-RKHGLEISQP 284 (440)
Q Consensus 248 a~YDYIfLwDDDL~Vd~f~i~ryf~Iv-r~~gLeISQP 284 (440)
+.+|||++.|+|..++.-.+.++++.. +..+..+...
T Consensus 74 a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g 111 (202)
T cd06433 74 ATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYG 111 (202)
T ss_pred cCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEe
Confidence 568999999999999998888888444 3334554433
No 13
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=83.40 E-value=0.71 Score=41.25 Aligned_cols=124 Identities=10% Similarity=-0.098 Sum_probs=71.3
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHH-hCCcccCCCccCC-CCcceeeeeecC---CcceeeecccCCCCCCCCCCC
Q 013577 248 ASYDYIFIWDEDLGVEHFNAEEYIKLVRK-HGLEISQPGLEPN-KGLTWQMTKRRG---DREVHKETEEKPGWCSNPHLP 322 (440)
Q Consensus 248 a~YDYIfLwDDDL~Vd~f~i~ryf~Ivr~-~gLeISQPALd~~-S~ish~iT~R~~---~~~vHr~~~~~~g~c~~~~~p 322 (440)
+.+|||++.|+|..++.-.+.++++.+.+ .++.+.++..... ......+..... ....+. ....... .
T Consensus 83 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~ 155 (234)
T cd06421 83 TTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGV-IQPGRDR------W 155 (234)
T ss_pred CCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHH-HHHHHhh------c
Confidence 47999999999999999999999999987 6777776643211 000000000000 000000 0000000 0
Q ss_pred CccceEEeccccccHHHHHHhhhhhcCCCcceehHHHHhhHhhcCCCCcEEEEeeeeEEee
Q 013577 323 PCAAFVEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQ 383 (440)
Q Consensus 323 pcTgFVEIMAPVFSR~Awrcvw~miQNDLvhGWGLDf~w~~Ca~~~~~kIGVVDa~~VvH~ 383 (440)
++ .++=.+.=+|+|++++.+-.+- + ...+-|+.+..-+.....+|..++...+.|.
T Consensus 156 ~~-~~~~g~~~~~r~~~~~~ig~~~--~--~~~~eD~~l~~r~~~~g~~i~~~~~~~~~~~ 211 (234)
T cd06421 156 GA-AFCCGSGAVVRREALDEIGGFP--T--DSVTEDLATSLRLHAKGWRSVYVPEPLAAGL 211 (234)
T ss_pred CC-ceecCceeeEeHHHHHHhCCCC--c--cceeccHHHHHHHHHcCceEEEecCcccccc
Confidence 11 1222234589999999886552 2 2457788777554445568888888777775
No 14
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=81.82 E-value=1 Score=40.95 Aligned_cols=152 Identities=14% Similarity=0.007 Sum_probs=78.6
Q ss_pred ceEEEee--ccccccchhhccCcccccCccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCccCC-CCcceeee-ee
Q 013577 224 AIHVSVR--KQTKWWYAKRFLHPDIVASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPN-KGLTWQMT-KR 299 (440)
Q Consensus 224 aiHVsa~--kqtKWw~akRFLHPdiva~YDYIfLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd~~-S~ish~iT-~R 299 (440)
..|+... +|.|-...+.-+. .+.||||++.|.|..++...++++..+....+..+.|+-+... ..-++ ++ .+
T Consensus 63 i~~~~~~~~~G~k~~a~n~g~~---~a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~-~~~~~ 138 (232)
T cd06437 63 IKHVRRADRTGYKAGALAEGMK---VAKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINANYSL-LTRVQ 138 (232)
T ss_pred eEEEECCCCCCCchHHHHHHHH---hCCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCCCch-hhHhh
Confidence 4555443 3445443343331 2589999999999999988888877776555555555543211 00000 00 00
Q ss_pred cCCcceeeecccCCCCCCCCCCCCccceEEeccccccHHHHHHhhhhhcCCCcceehHHHHhhHhhcCCCCcEEEEeeee
Q 013577 300 RGDREVHKETEEKPGWCSNPHLPPCAAFVEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQW 379 (440)
Q Consensus 300 ~~~~~vHr~~~~~~g~c~~~~~ppcTgFVEIMAPVFSR~Awrcvw~miQNDLvhGWGLDf~w~~Ca~~~~~kIGVVDa~~ 379 (440)
.-....|-.... .+. ....+...+=.++-+|+|++|+.+-.+ ..+ ..+=|+.+...+.....++..++...
T Consensus 139 ~~~~~~~~~~~~-~~~----~~~~~~~~~~g~~~~~rr~~~~~vgg~-~~~---~~~ED~~l~~rl~~~G~~~~~~~~~~ 209 (232)
T cd06437 139 AMSLDYHFTIEQ-VAR----SSTGLFFNFNGTAGVWRKECIEDAGGW-NHD---TLTEDLDLSYRAQLKGWKFVYLDDVV 209 (232)
T ss_pred hhhHHhhhhHhH-hhH----hhcCCeEEeccchhhhhHHHHHHhCCC-CCC---cchhhHHHHHHHHHCCCeEEEeccce
Confidence 000000000000 000 000011111112237999999987554 222 24578777666654567999998888
Q ss_pred EEeeccCCC
Q 013577 380 IVHQTVPSL 388 (440)
Q Consensus 380 VvH~g~PtL 388 (440)
+.|...+++
T Consensus 210 v~~~~~~~~ 218 (232)
T cd06437 210 VPAELPASM 218 (232)
T ss_pred eeeeCCcCH
Confidence 888633333
No 15
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=80.98 E-value=1.3 Score=41.08 Aligned_cols=125 Identities=17% Similarity=0.201 Sum_probs=64.4
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCccCC-CCc-ceeeeeecCCcceeeecccCCCCCCCCCCCCcc
Q 013577 248 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPN-KGL-TWQMTKRRGDREVHKETEEKPGWCSNPHLPPCA 325 (440)
Q Consensus 248 a~YDYIfLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd~~-S~i-sh~iT~R~~~~~vHr~~~~~~g~c~~~~~ppcT 325 (440)
+..|||++.|.|...+...++++++.+++.+.++.....-.. ... .|....+........... .+.......++
T Consensus 92 a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~~----~~~~~~~~d~~ 167 (243)
T PLN02726 92 ASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQ----TLLWPGVSDLT 167 (243)
T ss_pred cCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHHH----HHhCCCCCcCC
Confidence 578999999999999888889999888777766654432111 111 111111100000000000 00000011111
Q ss_pred ceEEeccccccHHHHHHhhhhhcCCCcceehHHHHhhHhhcCCCCcEEEEeeeeEEee
Q 013577 326 AFVEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQ 383 (440)
Q Consensus 326 gFVEIMAPVFSR~Awrcvw~miQNDLvhGWGLDf~w~~Ca~~~~~kIGVVDa~~VvH~ 383 (440)
..+-+|+|++++.+..+...+ .-.+.+|+.+... ....++.-|.-.++.|.
T Consensus 168 ----g~~~~~rr~~~~~i~~~~~~~-~~~~~~el~~~~~--~~g~~i~~vp~~~~~r~ 218 (243)
T PLN02726 168 ----GSFRLYKRSALEDLVSSVVSK-GYVFQMEIIVRAS--RKGYRIEEVPITFVDRV 218 (243)
T ss_pred ----CcccceeHHHHHHHHhhccCC-CcEEehHHHHHHH--HcCCcEEEeCcEEeCCC
Confidence 123379999999886554322 1223444433322 23567887777777664
No 16
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=80.05 E-value=1.2 Score=39.73 Aligned_cols=80 Identities=20% Similarity=0.152 Sum_probs=45.6
Q ss_pred CCcEEEEEEECCCCCcccc-c-ccCC---c-ceEEEeeccccccchhhccCcccccCccEEEEecCccccCCCCHHHHHH
Q 013577 199 DNFTIVLFHYDGRTTEWNE-F-EWSK---R-AIHVSVRKQTKWWYAKRFLHPDIVASYDYIFIWDEDLGVEHFNAEEYIK 272 (440)
Q Consensus 199 ~nFdV~LFhYDG~v~eW~d-~-~Ws~---~-aiHVsa~kqtKWw~akRFLHPdiva~YDYIfLwDDDL~Vd~f~i~ryf~ 272 (440)
.++-|+++. ||+.|+=.+ . +|.. + .++....++++.--.+.-+ -.+..|||++.|+|..++.-.+.++++
T Consensus 26 ~~~eiiiVD-d~S~d~t~~~~~~~~~~~~~i~~~~~~~n~G~~~a~n~g~---~~a~gd~i~~lD~D~~~~~~~l~~l~~ 101 (224)
T cd06442 26 IDYEIIVVD-DNSPDGTAEIVRELAKEYPRVRLIVRPGKRGLGSAYIEGF---KAARGDVIVVMDADLSHPPEYIPELLE 101 (224)
T ss_pred CCeEEEEEe-CCCCCChHHHHHHHHHhCCceEEEecCCCCChHHHHHHHH---HHcCCCEEEEEECCCCCCHHHHHHHHH
Confidence 467777776 777653111 0 1211 1 2223345666644333322 125579999999998887767777777
Q ss_pred HHHHhCCccc
Q 013577 273 LVRKHGLEIS 282 (440)
Q Consensus 273 Ivr~~gLeIS 282 (440)
.+...+..+.
T Consensus 102 ~~~~~~~~~v 111 (224)
T cd06442 102 AQLEGGADLV 111 (224)
T ss_pred HHhcCCCCEE
Confidence 7655555543
No 17
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=80.01 E-value=5.9 Score=36.31 Aligned_cols=178 Identities=16% Similarity=0.186 Sum_probs=90.2
Q ss_pred ccccCCCCCCCCCCCCceEEEEEecccc--ccchHHHHhhhccCCCCccccccccccccccccCCCC-CCcEEEEEEECC
Q 013577 134 LRRLWGNPNEDLTSQPKYLVTFTVGYDQ--KNNINAAIKKVGFCFPPTIFFLCVHLCVTNICSKQFS-DNFTIVLFHYDG 210 (440)
Q Consensus 134 ~r~Lwg~~~~d~~~~~~~Lla~~vG~~q--k~~v~~~v~k~~~~f~~~~~~~~~~~~~~~~~s~~~~-~nFdV~LFhYDG 210 (440)
+|.-||++..-.. .+.-+.|-||... ...+++.+++ =+ ..=||+++.+..
T Consensus 6 IR~TW~~~~~~~~--~~~~~~FvvG~~~~~~~~~~~~l~~-------------------------E~~~y~Dil~~d~~D 58 (195)
T PF01762_consen 6 IRETWGNQRNFKG--VRVKVVFVVGESPNSDSDLQEALQE-------------------------EAEKYGDILQGDFVD 58 (195)
T ss_pred HHHHHhcccccCC--CcEEEEEEEecCCCCcHHHHHHhhh-------------------------hhhhcCceEeeeccc
Confidence 5777997664322 4567778888887 4556776666 12 233788776633
Q ss_pred CCCcccccccCCcceEEEeeccccccchhhccCcccccCccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCccCCC
Q 013577 211 RTTEWNEFEWSKRAIHVSVRKQTKWWYAKRFLHPDIVASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPNK 290 (440)
Q Consensus 211 ~v~eW~d~~Ws~~aiHVsa~kqtKWw~akRFLHPdiva~YDYIfLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd~~S 290 (440)
.+..+. .|--.+-++++ +....++||+..|||+-| ++.++++..++.-.+...+.+. ..
T Consensus 59 ---~y~nlt-------------~K~~~~~~w~~-~~c~~~~~v~k~DDD~~v---n~~~l~~~L~~~~~~~~~~~~~-g~ 117 (195)
T PF01762_consen 59 ---SYRNLT-------------LKTLAGLKWAS-KHCPNAKYVLKVDDDVFV---NPDRLVSFLKSLKQDPSKNSIY-GG 117 (195)
T ss_pred ---ccchhh-------------HHHHHHHHHHH-hhCCchhheeecCcEEEE---ehHHhhhhhhhcccCccccccc-cc
Confidence 222221 12112222221 112358999999999987 4566666666552222222221 11
Q ss_pred CcceeeeeecCCcceeeecccCCCCCCCCCCCCccceEEeccccccHHHHHHhhhhhcCCCcceehHHHHhhHhhcC
Q 013577 291 GLTWQMTKRRGDREVHKETEEKPGWCSNPHLPPCAAFVEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEP 367 (440)
Q Consensus 291 ~ish~iT~R~~~~~vHr~~~~~~g~c~~~~~ppcTgFVEIMAPVFSR~Awrcvw~miQNDLvhGWGLDf~w~~Ca~~ 367 (440)
.....-..|.+..+-+--..+.+ ....|| |....+-++|+++.+.+....+ ....-+-=|-.++.|++.
T Consensus 118 ~~~~~~~~r~~~~kw~v~~~~y~----~~~yP~---y~~G~~yvls~~~v~~i~~~~~-~~~~~~~eDv~iGi~~~~ 186 (195)
T PF01762_consen 118 CIKNGPPIRDPSSKWYVSEEEYP----DDYYPP---YCSGGGYVLSSDVVKRIYKASS-HTPFFPLEDVFIGILAEK 186 (195)
T ss_pred cccCCccccccccCceeeeeecc----cccCCC---cCCCCeEEecHHHHHHHHHHhh-cCCCCCchHHHHHHHHHH
Confidence 11122223333322110000011 122333 3346777899999998777643 322233334445888863
No 18
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=77.96 E-value=12 Score=33.03 Aligned_cols=122 Identities=17% Similarity=0.144 Sum_probs=68.9
Q ss_pred EEEEecCccccCCCCHHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCccee-----eecccCCCCCCCCCCCCccc
Q 013577 252 YIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPNKGLTWQMTKRRGDREVH-----KETEEKPGWCSNPHLPPCAA 326 (440)
Q Consensus 252 YIfLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vH-----r~~~~~~g~c~~~~~ppcTg 326 (440)
||.+.|+|..++.....+..+.++.-+..+.|+...... ....++.-+...... +......|.| .
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~- 70 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRN-RGSLLTRLQDFEYAISHGLSRLSQSSLGRP--------L- 70 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecC-CCChhheeehhhhhhhhhhhHHHHHhcCCC--------c-
Confidence 789999999999988999988888558899998887652 111122222211100 0011111211 1
Q ss_pred eEEeccccccHHHHHHhhhhhcCCCcceehHHHHhhHhhcCCCCcEEEEeeeeEEeeccCC
Q 013577 327 FVEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQTVPS 387 (440)
Q Consensus 327 FVEIMAPVFSR~Awrcvw~miQNDLvhGWGLDf~w~~Ca~~~~~kIGVVDa~~VvH~g~Pt 387 (440)
++=.-.=++++++++.+-.+ ++. --.|=|..+..-+.....+++.++...+ |+..|.
T Consensus 71 ~~~G~~~~~r~~~l~~vg~~--~~~-~~~~ED~~l~~~l~~~G~~~~~~~~~~~-~~~~p~ 127 (193)
T PF13632_consen 71 FLSGSGMLFRREALREVGGF--DDP-FSIGEDMDLGFRLRRAGYRIVYVPDAIV-YTEAPP 127 (193)
T ss_pred cccCcceeeeHHHHHHhCcc--ccc-ccccchHHHHHHHHHCCCEEEEecccce-eeeCCC
Confidence 11122347999999966322 111 1334566655444345589999998844 443443
No 19
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=77.42 E-value=3.8 Score=39.74 Aligned_cols=176 Identities=16% Similarity=0.192 Sum_probs=83.6
Q ss_pred CCCCcEEEEEEECCCCCcccc-c-cc--CCcce-EEEeeccccccchhhccC-cccccCccEEEEecCccccCCCCHHHH
Q 013577 197 FSDNFTIVLFHYDGRTTEWNE-F-EW--SKRAI-HVSVRKQTKWWYAKRFLH-PDIVASYDYIFIWDEDLGVEHFNAEEY 270 (440)
Q Consensus 197 ~~~nFdV~LFhYDG~v~eW~d-~-~W--s~~ai-HVsa~kqtKWw~akRFLH-Pdiva~YDYIfLwDDDL~Vd~f~i~ry 270 (440)
.+.++.|++..+ |+.++|.+ + +. ....+ .|....+.+.|..-+-.. ---.+.-|||+++|-|+.++...++++
T Consensus 31 ~~~~~eiIvvd~-~s~~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~arN~g~~~A~~d~l~flD~D~i~~~~~i~~~ 109 (281)
T PF10111_consen 31 SDPDFEIIVVDD-GSSDEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAKARNIGAKYARGDYLIFLDADCIPSPDFIEKL 109 (281)
T ss_pred CCCCEEEEEEEC-CCchhHHHHHHHHHhccCceEEEEcCCCCCCcCHHHHHHHHHHHcCCCEEEEEcCCeeeCHHHHHHH
Confidence 357899998888 65554411 1 11 22233 223332333333322221 122278999999999999998888888
Q ss_pred HH----HHHHhCCcccCCCccCCCCcceeeeeecCCcceeeecccCCCCCCCCCCCCccc---eEEeccccccHHHHHHh
Q 013577 271 IK----LVRKHGLEISQPGLEPNKGLTWQMTKRRGDREVHKETEEKPGWCSNPHLPPCAA---FVEIMAPVFSRDAWRCV 343 (440)
Q Consensus 271 f~----Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~c~~~~~ppcTg---FVEIMAPVFSR~Awrcv 343 (440)
++ +.+....-+.=|.+.-+...+-.+.... ....+....+ ..+. ..-++.+ ++- -+=+++|+.+..+
T Consensus 110 ~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~~~~~~~s-~~~~i~r~~f~~i 183 (281)
T PF10111_consen 110 LNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQF-KNLWDHEFLE--SFIS--GKNSLWEFIAFAS-SCFLINREDFLEI 183 (281)
T ss_pred HHHHHHHhcCCCceEEEeeeeccchhhHHHhhcc-hhcchHHHHH--HHhh--ccccccccccccc-eEEEEEHHHHHHh
Confidence 88 2221111222232211111111111110 0011110000 0000 0001111 111 3447899999988
Q ss_pred hhhhcCCCcceehH---HHHhhHhhcCCCCcEEEEeeeeEEee
Q 013577 344 WHMIQNDLVHGWGL---DFALRKCVEPAHEKIGVVDSQWIVHQ 383 (440)
Q Consensus 344 w~miQNDLvhGWGL---Df~w~~Ca~~~~~kIGVVDa~~VvH~ 383 (440)
=.+ ++.-.|||. ||.++ +.....++-..+...+.|.
T Consensus 184 GGf--DE~f~G~G~ED~D~~~R--L~~~~~~~~~~~~~~~~~~ 222 (281)
T PF10111_consen 184 GGF--DERFRGWGYEDIDFGYR--LKKAGYKFKRSPDYLVYHS 222 (281)
T ss_pred CCC--CccccCCCcchHHHHHH--HHHcCCcEecChHHhcccc
Confidence 665 566789986 45554 3323455656666666564
No 20
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=76.30 E-value=1.4 Score=39.44 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=26.0
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHHhCCccc
Q 013577 248 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEIS 282 (440)
Q Consensus 248 a~YDYIfLwDDDL~Vd~f~i~ryf~Ivr~~gLeIS 282 (440)
+..|||++.|.|...+.-.+.++++.+...+..+.
T Consensus 81 a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v 115 (211)
T cd04188 81 ARGDYILFADADLATPFEELEKLEEALKTSGYDIA 115 (211)
T ss_pred hcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEE
Confidence 45699999999988887777777777555554443
No 21
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=74.80 E-value=2 Score=37.65 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=32.3
Q ss_pred cccHHHHHHhhhhhcCCCcceehHHHHhhHhhcCCCCcEEEEeeeeEEee
Q 013577 334 VFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQ 383 (440)
Q Consensus 334 VFSR~Awrcvw~miQNDLvhGWGLDf~w~~Ca~~~~~kIGVVDa~~VvH~ 383 (440)
+|+|++++.+-.+.. + ..|+-|+.+..++.. ..++.+++...+.|+
T Consensus 158 ~~r~~~~~~~~~~~~-~--~~~~~D~~~~~~~~~-~~~~~~~~~~~~~~r 203 (214)
T cd04196 158 AFNRELLELALPFPD-A--DVIMHDWWLALLASA-FGKVVFLDEPLILYR 203 (214)
T ss_pred eEEHHHHHhhccccc-c--ccccchHHHHHHHHH-cCceEEcchhHHHHh
Confidence 799999998866532 2 167778766666543 458888888777665
No 22
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=71.64 E-value=5.1 Score=36.14 Aligned_cols=128 Identities=13% Similarity=-0.054 Sum_probs=64.0
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcceeeecccCCCCCCCCCCCCccce
Q 013577 248 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPNKGLTWQMTKRRGDREVHKETEEKPGWCSNPHLPPCAAF 327 (440)
Q Consensus 248 a~YDYIfLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~c~~~~~ppcTgF 327 (440)
+.+|||++.|+|..++...+.+.+..+.+....+.-+.......-.+.- ..+....+..... .......++ |++
T Consensus 83 a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~-~~~-- 156 (219)
T cd06913 83 SSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQVRRIPEDSTER-YTRWINTLTREQL--LTQVYTSHG-PTV-- 156 (219)
T ss_pred cCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEEEEecCcccchh-hHHHHHhcCHHHH--HHHHHhhcC-Ccc--
Confidence 6899999999999999988888877776654322222211100000000 0000000000000 000000111 111
Q ss_pred EEeccccccHHHHHHhhhhhcCCCcceehHHHHhhHhhcCCCCcEEEEeeeeEEeec
Q 013577 328 VEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQT 384 (440)
Q Consensus 328 VEIMAPVFSR~Awrcvw~miQNDLvhGWGLDf~w~~Ca~~~~~kIGVVDa~~VvH~g 384 (440)
-+-.-+++|++|+.+=.+- +..-+++=|+.+.+.+.....+|.-+|...+.++.
T Consensus 157 -~~~~~~~rr~~~~~~g~f~--~~~~~~~eD~~l~~r~~~~g~~i~~~~~~~~~yr~ 210 (219)
T cd06913 157 -IMPTWFCSREWFSHVGPFD--EGGKGVPEDLLFFYEHLRKGGGVYRVDRCLLLYRY 210 (219)
T ss_pred -ccccceeehhHHhhcCCcc--chhccchhHHHHHHHHHHcCCceEEEcceeeeeee
Confidence 0111257999999775542 22235567876665543345789999987777654
No 23
>PRK11204 N-glycosyltransferase; Provisional
Probab=67.27 E-value=48 Score=33.53 Aligned_cols=172 Identities=13% Similarity=0.052 Sum_probs=84.5
Q ss_pred CCcEEEEEEECCCCCcccc-c-ccCCc--ceEEE--eeccccccchhhccCcccccCccEEEEecCccccCCCCHHHHHH
Q 013577 199 DNFTIVLFHYDGRTTEWNE-F-EWSKR--AIHVS--VRKQTKWWYAKRFLHPDIVASYDYIFIWDEDLGVEHFNAEEYIK 272 (440)
Q Consensus 199 ~nFdV~LFhYDG~v~eW~d-~-~Ws~~--aiHVs--a~kqtKWw~akRFLHPdiva~YDYIfLwDDDL~Vd~f~i~ryf~ 272 (440)
++++|++.. ||+.|+=.+ . ++..+ -+++. ..+++|=...+.-+. .+.||||++.|.|..++...++++.+
T Consensus 82 p~~eiiVvd-D~s~d~t~~~l~~~~~~~~~v~~i~~~~n~Gka~aln~g~~---~a~~d~i~~lDaD~~~~~d~L~~l~~ 157 (420)
T PRK11204 82 PNYEVIAIN-DGSSDNTGEILDRLAAQIPRLRVIHLAENQGKANALNTGAA---AARSEYLVCIDGDALLDPDAAAYMVE 157 (420)
T ss_pred CCeEEEEEE-CCCCccHHHHHHHHHHhCCcEEEEEcCCCCCHHHHHHHHHH---HcCCCEEEEECCCCCCChhHHHHHHH
Confidence 368887665 577654211 0 01111 13333 335566444443331 26799999999999999888888888
Q ss_pred HHHH-hCCcccCC--CccCCC-CcceeeeeecCC-cceeeecccCCCCCCCCCCCCccceEEeccccccHHHHHHhhhhh
Q 013577 273 LVRK-HGLEISQP--GLEPNK-GLTWQMTKRRGD-REVHKETEEKPGWCSNPHLPPCAAFVEIMAPVFSRDAWRCVWHMI 347 (440)
Q Consensus 273 Ivr~-~gLeISQP--ALd~~S-~ish~iT~R~~~-~~vHr~~~~~~g~c~~~~~ppcTgFVEIMAPVFSR~Awrcvw~mi 347 (440)
.+++ .+..+.|. ...... .+.+..+..-.. ..+.++.....|. ...+-.++-+|+|++++.+=.+
T Consensus 158 ~~~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~G~~~~~rr~~l~~vgg~- 227 (420)
T PRK11204 158 HFLHNPRVGAVTGNPRIRNRSTLLGRIQVGEFSSIIGLIKRAQRVYGR---------VFTVSGVITAFRKSALHEVGYW- 227 (420)
T ss_pred HHHhCCCeEEEECCceeccchhHHHHHHHHHHHHhhhHHHHHHHHhCC---------ceEecceeeeeeHHHHHHhCCC-
Confidence 8753 33444432 221110 000000000000 0000000000010 0112233457999999876333
Q ss_pred cCCCcceehHHHHhhHhhcCCCCcEEEEeeeeEEeeccCC
Q 013577 348 QNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQTVPS 387 (440)
Q Consensus 348 QNDLvhGWGLDf~w~~Ca~~~~~kIGVVDa~~VvH~g~Pt 387 (440)
..+.. +=|+.+..-+.....++..+....+.|..-++
T Consensus 228 ~~~~~---~ED~~l~~rl~~~G~~i~~~p~~~~~~~~p~t 264 (420)
T PRK11204 228 STDMI---TEDIDISWKLQLRGWDIRYEPRALCWILMPET 264 (420)
T ss_pred CCCcc---cchHHHHHHHHHcCCeEEeccccEEEeECccc
Confidence 22222 34666665555556788888887777753333
No 24
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=67.12 E-value=2.9 Score=38.22 Aligned_cols=40 Identities=8% Similarity=0.013 Sum_probs=31.9
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCcc
Q 013577 248 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLE 287 (440)
Q Consensus 248 a~YDYIfLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd 287 (440)
+..|||++.|+|..++...+.++++.++..+..+.++...
T Consensus 108 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~ 147 (251)
T cd06439 108 ATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELV 147 (251)
T ss_pred cCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEE
Confidence 4569999999999999888888888887666666666554
No 25
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=66.82 E-value=5.4 Score=40.15 Aligned_cols=198 Identities=13% Similarity=0.169 Sum_probs=100.2
Q ss_pred ceEEEEEeccccccchHHHHhhhccCCCCccccccccccccccccCCCCCCcEEEEEEECCCCCcccc--cccCCc----
Q 013577 150 KYLVTFTVGYDQKNNINAAIKKVGFCFPPTIFFLCVHLCVTNICSKQFSDNFTIVLFHYDGRTTEWNE--FEWSKR---- 223 (440)
Q Consensus 150 ~~Lla~~vG~~qk~~v~~~v~k~~~~f~~~~~~~~~~~~~~~~~s~~~~~nFdV~LFhYDG~v~eW~d--~~Ws~~---- 223 (440)
.--+.+| -++..+++.++++..- -+...+.......++.|+ +.=||+.|+=.+ -++.++
T Consensus 71 ~isVVIP-~yNe~~~i~~~L~~l~-------------~~~~~~~~~~~~~~~EII-VVDDgStD~T~~i~~~~~~~~~~~ 135 (333)
T PTZ00260 71 DLSIVIP-AYNEEDRLPKMLKETI-------------KYLESRSRKDPKFKYEII-IVNDGSKDKTLKVAKDFWRQNINP 135 (333)
T ss_pred EEEEEEe-eCCCHHHHHHHHHHHH-------------HHHHhhhccCCCCCEEEE-EEeCCCCCchHHHHHHHHHhcCCC
Confidence 3444444 4777777887777610 000111111112356666 456888864111 111111
Q ss_pred --ceEEE--eeccccccchhhccCcccccCccEEEEecCccccCCCCHHHHHHHHHH---hCCcccCCCccC--CC-Cc-
Q 013577 224 --AIHVS--VRKQTKWWYAKRFLHPDIVASYDYIFIWDEDLGVEHFNAEEYIKLVRK---HGLEISQPGLEP--NK-GL- 292 (440)
Q Consensus 224 --aiHVs--a~kqtKWw~akRFLHPdiva~YDYIfLwDDDL~Vd~f~i~ryf~Ivr~---~gLeISQPALd~--~S-~i- 292 (440)
-+++. .++++|-.-.+.=+. .+..|||++.|.|...+..++.++++.+++ .+.++..-.... ++ ..
T Consensus 136 ~~~i~vi~~~~N~G~~~A~~~Gi~---~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~ 212 (333)
T PTZ00260 136 NIDIRLLSLLRNKGKGGAVRIGML---ASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVA 212 (333)
T ss_pred CCcEEEEEcCCCCChHHHHHHHHH---HccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccc
Confidence 14443 346676654443331 267899999999999999999999998875 444443332211 11 00
Q ss_pred ceeeeeecCCcceeeecccCCCCCCCCCCCCccceEEeccc--cccHHHHHHhhhhhcCCCcceehHHHHhhHhhcCCCC
Q 013577 293 TWQMTKRRGDREVHKETEEKPGWCSNPHLPPCAAFVEIMAP--VFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHE 370 (440)
Q Consensus 293 sh~iT~R~~~~~vHr~~~~~~g~c~~~~~ppcTgFVEIMAP--VFSR~Awrcvw~miQNDLvhGWGLDf~w~~Ca~~~~~ 370 (440)
.....++--...+|.... ...+ +++-+.++. +|+|++++.+.+.+ ...+|+.|.-+...+...+.
T Consensus 213 ~~~~~r~~~~~~~~~l~~----~~~~------~~i~D~~~Gfk~~~r~~~~~i~~~~---~~~~~~fd~Ell~~a~~~g~ 279 (333)
T PTZ00260 213 KRKWYRNILMYGFHFIVN----TICG------TNLKDTQCGFKLFTRETARIIFPSL---HLERWAFDIEIVMIAQKLNL 279 (333)
T ss_pred cCcHHHHHHHHHHHHHHH----HHcC------CCcccCCCCeEEEeHHHHHHHhhhc---cccCccchHHHHHHHHHcCC
Confidence 101111111111111100 0000 123333443 89999999775432 23588888877777764444
Q ss_pred cEEEEeee
Q 013577 371 KIGVVDSQ 378 (440)
Q Consensus 371 kIGVVDa~ 378 (440)
+|.-|--.
T Consensus 280 ~I~EvPv~ 287 (333)
T PTZ00260 280 PIAEVPVN 287 (333)
T ss_pred CEEEEcee
Confidence 55544333
No 26
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=66.41 E-value=4.9 Score=32.86 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=30.4
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCc
Q 013577 248 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGL 286 (440)
Q Consensus 248 a~YDYIfLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPAL 286 (440)
+..|||++.|||..++.-.++++++.+++++-.+.-+..
T Consensus 77 a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~ 115 (169)
T PF00535_consen 77 AKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSV 115 (169)
T ss_dssp --SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEE
T ss_pred cceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEE
Confidence 667799999999999999999999999997775544433
No 27
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=65.13 E-value=7.7 Score=30.68 Aligned_cols=22 Identities=23% Similarity=0.096 Sum_probs=19.3
Q ss_pred CccEEEEecCccccCCCCHHHH
Q 013577 249 SYDYIFIWDEDLGVEHFNAEEY 270 (440)
Q Consensus 249 ~YDYIfLwDDDL~Vd~f~i~ry 270 (440)
.+||+++.|+|..++...+.++
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~ 98 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERL 98 (156)
T ss_pred cCCEEEEECCCCccCccHHHHH
Confidence 6999999999999888777776
No 28
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=64.49 E-value=3.8 Score=36.82 Aligned_cols=85 Identities=12% Similarity=0.020 Sum_probs=56.2
Q ss_pred CcEEEEEEECCCCCcccc----cccCCcceEEEeeccccccchhhccCcccccCccEEEEecCccccCCCCHHHHHHHHH
Q 013577 200 NFTIVLFHYDGRTTEWNE----FEWSKRAIHVSVRKQTKWWYAKRFLHPDIVASYDYIFIWDEDLGVEHFNAEEYIKLVR 275 (440)
Q Consensus 200 nFdV~LFhYDG~v~eW~d----~~Ws~~aiHVsa~kqtKWw~akRFLHPdiva~YDYIfLwDDDL~Vd~f~i~ryf~Ivr 275 (440)
++.|++. =||+.++=.+ ........++...+++|-.....-+ -.+.+|||++.|+|..++...++++++.+.
T Consensus 28 ~~eiivv-dd~s~d~~~~~l~~~~~~~~~~v~~~~~~g~~~a~n~g~---~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 28 PLEIIVV-TDGDDEPYLSILSQTVKYGGIFVITVPHPGKRRALAEGI---RHVTTDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred CCEEEEE-eCCCChHHHHHHHhhccCCcEEEEecCCCChHHHHHHHH---HHhCCCEEEEECCCceeChhHHHHHHHhcc
Confidence 6777655 4676653111 1222334455555666654433322 125799999999999999999999999988
Q ss_pred HhCCcccCCCccC
Q 013577 276 KHGLEISQPGLEP 288 (440)
Q Consensus 276 ~~gLeISQPALd~ 288 (440)
..+..+.++....
T Consensus 104 ~~~v~~v~~~~~~ 116 (235)
T cd06434 104 DPKVGGVGTNQRI 116 (235)
T ss_pred CCCEeEEcCceEe
Confidence 7788888877644
No 29
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=59.41 E-value=24 Score=30.26 Aligned_cols=27 Identities=26% Similarity=0.193 Sum_probs=20.7
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHH
Q 013577 248 ASYDYIFIWDEDLGVEHFNAEEYIKLV 274 (440)
Q Consensus 248 a~YDYIfLwDDDL~Vd~f~i~ryf~Iv 274 (440)
+.+|||+++|+|..++...+.+.++.+
T Consensus 78 a~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 78 AKGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred hcCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 679999999999988765566655543
No 30
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=56.81 E-value=6.3 Score=35.68 Aligned_cols=123 Identities=12% Similarity=-0.075 Sum_probs=64.9
Q ss_pred CccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcceeeecccCCCCCCCCCCCCccceE
Q 013577 249 SYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPNKGLTWQMTKRRGDREVHKETEEKPGWCSNPHLPPCAAFV 328 (440)
Q Consensus 249 ~YDYIfLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~c~~~~~ppcTgFV 328 (440)
.||||++.|+|..++.-.+.++++.++..+..+.++.......-...+.... ...... .......+. +...+ .++
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~--~~~~~-~~~ 158 (236)
T cd06435 84 DAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAPQDYRDGEESLFKRMC-YAEYKG-FFDIGMVSR--NERNA-IIQ 158 (236)
T ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecCccccCCCccHHHHHH-hHHHHH-HHHHHhccc--cccCc-eEE
Confidence 4999999999999999889999888876677776653321111000010000 000000 000000000 00111 122
Q ss_pred EeccccccHHHHHHhhhhhcCCCcceehHHHHhhHhhcCCCCcEEEEeeeeE
Q 013577 329 EIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWI 380 (440)
Q Consensus 329 EIMAPVFSR~Awrcvw~miQNDLvhGWGLDf~w~~Ca~~~~~kIGVVDa~~V 380 (440)
-..+-+|+|++++.+=.+ ..+. -+=|+.+..-+.....++..++...+
T Consensus 159 ~g~~~~~rr~~~~~iGgf-~~~~---~~eD~dl~~r~~~~G~~~~~~~~~~~ 206 (236)
T cd06435 159 HGTMCLIRRSALDDVGGW-DEWC---ITEDSELGLRMHEAGYIGVYVAQSYG 206 (236)
T ss_pred ecceEEEEHHHHHHhCCC-CCcc---ccchHHHHHHHHHCCcEEEEcchhhc
Confidence 222347999999987443 2222 24477777666555678888876444
No 31
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=56.64 E-value=26 Score=31.06 Aligned_cols=84 Identities=14% Similarity=0.065 Sum_probs=48.1
Q ss_pred CCcEEEEEEECCCCCcccccccCCcceEEEeeccccccchhhccCcccccCccEEEEecCccccCCCCHHHHHHHHHHhC
Q 013577 199 DNFTIVLFHYDGRTTEWNEFEWSKRAIHVSVRKQTKWWYAKRFLHPDIVASYDYIFIWDEDLGVEHFNAEEYIKLVRKHG 278 (440)
Q Consensus 199 ~nFdV~LFhYDG~v~eW~d~~Ws~~aiHVsa~kqtKWw~akRFLHPdiva~YDYIfLwDDDL~Vd~f~i~ryf~Ivr~~g 278 (440)
.++.|+++ -||..++=.+.-=.. -+++...++++-.....-+. .+.+|||++.|+|..++...+++++......+
T Consensus 27 ~~~evivv-dd~s~d~~~~~~~~~-~~~~~~~~~g~~~a~n~g~~---~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~ 101 (221)
T cd02522 27 LPLEIIVV-DGGSTDGTVAIARSA-GVVVISSPKGRARQMNAGAA---AARGDWLLFLHADTRLPPDWDAAIIETLRADG 101 (221)
T ss_pred CCcEEEEE-eCCCCccHHHHHhcC-CeEEEeCCcCHHHHHHHHHH---hccCCEEEEEcCCCCCChhHHHHHHHHhhcCC
Confidence 56787766 556654311111012 23334444444222221121 24589999999999999888888877776666
Q ss_pred CcccCCCcc
Q 013577 279 LEISQPGLE 287 (440)
Q Consensus 279 LeISQPALd 287 (440)
..++.+...
T Consensus 102 ~~~~~~~~~ 110 (221)
T cd02522 102 AVAGAFRLR 110 (221)
T ss_pred cEEEEEEee
Confidence 665555443
No 32
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=56.03 E-value=6.1 Score=32.38 Aligned_cols=17 Identities=47% Similarity=0.911 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhhheeee
Q 013577 32 LIVTTFVGVVFGFFIGV 48 (440)
Q Consensus 32 ~~~~~~~~~~~g~~~g~ 48 (440)
+|++.++|++.|||++-
T Consensus 3 iilali~G~~~Gff~ar 19 (64)
T PF03672_consen 3 IILALIVGAVIGFFIAR 19 (64)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47888899999999864
No 33
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=55.90 E-value=5.8 Score=36.43 Aligned_cols=121 Identities=20% Similarity=0.194 Sum_probs=70.3
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHH--hCCcccCCCccCCCCc-ceeeeeecCCcceeeecccCCCCCCCCCCCCc
Q 013577 248 ASYDYIFIWDEDLGVEHFNAEEYIKLVRK--HGLEISQPGLEPNKGL-TWQMTKRRGDREVHKETEEKPGWCSNPHLPPC 324 (440)
Q Consensus 248 a~YDYIfLwDDDL~Vd~f~i~ryf~Ivr~--~gLeISQPALd~~S~i-sh~iT~R~~~~~vHr~~~~~~g~c~~~~~ppc 324 (440)
+.||||++.|+|+.++.-.+.++..-... .|+-=+.|-..+..++ ++- ..-....|..... ...=
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~~~~l---~~~~~~~~~~~~~---------a~~~ 97 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGFWSRL---EAAFFNFLPGVLQ---------ALGG 97 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCHHHHH---HHHHHhHHHHHHH---------HhcC
Confidence 89999999999999998877777765554 3332222222222211 000 0000011100000 0012
Q ss_pred cceEEeccccccHHHHHHhhhhhcCCCcceehHHHHhhHhhcCCCCcEEEEeeeeEEee
Q 013577 325 AAFVEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQ 383 (440)
Q Consensus 325 TgFVEIMAPVFSR~Awrcvw~miQNDLvhGWGLDf~w~~Ca~~~~~kIGVVDa~~VvH~ 383 (440)
+.|+=.|+=.|+|++++..=. + +.+.+...=||.++..+.....+|...... |+|+
T Consensus 98 ~~~~~G~~m~~rr~~L~~~GG-~-~~l~~~ladD~~l~~~~~~~G~~v~~~~~~-v~~~ 153 (175)
T PF13506_consen 98 APFAWGGSMAFRREALEEIGG-F-EALADYLADDYALGRRLRARGYRVVLSPYP-VVQT 153 (175)
T ss_pred CCceecceeeeEHHHHHHccc-H-HHHhhhhhHHHHHHHHHHHCCCeEEEcchh-eeec
Confidence 567888888999999997522 1 244456667999999988777788776643 4454
No 34
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=53.59 E-value=27 Score=33.41 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=21.5
Q ss_pred cCccEEEEecCccccCCCC-HHHHHHHH
Q 013577 248 ASYDYIFIWDEDLGVEHFN-AEEYIKLV 274 (440)
Q Consensus 248 a~YDYIfLwDDDL~Vd~f~-i~ryf~Iv 274 (440)
+.++|+++..||+.+.+.+ +.+.+++.
T Consensus 53 a~~~ylvflHqDv~i~~~~~l~~il~~~ 80 (217)
T PF13712_consen 53 AKAKYLVFLHQDVFIINENWLEDILEIF 80 (217)
T ss_dssp --SSEEEEEETTEE-SSHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCeEEcchhHHHHHHHHH
Confidence 7899999999999998766 78888888
No 35
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=48.03 E-value=11 Score=36.77 Aligned_cols=123 Identities=20% Similarity=0.142 Sum_probs=55.0
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcceeeecccCCCCCCCCCCCCccce
Q 013577 248 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPNKGLTWQMTKRRGDREVHKETEEKPGWCSNPHLPPCAAF 327 (440)
Q Consensus 248 a~YDYIfLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~c~~~~~ppcTgF 327 (440)
..+||+++.|||.-| +++++.++...|+- +||-.=...+..++++.. |+--. ......+-.|
T Consensus 85 ~~~~Wf~~~DDDtyv---~~~~L~~~L~~~~~--~~~~yiG~~~~~~~~~~~------~~~~~-------~~~~~~~~~f 146 (252)
T PF02434_consen 85 SDKDWFCFADDDTYV---NVENLRRLLSKYDP--SEPIYIGRPSGDRPIEII------HRFNP-------NKSKDSGFWF 146 (252)
T ss_dssp HT-SEEEEEETTEEE----HHHHHHHHTTS-T--TS--EEE-EE-----------------------------------E
T ss_pred CCceEEEEEeCCcee---cHHHHHHHHhhCCC--ccCEEeeeeccCccceee------ccccc-------cccCcCceEe
Confidence 468999999999986 67777777776542 343221111111111110 10000 0001112346
Q ss_pred EEecc-ccccHHHHHHhhh------hhcCCCcceehHHHHhhHhhcCCCCcEEEEeeeeEEeeccCCCCC
Q 013577 328 VEIMA-PVFSRDAWRCVWH------MIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQTVPSLGN 390 (440)
Q Consensus 328 VEIMA-PVFSR~Awrcvw~------miQNDLvhGWGLDf~w~~Ca~~~~~kIGVVDa~~VvH~g~PtLG~ 390 (440)
.-..| -|+||.+.+.+-+ +.+.+..-.+.=|..+++|++.- -+|-.+++ .-.|.-+|.|..
T Consensus 147 ~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~-lgv~lt~s-~~fhs~~~~l~~ 214 (252)
T PF02434_consen 147 ATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENL-LGVPLTHS-PLFHSHLENLQD 214 (252)
T ss_dssp E-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHT-T---EEE--TT---SSS-GGG
T ss_pred eCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhc-CCcceeec-hhhcccCccccc
Confidence 66655 3899999997732 22223333567899999999731 34444554 556777787653
No 36
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=45.99 E-value=85 Score=32.66 Aligned_cols=74 Identities=14% Similarity=0.122 Sum_probs=46.1
Q ss_pred CCcEEEEEEECCCCCccccc--ccCC--cceEEEe--eccccccchhhccCcccccCccEEEEecCccccCCCCHHHHHH
Q 013577 199 DNFTIVLFHYDGRTTEWNEF--EWSK--RAIHVSV--RKQTKWWYAKRFLHPDIVASYDYIFIWDEDLGVEHFNAEEYIK 272 (440)
Q Consensus 199 ~nFdV~LFhYDG~v~eW~d~--~Ws~--~aiHVsa--~kqtKWw~akRFLHPdiva~YDYIfLwDDDL~Vd~f~i~ryf~ 272 (440)
++++|++.. ||+.|+..+. ++.. ..+++.. .+++|=.-.+.-+. .+.||||.+.|.|-.++...+.++.+
T Consensus 103 p~~eIivVd-Dgs~D~t~~~~~~~~~~~~~v~vv~~~~n~Gka~AlN~gl~---~a~~d~iv~lDAD~~~~~d~L~~lv~ 178 (444)
T PRK14583 103 TNIEVIAIN-DGSSDDTAQVLDALLAEDPRLRVIHLAHNQGKAIALRMGAA---AARSEYLVCIDGDALLDKNAVPYLVA 178 (444)
T ss_pred CCeEEEEEE-CCCCccHHHHHHHHHHhCCCEEEEEeCCCCCHHHHHHHHHH---hCCCCEEEEECCCCCcCHHHHHHHHH
Confidence 368977654 8888764321 1111 1233333 46666544444331 26799999999999998888888877
Q ss_pred HHHH
Q 013577 273 LVRK 276 (440)
Q Consensus 273 Ivr~ 276 (440)
-+.+
T Consensus 179 ~~~~ 182 (444)
T PRK14583 179 PLIA 182 (444)
T ss_pred HHHh
Confidence 6543
No 37
>PRK01844 hypothetical protein; Provisional
Probab=44.67 E-value=12 Score=31.44 Aligned_cols=16 Identities=44% Similarity=0.858 Sum_probs=12.0
Q ss_pred HHHHHHHHHhhheeee
Q 013577 33 IVTTFVGVVFGFFIGV 48 (440)
Q Consensus 33 ~~~~~~~~~~g~~~g~ 48 (440)
|++.++|++.|||++-
T Consensus 11 I~~li~G~~~Gff~ar 26 (72)
T PRK01844 11 VVALVAGVALGFFIAR 26 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6677788888888753
No 38
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=44.53 E-value=28 Score=34.10 Aligned_cols=78 Identities=14% Similarity=0.208 Sum_probs=46.8
Q ss_pred CCcEEEEEEECCCCCcccccccCCcceEEEeeccccccchhhccCcccccCccEEEEecCccccCCCCHHHHHHHHHHh
Q 013577 199 DNFTIVLFHYDGRTTEWNEFEWSKRAIHVSVRKQTKWWYAKRFLHPDIVASYDYIFIWDEDLGVEHFNAEEYIKLVRKH 277 (440)
Q Consensus 199 ~nFdV~LFhYDG~v~eW~d~~Ws~~aiHVsa~kqtKWw~akRFLHPdiva~YDYIfLwDDDL~Vd~f~i~ryf~Ivr~~ 277 (440)
+.-.=+++.+-+...--...+|.+..+-|....+.+=-.-.||+..+. -.=|+|+..|||+.++..+++.-|+.-+++
T Consensus 26 ~~l~~IvVvWn~~~~~P~~~~~~~~~vpV~~~~~~~nsLnnRF~p~~~-i~T~AVl~~DDDv~~~~~~l~faF~~W~~~ 103 (247)
T PF09258_consen 26 PSLRKIVVVWNNPNPPPPSSKWPSTGVPVRVVRSSRNSLNNRFLPDPE-IETDAVLSLDDDVMLSCDELEFAFQVWREF 103 (247)
T ss_dssp TTEEEEEEEEE-TS--THHHHHT---S-EEEEEESSHHGGGGGS--TT---SSEEEEEETTEEE-HHHHHHHHHHHCCS
T ss_pred CCCCeEEEEeCCCCCCCcccccCCCCceEEEEecCCccHHhcCcCccc-cCcceEEEecCCcccCHHHHHHHHHHHHhC
Confidence 344545555644222212245666667777777777777788874332 447999999999999999999888887744
No 39
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=42.44 E-value=16 Score=29.65 Aligned_cols=54 Identities=15% Similarity=0.032 Sum_probs=33.4
Q ss_pred ccccccchhhccCcccccCccEEEEecCccccCCCCHHHH-HHHHHHhCCcccCCCcc
Q 013577 231 KQTKWWYAKRFLHPDIVASYDYIFIWDEDLGVEHFNAEEY-IKLVRKHGLEISQPGLE 287 (440)
Q Consensus 231 kqtKWw~akRFLHPdiva~YDYIfLwDDDL~Vd~f~i~ry-f~Ivr~~gLeISQPALd 287 (440)
+++|-.-.+..+.- ..+|||++.|+|..++...+.++ ..+.+..+..+..+...
T Consensus 63 ~~g~~~~~n~~~~~---~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~ 117 (180)
T cd06423 63 NGGKAGALNAGLRH---AKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVR 117 (180)
T ss_pred cCCchHHHHHHHHh---cCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEE
Confidence 44554444444421 37999999999998887777777 34444444444444443
No 40
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=41.92 E-value=70 Score=32.15 Aligned_cols=107 Identities=18% Similarity=0.279 Sum_probs=64.2
Q ss_pred ceEEEEEeccccccchHHHHhhhccCCCCccccccccccccccccCCCCCCcEEEEEEECCCCCccccc--cc----CCc
Q 013577 150 KYLVTFTVGYDQKNNINAAIKKVGFCFPPTIFFLCVHLCVTNICSKQFSDNFTIVLFHYDGRTTEWNEF--EW----SKR 223 (440)
Q Consensus 150 ~~Lla~~vG~~qk~~v~~~v~k~~~~f~~~~~~~~~~~~~~~~~s~~~~~nFdV~LFhYDG~v~eW~d~--~W----s~~ 223 (440)
+.-+.+| -+++.+++.+++++.- ... ++...+|.|++ .=||+.|+-.+. ++ ..+
T Consensus 7 ~vSVVIP-~yNE~~~i~~~l~~l~-----------------~~~-~~~~~~~EIIv-VDDgS~D~T~~il~~~~~~~~~~ 66 (325)
T PRK10714 7 KVSVVIP-VYNEQESLPELIRRTT-----------------AAC-ESLGKEYEILL-IDDGSSDNSAEMLVEAAQAPDSH 66 (325)
T ss_pred eEEEEEc-ccCchhhHHHHHHHHH-----------------HHH-HhCCCCEEEEE-EeCCCCCcHHHHHHHHHhhcCCc
Confidence 3334444 5788888888877610 000 01234677764 467888764331 11 122
Q ss_pred ceEE-Eeeccccccchhhcc-CcccccCccEEEEecCccccCCCCHHHHHHHHHHhCCcc
Q 013577 224 AIHV-SVRKQTKWWYAKRFL-HPDIVASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEI 281 (440)
Q Consensus 224 aiHV-sa~kqtKWw~akRFL-HPdiva~YDYIfLwDDDL~Vd~f~i~ryf~Ivr~~gLeI 281 (440)
.+++ ..++.+|..-.+.=+ | +.+|||++.|.|+..+...+.++++.++ .|.++
T Consensus 67 v~~i~~~~n~G~~~A~~~G~~~----A~gd~vv~~DaD~q~~p~~i~~l~~~~~-~~~Dv 121 (325)
T PRK10714 67 IVAILLNRNYGQHSAIMAGFSH----VTGDLIITLDADLQNPPEEIPRLVAKAD-EGYDV 121 (325)
T ss_pred EEEEEeCCCCCHHHHHHHHHHh----CCCCEEEEECCCCCCCHHHHHHHHHHHH-hhCCE
Confidence 3333 244556655443323 3 5799999999999999999999999875 34443
No 41
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=38.92 E-value=25 Score=30.79 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=29.6
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHH-HHhCCcccCC
Q 013577 248 ASYDYIFIWDEDLGVEHFNAEEYIKLV-RKHGLEISQP 284 (440)
Q Consensus 248 a~YDYIfLwDDDL~Vd~f~i~ryf~Iv-r~~gLeISQP 284 (440)
+.+|||++.|+|..++.-.++++++.+ +..+..+..+
T Consensus 82 a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~ 119 (202)
T cd04184 82 ATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYS 119 (202)
T ss_pred hcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEc
Confidence 568999999999999888889998887 5555655544
No 42
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=38.04 E-value=26 Score=31.01 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=28.9
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCC
Q 013577 248 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPG 285 (440)
Q Consensus 248 a~YDYIfLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPA 285 (440)
+.+|||++.|+|..++.-.++++++.+.+.+-...+.+
T Consensus 81 ~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 118 (229)
T cd04192 81 AKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGP 118 (229)
T ss_pred hcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeee
Confidence 56999999999999988888888886666554444333
No 43
>PRK11677 hypothetical protein; Provisional
Probab=35.96 E-value=19 Score=33.08 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=11.7
Q ss_pred HHHHHHHHHhhheeeeccc
Q 013577 33 IVTTFVGVVFGFFIGVSFP 51 (440)
Q Consensus 33 ~~~~~~~~~~g~~~g~s~p 51 (440)
++..++|+++|||+|-..+
T Consensus 7 ~i~livG~iiG~~~~R~~~ 25 (134)
T PRK11677 7 LIGLVVGIIIGAVAMRFGN 25 (134)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 4556667777777765443
No 44
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=35.84 E-value=72 Score=36.14 Aligned_cols=104 Identities=22% Similarity=0.239 Sum_probs=51.8
Q ss_pred CccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCccCCCCcce-eeeeecCCcceeeecccCCCCCCCCCCCCccce
Q 013577 249 SYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPNKGLTW-QMTKRRGDREVHKETEEKPGWCSNPHLPPCAAF 327 (440)
Q Consensus 249 ~YDYIfLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd~~S~ish-~iT~R~~~~~vHr~~~~~~g~c~~~~~ppcTgF 327 (440)
..+||+--|||+-|... ++++..++.. ..+ .|=.. ++.+ .--.|.+.++-+=.-.+.+ ....|||
T Consensus 475 ~akFilK~DDDvFVnv~---~Ll~~L~~~~--~~~-~Ly~G-~v~~~~~PiRd~~sKWYVs~~eyp----~~~YPpY--- 540 (636)
T PLN03133 475 SAKYVMKTDDDAFVRVD---EVLASLKRTN--VSH-GLLYG-LINSDSQPHRNPDSKWYISPEEWP----EETYPPW--- 540 (636)
T ss_pred CceEEEEcCCceEEcHH---HHHHHHHhcC--CCC-ceEEE-EeccCCCcccCCCCCCCCCHHHCC----CCCCCCC---
Confidence 58999999999998554 5555444321 111 11000 1111 0112222221110001111 1244554
Q ss_pred EEeccccccHHHHHHhhhhhcCCCcceehHH-HHhhHhhc
Q 013577 328 VEIMAPVFSRDAWRCVWHMIQNDLVHGWGLD-FALRKCVE 366 (440)
Q Consensus 328 VEIMAPVFSR~Awrcvw~miQNDLvhGWGLD-f~w~~Ca~ 366 (440)
+-.++-|+|++..+.+....+...+.=+.+| -..+.|+.
T Consensus 541 asG~gYVlS~Dla~~L~~~s~s~~l~~f~lEDVyvGi~l~ 580 (636)
T PLN03133 541 AHGPGYVVSRDIAKEVYKRHKEGRLKMFKLEDVAMGIWIA 580 (636)
T ss_pred CCcCEEEEcHHHHHHHHHhhhhcccCcCChhhHhHHHHHH
Confidence 4577889999999987654432233444454 66788875
No 45
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=35.01 E-value=19 Score=32.15 Aligned_cols=20 Identities=35% Similarity=0.664 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhheeeeccc
Q 013577 32 LIVTTFVGVVFGFFIGVSFP 51 (440)
Q Consensus 32 ~~~~~~~~~~~g~~~g~s~p 51 (440)
.|+..++|+++||+++-.+.
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~ 21 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTS 21 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 36777888888888875544
No 46
>PRK00523 hypothetical protein; Provisional
Probab=34.29 E-value=22 Score=29.93 Aligned_cols=15 Identities=33% Similarity=0.747 Sum_probs=11.1
Q ss_pred HHHHHHHHHhhheee
Q 013577 33 IVTTFVGVVFGFFIG 47 (440)
Q Consensus 33 ~~~~~~~~~~g~~~g 47 (440)
|+..++|++.|||++
T Consensus 12 i~~li~G~~~Gffia 26 (72)
T PRK00523 12 IPLLIVGGIIGYFVS 26 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556777888888875
No 47
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=33.94 E-value=21 Score=31.88 Aligned_cols=29 Identities=28% Similarity=0.498 Sum_probs=20.0
Q ss_pred CCCchhhH---HHHHHHH--HHHhhheeeecccc
Q 013577 24 RKTNESMR---LIVTTFV--GVVFGFFIGVSFPT 52 (440)
Q Consensus 24 ~~~~~~~~---~~~~~~~--~~~~g~~~g~s~p~ 52 (440)
-||..+.+ +|+.+++ -+++|+|+|++|=+
T Consensus 9 ~KPsGsL~PWeIfLItLasVvvavGl~aGLfFcv 42 (106)
T PF14654_consen 9 VKPSGSLKPWEIFLITLASVVVAVGLFAGLFFCV 42 (106)
T ss_pred cccCCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57777776 4444444 46789999999944
No 48
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=33.88 E-value=39 Score=31.20 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=29.7
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHHh--CCcccCCC
Q 013577 248 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKH--GLEISQPG 285 (440)
Q Consensus 248 a~YDYIfLwDDDL~Vd~f~i~ryf~Ivr~~--gLeISQPA 285 (440)
+.+|||++.|.|..++.-.+.+.++.+.+. ++-+.|+-
T Consensus 83 a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~ 122 (241)
T cd06427 83 ARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAP 122 (241)
T ss_pred cCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCc
Confidence 679999999999999988888888877643 44444544
No 49
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=33.68 E-value=92 Score=35.34 Aligned_cols=84 Identities=19% Similarity=0.292 Sum_probs=52.9
Q ss_pred CCCcEEEEEEECCCCCc--------ccccc--cC-CcceEEEee---ccccccchhhccCcccccCccEEEEecCccccC
Q 013577 198 SDNFTIVLFHYDGRTTE--------WNEFE--WS-KRAIHVSVR---KQTKWWYAKRFLHPDIVASYDYIFIWDEDLGVE 263 (440)
Q Consensus 198 ~~nFdV~LFhYDG~v~e--------W~d~~--Ws-~~aiHVsa~---kqtKWw~akRFLHPdiva~YDYIfLwDDDL~Vd 263 (440)
.++|++.+.. ||+.++ |.++. .. ..-++|..+ .+.|=-++..|+. -.-..||||.+.|=|..++
T Consensus 157 ~~~~e~~vLd-D~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~~n~~~KaGNl~~~~~-~~~~~~eyivvLDADs~m~ 234 (691)
T PRK05454 157 GAHFDFFILS-DTRDPDIAAAEEAAWLELRAELGGEGRIFYRRRRRNVGRKAGNIADFCR-RWGGAYDYMVVLDADSLMS 234 (691)
T ss_pred CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCCcEEEEECCcCCCccHHHHHHHHH-hcCCCcCEEEEEcCCCCCC
Confidence 4689997776 776654 11110 00 113455443 2234444444442 1116799999999999999
Q ss_pred CCCHHHHHHHHH-HhCCcccC
Q 013577 264 HFNAEEYIKLVR-KHGLEISQ 283 (440)
Q Consensus 264 ~f~i~ryf~Ivr-~~gLeISQ 283 (440)
...+.+++..++ .-++-+-|
T Consensus 235 ~d~L~~lv~~m~~dP~vGlVQ 255 (691)
T PRK05454 235 GDTLVRLVRLMEANPRAGLIQ 255 (691)
T ss_pred HHHHHHHHHHHhhCcCEEEEe
Confidence 999999999986 44666666
No 50
>PF09828 Chrome_Resist: Chromate resistance exported protein; InterPro: IPR018634 Members of this family of bacterial proteins are involved in the reduction of chromate accumulation and are essential for chromate resistance [, ].
Probab=33.66 E-value=25 Score=32.56 Aligned_cols=53 Identities=21% Similarity=0.510 Sum_probs=37.2
Q ss_pred cccchhhccCcccccCccEEEEecCcc-------ccCCCCH-----------HHHHHHHHHhCCcccCCCccCCCCc
Q 013577 234 KWWYAKRFLHPDIVASYDYIFIWDEDL-------GVEHFNA-----------EEYIKLVRKHGLEISQPGLEPNKGL 292 (440)
Q Consensus 234 KWw~akRFLHPdiva~YDYIfLwDDDL-------~Vd~f~i-----------~ryf~Ivr~~gLeISQPALd~~S~i 292 (440)
-=|+++||+-|+ =+++|+.++.+ +.-.|++ -.|=-++++||| .+|||..=..|
T Consensus 14 c~WLIrRFIDp~----A~F~fv~~~~v~~~~~~~~A~pFD~~ga~~tH~g~~cTFe~ll~~f~L--~dpaL~~la~I 84 (135)
T PF09828_consen 14 CPWLIRRFIDPE----AEFLFVPPPEVLDVACPFDAIPFDIPGAEFTHRGDRCTFEVLLASFGL--DDPALARLAAI 84 (135)
T ss_pred CHHHHHHhcCCC----ceEEEeCchhhccccccCCCCcccCCCCeeeeeCCcccHHHHHHHhCC--CCHHHHHHHHH
Confidence 349999999887 56788888772 2223443 236678899999 89999754433
No 51
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=31.54 E-value=46 Score=33.91 Aligned_cols=125 Identities=15% Similarity=0.080 Sum_probs=63.9
Q ss_pred ccEEEEecCccccCCCCHHHHHHHHHHhCCcccC--CCccCCCCcceeeeeecCCcceeeecccCCCCCCCCCCCCccce
Q 013577 250 YDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQ--PGLEPNKGLTWQMTKRRGDREVHKETEEKPGWCSNPHLPPCAAF 327 (440)
Q Consensus 250 YDYIfLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQ--PALd~~S~ish~iT~R~~~~~vHr~~~~~~g~c~~~~~ppcTgF 327 (440)
+|||++.|.|..++...++++++.+++.+..+.. |.....+...+.+. ..-...... ... ..+-.++. +-+.+
T Consensus 134 gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~-~~~~~~~~--~~~~~ 208 (384)
T TIGR03469 134 ADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRLRCESFWEKLLI-PAFVFFFQK-LYP-FRWVNDPR--RRTAA 208 (384)
T ss_pred CCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecccccCCCHHHHHHH-HHHHHHHHH-hcc-hhhhcCCC--cccee
Confidence 9999999999999999999999999887766543 32222211111000 000000000 000 00000000 01222
Q ss_pred EEeccccccHHHHHHhhhhhcCCCcceehHHHHhhHhhcCCCCcEEEEeeeeEE
Q 013577 328 VEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIV 381 (440)
Q Consensus 328 VEIMAPVFSR~Awrcvw~miQNDLvhGWGLDf~w~~Ca~~~~~kIGVVDa~~Vv 381 (440)
+-..+=+++|++++.+=.+ . +..+...=|..+.+.+.....++-.....-.+
T Consensus 209 ~~G~~~lirr~~~~~vGGf-~-~~~~~~~ED~~L~~r~~~~G~~v~~~~~~~~~ 260 (384)
T TIGR03469 209 AAGGCILIRREALERIGGI-A-AIRGALIDDCTLAAAVKRSGGRIWLGLAARTR 260 (384)
T ss_pred ecceEEEEEHHHHHHcCCH-H-HHhhCcccHHHHHHHHHHcCCcEEEEecCceE
Confidence 3233447999999987333 1 11122345788887776555677765544433
No 52
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=30.18 E-value=84 Score=29.54 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=25.7
Q ss_pred ccCccEEEEecCccccCCCCHHHHHHHHHH
Q 013577 247 VASYDYIFIWDEDLGVEHFNAEEYIKLVRK 276 (440)
Q Consensus 247 va~YDYIfLwDDDL~Vd~f~i~ryf~Ivr~ 276 (440)
.+.+|||++.|.|..++.-.+.++.+.+.+
T Consensus 71 ~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~ 100 (244)
T cd04190 71 PDDPEFILLVDADTKFDPDSIVQLYKAMDK 100 (244)
T ss_pred cCCCCEEEEECCCCcCCHhHHHHHHHHHHh
Confidence 478999999999999988888888877743
No 53
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=27.45 E-value=26 Score=33.28 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=12.1
Q ss_pred HHHHHHHHHhhheeeecc
Q 013577 33 IVTTFVGVVFGFFIGVSF 50 (440)
Q Consensus 33 ~~~~~~~~~~g~~~g~s~ 50 (440)
|+++++|+++|+++|..+
T Consensus 3 ii~~i~~~~vG~~~G~~~ 20 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLV 20 (201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566667777777777655
No 54
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.70 E-value=35 Score=38.11 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=28.4
Q ss_pred hhhccCcccccCccEEEEecCccccCCCCHHHHHHH
Q 013577 238 AKRFLHPDIVASYDYIFIWDEDLGVEHFNAEEYIKL 273 (440)
Q Consensus 238 akRFLHPdiva~YDYIfLwDDDL~Vd~f~i~ryf~I 273 (440)
.-++||--+.+.|||++|--||..|++|-.-+++.-
T Consensus 86 vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~h 121 (681)
T KOG3708|consen 86 VLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDH 121 (681)
T ss_pred HHHHHHHhhccccceEEEecCcceecHHHHHHHHhh
Confidence 344555557899999999999999998877777653
No 55
>PF11688 DUF3285: Protein of unknown function (DUF3285); InterPro: IPR021702 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=25.02 E-value=34 Score=26.48 Aligned_cols=27 Identities=33% Similarity=0.599 Sum_probs=21.2
Q ss_pred CCCCchhhHHHHHHHHHHHhhheeeecc
Q 013577 23 NRKTNESMRLIVTTFVGVVFGFFIGVSF 50 (440)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~g~~~g~s~ 50 (440)
.||-..+++.+..+.+| ++||+||+++
T Consensus 16 VRKg~~SL~HF~LT~~g-ll~~lv~la~ 42 (45)
T PF11688_consen 16 VRKGGTSLFHFGLTAVG-LLGFLVGLAY 42 (45)
T ss_pred HHccCcchhHHHHHHHH-HHHHHHHHHH
Confidence 47888889877777776 5799999875
No 56
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=24.33 E-value=37 Score=27.60 Aligned_cols=16 Identities=50% Similarity=0.901 Sum_probs=13.7
Q ss_pred cccccCccEEEEecCc
Q 013577 244 PDIVASYDYIFIWDED 259 (440)
Q Consensus 244 Pdiva~YDYIfLwDDD 259 (440)
..+..+|||||++|.+
T Consensus 13 ~~i~~~~~~iFt~D~~ 28 (79)
T PF12996_consen 13 YSIANSYDYIFTFDRS 28 (79)
T ss_pred hhhCCCCCEEEEECHH
Confidence 4778899999999975
No 57
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=23.11 E-value=60 Score=34.08 Aligned_cols=108 Identities=20% Similarity=0.218 Sum_probs=61.9
Q ss_pred ccccchhhccCcccccCccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcceeeecccC
Q 013577 233 TKWWYAKRFLHPDIVASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPNKGLTWQMTKRRGDREVHKETEEK 312 (440)
Q Consensus 233 tKWw~akRFLHPdiva~YDYIfLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~ 312 (440)
.|=+.+...++-.+..+||+++.=|||.-+=-.|.. ....+| ||+.- +-+-.+-+. |-.
T Consensus 152 ~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr---~~L~~y---------Dp~~p--~YiG~~~~~---~~~---- 210 (364)
T KOG2246|consen 152 RKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLR---YVLSKY---------DPEKP--VYLGYRSKS---YFQ---- 210 (364)
T ss_pred HHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHH---HHHhhc---------CCCCc--EEecccccc---ccc----
Confidence 355666666666777899999999999865444444 444444 34431 111111111 100
Q ss_pred CCCCCCCCCCCccceEEeccc-cccHHHHHH-hhhh-------hcCCCcceehHHHHhhHhhcCCCCcEEEEee
Q 013577 313 PGWCSNPHLPPCAAFVEIMAP-VFSRDAWRC-VWHM-------IQNDLVHGWGLDFALRKCVEPAHEKIGVVDS 377 (440)
Q Consensus 313 ~g~c~~~~~ppcTgFVEIMAP-VFSR~Awrc-vw~m-------iQNDLvhGWGLDf~w~~Ca~~~~~kIGVVDa 377 (440)
-+|.=.||- |.|++|.+- +-.+ +| +-.+ ||=|..+++|++.- .|...|+
T Consensus 211 ------------~~y~~g~ag~~ls~aa~~~la~~l~~~~~~C~~-~~~~-~~eD~~i~~Cl~~~--GV~~~d~ 268 (364)
T KOG2246|consen 211 ------------NGYSSGGAGYVLSFAALRRLAERLLNNEDKCPQ-RYPS-YGEDRRIGRCLAEV--GVPATDE 268 (364)
T ss_pred ------------cccccCCCCcceeHHHHHHHHHHHhcchhhccc-ccCC-chhHHHHHHHHHHh--CCCccCc
Confidence 135556665 788888774 2222 22 1123 79999999999732 3444555
No 58
>PF12621 DUF3779: Phosphate metabolism protein ; InterPro: IPR022257 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02714 from PFAM. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.
Probab=22.93 E-value=47 Score=28.32 Aligned_cols=45 Identities=33% Similarity=0.518 Sum_probs=35.1
Q ss_pred hhhccCcccccCccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCc
Q 013577 238 AKRFLHPDIVASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGL 286 (440)
Q Consensus 238 akRFLHPdiva~YDYIfLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPAL 286 (440)
-..|+||.+.++--.|||+-|++|+....+. -.++.|+.||.-+-
T Consensus 33 ~~ay~~Pa~~~~~P~lWIP~D~~GvS~~ei~----~~~~~~v~~Sd~gA 77 (95)
T PF12621_consen 33 KHAYLHPAVSAPQPILWIPRDPLGVSRQEIE----ETRKVGVPISDEGA 77 (95)
T ss_pred HhccCCHhHcCCCCeEEeecCCCCCCHHHHH----HhhcCCeEEECCCe
Confidence 3567899999999999999999999876554 45666677765543
No 59
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=22.73 E-value=1.8e+02 Score=23.62 Aligned_cols=19 Identities=26% Similarity=0.627 Sum_probs=15.4
Q ss_pred CCCCCCCCCccceEEeccc
Q 013577 315 WCSNPHLPPCAAFVEIMAP 333 (440)
Q Consensus 315 ~c~~~~~ppcTgFVEIMAP 333 (440)
+|.+...-||++.+++..|
T Consensus 62 ~C~~~~~~~C~r~~~~~IP 80 (80)
T PF01060_consen 62 KCNDEGYKPCQRKIKIDIP 80 (80)
T ss_pred eCCCCCCcCceEeEEEECC
Confidence 5876545799999999887
No 60
>PRK10073 putative glycosyl transferase; Provisional
Probab=22.66 E-value=78 Score=31.81 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=31.0
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHHhCCcccC
Q 013577 248 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQ 283 (440)
Q Consensus 248 a~YDYIfLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQ 283 (440)
+.-|||++.|.|-.++...++++++.+++.++++..
T Consensus 84 a~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~ 119 (328)
T PRK10073 84 ATGKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQ 119 (328)
T ss_pred CCCCEEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence 678999999999999888888999988888877754
No 61
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=21.86 E-value=89 Score=27.49 Aligned_cols=29 Identities=21% Similarity=0.149 Sum_probs=25.0
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHH
Q 013577 248 ASYDYIFIWDEDLGVEHFNAEEYIKLVRK 276 (440)
Q Consensus 248 a~YDYIfLwDDDL~Vd~f~i~ryf~Ivr~ 276 (440)
+.||||++.|.|..++...+.++.+.+..
T Consensus 80 ~~~d~v~~~DaD~~~~p~~l~~l~~~~~~ 108 (183)
T cd06438 80 DDPDAVVVFDADNLVDPNALEELNARFAA 108 (183)
T ss_pred CCCCEEEEEcCCCCCChhHHHHHHHHHhh
Confidence 46999999999999998888888877654
No 62
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=21.32 E-value=64 Score=32.67 Aligned_cols=126 Identities=13% Similarity=0.081 Sum_probs=65.2
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCccCC--CCcceeeeeecCCcceeeecccCCCCCCCCCCCCcc
Q 013577 248 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPN--KGLTWQMTKRRGDREVHKETEEKPGWCSNPHLPPCA 325 (440)
Q Consensus 248 a~YDYIfLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd~~--S~ish~iT~R~~~~~vHr~~~~~~g~c~~~~~ppcT 325 (440)
+.||||.+.|.|..++..-+.+..+-++..+..+.+-..... ..+-..+....-..... ++........++
T Consensus 125 a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~- 197 (373)
T TIGR03472 125 ARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLYRGRPVPGFWSRLGAMGINHNFL------PSVMVARALGRA- 197 (373)
T ss_pred ccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEeccccCCCCCCHHHHHHHHHhhhhhh------HHHHHHHhccCC-
Confidence 689999999999999888888888777655655544322110 00000000000000000 000000000000
Q ss_pred ceEEeccccccHHHHHHhhhhhcCCCcceehHHHHhhHhhcCCCCcEEEEeeeeEEee
Q 013577 326 AFVEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQ 383 (440)
Q Consensus 326 gFVEIMAPVFSR~Awrcvw~miQNDLvhGWGLDf~w~~Ca~~~~~kIGVVDa~~VvH~ 383 (440)
.|+-...=+|+|++++.+=.+ ++..+..+=|+.+.+-+.....++.+.+.. +.|+
T Consensus 198 ~~~~G~~~a~RR~~l~~iGGf--~~~~~~~~ED~~l~~~i~~~G~~v~~~~~~-v~~~ 252 (373)
T TIGR03472 198 RFCFGATMALRRATLEAIGGL--AALAHHLADDYWLGELVRALGLRVVLAPVV-VDTD 252 (373)
T ss_pred ccccChhhheeHHHHHHcCCh--HHhcccchHHHHHHHHHHHcCCeEEecchh-hhcC
Confidence 122122237899999977443 222234456888888777677888877654 4553
No 63
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=21.24 E-value=3.8e+02 Score=27.65 Aligned_cols=184 Identities=17% Similarity=0.178 Sum_probs=95.4
Q ss_pred CceecCCCccc----cccCCCCCC--CCCCCCceEEEEEeccccccchHHHHhhhccCCCCccccccccccccccccCCC
Q 013577 124 KIVRAESDFYL----RRLWGNPNE--DLTSQPKYLVTFTVGYDQKNNINAAIKKVGFCFPPTIFFLCVHLCVTNICSKQF 197 (440)
Q Consensus 124 giv~~~sd~~~----r~Lwg~~~~--d~~~~~~~Lla~~vG~~qk~~v~~~v~k~~~~f~~~~~~~~~~~~~~~~~s~~~ 197 (440)
+|-.+..++.. |+=||+++. +.......||+++.. +. .++++|.+ --
T Consensus 100 ~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~--~~-~~~~~l~~------------------------Ea 152 (349)
T KOG2287|consen 100 LVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSN--ED-KLNKLLAD------------------------EA 152 (349)
T ss_pred EEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCc--HH-HHHHHHHH------------------------HH
Confidence 34456667765 678999886 222222333333322 21 45677766 01
Q ss_pred CCCcEEEEEEECCCCCcccccccCCcceEEEeeccccccchhhccCcccccCccEEEEecCccccCCCCHHHHHHHHHHh
Q 013577 198 SDNFTIVLFHYDGRTTEWNEFEWSKRAIHVSVRKQTKWWYAKRFLHPDIVASYDYIFIWDEDLGVEHFNAEEYIKLVRKH 277 (440)
Q Consensus 198 ~~nFdV~LFhYDG~v~eW~d~~Ws~~aiHVsa~kqtKWw~akRFLHPdiva~YDYIfLwDDDL~Vd~f~i~ryf~Ivr~~ 277 (440)
...-||+.-.|..+... +. -|=-...++.. .-..+++||.=.|||+-+. .+.+++..++.
T Consensus 153 ~~ygDIi~~df~Dty~n---lt-------------lKtl~~l~w~~-~~cp~akfi~K~DDDvfv~---~~~L~~~L~~~ 212 (349)
T KOG2287|consen 153 RLYGDIIQVDFEDTYFN---LT-------------LKTLAILLWGV-SKCPDAKFILKIDDDVFVN---PDNLLEYLDKL 212 (349)
T ss_pred HHhCCEEEEecccchhc---hH-------------HHHHHHHHHHH-hcCCcceEEEeccCceEEc---HHHHHHHHhcc
Confidence 24679999988664432 11 11111112111 0012699999999999764 56666666666
Q ss_pred CCcccCCCccCCCCcce-eeeeecCCcceeeecccCCC---CCCCCCCCCccceEEeccccccHHHHHHhhhhhcCCCcc
Q 013577 278 GLEISQPGLEPNKGLTW-QMTKRRGDREVHKETEEKPG---WCSNPHLPPCAAFVEIMAPVFSRDAWRCVWHMIQNDLVH 353 (440)
Q Consensus 278 gLeISQPALd~~S~ish-~iT~R~~~~~vHr~~~~~~g---~c~~~~~ppcTgFVEIMAPVFSR~Awrcvw~miQNDLvh 353 (440)
. -..+.+=.+ .+.+ .-..|.+..+-. .+. .| +..|| |+=.|.-|+|+++-+.+... ...+..
T Consensus 213 ~--~~~~~~~~G-~v~~~~~p~R~~~~Kwy-----Vp~~~y~~--~~YP~---Y~sG~gYvis~~~a~~l~~~-s~~~~~ 278 (349)
T KOG2287|consen 213 N--DPSSDLYYG-RVIQNAPPIRDKTSKWY-----VPESEYPC--SVYPP---YASGPGYVISGDAARRLLKA-SKHLKF 278 (349)
T ss_pred C--CCCcceEEE-eecccCCCCCCCCCCCc-----cCHHHCCC--CCCCC---cCCCceeEecHHHHHHHHHH-hcCCCc
Confidence 5 111111111 1111 112222221100 011 11 12333 34466779999999988874 345566
Q ss_pred eehHHHHhhHhhcCC
Q 013577 354 GWGLDFALRKCVEPA 368 (440)
Q Consensus 354 GWGLDf~w~~Ca~~~ 368 (440)
-|-=|-.++-|++..
T Consensus 279 ~~iEDV~~g~~l~~~ 293 (349)
T KOG2287|consen 279 FPIEDVFVGGCLAED 293 (349)
T ss_pred cchHHHHHHHHHHHh
Confidence 676678889999754
No 64
>PLN02867 Probable galacturonosyltransferase
Probab=21.08 E-value=44 Score=37.06 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=30.0
Q ss_pred hhccCcccccCccEEEEecCccccCCCCHHHHHHH
Q 013577 239 KRFLHPDIVASYDYIFIWDEDLGVEHFNAEEYIKL 273 (440)
Q Consensus 239 kRFLHPdiva~YDYIfLwDDDL~Vd~f~i~ryf~I 273 (440)
.||+=|+++.++|-|...|+|+.|.. ++..++++
T Consensus 334 lRflIPeLLP~LdKVLYLD~DVVVqg-DLseLwdi 367 (535)
T PLN02867 334 LRIYIPELFPDLNKIVFLDDDVVVQH-DLSSLWEL 367 (535)
T ss_pred HHHHHHHHhhccCeEEEecCCEEEcC-chHHHHhC
Confidence 46666999999999999999999988 88888876
Done!