BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013578
(440 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 93/367 (25%), Positives = 162/367 (44%), Gaps = 63/367 (17%)
Query: 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHK-----LDDASSKSFKFLRINLPPG 138
+ TL GH SV G+ FS DG+ +A+A D +++ L + S + P
Sbjct: 91 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD 150
Query: 139 GPPTAVAFADNATSIVVAT----HNLSGCSLYMYG-----EEKAISTNEGKQQSKLPGPE 189
G A A D + L+G S ++G + + I++ + KL
Sbjct: 151 GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL---- 206
Query: 190 IKWEHHKVHDKRAILTLFG-ASATYGTA---DGSTIIASCSEGTDISIWHGKTGKLLGNV 245
W + + + TL G +S+ G A DG T IAS S+ + +W+ + G+LL +
Sbjct: 207 --WN----RNGQLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKLWN-RNGQLLQTL 258
Query: 246 DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWL 305
+ N A P+G+ +A+A+ VK+W ++G + + L GH S+V +
Sbjct: 259 TGHSSSVNGVAFRPDGQTIASASDDKTVKLWN----RNGQL-----LQTLTGHSSSVWGV 309
Query: 306 CFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS 365
F+P+ + I +AS D T+++WN N ++ L+ L G + ++ S
Sbjct: 310 AFSPDGQTIASASDDKTVKLWNRNGQH--------LQTLT-------GHSSSVWGVAFSP 354
Query: 366 DGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSV 425
DG+ +A+ L G++L T H + +A++P +A++S
Sbjct: 355 DGQTIASASDDKTVKLWNRNGQLLQTLT-GHSSSVRGVAFSPDG--------QTIASASD 405
Query: 426 DKKVKLW 432
DK VKLW
Sbjct: 406 DKTVKLW 412
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 91/366 (24%), Positives = 160/366 (43%), Gaps = 63/366 (17%)
Query: 85 NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHK-----LDDASSKSFKFLRINLPPGG 139
N L+ H SV G+ FS DG+ +A+A D +++ L + S + P G
Sbjct: 10 NRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDG 69
Query: 140 PPTAVAFADNATSIVVAT----HNLSGCSLYMYG-----EEKAISTNEGKQQSKLPGPEI 190
A A D + L+G S + G + + I++ + KL
Sbjct: 70 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL----- 124
Query: 191 KWEHHKVHDKRAILTLFG-ASATYGTA---DGSTIIASCSEGTDISIWHGKTGKLLGNVD 246
W + + + TL G +S+ +G A DG TI AS S+ + +W+ + G+LL +
Sbjct: 125 -WNR----NGQLLQTLTGHSSSVWGVAFSPDGQTI-ASASDDKTVKLWN-RNGQLLQTLT 177
Query: 247 TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLC 306
+ A SP+G+ +A+A+ VK+W ++G + + L GH S+V +
Sbjct: 178 GHSSSVWGVAFSPDGQTIASASDDKTVKLWN----RNGQL-----LQTLTGHSSSVRGVA 228
Query: 307 FAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD 366
F+P+ + I +AS D T+++WN N + L+ L G + + ++ D
Sbjct: 229 FSPDGQTIASASDDKTVKLWNRNGQL--------LQTLT-------GHSSSVNGVAFRPD 273
Query: 367 GKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD 426
G+ +A+ L G++L T H + +A++P +A++S D
Sbjct: 274 GQTIASASDDKTVKLWNRNGQLLQTLT-GHSSSVWGVAFSPDG--------QTIASASDD 324
Query: 427 KKVKLW 432
K VKLW
Sbjct: 325 KTVKLW 330
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 98/398 (24%), Positives = 168/398 (42%), Gaps = 84/398 (21%)
Query: 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHK-----LDDASSKSFKFLRINLPPG 138
+ TL GH SV G+ FS DG+ +A+A D +++ L + S + P
Sbjct: 173 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPD 232
Query: 139 GPPTAVAFADNATSI---------VVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPE 189
G A A D + + H+ S + + + I++ + KL
Sbjct: 233 GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKL---- 288
Query: 190 IKWEHHKVHDKRAILTLFG-ASATYGTA---DGSTIIASCSEGTDISIWHGKTGKLLGNV 245
W + + + TL G +S+ +G A DG TI AS S+ + +W+ + G+ L +
Sbjct: 289 --WNR----NGQLLQTLTGHSSSVWGVAFSPDGQTI-ASASDDKTVKLWN-RNGQHLQTL 340
Query: 246 DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWL 305
+ A SP+G+ +A+A+ VK+W ++G + + L GH S+V +
Sbjct: 341 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWN----RNGQL-----LQTLTGHSSSVRGV 391
Query: 306 CFAPNSEQIITASKDGTLRVWNIN----------------VRYHLDE-------DPKTLK 342
F+P+ + I +AS D T+++WN N V + D+ D KT+K
Sbjct: 392 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVK 451
Query: 343 VLPIPLLDSNGATLQ--------YDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEK 394
L + NG LQ ++ S DG+ +A+ L G++L T
Sbjct: 452 -----LWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT- 505
Query: 395 AHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
H + +A++P +A++S DK VKLW
Sbjct: 506 GHSSSVRGVAFSPDG--------QTIASASDDKTVKLW 535
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 127/272 (46%), Gaps = 43/272 (15%)
Query: 74 DQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHK-----LDDASSKSF 128
++N +H + TL GH SV G+ FS DG+ +A+A D +++ L + S
Sbjct: 331 NRNGQH----LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 386
Query: 129 KFLRINLPPGGPPTAVAFADNATSIVVAT----HNLSGCSLYMYG-----EEKAISTNEG 179
+ P G A A D + L+G S ++G +++ I++
Sbjct: 387 SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASD 446
Query: 180 KQQSKLPGPEIKWEHHKVHDKRAILTLFG-ASATYGTA---DGSTIIASCSEGTDISIWH 235
+ KL W + + + TL G +S+ G A DG TI AS S+ + +W+
Sbjct: 447 DKTVKL------WNR----NGQLLQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWN 495
Query: 236 GKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL 295
+ G+LL + + A SP+G+ +A+A+ VK+W ++G + + L
Sbjct: 496 -RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN----RNGQL-----LQTL 545
Query: 296 KGHKSAVTWLCFAPNSEQIITASKDGTLRVWN 327
GH S+V + F+P+ + I +AS D T+++WN
Sbjct: 546 TGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 121/264 (45%), Gaps = 39/264 (14%)
Query: 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV-----HKLDDASSKSFKFLRINLPPG 138
+ TL GH SV G+ FS DG+ +A+A D +++ L + S + P
Sbjct: 296 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPD 355
Query: 139 GPPTAVAFADNATSIVVAT----HNLSGCSLYMYG-----EEKAISTNEGKQQSKLPGPE 189
G A A D + L+G S + G + + I++ + KL
Sbjct: 356 GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL---- 411
Query: 190 IKWEHHKVHDKRAILTLFG-ASATYGTA---DGSTIIASCSEGTDISIWHGKTGKLLGNV 245
W + + + TL G +S+ +G A D TI AS S+ + +W+ + G+LL +
Sbjct: 412 --WNR----NGQLLQTLTGHSSSVWGVAFSPDDQTI-ASASDDKTVKLWN-RNGQLLQTL 463
Query: 246 DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWL 305
+ A SP+G+ +A+A+ VK+W ++G + + L GH S+V +
Sbjct: 464 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWN----RNGQL-----LQTLTGHSSSVRGV 514
Query: 306 CFAPNSEQIITASKDGTLRVWNIN 329
F+P+ + I +AS D T+++WN N
Sbjct: 515 AFSPDGQTIASASDDKTVKLWNRN 538
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 118/267 (44%), Gaps = 36/267 (13%)
Query: 86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA 145
TL GH +V+ + FS +G+ LA++ AD +I++ D KF + + VA
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-----KFEKTISGHKLGISDVA 75
Query: 146 FADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHK 196
++ ++ +V A+ + + C + G + QS L E +
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 197 VHDKRAILTLFG-------ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDTN 248
+ D + + L SA + DGS I++S +G IW +G+ L +D +
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDDD 194
Query: 249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFA 308
+ SPNG+++ AA D+K+W+ YSK +K T GHK+ + FA
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNDLKLWD--YSKGKCLKTYT------GHKNE-KYCIFA 245
Query: 309 PNS----EQIITASKDGTLRVWNINVR 331
S + I++ S+D + +WN+ +
Sbjct: 246 NFSVTGGKWIVSGSEDNMVYIWNLQTK 272
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 90/215 (41%), Gaps = 28/215 (13%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
S ++ S S+ + IW +GK L + + +P + + +F V++W+
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 138
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
VK + L H V+ + F + I+++S DG R+W+
Sbjct: 139 -------VKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 184
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
+ LK L+D + + + + S +GK ILAAT + L+ GK L T H+
Sbjct: 185 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYT-GHK 237
Query: 398 GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
E C+ +A ++ G VS S D V +W
Sbjct: 238 NEKYCI-FANFSVTGGKWIVS----GSEDNMVYIW 267
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 24/142 (16%)
Query: 292 VMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDS 351
+ L GH AV+ + F+PN E + ++S D +++W D K K +
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------YDGKFEKTI------- 64
Query: 352 NGATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTI 410
+G L ++ SSD +L +A+ TL+ V +GK L T K H + C + P
Sbjct: 65 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP--- 120
Query: 411 PMGNQQVSVLATSSVDKKVKLW 432
Q +++ + S D+ V++W
Sbjct: 121 -----QSNLIVSGSFDESVRIW 137
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 30/196 (15%)
Query: 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
+ TL H D V+ + F+ DG + ++ DG+ R+ D AS + K L + P P +
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI--WDTASGQCLKTLIDDDNP--PVSF 200
Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
V F+ N I+ AT + + L+ Y + K + T G HK ++K I
Sbjct: 201 VKFSPNGKYILAATLD-NDLKLWDYSKGKCLKTYTG---------------HK-NEKYCI 243
Query: 204 LTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRF 263
F + G I S SE + IW+ +T +++ + + A P
Sbjct: 244 FANFSVT-------GGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 264 LAAAAFTAD--VKVWE 277
+A+AA D +K+W+
Sbjct: 297 IASAALENDKTIKLWK 312
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/369 (21%), Positives = 152/369 (41%), Gaps = 65/369 (17%)
Query: 80 HPLDV---NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLP 136
+P D+ TL+GH V L ++ + + +A DG R+ + +S+ ++++ P
Sbjct: 52 NPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDG--RLIVWNALTSQKTHAIKLHCP 109
Query: 137 PGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHK 196
AFA N S+ + S CS++ +++ + +P + H
Sbjct: 110 W---VMECAFAPNGQSVACGGLD-SACSIFNL-------SSQADRDGNMPVSRVLTGHKG 158
Query: 197 VHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIW-----HGKTGKLLGNVDTNQLK 251
+ G+ D + ++ + G ISI+ G T +L ++ N L
Sbjct: 159 YASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL-SLSINSLN 217
Query: 252 NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS 311
NM F++ + T V++W++ + +V GH+ + + F P+
Sbjct: 218 ANM--------FISGSCDTT-VRLWDLRITS-------RAVRTYHGHEGDINSVKFFPDG 261
Query: 312 EQIITASKDGTLRVWNINVRYHLD----EDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG 367
++ T S DGT R++++ + L E + LPI ++ S G
Sbjct: 262 QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPI-----------VTSVAFSISG 310
Query: 368 KILAA--THGSTLQWLSVETGKVLD--TAEKAHEGEITCMAWAPKTIPMGNQQVSVLATS 423
++L A ++G W ++ VL+ T + +HEG I+C+ + S L T
Sbjct: 311 RLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDG--------SALCTG 362
Query: 424 SVDKKVKLW 432
S DK +K+W
Sbjct: 363 SWDKNLKIW 371
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/229 (20%), Positives = 93/229 (40%), Gaps = 42/229 (18%)
Query: 220 TIIASCSEGTDISIWHGKTGK----LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKV 275
+++ S SE I +W +TG L G+ D+ Q + +G+ LA+ + +K+
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ----DISFDHSGKLLASCSADMTIKL 176
Query: 276 WEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLD 335
W+ + + + GH V+ + PN + I++AS+D T+++W + Y +
Sbjct: 177 WDF--------QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV- 227
Query: 336 EDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKA 395
KT G + + DG ++A+ + V K +
Sbjct: 228 ---KTF----------TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 274
Query: 396 HEGEITCMAWAPKTIPMGNQQVS------------VLATSSVDKKVKLW 432
H + C++WAP++ + + L + S DK +K+W
Sbjct: 275 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 323
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 24/139 (17%)
Query: 295 LKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGA 354
L GH+S VT + F P +++AS+D T++VW+ Y + +TLK G
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWD----YETGDFERTLK----------GH 149
Query: 355 TLQYDRLSLSSDGKILAATHGS-TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMG 413
T +S GK+LA+ T++ + + + T H+ ++ ++ +P G
Sbjct: 150 TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH-GHDHNVSSVS----IMPNG 204
Query: 414 NQQVSVLATSSVDKKVKLW 432
+ VS +S DK +K+W
Sbjct: 205 DHIVS----ASRDKTIKMW 219
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 58/278 (20%), Positives = 96/278 (34%), Gaps = 48/278 (17%)
Query: 85 NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAV 144
TLKGH DSV + F GK LA+ AD I++ + F+ +R ++V
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF-----QGFECIRTMHGHDHNVSSV 198
Query: 145 AFADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPG-------- 187
+ N IV A+ + + C G + + Q L
Sbjct: 199 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258
Query: 188 -----------PEIKWEHHKVH-------DKRAILTLFGASATYGTADGSTIIASCSEGT 229
E++ H V + ++ S T + + S S
Sbjct: 259 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318
Query: 230 DISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAV 289
I +W TG L + + G+F+ + A ++VW+ Y +K
Sbjct: 319 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD--YKNKRCMKT- 375
Query: 290 TSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN 327
L H+ VT L F + ++T S D T++VW
Sbjct: 376 -----LNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 34.7 bits (78), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 94/232 (40%), Gaps = 52/232 (22%)
Query: 222 IASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYS 281
I S S I +W +TG + ++ M + +G +A+ + V+VW +V +
Sbjct: 207 IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW-VVAT 265
Query: 282 KDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQ--------------------IITASKDG 321
K+ KA +L+ H+ V + +AP S +++ S+D
Sbjct: 266 KE--CKA-----ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318
Query: 322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQW 380
T+++W+++ + L+ G + S GK IL+ TL+
Sbjct: 319 TIKMWDVST--------------GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRV 364
Query: 381 LSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
+ + + T AHE +T + + KT P + T SVD+ VK+W
Sbjct: 365 WDYKNKRCMKTL-NAHEHFVTSLDFH-KTAPY-------VVTGSVDQTVKVW 407
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 117/267 (43%), Gaps = 36/267 (13%)
Query: 86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA 145
TL GH +V+ + FS +G+ LA++ AD +I++ D KF + + VA
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-----KFEKTISGHKLGISDVA 75
Query: 146 FADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHK 196
++ ++ +V A+ + + C + G + QS L E +
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 197 VHDKRAILTLFG-------ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDTN 248
+ D + + L SA + DGS I++S +G IW +G+ L +D +
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDDD 194
Query: 249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFA 308
+ SPNG+++ AA +K+W+ YSK +K T GHK+ + FA
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKGKCLKTYT------GHKNE-KYCIFA 245
Query: 309 PNS----EQIITASKDGTLRVWNINVR 331
S + I++ S+D + +WN+ +
Sbjct: 246 NFSVTGGKWIVSGSEDNMVYIWNLQTK 272
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 91/215 (42%), Gaps = 28/215 (13%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
S ++ S S+ + IW +GK L + + +P + + +F V++W+
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 138
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
VK + L H V+ + F + I+++S DG R+W+
Sbjct: 139 -------VKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 184
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
+ LK L+D + + + + S +GK ILAAT +TL+ GK L T H+
Sbjct: 185 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHK 237
Query: 398 GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
E C+ +A ++ G VS S D V +W
Sbjct: 238 NEKYCI-FANFSVTGGKWIVS----GSEDNMVYIW 267
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 24/142 (16%)
Query: 292 VMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDS 351
+ L GH AV+ + F+PN E + ++S D +++W D K K +
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------YDGKFEKTI------- 64
Query: 352 NGATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTI 410
+G L ++ SSD +L +A+ TL+ V +GK L T K H + C + P
Sbjct: 65 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP--- 120
Query: 411 PMGNQQVSVLATSSVDKKVKLW 432
Q +++ + S D+ V++W
Sbjct: 121 -----QSNLIVSGSFDESVRIW 137
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 30/196 (15%)
Query: 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
+ TL H D V+ + F+ DG + ++ DG+ R+ D AS + K L + P P +
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI--WDTASGQCLKTLIDDDNP--PVSF 200
Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
V F+ N I+ AT + + L+ Y + K + T G HK ++K I
Sbjct: 201 VKFSPNGKYILAATLD-NTLKLWDYSKGKCLKTYTG---------------HK-NEKYCI 243
Query: 204 LTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRF 263
F + G I S SE + IW+ +T +++ + + A P
Sbjct: 244 FANFSVT-------GGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 264 LAAAAFTAD--VKVWE 277
+A+AA D +K+W+
Sbjct: 297 IASAALENDKTIKLWK 312
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 18/135 (13%)
Query: 196 KVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMA 255
K H+ + F + +Y IA+CS + IW TGKL+ D + + N
Sbjct: 661 KAHEDEVLCCAFSSDDSY--------IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC 712
Query: 256 AISPNGRFLAAAAFTAD--VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQ 313
+ L A + D +K+W++ K + M GH ++V F+P+ E
Sbjct: 713 HFTNKSNHLLLATGSNDFFLKLWDLNQ------KECRNTM--FGHTNSVNHCRFSPDDEL 764
Query: 314 IITASKDGTLRVWNI 328
+ + S DGTLR+W++
Sbjct: 765 LASCSADGTLRLWDV 779
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 74/351 (21%), Positives = 127/351 (36%), Gaps = 62/351 (17%)
Query: 87 LKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAF 146
+K H D V FSSD +AT AD +++ S + K + F
Sbjct: 660 IKAHEDEVLCCAFSSDDSYIATCSADKKVKI-----WDSATGKLVHTYDEHSEQVNCCHF 714
Query: 147 ADNATSIVVATH-----------NLSGCSLYMYGEEKAISTNEGKQQSKL------PGPE 189
+ + +++AT N C M+G +++ +L G
Sbjct: 715 TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 774
Query: 190 IKWEHHKVHDKRAI-LTLFGASATYGTADGSTIIASCSEGTD-----------ISIWHGK 237
W+ +++++I + F S+ D I+ CS D + ++
Sbjct: 775 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIH 834
Query: 238 TGKLLGNVDTNQLKN-NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK 296
T LL + T SP A V++W I D +K V +
Sbjct: 835 TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI----DSRLK----VADCR 886
Query: 297 GHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATL 356
GH S V + F+P+ +TAS D T+RVW E K K I L
Sbjct: 887 GHLSWVHGVMFSPDGSSFLTASDDQTIRVW---------ETKKVCKNSAIVLKQEIDVVF 937
Query: 357 QYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAP 407
Q ++ +LA + LQ ++ +TG++ + E +++C +P
Sbjct: 938 Q------ENETMVLAVDNIRGLQLIAGKTGQI----DYLPEAQVSCCCLSP 978
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/355 (22%), Positives = 131/355 (36%), Gaps = 69/355 (19%)
Query: 82 LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPP 141
L V +GH V G+ FS DG TA D IRV + S L+ +
Sbjct: 880 LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEID----- 934
Query: 142 TAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKR 201
V F +N T +V+A N+ G L + E + P +++ D
Sbjct: 935 --VVFQENET-MVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGA 991
Query: 202 AILTLFGASATYG--------------TADGSTIIASCSEGTDISIWHGKTGKLLGNVDT 247
+ + + TADG T+I+S SE + I +W+ +TG + +
Sbjct: 992 IKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISS-SEDSVIQVWNWQTGDYVF-LQA 1049
Query: 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIV-------------------YSKDGLVKA 288
+Q + + R L+ + F VKVW ++ S D +
Sbjct: 1050 HQETVKDFRLLQDSRLLSWS-FDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFS 1108
Query: 289 VTS---------------VMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYH 333
TS + +LKGH V F+ + + T +G +R+WN++
Sbjct: 1109 STSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVS---- 1164
Query: 334 LDEDPKTL-KVLPIPLLDSNGATLQY-DRLSLSSDGKILAATHGSTLQWLSVETG 386
D + L PI + + + + S D K L + G L+W +V TG
Sbjct: 1165 ---DGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA-GGYLKWWNVATG 1215
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 12/72 (16%)
Query: 363 LSSDGKILAATHGS-TLQWLSVETG-KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVL 420
S DG+ +A+ TLQ ETG K+LD KAHE E+ C A++ S +
Sbjct: 630 FSQDGQRIASCGADKTLQVFKAETGEKLLDI--KAHEDEVLCCAFSSDD--------SYI 679
Query: 421 ATSSVDKKVKLW 432
AT S DKKVK+W
Sbjct: 680 ATCSADKKVKIW 691
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/279 (21%), Positives = 98/279 (35%), Gaps = 66/279 (23%)
Query: 85 NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASS-KSFKFLRINLPPGGPPTA 143
NT+ GH +SV FS D + LA+ ADG +R+ + A+ KS R L PP
Sbjct: 744 NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPED 803
Query: 144 VAF--------ADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHH 195
V AD IV A + + ++ G I T I++
Sbjct: 804 VEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHST--------IQYCDF 855
Query: 196 KVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMA 255
+D A++ L D +A C +S HG
Sbjct: 856 SPYDHLAVIALSQYCVELWNIDSRLKVADCR--GHLSWVHG------------------V 895
Query: 256 AISPNGRFLAAAAFTADVKVWE------------------IVYSKDGLVKAVTSV--MQL 295
SP+G A+ ++VWE + + +V AV ++ +QL
Sbjct: 896 MFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQL 955
Query: 296 KGHKSA---------VTWLCFAPNSEQIITASKDGTLRV 325
K+ V+ C +P+ E + +DG +++
Sbjct: 956 IAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKI 994
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 63/136 (46%), Gaps = 24/136 (17%)
Query: 297 GHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATL 356
GHK AV + F + + +I++S+D ++VWN ++ L ++ T+
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-------------FLQAHQETV 1054
Query: 357 QYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQ 416
+ R L D ++L+ + T++ +V TG++ E + TC + + +
Sbjct: 1055 KDFR--LLQDSRLLSWSFDGTVKVWNVITGRI--------ERDFTCHQGTVLSCAISS-D 1103
Query: 417 VSVLATSSVDKKVKLW 432
+ +++S DK K+W
Sbjct: 1104 ATKFSSTSADKTAKIW 1119
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 18/135 (13%)
Query: 196 KVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMA 255
K H+ + F + +Y IA+CS + IW TGKL+ D + + N
Sbjct: 654 KAHEDEVLCCAFSSDDSY--------IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC 705
Query: 256 AISPNGRFLAAAAFTAD--VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQ 313
+ L A + D +K+W++ K + M GH ++V F+P+ E
Sbjct: 706 HFTNKSNHLLLATGSNDFFLKLWDLNQ------KECRNTM--FGHTNSVNHCRFSPDDEL 757
Query: 314 IITASKDGTLRVWNI 328
+ + S DGTLR+W++
Sbjct: 758 LASCSADGTLRLWDV 772
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 74/351 (21%), Positives = 127/351 (36%), Gaps = 62/351 (17%)
Query: 87 LKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAF 146
+K H D V FSSD +AT AD +++ S + K + F
Sbjct: 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKI-----WDSATGKLVHTYDEHSEQVNCCHF 707
Query: 147 ADNATSIVVATH-----------NLSGCSLYMYGEEKAISTNEGKQQSKL------PGPE 189
+ + +++AT N C M+G +++ +L G
Sbjct: 708 TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 767
Query: 190 IKWEHHKVHDKRAI-LTLFGASATYGTADGSTIIASCSEGTD-----------ISIWHGK 237
W+ +++++I + F S+ D I+ CS D + ++
Sbjct: 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIH 827
Query: 238 TGKLLGNVDTNQLKN-NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK 296
T LL + T SP A V++W I D +K V +
Sbjct: 828 TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI----DSRLK----VADCR 879
Query: 297 GHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATL 356
GH S V + F+P+ +TAS D T+RVW E K K I L
Sbjct: 880 GHLSWVHGVMFSPDGSSFLTASDDQTIRVW---------ETKKVCKNSAIVLKQEIDVVF 930
Query: 357 QYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAP 407
Q ++ +LA + LQ ++ +TG++ + E +++C +P
Sbjct: 931 Q------ENETMVLAVDNIRGLQLIAGKTGQI----DYLPEAQVSCCCLSP 971
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 86/363 (23%), Positives = 137/363 (37%), Gaps = 85/363 (23%)
Query: 82 LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPP 141
L V +GH V G+ FS DG TA D IRV + S L+ +
Sbjct: 873 LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEID----- 927
Query: 142 TAVAFADNATSIVVATHNLSG---------------------CSLYMYGEEKAISTNEGK 180
V F +N T +V+A N+ G C L + E A +G
Sbjct: 928 --VVFQENET-MVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGA 984
Query: 181 QQS-KLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG 239
+ +LP + V K+A+ + TADG T+I+S SE + I +W+ +TG
Sbjct: 985 IKIIELPNNRVF--SSGVGHKKAVRHI------QFTADGKTLISS-SEDSVIQVWNWQTG 1035
Query: 240 KLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIV-------------------Y 280
+ + +Q + + R L+ + F VKVW ++
Sbjct: 1036 DYVF-LQAHQETVKDFRLLQDSRLLSWS-FDGTVKVWNVITGRIERDFTCHQGTVLSCAI 1093
Query: 281 SKDGLVKAVTS---------------VMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRV 325
S D + TS + +LKGH V F+ + + T +G +R+
Sbjct: 1094 SSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRI 1153
Query: 326 WNINVRYHLDEDPKTL-KVLPIPLLDSNGATLQY-DRLSLSSDGKILAATHGSTLQWLSV 383
WN++ D + L PI + + + + S D K L + G L+W +V
Sbjct: 1154 WNVS-------DGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA-GGYLKWWNV 1205
Query: 384 ETG 386
TG
Sbjct: 1206 ATG 1208
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 12/72 (16%)
Query: 363 LSSDGKILAATHGS-TLQWLSVETG-KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVL 420
S DG+ +A+ TLQ ETG K+LD KAHE E+ C A++ S +
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDI--KAHEDEVLCCAFSSDD--------SYI 672
Query: 421 ATSSVDKKVKLW 432
AT S DKKVK+W
Sbjct: 673 ATCSADKKVKIW 684
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/279 (21%), Positives = 98/279 (35%), Gaps = 66/279 (23%)
Query: 85 NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASS-KSFKFLRINLPPGGPPTA 143
NT+ GH +SV FS D + LA+ ADG +R+ + A+ KS R L PP
Sbjct: 737 NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPED 796
Query: 144 VAF--------ADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHH 195
V AD IV A + + ++ G I T I++
Sbjct: 797 VEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGH--------HSTIQYCDF 848
Query: 196 KVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMA 255
+D A++ L D +A C +S HG
Sbjct: 849 SPYDHLAVIALSQYCVELWNIDSRLKVADCR--GHLSWVHG------------------V 888
Query: 256 AISPNGRFLAAAAFTADVKVWE------------------IVYSKDGLVKAVTSV--MQL 295
SP+G A+ ++VWE + + +V AV ++ +QL
Sbjct: 889 MFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQL 948
Query: 296 KGHKSA---------VTWLCFAPNSEQIITASKDGTLRV 325
K+ V+ C +P+ E + +DG +++
Sbjct: 949 IAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKI 987
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 63/136 (46%), Gaps = 24/136 (17%)
Query: 297 GHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATL 356
GHK AV + F + + +I++S+D ++VWN ++ L ++ T+
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-------------FLQAHQETV 1047
Query: 357 QYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQ 416
+ R L D ++L+ + T++ +V TG++ E + TC + + +
Sbjct: 1048 KDFR--LLQDSRLLSWSFDGTVKVWNVITGRI--------ERDFTCHQGTVLSCAISS-D 1096
Query: 417 VSVLATSSVDKKVKLW 432
+ +++S DK K+W
Sbjct: 1097 ATKFSSTSADKTAKIW 1112
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 120/268 (44%), Gaps = 38/268 (14%)
Query: 86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRVH-KLDDASSKSFKFLRINLPPGGPPTAV 144
TL GH +V+ + FS +G+ LA++ AD +I++ D K+ ++ + + V
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI------SDV 93
Query: 145 AFADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHH 195
A++ ++ +V A+ + + C + G + QS L E
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 153
Query: 196 KVHD---KRAILTLFG----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDT 247
++ D + + TL SA + DGS I++S +G IW +G+ L +D
Sbjct: 154 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDD 212
Query: 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF 307
+ + SPNG+++ AA +K+W+ YSK +K T GHK+ + F
Sbjct: 213 DNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKGKCLKTYT------GHKNE-KYCIF 263
Query: 308 APNS----EQIITASKDGTLRVWNINVR 331
A S + I++ S+D + +WN+ +
Sbjct: 264 ANFSVTGGKWIVSGSEDNLVYIWNLQTK 291
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
S ++ S S+ + IW +GK L + + +P + + +F V++W+
Sbjct: 99 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 157
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
VK + L H V+ + F + I+++S DG R+W+
Sbjct: 158 -------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 203
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
+ LK L+D + + + + S +GK ILAAT +TL+ GK L T H+
Sbjct: 204 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHK 256
Query: 398 GEITCM 403
E C+
Sbjct: 257 NEKYCI 262
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN 352
L GH AV+ + F+PN E + ++S D +++W D K K + +
Sbjct: 39 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------YDGKFEKTI-------S 84
Query: 353 GATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411
G L ++ SSD +L +A+ TL+ V +GK L T K H + C + P
Sbjct: 85 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP---- 139
Query: 412 MGNQQVSVLATSSVDKKVKLW 432
Q +++ + S D+ V++W
Sbjct: 140 ----QSNLIVSGSFDESVRIW 156
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 30/196 (15%)
Query: 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
+ TL H D V+ + F+ DG + ++ DG+ R+ D AS + K L + P P +
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI--WDTASGQCLKTLIDDDNP--PVSF 219
Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
V F+ N I+ AT + + L+ Y + K + T G HK ++K I
Sbjct: 220 VKFSPNGKYILAATLD-NTLKLWDYSKGKCLKTYTG---------------HK-NEKYCI 262
Query: 204 LTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRF 263
F + G I S SE + IW+ +T +++ + + A P
Sbjct: 263 FANFSVT-------GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 315
Query: 264 LAAAAFTAD--VKVWE 277
+A+AA D +K+W+
Sbjct: 316 IASAALENDKTIKLWK 331
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 30/176 (17%)
Query: 257 ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT 316
SPNG +LA+++ +K+W + DG + S GHK ++ + ++ +S +++
Sbjct: 53 FSPNGEWLASSSADKLIKIWG---AYDGKFEKTIS-----GHKLGISDVAWSSDSNLLVS 104
Query: 317 ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS 376
AS D TL++W+++ L KTLK + N ++ S I++ +
Sbjct: 105 ASDDKTLKIWDVSSGKCL----KTLKGHSNYVFCCN-----FNPQS----NLIVSGSFDE 151
Query: 377 TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
+++ V+TGK L T AH ++ + + N+ S++ +SS D ++W
Sbjct: 152 SVRIWDVKTGKCLKTLP-AHSDPVSAVHF--------NRDGSLIVSSSYDGLCRIW 198
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 120/268 (44%), Gaps = 38/268 (14%)
Query: 86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRVH-KLDDASSKSFKFLRINLPPGGPPTAV 144
TL GH +V+ + FS +G+ LA++ AD +I++ D K+ ++ + + V
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI------SDV 77
Query: 145 AFADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHH 195
A++ ++ +V A+ + + C + G + QS L E
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 196 KVHD---KRAILTLFG----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDT 247
++ D + + TL SA + DGS I++S +G IW +G+ L +D
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDD 196
Query: 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF 307
+ + SPNG+++ AA +K+W+ YSK +K T GHK+ + F
Sbjct: 197 DNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKGKCLKTYT------GHKNE-KYCIF 247
Query: 308 APNS----EQIITASKDGTLRVWNINVR 331
A S + I++ S+D + +WN+ +
Sbjct: 248 ANFSVTGGKWIVSGSEDNLVYIWNLQTK 275
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
S ++ S S+ + IW +GK L + + +P + + +F V++W+
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 141
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
VK + L H V+ + F + I+++S DG R+W+
Sbjct: 142 -------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 187
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
+ LK L+D + + + + S +GK ILAAT +TL+ GK L T H+
Sbjct: 188 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHK 240
Query: 398 GEITCM 403
E C+
Sbjct: 241 NEKYCI 246
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN 352
L GH AV+ + F+PN E + ++S D +++W D K K + +
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------YDGKFEKTI-------S 68
Query: 353 GATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411
G L ++ SSD +L +A+ TL+ V +GK L T K H + C + P
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP---- 123
Query: 412 MGNQQVSVLATSSVDKKVKLW 432
Q +++ + S D+ V++W
Sbjct: 124 ----QSNLIVSGSFDESVRIW 140
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 30/196 (15%)
Query: 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
+ TL H D V+ + F+ DG + ++ DG+ R+ D AS + K L + P P +
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI--WDTASGQCLKTLIDDDNP--PVSF 203
Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
V F+ N I+ AT + + L+ Y + K + T G HK ++K I
Sbjct: 204 VKFSPNGKYILAATLD-NTLKLWDYSKGKCLKTYTG---------------HK-NEKYCI 246
Query: 204 LTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRF 263
F + G I S SE + IW+ +T +++ + + A P
Sbjct: 247 FANFSVT-------GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 299
Query: 264 LAAAAFTAD--VKVWE 277
+A+AA D +K+W+
Sbjct: 300 IASAALENDKTIKLWK 315
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 30/176 (17%)
Query: 257 ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT 316
SPNG +LA+++ +K+W + DG + S GHK ++ + ++ +S +++
Sbjct: 37 FSPNGEWLASSSADKLIKIWG---AYDGKFEKTIS-----GHKLGISDVAWSSDSNLLVS 88
Query: 317 ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS 376
AS D TL++W+++ L KTLK + N ++ S I++ +
Sbjct: 89 ASDDKTLKIWDVSSGKCL----KTLKGHSNYVFCCN-----FNPQS----NLIVSGSFDE 135
Query: 377 TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
+++ V+TGK L T AH ++ + + N+ S++ +SS D ++W
Sbjct: 136 SVRIWDVKTGKCLKTLP-AHSDPVSAVHF--------NRDGSLIVSSSYDGLCRIW 182
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 120/268 (44%), Gaps = 38/268 (14%)
Query: 86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRVH-KLDDASSKSFKFLRINLPPGGPPTAV 144
TL GH +V+ + FS +G+ LA++ AD +I++ D K+ ++ + + V
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI------SDV 95
Query: 145 AFADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHH 195
A++ ++ +V A+ + + C + G + QS L E
Sbjct: 96 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 155
Query: 196 KVHD---KRAILTLFG----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDT 247
++ D + + TL SA + DGS I++S +G IW +G+ L +D
Sbjct: 156 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDD 214
Query: 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF 307
+ + SPNG+++ AA +K+W+ YSK +K T GHK+ + F
Sbjct: 215 DNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKGKCLKTYT------GHKNE-KYCIF 265
Query: 308 APNS----EQIITASKDGTLRVWNINVR 331
A S + I++ S+D + +WN+ +
Sbjct: 266 ANFSVTGGKWIVSGSEDNLVYIWNLQTK 293
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
S ++ S S+ + IW +GK L + + +P + + +F V++W+
Sbjct: 101 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 159
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
VK + L H V+ + F + I+++S DG R+W+
Sbjct: 160 -------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 205
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
+ LK L+D + + + + S +GK ILAAT +TL+ GK L T H+
Sbjct: 206 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHK 258
Query: 398 GEITCM 403
E C+
Sbjct: 259 NEKYCI 264
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN 352
L GH AV+ + F+PN E + ++S D +++W D K K + +
Sbjct: 41 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------YDGKFEKTI-------S 86
Query: 353 GATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411
G L ++ SSD +L +A+ TL+ V +GK L T K H + C + P
Sbjct: 87 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP---- 141
Query: 412 MGNQQVSVLATSSVDKKVKLW 432
Q +++ + S D+ V++W
Sbjct: 142 ----QSNLIVSGSFDESVRIW 158
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 30/196 (15%)
Query: 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
+ TL H D V+ + F+ DG + ++ DG+ R+ D AS + K L + P P +
Sbjct: 166 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI--WDTASGQCLKTLIDDDNP--PVSF 221
Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
V F+ N I+ AT + + L+ Y + K + T G HK ++K I
Sbjct: 222 VKFSPNGKYILAATLD-NTLKLWDYSKGKCLKTYTG---------------HK-NEKYCI 264
Query: 204 LTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRF 263
F + G I S SE + IW+ +T +++ + + A P
Sbjct: 265 FANFSVT-------GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 317
Query: 264 LAAAAFTAD--VKVWE 277
+A+AA D +K+W+
Sbjct: 318 IASAALENDKTIKLWK 333
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 30/176 (17%)
Query: 257 ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT 316
SPNG +LA+++ +K+W + DG + S GHK ++ + ++ +S +++
Sbjct: 55 FSPNGEWLASSSADKLIKIWG---AYDGKFEKTIS-----GHKLGISDVAWSSDSNLLVS 106
Query: 317 ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS 376
AS D TL++W+++ L KTLK + N ++ S I++ +
Sbjct: 107 ASDDKTLKIWDVSSGKCL----KTLKGHSNYVFCCN-----FNPQS----NLIVSGSFDE 153
Query: 377 TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
+++ V+TGK L T AH ++ + + N+ S++ +SS D ++W
Sbjct: 154 SVRIWDVKTGKCLKTLP-AHSDPVSAVHF--------NRDGSLIVSSSYDGLCRIW 200
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 120/268 (44%), Gaps = 38/268 (14%)
Query: 86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRVH-KLDDASSKSFKFLRINLPPGGPPTAV 144
TL GH +V+ + FS +G+ LA++ AD +I++ D K+ ++ + + V
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI------SDV 67
Query: 145 AFADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHH 195
A++ ++ +V A+ + + C + G + QS L E
Sbjct: 68 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 127
Query: 196 KVHD---KRAILTLFG----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDT 247
++ D + + TL SA + DGS I++S +G IW +G+ L +D
Sbjct: 128 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDD 186
Query: 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF 307
+ + SPNG+++ AA +K+W+ YSK +K T GHK+ + F
Sbjct: 187 DNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKGKCLKTYT------GHKNE-KYCIF 237
Query: 308 APNS----EQIITASKDGTLRVWNINVR 331
A S + I++ S+D + +WN+ +
Sbjct: 238 ANFSVTGGKWIVSGSEDNLVYIWNLQTK 265
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
S ++ S S+ + IW +GK L + + +P + + +F V++W+
Sbjct: 73 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 131
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
VK + L H V+ + F + I+++S DG R+W+
Sbjct: 132 -------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 177
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
+ LK L+D + + + + S +GK ILAAT +TL+ GK L T H+
Sbjct: 178 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHK 230
Query: 398 GEITCM 403
E C+
Sbjct: 231 NEKYCI 236
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN 352
L GH AV+ + F+PN E + ++S D +++W D K K + +
Sbjct: 13 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------YDGKFEKTI-------S 58
Query: 353 GATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411
G L ++ SSD +L +A+ TL+ V +GK L T K H + C + P
Sbjct: 59 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP---- 113
Query: 412 MGNQQVSVLATSSVDKKVKLW 432
Q +++ + S D+ V++W
Sbjct: 114 ----QSNLIVSGSFDESVRIW 130
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 30/196 (15%)
Query: 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
+ TL H D V+ + F+ DG + ++ DG+ R+ D AS + K L + P P +
Sbjct: 138 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI--WDTASGQCLKTLIDDDNP--PVSF 193
Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
V F+ N I+ AT + + L+ Y + K + T G HK ++K I
Sbjct: 194 VKFSPNGKYILAATLD-NTLKLWDYSKGKCLKTYTG---------------HK-NEKYCI 236
Query: 204 LTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRF 263
F + G I S SE + IW+ +T +++ + + A P
Sbjct: 237 FANFSVT-------GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 289
Query: 264 LAAAAFTAD--VKVWE 277
+A+AA D +K+W+
Sbjct: 290 IASAALENDKTIKLWK 305
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 30/176 (17%)
Query: 257 ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT 316
SPNG +LA+++ +K+W + DG + S GHK ++ + ++ +S +++
Sbjct: 27 FSPNGEWLASSSADKLIKIWG---AYDGKFEKTIS-----GHKLGISDVAWSSDSNLLVS 78
Query: 317 ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS 376
AS D TL++W+++ L KTLK + N ++ S I++ +
Sbjct: 79 ASDDKTLKIWDVSSGKCL----KTLKGHSNYVFCCN-----FNPQS----NLIVSGSFDE 125
Query: 377 TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
+++ V+TGK L T AH ++ + + N+ S++ +SS D ++W
Sbjct: 126 SVRIWDVKTGKCLKTLP-AHSDPVSAVHF--------NRDGSLIVSSSYDGLCRIW 172
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 120/268 (44%), Gaps = 38/268 (14%)
Query: 86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRVH-KLDDASSKSFKFLRINLPPGGPPTAV 144
TL GH +V+ + FS +G+ LA++ AD +I++ D K+ ++ + + V
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI------SDV 71
Query: 145 AFADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHH 195
A++ ++ +V A+ + + C + G + QS L E
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 131
Query: 196 KVHD---KRAILTLFG----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDT 247
++ D + + TL SA + DGS I++S +G IW +G+ L +D
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDD 190
Query: 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF 307
+ + SPNG+++ AA +K+W+ YSK +K T GHK+ + F
Sbjct: 191 DNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKGKCLKTYT------GHKNE-KYCIF 241
Query: 308 APNS----EQIITASKDGTLRVWNINVR 331
A S + I++ S+D + +WN+ +
Sbjct: 242 ANFSVTGGKWIVSGSEDNLVYIWNLQTK 269
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
S ++ S S+ + IW +GK L + + +P + + +F V++W+
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 135
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
VK + L H V+ + F + I+++S DG R+W+
Sbjct: 136 -------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 181
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
+ LK L+D + + + + S +GK ILAAT +TL+ GK L T H+
Sbjct: 182 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHK 234
Query: 398 GEITCM 403
E C+
Sbjct: 235 NEKYCI 240
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN 352
L GH AV+ + F+PN E + ++S D +++W D K K + +
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------YDGKFEKTI-------S 62
Query: 353 GATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411
G L ++ SSD +L +A+ TL+ V +GK L T K H + C + P
Sbjct: 63 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP---- 117
Query: 412 MGNQQVSVLATSSVDKKVKLW 432
Q +++ + S D+ V++W
Sbjct: 118 ----QSNLIVSGSFDESVRIW 134
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 30/196 (15%)
Query: 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
+ TL H D V+ + F+ DG + ++ DG+ R+ D AS + K L + P P +
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI--WDTASGQCLKTLIDDDNP--PVSF 197
Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
V F+ N I+ AT + + L+ Y + K + T G HK ++K I
Sbjct: 198 VKFSPNGKYILAATLD-NTLKLWDYSKGKCLKTYTG---------------HK-NEKYCI 240
Query: 204 LTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRF 263
F + G I S SE + IW+ +T +++ + + A P
Sbjct: 241 FANFSVT-------GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 293
Query: 264 LAAAAFTAD--VKVWE 277
+A+AA D +K+W+
Sbjct: 294 IASAALENDKTIKLWK 309
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 30/176 (17%)
Query: 257 ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT 316
SPNG +LA+++ +K+W + DG + S GHK ++ + ++ +S +++
Sbjct: 31 FSPNGEWLASSSADKLIKIWG---AYDGKFEKTIS-----GHKLGISDVAWSSDSNLLVS 82
Query: 317 ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS 376
AS D TL++W+++ L KTLK + N ++ S I++ +
Sbjct: 83 ASDDKTLKIWDVSSGKCL----KTLKGHSNYVFCCN-----FNPQS----NLIVSGSFDE 129
Query: 377 TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
+++ V+TGK L T AH ++ + + N+ S++ +SS D ++W
Sbjct: 130 SVRIWDVKTGKCLKTLP-AHSDPVSAVHF--------NRDGSLIVSSSYDGLCRIW 176
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 120/268 (44%), Gaps = 38/268 (14%)
Query: 86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRVH-KLDDASSKSFKFLRINLPPGGPPTAV 144
TL GH +V+ + FS +G+ LA++ AD +I++ D K+ ++ + + V
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI------SDV 70
Query: 145 AFADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHH 195
A++ ++ +V A+ + + C + G + QS L E
Sbjct: 71 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 130
Query: 196 KVHD---KRAILTLFG----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDT 247
++ D + + TL SA + DGS I++S +G IW +G+ L +D
Sbjct: 131 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDD 189
Query: 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF 307
+ + SPNG+++ AA +K+W+ YSK +K T GHK+ + F
Sbjct: 190 DNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKGKCLKTYT------GHKNE-KYCIF 240
Query: 308 APNS----EQIITASKDGTLRVWNINVR 331
A S + I++ S+D + +WN+ +
Sbjct: 241 ANFSVTGGKWIVSGSEDNLVYIWNLQTK 268
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
S ++ S S+ + IW +GK L + + +P + + +F V++W+
Sbjct: 76 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 134
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
VK + L H V+ + F + I+++S DG R+W+
Sbjct: 135 -------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 180
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
+ LK L+D + + + + S +GK ILAAT +TL+ GK L T H+
Sbjct: 181 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHK 233
Query: 398 GEITCM 403
E C+
Sbjct: 234 NEKYCI 239
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN 352
L GH AV+ + F+PN E + ++S D +++W D K K + +
Sbjct: 16 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------YDGKFEKTI-------S 61
Query: 353 GATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411
G L ++ SSD +L +A+ TL+ V +GK L T K H + C + P
Sbjct: 62 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP---- 116
Query: 412 MGNQQVSVLATSSVDKKVKLW 432
Q +++ + S D+ V++W
Sbjct: 117 ----QSNLIVSGSFDESVRIW 133
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 30/196 (15%)
Query: 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
+ TL H D V+ + F+ DG + ++ DG+ R+ D AS + K L + P P +
Sbjct: 141 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI--WDTASGQCLKTLIDDDNP--PVSF 196
Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
V F+ N I+ AT + + L+ Y + K + T G HK ++K I
Sbjct: 197 VKFSPNGKYILAATLD-NTLKLWDYSKGKCLKTYTG---------------HK-NEKYCI 239
Query: 204 LTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRF 263
F + G I S SE + IW+ +T +++ + + A P
Sbjct: 240 FANFSVT-------GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 292
Query: 264 LAAAAFTAD--VKVWE 277
+A+AA D +K+W+
Sbjct: 293 IASAALENDKTIKLWK 308
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 30/176 (17%)
Query: 257 ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT 316
SPNG +LA+++ +K+W + DG + S GHK ++ + ++ +S +++
Sbjct: 30 FSPNGEWLASSSADKLIKIWG---AYDGKFEKTIS-----GHKLGISDVAWSSDSNLLVS 81
Query: 317 ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS 376
AS D TL++W+++ L KTLK + N ++ S I++ +
Sbjct: 82 ASDDKTLKIWDVSSGKCL----KTLKGHSNYVFCCN-----FNPQS----NLIVSGSFDE 128
Query: 377 TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
+++ V+TGK L T AH ++ + + N+ S++ +SS D ++W
Sbjct: 129 SVRIWDVKTGKCLKTLP-AHSDPVSAVHF--------NRDGSLIVSSSYDGLCRIW 175
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 120/268 (44%), Gaps = 38/268 (14%)
Query: 86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRVH-KLDDASSKSFKFLRINLPPGGPPTAV 144
TL GH +V+ + FS +G+ LA++ AD +I++ D K+ ++ + + V
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI------SDV 77
Query: 145 AFADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHH 195
A++ ++ +V A+ + + C + G + QS L E
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 196 KVHD---KRAILTLFG----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDT 247
++ D + + TL SA + DGS I++S +G IW +G+ L +D
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDD 196
Query: 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF 307
+ + SPNG+++ AA +K+W+ YSK +K T GHK+ + F
Sbjct: 197 DNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKGKCLKTYT------GHKNE-KYCIF 247
Query: 308 APNS----EQIITASKDGTLRVWNINVR 331
A S + I++ S+D + +WN+ +
Sbjct: 248 ANFSVTGGKWIVSGSEDNLVYIWNLQTK 275
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
S ++ S S+ + IW +GK L + + +P + + +F V++W+
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 141
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
VK + L H V+ + F + I+++S DG R+W+
Sbjct: 142 -------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 187
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
+ LK L+D + + + + S +GK ILAAT +TL+ GK L T H+
Sbjct: 188 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHK 240
Query: 398 GEITCM 403
E C+
Sbjct: 241 NEKYCI 246
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN 352
L GH AV+ + F+PN E + ++S D +++W D K K + +
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------YDGKFEKTI-------S 68
Query: 353 GATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411
G L ++ SSD +L +A+ TL+ V +GK L T K H + C + P
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP---- 123
Query: 412 MGNQQVSVLATSSVDKKVKLW 432
Q +++ + S D+ V++W
Sbjct: 124 ----QSNLIVSGSFDESVRIW 140
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 30/196 (15%)
Query: 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
+ TL H D V+ + F+ DG + ++ DG+ R+ D AS + K L + P P +
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI--WDTASGQCLKTLIDDDNP--PVSF 203
Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
V F+ N I+ AT + + L+ Y + K + T G HK ++K I
Sbjct: 204 VKFSPNGKYILAATLD-NTLKLWDYSKGKCLKTYTG---------------HK-NEKYCI 246
Query: 204 LTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRF 263
F + G I S SE + IW+ +T +++ + + A P
Sbjct: 247 FANFSVT-------GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 299
Query: 264 LAAAAFTAD--VKVWE 277
+A+AA D +K+W+
Sbjct: 300 IASAALENDKTIKLWK 315
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 30/176 (17%)
Query: 257 ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT 316
SPNG +LA+++ +K+W + DG + S GHK ++ + ++ +S +++
Sbjct: 37 FSPNGEWLASSSADKLIKIWG---AYDGKFEKTIS-----GHKLGISDVAWSSDSNLLVS 88
Query: 317 ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS 376
AS D TL++W+++ L KTLK + N ++ S I++ +
Sbjct: 89 ASDDKTLKIWDVSSGKCL----KTLKGHSNYVFCCN-----FNPQS----NLIVSGSFDE 135
Query: 377 TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
+++ V+TGK L T AH ++ + + N+ S++ +SS D ++W
Sbjct: 136 SVRIWDVKTGKCLKTLP-AHSDPVSAVHF--------NRDGSLIVSSSYDGLCRIW 182
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 118/267 (44%), Gaps = 36/267 (13%)
Query: 86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA 145
TL GH +V+ + FS +G+ LA++ AD +I++ D KF + + VA
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-----KFEKTISGHKLGISDVA 89
Query: 146 FADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHK 196
++ ++ +V A+ + + C + G + QS L E +
Sbjct: 90 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 149
Query: 197 VHD---KRAILTLFG----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDTN 248
+ D + + TL SA + DGS I++S +G IW +G+ L +D +
Sbjct: 150 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDDD 208
Query: 249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFA 308
+ SPNG+++ AA +K+W+ YSK +K T GHK+ + FA
Sbjct: 209 NPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKGKCLKTYT------GHKNE-KYCIFA 259
Query: 309 PNS----EQIITASKDGTLRVWNINVR 331
S + I++ S+D + +WN+ +
Sbjct: 260 NFSVTGGKWIVSGSEDNLVYIWNLQTK 286
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
S ++ S S+ + IW +GK L + + +P + + +F V++W+
Sbjct: 94 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 152
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
VK + L H V+ + F + I+++S DG R+W+
Sbjct: 153 -------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 198
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
+ LK L+D + + + + S +GK ILAAT +TL+ GK L T H+
Sbjct: 199 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHK 251
Query: 398 GEITCM 403
E C+
Sbjct: 252 NEKYCI 257
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN 352
L GH AV+ + F+PN E + ++S D +++W D K K + +
Sbjct: 34 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------YDGKFEKTI-------S 79
Query: 353 GATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411
G L ++ SSD +L +A+ TL+ V +GK L T K H + C + P
Sbjct: 80 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP---- 134
Query: 412 MGNQQVSVLATSSVDKKVKLW 432
Q +++ + S D+ V++W
Sbjct: 135 ----QSNLIVSGSFDESVRIW 151
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 30/196 (15%)
Query: 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
+ TL H D V+ + F+ DG + ++ DG+ R+ D AS + K L + P P +
Sbjct: 159 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI--WDTASGQCLKTLIDDDNP--PVSF 214
Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
V F+ N I+ AT + + L+ Y + K + T G HK ++K I
Sbjct: 215 VKFSPNGKYILAATLD-NTLKLWDYSKGKCLKTYTG---------------HK-NEKYCI 257
Query: 204 LTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRF 263
F + G I S SE + IW+ +T +++ + + A P
Sbjct: 258 FANFSVT-------GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 310
Query: 264 LAAAAFTAD--VKVWE 277
+A+AA D +K+W+
Sbjct: 311 IASAALENDKTIKLWK 326
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 30/176 (17%)
Query: 257 ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT 316
SPNG +LA+++ +K+W + DG + S GHK ++ + ++ +S +++
Sbjct: 48 FSPNGEWLASSSADKLIKIWG---AYDGKFEKTIS-----GHKLGISDVAWSSDSNLLVS 99
Query: 317 ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS 376
AS D TL++W+++ L KTLK + N ++ S I++ +
Sbjct: 100 ASDDKTLKIWDVSSGKCL----KTLKGHSNYVFCCN-----FNPQS----NLIVSGSFDE 146
Query: 377 TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
+++ V+TGK L T AH ++ + + N+ S++ +SS D ++W
Sbjct: 147 SVRIWDVKTGKCLKTLP-AHSDPVSAVHF--------NRDGSLIVSSSYDGLCRIW 193
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 120/268 (44%), Gaps = 38/268 (14%)
Query: 86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRVH-KLDDASSKSFKFLRINLPPGGPPTAV 144
TL GH +V+ + FS +G+ LA++ AD +I++ D K+ ++ + + V
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI------SDV 71
Query: 145 AFADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHH 195
A++ ++ +V A+ + + C + G + QS L E
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 131
Query: 196 KVHD---KRAILTLFG----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDT 247
++ D + + TL SA + DGS I++S +G IW +G+ L +D
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDD 190
Query: 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF 307
+ + SPNG+++ AA +K+W+ YSK +K T GHK+ + F
Sbjct: 191 DNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKGKCLKTYT------GHKNE-KYCIF 241
Query: 308 APNS----EQIITASKDGTLRVWNINVR 331
A S + I++ S+D + +WN+ +
Sbjct: 242 ANFSVTGGKWIVSGSEDNLVYIWNLQTK 269
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
S ++ S S+ + IW +GK L + + +P + + +F V++W+
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 135
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
VK + L H V+ + F + I+++S DG R+W+
Sbjct: 136 -------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 181
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
+ LK L+D + + + + S +GK ILAAT +TL+ GK L T H+
Sbjct: 182 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHK 234
Query: 398 GEITCM 403
E C+
Sbjct: 235 NEKYCI 240
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN 352
L GH AV+ + F+PN E + ++S D +++W D K K + +
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------YDGKFEKTI-------S 62
Query: 353 GATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411
G L ++ SSD +L +A+ TL+ V +GK L T K H + C + P
Sbjct: 63 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP---- 117
Query: 412 MGNQQVSVLATSSVDKKVKLW 432
Q +++ + S D+ V++W
Sbjct: 118 ----QSNLIVSGSFDESVRIW 134
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 30/196 (15%)
Query: 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
+ TL H D V+ + F+ DG + ++ DG+ R+ D AS + K L + P P +
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI--WDTASGQCLKTLIDDDNP--PVSF 197
Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
V F+ N I+ AT + + L+ Y + K + T G HK ++K I
Sbjct: 198 VKFSPNGKYILAATLD-NTLKLWDYSKGKCLKTYTG---------------HK-NEKYCI 240
Query: 204 LTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRF 263
F + G I S SE + IW+ +T +++ + + A P
Sbjct: 241 FANFSVT-------GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 293
Query: 264 LAAAAFTAD--VKVWE 277
+A+AA D +K+W+
Sbjct: 294 IASAALENDKTIKLWK 309
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 30/176 (17%)
Query: 257 ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT 316
SPNG +LA+++ +K+W + DG + S GHK ++ + ++ +S +++
Sbjct: 31 FSPNGEWLASSSADKLIKIWG---AYDGKFEKTIS-----GHKLGISDVAWSSDSNLLVS 82
Query: 317 ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS 376
AS D TL++W+++ L KTLK + N ++ S I++ +
Sbjct: 83 ASDDKTLKIWDVSSGKCL----KTLKGHSNYVFCCN-----FNPQS----NLIVSGSFDE 129
Query: 377 TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
+++ V+TGK L T AH ++ + + N+ S++ +SS D ++W
Sbjct: 130 SVRIWDVKTGKCLKTLP-AHSDPVSAVHF--------NRDGSLIVSSSYDGLCRIW 176
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 120/268 (44%), Gaps = 38/268 (14%)
Query: 86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRVH-KLDDASSKSFKFLRINLPPGGPPTAV 144
TL GH +V+ + FS +G+ LA++ AD +I++ D K+ ++ + + V
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI------SDV 72
Query: 145 AFADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHH 195
A++ ++ +V A+ + + C + G + QS L E
Sbjct: 73 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 132
Query: 196 KVHD---KRAILTLFG----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDT 247
++ D + + TL SA + DGS I++S +G IW +G+ L +D
Sbjct: 133 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDD 191
Query: 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF 307
+ + SPNG+++ AA +K+W+ YSK +K T GHK+ + F
Sbjct: 192 DNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKGKCLKTYT------GHKNE-KYCIF 242
Query: 308 APNS----EQIITASKDGTLRVWNINVR 331
A S + I++ S+D + +WN+ +
Sbjct: 243 ANFSVTGGKWIVSGSEDNLVYIWNLQTK 270
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
S ++ S S+ + IW +GK L + + +P + + +F V++W+
Sbjct: 78 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 136
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
VK + L H V+ + F + I+++S DG R+W+
Sbjct: 137 -------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 182
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
+ LK L+D + + + + S +GK ILAAT +TL+ GK L T H+
Sbjct: 183 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHK 235
Query: 398 GEITCM 403
E C+
Sbjct: 236 NEKYCI 241
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN 352
L GH AV+ + F+PN E + ++S D +++W D K K + +
Sbjct: 18 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------YDGKFEKTI-------S 63
Query: 353 GATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411
G L ++ SSD +L +A+ TL+ V +GK L T K H + C + P
Sbjct: 64 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP---- 118
Query: 412 MGNQQVSVLATSSVDKKVKLW 432
Q +++ + S D+ V++W
Sbjct: 119 ----QSNLIVSGSFDESVRIW 135
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 30/196 (15%)
Query: 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
+ TL H D V+ + F+ DG + ++ DG+ R+ D AS + K L + P P +
Sbjct: 143 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI--WDTASGQCLKTLIDDDNP--PVSF 198
Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
V F+ N I+ AT + + L+ Y + K + T G HK ++K I
Sbjct: 199 VKFSPNGKYILAATLD-NTLKLWDYSKGKCLKTYTG---------------HK-NEKYCI 241
Query: 204 LTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRF 263
F + G I S SE + IW+ +T +++ + + A P
Sbjct: 242 FANFSVT-------GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 294
Query: 264 LAAAAFTAD--VKVWE 277
+A+AA D +K+W+
Sbjct: 295 IASAALENDKTIKLWK 310
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 30/176 (17%)
Query: 257 ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT 316
SPNG +LA+++ +K+W + DG + S GHK ++ + ++ +S +++
Sbjct: 32 FSPNGEWLASSSADKLIKIWG---AYDGKFEKTIS-----GHKLGISDVAWSSDSNLLVS 83
Query: 317 ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS 376
AS D TL++W+++ L KTLK + N ++ S I++ +
Sbjct: 84 ASDDKTLKIWDVSSGKCL----KTLKGHSNYVFCCN-----FNPQS----NLIVSGSFDE 130
Query: 377 TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
+++ V+TGK L T AH ++ + + N+ S++ +SS D ++W
Sbjct: 131 SVRIWDVKTGKCLKTLP-AHSDPVSAVHF--------NRDGSLIVSSSYDGLCRIW 177
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 120/268 (44%), Gaps = 38/268 (14%)
Query: 86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRVH-KLDDASSKSFKFLRINLPPGGPPTAV 144
TL GH +V+ + FS +G+ LA++ AD +I++ D K+ ++ + + V
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI------SDV 76
Query: 145 AFADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHH 195
A++ ++ +V A+ + + C + G + QS L E
Sbjct: 77 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 136
Query: 196 KVHD---KRAILTLFG----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDT 247
++ D + + TL SA + DGS I++S +G IW +G+ L +D
Sbjct: 137 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDD 195
Query: 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF 307
+ + SPNG+++ AA +K+W+ YSK +K T GHK+ + F
Sbjct: 196 DNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKGKCLKTYT------GHKNE-KYCIF 246
Query: 308 APNS----EQIITASKDGTLRVWNINVR 331
A S + I++ S+D + +WN+ +
Sbjct: 247 ANFSVTGGKWIVSGSEDNLVYIWNLQTK 274
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
S ++ S S+ + IW +GK L + + +P + + +F V++W+
Sbjct: 82 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 140
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
VK + L H V+ + F + I+++S DG R+W+
Sbjct: 141 -------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 186
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
+ LK L+D + + + + S +GK ILAAT +TL+ GK L T H+
Sbjct: 187 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHK 239
Query: 398 GEITCM 403
E C+
Sbjct: 240 NEKYCI 245
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN 352
L GH AV+ + F+PN E + ++S D +++W D K K + +
Sbjct: 22 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------YDGKFEKTI-------S 67
Query: 353 GATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411
G L ++ SSD +L +A+ TL+ V +GK L T K H + C + P
Sbjct: 68 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP---- 122
Query: 412 MGNQQVSVLATSSVDKKVKLW 432
Q +++ + S D+ V++W
Sbjct: 123 ----QSNLIVSGSFDESVRIW 139
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 30/196 (15%)
Query: 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
+ TL H D V+ + F+ DG + ++ DG+ R+ D AS + K L + P P +
Sbjct: 147 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI--WDTASGQCLKTLIDDDNP--PVSF 202
Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
V F+ N I+ AT + + L+ Y + K + T G HK ++K I
Sbjct: 203 VKFSPNGKYILAATLD-NTLKLWDYSKGKCLKTYTG---------------HK-NEKYCI 245
Query: 204 LTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRF 263
F + G I S SE + IW+ +T +++ + + A P
Sbjct: 246 FANFSVT-------GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 298
Query: 264 LAAAAFTAD--VKVWE 277
+A+AA D +K+W+
Sbjct: 299 IASAALENDKTIKLWK 314
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 30/176 (17%)
Query: 257 ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT 316
SPNG +LA+++ +K+W + DG + S GHK ++ + ++ +S +++
Sbjct: 36 FSPNGEWLASSSADKLIKIWG---AYDGKFEKTIS-----GHKLGISDVAWSSDSNLLVS 87
Query: 317 ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS 376
AS D TL++W+++ L KTLK + N ++ S I++ +
Sbjct: 88 ASDDKTLKIWDVSSGKCL----KTLKGHSNYVFCCN-----FNPQS----NLIVSGSFDE 134
Query: 377 TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
+++ V+TGK L T AH ++ + + N+ S++ +SS D ++W
Sbjct: 135 SVRIWDVKTGKCLKTLP-AHSDPVSAVHF--------NRDGSLIVSSSYDGLCRIW 181
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 120/268 (44%), Gaps = 38/268 (14%)
Query: 86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRVH-KLDDASSKSFKFLRINLPPGGPPTAV 144
TL GH +V+ + FS +G+ LA++ AD +I++ D K+ ++ + + V
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI------SDV 77
Query: 145 AFADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHH 195
A++ ++ +V A+ + + C + G + QS L E
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 196 KVHD---KRAILTLFG----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDT 247
++ D + + TL SA + DGS I++S +G IW +G+ L +D
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDD 196
Query: 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF 307
+ + SPNG+++ AA +K+W+ YSK +K T GHK+ + F
Sbjct: 197 DNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKGKCLKTYT------GHKNE-KYCIF 247
Query: 308 APNS----EQIITASKDGTLRVWNINVR 331
A S + I++ S+D + +WN+ +
Sbjct: 248 ANFSVTGGKWIVSGSEDNLVYIWNLQTK 275
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
S ++ S S+ + IW +GK L + + +P + + +F V++W+
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 141
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
VK + L H V+ + F + I+++S DG R+W+
Sbjct: 142 -------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 187
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
+ LK L+D + + + + S +GK ILAAT +TL+ GK L T H+
Sbjct: 188 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHK 240
Query: 398 GEITCM 403
E C+
Sbjct: 241 NEKYCI 246
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN 352
L GH AV+ + F+PN E + ++S D +++W D K K + +
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------YDGKFEKTI-------S 68
Query: 353 GATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411
G L ++ SSD +L +A+ TL+ V +GK L T K H + C + P
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP---- 123
Query: 412 MGNQQVSVLATSSVDKKVKLW 432
Q +++ + S D+ V++W
Sbjct: 124 ----QSNLIVSGSFDESVRIW 140
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 30/196 (15%)
Query: 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
+ TL H D V+ + F+ DG + ++ DG+ R+ D AS + K L + P P +
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI--WDTASGQCLKTLIDDDNP--PVSF 203
Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
V F+ N I+ AT + + L+ Y + K + T G HK ++K I
Sbjct: 204 VKFSPNGKYILAATLD-NTLKLWDYSKGKCLKTYTG---------------HK-NEKYCI 246
Query: 204 LTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRF 263
F + G I S SE + IW+ +T +++ + + A P
Sbjct: 247 FANFSVT-------GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 299
Query: 264 LAAAAFTAD--VKVWE 277
+A+AA D +K+W+
Sbjct: 300 IASAALENDKTIKLWK 315
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 30/176 (17%)
Query: 257 ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT 316
SPNG +LA+++ +K+W + DG + S GHK ++ + ++ +S +++
Sbjct: 37 FSPNGEWLASSSADKLIKIWG---AYDGKFEKTIS-----GHKLGISDVAWSSDSNLLVS 88
Query: 317 ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS 376
AS D TL++W+++ L KTLK + N ++ S I++ +
Sbjct: 89 ASDDKTLKIWDVSSGKCL----KTLKGHSNYVFCCN-----FNPQS----NLIVSGSFDE 135
Query: 377 TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
+++ V+TGK L T AH ++ + + N+ S++ +SS D ++W
Sbjct: 136 SVRIWDVKTGKCLKTLP-AHSDPVSAVHF--------NRDGSLIVSSSYDGLCRIW 182
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 118/267 (44%), Gaps = 36/267 (13%)
Query: 86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA 145
TL GH +V+ + FS +G+ LA++ AD +I++ D KF + + VA
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-----KFEKTISGHKLGISDVA 75
Query: 146 FADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHK 196
++ ++ +V A+ + + C + G + QS L E +
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 197 VHD---KRAILTLFG----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDTN 248
+ D + + TL SA + DGS I++S +G IW +G+ L +D +
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDDD 194
Query: 249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFA 308
+ SPNG+++ AA +K+W+ YSK +K T GHK+ + FA
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKGKCLKTYT------GHKNE-KYCIFA 245
Query: 309 PNS----EQIITASKDGTLRVWNINVR 331
S + I++ S+D + +WN+ +
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQTK 272
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 91/215 (42%), Gaps = 28/215 (13%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
S ++ S S+ + IW +GK L + + +P + + +F V++W+
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 138
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
VK + L H V+ + F + I+++S DG R+W+
Sbjct: 139 -------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 184
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
+ LK L+D + + + + S +GK ILAAT +TL+ GK L T H+
Sbjct: 185 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHK 237
Query: 398 GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
E C+ +A ++ G VS S D V +W
Sbjct: 238 NEKYCI-FANFSVTGGKWIVS----GSEDNLVYIW 267
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN 352
L GH AV+ + F+PN E + ++S D +++W D K K + +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------YDGKFEKTI-------S 65
Query: 353 GATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411
G L ++ SSD +L +A+ TL+ V +GK L T K H + C + P
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP---- 120
Query: 412 MGNQQVSVLATSSVDKKVKLW 432
Q +++ + S D+ V++W
Sbjct: 121 ----QSNLIVSGSFDESVRIW 137
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 28/189 (14%)
Query: 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
+ TL H D V+ + F+ DG + ++ DG+ R+ D AS + K L + P P +
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI--WDTASGQCLKTLIDDDNP--PVSF 200
Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
V F+ N I+ AT + + L+ Y + K + T G HK ++K I
Sbjct: 201 VKFSPNGKYILAATLD-NTLKLWDYSKGKCLKTYTG---------------HK-NEKYCI 243
Query: 204 LTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRF 263
F + G I S SE + IW+ +T +++ + + A P
Sbjct: 244 FANFSVT-------GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 264 LAAAAFTAD 272
+A+AA D
Sbjct: 297 IASAALEND 305
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 30/176 (17%)
Query: 257 ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT 316
SPNG +LA+++ +K+W + DG + S GHK ++ + ++ +S +++
Sbjct: 34 FSPNGEWLASSSADKLIKIWG---AYDGKFEKTIS-----GHKLGISDVAWSSDSNLLVS 85
Query: 317 ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS 376
AS D TL++W+++ L KTLK + N ++ S I++ +
Sbjct: 86 ASDDKTLKIWDVSSGKCL----KTLKGHSNYVFCCN-----FNPQS----NLIVSGSFDE 132
Query: 377 TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
+++ V+TGK L T AH ++ + + N+ S++ +SS D ++W
Sbjct: 133 SVRIWDVKTGKCLKTLP-AHSDPVSAVHF--------NRDGSLIVSSSYDGLCRIW 179
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 118/267 (44%), Gaps = 36/267 (13%)
Query: 86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA 145
TL GH +V+ + FS +G+ LA++ AD +I++ D KF + + VA
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-----KFEKTISGHKLGISDVA 75
Query: 146 FADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHK 196
++ ++ +V A+ + + C + G + QS L E +
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 197 VHD---KRAILTLFG----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDTN 248
+ D + + TL SA + DGS I++S +G IW +G+ L +D +
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDDD 194
Query: 249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFA 308
+ SPNG+++ AA +K+W+ YSK +K T GHK+ + FA
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKGKCLKTYT------GHKNE-KYCIFA 245
Query: 309 PNS----EQIITASKDGTLRVWNINVR 331
S + I++ S+D + +WN+ +
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQTK 272
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 91/215 (42%), Gaps = 28/215 (13%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
S ++ S S+ + IW +GK L + + +P + + +F V++W+
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 138
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
VK + L H V+ + F + I+++S DG R+W+
Sbjct: 139 -------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 184
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
+ LK L+D + + + + S +GK ILAAT +TL+ GK L T H+
Sbjct: 185 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHK 237
Query: 398 GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
E C+ +A ++ G VS S D V +W
Sbjct: 238 NEKYCI-FANFSVTGGKWIVS----GSEDNLVYIW 267
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN 352
L GH AV+ + F+PN E + ++S D +++W D K K + +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------YDGKFEKTI-------S 65
Query: 353 GATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411
G L ++ SSD +L +A+ TL+ V +GK L T K H + C + P
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP---- 120
Query: 412 MGNQQVSVLATSSVDKKVKLW 432
Q +++ + S D+ V++W
Sbjct: 121 ----QSNLIVSGSFDESVRIW 137
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 28/189 (14%)
Query: 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
+ TL H D V+ + F+ DG + ++ DG+ R+ D AS + K L + P P +
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI--WDTASGQCLKTLIDDDNP--PVSF 200
Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
V F+ N I+ AT + + L+ Y + K + T G HK ++K I
Sbjct: 201 VKFSPNGKYILAATLD-NTLKLWDYSKGKCLKTYTG---------------HK-NEKYCI 243
Query: 204 LTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRF 263
F + G I S SE + IW+ +T +++ + + A P
Sbjct: 244 FANFSVT-------GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 264 LAAAAFTAD 272
+A+AA D
Sbjct: 297 IASAALEND 305
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 30/176 (17%)
Query: 257 ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT 316
SPNG +LA+++ +K+W + DG + S GHK ++ + ++ +S +++
Sbjct: 34 FSPNGEWLASSSADKLIKIWG---AYDGKFEKTIS-----GHKLGISDVAWSSDSNLLVS 85
Query: 317 ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS 376
AS D TL++W+++ L KTLK + N ++ S I++ +
Sbjct: 86 ASDDKTLKIWDVSSGKCL----KTLKGHSNYVFCCN-----FNPQS----NLIVSGSFDE 132
Query: 377 TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
+++ V+TGK L T AH ++ + + N+ S++ +SS D ++W
Sbjct: 133 SVRIWDVKTGKCLKTLP-AHSDPVSAVHF--------NRDGSLIVSSSYDGLCRIW 179
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 117/267 (43%), Gaps = 36/267 (13%)
Query: 86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA 145
TL GH +V+ + FS +G+ LA + AD +I++ D KF + + VA
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDG-----KFEKTISGHKLGISDVA 75
Query: 146 FADNATSIVVATHNLS---------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHK 196
++ ++ +V A+ + + C + G + QS L E +
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 197 VHD---KRAILTLFG----ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDTN 248
+ D + + TL SA + DGS I++S +G IW +G+ L +D +
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDDD 194
Query: 249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFA 308
+ SPNG+++ AA +K+W+ YSK +K T GHK+ + FA
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKGKCLKTYT------GHKNE-KYCIFA 245
Query: 309 PNS----EQIITASKDGTLRVWNINVR 331
S + I++ S+D + +WN+ +
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQTK 272
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 91/215 (42%), Gaps = 28/215 (13%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
S ++ S S+ + IW +GK L + + +P + + +F V++W+
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 138
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDP 338
VK + L H V+ + F + I+++S DG R+W+
Sbjct: 139 -------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASG 184
Query: 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHE 397
+ LK L+D + + + + S +GK ILAAT +TL+ GK L T H+
Sbjct: 185 QCLKT----LIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHK 237
Query: 398 GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
E C+ +A ++ G VS S D V +W
Sbjct: 238 NEKYCI-FANFSVTGGKWIVS----GSEDNLVYIW 267
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 24/141 (17%)
Query: 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN 352
L GH AV+ + F+PN E + +S D +++W D K K + +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGA-------YDGKFEKTI-------S 65
Query: 353 GATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411
G L ++ SSD +L +A+ TL+ V +GK L T K H + C + P
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP---- 120
Query: 412 MGNQQVSVLATSSVDKKVKLW 432
Q +++ + S D+ V++W
Sbjct: 121 ----QSNLIVSGSFDESVRIW 137
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 30/196 (15%)
Query: 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
+ TL H D V+ + F+ DG + ++ DG+ R+ D AS + K L + P P +
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI--WDTASGQCLKTLIDDDNP--PVSF 200
Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
V F+ N I+ AT + + L+ Y + K + T G HK ++K I
Sbjct: 201 VKFSPNGKYILAATLD-NTLKLWDYSKGKCLKTYTG---------------HK-NEKYCI 243
Query: 204 LTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRF 263
F + G I S SE + IW+ +T +++ + + A P
Sbjct: 244 FANFSVT-------GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 264 LAAAAFTAD--VKVWE 277
+A+AA D +K+W+
Sbjct: 297 IASAALENDKTIKLWK 312
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 85/176 (48%), Gaps = 30/176 (17%)
Query: 257 ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT 316
SPNG +LAA++ +K+W + DG + S GHK ++ + ++ +S +++
Sbjct: 34 FSPNGEWLAASSADKLIKIWG---AYDGKFEKTIS-----GHKLGISDVAWSSDSNLLVS 85
Query: 317 ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS 376
AS D TL++W+++ L KTLK + N ++ S I++ +
Sbjct: 86 ASDDKTLKIWDVSSGKCL----KTLKGHSNYVFCCN-----FNPQS----NLIVSGSFDE 132
Query: 377 TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
+++ V+TGK L T AH ++ + + N+ S++ +SS D ++W
Sbjct: 133 SVRIWDVKTGKCLKTLP-AHSDPVSAVHF--------NRDGSLIVSSSYDGLCRIW 179
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 71/375 (18%), Positives = 137/375 (36%), Gaps = 64/375 (17%)
Query: 87 LKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAF 146
+K H D V FS+D + +AT D +++ +S + + + F
Sbjct: 659 IKAHEDEVLCCAFSTDDRFIATCSVDKKVKI-----WNSMTGELVHTYDEHSEQVNCCHF 713
Query: 147 ADNATSIVVATH-----------NLSGCSLYMYGEEKAISTNEGKQQSKL------PGPE 189
+++ +++AT N C M+G +++ KL G
Sbjct: 714 TNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTL 773
Query: 190 IKWEHHKVHDKRAI-LTLFGASATYGTADGSTIIASCSEGTD-----------ISIWHGK 237
W+ +++++I + F + D I+ CS D I ++
Sbjct: 774 KLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIH 833
Query: 238 TGKLLGNVDTNQLKN-NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK 296
T LLG + T SP A V++W + + V +
Sbjct: 834 TSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWN--------TDSRSKVADCR 885
Query: 297 GHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATL 356
GH S V + F+P+ +T+S D T+R+W E K K + L
Sbjct: 886 GHLSWVHGVMFSPDGSSFLTSSDDQTIRLW---------ETKKVCKNSAVMLKQEVDVVF 936
Query: 357 QYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAP--KTIPMGN 414
Q + + +LA H LQ ++ TG++ + E +++C +P + I G+
Sbjct: 937 QENEV------MVLAVDHIRRLQLINGRTGQI----DYLTEAQVSCCCLSPHLQYIAFGD 986
Query: 415 QQVSVLATSSVDKKV 429
+ ++ V+ ++
Sbjct: 987 ENGAIEILELVNNRI 1001
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 82/357 (22%), Positives = 136/357 (38%), Gaps = 76/357 (21%)
Query: 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
V +GH V G+ FS DG T+ D IR+ + S L+
Sbjct: 881 VADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLK-------QEVD 933
Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKW----------E 193
V F +N +V+A ++ L + E + P +++ E
Sbjct: 934 VVFQENEV-MVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIE 992
Query: 194 HHKVHDKRAILTLFGASATY----GTADGSTIIASCSEGTDISIWHGKTGK---LLGNVD 246
++ + R + F T TAD T+I+S S+ +I +W+ + K L G+ +
Sbjct: 993 ILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISS-SDDAEIQVWNWQLDKCIFLRGHQE 1051
Query: 247 TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIV-------------------YSKDGLVK 287
T +K+ + N R L+ + F VKVW I+ S D
Sbjct: 1052 T--VKD--FRLLKNSRLLSWS-FDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKF 1106
Query: 288 AVTS---------------VMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRY 332
+ TS + +L+GH V F+ +S + T +G +R+WN++
Sbjct: 1107 SSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVS--- 1163
Query: 333 HLDEDPKTLKVLPIPLLDSNGATL--QYDRLSLSSDGKILAATHGSTLQWLSVETGK 387
L L PL + AT L S DGK+L + G ++W +V TG+
Sbjct: 1164 -----NGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISA-GGYIKWWNVVTGE 1214
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 48/172 (27%)
Query: 215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVK 274
+ DG I ASC + ++ +TG+ L + ++ + A S + RF+A + VK
Sbjct: 630 SEDGQRI-ASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVK 688
Query: 275 VW-----EIVYSKDG-----------------LVKAVTSVMQLK--------------GH 298
+W E+V++ D L+ +S LK GH
Sbjct: 689 IWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGH 748
Query: 299 KSAVTWLCFAPNSEQIITASKDGTLRVWN---------INVR-YHLD-EDPK 339
++V F+P+ + + + S DGTL++W+ INV+ + L+ EDP+
Sbjct: 749 TNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQ 800
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 12/72 (16%)
Query: 363 LSSDGKILAATHGS-TLQWLSVETG-KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVL 420
S DG+ +A+ TLQ ETG K+L+ KAHE E+ C A++ +
Sbjct: 629 FSEDGQRIASCGADKTLQVFKAETGEKLLEI--KAHEDEVLCCAFSTDD--------RFI 678
Query: 421 ATSSVDKKVKLW 432
AT SVDKKVK+W
Sbjct: 679 ATCSVDKKVKIW 690
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 81 PLDVNTLKGHGDSVTGLCFSSDGKCLATA 109
PL HG VT LCFS DGK L +A
Sbjct: 1173 PLSEEGAATHGGWVTDLCFSPDGKMLISA 1201
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Query: 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315
SP+G+FLA A +++W+I K VM L+GH+ + L + P+ ++++
Sbjct: 130 CFSPDGKFLATGAEDRLIRIWDIENRK--------IVMILQGHEQDIYSLDYFPSGDKLV 181
Query: 316 TASKDGTLRVWNI 328
+ S D T+R+W++
Sbjct: 182 SGSGDRTVRIWDL 194
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 111/245 (45%), Gaps = 28/245 (11%)
Query: 90 HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADN 149
H V + FS+DG+ LAT C + +V+++ D S L L A +N
Sbjct: 63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGS------LVARLSDDS--AANKDPEN 113
Query: 150 ATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGA 209
+ + +L S+ + K ++T + ++ W+ + +++ ++ L G
Sbjct: 114 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRI------WD---IENRKIVMILQGH 164
Query: 210 SATYGTAD----GSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLA 265
+ D G +++ + T + IW +TG+ + +A +G+++A
Sbjct: 165 EQDIYSLDYFPSGDKLVSGSGDRT-VRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIA 223
Query: 266 AAAFTADVKVWEIVYSKDG-LVKAVTSVMQL-KGHKSAVTWLCFAPNSEQIITASKDGTL 323
A + V+VW+ S+ G LV+ + S + GHK +V + F + + +++ S D ++
Sbjct: 224 AGSLDRAVRVWD---SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 280
Query: 324 RVWNI 328
++WN+
Sbjct: 281 KLWNL 285
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 44/245 (17%), Positives = 91/245 (37%), Gaps = 43/245 (17%)
Query: 94 VTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSI 153
+ +CFS DGK LAT D +IR+ ++ + +
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIE--------------------------NRKIVM 159
Query: 154 VVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATY 213
++ H SL + + + G + ++ W+ + G +
Sbjct: 160 ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI------WDLRTGQCSLTLSIEDGVTTVA 213
Query: 214 GTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQL-----KNNMAAI--SPNGRFLAA 266
+ IA+ S + +W +TG L+ +D+ K+++ ++ + +G+ + +
Sbjct: 214 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 273
Query: 267 AAFTADVKVWEIVY----SKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGT 322
+ VK+W + S + T + GHK V + N E I++ SKD
Sbjct: 274 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 333
Query: 323 LRVWN 327
+ W+
Sbjct: 334 VLFWD 338
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 89 GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKS 127
GH DSV + F+ DG+ + + D +++ L +A++KS
Sbjct: 254 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 292
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 98/218 (44%), Gaps = 30/218 (13%)
Query: 220 TIIASCSEGTDISIWHGKTGKLLGNV---DTNQLKNNMAAISPNGRFLAAAAFTADVKVW 276
T++ASC I IW + + + +Q A SP G +LA+A+F A +W
Sbjct: 29 TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW 88
Query: 277 EIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDE 336
+ ++D V L+GH++ V + +AP+ + T S+D ++ VW ++ ++
Sbjct: 89 K--KNQDDF----ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE----ED 138
Query: 337 DPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA-ATHGSTLQ-WLSVETGKVLDTAEK 394
+ + + VL N T + ++LA A++ T++ + E V +
Sbjct: 139 EYECVSVL-------NSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLE 191
Query: 395 AHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
HE + W+ P G + LA+ S D+ V++W
Sbjct: 192 GHESTV----WSLAFDPSGQR----LASCSDDRTVRIW 221
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 94/235 (40%), Gaps = 35/235 (14%)
Query: 216 ADGSTIIASCSEGTDISIWH---GKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTAD 272
A ++A+CS + +W + + ++++ P+ LA+A++
Sbjct: 114 APSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDT 173
Query: 273 VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRY 332
VK++ +D V T L+GH+S V L F P+ +++ + S D T+R+W R
Sbjct: 174 VKLYR--EEEDDWVCCAT----LEGHESTVWSLAFDPSGQRLASCSDDRTVRIW----RQ 223
Query: 333 HLDEDPKTLKV-------LPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVE- 384
+L + + + I L + YD G + A ++ +
Sbjct: 224 YLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDP 283
Query: 385 -------TGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
T + +AH ++ C+AW PK + +LA+ S D +V W
Sbjct: 284 NSDPQQPTFSLTAHLHQAHSQDVNCVAWNPK-------EPGLLASCSDDGEVAFW 331
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 60/111 (54%), Gaps = 8/111 (7%)
Query: 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
S +A+ + ++I+ ++GK ++DT A SP+G++LA+ A + +++I
Sbjct: 134 SQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI 193
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNIN 329
K + L+GH + L F+P+S+ ++TAS DG ++++++
Sbjct: 194 ATGK--------LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ 236
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 104/257 (40%), Gaps = 45/257 (17%)
Query: 78 RHHPLDVN-TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLP 136
R LD+ +L+GH V + S A++ D IR+ L++ +I
Sbjct: 66 RDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK-------QIKSI 118
Query: 137 PGGPPTA--VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEH 194
GP A +AF+ ++ + TH G+ GK++ L
Sbjct: 119 DAGPVDAWTLAFSPDSQYLATGTH---------VGKVNIFGVESGKKEYSL--------- 160
Query: 195 HKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNM 254
D R L S Y + DG + + +G I+I+ TGKLL ++ + +
Sbjct: 161 ----DTRGKFIL---SIAY-SPDGKYLASGAIDGI-INIFDIATGKLLHTLEGHAMPIRS 211
Query: 255 AAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQI 314
SP+ + L A+ +K+++ V+ L GH S V + F P+
Sbjct: 212 LTFSPDSQLLVTASDDGYIKIYD--------VQHANLAGTLSGHASWVLNVAFCPDDTHF 263
Query: 315 ITASKDGTLRVWNINVR 331
+++S D +++VW++ R
Sbjct: 264 VSSSSDKSVKVWDVGTR 280
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Query: 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315
A+S NG F +A++ +++W + ++G + + GH V + F+P++ QI+
Sbjct: 74 ALSNNGNFAVSASWDHSLRLWNL---QNGQCQ-----YKFLGHTKDVLSVAFSPDNRQIV 125
Query: 316 TASKDGTLRVWNI 328
+ +D LRVWN+
Sbjct: 126 SGGRDNALRVWNV 138
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
V LKGH + VT + S DG A++ DGV R+ L + S + G P
Sbjct: 189 VTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALS------EMAAGAPINQ 242
Query: 144 VAFADNATSIVVAT 157
+ F+ N + AT
Sbjct: 243 ICFSPNRYWMCAAT 256
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 273 VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNI 328
VKVW++ + V LKGH + VT + +P+ ++ KDG R+W++
Sbjct: 178 VKVWDLATGR--------LVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDL 225
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 23/141 (16%)
Query: 294 QLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNG 353
+L+GH + V+ + + N ++AS D +LR+WN L K L G
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWN------LQNGQCQYKFL--------G 107
Query: 354 ATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEK-AHEGEITCMAWAPKTIP 411
T ++ S D + I++ + L+ +V+ G+ + T + AH ++C+ ++P
Sbjct: 108 HTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSL-- 164
Query: 412 MGNQQVSVLATSSVDKKVKLW 432
V+ + D VK+W
Sbjct: 165 ----DAPVIVSGGWDNLVKVW 181
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 46/257 (17%), Positives = 103/257 (40%), Gaps = 39/257 (15%)
Query: 72 DKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFL 131
D+ ++ + L L+GH V+ + S++G +A D +R+ L + + +KFL
Sbjct: 48 DRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQ-YKFL 106
Query: 132 RINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIK 191
+VAF+ + IV SG G + A+ K +
Sbjct: 107 GHT----KDVLSVAFSPDNRQIV------SG------GRDNALRVWNVKGECM------- 143
Query: 192 WEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLK 251
H + R T + + + + + +I S + +W TG+L+ ++ +
Sbjct: 144 ---HTL--SRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNY 198
Query: 252 NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS 311
+SP+G A++ ++W++ + + + + +CF+PN
Sbjct: 199 VTSVTVSPDGSLCASSDKDGVARLWDLTKGE---------ALSEMAAGAPINQICFSPNR 249
Query: 312 EQIITASKDGTLRVWNI 328
+ A++ G +R++++
Sbjct: 250 YWMCAATEKG-IRIFDL 265
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315
+++P+ R + A A K+W++ ++G+ + GH+S + +CF PN
Sbjct: 202 SLAPDTRLFVSGACDASAKLWDV---REGMCRQT-----FTGHESDINAICFFPNGNAFA 253
Query: 316 TASKDGTLRVWNINVRYHL 334
T S D T R++++ L
Sbjct: 254 TGSDDATCRLFDLRADQEL 272
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 55/297 (18%), Positives = 100/297 (33%), Gaps = 61/297 (20%)
Query: 86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRV------HKLDDASSKSFKFLRINLPPGG 139
TL+GH + + + +D + L +A DG + + +K+ +S + P G
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 120
Query: 140 PPTAVAFADNATSI---------VVATHNLSGCSLYM----YGEEKAISTNEGKQQSKLP 186
A DN SI V + L+G + Y+ + ++ I T+ G L
Sbjct: 121 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL- 179
Query: 187 GPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD 246
W+ G + A + + S + +W + G
Sbjct: 180 -----WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 234
Query: 247 TNQLKNNMAAISPNGRFLAAAAFTADVKVWEI-------VYSKDGLVKAVTSVM------ 293
++ N PNG A + A +++++ YS D ++ +TSV
Sbjct: 235 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 294
Query: 294 -----------------------QLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN 327
L GH + V+ L + + T S D L++WN
Sbjct: 295 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315
+++P+ R + A A K+W++ ++G+ + GH+S + +CF PN
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDV---REGMCRQT-----FTGHESDINAICFFPNGNAFA 242
Query: 316 TASKDGTLRVWNINVRYHL 334
T S D T R++++ L
Sbjct: 243 TGSDDATCRLFDLRADQEL 261
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 55/297 (18%), Positives = 100/297 (33%), Gaps = 61/297 (20%)
Query: 86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRV------HKLDDASSKSFKFLRINLPPGG 139
TL+GH + + + +D + L +A DG + + +K+ +S + P G
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 140 PPTAVAFADNATSI---------VVATHNLSGCSLYM----YGEEKAISTNEGKQQSKLP 186
A DN SI V + L+G + Y+ + ++ I T+ G L
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL- 168
Query: 187 GPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD 246
W+ G + A + + S + +W + G
Sbjct: 169 -----WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223
Query: 247 TNQLKNNMAAISPNGRFLAAAAFTADVKVWEI-------VYSKDGLVKAVTSVM------ 293
++ N PNG A + A +++++ YS D ++ +TSV
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 294 -----------------------QLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN 327
L GH + V+ L + + T S D L++WN
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 87/208 (41%), Gaps = 31/208 (14%)
Query: 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143
+ TL+GH V GL + SDG LA+ D V+++ DA S KF + N A
Sbjct: 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIW---DARSSIPKFTKTNH--NAAVKA 264
Query: 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAI 203
VA+ ++++ ++ + N S++ + W H + I
Sbjct: 265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQV--TSLIWSPH----SKEI 318
Query: 204 LTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD--TNQLKNNMAAISPNG 261
++ T+G D ++SIW + L VD + + +A+SP+G
Sbjct: 319 MS------THGFPD-----------NNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDG 361
Query: 262 RFLAAAAFTADVKVWEIVYSKDGLVKAV 289
R L+ AA ++K W VY D + + +
Sbjct: 362 RILSTAASDENLKFWR-VYDGDHVKRPI 388
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315
+++P+ R + A A K+W++ ++G+ + GH+S + +CF PN
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDV---REGMCRQT-----FTGHESDINAICFFPNGNAFA 242
Query: 316 TASKDGTLRVWNINVRYHL 334
T S D T R++++ L
Sbjct: 243 TGSDDATCRLFDLRADQEL 261
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 55/297 (18%), Positives = 100/297 (33%), Gaps = 61/297 (20%)
Query: 86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRV------HKLDDASSKSFKFLRINLPPGG 139
TL+GH + + + +D + L +A DG + + +K+ +S + P G
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 140 PPTAVAFADNATSI---------VVATHNLSGCSLYM----YGEEKAISTNEGKQQSKLP 186
A DN SI V + L+G + Y+ + ++ I T+ G L
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL- 168
Query: 187 GPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD 246
W+ G + A + + S + +W + G
Sbjct: 169 -----WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223
Query: 247 TNQLKNNMAAISPNGRFLAAAAFTADVKVWEI-------VYSKDGLVKAVTSVM------ 293
++ N PNG A + A +++++ YS D ++ +TSV
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 294 -----------------------QLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN 327
L GH + V+ L + + T S D L++WN
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315
+++P+ R + A A K+W++ ++G+ + GH+S + +CF PN
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDV---REGMCRQT-----FTGHESDINAICFFPNGNAFA 242
Query: 316 TASKDGTLRVWNINVRYHL 334
T S D T R++++ L
Sbjct: 243 TGSDDATCRLFDLRADQEL 261
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 55/297 (18%), Positives = 100/297 (33%), Gaps = 61/297 (20%)
Query: 86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRV------HKLDDASSKSFKFLRINLPPGG 139
TL+GH + + + +D + L +A DG + + +K+ +S + P G
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 140 PPTAVAFADNATSI---------VVATHNLSGCSLYM----YGEEKAISTNEGKQQSKLP 186
A DN SI V + L+G + Y+ + ++ I T+ G L
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL- 168
Query: 187 GPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD 246
W+ G + A + + S + +W + G
Sbjct: 169 -----WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223
Query: 247 TNQLKNNMAAISPNGRFLAAAAFTADVKVWEI-------VYSKDGLVKAVTSVM------ 293
++ N PNG A + A +++++ YS D ++ +TSV
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 294 -----------------------QLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN 327
L GH + V+ L + + T S D L++WN
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315
+++P+ R + A A K+W++ ++G+ + GH+S + +CF PN
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDV---REGMCRQT-----FTGHESDINAICFFPNGNAFA 242
Query: 316 TASKDGTLRVWNINVRYHL 334
T S D T R++++ L
Sbjct: 243 TGSDDATCRLFDLRADQEL 261
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 55/297 (18%), Positives = 100/297 (33%), Gaps = 61/297 (20%)
Query: 86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRV------HKLDDASSKSFKFLRINLPPGG 139
TL+GH + + + +D + L +A DG + + +K+ +S + P G
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 140 PPTAVAFADNATSI---------VVATHNLSGCSLYM----YGEEKAISTNEGKQQSKLP 186
A DN SI V + L+G + Y+ + ++ I T+ G L
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL- 168
Query: 187 GPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD 246
W+ G + A + + S + +W + G
Sbjct: 169 -----WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223
Query: 247 TNQLKNNMAAISPNGRFLAAAAFTADVKVWEI-------VYSKDGLVKAVTSVM------ 293
++ N PNG A + A +++++ YS D ++ +TSV
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 294 -----------------------QLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN 327
L GH + V+ L + + T S D L++WN
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 15/117 (12%)
Query: 217 DGSTIIASCSEGTDISIWH-GKTGKLLGNVDTNQLKNNM-----AAISPNGRFLAAAAFT 270
D + II S S I +W K K G V +L + +S +G+F + ++
Sbjct: 393 DNADIIVSASRDKSIILWKLTKDDKAYG-VAQRRLTGHSHFVEDVVLSSDGQFALSGSWD 451
Query: 271 ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN 327
++++W++ A S + GH V + F+ ++ QI++AS+D T+++WN
Sbjct: 452 GELRLWDLA--------AGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 500
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 10/110 (9%)
Query: 222 IASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYS 281
I S S + +W+ KL + + + A+SP+G A+ V +W++
Sbjct: 534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG 593
Query: 282 KDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVR 331
K SV+ LCF+PN + A++ G +++W++ +
Sbjct: 594 KKLYSLEANSVIHA---------LCFSPNRYWLCAATEHG-IKIWDLESK 633
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/180 (20%), Positives = 77/180 (42%), Gaps = 34/180 (18%)
Query: 260 NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK 319
N + +A+ + +W++ +KD V +L GH V + + + + ++ S
Sbjct: 394 NADIIVSASRDKSIILWKL--TKDDKAYGVAQ-RRLTGHSHFVEDVVLSSDGQFALSGSW 450
Query: 320 DGTLRVWN----INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATH 374
DG LR+W+ ++ R + L V + S D + I++A+
Sbjct: 451 DGELRLWDLAAGVSTRRFVGHTKDVLSV------------------AFSLDNRQIVSASR 492
Query: 375 GSTLQ-WLSV-ETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
T++ W ++ E + + H ++C+ ++P T+ + ++S DK VK+W
Sbjct: 493 DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ------PTIVSASWDKTVKVW 546
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 19/129 (14%)
Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVW 276
DGS + +G + +W GK L +++ N + + + SPN R+ AA +K+W
Sbjct: 572 DGSLCASGGKDGV-VLLWDLAEGKKLYSLEANSVIHALC-FSPN-RYWLCAATEHGIKIW 628
Query: 277 EIVYSKDGLVKAVTSVMQLKGHKS-------------AVTWLCFAPNSEQIITASKDGTL 323
++ +V+ + ++ + K+ T L ++ + + + DG +
Sbjct: 629 DL--ESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVI 686
Query: 324 RVWNINVRY 332
RVW I RY
Sbjct: 687 RVWGIG-RY 694
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 259 PNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS 318
P+ ++ A+ +K+W+ + + V L+GH S V++ F P II+ S
Sbjct: 196 PDKPYMITASDDLTIKIWDY--------QTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Query: 319 KDGTLRVWN 327
+DGTL++WN
Sbjct: 248 EDGTLKIWN 256
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 369 ILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKK 428
+L+ + T++ + E L+ + HE + C+A+ PK S A+ +D+
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK-------DPSTFASGCLDRT 164
Query: 429 VKLW 432
VK+W
Sbjct: 165 VKVW 168
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 259 PNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS 318
P+ ++ A+ +K+W+ + + V L+GH S V++ F P II+ S
Sbjct: 196 PDKPYMITASDDLTIKIWD--------YQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Query: 319 KDGTLRVWN 327
+DGTL++WN
Sbjct: 248 EDGTLKIWN 256
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 369 ILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKK 428
+L+ + T++ + E L+ + HE + C+A+ PK S A+ +D+
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK-------DPSTFASGCLDRT 164
Query: 429 VKLW 432
VK+W
Sbjct: 165 VKVW 168
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 259 PNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS 318
P+ ++ A+ +K+W+ + + V L+GH S V++ F P II+ S
Sbjct: 196 PDKPYMITASDDLTIKIWD--------YQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Query: 319 KDGTLRVWN 327
+DGTL++WN
Sbjct: 248 EDGTLKIWN 256
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 369 ILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKK 428
+L+ + T++ + E L+ + HE + C+A+ PK S A+ +D+
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK-------DPSTFASGCLDRT 164
Query: 429 VKLW 432
VK+W
Sbjct: 165 VKVW 168
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 259 PNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS 318
P+ ++ A+ +K+W+ + + V L+GH S V++ F P II+ S
Sbjct: 196 PDKPYMITASDDLTIKIWD--------YQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Query: 319 KDGTLRVWN 327
+DGTL++WN
Sbjct: 248 EDGTLKIWN 256
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 369 ILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKK 428
+L+ + T++ + E L+ + HE + C+A+ PK S A+ +D+
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK-------DPSTFASGCLDRT 164
Query: 429 VKLW 432
VK+W
Sbjct: 165 VKVW 168
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 15/110 (13%)
Query: 222 IASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYS 281
+ S S T I +W +TG + + +Q + + N L + + VK+W+I
Sbjct: 292 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDI--- 346
Query: 282 KDGLVKAVTSVMQLKG---HKSAVTWLCFAPNSEQIITASKDGTLRVWNI 328
K + L+G H+SAVT C N +IT+S DGT+++W++
Sbjct: 347 -----KTGQCLQTLQGPNKHQSAVT--CLQFNKNFVITSSDDGTVKLWDL 389
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 26/114 (22%)
Query: 222 IASCSEGTDISIWHGKTGKLL-------GNVDTNQLKNNMAAISPNGRFLAAAAFTADVK 274
I S S+ + +W TGK L G V ++Q+++N+ R L K
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTL---------K 182
Query: 275 VWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNI 328
VW + + L GH S V C + +++++ S+D TLRVW+I
Sbjct: 183 VWN--------AETGECIHTLYGHTSTVR--CMHLHEKRVVSGSRDATLRVWDI 226
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 202 AILTLFG-ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDT-NQLKNNMAAISP 259
I TL G S T G I+ S + + + IW KTG+ L + N+ ++ + +
Sbjct: 311 CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF 370
Query: 260 NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK-GHKSAVTWLCFAPNSEQII-TA 317
N F+ ++ VK+W++ K G + + +++ L+ G V W A N++ +
Sbjct: 371 NKNFVITSSDDGTVKLWDL---KTG--EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG 425
Query: 318 SKDGT 322
S++GT
Sbjct: 426 SRNGT 430
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
Query: 295 LKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGA 354
LKGH V C +I++ S D TL+VW+ T K L + + G
Sbjct: 114 LKGHDDHVI-TCLQFCGNRIVSGSDDNTLKVWS----------AVTGKCLRTLVGHTGGV 162
Query: 355 TLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGN 414
R D I++ + TL+ + ETG+ + T H + CM K + G+
Sbjct: 163 WSSQMR-----DNIIISGSTDRTLKVWNAETGECIHTL-YGHTSTVRCMHLHEKRVVSGS 216
Query: 415 QQVSV 419
+ ++
Sbjct: 217 RDATL 221
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 255 AAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQI 314
IS +G+F + ++ +++W++ T+ + GH V + F+ ++ QI
Sbjct: 92 VVISSDGQFALSGSWDGTLRLWDLTTG--------TTTRRFVGHTKDVLSVAFSSDNRQI 143
Query: 315 ITASKDGTLRVWN 327
++ S+D T+++WN
Sbjct: 144 VSGSRDKTIKLWN 156
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 24/160 (15%)
Query: 277 EIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPN-SEQIITASKDGTLRVWNINVRYHLD 335
E +Y + + + +T LKGH VT + P + I++AS+D T+ +W + D
Sbjct: 16 ENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLT----RD 71
Query: 336 EDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKI-LAATHGSTLQWLSVETGKVLDTAEK 394
E IP G + + +SSDG+ L+ + TL+ + TG T +
Sbjct: 72 ETN-----YGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGT---TTRR 123
Query: 395 --AHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
H ++ +A++ N+Q+ + S DK +KLW
Sbjct: 124 FVGHTKDVLSVAFSSD-----NRQI---VSGSRDKTIKLW 155
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 65/140 (46%), Gaps = 23/140 (16%)
Query: 295 LKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGA 354
L+GH V+ + + + + ++ S DGTLR+W+ L T + + G
Sbjct: 82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD------LTTGTTTRRFV--------GH 127
Query: 355 TLQYDRLSLSSDGK-ILAATHGSTLQ-WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPM 412
T ++ SSD + I++ + T++ W ++ K +++H ++C+ ++P
Sbjct: 128 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK-YTVQDESHSEWVSCVRFSP----- 181
Query: 413 GNQQVSVLATSSVDKKVKLW 432
N ++ + DK VK+W
Sbjct: 182 -NSSNPIIVSCGWDKLVKVW 200
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 255 AAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQI 314
IS +G+F + ++ +++W++ T+ + GH V + F+ ++ QI
Sbjct: 69 VVISSDGQFALSGSWDGTLRLWDLTTG--------TTTRRFVGHTKDVLSVAFSSDNRQI 120
Query: 315 ITASKDGTLRVWN 327
++ S+D T+++WN
Sbjct: 121 VSGSRDKTIKLWN 133
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 65/140 (46%), Gaps = 23/140 (16%)
Query: 295 LKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGA 354
L+GH V+ + + + + ++ S DGTLR+W+ L T + + G
Sbjct: 59 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD------LTTGTTTRRFV--------GH 104
Query: 355 TLQYDRLSLSSDGK-ILAATHGSTLQ-WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPM 412
T ++ SSD + I++ + T++ W ++ K +++H ++C+ ++P
Sbjct: 105 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK-YTVQDESHSEWVSCVRFSP----- 158
Query: 413 GNQQVSVLATSSVDKKVKLW 432
N ++ + DK VK+W
Sbjct: 159 -NSSNPIIVSCGWDKLVKVW 177
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 24/142 (16%)
Query: 295 LKGHKSAVTWLCFAPN-SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNG 353
LKGH VT + P + I++AS+D T+ +W + DE IP G
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLT----RDETN-----YGIPQRALRG 61
Query: 354 ATLQYDRLSLSSDGKI-LAATHGSTLQWLSVETGKVLDTAEK--AHEGEITCMAWAPKTI 410
+ + +SSDG+ L+ + TL+ + TG T + H ++ +A++
Sbjct: 62 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGT---TTRRFVGHTKDVLSVAFSSD-- 116
Query: 411 PMGNQQVSVLATSSVDKKVKLW 432
N+Q+ + S DK +KLW
Sbjct: 117 ---NRQI---VSGSRDKTIKLW 132
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 64/125 (51%), Gaps = 10/125 (8%)
Query: 204 LTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRF 263
++LFG ++ +GT+ G+++ S + + K ++ + D + + + + G F
Sbjct: 1 MSLFGTTSGFGTS-GTSMFGSATTDNHNPM---KDIEVTSSPDDSIGCLSFSPPTLPGNF 56
Query: 264 LAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTL 323
L A ++ DV+ WE+ S + KA Q+ H V +C++ + ++ TAS D T
Sbjct: 57 LIAGSWANDVRCWEVQDSGQTIPKA----QQM--HTGPVLDVCWSDDGSKVFTASCDKTA 110
Query: 324 RVWNI 328
++W++
Sbjct: 111 KMWDL 115
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 239 GKLLGNVDTNQLKNNMAAISPNGR-FLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG 297
GK L N+ ++ K A++P FLA A+ VK+W++ V+ S +
Sbjct: 240 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ-----VRGKASFLYSLP 294
Query: 298 HKSAVTWLCFAPNSEQIITASKDGTLRVWN 327
H+ V CF+P+ +++T + +RV++
Sbjct: 295 HRHPVNAACFSPDGARLLTTDQKSEIRVYS 324
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 239 GKLLGNVDTNQLKNNMAAISPNGR-FLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG 297
GK L N+ ++ K A++P FLA A+ VK+W++ V+ S +
Sbjct: 241 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ-----VRGKASFLYSLP 295
Query: 298 HKSAVTWLCFAPNSEQIITASKDGTLRVWN 327
H+ V CF+P+ +++T + +RV++
Sbjct: 296 HRHPVNAACFSPDGARLLTTDQKSEIRVYS 325
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 239 GKLLGNVDTNQLKNNMAAISPNGR-FLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG 297
GK L N+ ++ K A++P FLA A+ VK+W++ V+ S +
Sbjct: 240 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ-----VRGKASFLYSLP 294
Query: 298 HKSAVTWLCFAPNSEQIITASKDGTLRVWN 327
H+ V CF+P+ +++T + +RV++
Sbjct: 295 HRHPVNAACFSPDGARLLTTDQKSEIRVYS 324
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 19/145 (13%)
Query: 293 MQLKGHKSAVTWLCFAPN-SEQIITASKDGTLRVWNINV--RYHLDEDPKTLKVLPIPLL 349
++L+GH+ L + PN + +++AS D T+ +W+IN + H D K + ++
Sbjct: 179 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVV 238
Query: 350 DSNGATLQYDRL--SLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAP 407
+ L ++ L S++ D K++ + T K T + AH E+ C+++ P
Sbjct: 239 EDVAWHLLHESLFGSVADDQKLMIWDTRNN------NTSKPSHTVD-AHTAEVNCLSFNP 291
Query: 408 KTIPMGNQQVSVLATSSVDKKVKLW 432
+ +LAT S DK V LW
Sbjct: 292 YS-------EFILATGSADKTVALW 309
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 61/129 (47%), Gaps = 13/129 (10%)
Query: 221 IIASCSEGTDISIWHGKTGKL-LGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEI 278
I+A+ S +++W + KL L + ++++ + SP N LA++ + VW++
Sbjct: 296 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Query: 279 VYSKDGLVKAVTS--------VMQLKGHKSAVTWLCFAPNSEQII-TASKDGTLRVWNIN 329
SK G ++ + GH + ++ + PN II + S+D ++VW +
Sbjct: 356 --SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 413
Query: 330 VRYHLDEDP 338
+ DE+P
Sbjct: 414 ENVYNDEEP 422
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 19/145 (13%)
Query: 293 MQLKGHKSAVTWLCFAPN-SEQIITASKDGTLRVWNINV--RYHLDEDPKTLKVLPIPLL 349
++L+GH+ L + PN + +++AS D T+ +W+IN + H D K + ++
Sbjct: 177 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVV 236
Query: 350 DSNGATLQYDRL--SLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAP 407
+ L ++ L S++ D K++ + T K T + AH E+ C+++ P
Sbjct: 237 EDVAWHLLHESLFGSVADDQKLMIWDTRNN------NTSKPSHTVD-AHTAEVNCLSFNP 289
Query: 408 KTIPMGNQQVSVLATSSVDKKVKLW 432
+ +LAT S DK V LW
Sbjct: 290 YS-------EFILATGSADKTVALW 307
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 69/145 (47%), Gaps = 17/145 (11%)
Query: 221 IIASCSEGTDISIWHGKTGKL-LGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEI 278
I+A+ S +++W + KL L + ++++ + SP N LA++ + VW++
Sbjct: 294 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Query: 279 VYSKDGLVKAVTS--------VMQLKGHKSAVTWLCFAPNSEQII-TASKDGTLRVWNIN 329
SK G ++ + GH + ++ + PN II + S+D ++VW +
Sbjct: 354 --SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 411
Query: 330 VRYHLDEDPKTLKVLPIPLLDSNGA 354
+ DE+P+ +P L++N A
Sbjct: 412 ENVYNDEEPE----IPASELETNTA 432
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 19/145 (13%)
Query: 293 MQLKGHKSAVTWLCFAPN-SEQIITASKDGTLRVWNINV--RYHLDEDPKTLKVLPIPLL 349
++L+GH+ L + PN + +++AS D T+ +W+IN + H D K + ++
Sbjct: 175 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVV 234
Query: 350 DSNGATLQYDRL--SLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAP 407
+ L ++ L S++ D K++ + T K T + AH E+ C+++ P
Sbjct: 235 EDVAWHLLHESLFGSVADDQKLMIWDTRNN------NTSKPSHTVD-AHTAEVNCLSFNP 287
Query: 408 KTIPMGNQQVSVLATSSVDKKVKLW 432
+ +LAT S DK V LW
Sbjct: 288 YS-------EFILATGSADKTVALW 305
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 69/145 (47%), Gaps = 17/145 (11%)
Query: 221 IIASCSEGTDISIWHGKTGKL-LGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEI 278
I+A+ S +++W + KL L + ++++ + SP N LA++ + VW++
Sbjct: 292 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Query: 279 VYSKDGLVKAVTS--------VMQLKGHKSAVTWLCFAPNSEQII-TASKDGTLRVWNIN 329
SK G ++ + GH + ++ + PN II + S+D ++VW +
Sbjct: 352 --SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409
Query: 330 VRYHLDEDPKTLKVLPIPLLDSNGA 354
+ DE+P+ +P L++N A
Sbjct: 410 ENVYNDEEPE----IPASELETNTA 430
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 259 PNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS 318
P+G L +++ +K+W + KDG ++ L GH++ VT + +++AS
Sbjct: 149 PSGEALISSSQDMQLKIWSV---KDG-----SNPRTLIGHRATVTDIAIIDRGRNVLSAS 200
Query: 319 KDGTLRVW 326
DGT+R+W
Sbjct: 201 LDGTIRLW 208
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 278 IVYSKDGLVKAVTSVMQLK-----GHKSAVTWLCFAPNSEQIITASKDGTLRVWNI 328
I+ + +G +K + S L+ H S +T L F P+ E +I++S+D L++W++
Sbjct: 113 ILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 168
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 259 PNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS 318
P+G L +++ +K+W + KDG ++ L GH++ VT + +++AS
Sbjct: 146 PSGEALISSSQDMQLKIWSV---KDG-----SNPRTLIGHRATVTDIAIIDRGRNVLSAS 197
Query: 319 KDGTLRVW 326
DGT+R+W
Sbjct: 198 LDGTIRLW 205
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 278 IVYSKDGLVKAVTSVMQLK-----GHKSAVTWLCFAPNSEQIITASKDGTLRVWNI 328
I+ + +G +K + S L+ H S +T L F P+ E +I++S+D L++W++
Sbjct: 110 ILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 165
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Query: 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315
A+S F ++++ +++W++ + T+ + GH+S V + F+P++ QI+
Sbjct: 83 ALSQENCFAISSSWDKTLRLWDL--------RTGTTYKRFVGHQSEVYSVAFSPDNRQIL 134
Query: 316 TASKDGTLRVWNI 328
+A + +++WNI
Sbjct: 135 SAGAEREIKLWNI 147
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 67/185 (36%), Gaps = 26/185 (14%)
Query: 224 SCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIV---- 279
S S + +W +TG +Q + A SP+ R + +A ++K+W I+
Sbjct: 93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK 152
Query: 280 ---YSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNIN--VRYHL 334
K+ V+ V KSA FAP + DG L+VWN N +RY
Sbjct: 153 FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAP---YFASVGWDGRLKVWNTNFQIRYTF 209
Query: 335 DEDPKTLKVLPIP--------------LLDSNGATLQYDRLSLSSDGKILAATHGSTLQW 380
+ L I LL + L Y + + I LQW
Sbjct: 210 KAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQW 269
Query: 381 LSVET 385
++V T
Sbjct: 270 VAVGT 274
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 24/138 (17%)
Query: 298 HKSAVTWLCFAPNSEQIITASK-DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATL 356
H+ +V + + P+ + T+S D TL+VW+ N TL+ + + T+
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTN----------TLQTADVFNFEE---TV 144
Query: 357 QYDRLSLSSDGKILAA--THGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGN 414
+S S L A T G +Q +++G + H EI ++W+P+
Sbjct: 145 YSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ-GHRQEILAVSWSPR------ 197
Query: 415 QQVSVLATSSVDKKVKLW 432
+LAT+S D +VKLW
Sbjct: 198 -YDYILATASADSRVKLW 214
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 81/186 (43%), Gaps = 26/186 (13%)
Query: 251 KNNMAAISPNGRF---LAAAAFTADVKVWEIVYSKDGLV----------KAVTSVMQLKG 297
+ + A+S + R+ LA A+ + VK+W++ + L+ +AV S
Sbjct: 186 RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESAN--TA 243
Query: 298 HKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQ 357
H V LCF + ++T D +R+WN + + V + +++ L+
Sbjct: 244 HNGKVNGLCFTSDGLHLLTVGTDNRMRLWN-------SSNGENTLVNYGKVCNNSKKGLK 296
Query: 358 YDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAP--KTIPMGNQ 415
+ +S + + +GST+ +V +G+ + T K H + C + + + G++
Sbjct: 297 F-TVSCGCSSEFVFVPYGSTIAVYTVYSGEQI-TMLKGHYKTVDCCVFQSNFQELYSGSR 354
Query: 416 QVSVLA 421
++LA
Sbjct: 355 DCNILA 360
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 90 HGDSVTGLCFSSDGKCLATACADGVIRV 117
H V GLCF+SDG L T D +R+
Sbjct: 244 HNGKVNGLCFTSDGLHLLTVGTDNRMRL 271
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 11/132 (8%)
Query: 217 DGSTIIASCSEGTDISIWH--GKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVK 274
DG T+I E + +SIW T ++ + ++ AISP+ + + ++
Sbjct: 108 DGCTLIVG-GEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166
Query: 275 VWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHL 334
VW++ T V Q +GH + + + + ++ T D T+R W++ L
Sbjct: 167 VWDL--------HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL 218
Query: 335 DEDPKTLKVLPI 346
+ T ++ +
Sbjct: 219 QQHDFTSQIFSL 230
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 13/124 (10%)
Query: 206 LFGASATYGTAD-GSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFL 264
L G A D I S S I +W+ T + + + N K +A + R +
Sbjct: 252 LVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL--NGHKRGIACLQYRDRLV 309
Query: 265 AAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLR 324
+ + +++W+I + + L+GH+ V C ++++I++ + DG ++
Sbjct: 310 VSGSSDNTIRLWDI--------ECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDGKIK 359
Query: 325 VWNI 328
VW++
Sbjct: 360 VWDL 363
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVY 280
++ S S I +W + G L ++ ++ + I + + + + A+ +KVW++V
Sbjct: 308 LVVSGSSDNTIRLWDIECGACLRVLEGHE--ELVRCIRFDNKRIVSGAYDGKIKVWDLVA 365
Query: 281 SKDGLVKAVTSVMQ-LKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNI 328
+ D A T ++ L H V L F + QI+++S D T+ +W+
Sbjct: 366 ALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDF 412
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 295 LKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNIN 329
L GH +V LC + IIT S D T+RVW++N
Sbjct: 169 LTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVN 201
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 13/110 (11%)
Query: 221 IIASCSEGTDISIWH--GKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278
++ +CS+ I++W T L V + + + + +++ +A+ +KVW
Sbjct: 225 MMVTCSKDRSIAVWDMASPTDITLRRVLVGH-RAAVNVVDFDDKYIVSASGDRTIKVWN- 282
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNI 328
V L GHK + C +++ S D T+R+W+I
Sbjct: 283 -------TSTCEFVRTLNGHKRGIA--CLQYRDRLVVSGSSDNTIRLWDI 323
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 19/88 (21%)
Query: 306 CFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGAT--LQYDRLSL 363
C + ++I++ +D T+++W D TL+ I L G+ LQYD
Sbjct: 138 CLQYDDQKIVSGLRDNTIKIW----------DKNTLECKRI-LTGHTGSVLCLQYD---- 182
Query: 364 SSDGKILAATHGSTLQWLSVETGKVLDT 391
+ I+ + ST++ V TG++L+T
Sbjct: 183 --ERVIITGSSDSTVRVWDVNTGEMLNT 208
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 80/186 (43%), Gaps = 42/186 (22%)
Query: 251 KNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTW----LC 306
+ N+ ++S + + ++ KVW K + V L+ H ++V W +
Sbjct: 104 QGNVCSLSFQDGVVISGSWDKTAKVW----------KEGSLVYNLQAHNASV-WDAKVVS 152
Query: 307 FAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD 366
F+ N + +TAS D T+++W ++ K +K D L++ D
Sbjct: 153 FSEN--KFLTASADKTIKLW---------QNDKVIKTFSGIHNDV------VRHLAVVDD 195
Query: 367 GKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD 426
G ++ ++ ++ + TG VL T E HE + C+ K +P G+ + + D
Sbjct: 196 GHFISCSNDGLIKLVDXHTGDVLRTYE-GHESFVYCI----KLLPNGD-----IVSCGED 245
Query: 427 KKVKLW 432
+ V++W
Sbjct: 246 RTVRIW 251
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 19/145 (13%)
Query: 293 MQLKGHKSAVTWLCFAPN-SEQIITASKDGTLRVWNINVRYHLDE--DPKTLKVLPIPLL 349
++L+GH+ L + PN S +++AS D T+ +W+I+ + D KT+ ++
Sbjct: 171 LRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVV 230
Query: 350 DSNGATLQYDRL--SLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAP 407
+ L ++ L S++ D K++ S T K + + AH E+ C+++ P
Sbjct: 231 EDVSWHLLHESLFGSVADDQKLMIWDTRSN------NTSKPSHSVD-AHTAEVNCLSFNP 283
Query: 408 KTIPMGNQQVSVLATSSVDKKVKLW 432
+ +LAT S DK V LW
Sbjct: 284 YS-------EFILATGSADKTVALW 301
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 62/130 (47%), Gaps = 13/130 (10%)
Query: 221 IIASCSEGTDISIWHGKTGKL-LGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEI 278
I+A+ S +++W + KL L + ++++ + SP N LA++ + VW++
Sbjct: 288 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Query: 279 VYSKDGLVKAVTS--------VMQLKGHKSAVTWLCFAPNSEQII-TASKDGTLRVWNIN 329
SK G ++ + GH + ++ + PN +I + S+D ++VW +
Sbjct: 348 --SKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMA 405
Query: 330 VRYHLDEDPK 339
+ DEDP+
Sbjct: 406 ENIYNDEDPE 415
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 13/112 (11%)
Query: 219 STIIASCSEGTD--ISIWHGKTGKLLGNVDTNQLKNNMAAI--SPNGRFLAAAAFTADVK 274
S ++A+ +D I IW+ +G L VD + + + +I SP+ + L + A +
Sbjct: 300 SNVLATGGGTSDRHIRIWNVCSGACLSAVDAH---SQVCSILWSPHYKELISGHGFAQNQ 356
Query: 275 VWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVW 326
+ +++ + K V +LKGH S V L +P+ + +A+ D TLR+W
Sbjct: 357 L--VIWKYPTMAK----VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 89/210 (42%), Gaps = 38/210 (18%)
Query: 231 ISIWHGKTGKLLGNVDTNQLKNNMAAIS--PNGRFLAAAAFTADVKVWEIVYSKDGLVKA 288
+ +W +G +L + Q +++++ G +LA +A+V++W++ K
Sbjct: 138 VYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK------ 191
Query: 289 VTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPL 348
+ + H + V L + NS + + S+ G + +H D ++V +
Sbjct: 192 --RLRNMTSHSARVGSLSW--NSYILSSGSRSGHI--------HHHD-----VRVAEHHV 234
Query: 349 LDSNGATLQYDRLSLSSDGKILAATHGSTL--QWLSV--ETGKVLDTAEKAHEGEITCMA 404
+G + + L + DG+ LA+ L W S E G V H+G + +A
Sbjct: 235 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 294
Query: 405 WAPKTIPMGNQQVSVLAT--SSVDKKVKLW 432
W P Q +VLAT + D+ +++W
Sbjct: 295 WCP-------WQSNVLATGGGTSDRHIRIW 317
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 258 SPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA 317
+P+GR LA+ V VW + G V + + Q +G AV W + N
Sbjct: 250 APDGRHLASGGNDNLVNVWPSAPGEGGWVP-LQTFTQHQGAVKAVAWCPWQSNVLATGGG 308
Query: 318 SKDGTLRVWNI 328
+ D +R+WN+
Sbjct: 309 TSDRHIRIWNV 319
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 79 HHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
HH V TL GH V GL ++ DG+ LA+ D ++ V
Sbjct: 232 HH---VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 267
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHK---LDDASSK 126
V LKGH V L S DG +A+A AD +R+ + LD A +
Sbjct: 368 VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRR 413
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 13/112 (11%)
Query: 219 STIIASCSEGTD--ISIWHGKTGKLLGNVDTNQLKNNMAAI--SPNGRFLAAAAFTADVK 274
S ++A+ +D I IW+ +G L VD + + + +I SP+ + L + A +
Sbjct: 289 SNVLATGGGTSDRHIRIWNVCSGACLSAVDAH---SQVCSILWSPHYKELISGHGFAQNQ 345
Query: 275 VWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVW 326
+ +++ + K V +LKGH S V L +P+ + +A+ D TLR+W
Sbjct: 346 L--VIWKYPTMAK----VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 89/210 (42%), Gaps = 38/210 (18%)
Query: 231 ISIWHGKTGKLLGNVDTNQLKNNMAAIS--PNGRFLAAAAFTADVKVWEIVYSKDGLVKA 288
+ +W +G +L + Q +++++ G +LA +A+V++W++ K
Sbjct: 127 VYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK------ 180
Query: 289 VTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPL 348
+ + H + V L + NS + + S+ G + +H D ++V +
Sbjct: 181 --RLRNMTSHSARVGSLSW--NSYILSSGSRSGHI--------HHHD-----VRVAEHHV 223
Query: 349 LDSNGATLQYDRLSLSSDGKILAATHGSTL--QWLSV--ETGKVLDTAEKAHEGEITCMA 404
+G + + L + DG+ LA+ L W S E G V H+G + +A
Sbjct: 224 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 283
Query: 405 WAPKTIPMGNQQVSVLAT--SSVDKKVKLW 432
W P Q +VLAT + D+ +++W
Sbjct: 284 WCP-------WQSNVLATGGGTSDRHIRIW 306
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 258 SPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA 317
+P+GR LA+ V VW + G V + + Q +G AV W + N
Sbjct: 239 APDGRHLASGGNDNLVNVWPSAPGEGGWVP-LQTFTQHQGAVKAVAWCPWQSNVLATGGG 297
Query: 318 SKDGTLRVWNI 328
+ D +R+WN+
Sbjct: 298 TSDRHIRIWNV 308
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 79 HHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
HH V TL GH V GL ++ DG+ LA+ D ++ V
Sbjct: 221 HH---VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 256
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHK---LDDASSK 126
V LKGH V L S DG +A+A AD +R+ + LD A +
Sbjct: 357 VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRR 402
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 13/112 (11%)
Query: 219 STIIASCSEGTD--ISIWHGKTGKLLGNVDTNQLKNNMAAI--SPNGRFLAAAAFTADVK 274
S ++A+ +D I IW+ +G L VD + + + +I SP+ + L + A +
Sbjct: 209 SNVLATGGGTSDRHIRIWNVCSGACLSAVDAH---SQVCSILWSPHYKELISGHGFAQNQ 265
Query: 275 VWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVW 326
+ +++ + K V +LKGH S V L +P+ + +A+ D TLR+W
Sbjct: 266 L--VIWKYPTMAK----VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 89/210 (42%), Gaps = 38/210 (18%)
Query: 231 ISIWHGKTGKLLGNVDTNQLKNNMAAIS--PNGRFLAAAAFTADVKVWEIVYSKDGLVKA 288
+ +W +G +L + Q +++++ G +LA +A+V++W++ K
Sbjct: 47 VYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK------ 100
Query: 289 VTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPL 348
+ + H + V L + NS + + S+ G + +H D ++V +
Sbjct: 101 --RLRNMTSHSARVGSLSW--NSYILSSGSRSGHI--------HHHD-----VRVAEHHV 143
Query: 349 LDSNGATLQYDRLSLSSDGKILAATHGSTL--QWLSV--ETGKVLDTAEKAHEGEITCMA 404
+G + + L + DG+ LA+ L W S E G V H+G + +A
Sbjct: 144 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 203
Query: 405 WAPKTIPMGNQQVSVLAT--SSVDKKVKLW 432
W P Q +VLAT + D+ +++W
Sbjct: 204 WCP-------WQSNVLATGGGTSDRHIRIW 226
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 258 SPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA 317
+P+GR LA+ V VW + G V + + Q +G AV W + N
Sbjct: 159 APDGRHLASGGNDNLVNVWPSAPGEGGWVP-LQTFTQHQGAVKAVAWCPWQSNVLATGGG 217
Query: 318 SKDGTLRVWNI 328
+ D +R+WN+
Sbjct: 218 TSDRHIRIWNV 228
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 71 GDKDQNKRHHPL-----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRV 117
G + + HH + V TL GH V GL ++ DG+ LA+ D ++ V
Sbjct: 125 GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 176
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHK 119
V LKGH V L S DG +A+A AD +R+ +
Sbjct: 277 VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 257 ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT 316
S +GR L A + VW+++ + V L GH++ V+ L +P+ +
Sbjct: 292 FSLSGRLLFAGYNDYTINVWDVLKG--------SRVSILFGHENRVSTLRVSPDGTAFCS 343
Query: 317 ASKDGTLRVW 326
S D TLRVW
Sbjct: 344 GSWDHTLRVW 353
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 84/213 (39%), Gaps = 43/213 (20%)
Query: 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ-LKGHKSAVTWLCFAPNSEQI 314
A S G+ A DV++ ++ + L + V + LKGH + V + + + +I
Sbjct: 20 AESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRI 79
Query: 315 ITASKDGTLRVWN--INVRYHLDEDPKTL--------------------KVLPIPL-LDS 351
+++S+DG + VW+ + H P T K PL D
Sbjct: 80 VSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDK 139
Query: 352 N--------GATLQYDRLS----LSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGE 399
N + + LS +SD +IL A+ T VE+G++L + H +
Sbjct: 140 NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH-GHGAD 198
Query: 400 ITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
+ C+ AP GN VS DKK +W
Sbjct: 199 VLCLDLAPS--ETGNTFVS----GGCDKKAMVW 225
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 255 AAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQI 314
A +P+G +A V+ + + K+ + A + + H + ++ F + QI
Sbjct: 112 CAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAM--HTNYLSACSFTNSDMQI 169
Query: 315 ITASKDGTLRVWNI 328
+TAS DGT +W++
Sbjct: 170 LTASGDGTCALWDV 183
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 13/80 (16%)
Query: 254 MAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVT------WLCF 307
A S R+LA F ++ +W L V +KGHK + L
Sbjct: 73 FGATSLQQRYLATGDFGGNLHIWN-------LEAPEMPVYSVKGHKEIINAIDGIGGLGI 125
Query: 308 APNSEQIITASKDGTLRVWN 327
+ +I+T S+DGT++VW+
Sbjct: 126 GEGAPEIVTGSRDGTVKVWD 145
>pdb|2D3P|A Chain A, Cratylia Floribunda Seed Lectin Crystallized At Basic Ph
pdb|2D3P|B Chain B, Cratylia Floribunda Seed Lectin Crystallized At Basic Ph
pdb|2D3P|C Chain C, Cratylia Floribunda Seed Lectin Crystallized At Basic Ph
pdb|2D3P|D Chain D, Cratylia Floribunda Seed Lectin Crystallized At Basic Ph
pdb|2D3R|A Chain A, Cratylia Folibunda Seed Lectin At Acidic Ph
pdb|2D3R|B Chain B, Cratylia Folibunda Seed Lectin At Acidic Ph
pdb|2D3R|C Chain C, Cratylia Folibunda Seed Lectin At Acidic Ph
pdb|2D3R|D Chain D, Cratylia Folibunda Seed Lectin At Acidic Ph
Length = 236
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 169 GEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATY-------GTADGSTI 221
G + + G QS G + + V DK A++ F A+ T+ ADG
Sbjct: 152 GNLQLTRVSNGSPQSNSVGRALYYAPVHVWDKSAVVASFDATFTFLIKSTDSDIADG--- 208
Query: 222 IASCSEGTDISIWHGKTGKLLG 243
IA TD SI HG G+LLG
Sbjct: 209 IAFFIANTDSSIPHGSGGRLLG 230
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVR 331
+Y K G V +LK H VT + +AP+S +I+T D VW + R
Sbjct: 34 IYEKSG--NKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGR 84
>pdb|3U4X|A Chain A, Crystal Structure Of A Lectin From Camptosema Pedicellatum
Seeds In Complex With
5-Bromo-4-Chloro-3-Indolyl-Alpha-D-Mannose
Length = 236
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 169 GEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATY-------GTADGSTI 221
G + + G QS G + + V DK A++ F A+ T+ ADG
Sbjct: 152 GNLQLTRVSNGSPQSNSVGRALYYAPVHVWDKSAVVASFDATFTFLIKSPDSDPADG--- 208
Query: 222 IASCSEGTDISIWHGKTGKLLG 243
IA TD SI HG G+LLG
Sbjct: 209 IAFFIANTDSSIPHGSGGRLLG 230
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 32/158 (20%)
Query: 290 TSVMQLKGHKSAVTWLCFAPNSE-QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPL 348
TS L G A+ + F P+ +II+ S D T+ ++ E P P
Sbjct: 138 TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIF---------EGP------PFKF 182
Query: 349 LDSNGATLQY-DRLSLSSDGKILAATHGSTLQWL-----SVETGKVLDTAEK--AHEGEI 400
+ G ++ + + DG + A+T G L +TG D + K AH G +
Sbjct: 183 KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV 242
Query: 401 TCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438
+ W+P + +A++S DK +K+W +L+
Sbjct: 243 FGLTWSPDG--------TKIASASADKTIKIWNVATLK 272
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 82/206 (39%), Gaps = 61/206 (29%)
Query: 172 KAISTNEGKQQSKLPGPEIKW-----EHHK-VHDKRAILTLFGASATYGTADGSTIIASC 225
+ IS ++ + GP K+ EH K VH R DGS ++
Sbjct: 162 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY------------NPDGSLFASTG 209
Query: 226 SEGTDISIWHGKTGKLLGNVDTNQLKNNMAA-------ISPNGRFLAAAAFTADVKVWE- 277
+GT I +++G G G + + LKN + SP+G +A+A+ +K+W
Sbjct: 210 GDGT-IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV 268
Query: 278 ---------------------IVYSKDGLVK------------AVTSVMQLK-GHKSAVT 303
I+++K LV + S+ Q++ GH A+T
Sbjct: 269 ATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAIT 328
Query: 304 WLCFAPNSEQIITASKDGTLRVWNIN 329
L + + + + +A +G + W+I+
Sbjct: 329 ALSSSADGKTLFSADAEGHINSWDIS 354
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVR 331
+Y K G V +LK H VT + +AP+S +I+T D VW + R
Sbjct: 34 IYEKSG--NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 84
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 90/210 (42%), Gaps = 35/210 (16%)
Query: 238 TGKLLGNVDTNQLKN-NMAAISP-NGRFLAAAAFTADVKVWEIVY--SKDGLVKAVTSVM 293
TGK+ + N N A P N +A ++DV V++ +K +
Sbjct: 114 TGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDL 173
Query: 294 QLKGHKSAVTWLCFAPN-SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPI------ 346
+L+GH+ L + N S +++AS D T+ +W+IN PK K++
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINA------GPKEGKIVDAKAIFTG 227
Query: 347 --PLLDSNGATLQYDRL--SLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITC 402
+++ L ++ L S++ D K++ S + + ++D AH E+ C
Sbjct: 228 HSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNT---TSKPSHLVD----AHTAEVNC 280
Query: 403 MAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
+++ P + +LAT S DK V LW
Sbjct: 281 LSFNPYS-------EFILATGSADKTVALW 303
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 290 TSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVW 326
T +L GH ++ L F ++ +++AS DGTLR+W
Sbjct: 238 TPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 257 ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT 316
++ +G + +A++ +++W++ + + + GHKS V + + II+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGE--------TYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 317 ASKDGTLRVWNI 328
S+D T++VW I
Sbjct: 125 GSRDKTIKVWTI 136
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 297 GHKSAVTWLCFAPNSEQIITASKDGTLRVWNI 328
GH S + L +P+ I +A KDG + +WN+
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 10/120 (8%)
Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVW 276
D S I S + W+ ++ + + N SP+G +A+A ++ +W
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 277 EIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDE 336
+ K M + V L F+PN + A+ G ++V++++ +Y +D+
Sbjct: 224 NLAAKK---------AMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDD 273
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 257 ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT 316
++ +G + +A++ +++W++ + + + GHKS V + + II+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGE--------TYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 317 ASKDGTLRVWNI 328
S+D T++VW I
Sbjct: 125 GSRDKTIKVWTI 136
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 297 GHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVR 331
GH S + L +P+ I +A KDG + +WN+ +
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 10/120 (8%)
Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVW 276
D S I S + W+ ++ + + N SP+G +A+A ++ +W
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 277 EIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDE 336
+ K M + V L F+PN + A+ G ++V++++ +Y +D+
Sbjct: 224 NLAAKK---------AMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDD 273
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 257 ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT 316
++ +G + +A++ +++W++ + + + GHKS V + + II+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGE--------TYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 317 ASKDGTLRVWNI 328
S+D T++VW I
Sbjct: 125 GSRDKTIKVWTI 136
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 297 GHKSAVTWLCFAPNSEQIITASKDGTLRVWNI 328
GH S + L +P+ I +A KDG + +WN+
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 10/120 (8%)
Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVW 276
D S I S + W+ ++ + + N SP+G +A+A ++ +W
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 277 EIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDE 336
+ K M + V L F+PN + A+ G ++V++++ +Y +D+
Sbjct: 224 NLAAKK---------AMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDD 273
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 257 ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT 316
++ +G + +A++ +++W++ + + + GHKS V + + II+
Sbjct: 67 LTADGAYALSASWDKTLRLWDVATGE--------TYQRFVGHKSDVMSVDIDKKASMIIS 118
Query: 317 ASKDGTLRVWNI 328
S+D T++VW I
Sbjct: 119 GSRDKTIKVWTI 130
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 297 GHKSAVTWLCFAPNSEQIITASKDGTLRVWNI 328
GH S + L +P+ I +A KDG + +WN+
Sbjct: 188 GHNSNINTLTASPDGTLIASAGKDGEIMLWNL 219
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 10/120 (8%)
Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVW 276
D S I S + W+ ++ + + N SP+G +A+A ++ +W
Sbjct: 158 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 217
Query: 277 EIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDE 336
+ K M + V L F+PN + A+ G ++V++++ +Y +D+
Sbjct: 218 NLAAKK---------AMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDD 267
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 257 ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT 316
++ +G + +A++ +++W++ + + + GHKS V + + II+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGE--------TYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 317 ASKDGTLRVWNI 328
S+D T++VW I
Sbjct: 125 GSRDKTIKVWTI 136
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 297 GHKSAVTWLCFAPNSEQIITASKDGTLRVWNI 328
GH S + L +P+ I +A KDG + +WN+
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 10/120 (8%)
Query: 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVW 276
D S I S + W+ ++ + + N SP+G +A+A ++ +W
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 277 EIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDE 336
+ K M + V L F+PN + A+ G ++V++++ +Y +D+
Sbjct: 224 NLAAKK---------AMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDD 273
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 92/211 (43%), Gaps = 37/211 (17%)
Query: 238 TGKLLGNVDTNQLKN-NMAAISP-NGRFLAAAAFTADVKVWEIVY--SKDGLVKAVTSVM 293
TGK+ + N N A P N +A ++DV V++ +K +
Sbjct: 114 TGKIECEIKINHEGEVNRARYXPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDL 173
Query: 294 QLKGHKSAVTWLCFAPN-SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPI------ 346
+L+GH+ L + N S +++AS D T+ +W+IN PK K++
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAG------PKEGKIVDAKAIFTG 227
Query: 347 --PLLDSNGATLQYDRL--SLSSDGKI-LAATHGSTLQWLSVETGKVLDTAEKAHEGEIT 401
+++ L ++ L S++ D K+ + T +T + + ++D AH E+
Sbjct: 228 HSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNT----TSKPSHLVD----AHTAEVN 279
Query: 402 CMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432
C+++ P + +LAT S DK V LW
Sbjct: 280 CLSFNPYS-------EFILATGSADKTVALW 303
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 257 ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT 316
++ +G + +A++ +++W++ + + + GHKS V + + II+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGE--------TYQRFVGHKSDVXSVDIDKKASXIIS 124
Query: 317 ASKDGTLRVWNI 328
S+D T++VW I
Sbjct: 125 GSRDKTIKVWTI 136
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 297 GHKSAVTWLCFAPNSEQIITASKDGTLRVWNI 328
GH S + L +P+ I +A KDG + +WN+
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIXLWNL 225
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 250 LKNNMAAI---SPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLC 306
L+ +MA++ S +G + + ++ + VW++ K + L GH +
Sbjct: 266 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK--------CLYILSGHTDRIYSTI 317
Query: 307 FAPNSEQIITASKDGTLRVWNI 328
+ ++ I+AS D T+R+W++
Sbjct: 318 YDHERKRCISASMDTTIRIWDL 339
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 260 NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP--NSEQIITA 317
+G L + + V+VW+I K G V +GH S V L N + I+T
Sbjct: 172 HGGILVSGSTDRTVRVWDI---KKGCCTHV-----FEGHNSTVRCLDIVEYKNIKYIVTG 223
Query: 318 SKDGTLRVWNI 328
S+D TL VW +
Sbjct: 224 SRDNTLHVWKL 234
>pdb|1MVQ|A Chain A, Cratylia Mollis Lectin (Isoform 1) In Complex With
Methyl-Alpha-D- Mannose
Length = 236
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 169 GEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATY-------GTADGSTI 221
G + + G QS G + + + DK A++ F A+ T+ ADG
Sbjct: 152 GNLQLTRVSNGSPQSDSVGRALYYAPVHIWDKSAVVASFDATFTFLIKSPDREIADG--- 208
Query: 222 IASCSEGTDISIWHGKTGKLLG 243
IA TD SI HG G+LLG
Sbjct: 209 IAFFIANTDSSIPHGSGGRLLG 230
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 260 NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP--NSEQIITA 317
+G L + + V+VW+I K G V +GH S V L N + I+T
Sbjct: 172 HGGILVSGSTDRTVRVWDI---KKGCCTHV-----FEGHNSTVRCLDIVEYKNIKYIVTG 223
Query: 318 SKDGTLRVWNI 328
S+D TL VW +
Sbjct: 224 SRDNTLHVWKL 234
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/75 (20%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 254 MAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQ 313
+ +S +G + + ++ + VW++ K + L GH + + ++
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQXK--------CLYILSGHTDRIYSTIYDHERKR 324
Query: 314 IITASKDGTLRVWNI 328
I+AS D T+R+W++
Sbjct: 325 CISASXDTTIRIWDL 339
>pdb|3V7N|A Chain A, Crystal Structure Of Threonine Synthase (Thrc) From From
Burkholderia Thailandensis
Length = 487
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 345 PIPLLD-SNGATLQYDRLSLSSDGKILAAT---HGSTLQWLSVETGKVLDTAEKAHEGE 399
P+ LL+ SNG TL + +++ G + T HG TL L +G AE A G+
Sbjct: 115 PVSLLELSNGPTLAFKDMAMQLLGNLFEYTLAKHGETLNILGATSGDTGSAAEYAMRGK 173
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 239 GKLLGNVDTNQLKN-NMAAISPNGR-FLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK 296
GKL+ + N+ + +A+SP +L + +K+W + K+ +V V S
Sbjct: 52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNL---KEIIVGEVYSSSLTY 108
Query: 297 GHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLK 342
S VT + PN + +SKDG + V +N Y + + K L
Sbjct: 109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVN-HYQQESEVKFLN 153
>pdb|2Q9U|A Chain A, Crystal Structure Of The Flavodiiron Protein From Giardia
Intestinalis
pdb|2Q9U|B Chain B, Crystal Structure Of The Flavodiiron Protein From Giardia
Intestinalis
Length = 414
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 328 INVRYHLDEDPKTLKVLPIPLLDSNGATLQY---DRLSLSSDGKILAATHGSTLQW 380
++ +Y L +TLK +P+PLL +T Y D++ S+DG + ++ +W
Sbjct: 130 VDDKYTLKIGKRTLKFIPVPLLHWPDSTFTYCPEDKILFSNDG--FGQHYATSRRW 183
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 66/145 (45%), Gaps = 19/145 (13%)
Query: 292 VMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDS 351
V+ HK A+ + + P++ + S D T+ +W + +T ++ + +++
Sbjct: 51 VLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKE-----ESADRTFEMDLLAIIE- 104
Query: 352 NGATLQYDRLSLSSDGKILA--ATHGSTLQWLSVETGKVLD--TAEKAHEGEITCMAWAP 407
G + ++ S+DG LA + S W + E+G+ + + + H ++ + W P
Sbjct: 105 -GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP 163
Query: 408 KTIPMGNQQVSVLATSSVDKKVKLW 432
++LA+SS D V++W
Sbjct: 164 SE--------ALLASSSYDDTVRIW 180
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315
A P+ LAA +F + V +W S D + + + ++GH++ V + ++ + +
Sbjct: 65 AWRPHTSLLAAGSFDSTVSIWAKEESADRTFE-MDLLAIIEGHENEVKGVAWSNDGYYLA 123
Query: 316 TASKDGTLRVWNIN 329
T S+D ++ +W +
Sbjct: 124 TCSRDKSVWIWETD 137
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 87 LKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSK 126
++GH + V G+ +S+DG LAT D + + + D++ +
Sbjct: 103 IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE 142
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 8/48 (16%)
Query: 386 GKVLDTAEKAHEGEITCMAWAPKTIPM-GNQQVSVLATSSVDKKVKLW 432
G++L + HEG + +AWA PM GN +LA+ S D+KV +W
Sbjct: 46 GQILIADLRGHEGPVWQVAWAH---PMYGN----ILASCSYDRKVIIW 86
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 27/143 (18%)
Query: 295 LKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGA 354
++G A++WL +S++ T D T+RVW++ T K + LD
Sbjct: 252 VQGGIFALSWL----DSQKFATVGADATIRVWDVT----------TSKCVQKWTLDKQQL 297
Query: 355 TLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGN 414
Q + + +G+I++ + TL + + +VL T ++G IT + P
Sbjct: 298 GNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKG-ITALTVNP------- 349
Query: 415 QQVSVLATSSVDKKVKLWLAPSL 437
L + S D ++ W + S+
Sbjct: 350 -----LISGSYDGRIMEWSSSSM 367
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 297 GHKSAVTWLCFAPNSEQII-TASKDGTLRVWNI 328
GH +A+ L F P ++ + SKD LR+WNI
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 181
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 297 GHKSAVTWLCFAPNSEQII-TASKDGTLRVWNI 328
GH +A+ L F P ++ + SKD LR+WNI
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 145
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 297 GHKSAVTWLCFAPNSEQII-TASKDGTLRVWNI 328
GH +A+ L F P ++ + SKD LR+WNI
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 144
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 297 GHKSAVTWLCFAPNSEQII-TASKDGTLRVWNI 328
GH +A+ L F P ++ + SKD LR+WNI
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 140
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 297 GHKSAVTWLCFAPNSEQII-TASKDGTLRVWNI 328
GH +A+ L F P ++ + SKD LR+WNI
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 144
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 27/138 (19%)
Query: 295 LKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGA 354
++G A++WL +S++ T D T+RVW++ T K + LD
Sbjct: 252 VQGGIFALSWL----DSQKFATVGADATIRVWDVT----------TSKCVQKWTLDKQQL 297
Query: 355 TLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGN 414
Q + + +G+I++ + TL + + +VL T ++G IT + P
Sbjct: 298 GNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKG-ITALTVNP------- 349
Query: 415 QQVSVLATSSVDKKVKLW 432
L + S D ++ W
Sbjct: 350 -----LISGSYDGRIXEW 362
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,162,213
Number of Sequences: 62578
Number of extensions: 523572
Number of successful extensions: 2077
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1389
Number of HSP's gapped (non-prelim): 482
length of query: 440
length of database: 14,973,337
effective HSP length: 102
effective length of query: 338
effective length of database: 8,590,381
effective search space: 2903548778
effective search space used: 2903548778
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)