Query 013578
Match_columns 440
No_of_seqs 653 out of 3775
Neff 11.9
Searched_HMMs 46136
Date Fri Mar 29 05:16:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013578.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013578hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2096 WD40 repeat protein [G 100.0 4.3E-51 9.3E-56 321.3 34.7 397 1-433 1-400 (420)
2 KOG0271 Notchless-like WD40 re 100.0 2.2E-49 4.8E-54 318.9 25.3 301 81-438 105-442 (480)
3 KOG0271 Notchless-like WD40 re 100.0 9.9E-48 2.2E-52 309.4 22.2 314 58-433 120-479 (480)
4 KOG0286 G-protein beta subunit 100.0 1.2E-45 2.5E-50 287.3 26.0 293 84-433 48-343 (343)
5 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-45 3.4E-50 300.4 23.2 283 88-433 172-458 (459)
6 KOG0279 G protein beta subunit 100.0 2.7E-40 5.9E-45 255.8 26.9 253 84-439 8-266 (315)
7 KOG0279 G protein beta subunit 100.0 3.3E-40 7.1E-45 255.3 24.1 251 80-436 52-314 (315)
8 KOG0645 WD40 repeat protein [G 100.0 2.1E-38 4.6E-43 244.3 32.1 295 83-435 6-311 (312)
9 KOG0265 U5 snRNP-specific prot 100.0 8.9E-40 1.9E-44 255.5 24.5 299 82-434 38-337 (338)
10 KOG0263 Transcription initiati 100.0 3.9E-40 8.5E-45 289.6 22.5 258 80-437 367-651 (707)
11 KOG0272 U4/U6 small nuclear ri 100.0 2.5E-40 5.3E-45 270.1 18.5 262 67-382 189-458 (459)
12 KOG0295 WD40 repeat-containing 100.0 1.1E-39 2.4E-44 261.4 21.1 292 81-434 98-405 (406)
13 KOG0315 G-protein beta subunit 100.0 3.5E-38 7.5E-43 240.2 25.2 278 104-438 11-291 (311)
14 KOG0285 Pleiotropic regulator 100.0 1.3E-38 2.8E-43 254.9 22.1 251 82-438 142-392 (460)
15 KOG0284 Polyadenylation factor 100.0 3.5E-39 7.5E-44 262.3 17.8 284 91-436 96-381 (464)
16 KOG0273 Beta-transducin family 100.0 1.1E-37 2.4E-42 258.1 25.9 278 92-435 236-523 (524)
17 KOG0293 WD40 repeat-containing 100.0 1.2E-37 2.5E-42 253.9 24.8 302 77-436 210-514 (519)
18 KOG0282 mRNA splicing factor [ 100.0 2.7E-38 5.9E-43 262.6 17.9 296 83-433 206-503 (503)
19 KOG0318 WD40 repeat stress pro 100.0 2.3E-35 5E-40 247.7 32.1 329 62-438 157-563 (603)
20 KOG0291 WD40-repeat-containing 100.0 1.1E-35 2.3E-40 260.0 30.3 319 83-437 137-510 (893)
21 KOG0273 Beta-transducin family 100.0 2.6E-36 5.7E-41 250.0 24.4 299 79-438 167-485 (524)
22 KOG0316 Conserved WD40 repeat- 100.0 6.3E-36 1.4E-40 226.1 23.4 248 83-437 9-259 (307)
23 KOG0296 Angio-associated migra 100.0 7.5E-36 1.6E-40 239.6 24.9 299 81-436 54-399 (399)
24 KOG0263 Transcription initiati 100.0 2.1E-36 4.6E-41 266.2 22.6 209 83-387 443-652 (707)
25 KOG0772 Uncharacterized conser 100.0 1.3E-35 2.7E-40 248.7 26.0 314 83-435 159-487 (641)
26 cd00200 WD40 WD40 domain, foun 100.0 7.8E-35 1.7E-39 252.2 32.2 287 84-433 2-289 (289)
27 KOG0318 WD40 repeat stress pro 100.0 1.1E-34 2.5E-39 243.5 30.5 299 84-439 52-354 (603)
28 KOG0315 G-protein beta subunit 100.0 2.6E-35 5.7E-40 224.5 23.4 293 66-406 11-309 (311)
29 KOG0319 WD40-repeat-containing 100.0 4.1E-36 8.9E-41 262.0 20.4 343 66-439 118-581 (775)
30 KOG0266 WD40 repeat-containing 100.0 1.5E-34 3.2E-39 261.3 29.5 263 76-438 144-412 (456)
31 KOG0266 WD40 repeat-containing 100.0 3E-34 6.4E-39 259.3 28.4 269 68-435 174-454 (456)
32 KOG0319 WD40-repeat-containing 100.0 4.2E-35 9E-40 255.8 21.8 252 85-436 359-620 (775)
33 KOG0291 WD40-repeat-containing 100.0 6.9E-34 1.5E-38 248.8 29.0 305 84-436 343-710 (893)
34 KOG0276 Vesicle coat complex C 100.0 2.7E-34 5.8E-39 246.2 24.2 249 85-437 7-259 (794)
35 KOG0281 Beta-TrCP (transducin 100.0 2E-35 4.4E-40 235.9 13.7 251 74-438 177-431 (499)
36 KOG0281 Beta-TrCP (transducin 100.0 8.4E-35 1.8E-39 232.4 16.7 254 69-439 211-481 (499)
37 KOG0283 WD40 repeat-containing 100.0 7E-34 1.5E-38 252.5 23.9 306 85-437 260-578 (712)
38 PLN00181 protein SPA1-RELATED; 100.0 1.8E-32 4E-37 266.3 35.3 297 86-434 478-792 (793)
39 KOG0292 Vesicle coat complex C 100.0 1.2E-33 2.5E-38 251.5 22.3 262 86-438 4-283 (1202)
40 KOG0285 Pleiotropic regulator 100.0 2E-33 4.3E-38 225.3 20.6 267 65-436 163-440 (460)
41 KOG1407 WD40 repeat protein [F 100.0 9.4E-33 2E-37 212.1 23.3 288 85-436 14-312 (313)
42 KOG0278 Serine/threonine kinas 100.0 7.8E-34 1.7E-38 216.7 16.8 288 86-439 9-301 (334)
43 KOG0275 Conserved WD40 repeat- 100.0 9E-35 2E-39 230.3 11.4 259 89-433 211-507 (508)
44 KOG0295 WD40 repeat-containing 100.0 2E-33 4.4E-38 225.6 17.7 266 64-383 119-405 (406)
45 KOG0277 Peroxisomal targeting 100.0 7.8E-33 1.7E-37 211.7 19.5 244 91-434 60-308 (311)
46 KOG0640 mRNA cleavage stimulat 100.0 1.3E-32 2.9E-37 216.5 20.7 304 82-435 103-426 (430)
47 KOG0643 Translation initiation 100.0 1.2E-31 2.6E-36 206.7 24.6 288 86-436 5-318 (327)
48 KOG0284 Polyadenylation factor 100.0 1.2E-33 2.6E-38 230.2 14.1 261 69-384 112-380 (464)
49 KOG0286 G-protein beta subunit 100.0 2.8E-31 6.1E-36 207.3 24.0 247 131-438 48-306 (343)
50 KOG0292 Vesicle coat complex C 100.0 7.9E-32 1.7E-36 240.0 23.6 281 62-438 18-324 (1202)
51 KOG0313 Microtubule binding pr 100.0 2.9E-31 6.2E-36 214.5 23.9 286 89-436 103-419 (423)
52 KOG0268 Sof1-like rRNA process 100.0 2.9E-32 6.3E-37 218.9 17.1 285 84-436 59-346 (433)
53 KOG0306 WD40-repeat-containing 100.0 1.1E-30 2.4E-35 228.8 27.6 285 85-436 367-665 (888)
54 KOG0645 WD40 repeat protein [G 100.0 1.5E-30 3.2E-35 201.1 24.4 270 67-384 29-311 (312)
55 KOG0306 WD40-repeat-containing 100.0 7.1E-31 1.5E-35 229.9 25.5 197 221-439 387-584 (888)
56 PTZ00421 coronin; Provisional 100.0 2.4E-30 5.2E-35 232.7 27.2 236 86-409 70-315 (493)
57 KOG0288 WD40 repeat protein Ti 100.0 1E-31 2.2E-36 219.3 15.1 294 80-433 164-459 (459)
58 KOG0305 Anaphase promoting com 100.0 1.1E-30 2.3E-35 226.3 22.2 239 90-436 216-462 (484)
59 KOG0274 Cdc4 and related F-box 100.0 2.3E-30 5.1E-35 232.9 25.3 257 70-439 223-486 (537)
60 KOG1446 Histone H3 (Lys4) meth 100.0 1.2E-28 2.6E-33 195.2 31.1 294 85-436 8-304 (311)
61 KOG0300 WD40 repeat-containing 100.0 2.7E-30 5.8E-35 204.4 21.4 324 82-439 139-480 (481)
62 KOG0289 mRNA splicing factor [ 100.0 8.2E-30 1.8E-34 209.6 24.0 262 68-434 234-505 (506)
63 KOG0313 Microtubule binding pr 100.0 2.2E-30 4.8E-35 209.3 20.1 295 65-383 115-417 (423)
64 KOG0294 WD40 repeat-containing 100.0 7.2E-30 1.6E-34 201.6 22.2 247 83-437 35-283 (362)
65 KOG0276 Vesicle coat complex C 100.0 6.4E-30 1.4E-34 219.5 22.9 268 64-437 24-300 (794)
66 KOG0316 Conserved WD40 repeat- 100.0 2.2E-29 4.8E-34 190.8 21.5 258 69-434 33-298 (307)
67 PTZ00420 coronin; Provisional 100.0 5.6E-29 1.2E-33 224.8 28.2 239 83-409 66-318 (568)
68 KOG0641 WD40 repeat protein [G 100.0 1.8E-27 3.9E-32 179.6 30.5 308 78-435 20-349 (350)
69 KOG0973 Histone transcription 100.0 5.1E-29 1.1E-33 227.5 26.7 308 88-437 9-357 (942)
70 PTZ00421 coronin; Provisional 100.0 5.9E-29 1.3E-33 223.7 26.7 250 90-438 19-293 (493)
71 KOG0310 Conserved WD40 repeat- 100.0 2.2E-29 4.8E-34 210.1 19.4 242 91-438 26-271 (487)
72 KOG0310 Conserved WD40 repeat- 100.0 4.3E-29 9.3E-34 208.4 20.9 247 84-435 61-309 (487)
73 PLN00181 protein SPA1-RELATED; 100.0 4.1E-28 8.9E-33 236.1 28.8 275 112-437 457-740 (793)
74 KOG0264 Nucleosome remodeling 100.0 1.6E-28 3.4E-33 203.5 20.8 263 84-435 117-404 (422)
75 KOG2055 WD40 repeat protein [G 100.0 6.4E-28 1.4E-32 200.1 24.3 292 91-435 213-512 (514)
76 KOG1274 WD40 repeat protein [G 100.0 1E-27 2.2E-32 215.0 26.1 252 88-436 10-263 (933)
77 KOG0299 U3 snoRNP-associated p 100.0 2.4E-28 5.2E-33 202.5 19.5 267 84-437 135-412 (479)
78 KOG0277 Peroxisomal targeting 100.0 3.7E-28 8E-33 186.3 17.9 188 221-438 75-268 (311)
79 KOG0265 U5 snRNP-specific prot 100.0 9.4E-28 2E-32 188.4 20.4 271 61-381 55-335 (338)
80 KOG0296 Angio-associated migra 100.0 1.4E-27 3.1E-32 192.3 19.7 262 132-439 58-360 (399)
81 cd00200 WD40 WD40 domain, foun 100.0 8.8E-27 1.9E-31 201.7 26.3 246 135-438 6-252 (289)
82 KOG0293 WD40 repeat-containing 100.0 1.1E-27 2.4E-32 196.0 18.8 267 65-385 236-514 (519)
83 KOG0641 WD40 repeat protein [G 100.0 1.9E-26 4.2E-31 174.0 24.1 255 84-383 82-348 (350)
84 KOG0269 WD40 repeat-containing 100.0 1.2E-28 2.5E-33 216.9 14.2 245 93-434 89-339 (839)
85 KOG0639 Transducin-like enhanc 100.0 2E-27 4.4E-32 199.3 20.8 285 89-434 417-703 (705)
86 KOG1332 Vesicle coat complex C 100.0 2.4E-27 5.2E-32 180.8 19.1 256 86-435 6-286 (299)
87 KOG0274 Cdc4 and related F-box 100.0 5.1E-27 1.1E-31 211.4 24.1 242 85-439 201-445 (537)
88 PTZ00420 coronin; Provisional 100.0 5.5E-26 1.2E-30 205.5 30.6 230 109-437 50-295 (568)
89 KOG1408 WD40 repeat protein [F 100.0 1.4E-26 3E-31 202.3 24.6 203 221-439 394-675 (1080)
90 KOG1446 Histone H3 (Lys4) meth 100.0 8.9E-26 1.9E-30 179.0 25.9 249 135-438 11-265 (311)
91 KOG0647 mRNA export protein (c 100.0 5.8E-26 1.3E-30 178.6 24.1 273 89-409 25-305 (347)
92 KOG4283 Transcription-coupled 100.0 3.6E-26 7.8E-31 179.2 22.5 308 87-436 39-366 (397)
93 KOG0264 Nucleosome remodeling 100.0 3.9E-27 8.4E-32 195.3 18.0 225 85-384 171-404 (422)
94 KOG0308 Conserved WD40 repeat- 100.0 2.5E-27 5.4E-32 204.6 16.2 194 221-437 87-287 (735)
95 KOG0278 Serine/threonine kinas 100.0 1.9E-27 4.1E-32 182.0 13.8 251 83-389 51-302 (334)
96 KOG2445 Nuclear pore complex c 100.0 7.7E-26 1.7E-30 178.4 23.0 258 88-435 10-318 (361)
97 KOG0301 Phospholipase A2-activ 100.0 1.2E-26 2.6E-31 201.9 19.7 243 83-435 6-249 (745)
98 KOG0321 WD40 repeat-containing 100.0 6.1E-26 1.3E-30 195.7 23.7 287 64-438 63-394 (720)
99 KOG0282 mRNA splicing factor [ 100.0 1E-26 2.3E-31 194.0 18.0 252 129-437 205-464 (503)
100 KOG0299 U3 snoRNP-associated p 99.9 2.9E-26 6.2E-31 190.3 20.3 249 88-432 199-453 (479)
101 KOG1063 RNA polymerase II elon 99.9 2.5E-26 5.3E-31 199.9 20.7 313 83-437 183-650 (764)
102 KOG0289 mRNA splicing factor [ 99.9 7.3E-26 1.6E-30 186.5 21.8 238 92-433 220-460 (506)
103 KOG0643 Translation initiation 99.9 6.1E-26 1.3E-30 175.4 19.5 270 83-385 44-318 (327)
104 KOG1273 WD40 repeat protein [G 99.9 1.4E-25 3E-30 177.6 21.8 293 94-438 26-325 (405)
105 KOG0640 mRNA cleavage stimulat 99.9 2.9E-26 6.4E-31 181.0 17.4 174 241-439 164-339 (430)
106 KOG1407 WD40 repeat protein [F 99.9 1.2E-25 2.6E-30 173.2 19.5 249 68-373 35-290 (313)
107 KOG0650 WD40 repeat nucleolar 99.9 2.9E-25 6.2E-30 190.3 22.7 310 84-433 393-733 (733)
108 KOG0301 Phospholipase A2-activ 99.9 1.1E-25 2.3E-30 196.0 19.9 252 68-435 28-288 (745)
109 KOG0268 Sof1-like rRNA process 99.9 1.9E-26 4.2E-31 185.6 13.7 269 62-388 76-349 (433)
110 KOG0646 WD40 repeat protein [G 99.9 3.2E-25 6.8E-30 184.5 21.0 202 213-439 88-311 (476)
111 KOG0973 Histone transcription 99.9 2E-25 4.2E-30 204.3 21.2 272 137-439 12-316 (942)
112 KOG0283 WD40 repeat-containing 99.9 4.6E-25 1E-29 196.8 23.0 220 77-385 355-577 (712)
113 KOG2048 WD40 repeat protein [G 99.9 5E-24 1.1E-28 185.3 28.7 256 89-439 23-279 (691)
114 KOG0308 Conserved WD40 repeat- 99.9 4.5E-26 9.8E-31 197.0 15.4 266 67-435 39-327 (735)
115 KOG0288 WD40 repeat protein Ti 99.9 1.1E-25 2.3E-30 184.3 16.4 259 67-381 189-458 (459)
116 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.4E-23 3E-28 183.1 30.9 278 103-439 1-283 (300)
117 KOG1036 Mitotic spindle checkp 99.9 5.8E-24 1.3E-28 168.0 25.2 295 90-438 12-319 (323)
118 KOG1408 WD40 repeat protein [F 99.9 2.8E-25 6.1E-30 194.3 19.2 262 81-436 449-714 (1080)
119 KOG1063 RNA polymerase II elon 99.9 3.2E-24 7E-29 186.9 24.9 302 87-435 263-699 (764)
120 KOG0267 Microtubule severing p 99.9 1.2E-26 2.7E-31 202.7 10.0 238 84-426 21-259 (825)
121 KOG0275 Conserved WD40 repeat- 99.9 1.6E-26 3.5E-31 183.7 9.4 170 248-439 212-382 (508)
122 KOG1539 WD repeat protein [Gen 99.9 3.3E-24 7.2E-29 190.6 24.0 333 69-438 261-609 (910)
123 KOG1332 Vesicle coat complex C 99.9 3.9E-25 8.4E-30 168.8 15.1 230 68-384 26-286 (299)
124 KOG4328 WD40 protein [Function 99.9 1.1E-23 2.3E-28 175.0 22.7 308 85-435 180-495 (498)
125 KOG0305 Anaphase promoting com 99.9 9.7E-24 2.1E-28 183.3 22.5 236 94-438 180-422 (484)
126 KOG0269 WD40 repeat-containing 99.9 2.3E-24 4.9E-29 190.1 17.5 189 221-437 102-298 (839)
127 KOG0267 Microtubule severing p 99.9 9.6E-26 2.1E-30 197.2 8.3 186 221-437 42-228 (825)
128 KOG0646 WD40 repeat protein [G 99.9 1.3E-23 2.8E-28 175.0 20.3 234 91-408 81-330 (476)
129 KOG0639 Transducin-like enhanc 99.9 3.7E-24 8E-29 179.9 15.9 248 134-437 415-665 (705)
130 KOG2106 Uncharacterized conser 99.9 2.8E-22 6.1E-27 168.7 26.2 318 84-437 97-479 (626)
131 KOG0294 WD40 repeat-containing 99.9 1.7E-22 3.6E-27 160.2 22.7 185 221-439 55-241 (362)
132 KOG0300 WD40 repeat-containing 99.9 6.1E-24 1.3E-28 168.6 14.3 195 221-439 162-390 (481)
133 KOG1034 Transcriptional repres 99.9 2.6E-22 5.6E-27 160.0 23.4 273 79-435 26-383 (385)
134 KOG4283 Transcription-coupled 99.9 4E-23 8.7E-28 162.2 18.5 235 135-440 40-281 (397)
135 KOG0647 mRNA export protein (c 99.9 1.5E-22 3.2E-27 159.6 20.7 251 67-373 42-311 (347)
136 KOG0772 Uncharacterized conser 99.9 8.6E-24 1.9E-28 178.2 14.7 207 215-438 176-397 (641)
137 KOG2106 Uncharacterized conser 99.9 5.7E-22 1.2E-26 166.9 24.3 317 69-434 261-625 (626)
138 KOG0302 Ribosome Assembly prot 99.9 3.9E-22 8.3E-27 161.9 22.1 267 81-376 141-431 (440)
139 KOG2919 Guanine nucleotide-bin 99.9 3.2E-22 7E-27 159.2 20.0 284 93-426 51-361 (406)
140 KOG1009 Chromatin assembly com 99.9 4.9E-22 1.1E-26 162.8 19.9 262 91-437 13-374 (434)
141 KOG1036 Mitotic spindle checkp 99.9 2.1E-21 4.6E-26 153.6 22.6 244 133-438 8-265 (323)
142 KOG0270 WD40 repeat-containing 99.9 6E-22 1.3E-26 164.2 19.2 191 218-438 255-452 (463)
143 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 8.7E-21 1.9E-25 165.4 27.4 264 84-407 24-300 (300)
144 KOG1274 WD40 repeat protein [G 99.9 2.8E-21 6.1E-26 174.1 23.9 240 69-409 29-282 (933)
145 KOG0307 Vesicle coat complex C 99.9 6.2E-23 1.3E-27 189.1 13.0 250 91-437 64-329 (1049)
146 KOG1445 Tumor-specific antigen 99.9 3.6E-22 7.8E-27 172.8 16.8 123 300-438 628-753 (1012)
147 KOG0302 Ribosome Assembly prot 99.9 5.1E-22 1.1E-26 161.2 15.9 191 221-436 167-379 (440)
148 KOG1240 Protein kinase contain 99.9 6.6E-21 1.4E-25 176.7 24.8 335 66-433 1023-1431(1431)
149 KOG1539 WD repeat protein [Gen 99.9 2.3E-21 5E-26 172.8 21.0 301 81-434 324-647 (910)
150 KOG0322 G-protein beta subunit 99.9 5.6E-22 1.2E-26 153.4 14.9 306 80-434 3-322 (323)
151 KOG0321 WD40 repeat-containing 99.9 5.7E-21 1.2E-25 165.4 21.5 261 97-438 55-350 (720)
152 KOG2096 WD40 repeat protein [G 99.9 4.5E-20 9.8E-25 146.8 23.7 340 3-385 7-403 (420)
153 KOG2445 Nuclear pore complex c 99.9 1.2E-20 2.6E-25 149.3 20.2 244 69-384 29-318 (361)
154 KOG4378 Nuclear protein COP1 [ 99.9 1.8E-20 3.8E-25 157.7 22.0 188 220-438 92-283 (673)
155 KOG2055 WD40 repeat protein [G 99.9 6.6E-21 1.4E-25 158.8 18.7 284 58-384 218-512 (514)
156 KOG2048 WD40 repeat protein [G 99.9 8E-20 1.7E-24 159.4 26.3 316 84-439 103-509 (691)
157 KOG0642 Cell-cycle nuclear pro 99.9 1.6E-21 3.5E-26 166.5 14.9 267 80-439 284-565 (577)
158 KOG1188 WD40 repeat protein [G 99.9 7.9E-21 1.7E-25 152.5 16.9 196 104-388 41-246 (376)
159 KOG0649 WD40 repeat protein [G 99.9 4.2E-20 9.1E-25 141.5 19.9 245 91-435 10-274 (325)
160 KOG0270 WD40 repeat-containing 99.9 3.2E-20 6.9E-25 154.0 18.9 189 221-439 194-408 (463)
161 KOG0307 Vesicle coat complex C 99.9 3E-21 6.4E-26 178.2 12.6 190 221-438 82-287 (1049)
162 KOG0290 Conserved WD40 repeat- 99.9 2.7E-19 5.8E-24 140.6 21.3 262 83-437 37-320 (364)
163 KOG1007 WD repeat protein TSSC 99.9 2.1E-19 4.5E-24 141.1 20.2 254 84-436 56-362 (370)
164 KOG4378 Nuclear protein COP1 [ 99.9 1.5E-20 3.2E-25 158.2 14.0 220 93-408 81-304 (673)
165 KOG1273 WD40 repeat protein [G 99.8 3.2E-19 6.8E-24 141.9 19.4 275 68-385 38-323 (405)
166 KOG2110 Uncharacterized conser 99.8 2.6E-17 5.7E-22 133.9 28.6 238 91-385 5-249 (391)
167 KOG0303 Actin-binding protein 99.8 1.9E-19 4.1E-24 147.3 16.4 215 84-387 74-297 (472)
168 KOG1334 WD40 repeat protein [G 99.8 3.1E-19 6.6E-24 150.1 17.8 315 84-436 135-467 (559)
169 KOG0644 Uncharacterized conser 99.8 6.5E-21 1.4E-25 170.0 8.4 246 83-438 182-429 (1113)
170 KOG2919 Guanine nucleotide-bin 99.8 1.7E-18 3.7E-23 138.2 21.1 266 139-436 50-328 (406)
171 KOG1524 WD40 repeat-containing 99.8 5.1E-19 1.1E-23 150.5 19.0 173 212-431 110-282 (737)
172 KOG4227 WD40 repeat protein [G 99.8 6.5E-19 1.4E-23 144.3 18.6 267 80-437 45-324 (609)
173 KOG0771 Prolactin regulatory e 99.8 1.2E-18 2.6E-23 144.1 19.2 200 210-436 148-355 (398)
174 KOG4328 WD40 protein [Function 99.8 7.2E-19 1.6E-23 146.6 17.8 256 137-438 185-453 (498)
175 PRK11028 6-phosphogluconolacto 99.8 5.4E-17 1.2E-21 142.7 28.9 285 107-435 6-304 (330)
176 KOG1587 Cytoplasmic dynein int 99.8 7.5E-18 1.6E-22 151.3 23.1 257 91-436 242-517 (555)
177 KOG1517 Guanine nucleotide bin 99.8 1.7E-17 3.7E-22 152.3 25.6 307 92-438 1065-1384(1387)
178 KOG0650 WD40 repeat nucleolar 99.8 1.3E-18 2.9E-23 149.9 16.1 287 56-381 403-732 (733)
179 KOG0303 Actin-binding protein 99.8 1E-17 2.3E-22 137.3 20.4 188 221-438 96-297 (472)
180 KOG1310 WD40 repeat protein [G 99.8 1.5E-18 3.3E-23 148.1 15.9 237 84-391 43-310 (758)
181 KOG2321 WD40 repeat protein [G 99.8 1.2E-17 2.6E-22 143.4 21.2 288 89-437 49-345 (703)
182 COG2319 FOG: WD40 repeat [Gene 99.8 1.1E-16 2.3E-21 147.5 29.4 250 86-438 60-317 (466)
183 KOG1523 Actin-related protein 99.8 3.5E-17 7.6E-22 130.7 22.0 242 90-408 9-260 (361)
184 KOG1538 Uncharacterized conser 99.8 2.2E-18 4.8E-23 150.6 15.3 244 82-435 44-293 (1081)
185 KOG1009 Chromatin assembly com 99.8 1.7E-17 3.8E-22 136.5 18.9 145 67-280 28-196 (434)
186 KOG0290 Conserved WD40 repeat- 99.8 2E-17 4.3E-22 130.3 17.2 207 89-381 148-362 (364)
187 PRK11028 6-phosphogluconolacto 99.8 8E-16 1.7E-20 135.3 29.7 257 90-384 33-304 (330)
188 KOG1963 WD40 repeat protein [G 99.8 5.5E-17 1.2E-21 146.4 21.9 337 65-437 217-585 (792)
189 KOG1007 WD repeat protein TSSC 99.8 1.7E-17 3.7E-22 130.5 16.4 224 84-383 115-360 (370)
190 PRK01742 tolB translocation pr 99.8 3.2E-17 7E-22 148.4 20.3 222 84-408 196-426 (429)
191 KOG1034 Transcriptional repres 99.8 9.3E-18 2E-22 134.3 13.2 246 83-384 127-383 (385)
192 KOG1445 Tumor-specific antigen 99.8 1.5E-17 3.3E-22 144.6 15.4 190 221-437 642-846 (1012)
193 KOG1272 WD40-repeat-containing 99.8 8.5E-18 1.8E-22 140.7 12.1 257 93-409 131-391 (545)
194 KOG1963 WD40 repeat protein [G 99.8 6.7E-16 1.5E-20 139.4 24.8 298 89-436 203-539 (792)
195 KOG4497 Uncharacterized conser 99.8 1.4E-16 3.1E-21 127.7 17.8 283 91-436 48-392 (447)
196 KOG0771 Prolactin regulatory e 99.8 6.4E-17 1.4E-21 134.0 16.3 199 95-384 148-354 (398)
197 COG2319 FOG: WD40 repeat [Gene 99.7 3.6E-15 7.9E-20 137.3 29.3 264 72-438 131-403 (466)
198 KOG1188 WD40 repeat protein [G 99.7 8.3E-17 1.8E-21 129.7 14.1 149 262-437 41-198 (376)
199 PRK01742 tolB translocation pr 99.7 7E-16 1.5E-20 139.8 22.0 216 112-434 183-400 (429)
200 KOG0649 WD40 repeat protein [G 99.7 9.3E-17 2E-21 123.4 12.8 175 252-439 13-190 (325)
201 KOG2111 Uncharacterized conser 99.7 4.4E-14 9.6E-19 113.2 28.1 245 94-386 8-258 (346)
202 KOG0642 Cell-cycle nuclear pro 99.7 1.1E-16 2.5E-21 137.2 14.3 233 67-333 308-565 (577)
203 KOG2394 WD40 protein DMR-N9 [G 99.7 3.5E-15 7.7E-20 127.5 22.3 201 221-436 187-453 (636)
204 KOG1524 WD40 repeat-containing 99.7 1.3E-16 2.9E-21 136.0 13.5 184 84-379 97-281 (737)
205 PRK03629 tolB translocation pr 99.7 6.4E-15 1.4E-19 133.1 24.0 225 86-408 193-428 (429)
206 KOG1354 Serine/threonine prote 99.7 2.9E-15 6.3E-20 121.0 17.0 298 91-437 25-361 (433)
207 KOG2139 WD40 repeat protein [G 99.7 3.6E-14 7.8E-19 115.6 23.0 309 91-434 98-430 (445)
208 KOG1409 Uncharacterized conser 99.7 3.7E-15 8E-20 120.5 17.1 337 80-437 13-396 (404)
209 KOG1538 Uncharacterized conser 99.7 3.4E-15 7.4E-20 131.0 17.1 233 93-435 14-252 (1081)
210 PRK04922 tolB translocation pr 99.7 3.1E-14 6.8E-19 129.3 24.2 226 84-407 196-432 (433)
211 KOG1523 Actin-related protein 99.7 1.3E-14 2.8E-19 116.2 18.0 193 221-437 24-238 (361)
212 KOG1517 Guanine nucleotide bin 99.7 1.5E-14 3.3E-19 133.3 21.0 257 91-387 1109-1384(1387)
213 PRK05137 tolB translocation pr 99.7 5.8E-14 1.3E-18 127.8 24.4 224 84-408 194-433 (435)
214 PRK02889 tolB translocation pr 99.6 6.4E-14 1.4E-18 126.9 23.4 224 85-408 189-425 (427)
215 KOG2394 WD40 protein DMR-N9 [G 99.6 5.4E-15 1.2E-19 126.4 14.6 197 101-309 183-384 (636)
216 KOG3881 Uncharacterized conser 99.6 3.1E-14 6.8E-19 117.1 18.2 222 87-334 101-325 (412)
217 KOG4227 WD40 repeat protein [G 99.6 3.9E-14 8.4E-19 116.6 18.5 274 67-434 70-386 (609)
218 PF08662 eIF2A: Eukaryotic tra 99.6 5E-14 1.1E-18 112.0 18.5 154 95-331 9-181 (194)
219 KOG3881 Uncharacterized conser 99.6 5.5E-14 1.2E-18 115.7 18.8 187 221-437 117-322 (412)
220 KOG1587 Cytoplasmic dynein int 99.6 1.3E-13 2.9E-18 124.3 23.1 203 221-437 257-474 (555)
221 PF08662 eIF2A: Eukaryotic tra 99.6 4.4E-14 9.5E-19 112.4 17.5 149 253-436 9-180 (194)
222 KOG4497 Uncharacterized conser 99.6 5.2E-15 1.1E-19 118.9 12.0 172 221-433 63-238 (447)
223 KOG0322 G-protein beta subunit 99.6 3.5E-14 7.6E-19 110.7 16.1 145 221-383 167-322 (323)
224 KOG2110 Uncharacterized conser 99.6 4.8E-13 1E-17 109.5 23.0 176 228-437 67-250 (391)
225 PRK03629 tolB translocation pr 99.6 6.1E-13 1.3E-17 120.3 26.2 172 229-436 223-407 (429)
226 KOG1310 WD40 repeat protein [G 99.6 3.9E-14 8.5E-19 121.6 15.8 207 221-439 64-307 (758)
227 PRK05137 tolB translocation pr 99.6 9.4E-13 2E-17 119.9 25.7 174 228-437 225-414 (435)
228 KOG1272 WD40-repeat-containing 99.6 4.2E-15 9.1E-20 124.8 9.0 195 207-437 130-325 (545)
229 PRK04922 tolB translocation pr 99.6 9.6E-13 2.1E-17 119.7 23.1 173 229-437 228-413 (433)
230 PF02239 Cytochrom_D1: Cytochr 99.6 7.4E-12 1.6E-16 109.8 27.3 298 84-438 29-350 (369)
231 KOG2111 Uncharacterized conser 99.6 2.8E-12 6E-17 103.1 22.0 178 229-437 75-258 (346)
232 KOG0644 Uncharacterized conser 99.6 1.8E-14 3.9E-19 129.5 9.5 262 62-439 199-472 (1113)
233 PF10282 Lactonase: Lactonase, 99.5 3.1E-11 6.7E-16 106.3 29.4 293 106-435 2-322 (345)
234 PRK02889 tolB translocation pr 99.5 3.3E-12 7.1E-17 115.8 23.7 167 229-427 220-392 (427)
235 TIGR02800 propeller_TolB tol-p 99.5 2.7E-12 5.7E-17 117.2 22.9 222 84-405 182-416 (417)
236 KOG2314 Translation initiation 99.5 1.1E-11 2.3E-16 107.1 23.8 281 94-435 213-573 (698)
237 PRK00178 tolB translocation pr 99.5 9.6E-12 2.1E-16 113.6 25.5 224 85-408 192-428 (430)
238 PRK04792 tolB translocation pr 99.5 5.1E-12 1.1E-16 114.9 22.6 222 89-408 215-447 (448)
239 PRK01029 tolB translocation pr 99.5 1.3E-11 2.8E-16 111.3 23.9 230 87-408 180-425 (428)
240 KOG1240 Protein kinase contain 99.5 4E-12 8.8E-17 119.5 20.0 207 215-439 1057-1277(1431)
241 COG2706 3-carboxymuconate cycl 99.5 1.2E-09 2.6E-14 90.1 31.4 297 86-406 34-345 (346)
242 PF10282 Lactonase: Lactonase, 99.5 1.8E-10 4E-15 101.4 28.9 288 91-405 36-345 (345)
243 COG2706 3-carboxymuconate cycl 99.5 3.4E-10 7.3E-15 93.3 27.5 285 112-436 15-322 (346)
244 KOG2321 WD40 repeat protein [G 99.5 3.6E-12 7.7E-17 110.4 16.6 210 212-439 57-306 (703)
245 KOG0974 WD-repeat protein WDR6 99.5 2.8E-12 6.1E-17 118.6 16.9 184 221-436 101-289 (967)
246 KOG2315 Predicted translation 99.5 4.9E-10 1.1E-14 97.2 28.6 301 91-436 34-391 (566)
247 KOG4547 WD40 repeat-containing 99.5 2.1E-11 4.6E-16 106.2 20.3 141 221-385 72-221 (541)
248 TIGR02800 propeller_TolB tol-p 99.4 7.5E-11 1.6E-15 107.7 23.9 171 229-435 214-397 (417)
249 KOG0280 Uncharacterized conser 99.4 3.6E-11 7.7E-16 95.7 18.0 191 221-440 135-338 (339)
250 PRK01029 tolB translocation pr 99.4 3.2E-10 7E-15 102.3 26.1 182 230-438 212-406 (428)
251 KOG2139 WD40 repeat protein [G 99.4 8E-12 1.7E-16 102.2 13.8 168 249-436 98-269 (445)
252 KOG4547 WD40 repeat-containing 99.4 4.9E-11 1.1E-15 104.0 18.0 190 220-436 6-221 (541)
253 PRK00178 tolB translocation pr 99.4 4E-10 8.7E-15 103.0 25.1 172 229-436 223-407 (430)
254 KOG1064 RAVE (regulator of V-A 99.4 7.7E-12 1.7E-16 121.9 13.7 232 87-428 2204-2439(2439)
255 KOG1334 WD40 repeat protein [G 99.4 4.2E-11 9E-16 101.9 16.0 268 132-438 136-427 (559)
256 PF02239 Cytochrom_D1: Cytochr 99.4 2.6E-10 5.7E-15 100.2 21.8 193 221-437 8-204 (369)
257 COG5354 Uncharacterized protei 99.4 1.1E-09 2.4E-14 94.0 24.4 277 92-437 72-397 (561)
258 PRK04792 tolB translocation pr 99.4 9.3E-10 2E-14 100.2 26.0 171 230-436 243-426 (448)
259 KOG4190 Uncharacterized conser 99.4 8.6E-12 1.9E-16 107.8 11.3 293 82-431 726-1032(1034)
260 COG5170 CDC55 Serine/threonine 99.3 3.3E-11 7.1E-16 96.8 13.8 173 247-434 170-366 (460)
261 TIGR02658 TTQ_MADH_Hv methylam 99.3 7E-09 1.5E-13 89.1 28.9 282 113-438 27-333 (352)
262 COG4946 Uncharacterized protei 99.3 6.1E-09 1.3E-13 88.8 26.6 129 256-409 366-500 (668)
263 KOG4532 WD40-like repeat conta 99.3 1.6E-09 3.4E-14 85.4 19.4 175 221-409 130-314 (344)
264 KOG3914 WD repeat protein WDR4 99.3 1.5E-10 3.3E-15 96.3 14.4 158 253-439 66-227 (390)
265 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.2E-08 2.5E-13 87.8 25.6 250 99-392 53-338 (352)
266 PLN02919 haloacid dehalogenase 99.3 1E-08 2.3E-13 102.2 28.6 175 253-438 686-891 (1057)
267 KOG2315 Predicted translation 99.2 5.1E-09 1.1E-13 91.1 21.4 255 95-409 129-412 (566)
268 PF04762 IKI3: IKI3 family; I 99.2 5.4E-08 1.2E-12 95.3 30.9 312 90-436 74-457 (928)
269 KOG3914 WD repeat protein WDR4 99.2 4.6E-10 1E-14 93.5 14.1 102 225-336 128-230 (390)
270 KOG4714 Nucleoporin [Nuclear s 99.2 2.9E-10 6.3E-15 89.0 11.9 93 231-330 161-255 (319)
271 KOG0309 Conserved WD40 repeat- 99.2 3.6E-10 7.8E-15 101.3 13.9 294 91-436 24-340 (1081)
272 KOG0974 WD-repeat protein WDR6 99.2 1.4E-09 3.1E-14 101.1 17.7 141 221-384 147-288 (967)
273 PF04762 IKI3: IKI3 family; I 99.2 2E-07 4.2E-12 91.5 32.9 305 91-436 120-520 (928)
274 KOG0882 Cyclophilin-related pe 99.2 1.2E-09 2.5E-14 92.4 14.9 263 90-439 8-309 (558)
275 KOG2041 WD40 repeat protein [G 99.2 4.7E-10 1E-14 100.3 13.1 244 92-426 15-279 (1189)
276 PF15492 Nbas_N: Neuroblastoma 99.2 1.9E-07 4.2E-12 75.0 26.2 144 263-438 111-262 (282)
277 KOG1064 RAVE (regulator of V-A 99.1 5.8E-10 1.3E-14 109.3 13.0 174 221-437 2222-2400(2439)
278 PF07433 DUF1513: Protein of u 99.1 3E-07 6.5E-12 76.3 26.6 172 227-425 75-276 (305)
279 KOG1409 Uncharacterized conser 99.1 1.5E-09 3.3E-14 88.5 12.7 205 221-437 38-272 (404)
280 PRK04043 tolB translocation pr 99.1 5E-08 1.1E-12 87.6 23.8 130 229-386 257-402 (419)
281 COG4946 Uncharacterized protei 99.1 2.3E-07 5E-12 79.5 25.9 250 89-436 357-655 (668)
282 PF00400 WD40: WD domain, G-be 99.1 1.7E-10 3.7E-15 65.5 4.9 37 83-119 3-39 (39)
283 KOG1354 Serine/threonine prote 99.1 5.1E-09 1.1E-13 85.6 14.5 214 91-331 84-361 (433)
284 KOG2041 WD40 repeat protein [G 99.0 1.3E-08 2.8E-13 91.4 15.5 235 84-409 64-320 (1189)
285 TIGR03300 assembly_YfgL outer 99.0 1.8E-06 3.9E-11 77.7 28.9 267 102-438 64-341 (377)
286 PF07433 DUF1513: Protein of u 99.0 2.4E-07 5.2E-12 76.9 20.9 220 80-382 45-283 (305)
287 KOG1912 WD40 repeat protein [G 99.0 8.5E-08 1.8E-12 87.0 19.5 267 90-436 14-305 (1062)
288 KOG1832 HIV-1 Vpr-binding prot 99.0 1E-09 2.2E-14 100.6 7.4 257 83-409 1093-1371(1516)
289 KOG0280 Uncharacterized conser 99.0 2E-08 4.4E-13 80.4 13.5 149 221-387 180-336 (339)
290 PF08450 SGL: SMP-30/Gluconola 99.0 2.8E-06 6.1E-11 71.4 27.3 168 222-408 54-236 (246)
291 PRK04043 tolB translocation pr 99.0 7.8E-07 1.7E-11 80.1 25.0 165 215-409 196-379 (419)
292 PF00400 WD40: WD domain, G-be 98.9 6.2E-09 1.3E-13 59.0 6.5 37 291-327 3-39 (39)
293 PF15492 Nbas_N: Neuroblastoma 98.9 6.1E-07 1.3E-11 72.3 19.7 114 221-334 111-264 (282)
294 PLN02919 haloacid dehalogenase 98.9 4.3E-07 9.4E-12 90.9 23.0 208 212-438 573-836 (1057)
295 KOG4532 WD40-like repeat conta 98.9 1.3E-06 2.8E-11 69.4 20.6 191 221-438 86-285 (344)
296 COG5354 Uncharacterized protei 98.9 2.8E-07 6E-12 79.7 17.5 253 90-436 31-307 (561)
297 KOG2695 WD40 repeat protein [G 98.9 3.2E-08 7E-13 81.1 11.0 168 223-407 228-402 (425)
298 KOG2314 Translation initiation 98.9 1.9E-06 4.1E-11 75.5 22.1 268 90-386 249-575 (698)
299 KOG1912 WD40 repeat protein [G 98.9 1.4E-07 3E-12 85.7 15.7 219 82-385 46-305 (1062)
300 KOG0309 Conserved WD40 repeat- 98.9 1.2E-08 2.5E-13 91.9 8.9 202 208-437 26-234 (1081)
301 KOG4190 Uncharacterized conser 98.8 1.4E-08 3.1E-13 88.4 8.1 174 242-438 728-909 (1034)
302 KOG1275 PAB-dependent poly(A) 98.8 1.3E-07 2.9E-12 87.4 14.4 178 221-433 149-340 (1118)
303 KOG0882 Cyclophilin-related pe 98.8 9.4E-08 2E-12 81.2 12.1 253 69-392 24-313 (558)
304 KOG4714 Nucleoporin [Nuclear s 98.8 6.7E-08 1.4E-12 76.2 10.2 161 248-436 88-255 (319)
305 TIGR03300 assembly_YfgL outer 98.8 6.1E-06 1.3E-10 74.3 24.2 175 221-432 192-376 (377)
306 PF13360 PQQ_2: PQQ-like domai 98.7 3.7E-06 8.1E-11 70.4 19.9 190 221-438 38-233 (238)
307 KOG2695 WD40 repeat protein [G 98.7 9.2E-08 2E-12 78.5 8.7 110 221-336 266-383 (425)
308 KOG2066 Vacuolar assembly/sort 98.7 2.3E-06 4.9E-11 78.5 18.2 144 221-384 85-233 (846)
309 KOG1920 IkappaB kinase complex 98.7 1.2E-05 2.7E-10 77.3 23.2 235 91-387 68-325 (1265)
310 KOG1645 RING-finger-containing 98.7 3.1E-06 6.7E-11 71.2 16.5 248 84-436 186-462 (463)
311 KOG2114 Vacuolar assembly/sort 98.6 7E-06 1.5E-10 76.0 19.2 203 215-438 32-246 (933)
312 PF06433 Me-amine-dh_H: Methyl 98.6 3E-05 6.5E-10 65.5 21.4 191 228-438 117-323 (342)
313 KOG1920 IkappaB kinase complex 98.6 2.4E-05 5.2E-10 75.4 22.9 191 221-436 82-323 (1265)
314 COG5170 CDC55 Serine/threonine 98.5 2.8E-06 6E-11 69.1 13.0 172 251-438 87-312 (460)
315 KOG2114 Vacuolar assembly/sort 98.5 1.3E-05 2.9E-10 74.2 18.7 138 248-402 124-261 (933)
316 KOG2066 Vacuolar assembly/sort 98.5 5.9E-06 1.3E-10 75.9 16.0 173 221-435 51-233 (846)
317 PRK11138 outer membrane biogen 98.5 0.00014 3E-09 65.9 25.0 185 221-438 162-356 (394)
318 PRK02888 nitrous-oxide reducta 98.5 5.6E-05 1.2E-09 69.3 21.3 187 215-436 201-405 (635)
319 PRK11138 outer membrane biogen 98.5 0.00011 2.3E-09 66.6 23.0 178 221-435 207-394 (394)
320 PRK02888 nitrous-oxide reducta 98.5 4.5E-05 9.7E-10 69.9 19.9 154 215-373 285-449 (635)
321 PF11768 DUF3312: Protein of u 98.4 1.3E-05 2.8E-10 71.5 15.6 74 248-331 258-331 (545)
322 PF08450 SGL: SMP-30/Gluconola 98.4 0.00016 3.4E-09 60.8 20.3 186 215-435 8-213 (246)
323 KOG1275 PAB-dependent poly(A) 98.3 2.2E-05 4.7E-10 73.3 13.5 141 221-382 189-340 (1118)
324 KOG3621 WD40 repeat-containing 98.3 0.0001 2.2E-09 67.1 16.9 60 221-280 90-155 (726)
325 PF11768 DUF3312: Protein of u 98.2 0.0035 7.5E-08 56.6 28.3 96 297-408 257-368 (545)
326 PF06977 SdiA-regulated: SdiA- 98.2 0.00068 1.5E-08 55.9 19.7 127 249-381 117-247 (248)
327 PF13360 PQQ_2: PQQ-like domai 98.2 0.00054 1.2E-08 57.3 20.0 143 221-390 78-236 (238)
328 KOG1008 Uncharacterized conser 98.2 1.1E-06 2.5E-11 78.3 3.6 190 219-436 70-276 (783)
329 KOG1832 HIV-1 Vpr-binding prot 98.2 2.7E-06 5.8E-11 79.0 5.9 160 240-437 1092-1257(1516)
330 PF08553 VID27: VID27 cytoplas 98.2 0.00014 3E-09 69.3 16.9 144 221-383 495-646 (794)
331 PF06977 SdiA-regulated: SdiA- 98.2 0.0017 3.7E-08 53.6 21.1 208 210-432 25-247 (248)
332 KOG3621 WD40 repeat-containing 98.1 3.3E-05 7.1E-10 70.2 11.4 112 216-330 43-155 (726)
333 cd00216 PQQ_DH Dehydrogenases 98.1 0.0051 1.1E-07 57.3 25.7 178 227-439 173-428 (488)
334 PF08596 Lgl_C: Lethal giant l 98.1 0.002 4.4E-08 57.4 21.6 174 221-438 99-293 (395)
335 smart00320 WD40 WD40 repeats. 98.1 6.8E-06 1.5E-10 46.0 4.1 37 83-119 4-40 (40)
336 COG0823 TolB Periplasmic compo 98.1 0.00067 1.5E-08 61.0 18.4 189 138-373 192-387 (425)
337 KOG3617 WD40 and TPR repeat-co 98.0 5.6E-05 1.2E-09 70.2 11.1 94 228-331 40-133 (1416)
338 PRK13616 lipoprotein LpqB; Pro 98.0 0.0022 4.9E-08 60.4 21.7 172 89-329 347-525 (591)
339 KOG1008 Uncharacterized conser 98.0 3E-06 6.6E-11 75.7 2.6 101 221-330 168-276 (783)
340 COG3391 Uncharacterized conser 98.0 0.0048 1E-07 55.4 22.9 198 210-436 77-284 (381)
341 COG0823 TolB Periplasmic compo 98.0 0.0006 1.3E-08 61.4 16.3 188 91-318 192-388 (425)
342 KOG1645 RING-finger-containing 98.0 0.00013 2.9E-09 61.8 11.2 93 231-332 175-269 (463)
343 PF04053 Coatomer_WDAD: Coatom 97.9 0.0027 5.8E-08 57.5 19.7 228 138-435 32-262 (443)
344 KOG4649 PQQ (pyrrolo-quinoline 97.8 0.0087 1.9E-07 48.2 18.3 111 215-336 19-130 (354)
345 PF04841 Vps16_N: Vps16, N-ter 97.8 0.024 5.1E-07 51.4 23.9 53 357-409 218-271 (410)
346 PF04053 Coatomer_WDAD: Coatom 97.8 0.0013 2.8E-08 59.5 15.7 142 247-434 30-172 (443)
347 smart00320 WD40 WD40 repeats. 97.8 8.2E-05 1.8E-09 41.3 5.3 37 291-327 4-40 (40)
348 COG3490 Uncharacterized protei 97.8 0.015 3.2E-07 47.7 19.9 197 215-434 122-347 (366)
349 KOG3617 WD40 and TPR repeat-co 97.7 0.0012 2.6E-08 61.9 14.2 35 88-122 98-132 (1416)
350 COG3386 Gluconolactonase [Carb 97.7 0.027 5.8E-07 48.4 21.7 151 252-426 113-277 (307)
351 PRK13616 lipoprotein LpqB; Pro 97.7 0.0036 7.7E-08 59.1 16.6 181 228-434 328-524 (591)
352 PF00930 DPPIV_N: Dipeptidyl p 97.6 0.041 8.9E-07 49.0 23.9 256 91-409 42-339 (353)
353 COG3391 Uncharacterized conser 97.6 0.044 9.4E-07 49.3 22.7 164 227-408 138-309 (381)
354 PF00930 DPPIV_N: Dipeptidyl p 97.6 0.033 7E-07 49.7 21.5 245 100-435 1-266 (353)
355 KOG4640 Anaphase-promoting com 97.6 0.0004 8.6E-09 62.7 9.1 77 250-335 21-98 (665)
356 PF03178 CPSF_A: CPSF A subuni 97.6 0.0042 9E-08 54.6 15.6 180 230-436 3-203 (321)
357 PF02897 Peptidase_S9_N: Proly 97.5 0.069 1.5E-06 48.9 27.2 261 92-439 124-408 (414)
358 KOG4649 PQQ (pyrrolo-quinoline 97.5 0.033 7.2E-07 45.1 25.4 140 103-276 23-162 (354)
359 PF04841 Vps16_N: Vps16, N-ter 97.5 0.019 4.2E-07 51.9 18.8 183 230-435 62-246 (410)
360 KOG2395 Protein involved in va 97.5 0.0066 1.4E-07 54.0 14.6 150 216-383 343-499 (644)
361 PF14655 RAB3GAP2_N: Rab3 GTPa 97.5 0.07 1.5E-06 47.8 24.4 83 355-438 307-401 (415)
362 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.013 2.8E-07 40.9 13.2 95 215-324 11-109 (111)
363 PF03178 CPSF_A: CPSF A subuni 97.5 0.061 1.3E-06 47.3 21.0 98 228-330 106-203 (321)
364 KOG4640 Anaphase-promoting com 97.4 0.00065 1.4E-08 61.3 8.2 94 299-407 20-115 (665)
365 PF08596 Lgl_C: Lethal giant l 97.4 0.0024 5.2E-08 57.0 11.0 236 82-328 77-334 (395)
366 PF08553 VID27: VID27 cytoplas 97.4 0.007 1.5E-07 58.2 14.6 140 268-434 501-646 (794)
367 PF00780 CNH: CNH domain; Int 97.3 0.08 1.7E-06 45.4 23.6 154 260-438 103-258 (275)
368 COG3490 Uncharacterized protei 97.3 0.057 1.2E-06 44.5 17.0 165 215-409 44-237 (366)
369 PF00780 CNH: CNH domain; Int 97.3 0.026 5.6E-07 48.4 16.1 157 258-438 4-168 (275)
370 PF14870 PSII_BNR: Photosynthe 97.2 0.11 2.4E-06 44.5 27.6 157 248-432 143-301 (302)
371 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.021 4.5E-07 39.9 11.6 105 302-431 2-110 (111)
372 KOG2444 WD40 repeat protein [G 97.2 0.00079 1.7E-08 53.0 5.3 102 221-330 72-178 (238)
373 cd00216 PQQ_DH Dehydrogenases 97.1 0.057 1.2E-06 50.5 18.0 205 221-439 63-323 (488)
374 KOG2444 WD40 repeat protein [G 97.1 0.001 2.2E-08 52.4 4.7 105 311-436 70-178 (238)
375 PF12894 Apc4_WD40: Anaphase-p 97.0 0.0032 6.9E-08 36.5 5.2 32 396-435 10-41 (47)
376 PF12894 Apc4_WD40: Anaphase-p 96.9 0.004 8.8E-08 36.0 5.2 31 91-121 11-41 (47)
377 PHA02713 hypothetical protein; 96.9 0.072 1.6E-06 50.6 16.1 184 221-437 306-535 (557)
378 KOG2395 Protein involved in va 96.8 0.034 7.3E-07 49.8 12.5 144 264-434 349-499 (644)
379 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.8 0.46 9.9E-06 44.8 24.4 26 309-334 310-338 (527)
380 TIGR03074 PQQ_membr_DH membran 96.7 0.59 1.3E-05 46.0 21.4 203 221-439 196-481 (764)
381 KOG1897 Damage-specific DNA bi 96.7 0.66 1.4E-05 45.4 27.2 175 231-437 752-944 (1096)
382 PF10647 Gmad1: Lipoprotein Lp 96.7 0.3 6.4E-06 41.1 18.0 155 140-321 25-187 (253)
383 KOG2079 Vacuolar assembly/sort 96.7 0.0066 1.4E-07 58.7 7.5 101 310-434 98-202 (1206)
384 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.6 0.56 1.2E-05 44.2 20.0 200 221-439 71-337 (527)
385 KOG1916 Nuclear protein, conta 96.6 0.0054 1.2E-07 58.2 6.6 110 221-334 197-328 (1283)
386 PF06433 Me-amine-dh_H: Methyl 96.6 0.13 2.9E-06 44.2 14.2 164 104-282 148-323 (342)
387 PF12234 Rav1p_C: RAVE protein 96.6 0.088 1.9E-06 49.6 14.2 130 244-383 24-155 (631)
388 KOG4441 Proteins containing BT 96.6 0.46 1E-05 45.2 19.0 185 221-437 335-548 (571)
389 KOG1897 Damage-specific DNA bi 96.5 0.92 2E-05 44.5 24.4 72 355-437 774-858 (1096)
390 PF02897 Peptidase_S9_N: Proly 96.5 0.66 1.4E-05 42.6 21.0 197 214-435 131-357 (414)
391 PF05096 Glu_cyclase_2: Glutam 96.5 0.4 8.6E-06 39.8 17.9 180 216-425 54-251 (264)
392 PF12234 Rav1p_C: RAVE protein 96.5 0.23 4.9E-06 47.0 15.9 141 271-434 1-155 (631)
393 KOG2079 Vacuolar assembly/sort 96.5 0.0088 1.9E-07 57.9 7.0 98 221-328 101-202 (1206)
394 COG3386 Gluconolactonase [Carb 96.4 0.52 1.1E-05 40.7 19.3 113 197-318 152-274 (307)
395 COG3204 Uncharacterized protei 96.4 0.46 1E-05 39.7 20.5 82 249-330 180-264 (316)
396 PF05694 SBP56: 56kDa selenium 96.4 0.7 1.5E-05 41.2 18.9 257 69-332 40-345 (461)
397 KOG4499 Ca2+-binding protein R 96.3 0.44 9.5E-06 38.3 15.2 101 302-408 160-264 (310)
398 PF14727 PHTB1_N: PTHB1 N-term 96.2 0.86 1.9E-05 41.1 27.1 163 102-278 36-203 (418)
399 PF10647 Gmad1: Lipoprotein Lp 96.2 0.6 1.3E-05 39.3 20.9 150 212-374 29-184 (253)
400 PHA02790 Kelch-like protein; P 96.2 0.67 1.4E-05 43.3 17.9 182 221-437 274-472 (480)
401 PF07995 GSDH: Glucose / Sorbo 96.2 0.8 1.7E-05 40.4 20.9 57 366-430 270-330 (331)
402 PF14870 PSII_BNR: Photosynthe 96.0 0.7 1.5E-05 39.7 15.5 61 89-154 142-202 (302)
403 PF08728 CRT10: CRT10; InterP 96.0 0.26 5.7E-06 47.0 13.9 130 302-434 103-245 (717)
404 PF07569 Hira: TUP1-like enhan 96.0 0.061 1.3E-06 43.9 8.7 79 308-386 19-97 (219)
405 PF14761 HPS3_N: Hermansky-Pud 95.9 0.71 1.5E-05 36.8 18.3 55 105-163 30-84 (215)
406 PHA02713 hypothetical protein; 95.7 0.58 1.3E-05 44.6 15.4 95 230-331 433-535 (557)
407 KOG3630 Nuclear pore complex, 95.7 0.079 1.7E-06 52.1 9.3 90 221-317 170-261 (1405)
408 PHA03098 kelch-like protein; P 95.7 1.1 2.4E-05 42.8 17.2 104 221-332 297-417 (534)
409 PF10168 Nup88: Nuclear pore c 95.6 0.65 1.4E-05 45.2 15.1 79 354-437 83-181 (717)
410 TIGR02604 Piru_Ver_Nterm putat 95.5 0.57 1.2E-05 42.1 13.8 148 251-409 15-195 (367)
411 PF15390 DUF4613: Domain of un 95.4 0.95 2.1E-05 41.8 14.5 70 253-329 116-186 (671)
412 KOG4441 Proteins containing BT 95.4 0.75 1.6E-05 43.8 14.8 183 221-436 287-500 (571)
413 PF15390 DUF4613: Domain of un 95.4 0.68 1.5E-05 42.6 13.4 121 298-435 55-186 (671)
414 PF10313 DUF2415: Uncharacteri 95.3 0.077 1.7E-06 29.8 4.8 31 92-122 1-34 (43)
415 PF14583 Pectate_lyase22: Olig 95.3 1.9 4.1E-05 38.2 21.8 98 298-409 186-294 (386)
416 PF10214 Rrn6: RNA polymerase 95.2 3.8 8.1E-05 41.0 21.4 161 247-409 77-258 (765)
417 COG3204 Uncharacterized protei 95.2 1.7 3.6E-05 36.6 15.4 171 247-435 83-263 (316)
418 KOG2377 Uncharacterized conser 95.1 1.5 3.2E-05 39.1 14.2 101 298-409 65-165 (657)
419 PF12657 TFIIIC_delta: Transcr 94.9 0.29 6.3E-06 38.4 9.0 36 399-436 87-122 (173)
420 KOG1900 Nuclear pore complex, 94.9 0.8 1.7E-05 46.4 13.5 148 268-436 96-273 (1311)
421 PF14781 BBS2_N: Ciliary BBSom 94.7 1.2 2.5E-05 32.6 12.9 119 306-435 5-125 (136)
422 COG5167 VID27 Protein involved 94.5 1.7 3.7E-05 39.4 13.3 149 216-384 477-632 (776)
423 PF10313 DUF2415: Uncharacteri 94.3 0.19 4.2E-06 28.2 4.7 31 300-330 1-34 (43)
424 PRK10115 protease 2; Provision 94.2 6.2 0.00014 38.9 19.7 177 228-435 152-344 (686)
425 KOG3630 Nuclear pore complex, 94.2 1.3 2.8E-05 44.2 12.8 146 250-409 101-255 (1405)
426 TIGR02604 Piru_Ver_Nterm putat 94.1 4.1 8.8E-05 36.7 15.5 18 92-109 14-31 (367)
427 PHA03098 kelch-like protein; P 94.1 5.4 0.00012 38.1 17.3 95 229-331 406-513 (534)
428 TIGR03118 PEPCTERM_chp_1 conse 94.0 3.5 7.5E-05 35.0 23.8 245 93-408 24-308 (336)
429 KOG1983 Tomosyn and related SN 93.9 1.8 3.8E-05 44.3 14.0 68 357-438 200-267 (993)
430 KOG2280 Vacuolar assembly/sort 93.9 3.4 7.3E-05 39.6 14.4 50 229-280 64-113 (829)
431 PF08728 CRT10: CRT10; InterP 93.8 7.1 0.00015 37.9 18.1 106 218-329 113-246 (717)
432 KOG4499 Ca2+-binding protein R 93.7 3.1 6.7E-05 33.7 16.8 91 211-309 162-263 (310)
433 PF05694 SBP56: 56kDa selenium 93.7 5 0.00011 36.1 19.0 160 214-387 137-345 (461)
434 PF10168 Nup88: Nuclear pore c 93.6 2.6 5.6E-05 41.3 14.0 87 300-387 85-182 (717)
435 KOG1916 Nuclear protein, conta 93.6 0.48 1E-05 45.8 8.8 165 269-439 151-327 (1283)
436 TIGR02276 beta_rpt_yvtn 40-res 93.4 0.66 1.4E-05 25.9 6.3 41 216-257 1-41 (42)
437 PLN00033 photosystem II stabil 93.3 6 0.00013 35.8 15.5 115 299-432 280-396 (398)
438 KOG2247 WD40 repeat-containing 93.3 0.02 4.3E-07 50.7 -0.4 142 254-429 39-182 (615)
439 KOG2280 Vacuolar assembly/sort 92.8 9.5 0.00021 36.7 16.5 173 84-282 76-249 (829)
440 PF13449 Phytase-like: Esteras 92.8 6.5 0.00014 34.7 17.9 176 250-435 20-249 (326)
441 PRK10115 protease 2; Provision 92.7 11 0.00024 37.2 26.0 60 92-158 127-191 (686)
442 PF07250 Glyoxal_oxid_N: Glyox 92.7 2.9 6.2E-05 34.7 11.1 152 231-392 48-205 (243)
443 PF14727 PHTB1_N: PTHB1 N-term 92.2 9 0.0002 34.8 20.1 26 304-329 179-204 (418)
444 TIGR03606 non_repeat_PQQ dehyd 91.8 8.6 0.00019 35.4 14.0 61 250-311 30-90 (454)
445 PRK13684 Ycf48-like protein; P 91.8 8.8 0.00019 34.0 28.1 157 249-434 172-330 (334)
446 PF14583 Pectate_lyase22: Olig 91.7 9.4 0.0002 34.0 17.0 74 209-282 38-113 (386)
447 PF07569 Hira: TUP1-like enhan 91.5 1.3 2.9E-05 36.2 8.0 75 255-331 16-97 (219)
448 PF14655 RAB3GAP2_N: Rab3 GTPa 91.5 11 0.00023 34.3 15.2 40 85-124 301-340 (415)
449 COG5276 Uncharacterized conser 91.4 7.9 0.00017 32.7 20.5 146 221-386 98-243 (370)
450 PRK13684 Ycf48-like protein; P 91.2 4.8 0.0001 35.6 11.7 108 299-430 172-283 (334)
451 PHA02790 Kelch-like protein; P 91.1 14 0.0003 34.8 17.1 100 221-331 365-472 (480)
452 KOG4659 Uncharacterized conser 91.1 21 0.00046 37.0 19.6 15 395-409 659-673 (1899)
453 KOG2247 WD40 repeat-containing 91.0 0.045 9.7E-07 48.6 -1.0 93 221-323 89-182 (615)
454 PF02333 Phytase: Phytase; In 90.7 12 0.00026 33.4 18.5 209 215-437 65-292 (381)
455 PF05935 Arylsulfotrans: Aryls 90.3 16 0.00034 34.3 14.8 154 227-392 126-309 (477)
456 PF07676 PD40: WD40-like Beta 90.0 1.2 2.6E-05 24.4 4.6 31 88-118 5-38 (39)
457 PF14761 HPS3_N: Hermansky-Pud 89.7 9.4 0.0002 30.8 16.3 155 221-383 30-213 (215)
458 KOG2377 Uncharacterized conser 89.6 13 0.00029 33.5 12.5 85 222-315 81-169 (657)
459 PF12657 TFIIIC_delta: Transcr 89.1 3.1 6.8E-05 32.6 8.0 29 301-329 87-121 (173)
460 COG3823 Glutamine cyclotransfe 88.8 11 0.00023 30.2 13.2 100 221-331 58-160 (262)
461 PF11635 Med16: Mediator compl 88.7 28 0.00061 34.9 25.4 204 219-430 62-345 (753)
462 PF05096 Glu_cyclase_2: Glutam 88.5 6.1 0.00013 33.1 9.4 114 300-438 45-160 (264)
463 COG4590 ABC-type uncharacteriz 88.5 2.9 6.3E-05 37.4 7.9 171 87-282 216-389 (733)
464 PLN00033 photosystem II stabil 88.3 20 0.00043 32.6 15.4 117 249-381 280-396 (398)
465 TIGR03606 non_repeat_PQQ dehyd 88.2 21 0.00046 32.9 13.5 32 299-330 29-60 (454)
466 PF11715 Nup160: Nucleoporin N 87.9 2.4 5.1E-05 40.6 7.9 76 259-334 156-253 (547)
467 TIGR02276 beta_rpt_yvtn 40-res 87.8 1.6 3.4E-05 24.3 4.2 29 365-393 1-31 (42)
468 PF07995 GSDH: Glucose / Sorbo 87.2 20 0.00044 31.7 19.6 61 260-324 270-330 (331)
469 PF07676 PD40: WD40-like Beta 87.0 3.1 6.8E-05 22.7 5.0 28 249-276 8-38 (39)
470 KOG1900 Nuclear pore complex, 86.8 43 0.00094 34.9 17.7 155 227-385 97-273 (1311)
471 KOG0783 Uncharacterized conser 86.7 10 0.00022 37.1 10.7 39 81-123 220-258 (1267)
472 COG5167 VID27 Protein involved 86.4 5.6 0.00012 36.3 8.5 61 260-329 572-632 (776)
473 PF13449 Phytase-like: Esteras 86.4 23 0.00049 31.3 18.5 66 249-315 146-230 (326)
474 KOG2109 WD40 repeat protein [G 86.2 8.1 0.00018 36.5 9.6 79 83-161 307-391 (788)
475 PF08801 Nucleoporin_N: Nup133 85.7 22 0.00048 32.7 12.7 32 397-436 189-220 (422)
476 KOG4460 Nuclear pore complex, 85.3 30 0.00064 32.1 12.3 79 252-330 106-199 (741)
477 COG1770 PtrB Protease II [Amin 85.2 37 0.0008 32.6 19.4 61 93-160 130-195 (682)
478 TIGR03118 PEPCTERM_chp_1 conse 84.5 25 0.00054 30.2 20.1 220 210-438 26-282 (336)
479 PF03022 MRJP: Major royal jel 84.3 26 0.00057 30.2 14.9 187 230-425 35-255 (287)
480 COG4257 Vgb Streptogramin lyas 83.6 26 0.00056 29.5 16.9 142 214-386 69-220 (353)
481 PF07250 Glyoxal_oxid_N: Glyox 83.2 26 0.00056 29.2 11.0 142 116-281 49-199 (243)
482 PF10395 Utp8: Utp8 family; I 83.1 47 0.001 32.2 14.5 33 91-123 129-161 (670)
483 COG4590 ABC-type uncharacteriz 82.1 23 0.0005 32.1 10.2 158 211-388 225-390 (733)
484 PRK13613 lipoprotein LpqB; Pro 82.0 52 0.0011 31.9 18.5 79 250-329 455-537 (599)
485 KOG3522 Predicted guanine nucl 81.6 24 0.00052 34.7 10.9 88 234-333 614-701 (925)
486 PF11715 Nup160: Nucleoporin N 81.4 5.8 0.00013 38.0 7.3 22 418-439 231-252 (547)
487 PF14781 BBS2_N: Ciliary BBSom 80.0 21 0.00046 26.3 11.4 54 221-277 66-123 (136)
488 COG1520 FOG: WD40-like repeat 79.4 48 0.001 29.9 16.1 61 221-282 70-132 (370)
489 KOG2714 SETA binding protein S 79.4 48 0.001 29.9 14.5 40 390-438 423-462 (465)
490 PF10433 MMS1_N: Mono-function 79.0 60 0.0013 30.8 23.8 110 308-433 219-340 (504)
491 PF14779 BBS1: Ciliary BBSome 79.0 25 0.00055 29.4 9.1 62 215-276 191-255 (257)
492 KOG4460 Nuclear pore complex, 77.9 60 0.0013 30.3 12.9 26 301-326 105-130 (741)
493 TIGR03548 mutarot_permut cycli 76.6 53 0.0011 28.9 15.1 66 260-332 123-197 (323)
494 PF09826 Beta_propel: Beta pro 76.6 72 0.0016 30.4 17.7 195 216-438 281-521 (521)
495 PF12768 Rax2: Cortical protei 76.1 30 0.00065 29.7 9.1 91 230-329 17-123 (281)
496 PF12341 DUF3639: Protein of u 76.1 8.1 0.00018 19.3 3.8 26 398-433 2-27 (27)
497 KOG3522 Predicted guanine nucl 75.1 31 0.00067 34.0 9.6 151 221-390 549-703 (925)
498 TIGR03074 PQQ_membr_DH membran 74.8 99 0.0021 31.2 25.4 61 221-282 262-347 (764)
499 PF15050 SCIMP: SCIMP protein 74.2 12 0.00025 26.5 5.0 19 3-21 12-30 (133)
500 smart00564 PQQ beta-propeller 73.6 10 0.00023 19.5 3.9 24 221-244 8-31 (33)
No 1
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.3e-51 Score=321.32 Aligned_cols=397 Identities=34% Similarity=0.515 Sum_probs=321.4
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHhccccccchhhcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccC
Q 013578 1 MDPVLSITVVSVVLGALIAIIFFKSYFTKRRSEIKSIAKTELEPDHQKKPTKPSQPISKKSHSKPHSHSHGDKDQNKRHH 80 (440)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (440)
||.++++.++++++|+++++.++..|..|+..+-.+.+...+. .+...+. +..+..+.+.++ ..........+.+
T Consensus 1 mdsv~l~~l~~~l~g~~~a~g~~~~y~~k~~~~~~q~a~~~p~-D~v~~~~-s~~p~kkk~hqr---~~~~k~~q~~f~H 75 (420)
T KOG2096|consen 1 IDSVSLPILIGGLVGFVTVMGVAIIYVAKKEQQGEQEAVDVPM-DEVTETI-SEEPVKKKKHQR---NDQWKAKQPTFVH 75 (420)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhhheeccCChhhhhhccCCC-CcccCcc-ccCCcchhcccc---hhhhcccCCCccc
Confidence 7889999999999999999999999987765554433322221 1111111 111222233333 2334455667888
Q ss_pred ccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecC
Q 013578 81 PLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL 160 (440)
Q Consensus 81 ~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~ 160 (440)
+..+.+|+||.+.|++++|+.||++|||++.|++||||++.+......++++...+.+ ..+.+.|.||.+.+++....
T Consensus 76 pl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d-hpT~V~FapDc~s~vv~~~~- 153 (420)
T KOG2096|consen 76 PLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD-HPTRVVFAPDCKSVVVSVKR- 153 (420)
T ss_pred chhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCC-CceEEEECCCcceEEEEEcc-
Confidence 8999999999999999999999999999999999999999987776666777666664 78999999999999988875
Q ss_pred CcceEEeeccccccccccccccCCCCCCceeeccccc---ccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCC
Q 013578 161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKV---HDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK 237 (440)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~ 237 (440)
+..+++|...+... +..+.+...|+.+.. |....+.. ...++..++++++.|..|.+|+++
T Consensus 154 -g~~l~vyk~~K~~d-------G~~~~~~v~~D~~~f~~kh~v~~i~i--------GiA~~~k~imsas~dt~i~lw~lk 217 (420)
T KOG2096|consen 154 -GNKLCVYKLVKKTD-------GSGSHHFVHIDNLEFERKHQVDIINI--------GIAGNAKYIMSASLDTKICLWDLK 217 (420)
T ss_pred -CCEEEEEEeeeccc-------CCCCcccccccccccchhcccceEEE--------eecCCceEEEEecCCCcEEEEecC
Confidence 56777776554321 333344455664333 33323321 134556699999999999999999
Q ss_pred CCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEE
Q 013578 238 TGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA 317 (440)
Q Consensus 238 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~ 317 (440)
|+.+..+...+......++||+|+++++++....|++|.+-..+++.+++...+..++||++.|..++|+|+.+.+++.
T Consensus 218 -Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv 296 (420)
T KOG2096|consen 218 -GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV 296 (420)
T ss_pred -CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEE
Confidence 9999999988888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhcccc
Q 013578 318 SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHE 397 (440)
Q Consensus 318 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~ 397 (440)
+.||+++|||++-.....+++...+..+.+.....+... +++++|+|+.||.+.+..+++|..++|+....++..|.
T Consensus 297 SkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~---RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~ 373 (420)
T KOG2096|consen 297 SKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV---RLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHS 373 (420)
T ss_pred ecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce---EEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhc
Confidence 999999999999999888888888887766666555444 79999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578 398 GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL 433 (440)
Q Consensus 398 ~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~ 433 (440)
+.|.+++|+++| ++++|+| |..+++..
T Consensus 374 ~~Is~is~~~~g--------~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 374 TTISSISYSSDG--------KYIATCG-DRYVRVIR 400 (420)
T ss_pred CceeeEEecCCC--------cEEeeec-ceeeeeec
Confidence 999999999999 8999998 88888876
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-49 Score=318.91 Aligned_cols=301 Identities=21% Similarity=0.343 Sum_probs=251.1
Q ss_pred ccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecC
Q 013578 81 PLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL 160 (440)
Q Consensus 81 ~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~ 160 (440)
..+...+.||.++|.|++|+|+|.+||||+.|.++|+||+.+... .....+|..-|.+++|+|||+.|++++.+
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp-----~~t~KgH~~WVlcvawsPDgk~iASG~~d- 178 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP-----LFTCKGHKNWVLCVAWSPDGKKIASGSKD- 178 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc-----ceeecCCccEEEEEEECCCcchhhccccC-
Confidence 345678999999999999999999999999999999999998763 35567889999999999999999999988
Q ss_pred CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc
Q 013578 161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK 240 (440)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 240 (440)
..|.+|+........ +...+|.+.+....+.+. ...|+.+ +|++++.||.|+|||+..++
T Consensus 179 --g~I~lwdpktg~~~g---------------~~l~gH~K~It~Lawep~--hl~p~~r-~las~skDg~vrIWd~~~~~ 238 (480)
T KOG0271|consen 179 --GSIRLWDPKTGQQIG---------------RALRGHKKWITALAWEPL--HLVPPCR-RLASSSKDGSVRIWDTKLGT 238 (480)
T ss_pred --CeEEEecCCCCCccc---------------ccccCcccceeEEeeccc--ccCCCcc-ceecccCCCCEEEEEccCce
Confidence 578888866543221 112233333333222221 2245666 89999999999999999999
Q ss_pred eeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEc-----------C
Q 013578 241 LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFA-----------P 309 (440)
Q Consensus 241 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----------p 309 (440)
++..+.+|..+|+|+.|--+| ++++|+.|++|++|+...+. +...+++|..+|+.++.+ |
T Consensus 239 ~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~--------~~r~lkGHahwvN~lalsTdy~LRtgaf~~ 309 (480)
T KOG0271|consen 239 CVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGK--------LCRELKGHAHWVNHLALSTDYVLRTGAFDH 309 (480)
T ss_pred EEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchh--------HHHhhcccchheeeeeccchhhhhcccccc
Confidence 999999999999999998654 89999999999999987765 788999999999999887 2
Q ss_pred CC-------------------------CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeC
Q 013578 310 NS-------------------------EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLS 364 (440)
Q Consensus 310 ~~-------------------------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 364 (440)
.+ ..|++|+.|.++.+|+-.... .++....+|...|+.+.||
T Consensus 310 t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k-------------kpi~rmtgHq~lVn~V~fS 376 (480)
T KOG0271|consen 310 TGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK-------------KPITRMTGHQALVNHVSFS 376 (480)
T ss_pred ccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc-------------cchhhhhchhhheeeEEEC
Confidence 22 359999999999999876332 1334456888889999999
Q ss_pred CCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 365 SDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 365 ~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
||++++|+++ |+.|++|+..+|+.+..+ .+|-+.|..++|+.|. ++|++|+.|.+++||++.+.+
T Consensus 377 Pd~r~IASaSFDkSVkLW~g~tGk~lasf-RGHv~~VYqvawsaDs--------RLlVS~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 377 PDGRYIASASFDKSVKLWDGRTGKFLASF-RGHVAAVYQVAWSADS--------RLLVSGSKDSTLKVWDVRTKK 442 (480)
T ss_pred CCccEEEEeecccceeeeeCCCcchhhhh-hhccceeEEEEeccCc--------cEEEEcCCCceEEEEEeeeee
Confidence 9999999987 999999999999999999 6999999999999998 999999999999999998754
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.9e-48 Score=309.41 Aligned_cols=314 Identities=23% Similarity=0.329 Sum_probs=258.8
Q ss_pred CCCCCCCCCCCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEe
Q 013578 58 SKKSHSKPHSHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRI 133 (440)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~ 133 (440)
+...++.-...++++.|.+.|+|+. ++.+.+||...|.|++|+|||+.||+|+.||+|++||..+++. ..+.
T Consensus 120 ~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~----~g~~ 195 (480)
T KOG0271|consen 120 SVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ----IGRA 195 (480)
T ss_pred EEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc----cccc
Confidence 3344444455688899999999976 5778999999999999999999999999999999999988764 4566
Q ss_pred cCCCCCCCceEEEcc-----CCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeec
Q 013578 134 NLPPGGPPTAVAFAD-----NATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFG 208 (440)
Q Consensus 134 ~~~~~~~v~~v~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (440)
..+|...|++++|.| ..+++++++.| ..+.+|+.... .....+..+..
T Consensus 196 l~gH~K~It~Lawep~hl~p~~r~las~skD---g~vrIWd~~~~------------------------~~~~~lsgHT~ 248 (480)
T KOG0271|consen 196 LRGHKKWITALAWEPLHLVPPCRRLASSSKD---GSVRIWDTKLG------------------------TCVRTLSGHTA 248 (480)
T ss_pred ccCcccceeEEeecccccCCCccceecccCC---CCEEEEEccCc------------------------eEEEEeccCcc
Confidence 778999999999975 56788888877 45566655432 11122222222
Q ss_pred ccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEec-----------CCC----------------
Q 013578 209 ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAIS-----------PNG---------------- 261 (440)
Q Consensus 209 ~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s-----------~~~---------------- 261 (440)
+..+.-. .|..++++++.|++|++|+...|.+.+.+.+|..-|+.++.+ |.+
T Consensus 249 ~VTCvrw-GG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r 327 (480)
T KOG0271|consen 249 SVTCVRW-GGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALER 327 (480)
T ss_pred ceEEEEE-cCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHH
Confidence 2222212 234499999999999999999999999999999888888776 223
Q ss_pred ---------CeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccc
Q 013578 262 ---------RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRY 332 (440)
Q Consensus 262 ---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~ 332 (440)
..|++|+.|.++.+|+-...+ +++..+.+|+.-|+.+.|+||++++|+++.|..|++||.++++
T Consensus 328 Y~~~~~~~~erlVSgsDd~tlflW~p~~~k-------kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk 400 (480)
T KOG0271|consen 328 YEAVLKDSGERLVSGSDDFTLFLWNPFKSK-------KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGK 400 (480)
T ss_pred HHHhhccCcceeEEecCCceEEEecccccc-------cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcc
Confidence 359999999999999975443 3677889999999999999999999999999999999999876
Q ss_pred cccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCC
Q 013578 333 HLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411 (440)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 411 (440)
.+ ....+|...|+.++|+.|.++|++|+ |.++++|++++.++...+ .+|.+.|.++.|+|||
T Consensus 401 ~l--------------asfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DL-pGh~DEVf~vDwspDG-- 463 (480)
T KOG0271|consen 401 FL--------------ASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDL-PGHADEVFAVDWSPDG-- 463 (480)
T ss_pred hh--------------hhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccC-CCCCceEEEEEecCCC--
Confidence 43 33457888899999999999999987 999999999999999999 5999999999999999
Q ss_pred CCCCcceEEEEeeCCCeEEEEe
Q 013578 412 MGNQQVSVLATSSVDKKVKLWL 433 (440)
Q Consensus 412 ~~~~~~~~l~t~~~Dg~i~vw~ 433 (440)
..+++|+.|..+++|.
T Consensus 464 ------~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 464 ------QRVASGGKDKVLRLWR 479 (480)
T ss_pred ------ceeecCCCceEEEeec
Confidence 8999999999999995
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.2e-45 Score=287.26 Aligned_cols=293 Identities=19% Similarity=0.301 Sum_probs=238.2
Q ss_pred cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC 163 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~ 163 (440)
.++|+||.+.|.++.|++|.++|+++|.||.+.|||.-+.... ....-...-|..++|+|.+++++.++.|.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~-----haipl~s~WVMtCA~sPSg~~VAcGGLdN--- 119 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV-----HAIPLPSSWVMTCAYSPSGNFVACGGLDN--- 119 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce-----eEEecCceeEEEEEECCCCCeEEecCcCc---
Confidence 4789999999999999999999999999999999998776532 12222336799999999999999998773
Q ss_pred eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeeccc-ccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578 164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGAS-ATYGTADGSTIIASCSEGTDISIWHGKTGKLL 242 (440)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 242 (440)
...+|+....... +. ....+.+..+.+.. ++.+..|+ .+++++.|.+..+||+++++.+
T Consensus 120 ~Csiy~ls~~d~~----------g~--------~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~~~ 179 (343)
T KOG0286|consen 120 KCSIYPLSTRDAE----------GN--------VRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQQT 179 (343)
T ss_pred eeEEEeccccccc----------cc--------ceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccceEE
Confidence 3333333211000 00 00111122222222 22223333 7999999999999999999999
Q ss_pred eeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC
Q 013578 243 GNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG 321 (440)
Q Consensus 243 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg 321 (440)
..+.+|.+.|.++.++| +++.|++|+.|+..++||++.+. +.+.|.+|.+.|+++.|.|+|.-|++|+.|+
T Consensus 180 ~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~--------c~qtF~ghesDINsv~ffP~G~afatGSDD~ 251 (343)
T KOG0286|consen 180 QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ--------CVQTFEGHESDINSVRFFPSGDAFATGSDDA 251 (343)
T ss_pred EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc--------eeEeecccccccceEEEccCCCeeeecCCCc
Confidence 99999999999999999 99999999999999999998876 8999999999999999999999999999999
Q ss_pred cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCe
Q 013578 322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEI 400 (440)
Q Consensus 322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v 400 (440)
++++||++....+. .+........|++++||..|++|.+|. |.++.+||.-.++.+..+ .+|+..|
T Consensus 252 tcRlyDlRaD~~~a------------~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L-~GHeNRv 318 (343)
T KOG0286|consen 252 TCRLYDLRADQELA------------VYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL-AGHENRV 318 (343)
T ss_pred eeEEEeecCCcEEe------------eeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEe-eccCCee
Confidence 99999999754432 233444556799999999999998865 899999999999999998 5999999
Q ss_pred EEEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578 401 TCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL 433 (440)
Q Consensus 401 ~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~ 433 (440)
.++..+||| .-|+||+.|.++|||.
T Consensus 319 Scl~~s~DG--------~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 319 SCLGVSPDG--------MAVATGSWDSTLRIWA 343 (343)
T ss_pred EEEEECCCC--------cEEEecchhHheeecC
Confidence 999999999 8999999999999994
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-45 Score=300.37 Aligned_cols=283 Identities=22% Similarity=0.352 Sum_probs=244.1
Q ss_pred cccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccC--CCeEEEEeecCCcceE
Q 013578 88 KGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADN--ATSIVVATHNLSGCSL 165 (440)
Q Consensus 88 ~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~--~~~l~~~~~~~~~~~~ 165 (440)
.|-+.+|..+.||.|++.|||||.+|.++||+..+.. ....+.+|...+.++.|+|. +..+++++.|+ .+
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~-----~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dg---tv 243 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN-----LLQTLRGHTSRVGAAVFHPVDSDLNLATASADG---TV 243 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc-----eeEEEeccccceeeEEEccCCCccceeeeccCC---ce
Confidence 3568899999999999999999999999999998763 45677899999999999997 56889998884 45
Q ss_pred EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeee
Q 013578 166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNV 245 (440)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 245 (440)
.+|+....... ....+|..++. .+.|.|+|+ +|.+++.|.+-++||++++..+...
T Consensus 244 klw~~~~e~~l----------------~~l~gH~~RVs-------~VafHPsG~-~L~TasfD~tWRlWD~~tk~ElL~Q 299 (459)
T KOG0272|consen 244 KLWKLSQETPL----------------QDLEGHLARVS-------RVAFHPSGK-FLGTASFDSTWRLWDLETKSELLLQ 299 (459)
T ss_pred eeeccCCCcch----------------hhhhcchhhhe-------eeeecCCCc-eeeecccccchhhcccccchhhHhh
Confidence 55554432110 11122322222 334589999 9999999999999999999999999
Q ss_pred eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEE
Q 013578 246 DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRV 325 (440)
Q Consensus 246 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~i 325 (440)
.+|...|.+++|++||.++++|+.|..-+|||++++. ++..+.+|..+|.+++|+|+|..|||||.|++++|
T Consensus 300 EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr--------~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kV 371 (459)
T KOG0272|consen 300 EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR--------CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKV 371 (459)
T ss_pred cccccccceeEecCCCceeeccCccchhheeecccCc--------EEEEecccccceeeEeECCCceEEeecCCCCcEEE
Confidence 9999999999999999999999999999999999987 89999999999999999999999999999999999
Q ss_pred EecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC-CCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEE
Q 013578 326 WNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS-DGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCM 403 (440)
Q Consensus 326 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v 403 (440)
||++...+ .+...+|..-|+.+.|+| .|.+|++++ |+++++|...++.++..+ .||++.|.++
T Consensus 372 WDLR~r~~--------------ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL-aGHe~kV~s~ 436 (459)
T KOG0272|consen 372 WDLRMRSE--------------LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL-AGHEGKVISL 436 (459)
T ss_pred eeeccccc--------------ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh-cCCccceEEE
Confidence 99996644 234457777899999999 688898876 999999999999999999 5999999999
Q ss_pred EecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578 404 AWAPKTIPMGNQQVSVLATSSVDKKVKLWL 433 (440)
Q Consensus 404 ~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~ 433 (440)
+.++++ ..++|++.|.++++|.
T Consensus 437 Dis~d~--------~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 437 DISPDS--------QAIATSSFDRTIKLWR 458 (459)
T ss_pred EeccCC--------ceEEEeccCceeeecc
Confidence 999998 8999999999999996
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-40 Score=255.79 Aligned_cols=253 Identities=21% Similarity=0.270 Sum_probs=216.0
Q ss_pred cccccccCcceeEEEEccC-CCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 84 VNTLKGHGDSVTGLCFSSD-GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~d-g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
..+|++|.+.|+.++..+. ...+++++.|.++.+|++.......-...+.+.+|...|..+..+++++
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~----------- 76 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN----------- 76 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc-----------
Confidence 4579999999999999986 5688999999999999998765544445666777888888888777654
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL 242 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 242 (440)
++++++.|+++++||+.+++..
T Consensus 77 ----------------------------------------------------------~alS~swD~~lrlWDl~~g~~t 98 (315)
T KOG0279|consen 77 ----------------------------------------------------------FALSASWDGTLRLWDLATGEST 98 (315)
T ss_pred ----------------------------------------------------------eEEeccccceEEEEEecCCcEE
Confidence 7889999999999999999999
Q ss_pred eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec--cccceEEEEEcCC--CCEEEEEe
Q 013578 243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG--HKSAVTWLCFAPN--SEQIITAS 318 (440)
Q Consensus 243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~--~~~l~s~~ 318 (440)
+.+.+|...|.+++|++|.+.+++|+.|.+|++|++... +..++.. +.++|.|+.|+|+ ..+|++++
T Consensus 99 ~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~---------ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s 169 (315)
T KOG0279|consen 99 RRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV---------CKYTIHEDSHREWVSCVRFSPNESNPIIVSAS 169 (315)
T ss_pred EEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc---------EEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc
Confidence 999999999999999999999999999999999998543 2333333 3789999999998 67899999
Q ss_pred CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhcccc
Q 013578 319 KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHE 397 (440)
Q Consensus 319 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~ 397 (440)
.|++|++||+++.+.. ....+|...++.+++||||.+.++|. ||.+.+||+..++.+..+. |.
T Consensus 170 ~DktvKvWnl~~~~l~--------------~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~--a~ 233 (315)
T KOG0279|consen 170 WDKTVKVWNLRNCQLR--------------TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE--AF 233 (315)
T ss_pred CCceEEEEccCCcchh--------------hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc--CC
Confidence 9999999999965432 23446778899999999999999976 9999999999999998874 99
Q ss_pred CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 398 GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 398 ~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
..|.+++|+|+ ++.+.+..+..|+|||+++..+
T Consensus 234 ~~v~sl~fspn---------rywL~~at~~sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 234 DIVNSLCFSPN---------RYWLCAATATSIKIWDLESKAV 266 (315)
T ss_pred CeEeeEEecCC---------ceeEeeccCCceEEEeccchhh
Confidence 99999999999 5666667778899999988653
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-40 Score=255.35 Aligned_cols=251 Identities=22% Similarity=0.338 Sum_probs=214.9
Q ss_pred CccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeec
Q 013578 80 HPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHN 159 (440)
Q Consensus 80 ~~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~ 159 (440)
...+++.|.||...|..+..++||++.+++|.|+++|+||+.+++ ..+.+.+|...|.+++|++|.+
T Consensus 52 ~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~-----~t~~f~GH~~dVlsva~s~dn~-------- 118 (315)
T KOG0279|consen 52 YGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE-----STRRFVGHTKDVLSVAFSTDNR-------- 118 (315)
T ss_pred cCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCc-----EEEEEEecCCceEEEEecCCCc--------
Confidence 345688999999999999999999999999999999999999874 3566778999999999998765
Q ss_pred CCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC
Q 013578 160 LSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG 239 (440)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 239 (440)
.+++|+.|.+|++|+.. +
T Consensus 119 -------------------------------------------------------------qivSGSrDkTiklwnt~-g 136 (315)
T KOG0279|consen 119 -------------------------------------------------------------QIVSGSRDKTIKLWNTL-G 136 (315)
T ss_pred -------------------------------------------------------------eeecCCCcceeeeeeec-c
Confidence 78899999999999987 5
Q ss_pred ceeeeeeCC--CCcccEEEecCC--CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEE
Q 013578 240 KLLGNVDTN--QLKNNMAAISPN--GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315 (440)
Q Consensus 240 ~~~~~~~~~--~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 315 (440)
.+..++..+ ..-|.|+.|+|+ ..+|++++.|+++++||++.-+ ....+.+|++.++.+++||||...+
T Consensus 137 ~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~--------l~~~~~gh~~~v~t~~vSpDGslca 208 (315)
T KOG0279|consen 137 VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ--------LRTTFIGHSGYVNTVTVSPDGSLCA 208 (315)
T ss_pred cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc--------hhhccccccccEEEEEECCCCCEEe
Confidence 555555433 677999999998 6899999999999999997655 6778899999999999999999999
Q ss_pred EEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhcc
Q 013578 316 TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKA 395 (440)
Q Consensus 316 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~ 395 (440)
+|+.||.+.+||++.++++.. .++...|.+++|+|+..+|+.+.+..|+|||++++.++..+...
T Consensus 209 sGgkdg~~~LwdL~~~k~lys---------------l~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d 273 (315)
T KOG0279|consen 209 SGGKDGEAMLWDLNEGKNLYS---------------LEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLD 273 (315)
T ss_pred cCCCCceEEEEEccCCceeEe---------------ccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhcccc
Confidence 999999999999997765422 23445689999999999999999999999999999988776421
Q ss_pred c--------cCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 396 H--------EGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 396 h--------~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
- .-...+++|+++| ..|++|-.|+.|++|.+..
T Consensus 274 ~~g~s~~~~~~~clslaws~dG--------~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 274 GIGPSSKAGDPICLSLAWSADG--------QTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred ccccccccCCcEEEEEEEcCCC--------cEEEeeecCCcEEEEEeec
Confidence 1 2245778999999 8999999999999998753
No 8
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.1e-38 Score=244.28 Aligned_cols=295 Identities=19% Similarity=0.319 Sum_probs=228.5
Q ss_pred ccccccccCcceeEEEEccC-CCEEEEeeCCCcEEEEecCCCCCcceeeE-EecCCCCCCCceEEEccCCCeEEEEeecC
Q 013578 83 DVNTLKGHGDSVTGLCFSSD-GKCLATACADGVIRVHKLDDASSKSFKFL-RINLPPGGPPTAVAFADNATSIVVATHNL 160 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~d-g~~l~t~s~dg~v~vW~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~l~~~~~~~ 160 (440)
.++.++||.+.|+.++|+|- |..|||||.|+.||+|+...+. .+.+. .....|...|++++|+|.|++|++++.|
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD- 82 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--SWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD- 82 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--cEEEEEeccccchheeeeeeecCCCcEEEEeecc-
Confidence 46789999999999999997 8899999999999999998522 22222 2334688999999999999999999998
Q ss_pred CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC-
Q 013578 161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG- 239 (440)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~- 239 (440)
....+|....... .......+|.. ...++.++++|. +|++|+.|+.|.+|....+
T Consensus 83 --~t~~Iw~k~~~ef--------------ecv~~lEGHEn-------EVK~Vaws~sG~-~LATCSRDKSVWiWe~dedd 138 (312)
T KOG0645|consen 83 --ATVVIWKKEDGEF--------------ECVATLEGHEN-------EVKCVAWSASGN-YLATCSRDKSVWIWEIDEDD 138 (312)
T ss_pred --ceEEEeecCCCce--------------eEEeeeecccc-------ceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCC
Confidence 3444444332100 00111122222 233455688888 9999999999999998744
Q ss_pred --ceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEE
Q 013578 240 --KLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA 317 (440)
Q Consensus 240 --~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~ 317 (440)
++...++.|...|..+.|+|...+|++++.|.+|++|+-... ..+.++.++.+|...|.+++|+|.|..|+++
T Consensus 139 Efec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d-----ddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~ 213 (312)
T KOG0645|consen 139 EFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD-----DDWECVQTLDGHENTVWSLAFDNIGSRLVSC 213 (312)
T ss_pred cEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCC-----CCeeEEEEecCccceEEEEEecCCCceEEEe
Confidence 567888999999999999999999999999999999986532 3456889999999999999999999999999
Q ss_pred eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCc------cchhh
Q 013578 318 SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETG------KVLDT 391 (440)
Q Consensus 318 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~------~~~~~ 391 (440)
+.|++|+||...+.- ..-|...++.++|. +|.+-.+|.|+.|++|..... +.+..
T Consensus 214 sdD~tv~Iw~~~~~~------------------~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~ 274 (312)
T KOG0645|consen 214 SDDGTVSIWRLYTDL------------------SGMHSRALYDVPWD-NGVIASGGGDDAIRLFKESDSPDEPSWNLLAK 274 (312)
T ss_pred cCCcceEeeeeccCc------------------chhcccceEeeeec-ccceEeccCCCEEEEEEecCCCCCchHHHHHh
Confidence 999999999865221 11234457789998 554444466999999976543 33444
Q ss_pred hhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 392 AEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 392 ~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
....|...|+++.|.|... .+|++|+.||.|++|.+.
T Consensus 275 ~~~aHe~dVNsV~w~p~~~-------~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 275 KEGAHEVDVNSVQWNPKVS-------NRLASGGDDGIVNFWELE 311 (312)
T ss_pred hhcccccccceEEEcCCCC-------CceeecCCCceEEEEEec
Confidence 5578999999999999531 799999999999999875
No 9
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.9e-40 Score=255.48 Aligned_cols=299 Identities=15% Similarity=0.283 Sum_probs=239.2
Q ss_pred cccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578 82 LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS 161 (440)
Q Consensus 82 ~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~ 161 (440)
.++..+.||.+.|+.+.|+|+|.+||||+.|..|.+|++...... .-...+|.+.|..+.|..|+..+++++.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN----~~~lkgHsgAVM~l~~~~d~s~i~S~gtD-- 111 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCEN----FWVLKGHSGAVMELHGMRDGSHILSCGTD-- 111 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccc----eeeeccccceeEeeeeccCCCEEEEecCC--
Confidence 356778999999999999999999999999999999998755433 22334889999999999999999999988
Q ss_pred cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578 162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL 241 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 241 (440)
..+..|+.+........+....+ +.. +....-|..++.+++.|+++++||+++.+.
T Consensus 112 -k~v~~wD~~tG~~~rk~k~h~~~-----------------vNs------~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~ 167 (338)
T KOG0265|consen 112 -KTVRGWDAETGKRIRKHKGHTSF-----------------VNS------LDPSRRGPQLVCSGSDDGTLKLWDIRKKEA 167 (338)
T ss_pred -ceEEEEecccceeeehhccccce-----------------eee------cCccccCCeEEEecCCCceEEEEeecccch
Confidence 67888887766433222211111 110 111334566899999999999999999988
Q ss_pred eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC
Q 013578 242 LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG 321 (440)
Q Consensus 242 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg 321 (440)
++++.. ...++++.|..++..+.+|+-|+.|++||++... ..+.+.||.++|+++..+|+|.++.+-+.|.
T Consensus 168 ~~t~~~-kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d--------~~~~lsGh~DtIt~lsls~~gs~llsnsMd~ 238 (338)
T KOG0265|consen 168 IKTFEN-KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND--------GLYTLSGHADTITGLSLSRYGSFLLSNSMDN 238 (338)
T ss_pred hhcccc-ceeEEEEEecccccceeeccccCceeeeccccCc--------ceEEeecccCceeeEEeccCCCccccccccc
Confidence 887754 5578999999999999999999999999998776 7889999999999999999999999999999
Q ss_pred cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCe
Q 013578 322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEI 400 (440)
Q Consensus 322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v 400 (440)
++++||++....- .+++..+....+ .-......++|+|+++.+.+|+ |..+++||..+...+..+ .+|.+.|
T Consensus 239 tvrvwd~rp~~p~---~R~v~if~g~~h---nfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl-pGh~gsv 311 (338)
T KOG0265|consen 239 TVRVWDVRPFAPS---QRCVKIFQGHIH---NFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL-PGHYGSV 311 (338)
T ss_pred eEEEEEecccCCC---CceEEEeecchh---hhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc-CCcceeE
Confidence 9999999843211 111222221122 2223345789999999999876 999999999999999998 5999999
Q ss_pred EEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578 401 TCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA 434 (440)
Q Consensus 401 ~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~ 434 (440)
++++|+|.. .+|.+++.|.+|++=.+
T Consensus 312 n~~~Fhp~e--------~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 312 NEVDFHPTE--------PIILSCSSDKTIYLGEI 337 (338)
T ss_pred EEeeecCCC--------cEEEEeccCceeEeecc
Confidence 999999998 89999999999987443
No 10
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.9e-40 Score=289.63 Aligned_cols=258 Identities=24% Similarity=0.384 Sum_probs=217.3
Q ss_pred CccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcce--------------------------eeEEe
Q 013578 80 HPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSF--------------------------KFLRI 133 (440)
Q Consensus 80 ~~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~--------------------------~~~~~ 133 (440)
...++.++..-...++|..|++|++.||.|-.|..|++|.+........ ...+.
T Consensus 367 pSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~ 446 (707)
T KOG0263|consen 367 PSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT 446 (707)
T ss_pred CcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE
Confidence 3345556655567899999999999999999999999999874321100 00111
Q ss_pred cCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccc
Q 013578 134 NLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATY 213 (440)
Q Consensus 134 ~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (440)
..+|.++|..+.
T Consensus 447 L~GH~GPVyg~s-------------------------------------------------------------------- 458 (707)
T KOG0263|consen 447 LYGHSGPVYGCS-------------------------------------------------------------------- 458 (707)
T ss_pred eecCCCceeeee--------------------------------------------------------------------
Confidence 222333333333
Q ss_pred cCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeee
Q 013578 214 GTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM 293 (440)
Q Consensus 214 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 293 (440)
++|+.+ +|++|++|++||+|.+.+..++-.+.+|..+|..+.|+|.|-+||+++.|++-++|...... +++
T Consensus 459 FsPd~r-fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~--------PlR 529 (707)
T KOG0263|consen 459 FSPDRR-FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK--------PLR 529 (707)
T ss_pred eccccc-ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC--------chh
Confidence 355555 89999999999999999999999999999999999999999999999999999999987655 788
Q ss_pred eeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe
Q 013578 294 QLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT 373 (440)
Q Consensus 294 ~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 373 (440)
.+.+|.+.|.|+.|+|++.|+++||.|.+||+||+.++..+ +. ..||..+|.+++|||+|++|++|
T Consensus 530 ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~V-------Ri-------F~GH~~~V~al~~Sp~Gr~LaSg 595 (707)
T KOG0263|consen 530 IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSV-------RI-------FTGHKGPVTALAFSPCGRYLASG 595 (707)
T ss_pred hhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEE-------EE-------ecCCCCceEEEEEcCCCceEeec
Confidence 89999999999999999999999999999999999987543 22 25788999999999999999998
Q ss_pred c-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 374 H-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 374 ~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
+ |+.|.+||+.+++++..+ .+|.+.|.++.|+.+| ..||+||.|.+|++||+...
T Consensus 596 ~ed~~I~iWDl~~~~~v~~l-~~Ht~ti~SlsFS~dg--------~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 596 DEDGLIKIWDLANGSLVKQL-KGHTGTIYSLSFSRDG--------NVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ccCCcEEEEEcCCCcchhhh-hcccCceeEEEEecCC--------CEEEecCCCCeEEEEEchhh
Confidence 7 899999999999999999 5999999999999999 89999999999999998653
No 11
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.5e-40 Score=270.13 Aligned_cols=262 Identities=22% Similarity=0.276 Sum_probs=223.3
Q ss_pred CCCCCCCCCCcccCcc----ccccccccCcceeEEEEccC--CCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCC
Q 013578 67 SHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSD--GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGP 140 (440)
Q Consensus 67 ~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~d--g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~ 140 (440)
..++++-++..+.|.. .+++|.||++.|.++.|+|. +..||||+.||++++|++++.. .+....+|...
T Consensus 189 ~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~-----~l~~l~gH~~R 263 (459)
T KOG0272|consen 189 HLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET-----PLQDLEGHLAR 263 (459)
T ss_pred eEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc-----chhhhhcchhh
Confidence 3466777788888865 37889999999999999996 6799999999999999998764 34566788899
Q ss_pred CceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCe
Q 013578 141 PTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGST 220 (440)
Q Consensus 141 v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (440)
|..++|+|+|++|.+++.| ..+.+|+....... -...+|...+ ..+.+.+||.
T Consensus 264 Vs~VafHPsG~~L~TasfD---~tWRlWD~~tk~El----------------L~QEGHs~~v-------~~iaf~~DGS- 316 (459)
T KOG0272|consen 264 VSRVAFHPSGKFLGTASFD---STWRLWDLETKSEL----------------LLQEGHSKGV-------FSIAFQPDGS- 316 (459)
T ss_pred heeeeecCCCceeeecccc---cchhhcccccchhh----------------Hhhccccccc-------ceeEecCCCc-
Confidence 9999999999999999998 67778877654211 1122333333 3344588999
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~ 300 (440)
++++|+.|..-+|||++++.++..+.+|..+|..+.|+|+|..||+|+.|++++|||++... .+..+.+|..
T Consensus 317 L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~--------~ly~ipAH~n 388 (459)
T KOG0272|consen 317 LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS--------ELYTIPAHSN 388 (459)
T ss_pred eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccc--------cceecccccc
Confidence 99999999999999999999999999999999999999999999999999999999998776 6888999999
Q ss_pred ceEEEEEcC-CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEE
Q 013578 301 AVTWLCFAP-NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTL 378 (440)
Q Consensus 301 ~v~~~~~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i 378 (440)
-|+.+.|+| .|.+|+|++.|++++||..++..++ ....||...|.++.+++|+.++++++ |.++
T Consensus 389 lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~--------------ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~ 454 (459)
T KOG0272|consen 389 LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL--------------KSLAGHEGKVISLDISPDSQAIATSSFDRTI 454 (459)
T ss_pred hhhheEecccCCeEEEEcccCcceeeecCCCcccc--------------hhhcCCccceEEEEeccCCceEEEeccCcee
Confidence 999999999 7789999999999999998866543 34568889999999999999999876 9999
Q ss_pred EEEE
Q 013578 379 QWLS 382 (440)
Q Consensus 379 ~i~d 382 (440)
++|.
T Consensus 455 KLW~ 458 (459)
T KOG0272|consen 455 KLWR 458 (459)
T ss_pred eecc
Confidence 9995
No 12
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-39 Score=261.37 Aligned_cols=292 Identities=22% Similarity=0.354 Sum_probs=247.3
Q ss_pred ccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecC
Q 013578 81 PLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL 160 (440)
Q Consensus 81 ~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~ 160 (440)
+.+.+.+.||..+|+.+-|+|+-..+++++.|++|++||..+++. .....+|...+.+++|+..|+++++++.|.
T Consensus 98 p~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~-----e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl 172 (406)
T KOG0295|consen 98 PNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL-----ERSLRGHTDSVFDISFDASGKYLATCSSDL 172 (406)
T ss_pred CCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh-----hhhhhccccceeEEEEecCccEEEecCCcc
Confidence 345678899999999999999999999999999999999998874 456678888999999999999999999884
Q ss_pred CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc
Q 013578 161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK 240 (440)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 240 (440)
. +..|+........ +.........+.+++.|.|. ++++++.|.+|+.|++.++.
T Consensus 173 ~---~~LWd~~~~~~c~----------------------ks~~gh~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~ 226 (406)
T KOG0295|consen 173 S---AKLWDFDTFFRCI----------------------KSLIGHEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGY 226 (406)
T ss_pred c---hhheeHHHHHHHH----------------------HHhcCcccceeeEEEEecCC-eeeecccccceeEEecccce
Confidence 3 5555544321000 00011111233344566776 99999999999999999999
Q ss_pred eeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCC----------
Q 013578 241 LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPN---------- 310 (440)
Q Consensus 241 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~---------- 310 (440)
++.++.+|..-+..++.+.||.++++++.|.++++|-+.+.. +...++.|..+|.+++|.|.
T Consensus 227 cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~--------~k~~lR~hEh~vEci~wap~~~~~~i~~at 298 (406)
T KOG0295|consen 227 CVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ--------CKAELREHEHPVECIAWAPESSYPSISEAT 298 (406)
T ss_pred eEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccch--------hhhhhhccccceEEEEecccccCcchhhcc
Confidence 999999999999999999999999999999999999987765 67788999999999999773
Q ss_pred -----CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcC
Q 013578 311 -----SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVE 384 (440)
Q Consensus 311 -----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~ 384 (440)
+.++.+++.|++|++||+.++.++ ....+|...|..++|+|.|+||+++ +|+++++||++
T Consensus 299 ~~~~~~~~l~s~SrDktIk~wdv~tg~cL--------------~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~ 364 (406)
T KOG0295|consen 299 GSTNGGQVLGSGSRDKTIKIWDVSTGMCL--------------FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK 364 (406)
T ss_pred CCCCCccEEEeecccceEEEEeccCCeEE--------------EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEec
Confidence 258999999999999999988764 4456888999999999999999986 58999999999
Q ss_pred CccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578 385 TGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA 434 (440)
Q Consensus 385 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~ 434 (440)
++++...++ +|..-|++++|+.+. .+++||+-|.++++|..
T Consensus 365 ~~~cmk~~~-ah~hfvt~lDfh~~~--------p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 365 NLQCMKTLE-AHEHFVTSLDFHKTA--------PYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cceeeeccC-CCcceeEEEecCCCC--------ceEEeccccceeeeeec
Confidence 999999995 999999999999998 79999999999999974
No 13
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.5e-38 Score=240.18 Aligned_cols=278 Identities=19% Similarity=0.234 Sum_probs=219.1
Q ss_pred CEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccC
Q 013578 104 KCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQS 183 (440)
Q Consensus 104 ~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (440)
-+|+|+|.|-+||+|...++. +.+.....++.|..+...|+++.|++++.. .+++++.....
T Consensus 11 viLvsA~YDhTIRfWqa~tG~-----C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q----hvRlyD~~S~n--------- 72 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGI-----CSRTIQHPDSQVNRLEITPDKKDLAAAGNQ----HVRLYDLNSNN--------- 72 (311)
T ss_pred eEEEeccCcceeeeeehhcCe-----EEEEEecCccceeeEEEcCCcchhhhccCC----eeEEEEccCCC---------
Confidence 489999999999999999875 455555667889999999999999998865 77777765542
Q ss_pred CCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCe
Q 013578 184 KLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRF 263 (440)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 263 (440)
+.+...++.+... +. .+-|..+|+ .+++|++||+++|||++...+.+.++. ..+|+++..+|+...
T Consensus 73 --p~Pv~t~e~h~kN---Vt-------aVgF~~dgr-WMyTgseDgt~kIWdlR~~~~qR~~~~-~spVn~vvlhpnQte 138 (311)
T KOG0315|consen 73 --PNPVATFEGHTKN---VT-------AVGFQCDGR-WMYTGSEDGTVKIWDLRSLSCQRNYQH-NSPVNTVVLHPNQTE 138 (311)
T ss_pred --CCceeEEeccCCc---eE-------EEEEeecCe-EEEecCCCceEEEEeccCcccchhccC-CCCcceEEecCCcce
Confidence 1122222222111 11 122355777 999999999999999999777666664 589999999999999
Q ss_pred EEEEecCCCEEEEEeEecCCCceeeeeeeeee-eccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccc
Q 013578 264 LAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL-KGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLK 342 (440)
Q Consensus 264 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 342 (440)
|++|..+|.|++||+.... +...+ .....+|.++...|||.+|+.+...|..++|++-+....
T Consensus 139 Lis~dqsg~irvWDl~~~~--------c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~-------- 202 (311)
T KOG0315|consen 139 LISGDQSGNIRVWDLGENS--------CTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA-------- 202 (311)
T ss_pred EEeecCCCcEEEEEccCCc--------cccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcc--------
Confidence 9999999999999997653 22222 223468999999999999999999999999999763211
Q ss_pred cccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCc-cchhhhhccccCCeEEEEecCCCCCCCCCcceEE
Q 013578 343 VLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETG-KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVL 420 (440)
Q Consensus 343 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l 420 (440)
..-.|......|...+..+.+|||+++||+++ |.+++||+.++. +....+ .+|..-+++++|+.|+ .||
T Consensus 203 s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l-~gh~rWvWdc~FS~dg--------~Yl 273 (311)
T KOG0315|consen 203 SELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVL-TGHQRWVWDCAFSADG--------EYL 273 (311)
T ss_pred ccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEe-ecCCceEEeeeeccCc--------cEE
Confidence 11124455667778899999999999999865 999999999988 444445 6899999999999999 999
Q ss_pred EEeeCCCeEEEEeCCCCC
Q 013578 421 ATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 421 ~t~~~Dg~i~vw~~~~~~ 438 (440)
+||+.|+.+++|+++.++
T Consensus 274 vTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 274 VTASSDHTARLWDLSAGK 291 (311)
T ss_pred EecCCCCceeecccccCc
Confidence 999999999999999886
No 14
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.3e-38 Score=254.87 Aligned_cols=251 Identities=18% Similarity=0.281 Sum_probs=226.6
Q ss_pred cccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578 82 LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS 161 (440)
Q Consensus 82 ~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~ 161 (440)
...+.+.||.+.|.|+++.|.+.+|+||+.|++++|||+.++. +.....+|...|..+++++...
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~-----LkltltGhi~~vr~vavS~rHp---------- 206 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ-----LKLTLTGHIETVRGVAVSKRHP---------- 206 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe-----EEEeecchhheeeeeeecccCc----------
Confidence 4577899999999999999999999999999999999999885 3345566888889999886533
Q ss_pred cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578 162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL 241 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 241 (440)
++++++.|+.|+.||++..+.
T Consensus 207 -----------------------------------------------------------YlFs~gedk~VKCwDLe~nkv 227 (460)
T KOG0285|consen 207 -----------------------------------------------------------YLFSAGEDKQVKCWDLEYNKV 227 (460)
T ss_pred -----------------------------------------------------------eEEEecCCCeeEEEechhhhh
Confidence 789999999999999999999
Q ss_pred eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC
Q 013578 242 LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG 321 (440)
Q Consensus 242 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg 321 (440)
++.+.+|-..|.|+..+|.-..|++|+.|..+++||+++.. .+..+.||..+|.++.+.|-...+++||.|+
T Consensus 228 IR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~--------~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~ 299 (460)
T KOG0285|consen 228 IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA--------SVHVLSGHTNPVASVMCQPTDPQVITGSHDS 299 (460)
T ss_pred HHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc--------eEEEecCCCCcceeEEeecCCCceEEecCCc
Confidence 99999999999999999999999999999999999998876 7999999999999999999888999999999
Q ss_pred cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeE
Q 013578 322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEIT 401 (440)
Q Consensus 322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~ 401 (440)
+|++||++.++.. .....|...+.+++.+|....+|+++-..|+-|++..|..+..+ .+|.+-|+
T Consensus 300 tvrlWDl~agkt~--------------~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nl-sgh~~iin 364 (460)
T KOG0285|consen 300 TVRLWDLRAGKTM--------------ITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNL-SGHNAIIN 364 (460)
T ss_pred eEEEeeeccCcee--------------EeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhcc-ccccceee
Confidence 9999999976432 23345677799999999999999999999999999999999997 69999999
Q ss_pred EEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 402 CMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 402 ~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
+++.+.|+ ++++|++.|.+..||..++-
T Consensus 365 tl~~nsD~---------v~~~G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 365 TLSVNSDG---------VLVSGGDNGSIMFWDWKSGH 392 (460)
T ss_pred eeeeccCc---------eEEEcCCceEEEEEecCcCc
Confidence 99999995 99999999999999998763
No 15
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.5e-39 Score=262.28 Aligned_cols=284 Identities=20% Similarity=0.288 Sum_probs=237.9
Q ss_pred CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecc
Q 013578 91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGE 170 (440)
Q Consensus 91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~ 170 (440)
.-.|..+.|.|+|+.|++|+..|.+.+|+..... +-.+...|+.+|+++.|++++.+++++..+ ..|.+|+.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn-----FEtilQaHDs~Vr~m~ws~~g~wmiSgD~g---G~iKyWqp 167 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN-----FETILQAHDSPVRTMKWSHNGTWMISGDKG---GMIKYWQP 167 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceee-----HHHHhhhhcccceeEEEccCCCEEEEcCCC---ceEEeccc
Confidence 4579999999999999999999999999975432 234556799999999999999999998776 57777775
Q ss_pred ccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCC
Q 013578 171 EKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQL 250 (440)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 250 (440)
........ ..+.. .....+.++|++. .+++|++|++|+|||....+....+.+|..
T Consensus 168 nmnnVk~~-----------------~ahh~------eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~GHgw 223 (464)
T KOG0284|consen 168 NMNNVKII-----------------QAHHA------EAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGW 223 (464)
T ss_pred chhhhHHh-----------------hHhhh------hhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheeccCCC
Confidence 54311000 00000 1223445577666 899999999999999998888888999999
Q ss_pred cccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q 013578 251 KNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINV 330 (440)
Q Consensus 251 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~ 330 (440)
.|+++.|+|.-.++++|+.|..|++||.+++. ++.++.+|+..|..+.|+|++++|+++|.|..++++|+++
T Consensus 224 dVksvdWHP~kgLiasgskDnlVKlWDprSg~--------cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~ 295 (464)
T KOG0284|consen 224 DVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS--------CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT 295 (464)
T ss_pred CcceeccCCccceeEEccCCceeEeecCCCcc--------hhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH
Confidence 99999999999999999999999999998887 8999999999999999999999999999999999999996
Q ss_pred cccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEE-ecCCEEEEEEcCCccchhhhhccccCCeEEEEecCC
Q 013578 331 RYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAA-THGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPK 408 (440)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~-~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~ 408 (440)
.+.+ ....+|...+.++.|+|-.. +|++ |.||.|..|.+...+++..+..+|.+.|++++|+|-
T Consensus 296 mkEl--------------~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPl 361 (464)
T KOG0284|consen 296 MKEL--------------FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPL 361 (464)
T ss_pred hHHH--------------HHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeecccc
Confidence 5443 33457788899999999766 4444 569999999999888888888899999999999999
Q ss_pred CCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 409 TIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 409 ~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
| .+|++|+.|.++++|.-..
T Consensus 362 G--------hil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 362 G--------HILATGSNDRTVRFWTRNR 381 (464)
T ss_pred c--------eeEeecCCCcceeeeccCC
Confidence 9 8999999999999997653
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-37 Score=258.08 Aligned_cols=278 Identities=19% Similarity=0.301 Sum_probs=230.3
Q ss_pred cceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccc
Q 013578 92 DSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEE 171 (440)
Q Consensus 92 ~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~ 171 (440)
..|++|+|+.+|.+||||+.||.+|+|+..... ......|.++|.++.|+.+|.+|++++.| ..+.+|+..
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l------~~tl~~HkgPI~slKWnk~G~yilS~~vD---~ttilwd~~ 306 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL------ISTLGQHKGPIFSLKWNKKGTYILSGGVD---GTTILWDAH 306 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchh------hhhhhccCCceEEEEEcCCCCEEEeccCC---ccEEEEecc
Confidence 579999999999999999999999999987653 45566788999999999999999999988 345555543
Q ss_pred cccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCc
Q 013578 172 KAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLK 251 (440)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 251 (440)
........... ..+...+.|. +.. -+++++.|+.|+|+.+....++.++.+|..+
T Consensus 307 ~g~~~q~f~~~-s~~~lDVdW~-----------------------~~~-~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~ 361 (524)
T KOG0273|consen 307 TGTVKQQFEFH-SAPALDVDWQ-----------------------SND-EFATSSTDGCIHVCKVGEDRPVKTFIGHHGE 361 (524)
T ss_pred CceEEEeeeec-cCCccceEEe-----------------------cCc-eEeecCCCceEEEEEecCCCcceeeecccCc
Confidence 32211111000 0011122231 222 6999999999999999999999999999999
Q ss_pred ccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCC---------CEEEEEeCCCc
Q 013578 252 NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS---------EQIITASKDGT 322 (440)
Q Consensus 252 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~---------~~l~s~~~dg~ 322 (440)
|.++.|+|.|.+|++++.|++++||...... ....+.+|...|..+.|+|.| ..+++++.|++
T Consensus 362 V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~--------~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst 433 (524)
T KOG0273|consen 362 VNALKWNPTGSLLASCSDDGTLKIWSMGQSN--------SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST 433 (524)
T ss_pred eEEEEECCCCceEEEecCCCeeEeeecCCCc--------chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe
Confidence 9999999999999999999999999986655 788899999999999999964 46899999999
Q ss_pred EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeE
Q 013578 323 LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEIT 401 (440)
Q Consensus 323 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~ 401 (440)
|++||+..+.+ ++....|..+|.+++|+|+|+++|+|+ ||.|.+|++++++..+... ..+.|.
T Consensus 434 V~lwdv~~gv~--------------i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~--~~~~If 497 (524)
T KOG0273|consen 434 VKLWDVESGVP--------------IHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ--GTGGIF 497 (524)
T ss_pred EEEEEccCCce--------------eEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec--CCCeEE
Confidence 99999996654 344557788899999999999999998 9999999999999999874 566799
Q ss_pred EEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 402 CMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 402 ~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
.++|+.+| .+|..+-.|+.+++-|++
T Consensus 498 el~Wn~~G--------~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 498 ELCWNAAG--------DKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEEcCCC--------CEEEEEecCCCceEEEec
Confidence 99999998 889999999999998875
No 17
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-37 Score=253.86 Aligned_cols=302 Identities=17% Similarity=0.270 Sum_probs=234.8
Q ss_pred cccCccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEE
Q 013578 77 KRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVA 156 (440)
Q Consensus 77 ~~~~~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~ 156 (440)
..++....+.|..|++.|+-+.||++|+||||++.|.+..+|++..... ++......+|..+|..+.|+||.++++++
T Consensus 210 ~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~--~kl~~tlvgh~~~V~yi~wSPDdryLlaC 287 (519)
T KOG0293|consen 210 LQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH--FKLKKTLVGHSQPVSYIMWSPDDRYLLAC 287 (519)
T ss_pred ccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc--eeeeeeeecccCceEEEEECCCCCeEEec
Confidence 3444556788999999999999999999999999999999999876543 55677788999999999999999999999
Q ss_pred eecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeC
Q 013578 157 THNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHG 236 (440)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~ 236 (440)
+.+ ..++.|+............. ..+...++.+.|||. .+++|+.|+++..||+
T Consensus 288 g~~---e~~~lwDv~tgd~~~~y~~~----------------------~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdl 341 (519)
T KOG0293|consen 288 GFD---EVLSLWDVDTGDLRHLYPSG----------------------LGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDL 341 (519)
T ss_pred Cch---HheeeccCCcchhhhhcccC----------------------cCCCcceeEEccCCc-eeEecCCCCcEEEecC
Confidence 887 34777776655322211111 123344556689998 8999999999999998
Q ss_pred CCCceeeeeeC-CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEE
Q 013578 237 KTGKLLGNVDT-NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315 (440)
Q Consensus 237 ~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 315 (440)
. |..+...++ ....|.++++++||+++++.+.|..|++|+..... ... +.....+|+++..|.++++++
T Consensus 342 D-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~--------dr~-lise~~~its~~iS~d~k~~L 411 (519)
T KOG0293|consen 342 D-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV--------DRG-LISEEQPITSFSISKDGKLAL 411 (519)
T ss_pred C-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhh--------hhc-cccccCceeEEEEcCCCcEEE
Confidence 7 444444443 23458899999999999999999999999975543 111 333557899999999999999
Q ss_pred EEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeC-CCCCEEEEec-CCEEEEEEcCCccchhhhh
Q 013578 316 TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLS-SDGKILAATH-GSTLQWLSVETGKVLDTAE 393 (440)
Q Consensus 316 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~ 393 (440)
+.=.+..+++||++....+...... ..... +-.-+|. .+..++|+|+ |+.|+||+..+|+++..+
T Consensus 412 vnL~~qei~LWDl~e~~lv~kY~Gh-----------kq~~f-iIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L- 478 (519)
T KOG0293|consen 412 VNLQDQEIHLWDLEENKLVRKYFGH-----------KQGHF-IIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL- 478 (519)
T ss_pred EEcccCeeEEeecchhhHHHHhhcc-----------cccce-EEEeccCCCCcceEEecCCCceEEEEEccCCceeEee-
Confidence 9999999999999855443221111 11112 2233443 4557999987 899999999999999999
Q ss_pred ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 394 KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 394 ~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
.||...|++|+|+|..+ .++|++|+||+||||....
T Consensus 479 sGHs~~vNcVswNP~~p-------~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 479 SGHSKTVNCVSWNPADP-------EMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cCCcceeeEEecCCCCH-------HHhhccCCCCeEEEecCCc
Confidence 69999999999999875 8999999999999998764
No 18
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.7e-38 Score=262.62 Aligned_cols=296 Identities=18% Similarity=0.267 Sum_probs=241.6
Q ss_pred ccccccccCcceeEEEEcc-CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578 83 DVNTLKGHGDSVTGLCFSS-DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS 161 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~ 161 (440)
.++++.||+..|+++.|.| .+.+|++|+.|+.|+||++.... .+++.+.+|..+|.+++|+++|..+++++.|
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~----~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD-- 279 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR----RCLRTFKGHRKPVRDASFNNCGTSFLSASFD-- 279 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc----ceehhhhcchhhhhhhhccccCCeeeeeecc--
Confidence 4789999999999999999 89999999999999999998733 3788899999999999999999999999998
Q ss_pred cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578 162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL 241 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 241 (440)
..+.+|+.+++... ..+.....+.++-+.|++...+++|+.|+.|+.||+++++.
T Consensus 280 -~~lKlwDtETG~~~------------------------~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv 334 (503)
T KOG0282|consen 280 -RFLKLWDTETGQVL------------------------SRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV 334 (503)
T ss_pred -eeeeeeccccceEE------------------------EEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH
Confidence 67777777665322 22233333445556888877999999999999999999999
Q ss_pred eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC
Q 013578 242 LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG 321 (440)
Q Consensus 242 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg 321 (440)
++.+..|-+.+..+.|-++|+.+++.++|+.++||+.+.... .......+.-...++..+|++.+++.-+.|.
T Consensus 335 vqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~-------ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN 407 (503)
T KOG0282|consen 335 VQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP-------IKNIADPEMHTMPCLTLHPNGKWFAAQSMDN 407 (503)
T ss_pred HHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc-------chhhcchhhccCcceecCCCCCeehhhccCc
Confidence 999999999999999999999999999999999999876541 1111222333466899999999999999999
Q ss_pred cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCe
Q 013578 322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEI 400 (440)
Q Consensus 322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v 400 (440)
.|.++.+.....+... + .+....-..--..+.|||||++|++|+ +|.+.+||.++-+++..+ ++|.+.+
T Consensus 408 ~i~ifs~~~~~r~nkk----K-----~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l-kah~~~c 477 (503)
T KOG0282|consen 408 YIAIFSTVPPFRLNKK----K-----RFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL-KAHDQPC 477 (503)
T ss_pred eEEEEecccccccCHh----h-----hhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc-ccCCcce
Confidence 9999997754332110 0 111111111234689999999999997 899999999999999999 6999999
Q ss_pred EEEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578 401 TCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL 433 (440)
Q Consensus 401 ~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~ 433 (440)
..+.|+|..+ ..+||||.||.|++|+
T Consensus 478 i~v~wHP~e~-------Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 478 IGVDWHPVEP-------SKVATCGWDGLIKIWD 503 (503)
T ss_pred EEEEecCCCc-------ceeEecccCceeEecC
Confidence 9999999863 7899999999999996
No 19
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.3e-35 Score=247.72 Aligned_cols=329 Identities=16% Similarity=0.269 Sum_probs=246.2
Q ss_pred CCCCCCCCCCCCCCCcccCccc----cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCC
Q 013578 62 HSKPHSHSHGDKDQNKRHHPLD----VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPP 137 (440)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~----~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~ 137 (440)
.++|--..+++.|..+.++.-+ -.+++.|..-|+|++|+|||+++||++.||++.+||=.+++.. ..+....+|
T Consensus 157 psRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~v--g~l~~~~aH 234 (603)
T KOG0318|consen 157 PSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKV--GELEDSDAH 234 (603)
T ss_pred CCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEE--EEecCCCCc
Confidence 3444445677777766555332 3467789999999999999999999999999999998876532 233335589
Q ss_pred CCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCC
Q 013578 138 GGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTAD 217 (440)
Q Consensus 138 ~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (440)
.+.|.+++|+||++.+++++.| ..+++|+....... ..|.....-....+.. . .+
T Consensus 235 kGsIfalsWsPDs~~~~T~SaD---kt~KIWdVs~~slv-------------~t~~~~~~v~dqqvG~-------l-Wq- 289 (603)
T KOG0318|consen 235 KGSIFALSWSPDSTQFLTVSAD---KTIKIWDVSTNSLV-------------STWPMGSTVEDQQVGC-------L-WQ- 289 (603)
T ss_pred cccEEEEEECCCCceEEEecCC---ceEEEEEeeccceE-------------EEeecCCchhceEEEE-------E-Ee-
Confidence 9999999999999999999988 67777776554211 1121111111111111 1 12
Q ss_pred CCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCce-----------
Q 013578 218 GSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLV----------- 286 (440)
Q Consensus 218 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~----------- 286 (440)
+. .|++.+.+|+|.+++......+..+.+|...|+++..++++++|++|+.||.|.-|+...+.....
T Consensus 290 kd-~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~ 368 (603)
T KOG0318|consen 290 KD-HLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKG 368 (603)
T ss_pred CC-eEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEE
Confidence 22 799999999999999999999999999999999999999999999999999999999633221100
Q ss_pred ------------------e------------------------------------eeeeeeeeeccc--------cceEE
Q 013578 287 ------------------K------------------------------------AVTSVMQLKGHK--------SAVTW 304 (440)
Q Consensus 287 ------------------~------------------------------------~~~~~~~~~~h~--------~~v~~ 304 (440)
+ ....+..++.+. -...+
T Consensus 369 ~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~ 448 (603)
T KOG0318|consen 369 MAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSA 448 (603)
T ss_pred EeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccce
Confidence 0 000011122111 23568
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEc
Q 013578 305 LCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSV 383 (440)
Q Consensus 305 ~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~ 383 (440)
++++|++..++.|+.|+.|++|.+....... ......|...++.++||||+.|||+|+ .+.+.+||+
T Consensus 449 vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~e------------e~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~ 516 (603)
T KOG0318|consen 449 VAVSPDGSEVAVGGQDGKVHVYSLSGDELKE------------EAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDV 516 (603)
T ss_pred EEEcCCCCEEEEecccceEEEEEecCCcccc------------eeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEc
Confidence 8999999999999999999999998643321 112235567799999999999999998 799999999
Q ss_pred CCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 384 ETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 384 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
.+.+.......-|...|.+++|+|+. .++|||+.|-.|.||++....
T Consensus 517 ~s~~~~~~~w~FHtakI~~~aWsP~n--------~~vATGSlDt~Viiysv~kP~ 563 (603)
T KOG0318|consen 517 ASREVKTNRWAFHTAKINCVAWSPNN--------KLVATGSLDTNVIIYSVKKPA 563 (603)
T ss_pred ccCceecceeeeeeeeEEEEEeCCCc--------eEEEeccccceEEEEEccChh
Confidence 99987544434599999999999998 899999999999999998754
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-35 Score=260.01 Aligned_cols=319 Identities=23% Similarity=0.355 Sum_probs=242.3
Q ss_pred ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
..+++.||-+.|.++.|+.|.++|++||.|-++|||.++..+.. ......+|...|.+.-|..+...+.+.+.++
T Consensus 137 l~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~---~~~~l~gHkd~VvacfF~~~~~~l~tvskdG-- 211 (893)
T KOG0291|consen 137 LHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL---FTYALNGHKDYVVACFFGANSLDLYTVSKDG-- 211 (893)
T ss_pred EeeeecCCccceeEEEeccCCceEEeccccceEEEEEecccccc---ceEeccCCCcceEEEEeccCcceEEEEecCc--
Confidence 45788999999999999999999999999999999999876542 3556778999999999999999999999984
Q ss_pred ceEEeeccccccc--ccc-----c------cccCCCCCCceeeccccc---------------ccceeEE----------
Q 013578 163 CSLYMYGEEKAIS--TNE-----G------KQQSKLPGPEIKWEHHKV---------------HDKRAIL---------- 204 (440)
Q Consensus 163 ~~~~~~~~~~~~~--~~~-----~------~~~~~~~~~~~~~~~~~~---------------~~~~~~~---------- 204 (440)
.+.+|....... ... + ....+.......|...+. |....+.
T Consensus 212 -~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~ 290 (893)
T KOG0291|consen 212 -ALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFG 290 (893)
T ss_pred -eEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeE
Confidence 444444331100 000 0 000000011112211100 0000000
Q ss_pred -----------Ee----ecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec
Q 013578 205 -----------TL----FGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF 269 (440)
Q Consensus 205 -----------~~----~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 269 (440)
.. .....+.++..|..+.+.|+.-|.+-||+.++...+...++|...+++++++|||+++++|+.
T Consensus 291 LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~e 370 (893)
T KOG0291|consen 291 LYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAE 370 (893)
T ss_pred EEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccC
Confidence 00 011223445567744444555688999999888888888999999999999999999999999
Q ss_pred CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCcccccccccc
Q 013578 270 TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLL 349 (440)
Q Consensus 270 dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 349 (440)
||+|+|||...+- +..++..|.+.|+.+.|+..|+.+++.|-||+|+.||+....+. +.+..
T Consensus 371 DgKVKvWn~~Sgf--------C~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf-------RTft~--- 432 (893)
T KOG0291|consen 371 DGKVKVWNTQSGF--------CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF-------RTFTS--- 432 (893)
T ss_pred CCcEEEEeccCce--------EEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee-------eeecC---
Confidence 9999999997776 89999999999999999999999999999999999999865433 22221
Q ss_pred CCCCCeeeeeeEEeCCCCCEEEEec-C-CEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCC
Q 013578 350 DSNGATLQYDRLSLSSDGKILAATH-G-STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDK 427 (440)
Q Consensus 350 ~~~~~~~~v~~~~~s~~g~~l~~~~-~-~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg 427 (440)
....+..+++..|.|.++.+|. | -.|++|++++|+++..+ .||+++|.+++|+|.+ ..|+++|.|.
T Consensus 433 ---P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiL-sGHEgPVs~l~f~~~~--------~~LaS~SWDk 500 (893)
T KOG0291|consen 433 ---PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL-SGHEGPVSGLSFSPDG--------SLLASGSWDK 500 (893)
T ss_pred ---CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehh-cCCCCcceeeEEcccc--------CeEEeccccc
Confidence 1234577899999999999887 4 48999999999999999 6999999999999998 8999999999
Q ss_pred eEEEEeCCCC
Q 013578 428 KVKLWLAPSL 437 (440)
Q Consensus 428 ~i~vw~~~~~ 437 (440)
+||+|++-..
T Consensus 501 TVRiW~if~s 510 (893)
T KOG0291|consen 501 TVRIWDIFSS 510 (893)
T ss_pred eEEEEEeecc
Confidence 9999998543
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.6e-36 Score=249.98 Aligned_cols=299 Identities=20% Similarity=0.333 Sum_probs=233.0
Q ss_pred cCccccccccccCcceeEEEEccCCC-EEEEeeCCCcEEEEecCCCCCc--ceeeEE-------ecCCCCCCCceEEEcc
Q 013578 79 HHPLDVNTLKGHGDSVTGLCFSSDGK-CLATACADGVIRVHKLDDASSK--SFKFLR-------INLPPGGPPTAVAFAD 148 (440)
Q Consensus 79 ~~~~~~~~l~~H~~~V~~l~~s~dg~-~l~t~s~dg~v~vW~~~~~~~~--~~~~~~-------~~~~~~~~v~~v~~~~ 148 (440)
+....++.+. |+.+|.+.+|+|-.. .+++|+.|-+.++|++...... ....++ ...+....|++++|+.
T Consensus 167 I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~ 245 (524)
T KOG0273|consen 167 IPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNN 245 (524)
T ss_pred ccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecC
Confidence 3333445566 999999999999555 8999999999999999752111 000111 1223447899999999
Q ss_pred CCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCC
Q 013578 149 NATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEG 228 (440)
Q Consensus 149 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 228 (440)
+|..|+++..+ ..+.+|+........-.... .+.....| ...|. ++++++-|
T Consensus 246 ~G~~LatG~~~---G~~riw~~~G~l~~tl~~Hk--gPI~slKW----------------------nk~G~-yilS~~vD 297 (524)
T KOG0273|consen 246 DGTLLATGSED---GEARIWNKDGNLISTLGQHK--GPIFSLKW----------------------NKKGT-YILSGGVD 297 (524)
T ss_pred CCCeEEEeecC---cEEEEEecCchhhhhhhccC--CceEEEEE----------------------cCCCC-EEEeccCC
Confidence 99999999988 46667765443211111110 01111222 45566 99999999
Q ss_pred ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEc
Q 013578 229 TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFA 308 (440)
Q Consensus 229 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 308 (440)
+++.+||..+++..+.+..|..+...+.|-.+ ..|++.+.|+.|+++.+.... ++.++.+|.++|.++.|.
T Consensus 298 ~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~--------P~~t~~GH~g~V~alk~n 368 (524)
T KOG0273|consen 298 GTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDR--------PVKTFIGHHGEVNALKWN 368 (524)
T ss_pred ccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCC--------cceeeecccCceEEEEEC
Confidence 99999999999999999988887666777644 567888999999999986655 788999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC---------EEE-EecCCEE
Q 013578 309 PNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK---------ILA-ATHGSTL 378 (440)
Q Consensus 309 p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~---------~l~-~~~~~~i 378 (440)
|.+.+|+++|.|++++||.+....+ .+....|...|..+.|+|.|. .++ ++.|+.|
T Consensus 369 ~tg~LLaS~SdD~TlkiWs~~~~~~--------------~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV 434 (524)
T KOG0273|consen 369 PTGSLLASCSDDGTLKIWSMGQSNS--------------VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTV 434 (524)
T ss_pred CCCceEEEecCCCeeEeeecCCCcc--------------hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeE
Confidence 9999999999999999999875432 234456777888999999764 344 4669999
Q ss_pred EEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 379 QWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 379 ~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
++||+..+.++..+ ..|..+|.+++|+|++ ++|++|+.||.|.+|+.++++
T Consensus 435 ~lwdv~~gv~i~~f-~kH~~pVysvafS~~g--------~ylAsGs~dg~V~iws~~~~~ 485 (524)
T KOG0273|consen 435 KLWDVESGVPIHTL-MKHQEPVYSVAFSPNG--------RYLASGSLDGCVHIWSTKTGK 485 (524)
T ss_pred EEEEccCCceeEee-ccCCCceEEEEecCCC--------cEEEecCCCCeeEeccccchh
Confidence 99999999999999 5899999999999999 999999999999999998875
No 22
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.3e-36 Score=226.08 Aligned_cols=248 Identities=21% Similarity=0.312 Sum_probs=211.6
Q ss_pred ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
.++.|.+|+++|+++.|+-||+|.+|++.|.+||+|+...+. +++...+|+..|..++.+.|..
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-----liktYsghG~EVlD~~~s~Dns----------- 72 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-----LIKTYSGHGHEVLDAALSSDNS----------- 72 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccc-----eeeeecCCCceeeecccccccc-----------
Confidence 467889999999999999999999999999999999988765 6777888888888877765533
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL 242 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 242 (440)
.+++|+.|..+.+||..+|+.+
T Consensus 73 ----------------------------------------------------------kf~s~GgDk~v~vwDV~TGkv~ 94 (307)
T KOG0316|consen 73 ----------------------------------------------------------KFASCGGDKAVQVWDVNTGKVD 94 (307)
T ss_pred ----------------------------------------------------------ccccCCCCceEEEEEcccCeee
Confidence 6888999999999999999999
Q ss_pred eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCc
Q 013578 243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGT 322 (440)
Q Consensus 243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~ 322 (440)
+.+.+|...|+.++|+.+...+++|+.|.++++||.+... ..+++.+....+.|.++.. .+..+++|+.||+
T Consensus 95 Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s------~ePiQildea~D~V~Si~v--~~heIvaGS~DGt 166 (307)
T KOG0316|consen 95 RRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS------FEPIQILDEAKDGVSSIDV--AEHEIVAGSVDGT 166 (307)
T ss_pred eecccccceeeEEEecCcceEEEeccccceeEEEEcccCC------CCccchhhhhcCceeEEEe--cccEEEeeccCCc
Confidence 9999999999999999999999999999999999998754 2367777777889999988 4668999999999
Q ss_pred EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeE
Q 013578 323 LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEIT 401 (440)
Q Consensus 323 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~ 401 (440)
+|.||++.+..... .-..+|++++|++|+..+.++. |+.+++.|-.+|+++..+ ++|...-.
T Consensus 167 vRtydiR~G~l~sD----------------y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sY-kGhkn~ey 229 (307)
T KOG0316|consen 167 VRTYDIRKGTLSSD----------------YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSY-KGHKNMEY 229 (307)
T ss_pred EEEEEeecceeehh----------------hcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHh-ccccccee
Confidence 99999997754311 1123589999999999777765 999999999999999999 58987554
Q ss_pred EE--EecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 402 CM--AWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 402 ~v--~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
.+ +++... ..+++|++||.|++||+...
T Consensus 230 kldc~l~qsd--------thV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 230 KLDCCLNQSD--------THVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred eeeeeecccc--------eeEEeccCCceEEEEEeccc
Confidence 44 455544 79999999999999999764
No 23
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=7.5e-36 Score=239.64 Aligned_cols=299 Identities=13% Similarity=0.137 Sum_probs=230.6
Q ss_pred ccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecC
Q 013578 81 PLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL 160 (440)
Q Consensus 81 ~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~ 160 (440)
+-.+.+|..|+++|.+++.+|+.++++||+.|..-.||++.++. ......+|...|+++.|+.+|.+|+++..+
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge-----~~~eltgHKDSVt~~~FshdgtlLATGdms- 127 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE-----FAGELTGHKDSVTCCSFSHDGTLLATGDMS- 127 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc-----ceeEecCCCCceEEEEEccCceEEEecCCC-
Confidence 45678999999999999999999999999999999999999876 345667899999999999999999999877
Q ss_pred CcceEEeeccccccccccccccCCCCCCceeecccccccceeEE-EeecccccccCCCCCeEEEEeeCCceEEEEeCCCC
Q 013578 161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAIL-TLFGASATYGTADGSTIIASCSEGTDISIWHGKTG 239 (440)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 239 (440)
..+.+|...+. +....+. .......+.++|.+. +|+.|+.||.+.+|.+.++
T Consensus 128 --G~v~v~~~stg------------------------~~~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~ 180 (399)
T KOG0296|consen 128 --GKVLVFKVSTG------------------------GEQWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQ 180 (399)
T ss_pred --ccEEEEEcccC------------------------ceEEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCc
Confidence 34444443332 1111111 222333444566666 8999999999999999998
Q ss_pred ceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCcee--------------------------------
Q 013578 240 KLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVK-------------------------------- 287 (440)
Q Consensus 240 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------------------------------- 287 (440)
...+.+.+|..++++=.|.|+|+.++++..||+|++|++.++..-...
T Consensus 181 ~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~ 260 (399)
T KOG0296|consen 181 ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGV 260 (399)
T ss_pred ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEE
Confidence 888999999999999999999999999999999999998654310000
Q ss_pred ---eeeeeeeee--------ccccceEEEEEcC---CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCC
Q 013578 288 ---AVTSVMQLK--------GHKSAVTWLCFAP---NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNG 353 (440)
Q Consensus 288 ---~~~~~~~~~--------~h~~~v~~~~~~p---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (440)
..+.+.... .+...+.|+.+.| .=.+.|+|+.||+|.|||+..... ...-.
T Consensus 261 ~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~---------------R~~c~ 325 (399)
T KOG0296|consen 261 NNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL---------------RHICE 325 (399)
T ss_pred ccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh---------------heecc
Confidence 001111111 2344455555555 335678999999999999985422 12224
Q ss_pred CeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578 354 ATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL 433 (440)
Q Consensus 354 ~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~ 433 (440)
|...|..+.|-++..+++++.+|.|+.||.++|+++..+ .+|...|.+++.+|+. ++++|+|.|++.+||+
T Consensus 326 he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y-~GH~~~Il~f~ls~~~--------~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 326 HEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTY-TGHQMGILDFALSPQK--------RLVVTVSDDNTALVFE 396 (399)
T ss_pred CCCceEEEEEcCcchheeeccCceEEeeeccccceEEEE-ecCchheeEEEEcCCC--------cEEEEecCCCeEEEEe
Confidence 455689999999444455566999999999999999999 6999999999999998 8999999999999999
Q ss_pred CCC
Q 013578 434 APS 436 (440)
Q Consensus 434 ~~~ 436 (440)
++.
T Consensus 397 v~~ 399 (399)
T KOG0296|consen 397 VPN 399 (399)
T ss_pred cCC
Confidence 763
No 24
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.1e-36 Score=266.19 Aligned_cols=209 Identities=25% Similarity=0.401 Sum_probs=187.1
Q ss_pred ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
..++|.||.++|..++|+|+.++|+++|.|+++|+|.+.+.. +.-...+|..+|..+.|+|.|-
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s-----~~V~y~GH~~PVwdV~F~P~Gy----------- 506 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS-----CLVIYKGHLAPVWDVQFAPRGY----------- 506 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccce-----eEEEecCCCcceeeEEecCCce-----------
Confidence 456799999999999999999999999999999999998765 4455668999999999998754
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL 242 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 242 (440)
++++++.|++.++|......++
T Consensus 507 ----------------------------------------------------------YFatas~D~tArLWs~d~~~Pl 528 (707)
T KOG0263|consen 507 ----------------------------------------------------------YFATASHDQTARLWSTDHNKPL 528 (707)
T ss_pred ----------------------------------------------------------EEEecCCCceeeeeecccCCch
Confidence 7888888999999999999999
Q ss_pred eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCc
Q 013578 243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGT 322 (440)
Q Consensus 243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~ 322 (440)
+.+.+|...+.|+.|+|+.+++++|+.|.++++||+..+. .++.+.||.++|.+++|+|+|++|++|+.||.
T Consensus 529 RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~--------~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~ 600 (707)
T KOG0263|consen 529 RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN--------SVRIFTGHKGPVTALAFSPCGRYLASGDEDGL 600 (707)
T ss_pred hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc--------EEEEecCCCCceEEEEEcCCCceEeecccCCc
Confidence 9999999999999999999999999999999999998887 78899999999999999999999999999999
Q ss_pred EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCcc
Q 013578 323 LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGK 387 (440)
Q Consensus 323 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~ 387 (440)
|++||+.++..+. ...+|...|.++.||.+|..||+|+ |+.|++||+..-.
T Consensus 601 I~iWDl~~~~~v~--------------~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 601 IKIWDLANGSLVK--------------QLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred EEEEEcCCCcchh--------------hhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 9999999765432 2345567799999999999999876 9999999986543
No 25
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=1.3e-35 Score=248.72 Aligned_cols=314 Identities=14% Similarity=0.207 Sum_probs=226.4
Q ss_pred ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
.-..|++|+..|.++++.|.|.+|+|||.|.+|++||+.........+..........|.+++|++.+..|++++..
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~--- 235 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS--- 235 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC---
Confidence 34568899999999999999999999999999999999876544322222333345789999999999999988766
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce-
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL- 241 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~- 241 (440)
....+++........-.+.. .........++|....... .+.|+.+..+++|+.||++|+||+...+.
T Consensus 236 aqakl~DRdG~~~~e~~KGD----QYI~Dm~nTKGHia~lt~g-------~whP~~k~~FlT~s~DgtlRiWdv~~~k~q 304 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGD----QYIRDMYNTKGHIAELTCG-------CWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ 304 (641)
T ss_pred cceeEEccCCceeeeeeccc----hhhhhhhccCCceeeeecc-------ccccCcccceEEecCCCcEEEEecCCchhh
Confidence 33444444333211111111 1112223334444333333 34788888999999999999999976532
Q ss_pred eeeee-----CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc--ceEEEEEcCCCCEE
Q 013578 242 LGNVD-----TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS--AVTWLCFAPNSEQI 314 (440)
Q Consensus 242 ~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l 314 (440)
+..+. +...+++.++|+++|++||+|+.||.|.+|+...... . .....-.+|.. .|+||.||++|++|
T Consensus 305 ~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v---~--p~~~vk~AH~~g~~Itsi~FS~dg~~L 379 (641)
T KOG0772|consen 305 LQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV---R--PVMKVKDAHLPGQDITSISFSYDGNYL 379 (641)
T ss_pred eeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccc---c--cceEeeeccCCCCceeEEEeccccchh
Confidence 22222 2345678899999999999999999999999743321 1 12333456776 89999999999999
Q ss_pred EEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-------CCEEEEEEcCCcc
Q 013578 315 ITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-------GSTLQWLSVETGK 387 (440)
Q Consensus 315 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-------~~~i~i~d~~~~~ 387 (440)
++-+.|+++++||++.....-. . ...-.....-+.++|||+.+++++|. .+.+++||..+-+
T Consensus 380 lSRg~D~tLKvWDLrq~kkpL~------~-----~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 380 LSRGFDDTLKVWDLRQFKKPLN------V-----RTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred hhccCCCceeeeeccccccchh------h-----hcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee
Confidence 9999999999999996533111 0 01111122345699999999999874 2789999999999
Q ss_pred chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 388 VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 388 ~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
.+..+. -....|..+.|+|.- ++|+.|+.||+++||--+
T Consensus 449 ~v~ki~-i~~aSvv~~~WhpkL--------NQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 449 TVYKID-ISTASVVRCLWHPKL--------NQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred eEEEec-CCCceEEEEeecchh--------hheeeecCCCceEEEECc
Confidence 988884 557789999999998 789999999999997543
No 26
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=7.8e-35 Score=252.25 Aligned_cols=287 Identities=30% Similarity=0.519 Sum_probs=230.4
Q ss_pred cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC 163 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~ 163 (440)
++++++|.++|++++|+|++++|++++.||.+++|++.+.. .......|...+..+.|+++++.+++++.+ .
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~---~ 73 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-----LLRTLKGHTGPVRDVAASADGTYLASGSSD---K 73 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-----cEEEEecCCcceeEEEECCCCCEEEEEcCC---C
Confidence 46788999999999999999999999999999999998764 233344566788899999999999988876 4
Q ss_pred eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee
Q 013578 164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG 243 (440)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 243 (440)
.+.+|+........ .+. .+.. ....+.+.+++. ++++++.++.|++||+.+++...
T Consensus 74 ~i~i~~~~~~~~~~-------------~~~---~~~~-------~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~ 129 (289)
T cd00200 74 TIRLWDLETGECVR-------------TLT---GHTS-------YVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCLT 129 (289)
T ss_pred eEEEEEcCcccceE-------------EEe---ccCC-------cEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEEEE
Confidence 66677655421000 000 0110 112223355555 78888889999999999888888
Q ss_pred eeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcE
Q 013578 244 NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTL 323 (440)
Q Consensus 244 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i 323 (440)
.+..|...+.+++|+|++.++++++.++.|++||++..+ ....+..|...|.++.|+|+++.+++++.|+.|
T Consensus 130 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 201 (289)
T cd00200 130 TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK--------CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI 201 (289)
T ss_pred EeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc--------cceeEecCccccceEEECCCcCEEEEecCCCcE
Confidence 888888899999999999999988889999999997554 456677888899999999999999999999999
Q ss_pred EEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEE
Q 013578 324 RVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITC 402 (440)
Q Consensus 324 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~ 402 (440)
++||++....... ...+...+.++.|+|++.++++++ ++.+++|+..+++....+. .|...|.+
T Consensus 202 ~i~d~~~~~~~~~--------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~i~~ 266 (289)
T cd00200 202 KLWDLSTGKCLGT--------------LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS-GHTNSVTS 266 (289)
T ss_pred EEEECCCCceecc--------------hhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc-ccCCcEEE
Confidence 9999986433211 113344688999999999999888 9999999999998888874 89999999
Q ss_pred EEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578 403 MAWAPKTIPMGNQQVSVLATSSVDKKVKLWL 433 (440)
Q Consensus 403 v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~ 433 (440)
++|+|++ .+|++++.||.+++|+
T Consensus 267 ~~~~~~~--------~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 267 LAWSPDG--------KRLASGSADGTIRIWD 289 (289)
T ss_pred EEECCCC--------CEEEEecCCCeEEecC
Confidence 9999997 7999999999999996
No 27
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-34 Score=243.55 Aligned_cols=299 Identities=18% Similarity=0.275 Sum_probs=234.0
Q ss_pred cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC-c
Q 013578 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS-G 162 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~-~ 162 (440)
...+.+|..+++-..|||.|.|+|+|...|+|||||....+.. +...+....++|..++|+.+++++++.+.... -
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hi---LKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerf 128 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHI---LKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERF 128 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCccee---eeeeeeecccccccceeCCCCcEEEEEecCccce
Confidence 5678899999999999999999999999999999998764321 22223345589999999999999998875532 2
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL 242 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 242 (440)
..+.+|+.....-. ..+|.+.+....+ -|.-...+++|++|++|.+|+-...+..
T Consensus 129 g~~F~~DSG~SvGe------------------i~GhSr~ins~~~-------KpsRPfRi~T~sdDn~v~ffeGPPFKFk 183 (603)
T KOG0318|consen 129 GHVFLWDSGNSVGE------------------ITGHSRRINSVDF-------KPSRPFRIATGSDDNTVAFFEGPPFKFK 183 (603)
T ss_pred eEEEEecCCCccce------------------eeccceeEeeeec-------cCCCceEEEeccCCCeEEEeeCCCeeee
Confidence 34566665543211 1222222222222 3444458999999999999998888888
Q ss_pred eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee---ccccceEEEEEcCCCCEEEEEeC
Q 013578 243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK---GHKSAVTWLCFAPNSEQIITASK 319 (440)
Q Consensus 243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~p~~~~l~s~~~ 319 (440)
.++..|..-|.|+.|+|||.+|++++.||+|.+||-.++. .+..+. +|++.|.+++|+||+..|+|++.
T Consensus 184 ~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge--------~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa 255 (603)
T KOG0318|consen 184 SSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE--------KVGELEDSDAHKGSIFALSWSPDSTQFLTVSA 255 (603)
T ss_pred ecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc--------EEEEecCCCCccccEEEEEECCCCceEEEecC
Confidence 8889999999999999999999999999999999976665 455555 89999999999999999999999
Q ss_pred CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCC
Q 013578 320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGE 399 (440)
Q Consensus 320 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~ 399 (440)
|.+++|||+.+..+..+.....+ -....+ .+-|- .+.++.+..+|.|.+++...+..+..+ .+|...
T Consensus 256 Dkt~KIWdVs~~slv~t~~~~~~----------v~dqqv-G~lWq-kd~lItVSl~G~in~ln~~d~~~~~~i-~GHnK~ 322 (603)
T KOG0318|consen 256 DKTIKIWDVSTNSLVSTWPMGST----------VEDQQV-GCLWQ-KDHLITVSLSGTINYLNPSDPSVLKVI-SGHNKS 322 (603)
T ss_pred CceEEEEEeeccceEEEeecCCc----------hhceEE-EEEEe-CCeEEEEEcCcEEEEecccCCChhhee-cccccc
Confidence 99999999998765433221111 111222 34444 666777778999999999999988877 699999
Q ss_pred eEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 400 ITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 400 v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
|+++..+|++ .+|++|+.||.|.-|+..++.+
T Consensus 323 ITaLtv~~d~--------~~i~SgsyDG~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 323 ITALTVSPDG--------KTIYSGSYDGHINSWDSGSGTS 354 (603)
T ss_pred eeEEEEcCCC--------CEEEeeccCceEEEEecCCccc
Confidence 9999999998 8999999999999999988765
No 28
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.6e-35 Score=224.54 Aligned_cols=293 Identities=17% Similarity=0.224 Sum_probs=232.6
Q ss_pred CCCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCC
Q 013578 66 HSHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPP 141 (440)
Q Consensus 66 ~~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v 141 (440)
-..++++.|.++|+|.. +.++++-..+.|+.+...||++.||+++.- .||+||+.+.... ....+.+|...|
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~---Pv~t~e~h~kNV 86 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPN---PVATFEGHTKNV 86 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCC---ceeEEeccCCce
Confidence 34578889999999964 677888778899999999999999999865 6999999988764 344556788899
Q ss_pred ceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeE
Q 013578 142 TAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTI 221 (440)
Q Consensus 142 ~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (440)
+++.|..+|+++++++.| +.+++|+......... +........++..|+ +..
T Consensus 87 taVgF~~dgrWMyTgseD---gt~kIWdlR~~~~qR~------------------------~~~~spVn~vvlhpn-Qte 138 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSED---GTVKIWDLRSLSCQRN------------------------YQHNSPVNTVVLHPN-QTE 138 (311)
T ss_pred EEEEEeecCeEEEecCCC---ceEEEEeccCcccchh------------------------ccCCCCcceEEecCC-cce
Confidence 999999999999999988 5677776655322111 111111222222444 348
Q ss_pred EEEeeCCceEEEEeCCCCceeeeee-CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578 222 IASCSEGTDISIWHGKTGKLLGNVD-TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300 (440)
Q Consensus 222 l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~ 300 (440)
|++|..+|.|++||+.+..+...+- .....+.++.+.|||.+++.+...|++++|++-... ....+.++..++.|.+
T Consensus 139 Lis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~--~~s~l~P~~k~~ah~~ 216 (311)
T KOG0315|consen 139 LISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQ--TASELEPVHKFQAHNG 216 (311)
T ss_pred EEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCC--ccccceEhhheecccc
Confidence 9999999999999999887665553 345678999999999999999999999999986633 2344567888999999
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEE
Q 013578 301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQ 379 (440)
Q Consensus 301 ~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~ 379 (440)
-+..+.+||++++|+++|.|.+++||+.++... ......+|...+..++||.||+||++++ |+.++
T Consensus 217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~~k-------------le~~l~gh~rWvWdc~FS~dg~YlvTassd~~~r 283 (311)
T KOG0315|consen 217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDFFK-------------LELVLTGHQRWVWDCAFSADGEYLVTASSDHTAR 283 (311)
T ss_pred eEEEEEECCCCcEEEeecCCceEEEEecCCcee-------------eEEEeecCCceEEeeeeccCccEEEecCCCCcee
Confidence 999999999999999999999999999985411 1223457778899999999999999976 89999
Q ss_pred EEEcCCccchhhhhccccCCeEEEEec
Q 013578 380 WLSVETGKVLDTAEKAHEGEITCMAWA 406 (440)
Q Consensus 380 i~d~~~~~~~~~~~~~h~~~v~~v~~~ 406 (440)
+|++..++.+... .+|.....|++..
T Consensus 284 lW~~~~~k~v~qy-~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 284 LWDLSAGKEVRQY-QGHHKAAVCVALN 309 (311)
T ss_pred ecccccCceeeec-CCcccccEEEEee
Confidence 9999999999888 5888888777754
No 29
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.1e-36 Score=262.02 Aligned_cols=343 Identities=20% Similarity=0.297 Sum_probs=254.1
Q ss_pred CCCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCC--EEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCC
Q 013578 66 HSHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGK--CLATACADGVIRVHKLDDASSKSFKFLRINLPPGG 139 (440)
Q Consensus 66 ~~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~--~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~ 139 (440)
...++++.|+..+.|+. +++.|+||.+.|.++.|+|+-+ .|++|..|+++++||+.+... +......|.+
T Consensus 118 ~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t----cl~~~~~H~S 193 (775)
T KOG0319|consen 118 TLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT----CLHTMILHKS 193 (775)
T ss_pred ceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch----HHHHHHhhhh
Confidence 56788899999999976 5889999999999999999765 589999999999999986543 3455667889
Q ss_pred CCceEEEccCCCeEEEEeecCCcceEEeeccccccc--------------------------------------------
Q 013578 140 PPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAIS-------------------------------------------- 175 (440)
Q Consensus 140 ~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 175 (440)
.|++++|++|+..+++++.| ..+.+|+......
T Consensus 194 ~vtsL~~~~d~~~~ls~~RD---kvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~ 270 (775)
T KOG0319|consen 194 AVTSLAFSEDSLELLSVGRD---KVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESG 270 (775)
T ss_pred heeeeeeccCCceEEEeccC---cEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccc
Confidence 99999999999999999887 3444444322110
Q ss_pred --ccccccc-C-CCCC-----------------Cceeecccc--------------------------------------
Q 013578 176 --TNEGKQQ-S-KLPG-----------------PEIKWEHHK-------------------------------------- 196 (440)
Q Consensus 176 --~~~~~~~-~-~~~~-----------------~~~~~~~~~-------------------------------------- 196 (440)
.....++ . ++.. ..+.++...
T Consensus 271 ~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~ 350 (775)
T KOG0319|consen 271 KCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRL 350 (775)
T ss_pred hhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEE
Confidence 0000000 0 0000 000000000
Q ss_pred ----cccceeEEEeeccccccc-CCCCCeEEEEeeCCceEEEEeCCCC----ceeeeeeCCCCcccEEEecCCC-CeEEE
Q 013578 197 ----VHDKRAILTLFGASATYG-TADGSTIIASCSEGTDISIWHGKTG----KLLGNVDTNQLKNNMAAISPNG-RFLAA 266 (440)
Q Consensus 197 ----~~~~~~~~~~~~~~~~~~-~~~~~~~l~s~~~d~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~s~~~-~~l~~ 266 (440)
.....++.++........ ..+|. +|++|+.|+++++|.++++ .++....+|...|.+++++..+ .+|++
T Consensus 351 y~~~~~~c~ii~GH~e~vlSL~~~~~g~-llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvs 429 (775)
T KOG0319|consen 351 YTLPTSYCQIIPGHTEAVLSLDVWSSGD-LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVS 429 (775)
T ss_pred EecCCCceEEEeCchhheeeeeecccCc-EEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEE
Confidence 000001111111111111 23443 9999999999999977443 3456678899999999997754 68999
Q ss_pred EecCCCEEEEEeEecCCCce-eeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCcccccc
Q 013578 267 AAFTADVKVWEIVYSKDGLV-KAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLP 345 (440)
Q Consensus 267 ~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 345 (440)
++.|+++++|++...++... ...........|...|+|++++|+..++||||.|.+.+||+++....
T Consensus 430 vS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l------------ 497 (775)
T KOG0319|consen 430 VSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRL------------ 497 (775)
T ss_pred ecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceE------------
Confidence 99999999999976332221 11122234567999999999999999999999999999999984432
Q ss_pred ccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEee
Q 013578 346 IPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSS 424 (440)
Q Consensus 346 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~ 424 (440)
.....+|...|.++.|+|..+.||+++ |.+|+||.+.+..++.++ .||+..|..+.|-.++ .+|++++
T Consensus 498 --~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~-eGH~~aVlra~F~~~~--------~qliS~~ 566 (775)
T KOG0319|consen 498 --LGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF-EGHTSAVLRASFIRNG--------KQLISAG 566 (775)
T ss_pred --EEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeee-cCccceeEeeeeeeCC--------cEEEecc
Confidence 234568888999999999999999976 899999999999999999 5999999999999998 8999999
Q ss_pred CCCeEEEEeCCCCCC
Q 013578 425 VDKKVKLWLAPSLES 439 (440)
Q Consensus 425 ~Dg~i~vw~~~~~~~ 439 (440)
.||.+++|++.+.+|
T Consensus 567 adGliKlWnikt~eC 581 (775)
T KOG0319|consen 567 ADGLIKLWNIKTNEC 581 (775)
T ss_pred CCCcEEEEeccchhh
Confidence 999999999999887
No 30
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.5e-34 Score=261.32 Aligned_cols=263 Identities=29% Similarity=0.481 Sum_probs=216.8
Q ss_pred CcccCcccccccccc-CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEE
Q 013578 76 NKRHHPLDVNTLKGH-GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIV 154 (440)
Q Consensus 76 ~~~~~~~~~~~l~~H-~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~ 154 (440)
..+.+.. ...+.+| ...|.++.|+++|++|++++.|+.+++|+...... .......+|...|..++|+|+++
T Consensus 144 ~~~~~~~-~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---~~~~~l~~h~~~v~~~~fs~d~~--- 216 (456)
T KOG0266|consen 144 SSRVFSL-EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---NLLRELSGHTRGVSDVAFSPDGS--- 216 (456)
T ss_pred cccccee-eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---hhhccccccccceeeeEECCCCc---
Confidence 3344444 5666665 88999999999999999999999999999965442 12333467889999999998876
Q ss_pred EEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEE
Q 013578 155 VATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIW 234 (440)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vw 234 (440)
++++++.|++|++|
T Consensus 217 ------------------------------------------------------------------~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 217 ------------------------------------------------------------------YLLSGSDDKTLRIW 230 (456)
T ss_pred ------------------------------------------------------------------EEEEecCCceEEEe
Confidence 68888999999999
Q ss_pred eC-CCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCE
Q 013578 235 HG-KTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQ 313 (440)
Q Consensus 235 d~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 313 (440)
|+ ..+..++.+.+|...|++++|+|+++++++|+.|++|+|||++.++ +...+.+|.+.|++++|++++.+
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~--------~~~~l~~hs~~is~~~f~~d~~~ 302 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE--------CVRKLKGHSDGISGLAFSPDGNL 302 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe--------EEEeeeccCCceEEEEECCCCCE
Confidence 99 5568899999999999999999999999999999999999998765 88899999999999999999999
Q ss_pred EEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhh
Q 013578 314 IITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTA 392 (440)
Q Consensus 314 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~ 392 (440)
|++++.|+.|++||+.++... .... ........ .++.+.|+|++++++++. |+.+++||+..+..+...
T Consensus 303 l~s~s~d~~i~vwd~~~~~~~-----~~~~----~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~ 372 (456)
T KOG0266|consen 303 LVSASYDGTIRVWDLETGSKL-----CLKL----LSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTY 372 (456)
T ss_pred EEEcCCCccEEEEECCCCcee-----eeec----ccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeee
Confidence 999999999999999987621 0000 11111222 588999999999999877 779999999999998888
Q ss_pred hccccCC---eEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 393 EKAHEGE---ITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 393 ~~~h~~~---v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
.+|... +.+...++.+ .++++|+.|+.|.+|++.++.
T Consensus 373 -~~~~~~~~~~~~~~~~~~~--------~~i~sg~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 373 -TGHSNLVRCIFSPTLSTGG--------KLIYSGSEDGSVYVWDSSSGG 412 (456)
T ss_pred -cccCCcceeEecccccCCC--------CeEEEEeCCceEEEEeCCccc
Confidence 477664 3444556666 899999999999999998754
No 31
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3e-34 Score=259.33 Aligned_cols=269 Identities=23% Similarity=0.395 Sum_probs=224.7
Q ss_pred CCCCCCCCCcccCcc------ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCC
Q 013578 68 HSHGDKDQNKRHHPL------DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPP 141 (440)
Q Consensus 68 ~~~~~~~~~~~~~~~------~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v 141 (440)
.+.+..++..++|.. ..+.+.+|...|++++|+|||+++++|+.|++|+|||+.... ...+...+|...|
T Consensus 174 l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~----~~~~~l~gH~~~v 249 (456)
T KOG0266|consen 174 LAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG----RNLKTLKGHSTYV 249 (456)
T ss_pred EEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC----eEEEEecCCCCce
Confidence 344556677777766 677889999999999999999999999999999999994332 2556677999999
Q ss_pred ceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeE
Q 013578 142 TAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTI 221 (440)
Q Consensus 142 ~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (440)
++++|+|+++ +
T Consensus 250 ~~~~f~p~g~---------------------------------------------------------------------~ 260 (456)
T KOG0266|consen 250 TSVAFSPDGN---------------------------------------------------------------------L 260 (456)
T ss_pred EEEEecCCCC---------------------------------------------------------------------E
Confidence 9999998764 7
Q ss_pred EEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccc
Q 013578 222 IASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSA 301 (440)
Q Consensus 222 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~ 301 (440)
+++|+.|++|++||+++++++..+..|...|++++|++++++|++++.|+.|++||+..+.. . +...+.++...
T Consensus 261 i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~----~--~~~~~~~~~~~ 334 (456)
T KOG0266|consen 261 LVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSK----L--CLKLLSGAENS 334 (456)
T ss_pred EEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCce----e--eeecccCCCCC
Confidence 88999999999999999999999999999999999999999999999999999999976641 0 23455555554
Q ss_pred --eEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEE
Q 013578 302 --VTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTL 378 (440)
Q Consensus 302 --v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i 378 (440)
++++.|+|++.+|++++.|+.+++||++............. . ...+.+...++.++++++|. |+.|
T Consensus 335 ~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~---------~--~~~~~~~~~~~~~~~i~sg~~d~~v 403 (456)
T KOG0266|consen 335 APVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSN---------L--VRCIFSPTLSTGGKLIYSGSEDGSV 403 (456)
T ss_pred CceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCC---------c--ceeEecccccCCCCeEEEEeCCceE
Confidence 99999999999999999999999999997655432111110 0 13355666788999999987 8999
Q ss_pred EEEEcCCccchhhhhccc-cCCeEEEEecCCCCCCCCCcceEEEEee--CCCeEEEEeCC
Q 013578 379 QWLSVETGKVLDTAEKAH-EGEITCMAWAPKTIPMGNQQVSVLATSS--VDKKVKLWLAP 435 (440)
Q Consensus 379 ~i~d~~~~~~~~~~~~~h-~~~v~~v~~~~~~~~~~~~~~~~l~t~~--~Dg~i~vw~~~ 435 (440)
++||..++..+..+ .+| ...+..+.|+|.. .++++++ .|+.+++|..+
T Consensus 404 ~~~~~~s~~~~~~l-~~h~~~~~~~~~~~~~~--------~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 404 YVWDSSSGGILQRL-EGHSKAAVSDLSSHPTE--------NLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EEEeCCccchhhhh-cCCCCCceeccccCCCc--------CeeeecCcCCCceEEEecCC
Confidence 99999999999998 489 8899999999998 8899888 69999999865
No 32
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.2e-35 Score=255.77 Aligned_cols=252 Identities=21% Similarity=0.321 Sum_probs=215.1
Q ss_pred ccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcce
Q 013578 85 NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCS 164 (440)
Q Consensus 85 ~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~ 164 (440)
+.+.||++.|.+++...+|-+|+|||.|.++++|.++.+. ....+.....+|.+.|.+++++..+.
T Consensus 359 ~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~-~~~~~~a~~~gH~~svgava~~~~~a------------- 424 (775)
T KOG0319|consen 359 QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNC-SKSLCVAQANGHTNSVGAVAGSKLGA------------- 424 (775)
T ss_pred EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCc-chhhhhhhhcccccccceeeecccCc-------------
Confidence 4688999999999977788999999999999999995443 23334555677888898888843321
Q ss_pred EEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce---
Q 013578 165 LYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL--- 241 (440)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~--- 241 (440)
.+|++++.|+++++|++...+.
T Consensus 425 -------------------------------------------------------sffvsvS~D~tlK~W~l~~s~~~~~ 449 (775)
T KOG0319|consen 425 -------------------------------------------------------SFFVSVSQDCTLKLWDLPKSKETAF 449 (775)
T ss_pred -------------------------------------------------------cEEEEecCCceEEEecCCCcccccc
Confidence 1899999999999999875221
Q ss_pred --e----eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEE
Q 013578 242 --L----GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315 (440)
Q Consensus 242 --~----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 315 (440)
+ .....|...|+|++++|+.+++|+|+.|.+.+||++.... ....+.||...|+++.|+|..+.++
T Consensus 450 ~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~--------l~~vLsGH~RGvw~V~Fs~~dq~la 521 (775)
T KOG0319|consen 450 PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR--------LLGVLSGHTRGVWCVSFSKNDQLLA 521 (775)
T ss_pred cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce--------EEEEeeCCccceEEEEeccccceeE
Confidence 1 1234688999999999999999999999999999997443 7889999999999999999999999
Q ss_pred EEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcCCccchhhhhc
Q 013578 316 TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVETGKVLDTAEK 394 (440)
Q Consensus 316 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~~~~~~~~~~~ 394 (440)
|+|.|++|+||.+.+..|++ ...||...|..+.|-.+|+.|+++ +||.+++|++++++++..+ .
T Consensus 522 T~SgD~TvKIW~is~fSClk--------------T~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl-D 586 (775)
T KOG0319|consen 522 TCSGDKTVKIWSISTFSCLK--------------TFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL-D 586 (775)
T ss_pred eccCCceEEEEEeccceeee--------------eecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh-h
Confidence 99999999999999876643 346888999999999999988874 5999999999999999999 6
Q ss_pred cccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 395 AHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 395 ~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
+|.+.|++++-++.. .+++||+.||.|.+|.=.+
T Consensus 587 ~H~DrvWaL~~~~~~--------~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 587 AHNDRVWALSVSPLL--------DMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred hccceeEEEeecCcc--------ceeEecCCCeEEEEeecCc
Confidence 999999999999998 8999999999999997544
No 33
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.9e-34 Score=248.79 Aligned_cols=305 Identities=19% Similarity=0.322 Sum_probs=228.4
Q ss_pred cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC 163 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~ 163 (440)
+...+||...++|++++|||+++|||+.||.|+|||...+- ++..+..|...|+.+.|+.+++.+++++.| .
T Consensus 343 VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf-----C~vTFteHts~Vt~v~f~~~g~~llssSLD---G 414 (893)
T KOG0291|consen 343 VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF-----CFVTFTEHTSGVTAVQFTARGNVLLSSSLD---G 414 (893)
T ss_pred eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce-----EEEEeccCCCceEEEEEEecCCEEEEeecC---C
Confidence 34467999999999999999999999999999999998764 667888999999999999999999999988 4
Q ss_pred eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCC-ceEEEEeCCCCcee
Q 013578 164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEG-TDISIWHGKTGKLL 242 (440)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~~i~vwd~~~~~~~ 242 (440)
.++.|+..+.........+. .....++...|.|. ++++|+.| -.|.+|++++|+.+
T Consensus 415 tVRAwDlkRYrNfRTft~P~----------------------p~QfscvavD~sGe-lV~AG~~d~F~IfvWS~qTGqll 471 (893)
T KOG0291|consen 415 TVRAWDLKRYRNFRTFTSPE----------------------PIQFSCVAVDPSGE-LVCAGAQDSFEIFVWSVQTGQLL 471 (893)
T ss_pred eEEeeeecccceeeeecCCC----------------------ceeeeEEEEcCCCC-EEEeeccceEEEEEEEeecCeee
Confidence 55666655442211111110 11223344466677 66666665 45999999999999
Q ss_pred eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCc
Q 013578 243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGT 322 (440)
Q Consensus 243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~ 322 (440)
-.+.+|+++|.+++|+|.+..|++|+.|.+|++||+-.... .+.++. +...+..++|+|+|+.|++++.||.
T Consensus 472 DiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~-------~vEtl~-i~sdvl~vsfrPdG~elaVaTldgq 543 (893)
T KOG0291|consen 472 DILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG-------TVETLE-IRSDVLAVSFRPDGKELAVATLDGQ 543 (893)
T ss_pred ehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCc-------eeeeEe-eccceeEEEEcCCCCeEEEEEecce
Confidence 99999999999999999999999999999999999865431 233333 6678999999999999999999999
Q ss_pred EEEEecCccccccCCCCcc-----cc-ccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhh--
Q 013578 323 LRVWNINVRYHLDEDPKTL-----KV-LPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAE-- 393 (440)
Q Consensus 323 i~iwd~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~-- 393 (440)
|.+||.+...+........ +. ..............++.+++|+||.++++|. .+.|++|++.++-+++.++
T Consensus 544 Itf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS 623 (893)
T KOG0291|consen 544 ITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQIS 623 (893)
T ss_pred EEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEec
Confidence 9999998765542211110 00 0111112223345688999999999887755 7899999998775544332
Q ss_pred ---------------------------c-----------------------cc---cCCeEEEEecCCCCCCCCCcceEE
Q 013578 394 ---------------------------K-----------------------AH---EGEITCMAWAPKTIPMGNQQVSVL 420 (440)
Q Consensus 394 ---------------------------~-----------------------~h---~~~v~~v~~~~~~~~~~~~~~~~l 420 (440)
. .+ .-.|.++.|+|.+ +-+
T Consensus 624 ~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtg--------raF 695 (893)
T KOG0291|consen 624 DNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTG--------RAF 695 (893)
T ss_pred cccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCc--------Cee
Confidence 0 00 1147899999998 889
Q ss_pred EEeeCCCeEEEEeCCC
Q 013578 421 ATSSVDKKVKLWLAPS 436 (440)
Q Consensus 421 ~t~~~Dg~i~vw~~~~ 436 (440)
+.++..| +.||.+.+
T Consensus 696 AaatTEG-l~IYsld~ 710 (893)
T KOG0291|consen 696 AAATTEG-LLIYSLDT 710 (893)
T ss_pred eeecccc-eEEEecCC
Confidence 9999888 77887754
No 34
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-34 Score=246.23 Aligned_cols=249 Identities=17% Similarity=0.323 Sum_probs=215.0
Q ss_pred ccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcce
Q 013578 85 NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCS 164 (440)
Q Consensus 85 ~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~ 164 (440)
+.+..|+..|.++.|+|...+++++-.+|.|.|||.++.. ..+...-.+-+|.+..|.+..+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt-----mVksfeV~~~PvRa~kfiaRkn------------- 68 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT-----MVKSFEVSEVPVRAAKFIARKN------------- 68 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccce-----eeeeeeecccchhhheeeeccc-------------
Confidence 4566799999999999999999999999999999998764 2233333345666666654322
Q ss_pred EEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeee
Q 013578 165 LYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN 244 (440)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 244 (440)
.+++|++|..|++|+..+++.+..
T Consensus 69 --------------------------------------------------------Wiv~GsDD~~IrVfnynt~ekV~~ 92 (794)
T KOG0276|consen 69 --------------------------------------------------------WIVTGSDDMQIRVFNYNTGEKVKT 92 (794)
T ss_pred --------------------------------------------------------eEEEecCCceEEEEecccceeeEE
Confidence 788999999999999999999999
Q ss_pred eeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC-CCCEEEEEeCCCcE
Q 013578 245 VDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP-NSEQIITASKDGTL 323 (440)
Q Consensus 245 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~dg~i 323 (440)
+..|...|+|++.+|...++++++.|-.|++||.. ..+.+.+.+.||..-|.+++|.| |.+.++++|-|++|
T Consensus 93 FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we-------~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTV 165 (794)
T KOG0276|consen 93 FEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWE-------NEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTV 165 (794)
T ss_pred eeccccceeeeeecCCCCeEEecCCccEEEEeecc-------CceeeeeEEcCcceEEEEEEecCCCccceeeeeccccE
Confidence 99999999999999999999999999999999985 34568899999999999999999 55689999999999
Q ss_pred EEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC--CEEEEec-CCEEEEEEcCCccchhhhhccccCCe
Q 013578 324 RVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG--KILAATH-GSTLQWLSVETGKVLDTAEKAHEGEI 400 (440)
Q Consensus 324 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v 400 (440)
++|.+.... +.++..+|...|+++.+-+.| .+|++|. |..++|||.++..++++++ ||...|
T Consensus 166 KVWslgs~~--------------~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe-GHt~Nv 230 (794)
T KOG0276|consen 166 KVWSLGSPH--------------PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE-GHTNNV 230 (794)
T ss_pred EEEEcCCCC--------------CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh-cccccc
Confidence 999998532 234556888999999998866 4888875 7899999999999999995 999999
Q ss_pred EEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 401 TCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 401 ~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
..+.|+|.- .+++|||+||++|||+-.+-
T Consensus 231 s~v~fhp~l--------piiisgsEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 231 SFVFFHPEL--------PIIISGSEDGTVRIWNSKTY 259 (794)
T ss_pred eEEEecCCC--------cEEEEecCCccEEEecCcce
Confidence 999999998 79999999999999997764
No 35
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2e-35 Score=235.89 Aligned_cols=251 Identities=20% Similarity=0.360 Sum_probs=207.0
Q ss_pred CCCcccCccccccccc---cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCC
Q 013578 74 DQNKRHHPLDVNTLKG---HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNA 150 (440)
Q Consensus 74 ~~~~~~~~~~~~~l~~---H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~ 150 (440)
+.+++.....+.++.. ....|.|+.+ |...+++|..|++|+|||..+.. +.....+|.+.|.|+.|...
T Consensus 177 dsNWr~Gr~~~~rinc~Se~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~-----c~~~L~GHtGSVLCLqyd~r- 248 (499)
T KOG0281|consen 177 ESNWRCGRHLLQRINCRSENSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLE-----CLKILTGHTGSVLCLQYDER- 248 (499)
T ss_pred hcchhccceeeeeecCCcccCCceEEEEe--cchhhhcccccCceEEeccccHH-----HHHhhhcCCCcEEeeeccce-
Confidence 3444444444444443 3578999999 55689999999999999988654 55677899999999888532
Q ss_pred CeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCce
Q 013578 151 TSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTD 230 (440)
Q Consensus 151 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 230 (440)
.+++|+.|.+
T Consensus 249 ----------------------------------------------------------------------viisGSSDsT 258 (499)
T KOG0281|consen 249 ----------------------------------------------------------------------VIVSGSSDST 258 (499)
T ss_pred ----------------------------------------------------------------------EEEecCCCce
Confidence 7899999999
Q ss_pred EEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCC
Q 013578 231 ISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPN 310 (440)
Q Consensus 231 i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~ 310 (440)
|++||.++++++.++-.|...|..+.|+ ..++++++.|..|.+||+....+ ..+...+.||...|+.+.| +
T Consensus 259 vrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~-----it~rrVLvGHrAaVNvVdf--d 329 (499)
T KOG0281|consen 259 VRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTD-----ITLRRVLVGHRAAVNVVDF--D 329 (499)
T ss_pred EEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchH-----HHHHHHHhhhhhheeeecc--c
Confidence 9999999999999999999999999987 46899999999999999976542 2256678899999999999 5
Q ss_pred CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccch
Q 013578 311 SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVL 389 (440)
Q Consensus 311 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~ 389 (440)
.+++++++.|.+|++|++.+...+. ...+|...|.|+.+ .|+++++|+ |.+|++||++.|.++
T Consensus 330 ~kyIVsASgDRTikvW~~st~efvR--------------tl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cL 393 (499)
T KOG0281|consen 330 DKYIVSASGDRTIKVWSTSTCEFVR--------------TLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACL 393 (499)
T ss_pred cceEEEecCCceEEEEeccceeeeh--------------hhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHH
Confidence 6699999999999999999876542 23456665655554 688888876 999999999999999
Q ss_pred hhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 390 DTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 390 ~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
..++ ||+.-|.++.|... .+++|+.||+|+|||+..++
T Consensus 394 RvLe-GHEeLvRciRFd~k----------rIVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 394 RVLE-GHEELVRCIRFDNK----------RIVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred HHHh-chHHhhhheeecCc----------eeeeccccceEEEEeccccc
Confidence 9994 99999999999874 79999999999999998754
No 36
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=8.4e-35 Score=232.38 Aligned_cols=254 Identities=19% Similarity=0.335 Sum_probs=212.1
Q ss_pred CCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceE
Q 013578 69 SHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAV 144 (440)
Q Consensus 69 ~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v 144 (440)
.++..|.++++|+. +++.|.||++.|.|+.| |.+.|++||.|.+|+|||+++++. +.....|...|..+
T Consensus 211 VSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~-----l~tlihHceaVLhl 283 (499)
T KOG0281|consen 211 VSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEP-----LNTLIHHCEAVLHL 283 (499)
T ss_pred hcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCch-----hhHHhhhcceeEEE
Confidence 56778888998876 57889999999999999 677999999999999999999873 45667777888888
Q ss_pred EEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEE
Q 013578 145 AFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIAS 224 (440)
Q Consensus 145 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 224 (440)
.|+.. ++++
T Consensus 284 rf~ng-----------------------------------------------------------------------~mvt 292 (499)
T KOG0281|consen 284 RFSNG-----------------------------------------------------------------------YMVT 292 (499)
T ss_pred EEeCC-----------------------------------------------------------------------EEEE
Confidence 88643 8999
Q ss_pred eeCCceEEEEeCCCCc---eeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccc
Q 013578 225 CSEGTDISIWHGKTGK---LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSA 301 (440)
Q Consensus 225 ~~~d~~i~vwd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~ 301 (440)
++.|.++.+||+.... +.+.+.+|...|+.+.|+ .+++++++.|.+|++|++.+.. .+..+.+|+..
T Consensus 293 cSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~e--------fvRtl~gHkRG 362 (499)
T KOG0281|consen 293 CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCE--------FVRTLNGHKRG 362 (499)
T ss_pred ecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEecccee--------eehhhhccccc
Confidence 9999999999998654 335567899999988886 4599999999999999997765 89999999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-ecCCEEEE
Q 013578 302 VTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-THGSTLQW 380 (440)
Q Consensus 302 v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~i~i 380 (440)
|.|+.+ .++++++|+.|.+|++||++.+.++. ...||+.-|.++.|. .+.+++ +.||.|++
T Consensus 363 IAClQY--r~rlvVSGSSDntIRlwdi~~G~cLR--------------vLeGHEeLvRciRFd--~krIVSGaYDGkikv 424 (499)
T KOG0281|consen 363 IACLQY--RDRLVVSGSSDNTIRLWDIECGACLR--------------VLEGHEELVRCIRFD--NKRIVSGAYDGKIKV 424 (499)
T ss_pred ceehhc--cCeEEEecCCCceEEEEeccccHHHH--------------HHhchHHhhhheeec--CceeeeccccceEEE
Confidence 999988 78999999999999999999887652 234777778889884 445555 55999999
Q ss_pred EEcCCccc---------hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 381 LSVETGKV---------LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 381 ~d~~~~~~---------~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
||+.++.. +..+ ..|.+.|..+.|.. ..+++++-|.+|.|||+.++.+
T Consensus 425 Wdl~aaldpra~~~~~Cl~~l-v~hsgRVFrLQFD~----------fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 425 WDLQAALDPRAPASTLCLRTL-VEHSGRVFRLQFDE----------FQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred EecccccCCcccccchHHHhh-hhccceeEEEeecc----------eEEEeccCCCeEEEEEcCCCCc
Confidence 99987643 3344 46999999999987 5799999999999999987654
No 37
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7e-34 Score=252.52 Aligned_cols=306 Identities=16% Similarity=0.254 Sum_probs=201.3
Q ss_pred cccc-ccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeE-----EecCCCCCCCceEEEcc---CCCeEEE
Q 013578 85 NTLK-GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFL-----RINLPPGGPPTAVAFAD---NATSIVV 155 (440)
Q Consensus 85 ~~l~-~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~-----~~~~~~~~~v~~v~~~~---~~~~l~~ 155 (440)
+.+. +|.++|+++.||+||+|||+||.||.||||.+...+....... .......+.+..+.-++ .++....
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 4456 8999999999999999999999999999999876321100000 00000001111111111 0111111
Q ss_pred EeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEe
Q 013578 156 ATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWH 235 (440)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd 235 (440)
-....... +. ...... ......+....+|...++...+ +.+ . +|+++++|.+|++|+
T Consensus 340 ~~~~~s~~-~~-~p~~~f------------~f~ekP~~ef~GHt~DILDlSW-------SKn-~-fLLSSSMDKTVRLWh 396 (712)
T KOG0283|consen 340 RKGSQSPC-VL-LPLKAF------------VFSEKPFCEFKGHTADILDLSW-------SKN-N-FLLSSSMDKTVRLWH 396 (712)
T ss_pred ccccCCcc-cc-CCCccc------------cccccchhhhhccchhheeccc-------ccC-C-eeEeccccccEEeec
Confidence 00000000 00 000000 0001111222333333333222 222 2 899999999999999
Q ss_pred CCCCceeeeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEE
Q 013578 236 GKTGKLLGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQI 314 (440)
Q Consensus 236 ~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l 314 (440)
+...+++..+. |...|+|++|+| |.++|++|+-||+|+||++...+ +.....-..-|++++|.|||++.
T Consensus 397 ~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~---------Vv~W~Dl~~lITAvcy~PdGk~a 466 (712)
T KOG0283|consen 397 PGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK---------VVDWNDLRDLITAVCYSPDGKGA 466 (712)
T ss_pred CCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCe---------eEeehhhhhhheeEEeccCCceE
Confidence 99999999886 678899999999 78999999999999999986543 33444455789999999999999
Q ss_pred EEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC--EEEEecCCEEEEEEcCCccchhhh
Q 013578 315 ITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK--ILAATHGSTLQWLSVETGKVLDTA 392 (440)
Q Consensus 315 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~~~~~i~i~d~~~~~~~~~~ 392 (440)
+.|+.+|.+++|+....+......-..+ ......+. .|+.+.|.|... +|++..|..|+|||.++..++..+
T Consensus 467 vIGt~~G~C~fY~t~~lk~~~~~~I~~~-----~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~Kf 540 (712)
T KOG0283|consen 467 VIGTFNGYCRFYDTEGLKLVSDFHIRLH-----NKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKF 540 (712)
T ss_pred EEEEeccEEEEEEccCCeEEEeeeEeec-----cCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhh
Confidence 9999999999999986544322111110 01111222 689999987654 888899999999999999999988
Q ss_pred hccccC-CeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 393 EKAHEG-EITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 393 ~~~h~~-~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
...|.. .-....|+.|| .+|+++++|..|+||+++..
T Consensus 541 KG~~n~~SQ~~Asfs~Dg--------k~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 541 KGFRNTSSQISASFSSDG--------KHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred cccccCCcceeeeEccCC--------CEEEEeecCceEEEEeCCCC
Confidence 534433 34677899998 89999999999999998543
No 38
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.8e-32 Score=266.34 Aligned_cols=297 Identities=17% Similarity=0.281 Sum_probs=216.0
Q ss_pred cccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCc--ceeeEEecCCCCCCCceEEEccC-CCeEEEEeecCCc
Q 013578 86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSK--SFKFLRINLPPGGPPTAVAFADN-ATSIVVATHNLSG 162 (440)
Q Consensus 86 ~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~--~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~~~~~ 162 (440)
.+.+|.+.|.+++|+|+|++||||+.|++|+||++...... ..........+...+.+++|++. +.++++++.+
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~D--- 554 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFE--- 554 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCC---
Confidence 35569999999999999999999999999999998642111 00001111223467899999875 6778777776
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCC-CCCeEEEEeeCCceEEEEeCCCCce
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA-DGSTIIASCSEGTDISIWHGKTGKL 241 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~~~d~~i~vwd~~~~~~ 241 (440)
..+.+|+........ ....|...+ ..+.+++ ++. +|++|+.|++|++||+.++..
T Consensus 555 g~v~lWd~~~~~~~~----------------~~~~H~~~V-------~~l~~~p~~~~-~L~Sgs~Dg~v~iWd~~~~~~ 610 (793)
T PLN00181 555 GVVQVWDVARSQLVT----------------EMKEHEKRV-------WSIDYSSADPT-LLASGSDDGSVKLWSINQGVS 610 (793)
T ss_pred CeEEEEECCCCeEEE----------------EecCCCCCE-------EEEEEcCCCCC-EEEEEcCCCEEEEEECCCCcE
Confidence 577777765431100 001111111 1223354 444 899999999999999999988
Q ss_pred eeeeeCCCCcccEEEec-CCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCC
Q 013578 242 LGNVDTNQLKNNMAAIS-PNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKD 320 (440)
Q Consensus 242 ~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d 320 (440)
+..+..+ ..+.++.|+ +++.+|++|+.||.|++||++... .....+.+|...|.++.|. ++.+|++++.|
T Consensus 611 ~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~-------~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D 681 (793)
T PLN00181 611 IGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK-------LPLCTMIGHSKTVSYVRFV-DSSTLVSSSTD 681 (793)
T ss_pred EEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC-------ccceEecCCCCCEEEEEEe-CCCEEEEEECC
Confidence 8888754 578889985 579999999999999999997543 1345677899999999997 67899999999
Q ss_pred CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhh-------
Q 013578 321 GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTA------- 392 (440)
Q Consensus 321 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~------- 392 (440)
++|++||++...... . ..+.....+|...+..++|++++.+|++|+ |+.|++|+......+..+
T Consensus 682 ~~ikiWd~~~~~~~~----~----~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~ 753 (793)
T PLN00181 682 NTLKLWDLSMSISGI----N----ETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDP 753 (793)
T ss_pred CEEEEEeCCCCcccc----C----CcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCc
Confidence 999999997431100 0 011223345666788899999999999986 899999998655432111
Q ss_pred -----hccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578 393 -----EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA 434 (440)
Q Consensus 393 -----~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~ 434 (440)
...|...|.+++|+|++ .+|++|+.||.|+||++
T Consensus 754 ~~~~~~~~~~~~V~~v~ws~~~--------~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 754 VSGLEVDDASQFISSVCWRGQS--------STLVAANSTGNIKILEM 792 (793)
T ss_pred ccccccCCCCcEEEEEEEcCCC--------CeEEEecCCCcEEEEec
Confidence 12355679999999998 89999999999999997
No 39
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-33 Score=251.53 Aligned_cols=262 Identities=18% Similarity=0.320 Sum_probs=224.2
Q ss_pred cccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceE
Q 013578 86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSL 165 (440)
Q Consensus 86 ~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~ 165 (440)
.|+.-+..|..++|+|...+++++-..|.|++||..-+. ++..+..|.++|..++|+|+..
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t-----li~rFdeHdGpVRgv~FH~~qp-------------- 64 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT-----LIDRFDEHDGPVRGVDFHPTQP-------------- 64 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhh-----HHhhhhccCCccceeeecCCCC--------------
Confidence 355667889999999999999999999999999998765 5667788999999999998754
Q ss_pred EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeee
Q 013578 166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNV 245 (440)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 245 (440)
++++|++|-.|++|+..+.+++.++
T Consensus 65 -------------------------------------------------------lFVSGGDDykIkVWnYk~rrclftL 89 (1202)
T KOG0292|consen 65 -------------------------------------------------------LFVSGGDDYKIKVWNYKTRRCLFTL 89 (1202)
T ss_pred -------------------------------------------------------eEEecCCccEEEEEecccceehhhh
Confidence 7889999999999999999999999
Q ss_pred eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEE
Q 013578 246 DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRV 325 (440)
Q Consensus 246 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~i 325 (440)
.+|-..|+.+.|++.-.++++++.|.+|+||+..+++ ++..+.||..-|.|.+|+|....++++|-|.+||+
T Consensus 90 ~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~--------~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 90 LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK--------CIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV 161 (1202)
T ss_pred ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc--------eEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence 9999999999999999999999999999999998877 89999999999999999999999999999999999
Q ss_pred EecCccccccCCCCcc-----------ccc----cccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCcc--
Q 013578 326 WNINVRYHLDEDPKTL-----------KVL----PIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGK-- 387 (440)
Q Consensus 326 wd~~~~~~~~~~~~~~-----------~~~----~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~-- 387 (440)
||+...+.-...+... ..+ ....+...||...|+-++|+|.-.++++|+ |..|++|....-+
T Consensus 162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW 241 (1202)
T KOG0292|consen 162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 241 (1202)
T ss_pred EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccce
Confidence 9997544322222200 000 112234568889999999999999999876 7899999886554
Q ss_pred chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 388 VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 388 ~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
.+.+. .+|...|.++-|+|.. .++++.|+|++|||||++.-+
T Consensus 242 EvDtc-rgH~nnVssvlfhp~q--------~lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 242 EVDTC-RGHYNNVSSVLFHPHQ--------DLILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred eehhh-hcccCCcceEEecCcc--------ceeEecCCCccEEEEeccccc
Confidence 33444 6999999999999987 799999999999999998654
No 40
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2e-33 Score=225.26 Aligned_cols=267 Identities=18% Similarity=0.313 Sum_probs=230.6
Q ss_pred CCCCCCCCCCCCcccCccc----cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCC
Q 013578 65 PHSHSHGDKDQNKRHHPLD----VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGP 140 (440)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~----~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~ 140 (440)
-.-.++++.|++.++|+.. ..+|.||-..|..+++|+-..||++++.|+.|+.||++..+ +++...+|-..
T Consensus 163 n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nk-----vIR~YhGHlS~ 237 (460)
T KOG0285|consen 163 NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNK-----VIRHYHGHLSG 237 (460)
T ss_pred ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhh-----hHHHhccccce
Confidence 3456678899999999774 45788999999999999999999999999999999998765 66778888899
Q ss_pred CceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCe
Q 013578 141 PTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGST 220 (440)
Q Consensus 141 v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (440)
|.+++.+|.-.
T Consensus 238 V~~L~lhPTld--------------------------------------------------------------------- 248 (460)
T KOG0285|consen 238 VYCLDLHPTLD--------------------------------------------------------------------- 248 (460)
T ss_pred eEEEeccccce---------------------------------------------------------------------
Confidence 99999988533
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~ 300 (440)
.+++|+.|.++++||+++...+..+.+|..+|..+.+.|-...+++|+.|++|++||++.++ ....+..|..
T Consensus 249 vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk--------t~~tlt~hkk 320 (460)
T KOG0285|consen 249 VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK--------TMITLTHHKK 320 (460)
T ss_pred eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCc--------eeEeeecccc
Confidence 78999999999999999999999999999999999999988899999999999999999887 6777888999
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEE
Q 013578 301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQW 380 (440)
Q Consensus 301 ~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i 380 (440)
.|.+++.+|....||+++.| .|+-|++..+..+ ....+|..-+++++...||-+++.+++|.+.+
T Consensus 321 svral~lhP~e~~fASas~d-nik~w~~p~g~f~--------------~nlsgh~~iintl~~nsD~v~~~G~dng~~~f 385 (460)
T KOG0285|consen 321 SVRALCLHPKENLFASASPD-NIKQWKLPEGEFL--------------QNLSGHNAIINTLSVNSDGVLVSGGDNGSIMF 385 (460)
T ss_pred eeeEEecCCchhhhhccCCc-cceeccCCccchh--------------hccccccceeeeeeeccCceEEEcCCceEEEE
Confidence 99999999999999999987 7999999866433 22456777789999999999888888999999
Q ss_pred EEcCCccchhhhh---c----cccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 381 LSVETGKVLDTAE---K----AHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 381 ~d~~~~~~~~~~~---~----~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
||.++|...+... . ..+..|.+.+|...+ ..|+||..|.+|++|.-+.
T Consensus 386 wdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg--------~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 386 WDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTG--------SRLITGEADKTIKMYKEDE 440 (460)
T ss_pred EecCcCcccccccccccCCccccccceeEEeecccC--------ceEEeccCCcceEEEeccc
Confidence 9999986554431 0 134578999999998 8999999999999997643
No 41
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=9.4e-33 Score=212.11 Aligned_cols=288 Identities=19% Similarity=0.244 Sum_probs=228.3
Q ss_pred ccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCC-eEEEEeecCCcc
Q 013578 85 NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNAT-SIVVATHNLSGC 163 (440)
Q Consensus 85 ~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~~~~~~ 163 (440)
+.+++|...|.+++|+.+|..|++|+.|+++++|+++.... ..-....+|.+.|..++|+|... .+++++.+ .
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~---~~~~~~~gh~~svdql~w~~~~~d~~atas~d---k 87 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF---RKELVYRGHTDSVDQLCWDPKHPDLFATASGD---K 87 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh---hhhhcccCCCcchhhheeCCCCCcceEEecCC---c
Confidence 67889999999999999999999999999999999987632 12234557778899999998654 55555555 4
Q ss_pred eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee
Q 013578 164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG 243 (440)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 243 (440)
.+.+|+..... ....+....+-....++|+|. +++.+..|..|...|.++.+.+.
T Consensus 88 ~ir~wd~r~~k------------------------~~~~i~~~~eni~i~wsp~g~-~~~~~~kdD~it~id~r~~~~~~ 142 (313)
T KOG1407|consen 88 TIRIWDIRSGK------------------------CTARIETKGENINITWSPDGE-YIAVGNKDDRITFIDARTYKIVN 142 (313)
T ss_pred eEEEEEeccCc------------------------EEEEeeccCcceEEEEcCCCC-EEEEecCcccEEEEEecccceee
Confidence 56666554432 222222233333445589999 88888888889999999888776
Q ss_pred eeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcE
Q 013578 244 NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTL 323 (440)
Q Consensus 244 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i 323 (440)
..+. ...+..++|+.++++|+.....|.|.|......+ ++..+++|.....||.|+|+|++||+|+.|..+
T Consensus 143 ~~~~-~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk--------pv~si~AH~snCicI~f~p~GryfA~GsADAlv 213 (313)
T KOG1407|consen 143 EEQF-KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK--------PVQSIKAHPSNCICIEFDPDGRYFATGSADALV 213 (313)
T ss_pred hhcc-cceeeeeeecCCCCEEEEecCCceEEEEeccccc--------cccccccCCcceEEEEECCCCceEeecccccee
Confidence 6554 3456778899888888888888999999875444 788999999999999999999999999999999
Q ss_pred EEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEE
Q 013578 324 RVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITC 402 (440)
Q Consensus 324 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~ 402 (440)
.+||++..-|.+ . ......+|..++||.||++||+++ |..|-|=++++|..+..+. +.++...
T Consensus 214 SLWD~~ELiC~R-------~-------isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~--~~~~t~t 277 (313)
T KOG1407|consen 214 SLWDVDELICER-------C-------ISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP--CEGPTFT 277 (313)
T ss_pred eccChhHhhhhe-------e-------eccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee--ccCCcee
Confidence 999998554432 1 234466789999999999999987 8899999999999999985 9999999
Q ss_pred EEecCCCCCCCCCcceEEEEeeCC---------CeEEEEeCCC
Q 013578 403 MAWAPKTIPMGNQQVSVLATSSVD---------KKVKLWLAPS 436 (440)
Q Consensus 403 v~~~~~~~~~~~~~~~~l~t~~~D---------g~i~vw~~~~ 436 (440)
|+|+|.. .+||-+++| |.|++|-+++
T Consensus 278 VAWHPk~--------~LLAyA~ddk~~d~~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 278 VAWHPKR--------PLLAYACDDKDGDSNREAGTVKIFGLSN 312 (313)
T ss_pred EEecCCC--------ceeeEEecCCCCccccccceeEEecCCC
Confidence 9999997 788877764 6788887764
No 42
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=7.8e-34 Score=216.71 Aligned_cols=288 Identities=17% Similarity=0.237 Sum_probs=224.8
Q ss_pred cccccCcceeEEEEcc---CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 86 TLKGHGDSVTGLCFSS---DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 86 ~l~~H~~~V~~l~~s~---dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
+-.||+.+|..++||| +|-+|++++.||.-.+-+-+++. -+..+.+|.+.|.+.....+...-++++.|...
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgd-----wigtfeghkgavw~~~l~~na~~aasaaadfta 83 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGD-----WIGTFEGHKGAVWSATLNKNATRAASAAADFTA 83 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCC-----cEEeeeccCcceeeeecCchhhhhhhhcccchh
Confidence 3469999999999996 89999999999998877666654 356678899999999998888877777777322
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC-ce
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG-KL 241 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~~ 241 (440)
.+| +..++.....+...-....+.|+.|.. +|++|+.+..+|+||++.. .+
T Consensus 84 ---kvw------------------------~a~tgdelhsf~hkhivk~~af~~ds~-~lltgg~ekllrvfdln~p~Ap 135 (334)
T KOG0278|consen 84 ---KVW------------------------DAVTGDELHSFEHKHIVKAVAFSQDSN-YLLTGGQEKLLRVFDLNRPKAP 135 (334)
T ss_pred ---hhh------------------------hhhhhhhhhhhhhhheeeeEEecccch-hhhccchHHHhhhhhccCCCCC
Confidence 233 322222111111111223334466666 8999999999999999865 35
Q ss_pred eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC
Q 013578 242 LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG 321 (440)
Q Consensus 242 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg 321 (440)
...+.+|...|..+-|....+.|++.+.|++|++||.+++. .+..+. ...+|+++.++++|++|.++ .-+
T Consensus 136 p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt--------~v~sL~-~~s~VtSlEvs~dG~ilTia-~gs 205 (334)
T KOG0278|consen 136 PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT--------EVQSLE-FNSPVTSLEVSQDGRILTIA-YGS 205 (334)
T ss_pred chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCc--------EEEEEe-cCCCCcceeeccCCCEEEEe-cCc
Confidence 67888999999999999999999999999999999999887 555555 56789999999999966554 557
Q ss_pred cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcCCccchhhhhccccCCe
Q 013578 322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVETGKVLDTAEKAHEGEI 400 (440)
Q Consensus 322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~~~~~~~~~~~~h~~~v 400 (440)
.|++||..+-..+.. ..-...|.+.+++|+..++++| .|..++.||..+|+.+..+.++|.++|
T Consensus 206 sV~Fwdaksf~~lKs---------------~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpV 270 (334)
T KOG0278|consen 206 SVKFWDAKSFGLLKS---------------YKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPV 270 (334)
T ss_pred eeEEeccccccceee---------------ccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCce
Confidence 899999986544321 1223447789999998766665 489999999999999988768999999
Q ss_pred EEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 401 TCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 401 ~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
.|+.|+|+| ...++||+||+||+|.+..++.
T Consensus 271 hcVrFSPdG--------E~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 271 HCVRFSPDG--------ELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred EEEEECCCC--------ceeeccCCCceEEEEEecCCCc
Confidence 999999999 8999999999999999987764
No 43
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9e-35 Score=230.29 Aligned_cols=259 Identities=24% Similarity=0.364 Sum_probs=212.8
Q ss_pred ccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcc---eeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceE
Q 013578 89 GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKS---FKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSL 165 (440)
Q Consensus 89 ~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~---~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~ 165 (440)
|...-+-|..|||||+||++|+.||.|.|||..++.... .+....+.-+...|.|+.|+.|..
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-------------- 276 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-------------- 276 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH--------------
Confidence 567779999999999999999999999999998775321 111122233456677777765533
Q ss_pred EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeee
Q 013578 166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNV 245 (440)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 245 (440)
++++|+.||.|++|.+++|.+++.+
T Consensus 277 -------------------------------------------------------MlAsGsqDGkIKvWri~tG~ClRrF 301 (508)
T KOG0275|consen 277 -------------------------------------------------------MLASGSQDGKIKVWRIETGQCLRRF 301 (508)
T ss_pred -------------------------------------------------------HhhccCcCCcEEEEEEecchHHHHh
Confidence 7899999999999999999999999
Q ss_pred e-CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEE
Q 013578 246 D-TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLR 324 (440)
Q Consensus 246 ~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~ 324 (440)
. .|...|+|+.|+.|+..+++++.|.++++.-+..++ ++..++||.+.|+...|.++|.++++++.||+|+
T Consensus 302 drAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK--------~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvk 373 (508)
T KOG0275|consen 302 DRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK--------CLKEFRGHSSYVNEATFTDDGHHIISASSDGTVK 373 (508)
T ss_pred hhhhccCeeEEEEccCcchhhcccccceEEEeccccch--------hHHHhcCccccccceEEcCCCCeEEEecCCccEE
Confidence 7 889999999999999999999999999999998887 8999999999999999999999999999999999
Q ss_pred EEecCccccccCCCCcccccc------c---------------------------cccCCCCCeeeeeeEEeCCCCCEEE
Q 013578 325 VWNINVRYHLDEDPKTLKVLP------I---------------------------PLLDSNGATLQYDRLSLSSDGKILA 371 (440)
Q Consensus 325 iwd~~~~~~~~~~~~~~~~~~------~---------------------------~~~~~~~~~~~v~~~~~s~~g~~l~ 371 (440)
+|+..+..|+.+.......++ + ...........+-++..||.|.++.
T Consensus 374 vW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiY 453 (508)
T KOG0275|consen 374 VWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIY 453 (508)
T ss_pred EecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEE
Confidence 999999888754322111110 0 0111122233455788999999988
Q ss_pred E-ecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578 372 A-THGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL 433 (440)
Q Consensus 372 ~-~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~ 433 (440)
+ |.|+.++.|.+.+|++...+ ..|+..|..++-+|.. ++|++=++||.+++|.
T Consensus 454 cigED~vlYCF~~~sG~LE~tl-~VhEkdvIGl~HHPHq--------NllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 454 CIGEDGVLYCFSVLSGKLERTL-PVHEKDVIGLTHHPHQ--------NLLASYSEDGLLKLWK 507 (508)
T ss_pred EEccCcEEEEEEeecCceeeee-ecccccccccccCccc--------chhhhhcccchhhhcC
Confidence 7 66999999999999999888 5899999999999987 8999999999999996
No 44
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-33 Score=225.59 Aligned_cols=266 Identities=19% Similarity=0.301 Sum_probs=216.3
Q ss_pred CCCCCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCC
Q 013578 64 KPHSHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGG 139 (440)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~ 139 (440)
.......+..+.+.+.|.. ....|+||++.|..++|+..|++||+++.|=.+++||.++. ..+++...+|..
T Consensus 119 ~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~----~~c~ks~~gh~h 194 (406)
T KOG0295|consen 119 SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF----FRCIKSLIGHEH 194 (406)
T ss_pred CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH----HHHHHHhcCccc
Confidence 3333445566777777755 36789999999999999999999999999999999999753 345677788999
Q ss_pred CCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeeccc-ccccCCCC
Q 013578 140 PPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGAS-ATYGTADG 218 (440)
Q Consensus 140 ~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 218 (440)
.|.++.|-|.|.++++++.| ..+..|+.......... ..+.... .+....||
T Consensus 195 ~vS~V~f~P~gd~ilS~srD---~tik~We~~tg~cv~t~------------------------~~h~ewvr~v~v~~DG 247 (406)
T KOG0295|consen 195 GVSSVFFLPLGDHILSCSRD---NTIKAWECDTGYCVKTF------------------------PGHSEWVRMVRVNQDG 247 (406)
T ss_pred ceeeEEEEecCCeeeecccc---cceeEEecccceeEEec------------------------cCchHhEEEEEecCCe
Confidence 99999999999999999988 45566665554222111 1111111 11225567
Q ss_pred CeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCC---------------CCeEEEEecCCCEEEEEeEecCC
Q 013578 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPN---------------GRFLAAAAFTADVKVWEIVYSKD 283 (440)
Q Consensus 219 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~---------------~~~l~~~~~dg~i~i~d~~~~~~ 283 (440)
. ++++|+.|.+|++|-..++++...+..|+.++.|++|.|. ++++.+++.|++|++||+.++.
T Consensus 248 t-i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~- 325 (406)
T KOG0295|consen 248 T-IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM- 325 (406)
T ss_pred e-EEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe-
Confidence 6 9999999999999999999999999999999999999763 3589999999999999998876
Q ss_pred CceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe
Q 013578 284 GLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL 363 (440)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 363 (440)
++.++.+|..+|..++|+|.|+||+++..|+++++||+++.+++.. ...|..-++++.|
T Consensus 326 -------cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~--------------~~ah~hfvt~lDf 384 (406)
T KOG0295|consen 326 -------CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKT--------------LEAHEHFVTSLDF 384 (406)
T ss_pred -------EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeec--------------cCCCcceeEEEec
Confidence 9999999999999999999999999999999999999998876532 2245566889999
Q ss_pred CCCCCEEEEec-CCEEEEEEc
Q 013578 364 SSDGKILAATH-GSTLQWLSV 383 (440)
Q Consensus 364 s~~g~~l~~~~-~~~i~i~d~ 383 (440)
..+..++++|+ |..+++|..
T Consensus 385 h~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 385 HKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCCCceEEeccccceeeeeec
Confidence 99999999998 999999964
No 45
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.8e-33 Score=211.75 Aligned_cols=244 Identities=18% Similarity=0.275 Sum_probs=203.8
Q ss_pred CcceeEEEEccC-CCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeec
Q 013578 91 GDSVTGLCFSSD-GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYG 169 (440)
Q Consensus 91 ~~~V~~l~~s~d-g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~ 169 (440)
.+.+..++|++. .+.+++++.||+++|||+..... .+.....|...|.++.|++..+.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~----Pi~~~kEH~~EV~Svdwn~~~r~----------------- 118 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK----PIHKFKEHKREVYSVDWNTVRRR----------------- 118 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCc----chhHHHhhhhheEEeccccccce-----------------
Confidence 678999999995 56889999999999999654332 45566788899999998764321
Q ss_pred cccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCC
Q 013578 170 EEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQ 249 (440)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 249 (440)
.+++++.|++|++|+...++.+.++.+|.
T Consensus 119 ---------------------------------------------------~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~ 147 (311)
T KOG0277|consen 119 ---------------------------------------------------IFLTSSWDGTIKLWDPNRPNSVQTFNGHN 147 (311)
T ss_pred ---------------------------------------------------eEEeeccCCceEeecCCCCcceEeecCCc
Confidence 67777999999999999999999999999
Q ss_pred CcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC-CCCEEEEEeCCCcEEEEe
Q 013578 250 LKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP-NSEQIITASKDGTLRVWN 327 (440)
Q Consensus 250 ~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~dg~i~iwd 327 (440)
..|...+|+| .++.+++++.|+.+++||++... ....+..|...|.|+.|+. +...|+||+.|+.|++||
T Consensus 148 ~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g--------k~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wD 219 (311)
T KOG0277|consen 148 SCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG--------KFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWD 219 (311)
T ss_pred cEEEEEecCCCCCCeEEEccCCceEEEEEecCCC--------ceeEEEeccceeEeecccccCCcEEEecCCCceEEEEe
Confidence 9999999999 57899999999999999998765 3344788999999999988 566789999999999999
Q ss_pred cCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEe
Q 013578 328 INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAW 405 (440)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~ 405 (440)
++..+ .++....+|...|..+.|||... +||+++ |-+++|||...+.-.......|+.-|..+.|
T Consensus 220 ir~~r-------------~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dw 286 (311)
T KOG0277|consen 220 IRNLR-------------TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDW 286 (311)
T ss_pred hhhcc-------------ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecccc
Confidence 98542 34566689999999999999865 667766 9999999998766444333579999999999
Q ss_pred cCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578 406 APKTIPMGNQQVSVLATSSVDKKVKLWLA 434 (440)
Q Consensus 406 ~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~ 434 (440)
++-.+ .++|+++.|+.++||+.
T Consensus 287 s~~~~-------~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 287 SLFDP-------GQVASTGWDELLYVWNP 308 (311)
T ss_pred ccccC-------ceeeecccccceeeecc
Confidence 98642 79999999999999984
No 46
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=1.3e-32 Score=216.54 Aligned_cols=304 Identities=16% Similarity=0.256 Sum_probs=237.4
Q ss_pred cccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCC-------------CCcceeeEEecCCCCCCCceEEEcc
Q 013578 82 LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDA-------------SSKSFKFLRINLPPGGPPTAVAFAD 148 (440)
Q Consensus 82 ~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~-------------~~~~~~~~~~~~~~~~~v~~v~~~~ 148 (440)
.+...+..|.+++++.+|++||.++||||.|..|+|.|++.. .....++++....|..+|..+.|+|
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 356678899999999999999999999999999999998721 1122367888899999999999999
Q ss_pred CCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCC
Q 013578 149 NATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEG 228 (440)
Q Consensus 149 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 228 (440)
....|++++.| ..+.+++..+.... +..+.+.......++.+.|.|. +++.|.+.
T Consensus 183 re~ILiS~srD---~tvKlFDfsK~saK---------------------rA~K~~qd~~~vrsiSfHPsGe-fllvgTdH 237 (430)
T KOG0640|consen 183 RETILISGSRD---NTVKLFDFSKTSAK---------------------RAFKVFQDTEPVRSISFHPSGE-FLLVGTDH 237 (430)
T ss_pred hhheEEeccCC---CeEEEEecccHHHH---------------------HHHHHhhccceeeeEeecCCCc-eEEEecCC
Confidence 99999999988 34555544332111 1111222233344455688888 89999999
Q ss_pred ceEEEEeCCCCceeeee---eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee-ccc-cceE
Q 013578 229 TDISIWHGKTGKLLGNV---DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK-GHK-SAVT 303 (440)
Q Consensus 229 ~~i~vwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~h~-~~v~ 303 (440)
.++++||+++.++...- ..|...|+++.+++.+++.++|+.||.|++||-...+ ++.++. .|. ..|.
T Consensus 238 p~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r--------Cv~t~~~AH~gsevc 309 (430)
T KOG0640|consen 238 PTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR--------CVRTIGNAHGGSEVC 309 (430)
T ss_pred CceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHH--------HHHHHHhhcCCceee
Confidence 99999999998876543 3577889999999999999999999999999976554 555553 454 4689
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEE
Q 013578 304 WLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWL 381 (440)
Q Consensus 304 ~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~ 381 (440)
+..|..+|+++++.+.|..+++|.+.+++.+........ .+....-+...|+....|+..-+ .+.+.-|
T Consensus 310 Sa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~---------tgrq~~rtqAvFNhtEdyVl~pDEas~slcsW 380 (430)
T KOG0640|consen 310 SAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGT---------TGRQKHRTQAVFNHTEDYVLFPDEASNSLCSW 380 (430)
T ss_pred eEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCc---------ccchhhhhhhhhcCccceEEccccccCceeec
Confidence 999999999999999999999999998877643222110 11222234567888888888765 4789999
Q ss_pred EcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 382 SVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 382 d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
|.+++..+..+.-+|.+.+..+.-+|.+ .-++||+.|-.+|+|--.
T Consensus 381 daRtadr~~l~slgHn~a~R~i~HSP~~--------p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 381 DARTADRVALLSLGHNGAVRWIVHSPVE--------PAFMTCSDDFRARFWYRR 426 (430)
T ss_pred cccchhhhhhcccCCCCCceEEEeCCCC--------Cceeeecccceeeeeeec
Confidence 9999988877777999999999999998 789999999999999754
No 47
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-31 Score=206.74 Aligned_cols=288 Identities=17% Similarity=0.157 Sum_probs=224.6
Q ss_pred cccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceE
Q 013578 86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSL 165 (440)
Q Consensus 86 ~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~ 165 (440)
.|+||..+++.+.++.+|.+|.||+.|.+..||-..+++ .+-...+|.+.|.++....+.+++++++.| ..+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe-----rlGty~GHtGavW~~Did~~s~~liTGSAD---~t~ 76 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE-----RLGTYDGHTGAVWCCDIDWDSKHLITGSAD---QTA 76 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-----eeeeecCCCceEEEEEecCCcceeeecccc---cee
Confidence 478999999999999999999999999999999876665 567788999999999999999999999988 456
Q ss_pred EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEe----eCCceEEEEeCC----
Q 013578 166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASC----SEGTDISIWHGK---- 237 (440)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~----~~d~~i~vwd~~---- 237 (440)
.+|+.+..... ...........+-|+.+|...+++. +..+.|.++|++
T Consensus 77 kLWDv~tGk~l------------------------a~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~ 132 (327)
T KOG0643|consen 77 KLWDVETGKQL------------------------ATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSS 132 (327)
T ss_pred EEEEcCCCcEE------------------------EEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChh
Confidence 66665554222 1222222223334567777444443 345779999988
Q ss_pred ---CCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEE
Q 013578 238 ---TGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQI 314 (440)
Q Consensus 238 ---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l 314 (440)
..++...+..+...++.+-|.|.+++|++|..||.|.+||++++. ..+..-+.|...|+.|+++||..++
T Consensus 133 ~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~-------~~v~s~~~h~~~Ind~q~s~d~T~F 205 (327)
T KOG0643|consen 133 DIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK-------ELVDSDEEHSSKINDLQFSRDRTYF 205 (327)
T ss_pred hhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc-------eeeechhhhccccccccccCCcceE
Confidence 456678888888999999999999999999999999999998775 2555567799999999999999999
Q ss_pred EEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCC---EE------------E
Q 013578 315 ITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS---TL------------Q 379 (440)
Q Consensus 315 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~---~i------------~ 379 (440)
+++|.|.+-++||+++...+.. .....+|++.+++|....++.|.+. .| +
T Consensus 206 iT~s~Dttakl~D~~tl~v~Kt---------------y~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEAr 270 (327)
T KOG0643|consen 206 ITGSKDTTAKLVDVRTLEVLKT---------------YTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEAR 270 (327)
T ss_pred EecccCccceeeeccceeeEEE---------------eeecccccceecccccceEEecCCceeeeeeeecccccchhhh
Confidence 9999999999999997655432 1223558899999988877765432 22 2
Q ss_pred EEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 380 WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 380 i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
+|++...+.+..+ ++|-++|++++|+|+| ...++|++||.||+..++.
T Consensus 271 Fyh~i~eEEigrv-kGHFGPINsvAfhPdG--------ksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 271 FYHLIFEEEIGRV-KGHFGPINSVAFHPDG--------KSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred HHHHHHHHHhccc-cccccCcceeEECCCC--------cccccCCCCceEEEEEecc
Confidence 2333333444455 6999999999999999 8999999999999987653
No 48
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.2e-33 Score=230.20 Aligned_cols=261 Identities=18% Similarity=0.270 Sum_probs=205.8
Q ss_pred CCCCCCCCcccCcccc----ccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecC-CCCCCCce
Q 013578 69 SHGDKDQNKRHHPLDV----NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINL-PPGGPPTA 143 (440)
Q Consensus 69 ~~~~~~~~~~~~~~~~----~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~-~~~~~v~~ 143 (440)
.++...+...+|.... ..+++|..+|+++.|+++|.+++||+.+|.|++|+..... ..... .|...|++
T Consensus 112 ltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn------Vk~~~ahh~eaIRd 185 (464)
T KOG0284|consen 112 LTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN------VKIIQAHHAEAIRD 185 (464)
T ss_pred EeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh------hHHhhHhhhhhhhe
Confidence 3445555666665543 2467899999999999999999999999999999987543 22333 34488999
Q ss_pred EEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEee-cccccccCCCCCeEE
Q 013578 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLF-GASATYGTADGSTII 222 (440)
Q Consensus 144 v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l 222 (440)
++|+|+...+++++.| ..+.+|+..... ..+.+..+- ...++.+.|... ++
T Consensus 186 lafSpnDskF~t~SdD---g~ikiWdf~~~k------------------------ee~vL~GHgwdVksvdWHP~kg-Li 237 (464)
T KOG0284|consen 186 LAFSPNDSKFLTCSDD---GTIKIWDFRMPK------------------------EERVLRGHGWDVKSVDWHPTKG-LI 237 (464)
T ss_pred eccCCCCceeEEecCC---CeEEEEeccCCc------------------------hhheeccCCCCcceeccCCccc-ee
Confidence 9999999999999988 466666654331 111111111 122223344444 99
Q ss_pred EEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccce
Q 013578 223 ASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAV 302 (440)
Q Consensus 223 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v 302 (440)
++++.|..|++||.+++.++.++..|...|..+.|++++++|++++.|..+++||++..+ .++.+++|+..|
T Consensus 238 asgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mk--------El~~~r~Hkkdv 309 (464)
T KOG0284|consen 238 ASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMK--------ELFTYRGHKKDV 309 (464)
T ss_pred EEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhH--------HHHHhhcchhhh
Confidence 999999999999999999999999999999999999999999999999999999998655 688899999999
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEE
Q 013578 303 TWLCFAP-NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQW 380 (440)
Q Consensus 303 ~~~~~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i 380 (440)
++++|+| ...+|.+|+.||.|..|.+.....+ ..-..+|...|.+++|+|-|.+|++|+ |..+++
T Consensus 310 ~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~-------------~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rf 376 (464)
T KOG0284|consen 310 TSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL-------------GEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRF 376 (464)
T ss_pred eeeccccccccceeeccCCCceEEEeccccccc-------------cCCCcccccceeeeeccccceeEeecCCCcceee
Confidence 9999999 5567889999999999998733221 122346778899999999999999987 899999
Q ss_pred EEcC
Q 013578 381 LSVE 384 (440)
Q Consensus 381 ~d~~ 384 (440)
|...
T Consensus 377 w~r~ 380 (464)
T KOG0284|consen 377 WTRN 380 (464)
T ss_pred eccC
Confidence 9753
No 49
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.8e-31 Score=207.32 Aligned_cols=247 Identities=14% Similarity=0.197 Sum_probs=204.1
Q ss_pred EEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEE-Eeecc
Q 013578 131 LRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAIL-TLFGA 209 (440)
Q Consensus 131 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 209 (440)
.+...+|.+.|.++.|++|.+++++++.| ..+.+|+.-.. .....+. .....
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqD---GklIvWDs~Tt------------------------nK~haipl~s~WV 100 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQD---GKLIVWDSFTT------------------------NKVHAIPLPSSWV 100 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccC---CeEEEEEcccc------------------------cceeEEecCceeE
Confidence 35667899999999999999999999988 35555554332 1111111 11122
Q ss_pred cccccCCCCCeEEEEeeCCceEEEEeCCCC------ceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCC
Q 013578 210 SATYGTADGSTIIASCSEGTDISIWHGKTG------KLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKD 283 (440)
Q Consensus 210 ~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 283 (440)
-.++++|.|+ +++.|+.|+...||++.+. ...+.+.+|.+.+.|+.|-+ ...|++++.|.++.+||+..++
T Consensus 101 MtCA~sPSg~-~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~- 177 (343)
T KOG0286|consen 101 MTCAYSPSGN-FVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQ- 177 (343)
T ss_pred EEEEECCCCC-eEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccce-
Confidence 3345688888 9999999999999999865 34577889999999999987 4567899999999999998887
Q ss_pred CceeeeeeeeeeeccccceEEEEEcC-CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEE
Q 013578 284 GLVKAVTSVMQLKGHKSAVTWLCFAP-NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS 362 (440)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 362 (440)
.+..+.+|.+.|.+++++| +++.+++|+-|+..++||++.+.+. ....+|...|+++.
T Consensus 178 -------~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~--------------qtF~ghesDINsv~ 236 (343)
T KOG0286|consen 178 -------QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCV--------------QTFEGHESDINSVR 236 (343)
T ss_pred -------EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCccee--------------EeecccccccceEE
Confidence 7889999999999999999 9999999999999999999977553 23458888899999
Q ss_pred eCCCCCEEEEec-CCEEEEEEcCCccchhhhhcccc---CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 363 LSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHE---GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 363 ~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~---~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
|.|+|.-+++|+ |+..++||++..+.+..+. |. .+|++++|+..| ++|++|..|.++.+||.-.++
T Consensus 237 ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys--~~~~~~gitSv~FS~SG--------RlLfagy~d~~c~vWDtlk~e 306 (343)
T KOG0286|consen 237 FFPSGDAFATGSDDATCRLYDLRADQELAVYS--HDSIICGITSVAFSKSG--------RLLFAGYDDFTCNVWDTLKGE 306 (343)
T ss_pred EccCCCeeeecCCCceeEEEeecCCcEEeeec--cCcccCCceeEEEcccc--------cEEEeeecCCceeEeeccccc
Confidence 999999999987 7999999999999888774 43 479999999999 999999999999999986554
No 50
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.9e-32 Score=239.98 Aligned_cols=281 Identities=16% Similarity=0.226 Sum_probs=229.0
Q ss_pred CCCCCCCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCC
Q 013578 62 HSKPHSHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPP 137 (440)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~ 137 (440)
+++..-..++.-.+.++.|+. ++..|.+|.++|+.++|+|++.++++||.|..|+||+..+.. ++....+|
T Consensus 18 HP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr-----clftL~GH 92 (1202)
T KOG0292|consen 18 HPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR-----CLFTLLGH 92 (1202)
T ss_pred CCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce-----ehhhhccc
Confidence 333333445556677788866 467788999999999999999999999999999999998764 55677788
Q ss_pred CCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCC
Q 013578 138 GGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTAD 217 (440)
Q Consensus 138 ~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (440)
-..|..+.|++.-.
T Consensus 93 lDYVRt~~FHheyP------------------------------------------------------------------ 106 (1202)
T KOG0292|consen 93 LDYVRTVFFHHEYP------------------------------------------------------------------ 106 (1202)
T ss_pred cceeEEeeccCCCc------------------------------------------------------------------
Confidence 89999999987643
Q ss_pred CCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCcee----------
Q 013578 218 GSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVK---------- 287 (440)
Q Consensus 218 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---------- 287 (440)
.++++++|.+|+||+..+++++..+.+|...|.|.+|+|....+++++-|.+|++||+..-+.....
T Consensus 107 ---WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~ 183 (1202)
T KOG0292|consen 107 ---WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRG 183 (1202)
T ss_pred ---eEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhc
Confidence 7888999999999999999999999999999999999999999999999999999998532211110
Q ss_pred -----------eeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCee
Q 013578 288 -----------AVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATL 356 (440)
Q Consensus 288 -----------~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (440)
..-..+.+.||...|+-++|+|.-..|++|+.|..|++|.++..+. .......+|..
T Consensus 184 ~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa------------WEvDtcrgH~n 251 (1202)
T KOG0292|consen 184 QQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA------------WEVDTCRGHYN 251 (1202)
T ss_pred cccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc------------eeehhhhcccC
Confidence 1123456889999999999999999999999999999999874321 12345568888
Q ss_pred eeeeEEeCCCCCEEEE-ecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 357 QYDRLSLSSDGKILAA-THGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 357 ~v~~~~~s~~g~~l~~-~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
.|+++-|+|...++.+ +.|+.|++||+...+.+.++. ...+.-+.++-+|.. ++++. +-|+-+.||.++
T Consensus 252 nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr-rendRFW~laahP~l--------NLfAA-gHDsGm~VFkle 321 (1202)
T KOG0292|consen 252 NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR-RENDRFWILAAHPEL--------NLFAA-GHDSGMIVFKLE 321 (1202)
T ss_pred CcceEEecCccceeEecCCCccEEEEecccccceeeee-ccCCeEEEEEecCCc--------ceeee-ecCCceEEEEEc
Confidence 8999999999888777 559999999999999999884 556789999999997 55554 557778888887
Q ss_pred CCC
Q 013578 436 SLE 438 (440)
Q Consensus 436 ~~~ 438 (440)
...
T Consensus 322 REr 324 (1202)
T KOG0292|consen 322 RER 324 (1202)
T ss_pred ccC
Confidence 543
No 51
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.9e-31 Score=214.46 Aligned_cols=286 Identities=16% Similarity=0.254 Sum_probs=217.7
Q ss_pred ccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCe---EEEEeecCCcceE
Q 013578 89 GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATS---IVVATHNLSGCSL 165 (440)
Q Consensus 89 ~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~---l~~~~~~~~~~~~ 165 (440)
-|.+.|.++... +++|+||++||++|+|+.... ......+|.+++.+++|.-.... +++++.| ..+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk------~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~D---qtl 171 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK------SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMD---QTL 171 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCCc------eEEEEecCCcceeeeEEEecCCccceEEEecCC---ceE
Confidence 489999999887 779999999999999998754 45667789999999988754444 7888777 344
Q ss_pred EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCC--------
Q 013578 166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK-------- 237 (440)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~-------- 237 (440)
.+|..+.......... ...+|...+ .++...++|. .+++|+.|.+|.+|+..
T Consensus 172 ~Lw~~~~~~~~~~~~~------------~~~GHk~~V-------~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E 231 (423)
T KOG0313|consen 172 RLWKWNVGENKVKALK------------VCRGHKRSV-------DSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELE 231 (423)
T ss_pred EEEEecCchhhhhHHh------------Hhcccccce-------eEEEecCCCC-eEEeecccceeeecccCCCcccccc
Confidence 4443333211111000 001222111 1222256676 99999999999999932
Q ss_pred -----------------CCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578 238 -----------------TGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300 (440)
Q Consensus 238 -----------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~ 300 (440)
++.++..+.+|..+|.++.|++ ...+++++.|.+|+.||+..+. ....+. ...
T Consensus 232 ~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~--------~~~~~~-~~k 301 (423)
T KOG0313|consen 232 SSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG--------LKSTLT-TNK 301 (423)
T ss_pred ccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccc--------ceeeee-cCc
Confidence 1234566788999999999998 7789999999999999998876 444444 356
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE-Eec-CCEE
Q 013578 301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA-ATH-GSTL 378 (440)
Q Consensus 301 ~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~-~~~i 378 (440)
.+++++++|..++|++|+.|..+++||.+++.- ........+|...|..+.|+|...++. +++ |+.+
T Consensus 302 sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g-----------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~ 370 (423)
T KOG0313|consen 302 SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG-----------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTV 370 (423)
T ss_pred ceeEeecccccceeeecCCCCceeecCCCCCCC-----------ceeEEeeecchhhhhheecCCCCceEEEEEecCCeE
Confidence 789999999999999999999999999997532 123345568888999999999988655 444 9999
Q ss_pred EEEEcCCcc-chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 379 QWLSVETGK-VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 379 ~i~d~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
++||+++.+ .+..+ .+|.+.|.++.|+..+ ++++||.|.+|+|+.-..
T Consensus 371 klWDvRS~k~plydI-~~h~DKvl~vdW~~~~---------~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 371 KLWDVRSTKAPLYDI-AGHNDKVLSVDWNEGG---------LIVSGGADNKLRIFKGSP 419 (423)
T ss_pred EEEEeccCCCcceee-ccCCceEEEEeccCCc---------eEEeccCcceEEEecccc
Confidence 999999988 88888 5999999999999874 899999999999997654
No 52
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.9e-32 Score=218.93 Aligned_cols=285 Identities=16% Similarity=0.283 Sum_probs=218.2
Q ss_pred cccccccCcceeEEEEccCC-CEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 84 VNTLKGHGDSVTGLCFSSDG-KCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg-~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
+..|.||.+.|.|++=+|.. ..++||+.||.|+|||+.... +...+..|.+.|..+++.. ..+++++.|
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~-----~~~~f~AH~G~V~Gi~v~~--~~~~tvgdD--- 128 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE-----CIRTFKAHEGLVRGICVTQ--TSFFTVGDD--- 128 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhh-----hhheeecccCceeeEEecc--cceEEecCC---
Confidence 56789999999999999976 789999999999999998765 4466678889999999987 667777766
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL 242 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 242 (440)
..+..|..+... ...+........+- .......++||+.+ |.|||.....++
T Consensus 129 KtvK~wk~~~~p-------------------------~~tilg~s~~~gId-h~~~~~~FaTcGe~--i~IWD~~R~~Pv 180 (433)
T KOG0268|consen 129 KTVKQWKIDGPP-------------------------LHTILGKSVYLGID-HHRKNSVFATCGEQ--IDIWDEQRDNPV 180 (433)
T ss_pred cceeeeeccCCc-------------------------ceeeeccccccccc-cccccccccccCce--eeecccccCCcc
Confidence 445555433210 00011111111111 11222278888776 999999988999
Q ss_pred eeeeCCCCcccEEEecCCC-CeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC
Q 013578 243 GNVDTNQLKNNMAAISPNG-RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG 321 (440)
Q Consensus 243 ~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg 321 (440)
..+.-....+.++.|+|-. ..|+++..|+.|.+||++... ++..+. ....-+.|+|+|.+-.|+++++|.
T Consensus 181 ~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~--------Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~ 251 (433)
T KOG0268|consen 181 SSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQAS--------PLKKVI-LTMRTNTICWNPEAFNFVAANEDH 251 (433)
T ss_pred ceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCC--------ccceee-eeccccceecCccccceeeccccc
Confidence 9998888889999999965 567777799999999998776 333322 234567899999888899999999
Q ss_pred cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCe
Q 013578 322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEI 400 (440)
Q Consensus 322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v 400 (440)
.++.||++... .+.....+|...|..+.|||-|+-+++|+ |.+|+||.+..+..........-..|
T Consensus 252 nlY~~DmR~l~-------------~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V 318 (433)
T KOG0268|consen 252 NLYTYDMRNLS-------------RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHV 318 (433)
T ss_pred cceehhhhhhc-------------ccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhhee
Confidence 99999998532 24555668888999999999999888876 99999999998876665533344579
Q ss_pred EEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 401 TCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 401 ~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
.|+.|+-|. .++++||+|+.||+|...-
T Consensus 319 ~~Vk~S~Ds--------kyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 319 FCVKYSMDS--------KYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred eEEEEeccc--------cEEEecCCCcceeeeecch
Confidence 999999998 8999999999999998753
No 53
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-30 Score=228.77 Aligned_cols=285 Identities=21% Similarity=0.294 Sum_probs=222.6
Q ss_pred ccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcce
Q 013578 85 NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCS 164 (440)
Q Consensus 85 ~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~ 164 (440)
..+.||+..|+++++|.|...++||+. +.+++|+..+..+ ++... .+.+.+..|.|.+++++++..++....
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kc-----iRTi~--~~y~l~~~Fvpgd~~Iv~G~k~Gel~v 438 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKC-----IRTIT--CGYILASKFVPGDRYIVLGTKNGELQV 438 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcce-----eEEec--cccEEEEEecCCCceEEEeccCCceEE
Confidence 356799999999999999888888764 5799999987653 33221 147889999999999999998854333
Q ss_pred EEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC-----C
Q 013578 165 LYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT-----G 239 (440)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~-----~ 239 (440)
+.+....-.. ....|... ...+..+||+. .+++++.|.+|++||..- +
T Consensus 439 fdlaS~~l~E-------------------ti~AHdga-------IWsi~~~pD~~-g~vT~saDktVkfWdf~l~~~~~g 491 (888)
T KOG0306|consen 439 FDLASASLVE-------------------TIRAHDGA-------IWSISLSPDNK-GFVTGSADKTVKFWDFKLVVSVPG 491 (888)
T ss_pred EEeehhhhhh-------------------hhhccccc-------eeeeeecCCCC-ceEEecCCcEEEEEeEEEEeccCc
Confidence 3332221110 00111111 11122367777 899999999999998641 2
Q ss_pred cee--------eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCC
Q 013578 240 KLL--------GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS 311 (440)
Q Consensus 240 ~~~--------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 311 (440)
... +++.. ...|.|+.+||||++|+++--|.+++||-+++-+ ....+.||.-||.||..+||+
T Consensus 492 t~~k~lsl~~~rtLel-~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK--------FflsLYGHkLPV~smDIS~DS 562 (888)
T KOG0306|consen 492 TQKKVLSLKHTRTLEL-EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK--------FFLSLYGHKLPVLSMDISPDS 562 (888)
T ss_pred ccceeeeeccceEEec-cccEEEEEEcCCCcEEEEEeccCeEEEEEeccee--------eeeeecccccceeEEeccCCc
Confidence 111 22222 4578999999999999999999999999997665 677899999999999999999
Q ss_pred CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcCCccchh
Q 013578 312 EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVETGKVLD 390 (440)
Q Consensus 312 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~~~~~~~ 390 (440)
..++|||.|..|++|-++-+.|.. ...+|...|.++.|-|...++.++ -|+.++-||...-+.+.
T Consensus 563 klivTgSADKnVKiWGLdFGDCHK--------------S~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq 628 (888)
T KOG0306|consen 563 KLIVTGSADKNVKIWGLDFGDCHK--------------SFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQ 628 (888)
T ss_pred CeEEeccCCCceEEeccccchhhh--------------hhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhhe
Confidence 999999999999999999776632 234677789999999988866665 59999999999999999
Q ss_pred hhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 391 TAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 391 ~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
.+ .+|...|+|++.+|+| .+++++|.|.+||+|....
T Consensus 629 ~L-~~H~~ev~cLav~~~G--------~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 629 KL-DGHHSEVWCLAVSPNG--------SFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred ee-ccchheeeeeEEcCCC--------CeEEeccCCceeEeeeccC
Confidence 99 5999999999999999 8999999999999998764
No 54
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.5e-30 Score=201.14 Aligned_cols=270 Identities=13% Similarity=0.195 Sum_probs=201.7
Q ss_pred CCCCCCCCCCcccCccc-------cccc-cccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCC
Q 013578 67 SHSHGDKDQNKRHHPLD-------VNTL-KGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG 138 (440)
Q Consensus 67 ~~~~~~~~~~~~~~~~~-------~~~l-~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~ 138 (440)
..++.+.|+.+|+|... ...| .+|+..|+.++|+|.|++||+||.|.++.||.-..++ +.+.....+|.
T Consensus 29 ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~e---fecv~~lEGHE 105 (312)
T KOG0645|consen 29 ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGE---FECVATLEGHE 105 (312)
T ss_pred EEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCc---eeEEeeeeccc
Confidence 45777888888888664 1222 3799999999999999999999999999999876544 45677888999
Q ss_pred CCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCC
Q 013578 139 GPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADG 218 (440)
Q Consensus 139 ~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (440)
..|.+++|+++|.+|++++.+ ..+++|........ ........|... ...+.+.|..
T Consensus 106 nEVK~Vaws~sG~~LATCSRD---KSVWiWe~deddEf-------------ec~aVL~~HtqD-------VK~V~WHPt~ 162 (312)
T KOG0645|consen 106 NEVKCVAWSASGNYLATCSRD---KSVWIWEIDEDDEF-------------ECIAVLQEHTQD-------VKHVIWHPTE 162 (312)
T ss_pred cceeEEEEcCCCCEEEEeeCC---CeEEEEEecCCCcE-------------EEEeeecccccc-------ccEEEEcCCc
Confidence 999999999999999999998 78888876532100 000011111111 1122335555
Q ss_pred CeEEEEeeCCceEEEEeCC---CCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee
Q 013578 219 STIIASCSEGTDISIWHGK---TGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL 295 (440)
Q Consensus 219 ~~~l~s~~~d~~i~vwd~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 295 (440)
. +|++++.|.+|++|.-. ..++++++.+|...|.+++|++.|..|++++.|++++||.....- -
T Consensus 163 d-lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~------------~ 229 (312)
T KOG0645|consen 163 D-LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL------------S 229 (312)
T ss_pred c-eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc------------c
Confidence 5 99999999999999766 346889999999999999999999999999999999999864221 1
Q ss_pred eccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC--CCEEEEe
Q 013578 296 KGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD--GKILAAT 373 (440)
Q Consensus 296 ~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~~~ 373 (440)
..|+..+..+.|. ...|++++.|+.|++|.-... .....+.........|...|+++.|.|. ++++.+|
T Consensus 230 ~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~-------~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~ 300 (312)
T KOG0645|consen 230 GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDS-------PDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGG 300 (312)
T ss_pred hhcccceEeeeec--ccceEeccCCCEEEEEEecCC-------CCCchHHHHHhhhcccccccceEEEcCCCCCceeecC
Confidence 2377899999997 457999999999999976521 1112222333445667778999999994 4444456
Q ss_pred cCCEEEEEEcC
Q 013578 374 HGSTLQWLSVE 384 (440)
Q Consensus 374 ~~~~i~i~d~~ 384 (440)
+||.+++|.+.
T Consensus 301 DDG~v~~W~l~ 311 (312)
T KOG0645|consen 301 DDGIVNFWELE 311 (312)
T ss_pred CCceEEEEEec
Confidence 68999999864
No 55
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.1e-31 Score=229.95 Aligned_cols=197 Identities=22% Similarity=0.363 Sum_probs=161.5
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~ 300 (440)
.++++ ..+.+++|+..+.++++++... .+.+..|-|.++++++|...|.+.+||+.... .+...++|.+
T Consensus 387 ~~~Sg-a~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~--------l~Eti~AHdg 455 (888)
T KOG0306|consen 387 LLASG-AGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASAS--------LVETIRAHDG 455 (888)
T ss_pred eeeec-CCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhh--------hhhhhhcccc
Confidence 44444 4566999999999999999764 68889999999999999999999999997765 6777889999
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEE
Q 013578 301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQ 379 (440)
Q Consensus 301 ~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~ 379 (440)
.|++++.+||+..+++||.|.+|++||..-..... ....+.+.+.....-.-...|.++++||||++||++- |++++
T Consensus 456 aIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~--gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVk 533 (888)
T KOG0306|consen 456 AIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVP--GTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVK 533 (888)
T ss_pred ceeeeeecCCCCceEEecCCcEEEEEeEEEEeccC--cccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEE
Confidence 99999999999999999999999999987432210 1111111111111112234588999999999999997 99999
Q ss_pred EEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 380 WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 380 i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
+|-+.+.+....+ -||.-+|.||..+||+ .+++|||.|.+|+||-++=|.|
T Consensus 534 VyflDtlKFflsL-YGHkLPV~smDIS~DS--------klivTgSADKnVKiWGLdFGDC 584 (888)
T KOG0306|consen 534 VYFLDTLKFFLSL-YGHKLPVLSMDISPDS--------KLIVTGSADKNVKIWGLDFGDC 584 (888)
T ss_pred EEEecceeeeeee-cccccceeEEeccCCc--------CeEEeccCCCceEEeccccchh
Confidence 9999999988888 5999999999999998 8999999999999999987765
No 56
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=2.4e-30 Score=232.70 Aligned_cols=236 Identities=14% Similarity=0.168 Sum_probs=184.6
Q ss_pred cccccCcceeEEEEcc-CCCEEEEeeCCCcEEEEecCCCCCc--ceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 86 TLKGHGDSVTGLCFSS-DGKCLATACADGVIRVHKLDDASSK--SFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 86 ~l~~H~~~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~--~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
.+.||.+.|++++|+| ++++|++|+.|++|++||+...... ....+....+|...|.+++|+|++.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~----------- 138 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM----------- 138 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC-----------
Confidence 4789999999999999 8899999999999999999764321 1122344567888888899987642
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL 242 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 242 (440)
.+|++++.|++|++||+.+++.+
T Consensus 139 ---------------------------------------------------------~iLaSgs~DgtVrIWDl~tg~~~ 161 (493)
T PTZ00421 139 ---------------------------------------------------------NVLASAGADMVVNVWDVERGKAV 161 (493)
T ss_pred ---------------------------------------------------------CEEEEEeCCCEEEEEECCCCeEE
Confidence 17889999999999999999999
Q ss_pred eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccc-eEEEEEcCCCCEEEEEe---
Q 013578 243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSA-VTWLCFAPNSEQIITAS--- 318 (440)
Q Consensus 243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~p~~~~l~s~~--- 318 (440)
..+..|...|.+++|+|+|.+|++++.|+.|++||++.++ .+..+.+|.+. +..+.|.+++..+++++
T Consensus 162 ~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~--------~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~ 233 (493)
T PTZ00421 162 EVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT--------IVSSVEAHASAKSQRCLWAKRKDLIITLGCSK 233 (493)
T ss_pred EEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc--------EEEEEecCCCCcceEEEEcCCCCeEEEEecCC
Confidence 9999999999999999999999999999999999998765 56677788765 45678999888877654
Q ss_pred -CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcCCccchhhhhcc
Q 013578 319 -KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSVETGKVLDTAEKA 395 (440)
Q Consensus 319 -~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~~~~~~~~~~~~ 395 (440)
.|+.|++||+++.... .... . ......+....|++++.+|++++ |+.|++||+.+++........
T Consensus 234 s~Dr~VklWDlr~~~~p------~~~~-----~-~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~ 301 (493)
T PTZ00421 234 SQQRQIMLWDTRKMASP------YSTV-----D-LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS 301 (493)
T ss_pred CCCCeEEEEeCCCCCCc------eeEe-----c-cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc
Confidence 4789999999854311 0000 0 01122344577999999887653 899999999999877665445
Q ss_pred ccCCeEEEEecCCC
Q 013578 396 HEGEITCMAWAPKT 409 (440)
Q Consensus 396 h~~~v~~v~~~~~~ 409 (440)
+..++..++|.|..
T Consensus 302 s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 302 SVEPHKGLCMMPKW 315 (493)
T ss_pred CCCCCcceEecccc
Confidence 66778899999974
No 57
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.98 E-value=1e-31 Score=219.35 Aligned_cols=294 Identities=19% Similarity=0.274 Sum_probs=224.6
Q ss_pred CccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeec
Q 013578 80 HPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHN 159 (440)
Q Consensus 80 ~~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~ 159 (440)
+......+..|.+.|..+.|-++...|+||+.|..|++|++...... ......+..++++++.|.++++++++++.+
T Consensus 164 pS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~---~~~tLaGs~g~it~~d~d~~~~~~iAas~d 240 (459)
T KOG0288|consen 164 PSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE---LISTLAGSLGNITSIDFDSDNKHVIAASND 240 (459)
T ss_pred chhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhh---hhhhhhccCCCcceeeecCCCceEEeecCC
Confidence 34456778999999999999999899999999999999999876533 445556677889999999999999999988
Q ss_pred CCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC
Q 013578 160 LSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG 239 (440)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 239 (440)
..+.+|+....... ....+|..++....+ . -+...+++|+.|.+|++||+...
T Consensus 241 ---~~~r~Wnvd~~r~~----------------~TLsGHtdkVt~ak~-------~-~~~~~vVsgs~DRtiK~WDl~k~ 293 (459)
T KOG0288|consen 241 ---KNLRLWNVDSLRLR----------------HTLSGHTDKVTAAKF-------K-LSHSRVVSGSADRTIKLWDLQKA 293 (459)
T ss_pred ---Cceeeeeccchhhh----------------hhhcccccceeeehh-------h-ccccceeeccccchhhhhhhhhh
Confidence 45556655443211 112233333322222 1 22224999999999999999998
Q ss_pred ceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC
Q 013578 240 KLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK 319 (440)
Q Consensus 240 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~ 319 (440)
.+.+++-. ...+..++.+ ...+++|-.|++|++||++... +......+ +.|+++..++++..|.+++.
T Consensus 294 ~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~--------~~~sv~~g-g~vtSl~ls~~g~~lLsssR 361 (459)
T KOG0288|consen 294 YCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSAD--------KTRSVPLG-GRVTSLDLSMDGLELLSSSR 361 (459)
T ss_pred heeccccc-cccccceEec--ceeeeecccccceEEEeccCCc--------eeeEeecC-cceeeEeeccCCeEEeeecC
Confidence 88877654 3344555555 5678899999999999998776 56666655 48999999999999999999
Q ss_pred CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccC
Q 013578 320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEG 398 (440)
Q Consensus 320 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~ 398 (440)
|.++.+.|+++..... .+... .......++.+.|||++.|+++|+ ||.|+||++.++++...+...+..
T Consensus 362 Ddtl~viDlRt~eI~~-------~~sA~---g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~ 431 (459)
T KOG0288|consen 362 DDTLKVIDLRTKEIRQ-------TFSAE---GFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN 431 (459)
T ss_pred CCceeeeecccccEEE-------Eeecc---ccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCC
Confidence 9999999999754321 11111 111123378999999999999987 999999999999998887645554
Q ss_pred -CeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578 399 -EITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL 433 (440)
Q Consensus 399 -~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~ 433 (440)
.|++++|+|.| ..|++++.++.+.+|.
T Consensus 432 ~aI~s~~W~~sG--------~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 432 AAITSLSWNPSG--------SGLLSADKQKAVTLWT 459 (459)
T ss_pred cceEEEEEcCCC--------chhhcccCCcceEecC
Confidence 69999999998 8999999999999994
No 58
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.1e-30 Score=226.31 Aligned_cols=239 Identities=20% Similarity=0.295 Sum_probs=203.6
Q ss_pred cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCC-CCCCCceEEEccCCCeEEEEeecCCcceEEee
Q 013578 90 HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLP-PGGPPTAVAFADNATSIVVATHNLSGCSLYMY 168 (440)
Q Consensus 90 H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~ 168 (440)
+.+.|+++.|+++|.+|+.|..+|.|.|||...... .+.... |...|.+++|...
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-----~~~~~~~h~~rvg~laW~~~------------------- 271 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-----TRTLRGSHASRVGSLAWNSS------------------- 271 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc-----cccccCCcCceeEEEeccCc-------------------
Confidence 378999999999999999999999999999886543 233333 7788888888632
Q ss_pred ccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeee-eeC
Q 013578 169 GEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-VDT 247 (440)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-~~~ 247 (440)
.+.+|+.++.|..+|++..+.... +.+
T Consensus 272 ----------------------------------------------------~lssGsr~~~I~~~dvR~~~~~~~~~~~ 299 (484)
T KOG0305|consen 272 ----------------------------------------------------VLSSGSRDGKILNHDVRISQHVVSTLQG 299 (484)
T ss_pred ----------------------------------------------------eEEEecCCCcEEEEEEecchhhhhhhhc
Confidence 688899999999999998776554 888
Q ss_pred CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC-CCCEEEEEe--CCCcEE
Q 013578 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP-NSEQIITAS--KDGTLR 324 (440)
Q Consensus 248 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~--~dg~i~ 324 (440)
|...|..+.|++|+++||+|+.|+.+.|||..... ....+..|.+.|..++|+| ....||+|+ .|+.|+
T Consensus 300 H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~--------p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~ 371 (484)
T KOG0305|consen 300 HRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE--------PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIK 371 (484)
T ss_pred ccceeeeeEECCCCCeeccCCCccceEeccCCCcc--------ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEE
Confidence 99999999999999999999999999999984433 6778889999999999999 566888876 699999
Q ss_pred EEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec---CCEEEEEEcCCccchhhhhccccCCeE
Q 013578 325 VWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH---GSTLQWLSVETGKVLDTAEKAHEGEIT 401 (440)
Q Consensus 325 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---~~~i~i~d~~~~~~~~~~~~~h~~~v~ 401 (440)
+||..++..+... .....|..+.|++..+-|+++. ++.|.||+..+.+.+..+ .+|...|.
T Consensus 372 fwn~~~g~~i~~v---------------dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l-~gH~~RVl 435 (484)
T KOG0305|consen 372 FWNTNTGARIDSV---------------DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL-LGHTSRVL 435 (484)
T ss_pred EEEcCCCcEeccc---------------ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee-cCCcceeE
Confidence 9999987665332 2234588999999998776643 689999999999999888 69999999
Q ss_pred EEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 402 CMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 402 ~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
.++++||+ ..+++|+.|.++++|++-.
T Consensus 436 ~la~SPdg--------~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 436 YLALSPDG--------ETIVTGAADETLRFWNLFD 462 (484)
T ss_pred EEEECCCC--------CEEEEecccCcEEeccccC
Confidence 99999999 8999999999999999865
No 59
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.98 E-value=2.3e-30 Score=232.91 Aligned_cols=257 Identities=24% Similarity=0.341 Sum_probs=210.4
Q ss_pred CCCCCCCcccCcc----cccc-ccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceE
Q 013578 70 HGDKDQNKRHHPL----DVNT-LKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAV 144 (440)
Q Consensus 70 ~~~~~~~~~~~~~----~~~~-l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v 144 (440)
.+..++....|.. .+.. +.||.+.|+++++..-+.+|++|+.|.+++|||+.++. +.....+|.+.+.++
T Consensus 223 ~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~-----C~~~l~gh~stv~~~ 297 (537)
T KOG0274|consen 223 SGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE-----CTHSLQGHTSSVRCL 297 (537)
T ss_pred ecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-----EEEEecCCCceEEEE
Confidence 3445555555543 3445 99999999999998778899999999999999998876 456666777777766
Q ss_pred EEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEE
Q 013578 145 AFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIAS 224 (440)
Q Consensus 145 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 224 (440)
...+. .+++
T Consensus 298 ~~~~~-----------------------------------------------------------------------~~~s 306 (537)
T KOG0274|consen 298 TIDPF-----------------------------------------------------------------------LLVS 306 (537)
T ss_pred EccCc-----------------------------------------------------------------------eEee
Confidence 65432 6788
Q ss_pred eeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEE
Q 013578 225 CSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTW 304 (440)
Q Consensus 225 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~ 304 (440)
|+.|.+|++|+++++..+..+.+|..+|.++..+ +.++++|+.|+.|++||+...+ ++..+.+|...|.+
T Consensus 307 gs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~--------cl~sl~gH~~~V~s 376 (537)
T KOG0274|consen 307 GSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGK--------CLKSLSGHTGRVYS 376 (537)
T ss_pred ccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhce--------eeeeecCCcceEEE
Confidence 9999999999999999999999999999999988 8899999999999999998665 89999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCcc-ccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEE
Q 013578 305 LCFAPNSEQIITASKDGTLRVWNINVR-YHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLS 382 (440)
Q Consensus 305 ~~~~p~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d 382 (440)
+.+.+. ..+++|+.|++|++||+++. +++. ...+|..-+ -.+...+++|+++. |+.|++||
T Consensus 377 l~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~--------------tl~~h~~~v--~~l~~~~~~Lvs~~aD~~Ik~WD 439 (537)
T KOG0274|consen 377 LIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIH--------------TLQGHTSLV--SSLLLRDNFLVSSSADGTIKLWD 439 (537)
T ss_pred EEecCc-ceEEeeeeccceEeecCCchhhhhh--------------hhcCCcccc--cccccccceeEeccccccEEEee
Confidence 988654 78999999999999999987 4432 223333333 23334567777765 99999999
Q ss_pred cCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 383 VETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 383 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
..+++++..+...|.+.|..+++. + ..+++++.||++++||++++++
T Consensus 440 ~~~~~~~~~~~~~~~~~v~~l~~~-~---------~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 440 AEEGECLRTLEGRHVGGVSALALG-K---------EEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred cccCceeeeeccCCcccEEEeecC-c---------ceEEEEecCCeeEEEecccCch
Confidence 999999999953377899999998 3 4789999999999999999875
No 60
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.2e-28 Score=195.21 Aligned_cols=294 Identities=16% Similarity=0.245 Sum_probs=214.2
Q ss_pred ccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEee--cCCc
Q 013578 85 NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATH--NLSG 162 (440)
Q Consensus 85 ~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~--~~~~ 162 (440)
+.|..-.+.|+++.|+++|.+|++++.|.+++|||..++. ..+....+...+..++|......++.++. |...
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~-----~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGK-----QVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCc-----eeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 3455567889999999999999999999999999998775 33444445567888999888777777665 3233
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL 242 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 242 (440)
..+.+.+.... +...+|...+..... +|-+. .+++++.|++|++||++..++.
T Consensus 83 ryLsl~dNkyl-------------------RYF~GH~~~V~sL~~-------sP~~d-~FlS~S~D~tvrLWDlR~~~cq 135 (311)
T KOG1446|consen 83 RYLSLHDNKYL-------------------RYFPGHKKRVNSLSV-------SPKDD-TFLSSSLDKTVRLWDLRVKKCQ 135 (311)
T ss_pred EEEEeecCceE-------------------EEcCCCCceEEEEEe-------cCCCC-eEEecccCCeEEeeEecCCCCc
Confidence 33334333222 233444444433333 56665 8999999999999999988887
Q ss_pred eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCc
Q 013578 243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGT 322 (440)
Q Consensus 243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~ 322 (440)
..+.... -..++|+|+|-++|++.....|++||++.-..+....... ..+.....+.|.|+|||++|+.+...+.
T Consensus 136 g~l~~~~--~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i---~~~~~~ew~~l~FS~dGK~iLlsT~~s~ 210 (311)
T KOG1446|consen 136 GLLNLSG--RPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSI---TDNDEAEWTDLEFSPDGKSILLSTNASF 210 (311)
T ss_pred eEEecCC--CcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEcc---CCCCccceeeeEEcCCCCEEEEEeCCCc
Confidence 7776543 3457999999999999988899999998876544332211 1144677899999999999999999999
Q ss_pred EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeE
Q 013578 323 LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEIT 401 (440)
Q Consensus 323 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~ 401 (440)
+++.|.-.+..+... . .+...+ ..+ ....|+||++++.+|+ ||.|++|++++|..+..+...+.+++.
T Consensus 211 ~~~lDAf~G~~~~tf-------s--~~~~~~-~~~-~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~ 279 (311)
T KOG1446|consen 211 IYLLDAFDGTVKSTF-------S--GYPNAG-NLP-LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVS 279 (311)
T ss_pred EEEEEccCCcEeeeE-------e--eccCCC-Ccc-eeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCcc
Confidence 999998876533211 1 111111 111 3688999999999987 699999999999999998645899999
Q ss_pred EEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 402 CMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 402 ~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
++.|+|.. .+++| .+..+-+|=...
T Consensus 280 ~~~fnP~~--------~mf~s--a~s~l~fw~p~~ 304 (311)
T KOG1446|consen 280 CVRFNPRY--------AMFVS--ASSNLVFWLPDE 304 (311)
T ss_pred ccccCCce--------eeeee--cCceEEEEeccc
Confidence 99999975 45554 456688886553
No 61
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=2.7e-30 Score=204.42 Aligned_cols=324 Identities=18% Similarity=0.295 Sum_probs=234.3
Q ss_pred cccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578 82 LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS 161 (440)
Q Consensus 82 ~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~ 161 (440)
..++.|.||.+.|+.++.......+.|++.|.+.+||.++++. ++..+.+|.+.|.++.|++.+..+++++.|..
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~-----CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t 213 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA-----CLATYTGHTGSVNSIKFHNSGLLLLTASGDET 213 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeecccc-----ceeeecccccceeeEEeccccceEEEccCCcc
Confidence 3577899999999999998877899999999999999999886 56777899999999999999999999998854
Q ss_pred cceEE---eeccccccccccccccCCCC---CCceeec---cccccccee-EE---Eeecccc-cccCCCCCeEEEEeeC
Q 013578 162 GCSLY---MYGEEKAISTNEGKQQSKLP---GPEIKWE---HHKVHDKRA-IL---TLFGASA-TYGTADGSTIIASCSE 227 (440)
Q Consensus 162 ~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~-~~---~~~~~~~-~~~~~~~~~~l~s~~~ 227 (440)
...+. -|...............+.. ......+ ...++..+. +. .+.+... +-+...|+ .+++++.
T Consensus 214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~-Q~vTaSW 292 (481)
T KOG0300|consen 214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ-QMVTASW 292 (481)
T ss_pred hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc-eeeeeec
Confidence 43222 11111111000000000000 0000000 001111111 11 1111111 11233344 8999999
Q ss_pred CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEE
Q 013578 228 GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF 307 (440)
Q Consensus 228 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 307 (440)
|.+..+||+++++.+..+.+|....+.++-+|..+++++.+.|.+.++||++.. ...+..|+||...|+++.|
T Consensus 293 DRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea-------I~sV~VFQGHtdtVTS~vF 365 (481)
T KOG0300|consen 293 DRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA-------IQSVAVFQGHTDTVTSVVF 365 (481)
T ss_pred cccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh-------cceeeeecccccceeEEEE
Confidence 999999999999999999999999999999999999999999999999999733 2467889999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCc
Q 013578 308 APNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETG 386 (440)
Q Consensus 308 ~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~ 386 (440)
.-+. .+++|+.|.+|++||+++.... +.. -.....++.++.+..++++|.-. +..|++||+...
T Consensus 366 ~~dd-~vVSgSDDrTvKvWdLrNMRsp------lAT--------IRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 366 NTDD-RVVSGSDDRTVKVWDLRNMRSP------LAT--------IRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred ecCC-ceeecCCCceEEEeeeccccCc------cee--------eecCCccceeEeecCCceEEeccCCceEEEEecCCC
Confidence 8654 5899999999999999865321 111 11234577899999999999876 579999999765
Q ss_pred cc---hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 387 KV---LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 387 ~~---~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
++ ...-..+|...|.|++|..+-+ ..-|+++|-|..+.=|++.....
T Consensus 431 RlaRlPrtsRqgHrRMV~c~AW~eehp------~cnLftcGFDR~v~gW~in~p~~ 480 (481)
T KOG0300|consen 431 RLARLPRTSRQGHRRMVTCCAWLEEHP------ACNLFTCGFDRMVAGWKINTPTS 480 (481)
T ss_pred ccccCCcccccccceeeeeeeccccCc------ccccccccccceeeeeEecccCC
Confidence 43 2223368999999999997742 14689999999999999987653
No 62
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=8.2e-30 Score=209.58 Aligned_cols=262 Identities=23% Similarity=0.364 Sum_probs=211.0
Q ss_pred CCCCCCCCCcccCc----cccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCce
Q 013578 68 HSHGDKDQNKRHHP----LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143 (440)
Q Consensus 68 ~~~~~~~~~~~~~~----~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~ 143 (440)
..++..|++.-..+ +.+.+|+||+..|+.+.|+|+...+++++.|..|+||....... ......|..+|+.
T Consensus 234 ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-----~~~~~~h~~~V~~ 308 (506)
T KOG0289|consen 234 ILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE-----PTSSRPHEEPVTG 308 (506)
T ss_pred ceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC-----cccccccccccee
Confidence 35666665554443 34788999999999999999999999999999999999876552 2445678899999
Q ss_pred EEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEE
Q 013578 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIA 223 (440)
Q Consensus 144 v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 223 (440)
+..+|.|. +|+
T Consensus 309 ls~h~tge---------------------------------------------------------------------Yll 319 (506)
T KOG0289|consen 309 LSLHPTGE---------------------------------------------------------------------YLL 319 (506)
T ss_pred eeeccCCc---------------------------------------------------------------------EEE
Confidence 99888776 667
Q ss_pred EeeCCceEEEEeCCCCceeeeeeC--CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccc
Q 013578 224 SCSEGTDISIWHGKTGKLLGNVDT--NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSA 301 (440)
Q Consensus 224 s~~~d~~i~vwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~ 301 (440)
+++.|++..+.|++++..+..... .+..+++.+|+|||..|.+|..||.++|||+.... .+..|.+|.++
T Consensus 320 sAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~--------~~a~Fpght~~ 391 (506)
T KOG0289|consen 320 SASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT--------NVAKFPGHTGP 391 (506)
T ss_pred EecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc--------ccccCCCCCCc
Confidence 777888888899999988766654 34568899999999999999999999999997665 67889999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEE
Q 013578 302 VTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWL 381 (440)
Q Consensus 302 v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~ 381 (440)
|..++|+.+|-+|++++.|+.|++||++..... +.+.. . ....+..+.|.+.|.+|+.+ +..++||
T Consensus 392 vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~-------kt~~l-----~-~~~~v~s~~fD~SGt~L~~~-g~~l~Vy 457 (506)
T KOG0289|consen 392 VKAISFSENGYWLATAADDGSVKLWDLRKLKNF-------KTIQL-----D-EKKEVNSLSFDQSGTYLGIA-GSDLQVY 457 (506)
T ss_pred eeEEEeccCceEEEEEecCCeEEEEEehhhccc-------ceeec-----c-ccccceeEEEcCCCCeEEee-cceeEEE
Confidence 999999999999999999999999999965422 21111 1 11257889999999999987 4444444
Q ss_pred EcC----CccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578 382 SVE----TGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA 434 (440)
Q Consensus 382 d~~----~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~ 434 (440)
-.. .+..+..+ ..|.+..+++.|.... .+++++|.|..++++.+
T Consensus 458 ~~~k~~k~W~~~~~~-~~~sg~st~v~Fg~~a--------q~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 458 ICKKKTKSWTEIKEL-ADHSGLSTGVRFGEHA--------QYLASTSMDAILRLYAL 505 (506)
T ss_pred EEecccccceeeehh-hhcccccceeeecccc--------eEEeeccchhheEEeec
Confidence 443 56677777 4788899999999887 89999999999999875
No 63
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=2.2e-30 Score=209.34 Aligned_cols=295 Identities=19% Similarity=0.268 Sum_probs=214.1
Q ss_pred CCCCCCCCCCCCcccCcc---ccccccccCcceeEEEEccCC---CEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCC
Q 013578 65 PHSHSHGDKDQNKRHHPL---DVNTLKGHGDSVTGLCFSSDG---KCLATACADGVIRVHKLDDASSKSFKFLRINLPPG 138 (440)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~---~~~~l~~H~~~V~~l~~s~dg---~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~ 138 (440)
..-..++..|+..+.|.. .++++.||.++|..++|.-.. ..|+++|.|.++++|.++.++... .......+|.
T Consensus 115 ~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~-~~~~~~~GHk 193 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKV-KALKVCRGHK 193 (423)
T ss_pred CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhh-hHHhHhcccc
Confidence 445678899999999976 588899999999988886533 359999999999999998765432 2233344899
Q ss_pred CCCceEEEccCCCeEEEEeecCCcceEEeeccccccc-cccccccCCCCCCceeecccccccceeEEEeecccccccCCC
Q 013578 139 GPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAIS-TNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTAD 217 (440)
Q Consensus 139 ~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (440)
..|.++...+++..+++++.| ..+.+|+...... ..+.............-..........+..+..+...+..++
T Consensus 194 ~~V~sVsv~~sgtr~~SgS~D---~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d 270 (423)
T KOG0313|consen 194 RSVDSVSVDSSGTRFCSGSWD---TMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD 270 (423)
T ss_pred cceeEEEecCCCCeEEeeccc---ceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence 999999999999999999998 6788887222111 111000000000000000000111112222333333333444
Q ss_pred CCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec
Q 013578 218 GSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG 297 (440)
Q Consensus 218 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 297 (440)
.. .+++++.|.+|+.||+.++..+..+.. .....|+.++|..++|++|+.|..|++||.+.+.... ..+++.+
T Consensus 271 ~~-v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~-----v~~s~~g 343 (423)
T KOG0313|consen 271 AT-VIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV-----VSQSLIG 343 (423)
T ss_pred CC-ceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCce-----eEEeeec
Confidence 33 899999999999999999999888876 4568999999999999999999999999998875322 4667899
Q ss_pred cccceEEEEEcCCCC-EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCC
Q 013578 298 HKSAVTWLCFAPNSE-QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS 376 (440)
Q Consensus 298 h~~~v~~~~~~p~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 376 (440)
|+..|.++.|+|... +|++++.|+++++||+++.. .+++...+|...|.++.|+..+-++..|.|+
T Consensus 344 H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k-------------~plydI~~h~DKvl~vdW~~~~~IvSGGaD~ 410 (423)
T KOG0313|consen 344 HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK-------------APLYDIAGHNDKVLSVDWNEGGLIVSGGADN 410 (423)
T ss_pred chhhhhheecCCCCceEEEEEecCCeEEEEEeccCC-------------CcceeeccCCceEEEEeccCCceEEeccCcc
Confidence 999999999999655 68999999999999999643 2456667788889999998766555556699
Q ss_pred EEEEEEc
Q 013578 377 TLQWLSV 383 (440)
Q Consensus 377 ~i~i~d~ 383 (440)
.|+++..
T Consensus 411 ~l~i~~~ 417 (423)
T KOG0313|consen 411 KLRIFKG 417 (423)
T ss_pred eEEEecc
Confidence 9999854
No 64
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.2e-30 Score=201.59 Aligned_cols=247 Identities=19% Similarity=0.319 Sum_probs=200.0
Q ss_pred ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
++..+.+|.++|++++. +|.++|+||.|-+|+|||+..... +.....|.+.|+++.|.+.-.
T Consensus 35 ~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~q-----lg~ll~HagsitaL~F~~~~S----------- 96 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQ-----LGILLSHAGSITALKFYPPLS----------- 96 (362)
T ss_pred ccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhh-----hcceeccccceEEEEecCCcc-----------
Confidence 46788999999999999 689999999999999999987642 344556788999999987532
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL 242 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 242 (440)
...|++|+.||.|.+|+....+++
T Consensus 97 --------------------------------------------------------~shLlS~sdDG~i~iw~~~~W~~~ 120 (362)
T KOG0294|consen 97 --------------------------------------------------------KSHLLSGSDDGHIIIWRVGSWELL 120 (362)
T ss_pred --------------------------------------------------------hhheeeecCCCcEEEEEcCCeEEe
Confidence 016899999999999999999999
Q ss_pred eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCc
Q 013578 243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGT 322 (440)
Q Consensus 243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~ 322 (440)
..++.|...|+.++++|.+++.++.+.|+.+++||+..++.... ..+. ..-+.+.|+|.|.+++.++.+ .
T Consensus 121 ~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v------~~L~---~~at~v~w~~~Gd~F~v~~~~-~ 190 (362)
T KOG0294|consen 121 KSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFV------LNLK---NKATLVSWSPQGDHFVVSGRN-K 190 (362)
T ss_pred eeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcccee------eccC---CcceeeEEcCCCCEEEEEecc-E
Confidence 99999999999999999999999999999999999987763221 1121 222349999999999988876 7
Q ss_pred EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeEE
Q 013578 323 LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITC 402 (440)
Q Consensus 323 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~ 402 (440)
|-+|.+.+.....+.. ....+.++.|-..+.+++.++++.|.+||..+..++..+ .+|...|.+
T Consensus 191 i~i~q~d~A~v~~~i~---------------~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~-~AH~~RVK~ 254 (362)
T KOG0294|consen 191 IDIYQLDNASVFREIE---------------NPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEF-LAHENRVKD 254 (362)
T ss_pred EEEEecccHhHhhhhh---------------ccccceeeeecCCceEEEecCCceEEEeccCCCccceee-ecchhheee
Confidence 8999988654332211 113355677777777777778999999999998888888 599999999
Q ss_pred EEec--CCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 403 MAWA--PKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 403 v~~~--~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
+.+- |++ .+|+|+|+||.|+|||++..
T Consensus 255 i~~~~~~~~--------~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 255 IASYTNPEH--------EYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEecCCc--------eEEEEeccCceEEEEEcccc
Confidence 9854 344 79999999999999999754
No 65
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.4e-30 Score=219.54 Aligned_cols=268 Identities=15% Similarity=0.177 Sum_probs=224.2
Q ss_pred CCCCCCCCCCCCCcccCccc----cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCC
Q 013578 64 KPHSHSHGDKDQNKRHHPLD----VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGG 139 (440)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~----~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~ 139 (440)
...-...+...+.+.+|+.. ++.++--.-+|++..|-+-.+++++|+.|..||||+..+.+ ....+..|..
T Consensus 24 tePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e-----kV~~FeAH~D 98 (794)
T KOG0276|consen 24 TEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE-----KVKTFEAHSD 98 (794)
T ss_pred CCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccce-----eeEEeecccc
Confidence 33334555667778888765 45566678899999999999999999999999999999876 4566778889
Q ss_pred CCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCC
Q 013578 140 PPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGS 219 (440)
Q Consensus 140 ~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (440)
.|.+++.+|...
T Consensus 99 yIR~iavHPt~P-------------------------------------------------------------------- 110 (794)
T KOG0276|consen 99 YIRSIAVHPTLP-------------------------------------------------------------------- 110 (794)
T ss_pred ceeeeeecCCCC--------------------------------------------------------------------
Confidence 999999998754
Q ss_pred eEEEEeeCCceEEEEeCCCC-ceeeeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec
Q 013578 220 TIIASCSEGTDISIWHGKTG-KLLGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG 297 (440)
Q Consensus 220 ~~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 297 (440)
+++++++|-+|++||.+.+ .+.+.+.+|...|.+++|+| |.+.+++++-|++|++|.+.... +..++.+
T Consensus 111 -~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~--------~nfTl~g 181 (794)
T KOG0276|consen 111 -YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH--------PNFTLEG 181 (794)
T ss_pred -eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC--------Cceeeec
Confidence 6788888889999998754 67889999999999999999 67899999999999999997665 7889999
Q ss_pred cccceEEEEEcCCC--CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-
Q 013578 298 HKSAVTWLCFAPNS--EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH- 374 (440)
Q Consensus 298 h~~~v~~~~~~p~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~- 374 (440)
|...|+|+.|-+.| .+|++|+.|.+|+|||.++..|++ ...||...|..+.|+|.-.++++|+
T Consensus 182 HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~--------------TLeGHt~Nvs~v~fhp~lpiiisgsE 247 (794)
T KOG0276|consen 182 HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQ--------------TLEGHTNNVSFVFFHPELPIIISGSE 247 (794)
T ss_pred cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHH--------------HhhcccccceEEEecCCCcEEEEecC
Confidence 99999999998844 699999999999999999887753 3357777799999999999999987
Q ss_pred CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 375 GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 375 ~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
||+++||+..+-++...+. -..+.|+|++-.+.+ +.++.|.+.|.|. .++-..
T Consensus 248 DGTvriWhs~Ty~lE~tLn-~gleRvW~I~~~k~~--------~~i~vG~Deg~i~-v~lgre 300 (794)
T KOG0276|consen 248 DGTVRIWNSKTYKLEKTLN-YGLERVWCIAAHKGD--------GKIAVGFDEGSVT-VKLGRE 300 (794)
T ss_pred CccEEEecCcceehhhhhh-cCCceEEEEeecCCC--------CeEEEeccCCcEE-EEccCC
Confidence 9999999999999988884 567799999999887 6788887666554 344333
No 66
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.2e-29 Score=190.81 Aligned_cols=258 Identities=14% Similarity=0.189 Sum_probs=208.3
Q ss_pred CCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceE
Q 013578 69 SHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAV 144 (440)
Q Consensus 69 ~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v 144 (440)
.+...|+++++|+. +++++.||...|..++.+.|+..+++|+.|+.|.+||++++. ..+...+|.+.|..+
T Consensus 33 ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk-----v~Rr~rgH~aqVNtV 107 (307)
T KOG0316|consen 33 LTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK-----VDRRFRGHLAQVNTV 107 (307)
T ss_pred EEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCe-----eeeecccccceeeEE
Confidence 45578899999975 589999999999999999999999999999999999999986 567888999999999
Q ss_pred EEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEE
Q 013578 145 AFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIAS 224 (440)
Q Consensus 145 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 224 (440)
+|+.+.. .+++
T Consensus 108 ~fNeesS---------------------------------------------------------------------Vv~S 118 (307)
T KOG0316|consen 108 RFNEESS---------------------------------------------------------------------VVAS 118 (307)
T ss_pred EecCcce---------------------------------------------------------------------EEEe
Confidence 9986543 7889
Q ss_pred eeCCceEEEEeCCCC--ceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccce
Q 013578 225 CSEGTDISIWHGKTG--KLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAV 302 (440)
Q Consensus 225 ~~~d~~i~vwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v 302 (440)
|+.|..+++||.++. ++++.+......|.++.++ +..+++|+.||+++.||++.+. ..... ...+|
T Consensus 119 gsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~--------l~sDy--~g~pi 186 (307)
T KOG0316|consen 119 GSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGT--------LSSDY--FGHPI 186 (307)
T ss_pred ccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecce--------eehhh--cCCcc
Confidence 999999999998754 6788887777778777765 6789999999999999998875 33333 34689
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEE
Q 013578 303 TWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWL 381 (440)
Q Consensus 303 ~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~ 381 (440)
+|+.|+++++..+.++.|+++++.|-.+++.+....... .... -..++++.....+++|+ ||.+++|
T Consensus 187 t~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhk-----------n~ey-kldc~l~qsdthV~sgSEDG~Vy~w 254 (307)
T KOG0316|consen 187 TSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHK-----------NMEY-KLDCCLNQSDTHVFSGSEDGKVYFW 254 (307)
T ss_pred eeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccc-----------ccee-eeeeeecccceeEEeccCCceEEEE
Confidence 999999999999999999999999999887764322111 1111 22466777777888877 8999999
Q ss_pred EcCCccchhhhhccccCC-eEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578 382 SVETGKVLDTAEKAHEGE-ITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA 434 (440)
Q Consensus 382 d~~~~~~~~~~~~~h~~~-v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~ 434 (440)
|+.....+..+. .|... |.+++++|.. ..|+++. ++.+..|.-
T Consensus 255 dLvd~~~~sk~~-~~~~v~v~dl~~hp~~--------~~f~~A~-~~~~~~~~~ 298 (307)
T KOG0316|consen 255 DLVDETQISKLS-VVSTVIVTDLSCHPTM--------DDFITAT-GHGDLFWYQ 298 (307)
T ss_pred Eeccceeeeeec-cCCceeEEeeecccCc--------cceeEec-CCceeceee
Confidence 999999998884 56665 8999999987 5566665 444666643
No 67
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=5.6e-29 Score=224.75 Aligned_cols=239 Identities=15% Similarity=0.160 Sum_probs=175.1
Q ss_pred ccccccccCcceeEEEEccC-CCEEEEeeCCCcEEEEecCCCCCcc---eeeEEecCCCCCCCceEEEccCCCeEEEEee
Q 013578 83 DVNTLKGHGDSVTGLCFSSD-GKCLATACADGVIRVHKLDDASSKS---FKFLRINLPPGGPPTAVAFADNATSIVVATH 158 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~d-g~~l~t~s~dg~v~vW~~~~~~~~~---~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~ 158 (440)
++..+.+|.+.|.+++|+|+ +++||||+.||+|+|||+.+..... ........+|...|.+++|+|++..
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~------ 139 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY------ 139 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCe------
Confidence 56789999999999999996 7899999999999999997643210 0112234567778888888876542
Q ss_pred cCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC
Q 013578 159 NLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT 238 (440)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 238 (440)
++++++.|++|++||+++
T Consensus 140 --------------------------------------------------------------iLaSgS~DgtIrIWDl~t 157 (568)
T PTZ00420 140 --------------------------------------------------------------IMCSSGFDSFVNIWDIEN 157 (568)
T ss_pred --------------------------------------------------------------EEEEEeCCCeEEEEECCC
Confidence 567888999999999999
Q ss_pred CceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEE-----EEEcCCCCE
Q 013578 239 GKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTW-----LCFAPNSEQ 313 (440)
Q Consensus 239 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~-----~~~~p~~~~ 313 (440)
++.+..+. +...+.+++|+|+|.+|++++.|+.|+|||++.+. .+..+.+|.+.+.+ ..|++++.+
T Consensus 158 g~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~--------~i~tl~gH~g~~~s~~v~~~~fs~d~~~ 228 (568)
T PTZ00420 158 EKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE--------IASSFHIHDGGKNTKNIWIDGLGGDDNY 228 (568)
T ss_pred CcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc--------EEEEEecccCCceeEEEEeeeEcCCCCE
Confidence 98877775 45679999999999999999999999999998765 56778889876543 335688899
Q ss_pred EEEEeCCC----cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcCCccc
Q 013578 314 IITASKDG----TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVETGKV 388 (440)
Q Consensus 314 l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~~~~~ 388 (440)
|++++.|+ +|+|||++.... .... .....+...+......++|.++++| .|+.|++|++..+..
T Consensus 229 IlTtG~d~~~~R~VkLWDlr~~~~------pl~~-----~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~ 297 (568)
T PTZ00420 229 ILSTGFSKNNMREMKLWDLKNTTS------ALVT-----MSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI 297 (568)
T ss_pred EEEEEcCCCCccEEEEEECCCCCC------ceEE-----EEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE
Confidence 99988774 799999985321 1111 1111112222223335568877776 599999999987753
Q ss_pred hhhhhccccCCeEEEEecCCC
Q 013578 389 LDTAEKAHEGEITCMAWAPKT 409 (440)
Q Consensus 389 ~~~~~~~h~~~v~~v~~~~~~ 409 (440)
...-...+..++.+++|.|+.
T Consensus 298 ~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 298 RKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EeecccccCCCccceEEcccc
Confidence 222222366788999999984
No 68
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.8e-27 Score=179.58 Aligned_cols=308 Identities=15% Similarity=0.211 Sum_probs=223.9
Q ss_pred ccCccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCC----------CCcceeeEEecCCCCCCCceEEEc
Q 013578 78 RHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDA----------SSKSFKFLRINLPPGGPPTAVAFA 147 (440)
Q Consensus 78 ~~~~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~----------~~~~~~~~~~~~~~~~~v~~v~~~ 147 (440)
+..-..+..|+ -+..|++++|+|.|.+.+.|+..+++||-....- ...+....+....|.+.|.+.+|+
T Consensus 20 k~~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws 98 (350)
T KOG0641|consen 20 KKHFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWS 98 (350)
T ss_pred ccceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEec
Confidence 33334455554 4678999999999999999999999999765321 112233445566788999999999
Q ss_pred cCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEee-
Q 013578 148 DNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCS- 226 (440)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~- 226 (440)
|+|..+++++.+.....+.+.. +.. ...+....++.+.+.......... ...+..+|++++
T Consensus 99 ~~geliatgsndk~ik~l~fn~-dt~----------~~~g~dle~nmhdgtirdl~fld~-------~~s~~~il~s~ga 160 (350)
T KOG0641|consen 99 PCGELIATGSNDKTIKVLPFNA-DTC----------NATGHDLEFNMHDGTIRDLAFLDD-------PESGGAILASAGA 160 (350)
T ss_pred CccCeEEecCCCceEEEEeccc-ccc----------cccCcceeeeecCCceeeeEEecC-------CCcCceEEEecCC
Confidence 9999999999884333332221 111 122334444444433222221111 223343666654
Q ss_pred CCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee----c---cc
Q 013578 227 EGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK----G---HK 299 (440)
Q Consensus 227 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----~---h~ 299 (440)
.|..|++-|..+|+..+.+.+|.+.|.++ ++-+|-.+++|+.|.+|++||++... ++..+. + ..
T Consensus 161 gdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~--------~v~~l~~~~~~~gles 231 (350)
T KOG0641|consen 161 GDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNS--------CVNTLDNDFHDGGLES 231 (350)
T ss_pred CcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccc--------eeeeccCcccCCCccc
Confidence 57889999999999999999999988775 56678999999999999999998665 333332 1 23
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEE
Q 013578 300 SAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTL 378 (440)
Q Consensus 300 ~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i 378 (440)
+.|.+++..|.|++|++|-.|....+||++.++.++ ....|...|.++.|+|...||.+++ |..|
T Consensus 232 savaav~vdpsgrll~sg~~dssc~lydirg~r~iq--------------~f~phsadir~vrfsp~a~yllt~syd~~i 297 (350)
T KOG0641|consen 232 SAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQ--------------RFHPHSADIRCVRFSPGAHYLLTCSYDMKI 297 (350)
T ss_pred ceeEEEEECCCcceeeeccCCCceEEEEeeCCceee--------------eeCCCccceeEEEeCCCceEEEEecccceE
Confidence 679999999999999999999999999999775432 2345667799999999999999987 9999
Q ss_pred EEEEcCCc---cchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 379 QWLSVETG---KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 379 ~i~d~~~~---~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
++-|+... ++.......|.+.+..+.|+|.. --+++.+.|.++.+|-++
T Consensus 298 kltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d--------~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 298 KLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQD--------FSFISSSADKTATLWALN 349 (350)
T ss_pred EEeecccchhhcCceEEEEeccCceEEEEecCcc--------ceeeeccCcceEEEeccC
Confidence 99998642 22222224689999999999997 788999999999999875
No 69
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=5.1e-29 Score=227.55 Aligned_cols=308 Identities=18% Similarity=0.210 Sum_probs=224.4
Q ss_pred ccc-CcceeEEEEccCCCEEEEee--CCCcEEEEecCCCCC-------cceeeEEecCCCCCCCceEEEccCCCeEEEEe
Q 013578 88 KGH-GDSVTGLCFSSDGKCLATAC--ADGVIRVHKLDDASS-------KSFKFLRINLPPGGPPTAVAFADNATSIVVAT 157 (440)
Q Consensus 88 ~~H-~~~V~~l~~s~dg~~l~t~s--~dg~v~vW~~~~~~~-------~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~ 157 (440)
-+| +..|.+++.+|||..+|||+ .||.++||+.+.-.. ...+.+.....|.+.|.|+.|+|||++|++++
T Consensus 9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS 88 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS 88 (942)
T ss_pred cccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence 345 56799999999999999999 999999999754211 01223344567889999999999999999999
Q ss_pred ecCCcceEEeeccccccccccccccCCCCCCceeecc---cccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEE
Q 013578 158 HNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEH---HKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIW 234 (440)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vw 234 (440)
.| ..+.+|.... ......-...........|.. ...|... ...+.++|++. ++++++.|++|.+|
T Consensus 89 DD---~~v~iW~~~~-~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~D-------V~Dv~Wsp~~~-~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 89 DD---RLVMIWERAE-IGSGTVFGSTGGAKNVESWKVVSILRGHDSD-------VLDVNWSPDDS-LLVSVSLDNSVIIW 156 (942)
T ss_pred Cc---ceEEEeeecc-cCCcccccccccccccceeeEEEEEecCCCc-------cceeccCCCcc-EEEEecccceEEEE
Confidence 88 6777777664 111111111111112223322 1122222 23344588888 99999999999999
Q ss_pred eCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec------cccceEEEEEc
Q 013578 235 HGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG------HKSAVTWLCFA 308 (440)
Q Consensus 235 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~------h~~~v~~~~~~ 308 (440)
|..+.+.+..+.+|...|..+.|.|-|++||+-+.|++|++|++..-. ..+.+.+ .......+.|+
T Consensus 157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~--------i~k~It~pf~~~~~~T~f~RlSWS 228 (942)
T KOG0973|consen 157 NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWG--------IEKSITKPFEESPLTTFFLRLSWS 228 (942)
T ss_pred ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccce--------eeEeeccchhhCCCcceeeecccC
Confidence 999999999999999999999999999999999999999999964321 2222222 23457889999
Q ss_pred CCCCEEEEEeC----CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC-----CC-----------
Q 013578 309 PNSEQIITASK----DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD-----GK----------- 368 (440)
Q Consensus 309 p~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----g~----------- 368 (440)
|||.+|++.-. -.++.|.+-.+-+. ....-||..++.++.|+|. .+
T Consensus 229 PDG~~las~nA~n~~~~~~~IieR~tWk~--------------~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y 294 (942)
T KOG0973|consen 229 PDGHHLASPNAVNGGKSTIAIIERGTWKV--------------DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYY 294 (942)
T ss_pred CCcCeecchhhccCCcceeEEEecCCcee--------------eeeeecCCCceEEEEeChHHhccccccCCccCCCcce
Confidence 99999988642 23566655432211 1233477778999999872 11
Q ss_pred -EEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 369 -ILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 369 -~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
.+|+|+ |+.|.||.....+++..+..-....|.+++|+||| ..|+.+|.||+|.+..++..
T Consensus 295 ~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG--------~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 295 CIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDG--------FSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred EEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCC--------CeEEEEecCCeEEEEEcchH
Confidence 455666 99999999999988877755567789999999999 89999999999999998754
No 70
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=5.9e-29 Score=223.75 Aligned_cols=250 Identities=15% Similarity=0.120 Sum_probs=184.1
Q ss_pred cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcc--------eeeEEecCCCCCCCceEEEcc-CCCeEEEEeecC
Q 013578 90 HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKS--------FKFLRINLPPGGPPTAVAFAD-NATSIVVATHNL 160 (440)
Q Consensus 90 H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~--------~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~~~ 160 (440)
|-..|+....++|+..+++++.+.....|+...+.... ........+|.+.|.+++|+| ++.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--------- 89 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--------- 89 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC---------
Confidence 45667777778888888888888888888765432100 000112345666777777766 322
Q ss_pred CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC-
Q 013578 161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG- 239 (440)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~- 239 (440)
+|++++.|++|++||+.++
T Consensus 90 ------------------------------------------------------------~LaSgS~DgtIkIWdi~~~~ 109 (493)
T PTZ00421 90 ------------------------------------------------------------KLFTASEDGTIMGWGIPEEG 109 (493)
T ss_pred ------------------------------------------------------------EEEEEeCCCEEEEEecCCCc
Confidence 7889999999999999765
Q ss_pred ------ceeeeeeCCCCcccEEEecCCC-CeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCC
Q 013578 240 ------KLLGNVDTNQLKNNMAAISPNG-RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSE 312 (440)
Q Consensus 240 ------~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 312 (440)
+.+..+.+|...|.+++|+|++ ++|++|+.|+.|+|||+..+. ....+.+|...|.+++|+|+|.
T Consensus 110 ~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~--------~~~~l~~h~~~V~sla~spdG~ 181 (493)
T PTZ00421 110 LTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK--------AVEVIKCHSDQITSLEWNLDGS 181 (493)
T ss_pred cccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe--------EEEEEcCCCCceEEEEEECCCC
Confidence 3466788899999999999985 799999999999999997654 5667888999999999999999
Q ss_pred EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCe-eeeeeEEeCCCCCEEEE-e----cCCEEEEEEcCCc
Q 013578 313 QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGAT-LQYDRLSLSSDGKILAA-T----HGSTLQWLSVETG 386 (440)
Q Consensus 313 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~-~----~~~~i~i~d~~~~ 386 (440)
+|++++.|++|++||++++..+.. ..+|. .....+.|.+++..+++ | .|+.|++||+++.
T Consensus 182 lLatgs~Dg~IrIwD~rsg~~v~t--------------l~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 182 LLCTTSKDKKLNIIDPRDGTIVSS--------------VEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred EEEEecCCCEEEEEECCCCcEEEE--------------EecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence 999999999999999987643211 01111 12345778888776664 3 2689999999876
Q ss_pred cchhhhhc-cccCCeEEEEecCCCCCCCCCcceEEEEee-CCCeEEEEeCCCCC
Q 013578 387 KVLDTAEK-AHEGEITCMAWAPKTIPMGNQQVSVLATSS-VDKKVKLWLAPSLE 438 (440)
Q Consensus 387 ~~~~~~~~-~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~-~Dg~i~vw~~~~~~ 438 (440)
........ .+...+....|++++ .+|++++ .|+.|++|++.+++
T Consensus 248 ~~p~~~~~~d~~~~~~~~~~d~d~--------~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 248 ASPYSTVDLDQSSALFIPFFDEDT--------NLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred CCceeEeccCCCCceEEEEEcCCC--------CEEEEEEeCCCeEEEEEeeCCc
Confidence 53332212 233456667889998 7888877 59999999998765
No 71
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.2e-29 Score=210.14 Aligned_cols=242 Identities=20% Similarity=0.319 Sum_probs=191.7
Q ss_pred CcceeEEEEccCCC--EEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEee
Q 013578 91 GDSVTGLCFSSDGK--CLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMY 168 (440)
Q Consensus 91 ~~~V~~l~~s~dg~--~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~ 168 (440)
.+.|.+++|+|... +.+|+| -.+.||+..+.... +........+.++.|-.||+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~~-----k~~srFk~~v~s~~fR~DG~----------------- 81 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSVR-----KTFSRFKDVVYSVDFRSDGR----------------- 81 (487)
T ss_pred cCcceeEecCCCCCCceEEecc--cEEEEEecchhhhh-----hhHHhhccceeEEEeecCCe-----------------
Confidence 46899999999543 344444 35899988765422 22223346677777766654
Q ss_pred ccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCC
Q 013578 169 GEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN 248 (440)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 248 (440)
++++|...|.|++||+.+...++.+..|
T Consensus 82 ----------------------------------------------------LlaaGD~sG~V~vfD~k~r~iLR~~~ah 109 (487)
T KOG0310|consen 82 ----------------------------------------------------LLAAGDESGHVKVFDMKSRVILRQLYAH 109 (487)
T ss_pred ----------------------------------------------------EEEccCCcCcEEEeccccHHHHHHHhhc
Confidence 7888888999999998877788999999
Q ss_pred CCcccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCC-CEEEEEeCCCcEEEE
Q 013578 249 QLKNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS-EQIITASKDGTLRVW 326 (440)
Q Consensus 249 ~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~~~dg~i~iw 326 (440)
+.++..+.|+|+ +..|++|++|+.+++||+.... ....+.+|++.|.|.+|+|-. ..++|||.||.|++|
T Consensus 110 ~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~--------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~ 181 (487)
T KOG0310|consen 110 QAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY--------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW 181 (487)
T ss_pred cCceeEEEecccCCeEEEecCCCceEEEEEcCCcE--------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence 999999999995 4567788888999999986553 356789999999999999954 578999999999999
Q ss_pred ecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEec
Q 013578 327 NINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWA 406 (440)
Q Consensus 327 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~ 406 (440)
|++.... . ...-.|..+|..+.+-|.|..+|+++++.+++||+.+|..+......|...|+|+++.
T Consensus 182 DtR~~~~--------~------v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~ 247 (487)
T KOG0310|consen 182 DTRSLTS--------R------VVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLA 247 (487)
T ss_pred EeccCCc--------e------eEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEee
Confidence 9985421 1 1112456678899999999999999999999999996655444434599999999999
Q ss_pred CCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 407 PKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 407 ~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
.++ ..|++||-|+.|++|++.+.+
T Consensus 248 s~~--------~rLlS~sLD~~VKVfd~t~~K 271 (487)
T KOG0310|consen 248 SDS--------TRLLSGSLDRHVKVFDTTNYK 271 (487)
T ss_pred cCC--------ceEeecccccceEEEEccceE
Confidence 988 899999999999999977643
No 72
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.3e-29 Score=208.45 Aligned_cols=247 Identities=19% Similarity=0.299 Sum_probs=207.0
Q ss_pred cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC 163 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~ 163 (440)
.+++.-..+.|.+++|-.||++||.|+..|.|+|+|..+. ..++....|..++..+.|+|.+..
T Consensus 61 ~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r-----~iLR~~~ah~apv~~~~f~~~d~t----------- 124 (487)
T KOG0310|consen 61 RKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR-----VILRQLYAHQAPVHVTKFSPQDNT----------- 124 (487)
T ss_pred hhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH-----HHHHHHhhccCceeEEEecccCCe-----------
Confidence 4455567889999999999999999999999999995542 245666788899999999886542
Q ss_pred eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee
Q 013578 164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG 243 (440)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 243 (440)
++++|++|+.+++||+.+.....
T Consensus 125 ---------------------------------------------------------~l~s~sDd~v~k~~d~s~a~v~~ 147 (487)
T KOG0310|consen 125 ---------------------------------------------------------MLVSGSDDKVVKYWDLSTAYVQA 147 (487)
T ss_pred ---------------------------------------------------------EEEecCCCceEEEEEcCCcEEEE
Confidence 78899999999999999988777
Q ss_pred eeeCCCCcccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCc
Q 013578 244 NVDTNQLKNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGT 322 (440)
Q Consensus 244 ~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~ 322 (440)
.+.+|...|.|.+|+|. +..+++|+.||+|++||.+... ..+..+. |..+|..+.+-|.|..+++++.+ .
T Consensus 148 ~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-------~~v~eln-hg~pVe~vl~lpsgs~iasAgGn-~ 218 (487)
T KOG0310|consen 148 ELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-------SRVVELN-HGCPVESVLALPSGSLIASAGGN-S 218 (487)
T ss_pred EecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-------ceeEEec-CCCceeeEEEcCCCCEEEEcCCC-e
Confidence 88999999999999995 5589999999999999998764 1445554 89999999999999999999864 8
Q ss_pred EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeE
Q 013578 323 LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEIT 401 (440)
Q Consensus 323 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~ 401 (440)
|++||+-++..+ ......|...|+|+.+..++..|.+++ |+.+++||+.+.+.+.... -.++|.
T Consensus 219 vkVWDl~~G~ql-------------l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~--~~~pvL 283 (487)
T KOG0310|consen 219 VKVWDLTTGGQL-------------LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK--YPGPVL 283 (487)
T ss_pred EEEEEecCCcee-------------hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee--ccccee
Confidence 999999866432 112223677899999999999888877 9999999999999988874 789999
Q ss_pred EEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 402 CMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 402 ~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
+++.+|++ ..++.|-.||.+.+=+..
T Consensus 284 siavs~dd--------~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 284 SIAVSPDD--------QTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred eEEecCCC--------ceEEEecccceeeeehhh
Confidence 99999998 899999999988776443
No 73
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=4.1e-28 Score=236.08 Aligned_cols=275 Identities=15% Similarity=0.168 Sum_probs=198.6
Q ss_pred CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCcee
Q 013578 112 DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIK 191 (440)
Q Consensus 112 dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (440)
+|.+++|+.................|.+.|.+++|+|+++++++++.+ ..+.+|+......... ....+...
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D---~~I~iwd~~~~~~~~~-----~~~~~~~~ 528 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVN---KKIKIFECESIIKDGR-----DIHYPVVE 528 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCC---CEEEEEECCccccccc-----ccccceEE
Confidence 677888888754322111111234478899999999999999999887 5677777543210000 00000000
Q ss_pred ecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecC-CCCeEEEEecC
Q 013578 192 WEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISP-NGRFLAAAAFT 270 (440)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d 270 (440)
.. .......+.+.+....++++++.|++|++||+.+++.+..+..|...|.+++|+| ++.+|++|+.|
T Consensus 529 ~~-----------~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D 597 (793)
T PLN00181 529 LA-----------SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDD 597 (793)
T ss_pred ec-----------ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCC
Confidence 00 0011112233443333899999999999999999999999999999999999997 78999999999
Q ss_pred CCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEc-CCCCEEEEEeCCCcEEEEecCccccccCCCCcccccccccc
Q 013578 271 ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFA-PNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLL 349 (440)
Q Consensus 271 g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 349 (440)
|.|++||++.+. .+..+..+ ..|.++.|+ +++.+|++|+.||.|++||++.... +..
T Consensus 598 g~v~iWd~~~~~--------~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~-------------~~~ 655 (793)
T PLN00181 598 GSVKLWSINQGV--------SIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL-------------PLC 655 (793)
T ss_pred CEEEEEECCCCc--------EEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc-------------cce
Confidence 999999997654 44555543 679999995 5789999999999999999985421 111
Q ss_pred CCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcCCc------cchhhhhccccCCeEEEEecCCCCCCCCCcceEEEE
Q 013578 350 DSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVETG------KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLAT 422 (440)
Q Consensus 350 ~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~~~------~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t 422 (440)
...+|...|..+.|. ++.+|+++ .|+.|++||+..+ +.+..+ .+|...+.+++|+|++ .+|++
T Consensus 656 ~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~-~gh~~~i~~v~~s~~~--------~~las 725 (793)
T PLN00181 656 TMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF-MGHTNVKNFVGLSVSD--------GYIAT 725 (793)
T ss_pred EecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE-cCCCCCeeEEEEcCCC--------CEEEE
Confidence 223566778899997 56666665 5999999999753 455566 5899999999999998 89999
Q ss_pred eeCCCeEEEEeCCCC
Q 013578 423 SSVDKKVKLWLAPSL 437 (440)
Q Consensus 423 ~~~Dg~i~vw~~~~~ 437 (440)
|+.|+.|++|+....
T Consensus 726 gs~D~~v~iw~~~~~ 740 (793)
T PLN00181 726 GSETNEVFVYHKAFP 740 (793)
T ss_pred EeCCCEEEEEECCCC
Confidence 999999999997643
No 74
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=1.6e-28 Score=203.49 Aligned_cols=263 Identities=16% Similarity=0.263 Sum_probs=192.4
Q ss_pred cccccccCcceeEEEEccCC-CEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 84 VNTLKGHGDSVTGLCFSSDG-KCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg-~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
+...--|.+.|+.+++-|.. ..+||.+..+.|.|||......... ... .+.|+ ..+.+...
T Consensus 117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~------------~~~-~~~Pd--l~L~gH~~--- 178 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPK------------ASG-ECRPD--LRLKGHEK--- 178 (422)
T ss_pred EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccc------------ccc-cCCCc--eEEEeecc---
Confidence 33344699999999999955 5677788899999999875432210 000 22222 11111110
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc--
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK-- 240 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-- 240 (440)
.+....| ++.....+++++.|++|++||+....
T Consensus 179 -----------------------eg~glsW----------------------n~~~~g~Lls~~~d~~i~lwdi~~~~~~ 213 (422)
T KOG0264|consen 179 -----------------------EGYGLSW----------------------NRQQEGTLLSGSDDHTICLWDINAESKE 213 (422)
T ss_pred -----------------------ccccccc----------------------ccccceeEeeccCCCcEEEEeccccccC
Confidence 0001112 22222379999999999999987542
Q ss_pred -----eeeeeeCCCCcccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC-CCCE
Q 013578 241 -----LLGNVDTNQLKNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP-NSEQ 313 (440)
Q Consensus 241 -----~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~ 313 (440)
....+..|...|..++|++. ..+|++++.|+.+.|||+|.... .......+|.+.|+|++|+| ++..
T Consensus 214 ~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~------~~~~~~~ah~~~vn~~~fnp~~~~i 287 (422)
T KOG0264|consen 214 DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS------KPSHSVKAHSAEVNCVAFNPFNEFI 287 (422)
T ss_pred CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC------CCcccccccCCceeEEEeCCCCCce
Confidence 34567889999999999994 56788899999999999985211 25667788999999999999 5567
Q ss_pred EEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEE-ecCCEEEEEEcCCccchh-
Q 013578 314 IITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAA-THGSTLQWLSVETGKVLD- 390 (440)
Q Consensus 314 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~-~~~~~i~i~d~~~~~~~~- 390 (440)
|||||.|++|.+||+|+... +++...+|...|.++.|||+.. .||+ |.|+.+.+||+..-...+
T Consensus 288 lAT~S~D~tV~LwDlRnL~~-------------~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~ 354 (422)
T KOG0264|consen 288 LATGSADKTVALWDLRNLNK-------------PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS 354 (422)
T ss_pred EEeccCCCcEEEeechhccc-------------CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC
Confidence 89999999999999996432 5667788999999999999876 5555 459999999985432111
Q ss_pred ------------hhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 391 ------------TAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 391 ------------~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
-+..||...|..+.|+|+.+ ..+++.++|+.+.||++.
T Consensus 355 ~eda~dgppEllF~HgGH~~kV~DfsWnp~eP-------W~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 355 PEDAEDGPPELLFIHGGHTAKVSDFSWNPNEP-------WTIASVAEDNILQIWQMA 404 (422)
T ss_pred hhhhccCCcceeEEecCcccccccccCCCCCC-------eEEEEecCCceEEEeecc
Confidence 12268999999999999975 788999999999999987
No 75
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=6.4e-28 Score=200.05 Aligned_cols=292 Identities=22% Similarity=0.316 Sum_probs=218.4
Q ss_pred CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCC-eEEEEeecCCcceEEeec
Q 013578 91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNAT-SIVVATHNLSGCSLYMYG 169 (440)
Q Consensus 91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~~~~~~~~~~~~ 169 (440)
.+.|+++.|+|....|++|+.||+++||.++...... +....-...+|.+.+|.|+|. .+++++.. ..++.|+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~---lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr---ky~ysyD 286 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPK---LQSIHLEKFPIQKAEFAPNGHSVIFTSGRR---KYLYSYD 286 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChh---heeeeeccCccceeeecCCCceEEEecccc---eEEEEee
Confidence 5789999999999999999999999999998765542 233333457899999999999 66666554 6778888
Q ss_pred cccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCC
Q 013578 170 EEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQ 249 (440)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 249 (440)
........-... .+...+.+ ...-.+++++ +++..+..|.|.+....+++.+..++. .
T Consensus 287 le~ak~~k~~~~--------------~g~e~~~~------e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~Ki-e 344 (514)
T KOG2055|consen 287 LETAKVTKLKPP--------------YGVEEKSM------ERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKI-E 344 (514)
T ss_pred ccccccccccCC--------------CCcccchh------heeEecCCCC-eEEEcccCceEEeehhhhhhhhheeee-c
Confidence 755422111110 00110000 0111267777 899999999999999999999988876 5
Q ss_pred CcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccce--EEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578 250 LKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAV--TWLCFAPNSEQIITASKDGTLRVWN 327 (440)
Q Consensus 250 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v--~~~~~~p~~~~l~s~~~dg~i~iwd 327 (440)
+.+..++|+.+++.|++.+.+|.|.+||++... +++.+.. .+.| ++++.++++.+||+|+..|.|.|||
T Consensus 345 G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~--------~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd 415 (514)
T KOG2055|consen 345 GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNS--------CLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYD 415 (514)
T ss_pred cEEeeEEEecCCcEEEEEcCCceEEEEecCCcc--------eEEEEee-cCccceeeeeecCCCceEEeccCcceEEEec
Confidence 678999999999999999999999999998764 5665553 3334 5677789999999999999999999
Q ss_pred cCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec---CCEEEEEEcCCccchhhhh--ccccCCeEE
Q 013578 328 INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH---GSTLQWLSVETGKVLDTAE--KAHEGEITC 402 (440)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---~~~i~i~d~~~~~~~~~~~--~~h~~~v~~ 402 (440)
.++...- .-+.|+.....-...|+.+.|++|+++||.++ .+.+++..+.+......+. ...-+.|+|
T Consensus 416 ~~s~~~s--------~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc 487 (514)
T KOG2055|consen 416 GNSCFAS--------TNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTC 487 (514)
T ss_pred cchhhcc--------CCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEE
Confidence 8753221 11223333344456689999999999999876 5789999888877665543 123357999
Q ss_pred EEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 403 MAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 403 v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
|+|+|.+ .+|+.|..+|.+.+|.+.
T Consensus 488 ~aFSP~s--------G~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 488 MAFSPNS--------GYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEecCCC--------ceEEeecCCCceeeEeec
Confidence 9999988 799999999999999874
No 76
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1e-27 Score=214.96 Aligned_cols=252 Identities=19% Similarity=0.266 Sum_probs=199.1
Q ss_pred cccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEe
Q 013578 88 KGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYM 167 (440)
Q Consensus 88 ~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~ 167 (440)
.+|+..-+.|+|.|+|++|+|++.||.|++|+......++. .+. .++..|.+++-
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~-ti~---~~g~~v~~ia~--------------------- 64 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE-TID---ISGELVSSIAC--------------------- 64 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc-hhh---ccCceeEEEee---------------------
Confidence 47999999999999999999999999999999876532110 000 02222222221
Q ss_pred eccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeC
Q 013578 168 YGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDT 247 (440)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 247 (440)
.+. +|++|+.+++|.+|...+++.-..+..
T Consensus 65 -------------------------------------------------~s~-~f~~~s~~~tv~~y~fps~~~~~iL~R 94 (933)
T KOG1274|consen 65 -------------------------------------------------YSN-HFLTGSEQNTVLRYKFPSGEEDTILAR 94 (933)
T ss_pred -------------------------------------------------ccc-ceEEeeccceEEEeeCCCCCccceeee
Confidence 111 799999999999999988876555555
Q ss_pred CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN 327 (440)
Q Consensus 248 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd 327 (440)
..-++++++++-+|+++|.|+.|-.|++-++.... ....+++|.++|.++.|+|++.+||+.+-||.|++||
T Consensus 95 ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s--------~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 95 FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS--------QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred eeccceEEEEecCCcEEEeecCceeEEEEeccccc--------hheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 56789999999999999999999999999987665 6778999999999999999999999999999999999
Q ss_pred cCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC-CCEEEEecCCEEEEEEcCCccchhhhhcccc-CCeEEEEe
Q 013578 328 INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD-GKILAATHGSTLQWLSVETGKVLDTAEKAHE-GEITCMAW 405 (440)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~-~~v~~v~~ 405 (440)
+..+.+........+.... .....+..++|+|+ |.+++.+.++.|.+|+..+++....+...+. ..+.++.|
T Consensus 167 ~~~~~~~~tl~~v~k~n~~------~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~w 240 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEF------ILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQW 240 (933)
T ss_pred cccchhhhhcccCCccccc------cccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEE
Confidence 9987665443333222211 11345778999999 5566678899999999999998877754443 34999999
Q ss_pred cCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 406 APKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 406 ~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
+|+| .|||+++.||.|.|||.++
T Consensus 241 sPnG--------~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 241 SPNG--------KYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cCCC--------cEEeeeccCCcEEEEeccc
Confidence 9999 9999999999999999985
No 77
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.4e-28 Score=202.51 Aligned_cols=267 Identities=22% Similarity=0.234 Sum_probs=207.3
Q ss_pred cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC 163 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~ 163 (440)
+..+..|.-+|.|++++||+++.++++.||+|.=|++.++..... ... . ..|....+.|-.
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~-i~~----~-~ev~k~~~~~~k------------- 195 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRY-IIE----R-DEVLKSHGNPLK------------- 195 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCccccc-ccc----c-chhhhhccCCCC-------------
Confidence 456778999999999999999999999999999999987753210 000 0 011000010000
Q ss_pred eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee
Q 013578 164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG 243 (440)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 243 (440)
..+ +.|....+.. +.++||+ +|++|+.|..|.||+..+.+.++
T Consensus 196 --------------------------~~r---~~h~keil~~-------avS~Dgk-ylatgg~d~~v~Iw~~~t~ehv~ 238 (479)
T KOG0299|consen 196 --------------------------ESR---KGHVKEILTL-------AVSSDGK-YLATGGRDRHVQIWDCDTLEHVK 238 (479)
T ss_pred --------------------------ccc---ccccceeEEE-------EEcCCCc-EEEecCCCceEEEecCcccchhh
Confidence 000 1222222222 2377887 99999999999999999999999
Q ss_pred eeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcE
Q 013578 244 NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTL 323 (440)
Q Consensus 244 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i 323 (440)
.+.+|...|.+++|-.....|++++.|+.|++|++.... .+.++.+|++.|.+|.....++.+..|+.|+++
T Consensus 239 ~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s--------~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~ 310 (479)
T KOG0299|consen 239 VFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS--------YVETLYGHQDGVLGIDALSRERCVTVGGRDRTV 310 (479)
T ss_pred cccccccceeeeeeecCccceeeeecCCceEEEehhHhH--------HHHHHhCCccceeeechhcccceEEecccccee
Confidence 999999999999999999999999999999999996554 678899999999999998888888888899999
Q ss_pred EEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhcccc------
Q 013578 324 RVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHE------ 397 (440)
Q Consensus 324 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~------ 397 (440)
++|++.....+ ...++...+.|++|-.+..++..+++|.|.+|++...+++.....+|.
T Consensus 311 rlwKi~eesql---------------ifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~ 375 (479)
T KOG0299|consen 311 RLWKIPEESQL---------------IFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELD 375 (479)
T ss_pred EEEecccccee---------------eeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCcc
Confidence 99999643222 112335567889999888888888899999999999988877655553
Q ss_pred -----CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 398 -----GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 398 -----~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
.-|++++..|.. .++++|+.+|.||+|.+..+
T Consensus 376 ~~~~~~Witsla~i~~s--------dL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 376 PVNGNFWITSLAVIPGS--------DLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ccccccceeeeEecccC--------ceEEecCCCCceEEEEecCC
Confidence 158899999987 89999999999999999876
No 78
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.7e-28 Score=186.26 Aligned_cols=188 Identities=18% Similarity=0.297 Sum_probs=156.0
Q ss_pred EEEEeeCCceEEEEeCCC-CceeeeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc
Q 013578 221 IIASCSEGTDISIWHGKT-GKLLGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH 298 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h 298 (440)
.+++++.||++++||+.. ..++..++.|...|.++.|++ +++.+++++-|++|++|+....+ .+.++.+|
T Consensus 75 ~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~--------Sv~Tf~gh 146 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN--------SVQTFNGH 146 (311)
T ss_pred eEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc--------ceEeecCC
Confidence 788899999999999653 357888999999999999998 56677888999999999987665 68889999
Q ss_pred ccceEEEEEcC-CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEec-C
Q 013578 299 KSAVTWLCFAP-NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATH-G 375 (440)
Q Consensus 299 ~~~v~~~~~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~-~ 375 (440)
...|...+|+| ..+.++++|.|+++++||++.... .. ....|..++.++.|+.-.. .|++|+ |
T Consensus 147 ~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk-------~~-------~i~ah~~Eil~cdw~ky~~~vl~Tg~vd 212 (311)
T KOG0277|consen 147 NSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK-------FM-------SIEAHNSEILCCDWSKYNHNVLATGGVD 212 (311)
T ss_pred ccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc-------ee-------EEEeccceeEeecccccCCcEEEecCCC
Confidence 99999999999 567899999999999999984321 11 1234556789999998665 556655 9
Q ss_pred CEEEEEEcCCcc-chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 376 STLQWLSVETGK-VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 376 ~~i~i~d~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
+.|+.||++.-+ ++..+ .+|.-.|..+.|+|... .+|++++.|-++||||...+.
T Consensus 213 ~~vr~wDir~~r~pl~eL-~gh~~AVRkvk~Sph~~-------~lLaSasYDmT~riw~~~~~d 268 (311)
T KOG0277|consen 213 NLVRGWDIRNLRTPLFEL-NGHGLAVRKVKFSPHHA-------SLLASASYDMTVRIWDPERQD 268 (311)
T ss_pred ceEEEEehhhccccceee-cCCceEEEEEecCcchh-------hHhhhccccceEEecccccch
Confidence 999999998876 45556 79999999999999752 689999999999999998654
No 79
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=9.4e-28 Score=188.42 Aligned_cols=271 Identities=17% Similarity=0.216 Sum_probs=210.4
Q ss_pred CCCCCCCCCCCCCCCCcccCcc-----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecC
Q 013578 61 SHSKPHSHSHGDKDQNKRHHPL-----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINL 135 (440)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~ 135 (440)
..+.-...+++..|+.+.+|.. ....++||.++|..+.|.+|++.|+++|.|++|+.||.++++ ..+...
T Consensus 55 F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~-----~~rk~k 129 (338)
T KOG0265|consen 55 FHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGK-----RIRKHK 129 (338)
T ss_pred ECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccce-----eeehhc
Confidence 3445556788899999988873 356788999999999999999999999999999999999886 445666
Q ss_pred CCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccC
Q 013578 136 PPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGT 215 (440)
Q Consensus 136 ~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (440)
.|..-|.++.-..-|..++..+.+ ...+.+|+......... ....+......+.
T Consensus 130 ~h~~~vNs~~p~rrg~~lv~Sgsd--D~t~kl~D~R~k~~~~t------------------------~~~kyqltAv~f~ 183 (338)
T KOG0265|consen 130 GHTSFVNSLDPSRRGPQLVCSGSD--DGTLKLWDIRKKEAIKT------------------------FENKYQLTAVGFK 183 (338)
T ss_pred cccceeeecCccccCCeEEEecCC--CceEEEEeecccchhhc------------------------cccceeEEEEEec
Confidence 777888888866667777766665 46677776654321111 1111111111223
Q ss_pred CCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee
Q 013578 216 ADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL 295 (440)
Q Consensus 216 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 295 (440)
..+. .+.+|+-|+.|++||++.++.+..+.+|...|+.+..+++|.++.+-+.|.++++||++.-.. ..+++..+
T Consensus 184 d~s~-qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p----~~R~v~if 258 (338)
T KOG0265|consen 184 DTSD-QVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP----SQRCVKIF 258 (338)
T ss_pred cccc-ceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCC----CCceEEEe
Confidence 3333 789999999999999999999999999999999999999999999999999999999976542 22356667
Q ss_pred ecccc----ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE
Q 013578 296 KGHKS----AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA 371 (440)
Q Consensus 296 ~~h~~----~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 371 (440)
.+|.. ....++|+|+++.+..|+.|..+.+||...... ++...+|...|.+++|+|...+|.
T Consensus 259 ~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~--------------lyklpGh~gsvn~~~Fhp~e~iil 324 (338)
T KOG0265|consen 259 QGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRI--------------LYKLPGHYGSVNEVDFHPTEPIIL 324 (338)
T ss_pred ecchhhhhhhcceeeccCCCCccccccccceEEEeecccccE--------------EEEcCCcceeEEEeeecCCCcEEE
Confidence 66543 346789999999999999999999999875433 345568889999999999999888
Q ss_pred Ee-cCCEEEEE
Q 013578 372 AT-HGSTLQWL 381 (440)
Q Consensus 372 ~~-~~~~i~i~ 381 (440)
++ +|.+|++=
T Consensus 325 s~~sdk~i~lg 335 (338)
T KOG0265|consen 325 SCSSDKTIYLG 335 (338)
T ss_pred EeccCceeEee
Confidence 75 48988874
No 80
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=1.4e-27 Score=192.26 Aligned_cols=262 Identities=18% Similarity=0.222 Sum_probs=197.0
Q ss_pred EecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccc
Q 013578 132 RINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASA 211 (440)
Q Consensus 132 ~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (440)
..+..|..+|.+++.+|+.+.+++++.|. .-++|+....... -....|...+. +
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD---~AflW~~~~ge~~----------------~eltgHKDSVt-------~ 111 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDD---LAFLWDISTGEFA----------------GELTGHKDSVT-------C 111 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCc---eEEEEEccCCcce----------------eEecCCCCceE-------E
Confidence 45667889999999999888888888773 3444544333100 01122222233 3
Q ss_pred cccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeee
Q 013578 212 TYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTS 291 (440)
Q Consensus 212 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 291 (440)
+.|+.+|. +|++|..+|.|+||+..++.....+......+.-+.|+|.+..|+.|+.||.+-+|.+.... .
T Consensus 112 ~~Fshdgt-lLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~--------~ 182 (399)
T KOG0296|consen 112 CSFSHDGT-LLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA--------L 182 (399)
T ss_pred EEEccCce-EEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc--------e
Confidence 34478888 99999999999999999999888887666778889999999999999999999999997643 6
Q ss_pred eeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCC----ccccccc---------------------
Q 013578 292 VMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPK----TLKVLPI--------------------- 346 (440)
Q Consensus 292 ~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~--------------------- 346 (440)
...+.||..++++=.|.|+|+.++++..||+|++||..++..+..... ....+..
T Consensus 183 ~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~ 262 (399)
T KOG0296|consen 183 CKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNN 262 (399)
T ss_pred eeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEcc
Confidence 778999999999999999999999999999999999998865432110 0000000
Q ss_pred ------------cccCCCCCee---eeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCC
Q 013578 347 ------------PLLDSNGATL---QYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTI 410 (440)
Q Consensus 347 ------------~~~~~~~~~~---~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~ 410 (440)
.......+.. .|..+.++..-++.|+|+ ||+|.|||....++....+ |...|+.+.|-++
T Consensus 263 ~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~--he~~V~~l~w~~t-- 338 (399)
T KOG0296|consen 263 GSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE--HEDGVTKLKWLNT-- 338 (399)
T ss_pred ccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc--CCCceEEEEEcCc--
Confidence 0000001111 223344555566778887 9999999999999888875 9999999999995
Q ss_pred CCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 411 PMGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 411 ~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
.+|++++.||.|+.||.++|+.
T Consensus 339 -------~~l~t~c~~g~v~~wDaRtG~l 360 (399)
T KOG0296|consen 339 -------DYLLTACANGKVRQWDARTGQL 360 (399)
T ss_pred -------chheeeccCceEEeeeccccce
Confidence 6999999999999999999864
No 81
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=8.8e-27 Score=201.70 Aligned_cols=246 Identities=25% Similarity=0.445 Sum_probs=192.5
Q ss_pred CCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeeccccccc
Q 013578 135 LPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYG 214 (440)
Q Consensus 135 ~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (440)
.+|..+|.+++|+|+++.+++++.+ ..+.+|+........ . ...+... ...+.+
T Consensus 6 ~~h~~~i~~~~~~~~~~~l~~~~~~---g~i~i~~~~~~~~~~-------------~---~~~~~~~-------i~~~~~ 59 (289)
T cd00200 6 KGHTGGVTCVAFSPDGKLLATGSGD---GTIKVWDLETGELLR-------------T---LKGHTGP-------VRDVAA 59 (289)
T ss_pred cccCCCEEEEEEcCCCCEEEEeecC---cEEEEEEeeCCCcEE-------------E---EecCCcc-------eeEEEE
Confidence 3677999999999999999998865 466666554321000 0 0001111 113334
Q ss_pred CCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee
Q 013578 215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ 294 (440)
Q Consensus 215 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 294 (440)
.++++ .+++++.++.|++||+.+++.+..+..+...+.++.|+++++++++++.+|.|++||+...+ ....
T Consensus 60 ~~~~~-~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~ 130 (289)
T cd00200 60 SADGT-YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK--------CLTT 130 (289)
T ss_pred CCCCC-EEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE--------EEEE
Confidence 66765 88999999999999999888888888888899999999999999888889999999987443 4566
Q ss_pred eeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec
Q 013578 295 LKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH 374 (440)
Q Consensus 295 ~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 374 (440)
+..|...|.+++|+|++.++++++.|+.|++||++....... ...+...+.++.|+|+++.++++.
T Consensus 131 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~--------------~~~~~~~i~~~~~~~~~~~l~~~~ 196 (289)
T cd00200 131 LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT--------------LTGHTGEVNSVAFSPDGEKLLSSS 196 (289)
T ss_pred eccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccccee--------------EecCccccceEEECCCcCEEEEec
Confidence 678999999999999999888888899999999985433211 113344688999999997777655
Q ss_pred -CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 375 -GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 375 -~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
++.+++||..+++.+..+ ..|...+.++.|+|++ .++++++.||.|++|++.+++
T Consensus 197 ~~~~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~--------~~~~~~~~~~~i~i~~~~~~~ 252 (289)
T cd00200 197 SDGTIKLWDLSTGKCLGTL-RGHENGVNSVAFSPDG--------YLLASGSEDGTIRVWDLRTGE 252 (289)
T ss_pred CCCcEEEEECCCCceecch-hhcCCceEEEEEcCCC--------cEEEEEcCCCcEEEEEcCCce
Confidence 999999999999888887 4788899999999987 788888889999999998654
No 82
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.1e-27 Score=195.99 Aligned_cols=267 Identities=17% Similarity=0.250 Sum_probs=200.8
Q ss_pred CCCCCCCCCCCCcccCcc-------ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCC
Q 013578 65 PHSHSHGDKDQNKRHHPL-------DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPP 137 (440)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~-------~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~ 137 (440)
-+..++++.|.+.-+|.. ..+++.||..+|..+.||||.++|++|+.|..+++||+.++... .....++
T Consensus 236 GkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~----~~y~~~~ 311 (519)
T KOG0293|consen 236 GKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLR----HLYPSGL 311 (519)
T ss_pred CeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhh----hhcccCc
Confidence 344566666666665533 36789999999999999999999999999999999999988642 2222335
Q ss_pred CCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCC
Q 013578 138 GGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTAD 217 (440)
Q Consensus 138 ~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (440)
+..+.+++|.|||..+++++.+ ..+..|+...... ..|..... .++ ..+...+|
T Consensus 312 ~~S~~sc~W~pDg~~~V~Gs~d---r~i~~wdlDgn~~--------------~~W~gvr~--~~v-------~dlait~D 365 (519)
T KOG0293|consen 312 GFSVSSCAWCPDGFRFVTGSPD---RTIIMWDLDGNIL--------------GNWEGVRD--PKV-------HDLAITYD 365 (519)
T ss_pred CCCcceeEEccCCceeEecCCC---CcEEEecCCcchh--------------hccccccc--cee-------EEEEEcCC
Confidence 6889999999999999999988 6777787765431 12222111 111 12233788
Q ss_pred CCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec
Q 013578 218 GSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG 297 (440)
Q Consensus 218 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 297 (440)
|+ .+++.+.|..|++++.++......+. ...+++++++|.+++++++--.+..|++||+.... .+..+.|
T Consensus 366 gk-~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~--------lv~kY~G 435 (519)
T KOG0293|consen 366 GK-YVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENK--------LVRKYFG 435 (519)
T ss_pred Cc-EEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhh--------HHHHhhc
Confidence 88 66666789999999998776655444 35689999999999999999999999999997544 6777888
Q ss_pred cccc--eEEEEEcC-CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEe
Q 013578 298 HKSA--VTWLCFAP-NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAAT 373 (440)
Q Consensus 298 h~~~--v~~~~~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~ 373 (440)
|... |..-+|-- +..++++||+|+.|+||+..++..+ ....||...|++++|+|... .+|++
T Consensus 436 hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll--------------~~LsGHs~~vNcVswNP~~p~m~ASa 501 (519)
T KOG0293|consen 436 HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLL--------------AVLSGHSKTVNCVSWNPADPEMFASA 501 (519)
T ss_pred ccccceEEEeccCCCCcceEEecCCCceEEEEEccCCcee--------------EeecCCcceeeEEecCCCCHHHhhcc
Confidence 8754 33344543 4578999999999999999876543 34468888899999999877 45554
Q ss_pred -cCCEEEEEEcCC
Q 013578 374 -HGSTLQWLSVET 385 (440)
Q Consensus 374 -~~~~i~i~d~~~ 385 (440)
+||+|+||-...
T Consensus 502 sDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 502 SDDGTIRIWGPSD 514 (519)
T ss_pred CCCCeEEEecCCc
Confidence 489999997654
No 83
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.9e-26 Score=174.03 Aligned_cols=255 Identities=16% Similarity=0.239 Sum_probs=186.4
Q ss_pred cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccC----CCeEEEEeec
Q 013578 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADN----ATSIVVATHN 159 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~----~~~l~~~~~~ 159 (440)
.+.-+.|.+.|.|.+|||+|++|+||+.|++|++.-++.......-.-..+.-|.+.|..++|..+ +..|++++..
T Consensus 82 ~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag 161 (350)
T KOG0641|consen 82 CKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG 161 (350)
T ss_pred eeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC
Confidence 445567999999999999999999999999999988766544322222334457799999999754 3344444333
Q ss_pred CCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC
Q 013578 160 LSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG 239 (440)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 239 (440)
.+.|++-+..+.... ....+|... .....+-+|- ++++|+.|.+|++||++-.
T Consensus 162 --dc~iy~tdc~~g~~~----------------~a~sghtgh--------ilalyswn~~-m~~sgsqdktirfwdlrv~ 214 (350)
T KOG0641|consen 162 --DCKIYITDCGRGQGF----------------HALSGHTGH--------ILALYSWNGA-MFASGSQDKTIRFWDLRVN 214 (350)
T ss_pred --cceEEEeecCCCCcc----------------eeecCCccc--------EEEEEEecCc-EEEccCCCceEEEEeeecc
Confidence 467777665554211 111122221 1122233444 8999999999999999988
Q ss_pred ceeeeeeC-------CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCC
Q 013578 240 KLLGNVDT-------NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSE 312 (440)
Q Consensus 240 ~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 312 (440)
.++..+.. ....|.++++.|.|++|++|-.|....+||++.+. .++.+..|...|.|+.|+|...
T Consensus 215 ~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r--------~iq~f~phsadir~vrfsp~a~ 286 (350)
T KOG0641|consen 215 SCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR--------MIQRFHPHSADIRCVRFSPGAH 286 (350)
T ss_pred ceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc--------eeeeeCCCccceeEEEeCCCce
Confidence 88877642 23568899999999999999999999999998876 7889999999999999999999
Q ss_pred EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-ecCCEEEEEEc
Q 013578 313 QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-THGSTLQWLSV 383 (440)
Q Consensus 313 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~i~i~d~ 383 (440)
++++++.|..|++-|++..- .. +++......|...+..+.|.|..--+++ +.|.++.+|-+
T Consensus 287 yllt~syd~~ikltdlqgdl--------a~--el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 287 YLLTCSYDMKIKLTDLQGDL--------AH--ELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred EEEEecccceEEEeecccch--------hh--cCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence 99999999999999997421 11 1122233345556778999998765554 55999999965
No 84
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.2e-28 Score=216.87 Aligned_cols=245 Identities=18% Similarity=0.263 Sum_probs=196.8
Q ss_pred ceeEEEEcc-CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccc
Q 013578 93 SVTGLCFSS-DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEE 171 (440)
Q Consensus 93 ~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~ 171 (440)
.+..+.|.. +.++|||++..|.|.+||+...... +.+..+..|...+.++.|++....
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rn--k~l~~f~EH~Rs~~~ldfh~tep~------------------- 147 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRN--KLLTVFNEHERSANKLDFHSTEPN------------------- 147 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccc--hhhhHhhhhccceeeeeeccCCcc-------------------
Confidence 455667765 5689999999999999999863211 234566788899999999875331
Q ss_pred cccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCc
Q 013578 172 KAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLK 251 (440)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 251 (440)
+|++|+.||+|++||++..+...++......
T Consensus 148 -------------------------------------------------iliSGSQDg~vK~~DlR~~~S~~t~~~nSES 178 (839)
T KOG0269|consen 148 -------------------------------------------------ILISGSQDGTVKCWDLRSKKSKSTFRSNSES 178 (839)
T ss_pred -------------------------------------------------EEEecCCCceEEEEeeecccccccccccchh
Confidence 8999999999999999999888888888889
Q ss_pred ccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q 013578 252 NNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINV 330 (440)
Q Consensus 252 v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~ 330 (440)
|+.++|+| .+..|+++.+.|.+++||++... ++...+.+|.++|.|+.|+|++.+|||||+|+.|+|||+.+
T Consensus 179 iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~-------r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~ 251 (839)
T KOG0269|consen 179 IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD-------RCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTD 251 (839)
T ss_pred hhceeeccCCCceEEEecCCceEEEeeccCch-------hHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccC
Confidence 99999999 57899999999999999998765 46778899999999999999999999999999999999985
Q ss_pred cccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCE-EEEe---cCCEEEEEEcCCccchhhhhccccCCeEEEEec
Q 013578 331 RYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKI-LAAT---HGSTLQWLSVETGKVLDTAEKAHEGEITCMAWA 406 (440)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~---~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~ 406 (440)
.... .... -....++.++.|-|..++ ||++ .|-.|+|||++..-........|...++.++|.
T Consensus 252 ~~~~-----~~~t--------InTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~ 318 (839)
T KOG0269|consen 252 SRAK-----PKHT--------INTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWD 318 (839)
T ss_pred CCcc-----ceeE--------EeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceecc
Confidence 4221 1111 112356889999999875 4544 378999999998876665556899999999997
Q ss_pred CCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578 407 PKTIPMGNQQVSVLATSSVDKKVKLWLA 434 (440)
Q Consensus 407 ~~~~~~~~~~~~~l~t~~~Dg~i~vw~~ 434 (440)
... ...|.+++.||+|..-.+
T Consensus 319 ~~d-------~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 319 SGD-------RINLWSCSKDGTVLQHLF 339 (839)
T ss_pred CCC-------ceeeEeecCccHHHHhhh
Confidence 732 168999999998765433
No 85
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=2e-27 Score=199.29 Aligned_cols=285 Identities=14% Similarity=0.206 Sum_probs=224.7
Q ss_pred ccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEe-cCCCCCCCceEEEccCCCeEEEEeecCCcceEEe
Q 013578 89 GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRI-NLPPGGPPTAVAFADNATSIVVATHNLSGCSLYM 167 (440)
Q Consensus 89 ~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~ 167 (440)
.|.+-|.++.+|...+++.||+. |-|+|||+....... ..... ....+..+.++..+|||+.|++++.. ..+.+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~-PvsqLdcl~rdnyiRSckL~pdgrtLivGGea---stlsi 491 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKS-PVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA---STLSI 491 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCC-ccccccccCcccceeeeEecCCCceEEecccc---ceeee
Confidence 68899999999999999999986 469999997653321 11111 12245789999999999999999874 67777
Q ss_pred eccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeC
Q 013578 168 YGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDT 247 (440)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 247 (440)
|+............ ......+.....+||.+ +.++|..||.|.|||+.+...++.+++
T Consensus 492 WDLAapTprikael---------------------tssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqG 549 (705)
T KOG0639|consen 492 WDLAAPTPRIKAEL---------------------TSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQG 549 (705)
T ss_pred eeccCCCcchhhhc---------------------CCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeecccC
Confidence 77655421111111 11112234455688888 888999999999999999999999999
Q ss_pred CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN 327 (440)
Q Consensus 248 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd 327 (440)
|...+.|+.+++||..|.+|+-|.+|+.||++.+. .+.. ....+.|.++.++|++.+|+.|-.++.+.+..
T Consensus 550 htDGascIdis~dGtklWTGGlDntvRcWDlregr--------qlqq-hdF~SQIfSLg~cP~~dWlavGMens~vevlh 620 (705)
T KOG0639|consen 550 HTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGR--------QLQQ-HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLH 620 (705)
T ss_pred CCCCceeEEecCCCceeecCCCccceeehhhhhhh--------hhhh-hhhhhhheecccCCCccceeeecccCcEEEEe
Confidence 99999999999999999999999999999998765 2221 12457899999999999999999999998887
Q ss_pred cCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-ecCCEEEEEEcCCccchhhhhccccCCeEEEEec
Q 013578 328 INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-THGSTLQWLSVETGKVLDTAEKAHEGEITCMAWA 406 (440)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~ 406 (440)
..... .+...-|..-|.++.|++.|+++++ |-|+.+..|.+.-|..+.... ....|.++..+
T Consensus 621 ~skp~---------------kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk--E~SsVlsCDIS 683 (705)
T KOG0639|consen 621 TSKPE---------------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSCDIS 683 (705)
T ss_pred cCCcc---------------ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc--ccCcceeeeec
Confidence 76432 1233455667899999999999887 559999999999998887764 77899999999
Q ss_pred CCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578 407 PKTIPMGNQQVSVLATSSVDKKVKLWLA 434 (440)
Q Consensus 407 ~~~~~~~~~~~~~l~t~~~Dg~i~vw~~ 434 (440)
.|+ ++++||+.|....||.+
T Consensus 684 ~dd--------kyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 684 FDD--------KYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCc--------eEEEecCCCcceEEEEE
Confidence 998 89999999999999875
No 86
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.4e-27 Score=180.79 Aligned_cols=256 Identities=21% Similarity=0.286 Sum_probs=200.9
Q ss_pred cccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceE
Q 013578 86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSL 165 (440)
Q Consensus 86 ~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~ 165 (440)
.-.+|.+.|..+...--|++||||+.|++|||+.+..... .+.+....+|.++|..++|..
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~--s~ll~~L~Gh~GPVwqv~wah----------------- 66 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ--SKLLAELTGHSGPVWKVAWAH----------------- 66 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC--ceeeeEecCCCCCeeEEeecc-----------------
Confidence 3457999999998888899999999999999999987654 245667789999999999963
Q ss_pred EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce--ee
Q 013578 166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL--LG 243 (440)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~--~~ 243 (440)
|.-..+|++|+.||.|.||.-++++- ..
T Consensus 67 --------------------------------------------------Pk~G~iLAScsYDgkVIiWke~~g~w~k~~ 96 (299)
T KOG1332|consen 67 --------------------------------------------------PKFGTILASCSYDGKVIIWKEENGRWTKAY 96 (299)
T ss_pred --------------------------------------------------cccCcEeeEeecCceEEEEecCCCchhhhh
Confidence 11112899999999999999887743 44
Q ss_pred eeeCCCCcccEEEecCC--CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCC---C-------
Q 013578 244 NVDTNQLKNNMAAISPN--GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPN---S------- 311 (440)
Q Consensus 244 ~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~---~------- 311 (440)
....|...+++++|.|. |-.|++++.||+|.|.+.+..... ........|.-.|++++|.|- |
T Consensus 97 e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w-----~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~ 171 (299)
T KOG1332|consen 97 EHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW-----TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGP 171 (299)
T ss_pred hhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc-----cchhhhhccccccceeeecCcCCCccccccCc
Confidence 55678999999999885 678999999999999998765211 123445679999999999985 4
Q ss_pred ----CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC----CEEEEec-CCEEEEEE
Q 013578 312 ----EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG----KILAATH-GSTLQWLS 382 (440)
Q Consensus 312 ----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g----~~l~~~~-~~~i~i~d 382 (440)
+.|++|+.|..|+||+.....-.. .....+|...|+.++|.|.- .+||+++ ||++.||.
T Consensus 172 ~~~~krlvSgGcDn~VkiW~~~~~~w~~------------e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt 239 (299)
T KOG1332|consen 172 AAKVKRLVSGGCDNLVKIWKFDSDSWKL------------ERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT 239 (299)
T ss_pred ccccceeeccCCccceeeeecCCcchhh------------hhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence 569999999999999998642211 12245788889999999974 3778776 99999997
Q ss_pred cCCc--cchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 383 VETG--KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 383 ~~~~--~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
.... +-..++.......++.+.|+..| ++|+.++.|+.|.+|.-+
T Consensus 240 ~~~e~e~wk~tll~~f~~~~w~vSWS~sG--------n~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 240 KDEEYEPWKKTLLEEFPDVVWRVSWSLSG--------NILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ecCccCcccccccccCCcceEEEEEeccc--------cEEEEecCCcEEEEEEeC
Confidence 6522 22233333456789999999999 899999999999999754
No 87
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=5.1e-27 Score=211.44 Aligned_cols=242 Identities=21% Similarity=0.313 Sum_probs=203.8
Q ss_pred ccccc-cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578 85 NTLKG-HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC 163 (440)
Q Consensus 85 ~~l~~-H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~ 163 (440)
..+.+ |...+.+..|. +.++++++.|++|++|+..++.. +.....+|.+.|.+++|..-+
T Consensus 201 ~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~----i~~~l~GH~g~V~~l~~~~~~------------- 261 (537)
T KOG0274|consen 201 KVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL----ILTRLVGHFGGVWGLAFPSGG------------- 261 (537)
T ss_pred eeecccCcchhhhheee--cCeEEecCCCceeEEeecccceE----EEeeccCCCCCceeEEEecCC-------------
Confidence 44454 57789999997 56899999999999999987642 233377899999999986421
Q ss_pred eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee
Q 013578 164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG 243 (440)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 243 (440)
..+++|+.|.++++||..+|++..
T Consensus 262 --------------------------------------------------------~~lvsgS~D~t~rvWd~~sg~C~~ 285 (537)
T KOG0274|consen 262 --------------------------------------------------------DKLVSGSTDKTERVWDCSTGECTH 285 (537)
T ss_pred --------------------------------------------------------CEEEEEecCCcEEeEecCCCcEEE
Confidence 189999999999999999999999
Q ss_pred eeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcE
Q 013578 244 NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTL 323 (440)
Q Consensus 244 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i 323 (440)
.+.+|...+.++... ...+++|+.|.+|++|++..+. .+..+.+|.++|.++..+ +.++++|+.|++|
T Consensus 286 ~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~--------~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v 353 (537)
T KOG0274|consen 286 SLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGA--------CLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTV 353 (537)
T ss_pred EecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcc--------eEEEeccccccEEEEEec--CCEEEEEecCceE
Confidence 999999988887654 5578889999999999998665 788888899999999996 8899999999999
Q ss_pred EEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCc-cchhhhhccccCCeE
Q 013578 324 RVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETG-KVLDTAEKAHEGEIT 401 (440)
Q Consensus 324 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~-~~~~~~~~~h~~~v~ 401 (440)
++||+.+.+++ ....+|...|.++.+... ..+..|+ |+.|++||+.+. +++..+ .+|.+-|.
T Consensus 354 ~VW~~~~~~cl--------------~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl-~~h~~~v~ 417 (537)
T KOG0274|consen 354 KVWDPRTGKCL--------------KSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL-QGHTSLVS 417 (537)
T ss_pred EEEEhhhceee--------------eeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh-cCCccccc
Confidence 99999977654 334568888999988777 6666665 999999999999 899998 58999887
Q ss_pred EEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 402 CMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 402 ~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
++.+.. .+|++++.|++|++||...+++
T Consensus 418 ~l~~~~----------~~Lvs~~aD~~Ik~WD~~~~~~ 445 (537)
T KOG0274|consen 418 SLLLRD----------NFLVSSSADGTIKLWDAEEGEC 445 (537)
T ss_pred cccccc----------ceeEeccccccEEEeecccCce
Confidence 777765 4899999999999999998875
No 88
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=5.5e-26 Score=205.50 Aligned_cols=230 Identities=12% Similarity=0.111 Sum_probs=164.5
Q ss_pred eeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCC
Q 013578 109 ACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGP 188 (440)
Q Consensus 109 ~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (440)
|+.++.|++|+..... ......+|.+.|.+++|+|+..
T Consensus 50 GG~~gvI~L~~~~r~~-----~v~~L~gH~~~V~~lafsP~~~------------------------------------- 87 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP-----PVIKLKGHTSSILDLQFNPCFS------------------------------------- 87 (568)
T ss_pred CCceeEEEeeecCCCc-----eEEEEcCCCCCEEEEEEcCCCC-------------------------------------
Confidence 6778999999876532 3445668889999999998621
Q ss_pred ceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc--------eeeeeeCCCCcccEEEecCC
Q 013578 189 EIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK--------LLGNVDTNQLKNNMAAISPN 260 (440)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--------~~~~~~~~~~~v~~~~~s~~ 260 (440)
. +|++|+.|++|++||+.++. ++..+.+|...|.+++|+|+
T Consensus 88 ------------------------------~-lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~ 136 (568)
T PTZ00420 88 ------------------------------E-ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPM 136 (568)
T ss_pred ------------------------------C-EEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCC
Confidence 1 78899999999999997642 33467788999999999999
Q ss_pred CCe-EEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCC
Q 013578 261 GRF-LAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPK 339 (440)
Q Consensus 261 ~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 339 (440)
+.. |++++.|+.|++||++.+. ....+. |...|.+++|+|+|.+|++++.|+.|+|||++++..+..
T Consensus 137 g~~iLaSgS~DgtIrIWDl~tg~--------~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t--- 204 (568)
T PTZ00420 137 NYYIMCSSGFDSFVNIWDIENEK--------RAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS--- 204 (568)
T ss_pred CCeEEEEEeCCCeEEEEECCCCc--------EEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE---
Confidence 875 5788999999999997654 333443 567899999999999999999999999999997654321
Q ss_pred ccccccccccCCCCCeeeeeeEEeCCCCCEEEE-ecC----CEEEEEEcCC-ccchhhhh-ccccCCeEEEEecCCCCCC
Q 013578 340 TLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-THG----STLQWLSVET-GKVLDTAE-KAHEGEITCMAWAPKTIPM 412 (440)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~----~~i~i~d~~~-~~~~~~~~-~~h~~~v~~v~~~~~~~~~ 412 (440)
+ ..+........+....|++++.+|++ |.+ +.|++||++. ++++..+. ..+.+.+......+++
T Consensus 205 ----l--~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg--- 275 (568)
T PTZ00420 205 ----F--HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG--- 275 (568)
T ss_pred ----E--ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC---
Confidence 1 01111111122334456789888776 444 3799999985 45554432 1122233333334445
Q ss_pred CCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 413 GNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 413 ~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
.++++|+.|++|++|++..+
T Consensus 276 -----~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 276 -----LIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred -----CEEEEEECCCeEEEEEccCC
Confidence 78999999999999999765
No 89
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.4e-26 Score=202.34 Aligned_cols=203 Identities=19% Similarity=0.317 Sum_probs=154.6
Q ss_pred EEEEeeCCceEEEEeCCCCc---eeee----------e------------------------eCCCCcccEEEecCCCCe
Q 013578 221 IIASCSEGTDISIWHGKTGK---LLGN----------V------------------------DTNQLKNNMAAISPNGRF 263 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~---~~~~----------~------------------------~~~~~~v~~~~~s~~~~~ 263 (440)
.+++|+.|++|++||+..+. ..+. . -.....+++++++|+|++
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 59999999999999987521 1100 0 011235789999999999
Q ss_pred EEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC---CCCEEEEEeCCCcEEEEecCccccccCCCCc
Q 013578 264 LAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP---NSEQIITASKDGTLRVWNINVRYHLDEDPKT 340 (440)
Q Consensus 264 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 340 (440)
||+|..-|+++||++.... ....+.+|...|.|+.|+- ..++||+++.|..|.+||+.....+.+....
T Consensus 474 LAsGDr~GnlrVy~Lq~l~--------~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~ 545 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQELE--------YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDG 545 (1080)
T ss_pred ecccCccCceEEEEehhhh--------hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcc
Confidence 9999999999999996544 6677889999999999986 3467999999999999998755443221100
Q ss_pred ----------------cccc--------------------cccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEc
Q 013578 341 ----------------LKVL--------------------PIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSV 383 (440)
Q Consensus 341 ----------------~~~~--------------------~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~ 383 (440)
.+.+ ..+..........+..|+..|..++++++ .|..|+||++
T Consensus 546 HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i 625 (1080)
T KOG1408|consen 546 HSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDI 625 (1080)
T ss_pred cccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEec
Confidence 0000 01111122233457789999999988875 5999999999
Q ss_pred CCccchhhhh--ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 384 ETGKVLDTAE--KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 384 ~~~~~~~~~~--~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
++|+....++ .+|++....+...|.+ -||+|...|.++.++|+-++||
T Consensus 626 ~sgKq~k~FKgs~~~eG~lIKv~lDPSg--------iY~atScsdktl~~~Df~sgEc 675 (1080)
T KOG1408|consen 626 ESGKQVKSFKGSRDHEGDLIKVILDPSG--------IYLATSCSDKTLCFVDFVSGEC 675 (1080)
T ss_pred cccceeeeecccccCCCceEEEEECCCc--------cEEEEeecCCceEEEEeccchh
Confidence 9999988885 3466789999999998 8999999999999999999987
No 90
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.9e-26 Score=179.02 Aligned_cols=249 Identities=16% Similarity=0.250 Sum_probs=182.3
Q ss_pred CCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeeccccccc
Q 013578 135 LPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYG 214 (440)
Q Consensus 135 ~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (440)
....+.|.++.|+++|..+++++.+ ..+.+++......... +....++.....+
T Consensus 11 ~~~~~~i~sl~fs~~G~~litss~d---Dsl~LYd~~~g~~~~t-----------------------i~skkyG~~~~~F 64 (311)
T KOG1446|consen 11 RETNGKINSLDFSDDGLLLITSSED---DSLRLYDSLSGKQVKT-----------------------INSKKYGVDLACF 64 (311)
T ss_pred ccCCCceeEEEecCCCCEEEEecCC---CeEEEEEcCCCceeeE-----------------------eecccccccEEEE
Confidence 3356889999999999999998776 3566666554421111 1111122222222
Q ss_pred CCCCCeEEEEee--CCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeee
Q 013578 215 TADGSTIIASCS--EGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSV 292 (440)
Q Consensus 215 ~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 292 (440)
..... .++.++ .|.+|+..++.+.+.++.+.+|...|..++.+|-+..+++++.|++|++||++..+ +.
T Consensus 65 th~~~-~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~--------cq 135 (311)
T KOG1446|consen 65 THHSN-TVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK--------CQ 135 (311)
T ss_pred ecCCc-eEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCC--------Cc
Confidence 33333 333333 48899999999999999999999999999999999999999999999999998654 33
Q ss_pred eeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE
Q 013578 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA 372 (440)
Q Consensus 293 ~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 372 (440)
..+. ...-..++|+|+|-++|++.....|++||++.-.. .....+.+. .+...+++.+.|||||++|+.
T Consensus 136 g~l~--~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dk-----gPF~tf~i~----~~~~~ew~~l~FS~dGK~iLl 204 (311)
T KOG1446|consen 136 GLLN--LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDK-----GPFTTFSIT----DNDEAEWTDLEFSPDGKSILL 204 (311)
T ss_pred eEEe--cCCCcceeECCCCcEEEEecCCCeEEEEEecccCC-----CCceeEccC----CCCccceeeeEEcCCCCEEEE
Confidence 3332 22334578999999999999888999999985421 222222111 144566889999999998877
Q ss_pred ec-CCEEEEEEcCCccchhhhhccccCC---eEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 373 TH-GSTLQWLSVETGKVLDTAEKAHEGE---ITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 373 ~~-~~~i~i~d~~~~~~~~~~~~~h~~~---v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
+. .+.+++.|.-+|..+..+. .+... -....|.||+ .++++|+.||+|.+|++++++
T Consensus 205 sT~~s~~~~lDAf~G~~~~tfs-~~~~~~~~~~~a~ftPds--------~Fvl~gs~dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 205 STNASFIYLLDAFDGTVKSTFS-GYPNAGNLPLSATFTPDS--------KFVLSGSDDGTIHVWNLETGK 265 (311)
T ss_pred EeCCCcEEEEEccCCcEeeeEe-eccCCCCcceeEEECCCC--------cEEEEecCCCcEEEEEcCCCc
Confidence 65 7889999999999887773 44432 2677899999 899999999999999998875
No 91
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=5.8e-26 Score=178.59 Aligned_cols=273 Identities=12% Similarity=0.187 Sum_probs=194.2
Q ss_pred ccCcceeEEEEcc-CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEe
Q 013578 89 GHGDSVTGLCFSS-DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYM 167 (440)
Q Consensus 89 ~H~~~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~ 167 (440)
.-.+.|.+|+||| ...+++.||.||+||+|+++..... ..+....|.++|.+++|+.+|..+++++.| ..+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~---~~ka~~~~~~PvL~v~WsddgskVf~g~~D---k~~k~ 98 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL---VPKAQQSHDGPVLDVCWSDDGSKVFSGGCD---KQAKL 98 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcc---cchhhhccCCCeEEEEEccCCceEEeeccC---CceEE
Confidence 4578899999999 5667779999999999999874221 224556788999999999999999999888 45666
Q ss_pred eccccccccccccccCCCCCCceeecccccccceeEEEeecc-cc-cccCCCCCeEEEEeeCCceEEEEeCCCCceeeee
Q 013578 168 YGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGA-SA-TYGTADGSTIIASCSEGTDISIWHGKTGKLLGNV 245 (440)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 245 (440)
|+....... .+..+.++ .. .++.+.....|++|+.|++|+.||.+...++.++
T Consensus 99 wDL~S~Q~~-------------------------~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~ 153 (347)
T KOG0647|consen 99 WDLASGQVS-------------------------QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL 153 (347)
T ss_pred EEccCCCee-------------------------eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee
Confidence 665443110 01111110 00 1112222338999999999999999999988888
Q ss_pred eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEE
Q 013578 246 DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRV 325 (440)
Q Consensus 246 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~i 325 (440)
...+ ++-+.+-...+++++..+..|.+|+++.+... .... .....-.+.|++..++....+.|+.+|.+.|
T Consensus 154 ~LPe---RvYa~Dv~~pm~vVata~r~i~vynL~n~~te----~k~~--~SpLk~Q~R~va~f~d~~~~alGsiEGrv~i 224 (347)
T KOG0647|consen 154 QLPE---RVYAADVLYPMAVVATAERHIAVYNLENPPTE----FKRI--ESPLKWQTRCVACFQDKDGFALGSIEGRVAI 224 (347)
T ss_pred eccc---eeeehhccCceeEEEecCCcEEEEEcCCCcch----hhhh--cCcccceeeEEEEEecCCceEeeeecceEEE
Confidence 7643 33344445668899999999999999655411 1011 1112345789999999988899999999999
Q ss_pred EecCccccccCCCCccccccccccC----CCCCeeeeeeEEeCCCCCEEEE-ecCCEEEEEEcCCccchhhhhccccCCe
Q 013578 326 WNINVRYHLDEDPKTLKVLPIPLLD----SNGATLQYDRLSLSSDGKILAA-THGSTLQWLSVETGKVLDTAEKAHEGEI 400 (440)
Q Consensus 326 wd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~~g~~l~~-~~~~~i~i~d~~~~~~~~~~~~~h~~~v 400 (440)
..+..+.. ...+.+..+. ..+....|+.++|+|.-..|++ |+||.+.+||-.....+... ..|..+|
T Consensus 225 q~id~~~~-------~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s-~~~~qpI 296 (347)
T KOG0647|consen 225 QYIDDPNP-------KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS-ETHPQPI 296 (347)
T ss_pred EecCCCCc-------cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhcc-CcCCCcc
Confidence 99986432 1112222222 2224677999999998666665 78999999999888888877 4799999
Q ss_pred EEEEecCCC
Q 013578 401 TCMAWAPKT 409 (440)
Q Consensus 401 ~~v~~~~~~ 409 (440)
++.+|+.+|
T Consensus 297 tcc~fn~~G 305 (347)
T KOG0647|consen 297 TCCSFNRNG 305 (347)
T ss_pred ceeEecCCC
Confidence 999999998
No 92
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=3.6e-26 Score=179.22 Aligned_cols=308 Identities=16% Similarity=0.253 Sum_probs=215.8
Q ss_pred ccccCcceeEEEEcc-CCCEEEEeeCCCcEEEEecCCCCCc--c-----ee---eEEecCCCCCCCceEEEccCCCeE-E
Q 013578 87 LKGHGDSVTGLCFSS-DGKCLATACADGVIRVHKLDDASSK--S-----FK---FLRINLPPGGPPTAVAFADNATSI-V 154 (440)
Q Consensus 87 l~~H~~~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~--~-----~~---~~~~~~~~~~~v~~v~~~~~~~~l-~ 154 (440)
..-|.+.|+++...+ .|+|+++|+.||.|.|||++..... . .. .......|.-.|.++.|.|-..-+ .
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 346899999999998 7899999999999999999865411 0 01 112334566789999999965544 4
Q ss_pred EEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEE
Q 013578 155 VATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIW 234 (440)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vw 234 (440)
+++.| ..+.+|+.+.......++.... .+... . ........++++|..+-.|++-
T Consensus 119 ssSFD---htlKVWDtnTlQ~a~~F~me~~------VYsha-----------m-----Sp~a~sHcLiA~gtr~~~VrLC 173 (397)
T KOG4283|consen 119 SSSFD---HTLKVWDTNTLQEAVDFKMEGK------VYSHA-----------M-----SPMAMSHCLIAAGTRDVQVRLC 173 (397)
T ss_pred ccccc---ceEEEeecccceeeEEeecCce------eehhh-----------c-----ChhhhcceEEEEecCCCcEEEE
Confidence 44555 7788888776532222221111 11100 0 0011122378899999999999
Q ss_pred eCCCCceeeeeeCCCCcccEEEecCCCC-eEEEEecCCCEEEEEeEecCCC-------ceeeeeeeeeeeccccceEEEE
Q 013578 235 HGKTGKLLGNVDTNQLKNNMAAISPNGR-FLAAAAFTADVKVWEIVYSKDG-------LVKAVTSVMQLKGHKSAVTWLC 306 (440)
Q Consensus 235 d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~~~~~~h~~~v~~~~ 306 (440)
|+.+|...+.+.+|...|.++.|+|... .|++|+.||.|++||++..... +.+....+..-..|.+.|.+++
T Consensus 174 Di~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla 253 (397)
T KOG4283|consen 174 DIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLA 253 (397)
T ss_pred eccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeee
Confidence 9999999999999999999999999765 5788999999999999765210 1111222334557899999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCc
Q 013578 307 FAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETG 386 (440)
Q Consensus 307 ~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~ 386 (440)
|+.++.++++++.|..+++|+...+..-...... .......+ ..+. +.-...+.++..-.++.+.++++-+|
T Consensus 254 ~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~------~~~n~~~~-~~~~-~~~~~s~vfv~~p~~~~lall~~~sg 325 (397)
T KOG4283|consen 254 WTSDARYLASCGTDDRIRVWNMESGRNTLREFGP------IIHNQTTS-FAVH-IQSMDSDVFVLFPNDGSLALLNLLEG 325 (397)
T ss_pred ecccchhhhhccCccceEEeecccCccccccccc------cccccccc-ceEE-EeecccceEEEEecCCeEEEEEccCc
Confidence 9999999999999999999999877542111100 01111111 1111 22112233444455799999999999
Q ss_pred cchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 387 KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 387 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
..+..+ ..|...|.|..+-|+- ..+.+|..|+.|..|-..-
T Consensus 326 s~ir~l-~~h~k~i~c~~~~~~f--------q~~~tg~~d~ni~~w~p~l 366 (397)
T KOG4283|consen 326 SFVRRL-STHLKRINCAAYRPDF--------EQCFTGDMNGNIYMWSPAL 366 (397)
T ss_pred eEEEee-ecccceeeEEeecCch--------hhhhccccCCccccccccc
Confidence 999888 5899999999999997 7899999999999998743
No 93
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=3.9e-27 Score=195.27 Aligned_cols=225 Identities=19% Similarity=0.273 Sum_probs=180.7
Q ss_pred ccccccCcceeEEEEccC-CCEEEEeeCCCcEEEEecCCCCCc--ceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578 85 NTLKGHGDSVTGLCFSSD-GKCLATACADGVIRVHKLDDASSK--SFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS 161 (440)
Q Consensus 85 ~~l~~H~~~V~~l~~s~d-g~~l~t~s~dg~v~vW~~~~~~~~--~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~ 161 (440)
.+|.||++.=++|+|++. .-+|++|+.|++|++||+...... .......+.+|...|..++|++-...
T Consensus 171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~--------- 241 (422)
T KOG0264|consen 171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED--------- 241 (422)
T ss_pred eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh---------
Confidence 378999998899999984 458999999999999999876542 23344566788888999999875321
Q ss_pred cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCC--CC
Q 013578 162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK--TG 239 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~--~~ 239 (440)
++.+++.|+.+.|||.+ +.
T Consensus 242 -----------------------------------------------------------lF~sv~dd~~L~iwD~R~~~~ 262 (422)
T KOG0264|consen 242 -----------------------------------------------------------LFGSVGDDGKLMIWDTRSNTS 262 (422)
T ss_pred -----------------------------------------------------------hheeecCCCeEEEEEcCCCCC
Confidence 78899999999999999 55
Q ss_pred ceeeeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCC-CEEEEE
Q 013578 240 KLLGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS-EQIITA 317 (440)
Q Consensus 240 ~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~ 317 (440)
++......|...+.|++|+| ++..||+|+.|++|.+||+|... .+++.+.+|...|.++.|+|.. ..||++
T Consensus 263 ~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~-------~~lh~~e~H~dev~~V~WSPh~etvLASS 335 (422)
T KOG0264|consen 263 KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN-------KPLHTFEGHEDEVFQVEWSPHNETVLASS 335 (422)
T ss_pred CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc-------cCceeccCCCcceEEEEeCCCCCceeEec
Confidence 66677788999999999999 56788999999999999998776 3788999999999999999954 578999
Q ss_pred eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe--cCCEEEEEEcC
Q 013578 318 SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT--HGSTLQWLSVE 384 (440)
Q Consensus 318 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~--~~~~i~i~d~~ 384 (440)
+.|+.+.+||+..-...+........-+-.++...||...|..++|+|+..+++++ .|+.+.||...
T Consensus 336 g~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 336 GTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 99999999999854332211111112223456778999999999999999977763 48999999875
No 94
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.5e-27 Score=204.65 Aligned_cols=194 Identities=17% Similarity=0.272 Sum_probs=164.4
Q ss_pred EEEEeeCCceEEEEeCCCC--ceeeeeeCCCCcccEEEe-cCCCCeEEEEecCCCEEEEEeEecCCCcee--eeeeeeee
Q 013578 221 IIASCSEGTDISIWHGKTG--KLLGNVDTNQLKNNMAAI-SPNGRFLAAAAFTADVKVWEIVYSKDGLVK--AVTSVMQL 295 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~--~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~~ 295 (440)
.|++++.|.+|++|+...+ -++..+..|...|.|+++ .++...+|+|+-|+.|.+||+..+...... .......+
T Consensus 87 tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl 166 (735)
T KOG0308|consen 87 TLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSL 166 (735)
T ss_pred ceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccC
Confidence 6899999999999999877 577888999999999999 888999999999999999999876321110 11122233
Q ss_pred e-ccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-
Q 013578 296 K-GHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT- 373 (440)
Q Consensus 296 ~-~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~- 373 (440)
. |+..+|.+++..+.|..|++|+..+.+++||.+++..+ ....+|...|..+..++||+.++++
T Consensus 167 ~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ki--------------mkLrGHTdNVr~ll~~dDGt~~ls~s 232 (735)
T KOG0308|consen 167 GSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI--------------MKLRGHTDNVRVLLVNDDGTRLLSAS 232 (735)
T ss_pred CCCCccceeeeecCCcceEEEecCcccceEEeccccccce--------------eeeeccccceEEEEEcCCCCeEeecC
Confidence 3 88999999999999999999999999999999976543 2234778889999999999987775
Q ss_pred cCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 374 HGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 374 ~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
+||+|++||+...+++.++ ..|...|+++..+|+- ..+.+|+.||.|..=++.+.
T Consensus 233 SDgtIrlWdLgqQrCl~T~-~vH~e~VWaL~~~~sf--------~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 233 SDGTIRLWDLGQQRCLATY-IVHKEGVWALQSSPSF--------THVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred CCceEEeeeccccceeeeE-EeccCceEEEeeCCCc--------ceEEecCCCCcEEecccCCc
Confidence 5999999999999999998 5899999999999997 89999999999999888874
No 95
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=1.9e-27 Score=181.99 Aligned_cols=251 Identities=17% Similarity=0.258 Sum_probs=194.8
Q ss_pred ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
-+.+|.||.++|+...++.+..+.|+++.|-+-+|||.-++.. .....|..-|.+++|+.|.++|++++.+
T Consensus 51 wigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgde------lhsf~hkhivk~~af~~ds~~lltgg~e--- 121 (334)
T KOG0278|consen 51 WIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDE------LHSFEHKHIVKAVAFSQDSNYLLTGGQE--- 121 (334)
T ss_pred cEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhh------hhhhhhhheeeeEEecccchhhhccchH---
Confidence 4789999999999999999989999999999999999887753 2345677889999999999999999876
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL 242 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 242 (440)
..+++++.++... +...+..+....+..+. ....+ .+++.++|++||+||.+++..+
T Consensus 122 kllrvfdln~p~A------------pp~E~~ghtg~Ir~v~w----------c~eD~-~iLSSadd~tVRLWD~rTgt~v 178 (334)
T KOG0278|consen 122 KLLRVFDLNRPKA------------PPKEISGHTGGIRTVLW----------CHEDK-CILSSADDKTVRLWDHRTGTEV 178 (334)
T ss_pred HHhhhhhccCCCC------------CchhhcCCCCcceeEEE----------eccCc-eEEeeccCCceEEEEeccCcEE
Confidence 5666666655421 11111222221111111 22333 6777799999999999999999
Q ss_pred eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCc
Q 013578 243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGT 322 (440)
Q Consensus 243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~ 322 (440)
+++.. ..+|+++.++++|++|.++ ..+.|.+||...-. .+..++ -...|.+..++|+...+++|+.|..
T Consensus 179 ~sL~~-~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~--------~lKs~k-~P~nV~SASL~P~k~~fVaGged~~ 247 (334)
T KOG0278|consen 179 QSLEF-NSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFG--------LLKSYK-MPCNVESASLHPKKEFFVAGGEDFK 247 (334)
T ss_pred EEEec-CCCCcceeeccCCCEEEEe-cCceeEEecccccc--------ceeecc-CccccccccccCCCceEEecCcceE
Confidence 99976 5679999999999988776 46789999986543 444443 3456889999999999999999999
Q ss_pred EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccch
Q 013578 323 LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVL 389 (440)
Q Consensus 323 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~ 389 (440)
++.||..++..+.. ...+|..+|.++.|+|+|...|+|+ ||+|++|-+..++..
T Consensus 248 ~~kfDy~TgeEi~~-------------~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 248 VYKFDYNTGEEIGS-------------YNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred EEEEeccCCceeee-------------cccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 99999998865421 1457788899999999999999987 999999998776644
No 96
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.7e-26 Score=178.36 Aligned_cols=258 Identities=20% Similarity=0.320 Sum_probs=188.1
Q ss_pred cccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEe
Q 013578 88 KGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYM 167 (440)
Q Consensus 88 ~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~ 167 (440)
.+|.+-|+|+.|.+-|+++|||+.|++|+|||..... ..+.+...-..|++.|..+.|.+-.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s-~~W~~Ts~Wrah~~Si~rV~WAhPE----------------- 71 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDS-GTWSCTSSWRAHDGSIWRVVWAHPE----------------- 71 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCC-CceEEeeeEEecCCcEEEEEecCcc-----------------
Confidence 4799999999999999999999999999999985543 3355555556677788887775421
Q ss_pred eccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC---------
Q 013578 168 YGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT--------- 238 (440)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~--------- 238 (440)
-|+ .+++|+.|+++.||.-..
T Consensus 72 -------------------------------------------------fGq-vvA~cS~Drtv~iWEE~~~~~~~~~~~ 101 (361)
T KOG2445|consen 72 -------------------------------------------------FGQ-VVATCSYDRTVSIWEEQEKSEEAHGRR 101 (361)
T ss_pred -------------------------------------------------ccc-eEEEEecCCceeeeeecccccccccce
Confidence 133 899999999999997521
Q ss_pred CceeeeeeCCCCcccEEEecCC--CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee-------ccccceEEEEEcC
Q 013578 239 GKLLGNVDTNQLKNNMAAISPN--GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK-------GHKSAVTWLCFAP 309 (440)
Q Consensus 239 ~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~p 309 (440)
.....++......|+.+.|.|. |-.||+++.||.++||+..... ....+.....++ .+..+-.|+.|+|
T Consensus 102 Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~--nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~ 179 (361)
T KOG2445|consen 102 WVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM--NLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNP 179 (361)
T ss_pred eEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcc--ccccchhhhhhhhccCCcccccCcceEEeecc
Confidence 1223455666788999999994 7789999999999999964322 112233333333 4667889999998
Q ss_pred C---CCEEEEEeCC-----CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC-CC---EEEEec-CC
Q 013578 310 N---SEQIITASKD-----GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD-GK---ILAATH-GS 376 (440)
Q Consensus 310 ~---~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~---~l~~~~-~~ 376 (440)
. ..+||.|+.+ +.++||....... +..+ .....++..+|+.++|.|+ |+ +||++. ||
T Consensus 180 sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r-----Kw~k-----va~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 180 SRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR-----KWLK-----VAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred ccccCceEEEEcccCCccccceEEEEecCCcc-----eeee-----ehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 4 3567887765 4789998764321 1111 1223377788999999997 43 677766 66
Q ss_pred EEEEEEcCCcc--------------------chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 377 TLQWLSVETGK--------------------VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 377 ~i~i~d~~~~~--------------------~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
|+||.+.... .+..+ ..|.+.|+.+.|+-.| ..|++.|.||.||+|...
T Consensus 250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~-~~H~~~VWrv~wNmtG--------tiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL-DDHNGEVWRVRWNMTG--------TILSSTGDDGCVRLWKAN 318 (361)
T ss_pred -EEEEEEeeccchhhhhcccCCCCccccceEEeeec-cCCCCceEEEEEeeee--------eEEeecCCCceeeehhhh
Confidence 9999987321 12223 5799999999999998 899999999999999753
No 97
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.2e-26 Score=201.90 Aligned_cols=243 Identities=19% Similarity=0.329 Sum_probs=195.2
Q ss_pred ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCce-EEEccCCCeEEEEeecCC
Q 013578 83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA-VAFADNATSIVVATHNLS 161 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~-v~~~~~~~~l~~~~~~~~ 161 (440)
.-+.+.||...|..+++.+ +..++++|+||++++|+-...+-. ......++.+-+.. ++|.+
T Consensus 6 ls~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l---~~~~~~~~~g~i~~~i~y~e------------- 68 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYL---ETHAFEGPKGFIANSICYAE------------- 68 (745)
T ss_pred eEEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccc---cceecccCcceeeccceecc-------------
Confidence 3467899999999999875 458999999999999987544321 11111222222211 22221
Q ss_pred cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578 162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL 241 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 241 (440)
..+..+++|++|..|.+|...+..+
T Consensus 69 -------------------------------------------------------~~~~~l~~g~~D~~i~v~~~~~~~P 93 (745)
T KOG0301|consen 69 -------------------------------------------------------SDKGRLVVGGMDTTIIVFKLSQAEP 93 (745)
T ss_pred -------------------------------------------------------ccCcceEeecccceEEEEecCCCCc
Confidence 1111689999999999999999999
Q ss_pred eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC
Q 013578 242 LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG 321 (440)
Q Consensus 242 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg 321 (440)
+..+.+|+..|.|+....++. +++|+.|.++++|.... +...+.+|+..|+++.+-|++ .++|||.|.
T Consensus 94 ~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~----------l~~~l~gH~asVWAv~~l~e~-~~vTgsaDK 161 (745)
T KOG0301|consen 94 LYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE----------LVYSLQGHTASVWAVASLPEN-TYVTGSADK 161 (745)
T ss_pred hhhhhccccceeeeecCCcCc-eEecccccceEEecchh----------hhcccCCcchheeeeeecCCC-cEEeccCcc
Confidence 999999999999999888887 99999999999998643 456699999999999999988 789999999
Q ss_pred cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeE
Q 013578 322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEIT 401 (440)
Q Consensus 322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~ 401 (440)
+|++|.-.+. .....+|..-|+.+++-+++.++.++.||.|++|++ +|+.+.+. .+|..-|.
T Consensus 162 tIklWk~~~~----------------l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~-~ghtn~vY 223 (745)
T KOG0301|consen 162 TIKLWKGGTL----------------LKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEM-HGHTNFVY 223 (745)
T ss_pred eeeeccCCch----------------hhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeee-eccceEEE
Confidence 9999986421 233457888899999999999999999999999999 78888887 59999999
Q ss_pred EEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 402 CMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 402 ~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
++....++ ..++++|+|++++||+..
T Consensus 224 sis~~~~~--------~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 224 SISMALSD--------GLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEEecCCC--------CeEEEecCCceEEEeecC
Confidence 99955554 699999999999999876
No 98
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.95 E-value=6.1e-26 Score=195.73 Aligned_cols=287 Identities=16% Similarity=0.213 Sum_probs=204.1
Q ss_pred CCCCCCCCCCCCCcccCccc----------cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEe
Q 013578 64 KPHSHSHGDKDQNKRHHPLD----------VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRI 133 (440)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~----------~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~ 133 (440)
..+..+-++.++.+.+.+.. ++....|.+.|..+.|.|....|++++.|.++++||+.+.... -...
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~---G~~~ 139 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV---GGRL 139 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceee---ccee
Confidence 44555666666666555432 3445589999999999997779999999999999999987543 2235
Q ss_pred cCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccc
Q 013578 134 NLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATY 213 (440)
Q Consensus 134 ~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (440)
..+|.+.|.+++|.+....
T Consensus 140 ~~GH~~SvkS~cf~~~n~~------------------------------------------------------------- 158 (720)
T KOG0321|consen 140 NLGHTGSVKSECFMPTNPA------------------------------------------------------------- 158 (720)
T ss_pred ecccccccchhhhccCCCc-------------------------------------------------------------
Confidence 7789999999999887542
Q ss_pred cCCCCCeEEEEeeCCceEEEEeCCCCc---------------------------eeeeeeCCCCcccE---EEecCCCCe
Q 013578 214 GTADGSTIIASCSEGTDISIWHGKTGK---------------------------LLGNVDTNQLKNNM---AAISPNGRF 263 (440)
Q Consensus 214 ~~~~~~~~l~s~~~d~~i~vwd~~~~~---------------------------~~~~~~~~~~~v~~---~~~s~~~~~ 263 (440)
.|++|+.||.|.|||++-.. .+.....+...+.. +.+..|...
T Consensus 159 -------vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~t 231 (720)
T KOG0321|consen 159 -------VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDEST 231 (720)
T ss_pred -------ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccce
Confidence 67777888888888765321 01111122333433 556678888
Q ss_pred EEEEec-CCCEEEEEeEecCCCceeeeeeeeeeecc---ccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCC
Q 013578 264 LAAAAF-TADVKVWEIVYSKDGLVKAVTSVMQLKGH---KSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPK 339 (440)
Q Consensus 264 l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 339 (440)
||+++. |+.|+|||++...............+..| .-.++++.....|.+|+..+.|+.|.+|++.....-
T Consensus 232 laSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s----- 306 (720)
T KOG0321|consen 232 LASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS----- 306 (720)
T ss_pred eeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC-----
Confidence 998887 99999999987653332222233333334 345788888888899888888999999999854221
Q ss_pred ccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcce
Q 013578 340 TLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVS 418 (440)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~ 418 (440)
+...+...........-..+||+.++++|+ |...++|.+.+.+.-..+..+|.-.|++++|.|... .
T Consensus 307 -----P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~-------t 374 (720)
T KOG0321|consen 307 -----PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSAT-------T 374 (720)
T ss_pred -----chhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccC-------C
Confidence 111111111122233456789999999986 999999999998877666689999999999998641 4
Q ss_pred EEEEeeCCCeEEEEeCCCCC
Q 013578 419 VLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 419 ~l~t~~~Dg~i~vw~~~~~~ 438 (440)
-++|+++|.+++||++.++-
T Consensus 375 ~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 375 PVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred CceeeccCcceEEEeccCch
Confidence 68888999999999997653
No 99
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=1e-26 Score=194.03 Aligned_cols=252 Identities=16% Similarity=0.244 Sum_probs=194.4
Q ss_pred eeEEecCCCCCCCceEEEcc-CCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEee
Q 013578 129 KFLRINLPPGGPPTAVAFAD-NATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLF 207 (440)
Q Consensus 129 ~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (440)
+......+|...|.++.|.| .+..|++++.|+.+..+.+|+....+....+ |. .
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g------------------H~-------k 259 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG------------------HR-------K 259 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhc------------------ch-------h
Confidence 34566778999999999999 7777788887755444455553333222111 11 1
Q ss_pred cccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCC-CeEEEEecCCCEEEEEeEecCCCce
Q 013578 208 GASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNG-RFLAAAAFTADVKVWEIVYSKDGLV 286 (440)
Q Consensus 208 ~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~ 286 (440)
....+.++.+|. .+++++.|+.|++||.++|+++..+.. ...+.|+.|+|++ +.|++|+.|+.|+.||++.++
T Consensus 260 ~Vrd~~~s~~g~-~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k---- 333 (503)
T KOG0282|consen 260 PVRDASFNNCGT-SFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK---- 333 (503)
T ss_pred hhhhhhccccCC-eeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchH----
Confidence 223344567777 899999999999999999999999876 4568999999998 899999999999999999887
Q ss_pred eeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC
Q 013578 287 KAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD 366 (440)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 366 (440)
.++.+..|-+.|..+.|-++|+++++.+.|++++||+.+....+.... ........++..+|+
T Consensus 334 ----vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~-------------~~~~hsmP~~~~~P~ 396 (503)
T KOG0282|consen 334 ----VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIA-------------DPEMHTMPCLTLHPN 396 (503)
T ss_pred ----HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhc-------------chhhccCcceecCCC
Confidence 777888899999999999999999999999999999998654332111 111223457999999
Q ss_pred CCEEEE-ecCCEEEEEEcCCccc---hhhhhcccc--CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 367 GKILAA-THGSTLQWLSVETGKV---LDTAEKAHE--GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 367 g~~l~~-~~~~~i~i~d~~~~~~---~~~~~~~h~--~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
+.++++ +-|+.|.+|.+...-. ...+ .+|. +--..+.|+||| ++|++|+.||.+.+||..+.
T Consensus 397 ~~~~~aQs~dN~i~ifs~~~~~r~nkkK~f-eGh~vaGys~~v~fSpDG--------~~l~SGdsdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 397 GKWFAAQSMDNYIAIFSTVPPFRLNKKKRF-EGHSVAGYSCQVDFSPDG--------RTLCSGDSDGKVNFWDWKTT 464 (503)
T ss_pred CCeehhhccCceEEEEecccccccCHhhhh-cceeccCceeeEEEcCCC--------CeEEeecCCccEEEeechhh
Confidence 999998 4599999998754322 2233 4775 456778999999 99999999999999998764
No 100
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.9e-26 Score=190.27 Aligned_cols=249 Identities=19% Similarity=0.332 Sum_probs=196.7
Q ss_pred cccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEe
Q 013578 88 KGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYM 167 (440)
Q Consensus 88 ~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~ 167 (440)
++|...|.+++.|+||+|||||+.|..|.||+.++.+. ...+.+|.+.|.+++|-...
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~eh-----v~~~~ghr~~V~~L~fr~gt----------------- 256 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEH-----VKVFKGHRGAVSSLAFRKGT----------------- 256 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccch-----hhcccccccceeeeeeecCc-----------------
Confidence 59999999999999999999999999999999998763 34466788888888885321
Q ss_pred eccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeC
Q 013578 168 YGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDT 247 (440)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 247 (440)
..+++++.|+.|++|++.....+.++.+
T Consensus 257 ----------------------------------------------------~~lys~s~Drsvkvw~~~~~s~vetlyG 284 (479)
T KOG0299|consen 257 ----------------------------------------------------SELYSASADRSVKVWSIDQLSYVETLYG 284 (479)
T ss_pred ----------------------------------------------------cceeeeecCCceEEEehhHhHHHHHHhC
Confidence 1688999999999999999999999999
Q ss_pred CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN 327 (440)
Q Consensus 248 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd 327 (440)
|+..|..+.....++.+-+|+.|+++++|++... ....+.+|.+.+-|++|-. ...|++|+.||.|.+|+
T Consensus 285 Hqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee---------sqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs 354 (479)
T KOG0299|consen 285 HQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE---------SQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWS 354 (479)
T ss_pred CccceeeechhcccceEEeccccceeEEEecccc---------ceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEee
Confidence 9999999988888899989999999999999433 3456788999999999974 56799999999999999
Q ss_pred cCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCc----cchhhhhccccCCeEE
Q 013578 328 INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETG----KVLDTAEKAHEGEITC 402 (440)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~----~~~~~~~~~h~~~v~~ 402 (440)
+.+.+.+..........+ ......+..+|++++..|...++|+|+ +|.|++|-+.++ .++..+. -.+-|++
T Consensus 355 ~~KKkplf~~~~AHgv~~--~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls--~~GfVNs 430 (479)
T KOG0299|consen 355 LLKKKPLFTSRLAHGVIP--ELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS--LVGFVNS 430 (479)
T ss_pred ecccCceeEeeccccccC--CccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc--cccEEEE
Confidence 987765533222211111 112223336899999999999999988 899999999888 3444442 5678999
Q ss_pred EEecCCCCCCCCCcce-EEEEeeCCCeEEEE
Q 013578 403 MAWAPKTIPMGNQQVS-VLATSSVDKKVKLW 432 (440)
Q Consensus 403 v~~~~~~~~~~~~~~~-~l~t~~~Dg~i~vw 432 (440)
++|++++ . +++..+....+--|
T Consensus 431 l~f~~sg--------k~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 431 LAFSNSG--------KRIVAGIGKEHRLGRW 453 (479)
T ss_pred EEEccCC--------CEEEEeccccccccee
Confidence 9999998 5 45544555444333
No 101
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=2.5e-26 Score=199.93 Aligned_cols=313 Identities=22% Similarity=0.314 Sum_probs=223.8
Q ss_pred ccccccccCcceeEEEEccCCC---EEEEeeCCCcEEEEecCCCCCc----------------ceeeE----------Ee
Q 013578 83 DVNTLKGHGDSVTGLCFSSDGK---CLATACADGVIRVHKLDDASSK----------------SFKFL----------RI 133 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~dg~---~l~t~s~dg~v~vW~~~~~~~~----------------~~~~~----------~~ 133 (440)
.+..+.||++.|.+++|...+. +|||+|.|..||||.+.-.... .+... ..
T Consensus 183 ~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eal 262 (764)
T KOG1063|consen 183 RVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEAL 262 (764)
T ss_pred EEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhh
Confidence 4678999999999999987544 8999999999999997543210 01111 12
Q ss_pred cCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccc
Q 013578 134 NLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATY 213 (440)
Q Consensus 134 ~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (440)
..+|..-|.++.|+|.+..|++++.| ..+.+|...... -.|...- +-...-....+.....
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaD---ksmiiW~pd~~t---------------GiWv~~v-RlGe~gg~a~GF~g~l 323 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASAD---KSMIIWKPDENT---------------GIWVDVV-RLGEVGGSAGGFWGGL 323 (764)
T ss_pred hcCcccceEEEEEccchhhheecccC---cceEEEecCCcc---------------ceEEEEE-EeecccccccceeeEE
Confidence 45899999999999999999999888 455555544331 0111000 0000001122344556
Q ss_pred cCCCCCeEEEEeeCCceEEEEeCCCC---ceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeE-----------
Q 013578 214 GTADGSTIIASCSEGTDISIWHGKTG---KLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIV----------- 279 (440)
Q Consensus 214 ~~~~~~~~l~s~~~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~----------- 279 (440)
+++++. .+++-+..|..++|..... .+...+.+|...|+.++|+|.|.+|++.+.|-+-|+|---
T Consensus 324 w~~n~~-~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaR 402 (764)
T KOG1063|consen 324 WSPNSN-VIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIAR 402 (764)
T ss_pred EcCCCC-EEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecc
Confidence 688887 8888888899999983322 3445567899999999999999999999988877765310
Q ss_pred -------------------------------------------------------------------ecC--------CC
Q 013578 280 -------------------------------------------------------------------YSK--------DG 284 (440)
Q Consensus 280 -------------------------------------------------------------------~~~--------~~ 284 (440)
..+ .+
T Consensus 403 PQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G 482 (764)
T KOG1063|consen 403 PQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTG 482 (764)
T ss_pred cccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccc
Confidence 000 00
Q ss_pred ce----------------------------eeeeeeeeeeccccceEEEEEcCCCCEEEEEeCC-----CcEEEEecCcc
Q 013578 285 LV----------------------------KAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKD-----GTLRVWNINVR 331 (440)
Q Consensus 285 ~~----------------------------~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d-----g~i~iwd~~~~ 331 (440)
.. .-+..++.+.||.-.|.+++.+|+++++|+++.. ..|++|+..+-
T Consensus 483 ~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W 562 (764)
T KOG1063|consen 483 GEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW 562 (764)
T ss_pred cccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch
Confidence 00 0112345677999999999999999999999854 35899998754
Q ss_pred ccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchh---hhhccccCCeEEEEecC
Q 013578 332 YHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLD---TAEKAHEGEITCMAWAP 407 (440)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~---~~~~~h~~~v~~v~~~~ 407 (440)
... ....+|...|+.++|||||++|++.+ |..+.+|......... ...+.|..-|+++.|+|
T Consensus 563 ~~~--------------~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p 628 (764)
T KOG1063|consen 563 LQV--------------QELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP 628 (764)
T ss_pred hhh--------------heecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCc
Confidence 322 23457888999999999999998755 9999999885543221 11368999999999999
Q ss_pred CCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 408 KTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 408 ~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
++ .+++|+|.|.+|+||..+..
T Consensus 629 de--------~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 629 DE--------KYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred cc--------ceeEEecCCceEEEEeccCc
Confidence 98 78999999999999998765
No 102
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=7.3e-26 Score=186.50 Aligned_cols=238 Identities=15% Similarity=0.205 Sum_probs=199.4
Q ss_pred cceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccc
Q 013578 92 DSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEE 171 (440)
Q Consensus 92 ~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~ 171 (440)
..|.++...|..+.++||+.|.++.++|...++ .+..+.+|.-.|+.+.|+++..
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q-----~l~~~~Gh~kki~~v~~~~~~~-------------------- 274 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ-----ILATLKGHTKKITSVKFHKDLD-------------------- 274 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhh-----hhhhccCcceEEEEEEeccchh--------------------
Confidence 468888888887899999999999999988764 5667778888899999988754
Q ss_pred cccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCc
Q 013578 172 KAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLK 251 (440)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 251 (440)
.+++++.|..|++|.............|+.+
T Consensus 275 -------------------------------------------------~v~~aSad~~i~vws~~~~s~~~~~~~h~~~ 305 (506)
T KOG0289|consen 275 -------------------------------------------------TVITASADEIIRVWSVPLSSEPTSSRPHEEP 305 (506)
T ss_pred -------------------------------------------------heeecCCcceEEeeccccccCcccccccccc
Confidence 5677778888999999887777788899999
Q ss_pred ccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec--cccceEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 013578 252 NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG--HKSAVTWLCFAPNSEQIITASKDGTLRVWNIN 329 (440)
Q Consensus 252 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~ 329 (440)
|+.+..+|.|.||++++.||...+.|++.+. .+..... ..-.+++.+|||||..|.+|..|+.|+|||+.
T Consensus 306 V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~--------~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk 377 (506)
T KOG0289|consen 306 VTGLSLHPTGEYLLSASNDGTWAFSDISSGS--------QLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK 377 (506)
T ss_pred ceeeeeccCCcEEEEecCCceEEEEEccCCc--------EEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcC
Confidence 9999999999999999999999999998775 3333221 23458999999999999999999999999998
Q ss_pred ccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCC
Q 013578 330 VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPK 408 (440)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~ 408 (440)
.+.. .....+|..+|..++|+.+|-|||++. |+.|++||++..+...++.......|.++.|.+.
T Consensus 378 s~~~--------------~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~S 443 (506)
T KOG0289|consen 378 SQTN--------------VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQS 443 (506)
T ss_pred Cccc--------------cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCC
Confidence 6542 234457888999999999999999865 7789999999998888775444557999999999
Q ss_pred CCCCCCCcceEEEEeeCCCeEEEEe
Q 013578 409 TIPMGNQQVSVLATSSVDKKVKLWL 433 (440)
Q Consensus 409 ~~~~~~~~~~~l~t~~~Dg~i~vw~ 433 (440)
| .+|+.+|.|=+|++++
T Consensus 444 G--------t~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 444 G--------TYLGIAGSDLQVYICK 460 (506)
T ss_pred C--------CeEEeecceeEEEEEe
Confidence 8 8999998887777665
No 103
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=6.1e-26 Score=175.44 Aligned_cols=270 Identities=16% Similarity=0.222 Sum_probs=188.8
Q ss_pred ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
.+-++.||+++|+|++.+-+.++|+||+.|.++++||++++... .......+|..+.|+++|++++.++.+..+
T Consensus 44 rlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~l------a~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg 117 (327)
T KOG0643|consen 44 RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQL------ATWKTNSPVKRVDFSFGGNLILASTDKQMG 117 (327)
T ss_pred eeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEE------EEeecCCeeEEEeeccCCcEEEEEehhhcC
Confidence 57899999999999999999999999999999999999998642 223345889999999999999998876443
Q ss_pred --ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc
Q 013578 163 --CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK 240 (440)
Q Consensus 163 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 240 (440)
+.+.+++............ +.... ..+..+ ...+.+.+-++ .+++|..||.|..||+++++
T Consensus 118 ~~~~v~~fdi~~~~~~~~s~e------p~~kI---~t~~sk-------it~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~ 180 (327)
T KOG0643|consen 118 YTCFVSVFDIRDDSSDIDSEE------PYLKI---PTPDSK-------ITSALWGPLGE-TIIAGHEDGSISIYDARTGK 180 (327)
T ss_pred cceEEEEEEccCChhhhcccC------ceEEe---cCCccc-------eeeeeecccCC-EEEEecCCCcEEEEEcccCc
Confidence 4556665543321111100 00000 001111 12233356666 89999999999999999984
Q ss_pred -eeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC
Q 013578 241 -LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK 319 (440)
Q Consensus 241 -~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~ 319 (440)
.+...+.|...|+.+++++|..++++++.|.+-++||+++.. .+.++. ...+|++.+++|...+++.|+.
T Consensus 181 ~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~--------v~Kty~-te~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 181 ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLE--------VLKTYT-TERPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred eeeechhhhccccccccccCCcceEEecccCccceeeecccee--------eEEEee-ecccccceecccccceEEecCC
Confidence 456667888999999999999999999999999999986554 455554 4679999999998887777764
Q ss_pred CCcEEEEecCccccccCCCCc-cccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCC
Q 013578 320 DGTLRVWNINVRYHLDEDPKT-LKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVET 385 (440)
Q Consensus 320 dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~ 385 (440)
-...-+=-..++.-. ...+. ...++..+....+|-.+|++++|+|+|+..++|. ||.|++.....
T Consensus 252 qeA~dVTTT~~r~GK-FEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 252 QEAMDVTTTSTRAGK-FEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ceeeeeeeecccccc-hhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 322222111111000 00000 0112223445678889999999999999998865 89999875543
No 104
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.4e-25 Score=177.57 Aligned_cols=293 Identities=15% Similarity=0.200 Sum_probs=200.2
Q ss_pred eeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccc
Q 013578 94 VTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKA 173 (440)
Q Consensus 94 V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (440)
-.|+.|++.|.+||.|+.||.|.|||+.+.. ..+....|-.+|++++|+++|+.|++++.| ..+.+|+....
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-----iar~lsaH~~pi~sl~WS~dgr~LltsS~D---~si~lwDl~~g 97 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-----IARMLSAHVRPITSLCWSRDGRKLLTSSRD---WSIKLWDLLKG 97 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-----hhhhhhccccceeEEEecCCCCEeeeecCC---ceeEEEeccCC
Confidence 7899999999999999999999999999865 345667888999999999999999999988 56667766554
Q ss_pred cccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee-eeeC---CC
Q 013578 174 ISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG-NVDT---NQ 249 (440)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-~~~~---~~ 249 (440)
.......... ....+.+.|..++.++.+-.+..-.+.++..+.... .... ..
T Consensus 98 s~l~rirf~s------------------------pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln 153 (405)
T KOG1273|consen 98 SPLKRIRFDS------------------------PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLN 153 (405)
T ss_pred CceeEEEccC------------------------ccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccc
Confidence 3221111111 111122233333344444444334444443321110 0000 01
Q ss_pred CcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccc-cceEEEEEcCCCCEEEEEeCCCcEEEEec
Q 013578 250 LKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK-SAVTWLCFAPNSEQIITASKDGTLRVWNI 328 (440)
Q Consensus 250 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~p~~~~l~s~~~dg~i~iwd~ 328 (440)
....+..|.+.|+++++|...|.+.+||..+.+ ++..++-.. ..|.++.++-.|++|+..+.|..||.|++
T Consensus 154 ~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e--------~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~ 225 (405)
T KOG1273|consen 154 SSASHGVFDRRGKYIITGTSKGKLLVYDAETLE--------CVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEI 225 (405)
T ss_pred cccccccccCCCCEEEEecCcceEEEEecchhe--------eeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEeh
Confidence 123345789999999999999999999986654 566655444 67899999999999999999999999998
Q ss_pred CccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcCCccchhhhhccccCCeEEEEec
Q 013578 329 NVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSVETGKVLDTAEKAHEGEITCMAWA 406 (440)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~ 406 (440)
+.-.......... +......--......++.||.+|.|+++++ ...++||....|.++..+.........++.|+
T Consensus 226 ~di~~~~r~~e~e---~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~wh 302 (405)
T KOG1273|consen 226 SDIDDEGRDGEVE---PEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWH 302 (405)
T ss_pred hhhcccCccCCcC---hhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccc
Confidence 7332211110000 000011111234466899999999999876 57899999999999999853333678999999
Q ss_pred CCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 407 PKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 407 ~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
|-. ..+++- ..|.++||.....+
T Consensus 303 p~r--------p~i~si-~sg~v~iw~~~~~e 325 (405)
T KOG1273|consen 303 PVR--------PIIASI-ASGVVYIWAVVQVE 325 (405)
T ss_pred cce--------eeeeec-cCCceEEEEeeccc
Confidence 985 455555 78999999876654
No 105
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=2.9e-26 Score=180.99 Aligned_cols=174 Identities=16% Similarity=0.260 Sum_probs=146.7
Q ss_pred eeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCC
Q 013578 241 LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKD 320 (440)
Q Consensus 241 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d 320 (440)
.++++..|..+|+++.|+|....|++|+.|++|++||+...... +....+ ....+|.++.|+|.|.+|+.|..-
T Consensus 164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saK-----rA~K~~-qd~~~vrsiSfHPsGefllvgTdH 237 (430)
T KOG0640|consen 164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAK-----RAFKVF-QDTEPVRSISFHPSGEFLLVGTDH 237 (430)
T ss_pred eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHH-----HHHHHh-hccceeeeEeecCCCceEEEecCC
Confidence 46788889999999999999999999999999999998543210 011112 234689999999999999999999
Q ss_pred CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccC-
Q 013578 321 GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEG- 398 (440)
Q Consensus 321 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~- 398 (440)
.++++||+++.++.- +......|...|+++.+++.|++.++++ ||.|++||--+++++.++..+|.+
T Consensus 238 p~~rlYdv~T~Qcfv-----------sanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gs 306 (430)
T KOG0640|consen 238 PTLRLYDVNTYQCFV-----------SANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGS 306 (430)
T ss_pred CceeEEeccceeEee-----------ecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCc
Confidence 999999999876532 1223456778899999999999999987 999999999999999999989987
Q ss_pred CeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 399 EITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 399 ~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
.|.+..|..++ +++++.|.|..+++|.+.++.+
T Consensus 307 evcSa~Ftkn~--------kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 307 EVCSAVFTKNG--------KYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred eeeeEEEccCC--------eEEeecCCcceeeeeeecCCce
Confidence 68899999998 9999999999999999988764
No 106
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.2e-25 Score=173.23 Aligned_cols=249 Identities=18% Similarity=0.225 Sum_probs=183.6
Q ss_pred CCCCCCCCCcccCccc------cccccccCcceeEEEEcc-CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCC
Q 013578 68 HSHGDKDQNKRHHPLD------VNTLKGHGDSVTGLCFSS-DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGP 140 (440)
Q Consensus 68 ~~~~~~~~~~~~~~~~------~~~l~~H~~~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~ 140 (440)
.+.++.++....|... -..+.||.+.|-.++|+| ...+|++++.|++|++||+..+.+. .. ....+.
T Consensus 35 lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~-----~~-i~~~~e 108 (313)
T KOG1407|consen 35 LASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT-----AR-IETKGE 108 (313)
T ss_pred eeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE-----EE-eeccCc
Confidence 3566677777666553 235679999999999998 5579999999999999999977532 11 122245
Q ss_pred CceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCe
Q 013578 141 PTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGST 220 (440)
Q Consensus 141 v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (440)
-.-+.|+|+|.+++++..+.....+ +..+.......++ .....+..| ..++.
T Consensus 109 ni~i~wsp~g~~~~~~~kdD~it~i---d~r~~~~~~~~~~--~~e~ne~~w----------------------~~~nd- 160 (313)
T KOG1407|consen 109 NINITWSPDGEYIAVGNKDDRITFI---DARTYKIVNEEQF--KFEVNEISW----------------------NNSND- 160 (313)
T ss_pred ceEEEEcCCCCEEEEecCcccEEEE---Eecccceeehhcc--cceeeeeee----------------------cCCCC-
Confidence 5678999999999999888433333 2222211111111 011111222 33444
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~ 300 (440)
+++.....|.|.|.....-+++..++.|.....|+.|+|+|++||+|+.|..+.+||+... -++..+..+.-
T Consensus 161 ~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL--------iC~R~isRldw 232 (313)
T KOG1407|consen 161 LFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL--------ICERCISRLDW 232 (313)
T ss_pred EEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh--------hhheeeccccC
Confidence 5555555678999999999999999999999999999999999999999999999998543 37788888999
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe
Q 013578 301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT 373 (440)
Q Consensus 301 ~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 373 (440)
+|..+.|+-+|++||++|+|..|-|=+++++..+.+.+.. .+-..++|+|...+||.+
T Consensus 233 pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~---------------~~t~tVAWHPk~~LLAyA 290 (313)
T KOG1407|consen 233 PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCE---------------GPTFTVAWHPKRPLLAYA 290 (313)
T ss_pred ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeecc---------------CCceeEEecCCCceeeEE
Confidence 9999999999999999999999999999888765432222 234579999999999864
No 107
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.9e-25 Score=190.27 Aligned_cols=310 Identities=14% Similarity=0.196 Sum_probs=217.0
Q ss_pred cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC 163 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~ 163 (440)
-..+.||++.|.||...|.|.+|++|+.||+||||.+.++.+. .. ....+.|.+|+|+|.+..-+.+...+..
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcv-----r~-~~~d~~I~~vaw~P~~~~~vLAvA~~~~- 465 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCV-----RT-VQFDSEIRSVAWNPLSDLCVLAVAVGEC- 465 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEE-----EE-EeecceeEEEEecCCCCceeEEEEecCc-
Confidence 4578899999999999999999999999999999999988642 21 2233789999999988754444333222
Q ss_pred eEEeeccccccccc---------cccccCCCCCCceeeccccccc-----ceeEEEeecccccccCCCCCeEEEEeeC--
Q 013578 164 SLYMYGEEKAISTN---------EGKQQSKLPGPEIKWEHHKVHD-----KRAILTLFGASATYGTADGSTIIASCSE-- 227 (440)
Q Consensus 164 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~s~~~-- 227 (440)
+.+.+..-..... ..............|....... ...+........+.++..|. +|++...
T Consensus 466 -~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD-YlatV~~~~ 543 (733)
T KOG0650|consen 466 -VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD-YLATVMPDS 543 (733)
T ss_pred -eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCc-eEEEeccCC
Confidence 3333322211110 0001111122345676542222 12233333345566678888 6665443
Q ss_pred -CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEE
Q 013578 228 -GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLC 306 (440)
Q Consensus 228 -d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 306 (440)
...|.|.++.......-+....+.+.++.|+|...+|++++. ..|+|||+.... .+..+.....+|.+++
T Consensus 544 ~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqe--------lvKkL~tg~kwiS~ms 614 (733)
T KOG0650|consen 544 GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQE--------LVKKLLTGSKWISSMS 614 (733)
T ss_pred CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHH--------HHHHHhcCCeeeeeee
Confidence 345888998877666556556677899999999999999874 679999986533 5556666677899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcC-
Q 013578 307 FAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVE- 384 (440)
Q Consensus 307 ~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~- 384 (440)
.+|.|..|+.++.|+.+..+|+.-... +......|...++.++|++.-.++++|+ ||.+.||.-.
T Consensus 615 ihp~GDnli~gs~d~k~~WfDldlssk-------------Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~V 681 (733)
T KOG0650|consen 615 IHPNGDNLILGSYDKKMCWFDLDLSSK-------------PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMV 681 (733)
T ss_pred ecCCCCeEEEecCCCeeEEEEcccCcc-------------hhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeee
Confidence 999999999999999999999974321 2223345667788999999999999988 5888887432
Q ss_pred -----Ccc---chhhhhccccCC----eEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578 385 -----TGK---VLDTAEKAHEGE----ITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL 433 (440)
Q Consensus 385 -----~~~---~~~~~~~~h~~~----v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~ 433 (440)
..- ++..+ .+|... |.++.|+|.. .+|+++|.||+|++|.
T Consensus 682 Y~Dl~qnpliVPlK~L-~gH~~~~~~gVLd~~wHP~q--------pWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 682 YNDLLQNPLIVPLKRL-RGHEKTNDLGVLDTIWHPRQ--------PWLFSAGADGTIRLFT 733 (733)
T ss_pred ehhhhcCCceEeeeec-cCceeecccceEeecccCCC--------ceEEecCCCceEEeeC
Confidence 111 23444 577765 9999999998 7999999999999993
No 108
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=1.1e-25 Score=196.02 Aligned_cols=252 Identities=17% Similarity=0.271 Sum_probs=202.8
Q ss_pred CCCCCCCCCcccCcc------ccccccccCcceeE-EEEcc-CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCC
Q 013578 68 HSHGDKDQNKRHHPL------DVNTLKGHGDSVTG-LCFSS-DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGG 139 (440)
Q Consensus 68 ~~~~~~~~~~~~~~~------~~~~l~~H~~~V~~-l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~ 139 (440)
..+++.|++.+.|.. ..+.+++|.+-|.+ +++-+ |+-+|++|+.|.++.+|.+.... .+....+|..
T Consensus 28 i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~-----P~~~LkgH~s 102 (745)
T KOG0301|consen 28 IISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAE-----PLYTLKGHKS 102 (745)
T ss_pred EeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCC-----chhhhhcccc
Confidence 355667778888865 34667889998888 88886 56679999999999999998765 3456678888
Q ss_pred CCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCC
Q 013578 140 PPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGS 219 (440)
Q Consensus 140 ~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (440)
.|++++...++
T Consensus 103 nVC~ls~~~~~--------------------------------------------------------------------- 113 (745)
T KOG0301|consen 103 NVCSLSIGEDG--------------------------------------------------------------------- 113 (745)
T ss_pred ceeeeecCCcC---------------------------------------------------------------------
Confidence 88887754332
Q ss_pred eEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccc
Q 013578 220 TIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK 299 (440)
Q Consensus 220 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~ 299 (440)
.+++|+.|.++++|-. +++...+.+|+..|.+++.-|++ .+++|+.|.+|++|.-. ..+.++.+|.
T Consensus 114 -~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~----------~~l~tf~gHt 179 (745)
T KOG0301|consen 114 -TLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG----------TLLKTFSGHT 179 (745)
T ss_pred -ceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCC----------chhhhhccch
Confidence 5889999999999964 67777899999999999988887 88999999999999852 2688899999
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-ecCCEE
Q 013578 300 SAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-THGSTL 378 (440)
Q Consensus 300 ~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~i 378 (440)
+-|+++++-|++. |++++.||.|++|++.. .+ +....+|...+.+++...++..+++ |.|+++
T Consensus 180 D~VRgL~vl~~~~-flScsNDg~Ir~w~~~g-e~--------------l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtl 243 (745)
T KOG0301|consen 180 DCVRGLAVLDDSH-FLSCSNDGSIRLWDLDG-EV--------------LLEMHGHTNFVYSISMALSDGLIVSTGEDRTL 243 (745)
T ss_pred hheeeeEEecCCC-eEeecCCceEEEEeccC-ce--------------eeeeeccceEEEEEEecCCCCeEEEecCCceE
Confidence 9999999998654 88999999999999953 22 2344577888999996666665554 669999
Q ss_pred EEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 379 QWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 379 ~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
+||+.. ++.+.+. -....|+++.+-++| -+++|++||.||||...
T Consensus 244 riW~~~--e~~q~I~-lPttsiWsa~~L~Ng---------DIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 244 RIWKKD--ECVQVIT-LPTTSIWSAKVLLNG---------DIVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEeecC--ceEEEEe-cCccceEEEEEeeCC---------CEEEeccCceEEEEEec
Confidence 999987 6666664 233489999999886 58899999999999876
No 109
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.9e-26 Score=185.63 Aligned_cols=269 Identities=17% Similarity=0.269 Sum_probs=202.2
Q ss_pred CCCCCCCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCC
Q 013578 62 HSKPHSHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPP 137 (440)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~ 137 (440)
..++...++++.|+.+++|+. ++.+|++|.+.|..|++.. ..++|++.|++|+.|.++... ... ...
T Consensus 76 p~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p------~~t-ilg 146 (433)
T KOG0268|consen 76 PNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPP------LHT-ILG 146 (433)
T ss_pred cchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCc------cee-eec
Confidence 334566789999999999987 4678999999999999976 789999999999999987631 111 122
Q ss_pred CCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCC
Q 013578 138 GGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTAD 217 (440)
Q Consensus 138 ~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (440)
...+..+.-+..+..+++++. .+.+|+..... +...+.|..... .++.++|.
T Consensus 147 ~s~~~gIdh~~~~~~FaTcGe-----~i~IWD~~R~~-----------Pv~smswG~Dti------------~svkfNpv 198 (433)
T KOG0268|consen 147 KSVYLGIDHHRKNSVFATCGE-----QIDIWDEQRDN-----------PVSSMSWGADSI------------SSVKFNPV 198 (433)
T ss_pred cccccccccccccccccccCc-----eeeecccccCC-----------ccceeecCCCce------------eEEecCCC
Confidence 355667777777777777753 46666655432 111223322221 22334566
Q ss_pred CCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec
Q 013578 218 GSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG 297 (440)
Q Consensus 218 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 297 (440)
...+|++|..|+.|.+||++++.+++.+.. ...-+.++|+|.+-.|++|++|..++.||++... .++....+
T Consensus 199 ETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~-------~p~~v~~d 270 (433)
T KOG0268|consen 199 ETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS-------RPLNVHKD 270 (433)
T ss_pred cchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhc-------ccchhhcc
Confidence 666899999999999999999998877654 2345779999998899999999999999998766 36778899
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CC
Q 013578 298 HKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GS 376 (440)
Q Consensus 298 h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~ 376 (440)
|.+.|.+++|+|.|+-|++||.|.+|+||..+.+..-. .+ .. .....|.++.||.|.+|+++|+ |+
T Consensus 271 hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRd-------iY-----ht-kRMq~V~~Vk~S~Dskyi~SGSdd~ 337 (433)
T KOG0268|consen 271 HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRD-------IY-----HT-KRMQHVFCVKYSMDSKYIISGSDDG 337 (433)
T ss_pred cceeEEEeccCCCcchhccccccceEEEeecCCCcchh-------hh-----hH-hhhheeeEEEEeccccEEEecCCCc
Confidence 99999999999999999999999999999998553211 00 00 1123478999999999999987 79
Q ss_pred EEEEEEcCCccc
Q 013578 377 TLQWLSVETGKV 388 (440)
Q Consensus 377 ~i~i~d~~~~~~ 388 (440)
+|++|.....+.
T Consensus 338 nvRlWka~Asek 349 (433)
T KOG0268|consen 338 NVRLWKAKASEK 349 (433)
T ss_pred ceeeeecchhhh
Confidence 999998755443
No 110
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.2e-25 Score=184.50 Aligned_cols=202 Identities=17% Similarity=0.254 Sum_probs=163.5
Q ss_pred ccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCce-eeeee
Q 013578 213 YGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLV-KAVTS 291 (440)
Q Consensus 213 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~ 291 (440)
..+|.|. +++.|+..+.|++|.+.+|..+..+..|-..|+|+.|+-||.+|++|+.||.|.+|.+...-+... ....+
T Consensus 88 ~s~n~G~-~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p 166 (476)
T KOG0646|consen 88 ASSNLGY-FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKP 166 (476)
T ss_pred ecCCCce-EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccc
Confidence 3466676 777777999999999999999999999999999999999999999999999999999865332211 24457
Q ss_pred eeeeeccccceEEEEEcCCC--CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCE
Q 013578 292 VMQLKGHKSAVTWLCFAPNS--EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKI 369 (440)
Q Consensus 292 ~~~~~~h~~~v~~~~~~p~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 369 (440)
.+.+..|.-+|+.+...+.| .+|+|+|.|.++++||+..+..+.. + ..+..+.+++.+|-++.
T Consensus 167 ~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlt-------i--------~fp~si~av~lDpae~~ 231 (476)
T KOG0646|consen 167 LHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLT-------I--------TFPSSIKAVALDPAERV 231 (476)
T ss_pred eeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEE-------E--------ecCCcceeEEEcccccE
Confidence 88899999999999887753 5799999999999999997754321 1 11244778999999998
Q ss_pred EEEec-CCEEEEEEcCCcc----------------chhhhhccccC--CeEEEEecCCCCCCCCCcceEEEEeeCCCeEE
Q 013578 370 LAATH-GSTLQWLSVETGK----------------VLDTAEKAHEG--EITCMAWAPKTIPMGNQQVSVLATSSVDKKVK 430 (440)
Q Consensus 370 l~~~~-~~~i~i~d~~~~~----------------~~~~~~~~h~~--~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~ 430 (440)
+.+|. +|.|.+.++.... ....+ .+|.+ .|+|++.+-|+ .+|++|+.||+|+
T Consensus 232 ~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~-~Gh~~~~~ITcLais~Dg--------tlLlSGd~dg~Vc 302 (476)
T KOG0646|consen 232 VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVL-VGHENESAITCLAISTDG--------TLLLSGDEDGKVC 302 (476)
T ss_pred EEecCCcceEEeeehhcCCcccccccccccccccceeeee-ccccCCcceeEEEEecCc--------cEEEeeCCCCCEE
Confidence 88876 8999888764322 22333 57888 99999999999 8999999999999
Q ss_pred EEeCCCCCC
Q 013578 431 LWLAPSLES 439 (440)
Q Consensus 431 vw~~~~~~~ 439 (440)
|||+.+.++
T Consensus 303 vWdi~S~Q~ 311 (476)
T KOG0646|consen 303 VWDIYSKQC 311 (476)
T ss_pred EEecchHHH
Confidence 999977543
No 111
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=2e-25 Score=204.34 Aligned_cols=272 Identities=22% Similarity=0.312 Sum_probs=197.9
Q ss_pred CCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeec-ccccccC
Q 013578 137 PGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFG-ASATYGT 215 (440)
Q Consensus 137 ~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 215 (440)
++..|.++..+|++..+++++...++... +|+.............. ++ .+ ...+..+.+ ..++.++
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~-iW~~~~vl~~~~~~~~~-l~----------k~-l~~m~~h~~sv~CVR~S 78 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIV-IWSQDPVLDEKEEKNEN-LP----------KH-LCTMDDHDGSVNCVRFS 78 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccce-eeccccccchhhhhhcc-cc----------hh-heeeccccCceeEEEEC
Confidence 34568999999999999999833322222 77665543221111110 11 01 111222222 3344479
Q ss_pred CCCCeEEEEeeCCceEEEEeCCC------------------CceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEE
Q 013578 216 ADGSTIIASCSEGTDISIWHGKT------------------GKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWE 277 (440)
Q Consensus 216 ~~~~~~l~s~~~d~~i~vwd~~~------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d 277 (440)
+||+ +|++|++|+.|.+|+... .+.+..+.+|...|..++|+|++.+|++++.|++|.||+
T Consensus 79 ~dG~-~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn 157 (942)
T KOG0973|consen 79 PDGS-YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWN 157 (942)
T ss_pred CCCC-eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEc
Confidence 9999 999999999999998762 135667889999999999999999999999999999999
Q ss_pred eEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeee
Q 013578 278 IVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQ 357 (440)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (440)
.++.. .+..+.+|.+.|..+.|.|-|++||+-+.|++|++|++..-.. .+.+..+... ......
T Consensus 158 ~~tF~--------~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i-------~k~It~pf~~-~~~~T~ 221 (942)
T KOG0973|consen 158 AKTFE--------LLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGI-------EKSITKPFEE-SPLTTF 221 (942)
T ss_pred cccce--------eeeeeecccccccceEECCccCeeeeecCCceEEEEEccccee-------eEeeccchhh-CCCcce
Confidence 86654 7889999999999999999999999999999999999764211 1222222221 222344
Q ss_pred eeeEEeCCCCCEEEEec-----CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCC----C-CCcc----eEEEEe
Q 013578 358 YDRLSLSSDGKILAATH-----GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPM----G-NQQV----SVLATS 423 (440)
Q Consensus 358 v~~~~~s~~g~~l~~~~-----~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~----~-~~~~----~~l~t~ 423 (440)
+.+++|||||++|++.. ...+.|.+..+.+.-..+ .||.+++.+++|+|.-..- + ..+. ..+|+|
T Consensus 222 f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~L-vGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Avg 300 (942)
T KOG0973|consen 222 FLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDL-VGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVG 300 (942)
T ss_pred eeecccCCCcCeecchhhccCCcceeEEEecCCceeeeee-ecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEe
Confidence 78999999999999853 358999999988888888 5999999999999852110 0 0111 278999
Q ss_pred eCCCeEEEEeCCCCCC
Q 013578 424 SVDKKVKLWLAPSLES 439 (440)
Q Consensus 424 ~~Dg~i~vw~~~~~~~ 439 (440)
|.|++|.||.....+|
T Consensus 301 SqDrSlSVW~T~~~RP 316 (942)
T KOG0973|consen 301 SQDRSLSVWNTALPRP 316 (942)
T ss_pred cCCccEEEEecCCCCc
Confidence 9999999999876554
No 112
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.6e-25 Score=196.77 Aligned_cols=220 Identities=18% Similarity=0.173 Sum_probs=163.2
Q ss_pred cccCccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEE
Q 013578 77 KRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVA 156 (440)
Q Consensus 77 ~~~~~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~ 156 (440)
-.+.+.+++.|.||.+.|..|.||.+ ++|+++|.|+|||||++....+ + ..+.|...|+||+|+|...
T Consensus 355 f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~C-----L-~~F~HndfVTcVaFnPvDD----- 422 (712)
T KOG0283|consen 355 FVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKEC-----L-KVFSHNDFVTCVAFNPVDD----- 422 (712)
T ss_pred ccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcce-----e-eEEecCCeeEEEEecccCC-----
Confidence 34456789999999999999999954 5999999999999999986542 2 2346779999999998532
Q ss_pred eecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeC
Q 013578 157 THNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHG 236 (440)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~ 236 (440)
+ ++++|+-|+.||||++
T Consensus 423 --------------------------------------------------------------r-yFiSGSLD~KvRiWsI 439 (712)
T KOG0283|consen 423 --------------------------------------------------------------R-YFISGSLDGKVRLWSI 439 (712)
T ss_pred --------------------------------------------------------------C-cEeecccccceEEeec
Confidence 2 8999999999999999
Q ss_pred CCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee-eeccccceEEEEEcCCC-CEE
Q 013578 237 KTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ-LKGHKSAVTWLCFAPNS-EQI 314 (440)
Q Consensus 237 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~p~~-~~l 314 (440)
...+.+.....+ .-|++++|.|||+..++|+.+|.+++|+....+-........... -..|. .|+++.|.|.. ..+
T Consensus 440 ~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~v 517 (712)
T KOG0283|consen 440 SDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEV 517 (712)
T ss_pred CcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeE
Confidence 988777666654 679999999999999999999999999986443111000000000 01133 79999999844 357
Q ss_pred EEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCC
Q 013578 315 ITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVET 385 (440)
Q Consensus 315 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~ 385 (440)
+..+.|..|||+|.+....+..... ......-...+|+.||++|++++ |..|++|+...
T Consensus 518 LVTSnDSrIRI~d~~~~~lv~KfKG------------~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 518 LVTSNDSRIRIYDGRDKDLVHKFKG------------FRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred EEecCCCceEEEeccchhhhhhhcc------------cccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 7788899999999975543321110 01111123588999999999876 88999999743
No 113
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=5e-24 Score=185.30 Aligned_cols=256 Identities=21% Similarity=0.270 Sum_probs=203.5
Q ss_pred ccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEee
Q 013578 89 GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMY 168 (440)
Q Consensus 89 ~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~ 168 (440)
--..+|.+|||+.+.+.||.+-.||.|.+|++...- ........+.++.|.+++|.+.+
T Consensus 23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w---~~~~vi~g~~drsIE~L~W~e~~------------------ 81 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW---FLEPVIHGPEDRSIESLAWAEGG------------------ 81 (691)
T ss_pred eeccceEEEEEeccCCceeeeccCCcEEEEccCCCc---eeeEEEecCCCCceeeEEEccCC------------------
Confidence 346789999999999999999999999999998642 22233334666789999998443
Q ss_pred ccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCC
Q 013578 169 GEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN 248 (440)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 248 (440)
.|++.+.+|.|.-||+.++++...+...
T Consensus 82 ----------------------------------------------------RLFS~g~sg~i~EwDl~~lk~~~~~d~~ 109 (691)
T KOG2048|consen 82 ----------------------------------------------------RLFSSGLSGSITEWDLHTLKQKYNIDSN 109 (691)
T ss_pred ----------------------------------------------------eEEeecCCceEEEEecccCceeEEecCC
Confidence 5778888999999999999999999999
Q ss_pred CCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEec
Q 013578 249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNI 328 (440)
Q Consensus 249 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~ 328 (440)
.+.|.+++.+|.+..+++|++||.+..++...+. ......+...++.|.+++|+|++..|++|+.||.|++||.
T Consensus 110 gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~------I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~ 183 (691)
T KOG2048|consen 110 GGAIWSIAINPENTILAIGCDDGVLYDFSIGPDK------ITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDV 183 (691)
T ss_pred CcceeEEEeCCccceEEeecCCceEEEEecCCce------EEEEeecccccceEEEEEecCCccEEEecccCceEEEEEc
Confidence 9999999999999999999999955555543322 2223334445789999999999999999999999999999
Q ss_pred CccccccCCCCccccccccccC-CCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEecC
Q 013578 329 NVRYHLDEDPKTLKVLPIPLLD-SNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAP 407 (440)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~ 407 (440)
..+..+. ........ ..+...-|.++.|-.++.++.+-+.|.|.+||...+.++..+ ..|.+.|.+++..+
T Consensus 184 ~~~~t~~-------~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~-~~h~adVl~Lav~~ 255 (691)
T KOG2048|consen 184 KSGQTLH-------IITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSH-SCHDADVLALAVAD 255 (691)
T ss_pred CCCceEE-------EeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhh-hhhhcceeEEEEcC
Confidence 9775442 11111111 122455677888887776655556899999999999999998 58999999999999
Q ss_pred CCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 408 KTIPMGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 408 ~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
++ .+++++|.|+.|..+...+.++
T Consensus 256 ~~--------d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 256 NE--------DRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred CC--------CeEEEccCCCceEEEEecCCcc
Confidence 97 8999999999999998877643
No 114
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.5e-26 Score=196.95 Aligned_cols=266 Identities=17% Similarity=0.264 Sum_probs=211.0
Q ss_pred CCCCCCCCCCcccCcc----------ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCC
Q 013578 67 SHSHGDKDQNKRHHPL----------DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLP 136 (440)
Q Consensus 67 ~~~~~~~~~~~~~~~~----------~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~ 136 (440)
...+++.|+..+.|.. .+..++.|.+.|+.+....+|+.|+++|.|-+|++|+...... -+......
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~---~c~stir~ 115 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT---FCMSTIRT 115 (735)
T ss_pred eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc---hhHhhhhc
Confidence 4567788888887753 3667899999999999999999999999999999999886642 24455667
Q ss_pred CCCCCceEEEc-cCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccC
Q 013578 137 PGGPPTAVAFA-DNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGT 215 (440)
Q Consensus 137 ~~~~v~~v~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (440)
|...|.++++- ++.
T Consensus 116 H~DYVkcla~~ak~~----------------------------------------------------------------- 130 (735)
T KOG0308|consen 116 HKDYVKCLAYIAKNN----------------------------------------------------------------- 130 (735)
T ss_pred ccchheeeeecccCc-----------------------------------------------------------------
Confidence 88899998873 221
Q ss_pred CCCCeEEEEeeCCceEEEEeCCCCc--eeee--------ee-CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCC
Q 013578 216 ADGSTIIASCSEGTDISIWHGKTGK--LLGN--------VD-TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDG 284 (440)
Q Consensus 216 ~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~--------~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~ 284 (440)
.++++|+-|+.|.+||+.++. .+.. +. ++...+.+++.++.|..|++|+..+.|++||.++.+
T Consensus 131 ----~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~-- 204 (735)
T KOG0308|consen 131 ----ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK-- 204 (735)
T ss_pred ----eeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccccc--
Confidence 178999999999999999772 2222 22 567789999999999999999999999999998877
Q ss_pred ceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeC
Q 013578 285 LVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLS 364 (440)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 364 (440)
.+..++||...|..+..++||+.++++|.||+|++||+...+|+.. ...|...|.++..+
T Consensus 205 ------kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T--------------~~vH~e~VWaL~~~ 264 (735)
T KOG0308|consen 205 ------KIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLAT--------------YIVHKEGVWALQSS 264 (735)
T ss_pred ------ceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeee--------------EEeccCceEEEeeC
Confidence 6888999999999999999999999999999999999997766532 12344558899999
Q ss_pred CCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 365 SDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 365 ~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
|+-..+.+|+ |+.|+.-|+.+......+ -....+|..+..+... .-+-.+..|+.|+-|...
T Consensus 265 ~sf~~vYsG~rd~~i~~Tdl~n~~~~tli-ck~daPv~~l~~~~~~--------~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 265 PSFTHVYSGGRDGNIYRTDLRNPAKSTLI-CKEDAPVLKLHLHEHD--------NSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred CCcceEEecCCCCcEEecccCCchhheEe-ecCCCchhhhhhcccc--------CCceeeeccccceecCCc
Confidence 9999888876 899999999885433333 2355567777777543 344667778888888765
No 115
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1.1e-25 Score=184.34 Aligned_cols=259 Identities=16% Similarity=0.215 Sum_probs=196.2
Q ss_pred CCCCCCCCCCcccCccc------cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCC
Q 013578 67 SHSHGDKDQNKRHHPLD------VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGP 140 (440)
Q Consensus 67 ~~~~~~~~~~~~~~~~~------~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~ 140 (440)
..+++..|+.++.|... +.+|.|-.+.|+.+.|.++++++++++.|+.+++|+++... ......+|...
T Consensus 189 tlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r-----~~~TLsGHtdk 263 (459)
T KOG0288|consen 189 TLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR-----LRHTLSGHTDK 263 (459)
T ss_pred hhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchh-----hhhhhcccccc
Confidence 35778888888888653 56788888999999999999999999999999999998764 34566779999
Q ss_pred CceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCe
Q 013578 141 PTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGST 220 (440)
Q Consensus 141 v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (440)
|+++.|......+++++.+ ..+..|+..+.... +.+........+... ..
T Consensus 264 Vt~ak~~~~~~~vVsgs~D---RtiK~WDl~k~~C~------------------------kt~l~~S~cnDI~~~---~~ 313 (459)
T KOG0288|consen 264 VTAAKFKLSHSRVVSGSAD---RTIKLWDLQKAYCS------------------------KTVLPGSQCNDIVCS---IS 313 (459)
T ss_pred eeeehhhccccceeecccc---chhhhhhhhhhhee------------------------ccccccccccceEec---ce
Confidence 9999999887777777776 45555555443211 111111111111111 12
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec---
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG--- 297 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--- 297 (440)
.+++|-.|+.|++||.++..+...+..+. .|+++..++++..|.+.+.|.++.+.|++... ....+.+
T Consensus 314 ~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~e--------I~~~~sA~g~ 384 (459)
T KOG0288|consen 314 DVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKE--------IRQTFSAEGF 384 (459)
T ss_pred eeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeeccccc--------EEEEeecccc
Confidence 68889999999999999999999998765 89999999999999999999999999997654 2222221
Q ss_pred -cccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-C
Q 013578 298 -HKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-G 375 (440)
Q Consensus 298 -h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~ 375 (440)
.....+.+.|||++.|+++||.||.|+||++.++++... .........|++++|+|.|..|++++ +
T Consensus 385 k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~------------l~~s~s~~aI~s~~W~~sG~~Llsadk~ 452 (459)
T KOG0288|consen 385 KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKV------------LSLSTSNAAITSLSWNPSGSGLLSADKQ 452 (459)
T ss_pred ccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEE------------eccCCCCcceEEEEEcCCCchhhcccCC
Confidence 123378899999999999999999999999998765321 11122223699999999999888876 7
Q ss_pred CEEEEE
Q 013578 376 STLQWL 381 (440)
Q Consensus 376 ~~i~i~ 381 (440)
+.+.+|
T Consensus 453 ~~v~lW 458 (459)
T KOG0288|consen 453 KAVTLW 458 (459)
T ss_pred cceEec
Confidence 788887
No 116
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=1.4e-23 Score=183.08 Aligned_cols=278 Identities=14% Similarity=0.154 Sum_probs=185.3
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccccccccccccc
Q 013578 103 GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQ 182 (440)
Q Consensus 103 g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (440)
++.++|++.|+.|++||+.++.. ......+ ..+..++|+|+++.+++++.. ...+.+|+..........
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~-----~~~~~~~-~~~~~l~~~~dg~~l~~~~~~--~~~v~~~d~~~~~~~~~~--- 69 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEV-----TRTFPVG-QRPRGITLSKDGKLLYVCASD--SDTIQVIDLATGEVIGTL--- 69 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCce-----EEEEECC-CCCCceEECCCCCEEEEEECC--CCeEEEEECCCCcEEEec---
Confidence 35788999999999999987642 2222222 447789999999987655433 245666765432110000
Q ss_pred CCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCC
Q 013578 183 SKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGR 262 (440)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 262 (440)
. .........++++++.++++++.++.|++||+.+++.+..+..+ ..+..++|+|+|+
T Consensus 70 ----------~-----------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~ 127 (300)
T TIGR03866 70 ----------P-----------SGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGK 127 (300)
T ss_pred ----------c-----------CCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCC
Confidence 0 00011123347888856667777899999999988877776543 3467899999999
Q ss_pred eEEEEecCCC-EEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEE-eCCCcEEEEecCccccccCCCCc
Q 013578 263 FLAAAAFTAD-VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA-SKDGTLRVWNINVRYHLDEDPKT 340 (440)
Q Consensus 263 ~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~ 340 (440)
+++++..++. +.+||..... ...... ....+.+++|+|++++|+.+ ..++.|++||++++........
T Consensus 128 ~l~~~~~~~~~~~~~d~~~~~--------~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~- 197 (300)
T TIGR03866 128 IVVNTSETTNMAHFIDTKTYE--------IVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITF- 197 (300)
T ss_pred EEEEEecCCCeEEEEeCCCCe--------EEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeee-
Confidence 9999987754 6677865432 222222 22346789999999988544 4699999999987654321110
Q ss_pred cccccccccCCCCCeeeeeeEEeCCCCCEEEE--ecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcce
Q 013578 341 LKVLPIPLLDSNGATLQYDRLSLSSDGKILAA--THGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVS 418 (440)
Q Consensus 341 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~ 418 (440)
..............++|+|+++++++ +.++.+.+||..+++....+. +...+.+++|+|++ .
T Consensus 198 ------~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~g--------~ 261 (300)
T TIGR03866 198 ------EIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--VGQRVWQLAFTPDE--------K 261 (300)
T ss_pred ------cccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--eCCCcceEEECCCC--------C
Confidence 00000001112346889999997554 446789999999988776553 45679999999998 6
Q ss_pred EEEEe-eCCCeEEEEeCCCCCC
Q 013578 419 VLATS-SVDKKVKLWLAPSLES 439 (440)
Q Consensus 419 ~l~t~-~~Dg~i~vw~~~~~~~ 439 (440)
+|+++ +.+|.|++||+.++++
T Consensus 262 ~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 262 YLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred EEEEEcCCCCeEEEEECCCCcE
Confidence 77765 5699999999998763
No 117
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=5.8e-24 Score=168.02 Aligned_cols=295 Identities=16% Similarity=0.209 Sum_probs=203.7
Q ss_pred cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeec
Q 013578 90 HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYG 169 (440)
Q Consensus 90 H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~ 169 (440)
-.+.|..+.|+|.++.|+.++.||++++|++...+ +.....|+.++.+++|.+ ...+++++.+ ..+..++
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~------l~~~~~~~~plL~c~F~d-~~~~~~G~~d---g~vr~~D 81 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS------LKLKFKHGAPLLDCAFAD-ESTIVTGGLD---GQVRRYD 81 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh------hhhheecCCceeeeeccC-CceEEEeccC---ceEEEEE
Confidence 36789999999999999999999999999998763 344556789999999987 4567777766 3555555
Q ss_pred cccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCC
Q 013578 170 EEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQ 249 (440)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 249 (440)
........- ..|...+ .++...+. ...+++|+.|++|++||.+.......+....
T Consensus 82 ln~~~~~~i-----------------gth~~~i-------~ci~~~~~-~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k 136 (323)
T KOG1036|consen 82 LNTGNEDQI-----------------GTHDEGI-------RCIEYSYE-VGCVISGSWDKTIKFWDPRNKVVVGTFDQGK 136 (323)
T ss_pred ecCCcceee-----------------ccCCCce-------EEEEeecc-CCeEEEcccCccEEEEeccccccccccccCc
Confidence 443311100 0011111 11111222 2279999999999999999765665555433
Q ss_pred CcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 013578 250 LKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNIN 329 (440)
Q Consensus 250 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~ 329 (440)
.|.++. -.|+.|++|+.+..+.+||++...... ...-...+-.+.|+++-|++.-+++++-||.|.+=.++
T Consensus 137 -kVy~~~--v~g~~LvVg~~~r~v~iyDLRn~~~~~------q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d 207 (323)
T KOG1036|consen 137 -KVYCMD--VSGNRLVVGTSDRKVLIYDLRNLDEPF------QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFD 207 (323)
T ss_pred -eEEEEe--ccCCEEEEeecCceEEEEEcccccchh------hhccccceeEEEEEEEecCCCceEEEeecceEEEEccC
Confidence 565554 458899999999999999998765211 11122344568999999998889999999999886666
Q ss_pred ccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcCCccchhhhhccccCCeEEEEecCC
Q 013578 330 VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPK 408 (440)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~ 408 (440)
...+.+...-..++... .........+|++++|+|--..+|+| +||.|.+||..+.+.+..+. .....|..++|+.+
T Consensus 208 ~s~~~~skkyaFkCHr~-~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~-~~~~SI~slsfs~d 285 (323)
T KOG1036|consen 208 DSEEAQSKKYAFKCHRL-SEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLA-KYETSISSLSFSMD 285 (323)
T ss_pred CchHHhhhceeEEeeec-ccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhcc-CCCCceEEEEeccC
Confidence 44222211111111111 11222334679999999998888885 59999999999999999884 55678999999999
Q ss_pred CCCCCCCcceEEEEeeC-----CCe-------EEEEeCCCCC
Q 013578 409 TIPMGNQQVSVLATSSV-----DKK-------VKLWLAPSLE 438 (440)
Q Consensus 409 ~~~~~~~~~~~l~t~~~-----Dg~-------i~vw~~~~~~ 438 (440)
| ..||.++. ... |.|.++...|
T Consensus 286 G--------~~LAia~sy~ye~~~~~~~~~~~i~I~~l~d~e 319 (323)
T KOG1036|consen 286 G--------SLLAIASSYQYERADTPTHERNAIFIRDLTDYE 319 (323)
T ss_pred C--------CeEEEEechhhhcCCCCCCCCCceEEEeccccc
Confidence 9 89998875 222 6676665544
No 118
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=2.8e-25 Score=194.27 Aligned_cols=262 Identities=16% Similarity=0.210 Sum_probs=204.1
Q ss_pred ccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecC
Q 013578 81 PLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL 160 (440)
Q Consensus 81 ~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~ 160 (440)
++.....-+-...|++++.||+|++||+|..-|++|||++...+. ......|+..|.++.|+....
T Consensus 449 dka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~-----~~~~eAHesEilcLeyS~p~~--------- 514 (1080)
T KOG1408|consen 449 DKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY-----TCFMEAHESEILCLEYSFPVL--------- 514 (1080)
T ss_pred cccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh-----hhheecccceeEEEeecCchh---------
Confidence 333444445677899999999999999999999999999986542 334457889999999874211
Q ss_pred CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC-
Q 013578 161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG- 239 (440)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~- 239 (440)
+..+|++++.|..|++||....
T Consensus 515 ---------------------------------------------------------~~kLLASasrdRlIHV~Dv~rny 537 (1080)
T KOG1408|consen 515 ---------------------------------------------------------TNKLLASASRDRLIHVYDVKRNY 537 (1080)
T ss_pred ---------------------------------------------------------hhHhhhhccCCceEEEEeccccc
Confidence 1118999999999999998744
Q ss_pred ceeeeeeCCCCcccEEEecCCC--CeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEE
Q 013578 240 KLLGNVDTNQLKNNMAAISPNG--RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA 317 (440)
Q Consensus 240 ~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~ 317 (440)
.+++++..|...|+++.|.-.| ..+++++.|..|.+--.+...++.. + ...+.......+..|+..|..++++++
T Consensus 538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~--f-~r~t~t~~ktTlYDm~Vdp~~k~v~t~ 614 (1080)
T KOG1408|consen 538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRL--F-PRHTQTLSKTTLYDMAVDPTSKLVVTV 614 (1080)
T ss_pred chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCcee--c-cccccccccceEEEeeeCCCcceEEEE
Confidence 5678899999999999998877 6788888888776433322221110 0 111111123568899999999999999
Q ss_pred eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcCCccchhhhhccc
Q 013578 318 SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVETGKVLDTAEKAH 396 (440)
Q Consensus 318 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~~~~~~~~~~~~h 396 (440)
+.|..|+|||++.++..+. +....++....-.+...|.|-|+|+. +|.++.++|..+|+++... .+|
T Consensus 615 cQDrnirif~i~sgKq~k~-----------FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m-~GH 682 (1080)
T KOG1408|consen 615 CQDRNIRIFDIESGKQVKS-----------FKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM-TGH 682 (1080)
T ss_pred ecccceEEEeccccceeee-----------ecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh-cCc
Confidence 9999999999998765432 22333455556689999999999984 6999999999999999998 599
Q ss_pred cCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 397 EGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 397 ~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
...|+.+.|.+|- +.|++.+.||.|.||.++.
T Consensus 683 sE~VTG~kF~nDC--------kHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 683 SEAVTGVKFLNDC--------KHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred chheeeeeecccc--------hhheeecCCceEEEEECch
Confidence 9999999999998 8999999999999999864
No 119
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=3.2e-24 Score=186.90 Aligned_cols=302 Identities=18% Similarity=0.252 Sum_probs=212.7
Q ss_pred ccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCc----------------------------------------
Q 013578 87 LKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSK---------------------------------------- 126 (440)
Q Consensus 87 l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~---------------------------------------- 126 (440)
+.||++.|+++.|+|++..|+++|.|+++.+|.-++....
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL 342 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence 4599999999999999999999999999999987653110
Q ss_pred -------ceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecc---cc
Q 013578 127 -------SFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEH---HK 196 (440)
Q Consensus 127 -------~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 196 (440)
.+.......+|-..|.+++|+|.|.+|++++.|.....+.-|..+.. |.. +.
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~------------------wHEiaRPQ 404 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE------------------WHEIARPQ 404 (764)
T ss_pred EeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccc------------------eeeecccc
Confidence 01111223467788999999999999999998866666555521111 111 01
Q ss_pred cccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCC---------------------------------------
Q 013578 197 VHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK--------------------------------------- 237 (440)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~--------------------------------------- 237 (440)
.|.... .++.+.+ ++..+++|.+...+|+|+..
T Consensus 405 iHGyDl-------~c~~~vn-~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~ 476 (764)
T KOG1063|consen 405 IHGYDL-------TCLSFVN-EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFP 476 (764)
T ss_pred cccccc-------eeeehcc-CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcc
Confidence 111111 1111111 13356666666666666431
Q ss_pred ----CCc---------------------------------eeeeeeCCCCcccEEEecCCCCeEEEEecCC-----CEEE
Q 013578 238 ----TGK---------------------------------LLGNVDTNQLKNNMAAISPNGRFLAAAAFTA-----DVKV 275 (440)
Q Consensus 238 ----~~~---------------------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i 275 (440)
+|. .+.++.+|...|.+++.+|+++++|+++... .|++
T Consensus 477 ~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~l 556 (764)
T KOG1063|consen 477 GETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRL 556 (764)
T ss_pred cccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEE
Confidence 000 0123456778899999999999999998644 4899
Q ss_pred EEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCe
Q 013578 276 WEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGAT 355 (440)
Q Consensus 276 ~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (440)
|+..+-. ....+.+|+-.|+.++|+|||++|++.|.|+++.+|......... ........|.
T Consensus 557 w~t~~W~--------~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e----------~~fa~~k~Ht 618 (764)
T KOG1063|consen 557 WNTANWL--------QVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE----------FRFACLKAHT 618 (764)
T ss_pred Eeccchh--------hhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchh----------hhhccccccc
Confidence 9975443 566799999999999999999999999999999999985332111 1122356778
Q ss_pred eeeeeEEeCCCCCEEEEec-CCEEEEEEcCCc--cchhh-hhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEE
Q 013578 356 LQYDRLSLSSDGKILAATH-GSTLQWLSVETG--KVLDT-AEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKL 431 (440)
Q Consensus 356 ~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~--~~~~~-~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~v 431 (440)
.-|..+.|+|++.++++++ |..|.+|..... +.+.. ....+..+|++++|.|-. ...+...++.|-+.|.|.+
T Consensus 619 RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~---~~e~~~~vavGle~GeI~l 695 (764)
T KOG1063|consen 619 RIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVD---HNEKGDVVAVGLEKGEIVL 695 (764)
T ss_pred eEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccc---cccccceEEEEecccEEEE
Confidence 8899999999999999987 999999998877 43333 113588999999999864 1122247788888999999
Q ss_pred EeCC
Q 013578 432 WLAP 435 (440)
Q Consensus 432 w~~~ 435 (440)
|+..
T Consensus 696 ~~~~ 699 (764)
T KOG1063|consen 696 WRRK 699 (764)
T ss_pred Eecc
Confidence 9965
No 120
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.2e-26 Score=202.74 Aligned_cols=238 Identities=16% Similarity=0.325 Sum_probs=204.8
Q ss_pred cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC 163 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~ 163 (440)
.+.+..|...|.|+..-..++.+++|+.|-.+-+|.+..... ...+..|..+|.++.|+++..
T Consensus 21 ~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~-----i~S~~~hespIeSl~f~~~E~------------ 83 (825)
T KOG0267|consen 21 TREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA-----ITSLTGHESPIESLTFDTSER------------ 83 (825)
T ss_pred chhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCch-----hheeeccCCcceeeecCcchh------------
Confidence 355678999999999977889999999999999999875542 233678889999999987643
Q ss_pred eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee
Q 013578 164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG 243 (440)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 243 (440)
++++|+.+|+|++||++..+.++
T Consensus 84 ---------------------------------------------------------LlaagsasgtiK~wDleeAk~vr 106 (825)
T KOG0267|consen 84 ---------------------------------------------------------LLAAGSASGTIKVWDLEEAKIVR 106 (825)
T ss_pred ---------------------------------------------------------hhcccccCCceeeeehhhhhhhh
Confidence 68888999999999999999999
Q ss_pred eeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcE
Q 013578 244 NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTL 323 (440)
Q Consensus 244 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i 323 (440)
++.+|...+..+.|+|-+.+++.|+.|+.+++||++... +.+.+.+|...|.++.|+|+|+++++++.|.++
T Consensus 107 tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G--------c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tv 178 (825)
T KOG0267|consen 107 TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG--------CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTV 178 (825)
T ss_pred hhhccccCcceeeeccceEEeccccccccceehhhhccC--------ceeeecCCcceeEEEeecCCCceeeccCCccee
Confidence 999999999999999999999999999999999998665 888999999999999999999999999999999
Q ss_pred EEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEE
Q 013578 324 RVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITC 402 (440)
Q Consensus 324 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~ 402 (440)
+|||+..++.+ .....|...+..+.|+|..-+++.|+ |+.+++||+++-+.+.... .....|.+
T Consensus 179 ki~d~~agk~~--------------~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~-~~~~~v~~ 243 (825)
T KOG0267|consen 179 KIWDLTAGKLS--------------KEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK-PETDGVRS 243 (825)
T ss_pred eeecccccccc--------------cccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC-CccCCcee
Confidence 99999866543 23345666788888999999999876 9999999999999988874 56789999
Q ss_pred EEecCCCCCCCCCcceEEEEeeCC
Q 013578 403 MAWAPKTIPMGNQQVSVLATSSVD 426 (440)
Q Consensus 403 v~~~~~~~~~~~~~~~~l~t~~~D 426 (440)
.+|+|++ ..+++|..+
T Consensus 244 ~~fn~~~--------~~~~~G~q~ 259 (825)
T KOG0267|consen 244 LAFNPDG--------KIVLSGEQI 259 (825)
T ss_pred eeecCCc--------eeeecCchh
Confidence 9999998 666666543
No 121
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=1.6e-26 Score=183.70 Aligned_cols=170 Identities=21% Similarity=0.339 Sum_probs=145.4
Q ss_pred CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN 327 (440)
Q Consensus 248 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd 327 (440)
....+.|..|+|||++|++|+.||.|.+|+..+++-..-..++....+-.+..+|.|+.|+.|...|++|+.||.|++|.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 34567899999999999999999999999987776322222223344556889999999999999999999999999999
Q ss_pred cCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEec
Q 013578 328 INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWA 406 (440)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~ 406 (440)
++++.|++.. ...|...|+++.||.|+..+.+++ |..+++.-+++|+++..+ ++|..-|+...|.
T Consensus 292 i~tG~ClRrF-------------drAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf-rGHsSyvn~a~ft 357 (508)
T KOG0275|consen 292 IETGQCLRRF-------------DRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF-RGHSSYVNEATFT 357 (508)
T ss_pred EecchHHHHh-------------hhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHh-cCccccccceEEc
Confidence 9999876432 124566799999999998777755 999999999999999999 6999999999999
Q ss_pred CCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 407 PKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 407 ~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
++| ..+++++.||+|+||+..+.+|
T Consensus 358 ~dG--------~~iisaSsDgtvkvW~~KtteC 382 (508)
T KOG0275|consen 358 DDG--------HHIISASSDGTVKVWHGKTTEC 382 (508)
T ss_pred CCC--------CeEEEecCCccEEEecCcchhh
Confidence 999 8999999999999999998877
No 122
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=3.3e-24 Score=190.60 Aligned_cols=333 Identities=18% Similarity=0.240 Sum_probs=227.9
Q ss_pred CCCCCCCCcccCcccc-----ccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCce
Q 013578 69 SHGDKDQNKRHHPLDV-----NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143 (440)
Q Consensus 69 ~~~~~~~~~~~~~~~~-----~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~ 143 (440)
+.+...+....|++.- .....|.+.|..+.|-|....++|++.|+.+++|-.+++... .+.++...+|..+..+
T Consensus 261 as~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~-pR~LR~R~GHs~Pp~~ 339 (910)
T KOG1539|consen 261 ASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGV-PRLLRSRGGHSAPPSC 339 (910)
T ss_pred EeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCc-chheeeccCCCCCchh
Confidence 4555666667776642 234479999999999999999999999999999988876654 3467788899999999
Q ss_pred EEEc-cCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEE
Q 013578 144 VAFA-DNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTII 222 (440)
Q Consensus 144 v~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 222 (440)
+.|. .++..++.++.|..-..+.+.................. .+.-...........+....+ ....-....+ .+
T Consensus 340 irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~-kk~~~~~~~~~k~p~i~~fa~--~~~RE~~W~N-v~ 415 (910)
T KOG1539|consen 340 IRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRA-KKVNVFSTEKLKLPPIVEFAF--ENAREKEWDN-VI 415 (910)
T ss_pred eeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccc-ccccccchhhhcCCcceeeec--ccchhhhhcc-ee
Confidence 9998 67888888887743222222211111000000000000 000000000000000000000 0000001111 56
Q ss_pred EEeeCCceEEEEeCCCCce-eeeee-----CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee-
Q 013578 223 ASCSEGTDISIWHGKTGKL-LGNVD-----TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL- 295 (440)
Q Consensus 223 ~s~~~d~~i~vwd~~~~~~-~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~- 295 (440)
+..-.+..++.|+.++... ...+. .....+++++.+++|++.+.|+..|.|.+|++..+- ....+
T Consensus 416 ~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi--------~r~sf~ 487 (910)
T KOG1539|consen 416 TAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGI--------HRKSFG 487 (910)
T ss_pred EEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCe--------eecccc
Confidence 6666777899999987654 22222 234678899999999999999999999999997764 33344
Q ss_pred --eccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe
Q 013578 296 --KGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT 373 (440)
Q Consensus 296 --~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 373 (440)
..|.++|++++...-++.+++++.+|.+++||..+...+.. -.-...+..+.++.....++.+
T Consensus 488 ~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~---------------l~l~~~~~~iv~hr~s~l~a~~ 552 (910)
T KOG1539|consen 488 DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKS---------------LRLGSSITGIVYHRVSDLLAIA 552 (910)
T ss_pred cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeee---------------eccCCCcceeeeeehhhhhhhh
Confidence 57999999999988888999999999999999986542211 0112235567777776666664
Q ss_pred -cCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 374 -HGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 374 -~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
++-.|+++|..+.+.++.+ .+|.+.|++++|+||| ++|++++.|++||+||++++.
T Consensus 553 ~ddf~I~vvD~~t~kvvR~f-~gh~nritd~~FS~Dg--------rWlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 553 LDDFSIRVVDVVTRKVVREF-WGHGNRITDMTFSPDG--------RWLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred cCceeEEEEEchhhhhhHHh-hccccceeeeEeCCCC--------cEEEEeecCCcEEEEeccCcc
Confidence 5789999999999999999 5999999999999999 999999999999999999875
No 123
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.9e-25 Score=168.81 Aligned_cols=230 Identities=21% Similarity=0.273 Sum_probs=175.6
Q ss_pred CCCCCCCCCcccCc-------cccccccccCcceeEEEEcc--CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCC
Q 013578 68 HSHGDKDQNKRHHP-------LDVNTLKGHGDSVTGLCFSS--DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG 138 (440)
Q Consensus 68 ~~~~~~~~~~~~~~-------~~~~~l~~H~~~V~~l~~s~--dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~ 138 (440)
.++.++|++++++. .++.+|.||.++|+.++|.. -|.+||++++||.|.||.-..+. +........|.
T Consensus 26 lATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~---w~k~~e~~~h~ 102 (299)
T KOG1332|consen 26 LATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGR---WTKAYEHAAHS 102 (299)
T ss_pred eeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCc---hhhhhhhhhhc
Confidence 46667777777663 35778999999999999976 79999999999999999987663 22334456788
Q ss_pred CCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCC
Q 013578 139 GPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADG 218 (440)
Q Consensus 139 ~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (440)
..|++++|.|.+--+
T Consensus 103 ~SVNsV~wapheygl----------------------------------------------------------------- 117 (299)
T KOG1332|consen 103 ASVNSVAWAPHEYGL----------------------------------------------------------------- 117 (299)
T ss_pred ccceeecccccccce-----------------------------------------------------------------
Confidence 999999999865321
Q ss_pred CeEEEEeeCCceEEEEeCCCC---ceeeeeeCCCCcccEEEecCC---C-----------CeEEEEecCCCEEEEEeEec
Q 013578 219 STIIASCSEGTDISIWHGKTG---KLLGNVDTNQLKNNMAAISPN---G-----------RFLAAAAFTADVKVWEIVYS 281 (440)
Q Consensus 219 ~~~l~s~~~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~s~~---~-----------~~l~~~~~dg~i~i~d~~~~ 281 (440)
.|++++.||.|.+.+.++. ...+....|...+++++|.|- | +.|++|+.|..|+||+....
T Consensus 118 --~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~ 195 (299)
T KOG1332|consen 118 --LLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD 195 (299)
T ss_pred --EEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc
Confidence 6888899999999887654 223445678889999999985 4 67999999999999998654
Q ss_pred CCCceeeeeeeeeeeccccceEEEEEcCCC----CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeee
Q 013578 282 KDGLVKAVTSVMQLKGHKSAVTWLCFAPNS----EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQ 357 (440)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (440)
. +.....+.+|.+.|+.++|.|.- .+|++++.||+|.||..+...... ... +. ......
T Consensus 196 ~------w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w-k~t--------ll--~~f~~~ 258 (299)
T KOG1332|consen 196 S------WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW-KKT--------LL--EEFPDV 258 (299)
T ss_pred c------hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc-ccc--------cc--ccCCcc
Confidence 2 23445589999999999999953 479999999999999877321110 000 11 112345
Q ss_pred eeeEEeCCCCCEEEEec-CCEEEEEEcC
Q 013578 358 YDRLSLSSDGKILAATH-GSTLQWLSVE 384 (440)
Q Consensus 358 v~~~~~s~~g~~l~~~~-~~~i~i~d~~ 384 (440)
+.+++||..|.+|+++. |+.+.+|.-.
T Consensus 259 ~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 259 VWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred eEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 78999999999999854 8999999643
No 124
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=1.1e-23 Score=175.02 Aligned_cols=308 Identities=16% Similarity=0.225 Sum_probs=207.8
Q ss_pred ccccccCcceeEEEEccCC--CEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCC-CeEEEEeecCC
Q 013578 85 NTLKGHGDSVTGLCFSSDG--KCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNA-TSIVVATHNLS 161 (440)
Q Consensus 85 ~~l~~H~~~V~~l~~s~dg--~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~~~~ 161 (440)
...+-|.++|++++|+|.. +++|+|+.-|.|-+||+.+.+.. ..-.....+|..+|.++.|+|.. ..+++.+.|+
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d-~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG- 257 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD-KDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG- 257 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc-cCceEEeccCCccccceEecCCChhheeeeccCc-
Confidence 4556789999999999954 58899999999999999743322 23455677899999999999965 4566677774
Q ss_pred cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578 162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL 241 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 241 (440)
.+...+.+......-... .... ...+.+-++.+.. .++.+..=|...+||++++..
T Consensus 258 --tiR~~D~~~~i~e~v~s~----------------~~d~-----~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s 313 (498)
T KOG4328|consen 258 --TIRLQDFEGNISEEVLSL----------------DTDN-----IWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGS 313 (498)
T ss_pred --eeeeeeecchhhHHHhhc----------------Cccc-----eeeeeccccCCCc-cEEEeecccceEEEEeecCCc
Confidence 344433333221100000 0000 0111112233444 566666666899999998754
Q ss_pred -eeeeeCCCCcccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC
Q 013578 242 -LGNVDTNQLKNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK 319 (440)
Q Consensus 242 -~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~ 319 (440)
...+..|...|..++++|. ..+|++++.|++.+|||++.-..... +......|...|.+..|||.+..|+|.+.
T Consensus 314 ~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s----p~lst~~HrrsV~sAyFSPs~gtl~TT~~ 389 (498)
T KOG4328|consen 314 EYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS----PFLSTLPHRRSVNSAYFSPSGGTLLTTCQ 389 (498)
T ss_pred cchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC----cceecccccceeeeeEEcCCCCceEeecc
Confidence 5666778889999999995 57889999999999999986553211 23344569999999999998888999999
Q ss_pred CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccC
Q 013578 320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEG 398 (440)
Q Consensus 320 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~ 398 (440)
|..|+|||.. ++....... ..++.....+.........|.|+..++++|. -..|-|||...++.+..+......
T Consensus 390 D~~IRv~dss---~~sa~~~p~--~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~ 464 (498)
T KOG4328|consen 390 DNEIRVFDSS---CISAKDEPL--GTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS 464 (498)
T ss_pred CCceEEeecc---cccccCCcc--ceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc
Confidence 9999999985 111111111 1111112222333455689999999999987 678999999999987776333333
Q ss_pred CeEEE-EecCCCCCCCCCcce-EEEEeeCCCeEEEEeCC
Q 013578 399 EITCM-AWAPKTIPMGNQQVS-VLATSSVDKKVKLWLAP 435 (440)
Q Consensus 399 ~v~~v-~~~~~~~~~~~~~~~-~l~t~~~Dg~i~vw~~~ 435 (440)
.|.++ .|+|-+ . +++-++..|.|.||.-.
T Consensus 465 tI~~vn~~HP~~--------~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 465 TIPSVNEFHPMR--------DTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ccccceeecccc--------cceeccCCccceEEEEecC
Confidence 56554 799986 4 44445557888888654
No 125
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=9.7e-24 Score=183.31 Aligned_cols=236 Identities=17% Similarity=0.286 Sum_probs=188.5
Q ss_pred eeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccc
Q 013578 94 VTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKA 173 (440)
Q Consensus 94 V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (440)
.+-+.|+ ..+.||.|.. ..|.+|+..++... .....+...|+++.|+++|.
T Consensus 180 ~nlldWs-s~n~laValg-~~vylW~~~s~~v~-----~l~~~~~~~vtSv~ws~~G~---------------------- 230 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVALG-QSVYLWSASSGSVT-----ELCSFGEELVTSVKWSPDGS---------------------- 230 (484)
T ss_pred hhHhhcc-cCCeEEEEec-ceEEEEecCCCceE-----EeEecCCCceEEEEECCCCC----------------------
Confidence 3456787 4456777653 46999998876522 22222268899999988876
Q ss_pred cccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeC-CCCcc
Q 013578 174 ISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDT-NQLKN 252 (440)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v 252 (440)
+|++|..+|.|.|||..+.+.+..+.. |...|
T Consensus 231 -----------------------------------------------~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rv 263 (484)
T KOG0305|consen 231 -----------------------------------------------HLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRV 263 (484)
T ss_pred -----------------------------------------------EEEEeecCCeEEEEehhhccccccccCCcCcee
Confidence 677788889999999999999999988 99999
Q ss_pred cEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccc
Q 013578 253 NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRY 332 (440)
Q Consensus 253 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~ 332 (440)
.+++|+ +..+.+|+.++.|..+|++..+. ....+.+|...|..+.|++|+.+||+|+.|+.+.|||.....
T Consensus 264 g~laW~--~~~lssGsr~~~I~~~dvR~~~~-------~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~ 334 (484)
T KOG0305|consen 264 GSLAWN--SSVLSSGSRDGKILNHDVRISQH-------VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE 334 (484)
T ss_pred EEEecc--CceEEEecCCCcEEEEEEecchh-------hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc
Confidence 999998 77899999999999999987762 222488999999999999999999999999999999994322
Q ss_pred cccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEec---CCEEEEEEcCCccchhhhhccccCCeEEEEecCC
Q 013578 333 HLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATH---GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPK 408 (440)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~---~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~ 408 (440)
+......|...|.+++|+|-.. +||+|. |+.|++||+.+|+.+..+. -...|..+.|++.
T Consensus 335 --------------p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd--tgsQVcsL~Wsk~ 398 (484)
T KOG0305|consen 335 --------------PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD--TGSQVCSLIWSKK 398 (484)
T ss_pred --------------ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc--cCCceeeEEEcCC
Confidence 2344557788899999999754 777754 8999999999999999875 6678999999998
Q ss_pred CCCCCCCcceEEEE--eeCCCeEEEEeCCCCC
Q 013578 409 TIPMGNQQVSVLAT--SSVDKKVKLWLAPSLE 438 (440)
Q Consensus 409 ~~~~~~~~~~~l~t--~~~Dg~i~vw~~~~~~ 438 (440)
. +-|++ |-.++.|.||++++.+
T Consensus 399 ~--------kEi~sthG~s~n~i~lw~~ps~~ 422 (484)
T KOG0305|consen 399 Y--------KELLSTHGYSENQITLWKYPSMK 422 (484)
T ss_pred C--------CEEEEecCCCCCcEEEEeccccc
Confidence 6 33443 3447899999998754
No 126
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.3e-24 Score=190.14 Aligned_cols=189 Identities=18% Similarity=0.293 Sum_probs=157.6
Q ss_pred EEEEeeCCceEEEEeCCC---CceeeeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee
Q 013578 221 IIASCSEGTDISIWHGKT---GKLLGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK 296 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~---~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 296 (440)
+|++++..|.|.+||+.. .+.+..+..|...+.++.|++ ..++|++|+.||.|++||++..+ ....+.
T Consensus 102 lIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~--------S~~t~~ 173 (839)
T KOG0269|consen 102 LIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK--------SKSTFR 173 (839)
T ss_pred hheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc--------cccccc
Confidence 899999999999999986 556677889999999999998 46889999999999999998876 566677
Q ss_pred ccccceEEEEEcC-CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-
Q 013578 297 GHKSAVTWLCFAP-NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH- 374 (440)
Q Consensus 297 ~h~~~v~~~~~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~- 374 (440)
+....|..+.|+| .+..|+++...|.+++||++.... .......|...|.++.|+|++.+||+|+
T Consensus 174 ~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r-------------~~~k~~AH~GpV~c~nwhPnr~~lATGGR 240 (839)
T KOG0269|consen 174 SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR-------------CEKKLTAHNGPVLCLNWHPNREWLATGGR 240 (839)
T ss_pred ccchhhhceeeccCCCceEEEecCCceEEEeeccCchh-------------HHHHhhcccCceEEEeecCCCceeeecCC
Confidence 7888999999999 567899999999999999995432 2334457788899999999999999987
Q ss_pred CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeC--CCeEEEEeCCCC
Q 013578 375 GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSV--DKKVKLWLAPSL 437 (440)
Q Consensus 375 ~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~--Dg~i~vw~~~~~ 437 (440)
|+.|+|||..+++.-.........+|.+|.|-|..+ ..|++++. |-.|+|||++..
T Consensus 241 DK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~-------~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 241 DKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARS-------YHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred CccEEEEeccCCCccceeEEeecceeeeeeeccCcc-------chhhhhhccccceEEEEeeccc
Confidence 999999999877654333223456899999999863 67888775 889999999763
No 127
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=9.6e-26 Score=197.24 Aligned_cols=186 Identities=24% Similarity=0.420 Sum_probs=167.2
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~ 300 (440)
.+++|+.|..+.+|.+.....+..+.+|..+|.++.|++...+|++|+.+|+|++||+...+ .++++.+|..
T Consensus 42 ~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk--------~vrtLtgh~~ 113 (825)
T KOG0267|consen 42 SLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK--------IVRTLTGHLL 113 (825)
T ss_pred eeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh--------hhhhhhcccc
Confidence 78889999989999988777777899999999999999999999999999999999997665 6788999999
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEE
Q 013578 301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQ 379 (440)
Q Consensus 301 ~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~ 379 (440)
.+.++.|+|-+.++++|+.|+.+++||++...|. +...+|...+..+.|+|+|++++.|. |..++
T Consensus 114 ~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~--------------~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvk 179 (825)
T KOG0267|consen 114 NITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCS--------------HTYKSHTRVVDVLRLSPDGRWVASGGEDNTVK 179 (825)
T ss_pred CcceeeeccceEEeccccccccceehhhhccCce--------------eeecCCcceeEEEeecCCCceeeccCCcceee
Confidence 9999999999999999999999999999955442 22334667788999999999999976 69999
Q ss_pred EEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 380 WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 380 i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
+||...|+....+ ..|++.+..+.|+|.. -++++||.|+++++||+++.
T Consensus 180 i~d~~agk~~~ef-~~~e~~v~sle~hp~e--------~Lla~Gs~d~tv~f~dletf 228 (825)
T KOG0267|consen 180 IWDLTAGKLSKEF-KSHEGKVQSLEFHPLE--------VLLAPGSSDRTVRFWDLETF 228 (825)
T ss_pred eeccccccccccc-ccccccccccccCchh--------hhhccCCCCceeeeecccee
Confidence 9999999999999 5899999999999997 78999999999999999854
No 128
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.3e-23 Score=174.98 Aligned_cols=234 Identities=15% Similarity=0.195 Sum_probs=182.2
Q ss_pred CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecc
Q 013578 91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGE 170 (440)
Q Consensus 91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~ 170 (440)
.++|.|++-+|+|.+|+.|...|.|.+|.+.++. ++.....|-..|+++.|+.|+.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~-----LL~v~~aHYQ~ITcL~fs~dgs------------------- 136 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGI-----LLNVLSAHYQSITCLKFSDDGS------------------- 136 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEecccc-----HHHHHHhhccceeEEEEeCCCc-------------------
Confidence 5789999999999999999899999999999986 4455577889999999998876
Q ss_pred ccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCC---------CCce
Q 013578 171 EKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK---------TGKL 241 (440)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~---------~~~~ 241 (440)
++++|+.||.|.+|++. +-++
T Consensus 137 --------------------------------------------------~iiTgskDg~V~vW~l~~lv~a~~~~~~~p 166 (476)
T KOG0646|consen 137 --------------------------------------------------HIITGSKDGAVLVWLLTDLVSADNDHSVKP 166 (476)
T ss_pred --------------------------------------------------EEEecCCCccEEEEEEEeecccccCCCccc
Confidence 56666666666666542 3467
Q ss_pred eeeeeCCCCcccEEEecCC--CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC
Q 013578 242 LGNVDTNQLKNNMAAISPN--GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK 319 (440)
Q Consensus 242 ~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~ 319 (440)
++.+..|.-+|+.+...+. ..+|++++.|.++++||+..+. .+..+. ....+.+++.+|-++.++.|+.
T Consensus 167 ~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~--------LLlti~-fp~si~av~lDpae~~~yiGt~ 237 (476)
T KOG0646|consen 167 LHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV--------LLLTIT-FPSSIKAVALDPAERVVYIGTE 237 (476)
T ss_pred eeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce--------eeEEEe-cCCcceeEEEcccccEEEecCC
Confidence 7888899999999888764 4689999999999999997765 444433 5678999999999999999999
Q ss_pred CCcEEEEecCccccccC--CCCccccccccccCCCCCee--eeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhc
Q 013578 320 DGTLRVWNINVRYHLDE--DPKTLKVLPIPLLDSNGATL--QYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEK 394 (440)
Q Consensus 320 dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~ 394 (440)
+|.|.+.++.+...... ..+.............+|.. .|+|++++-||.+|++|+ ||.++|||+.+.++++++.
T Consensus 238 ~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~- 316 (476)
T KOG0646|consen 238 EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ- 316 (476)
T ss_pred cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh-
Confidence 99999988875432111 00111111122233345554 899999999999999998 9999999999999999984
Q ss_pred cccCCeEEEEecCC
Q 013578 395 AHEGEITCMAWAPK 408 (440)
Q Consensus 395 ~h~~~v~~v~~~~~ 408 (440)
...++|+.+.+.|-
T Consensus 317 ~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 317 TSKGPVTNLQINPL 330 (476)
T ss_pred hhccccceeEeecc
Confidence 46788999998554
No 129
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=3.7e-24 Score=179.89 Aligned_cols=248 Identities=16% Similarity=0.238 Sum_probs=190.0
Q ss_pred cCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccc
Q 013578 134 NLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATY 213 (440)
Q Consensus 134 ~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (440)
...|+.-|.++.++...+++.+++.. .+.+|+...........+ .+... .......+.
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgGkg----cVKVWdis~pg~k~Pvsq----------Ldcl~--------rdnyiRSck 472 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGGKG----CVKVWDISQPGNKSPVSQ----------LDCLN--------RDNYIRSCK 472 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecCCC----eEEEeeccCCCCCCcccc----------ccccC--------cccceeeeE
Confidence 34677888999999999999998754 788888766522211111 11111 111122233
Q ss_pred cCCCCCeEEEEeeCCceEEEEeCCCCcee--eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeee
Q 013578 214 GTADGSTIIASCSEGTDISIWHGKTGKLL--GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTS 291 (440)
Q Consensus 214 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 291 (440)
..+||+ .|++|++-.++.|||+...... ..+.........++.+||.+..+++..||.|.|||++... .
T Consensus 473 L~pdgr-tLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~--------~ 543 (705)
T KOG0639|consen 473 LLPDGR-TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT--------L 543 (705)
T ss_pred ecCCCc-eEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce--------e
Confidence 478998 7888888999999999876543 2333333446678999999999999999999999997655 7
Q ss_pred eeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE
Q 013578 292 VMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA 371 (440)
Q Consensus 292 ~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 371 (440)
+..++||.+.+.||.++++|..|.||+-|.+||.||++++..+.+.. -...|.++.++|.+.+|+
T Consensus 544 VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd---------------F~SQIfSLg~cP~~dWla 608 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD---------------FSSQIFSLGYCPTGDWLA 608 (705)
T ss_pred eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh---------------hhhhheecccCCCcccee
Confidence 89999999999999999999999999999999999999887654322 123477899999999999
Q ss_pred Eec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 372 ATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 372 ~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
+|. ++.+.+......+.. .+ .-|+..|.++.|.+.| +++++.|.|..+..|+.+-|
T Consensus 609 vGMens~vevlh~skp~ky-ql-hlheScVLSlKFa~cG--------kwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 609 VGMENSNVEVLHTSKPEKY-QL-HLHESCVLSLKFAYCG--------KWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred eecccCcEEEEecCCccce-ee-cccccEEEEEEecccC--------ceeeecCchhhhhhccCccc
Confidence 997 677877776544433 33 4599999999999999 89999999999999998755
No 130
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=2.8e-22 Score=168.71 Aligned_cols=318 Identities=17% Similarity=0.220 Sum_probs=216.4
Q ss_pred cccccccCcceeEEEEccCCCEEEEeeCCC--------cEEEEecCCCCCcceeeEEecCCCCCCCceEEEccC-CCeEE
Q 013578 84 VNTLKGHGDSVTGLCFSSDGKCLATACADG--------VIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADN-ATSIV 154 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg--------~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~ 154 (440)
.+.+.||+..|.|++.+||.-.+++|-.-| .+|+||..+.. .+.........|.+++|++. +..++
T Consensus 97 Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~-----TL~V~g~f~~GV~~vaFsk~~~G~~l 171 (626)
T KOG2106|consen 97 QRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLS-----TLHVIGFFDRGVTCVAFSKINGGSLL 171 (626)
T ss_pred cccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccce-----eeeeeccccccceeeeecccCCCceE
Confidence 456789999999999999999999885555 49999966543 22333345578999999974 33444
Q ss_pred EEeecCCcceEEeeccccccccccccccCC------C------------CCCceeeccccccccee--EE---Eeecccc
Q 013578 155 VATHNLSGCSLYMYGEEKAISTNEGKQQSK------L------------PGPEIKWEHHKVHDKRA--IL---TLFGASA 211 (440)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~------------~~~~~~~~~~~~~~~~~--~~---~~~~~~~ 211 (440)
.+-.++....+.+|+-.+.....+.+...+ + .+....|......-.+. +. ......+
T Consensus 172 ~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~ 251 (626)
T KOG2106|consen 172 CAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLC 251 (626)
T ss_pred EEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEE
Confidence 444555556666666554433222221100 0 01112232211100000 00 0012334
Q ss_pred cccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCc------
Q 013578 212 TYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGL------ 285 (440)
Q Consensus 212 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~------ 285 (440)
+.|.++|+ +++|..+|.|.||+..+.+..+....|.+.|.+++.-.+|.+|- |+.|.+|..||-...+...
T Consensus 252 v~F~engd--viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~ 328 (626)
T KOG2106|consen 252 VTFLENGD--VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQ 328 (626)
T ss_pred EEEcCCCC--EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchh
Confidence 55677776 89999999999999988888777779999999999999998765 9999999999932221000
Q ss_pred ---ee-----------------------eeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCC
Q 013578 286 ---VK-----------------------AVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPK 339 (440)
Q Consensus 286 ---~~-----------------------~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 339 (440)
.+ +-.......+|....+.++.+|+..+++|++.|+.+++|+-. +..
T Consensus 329 ~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~--k~~----- 401 (626)
T KOG2106|consen 329 FGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDH--KLE----- 401 (626)
T ss_pred cCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCC--cee-----
Confidence 00 001123345788899999999999999999999999999922 110
Q ss_pred ccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcce
Q 013578 340 TLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVS 418 (440)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~ 418 (440)
-.+ .-..++.++.|+|.| .+|.|. .|...+.|.++...+..- . ...++++|+|+|+| .
T Consensus 402 wt~----------~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~-~-d~~~ls~v~ysp~G--------~ 460 (626)
T KOG2106|consen 402 WTK----------IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIH-T-DNEQLSVVRYSPDG--------A 460 (626)
T ss_pred EEE----------EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEE-e-cCCceEEEEEcCCC--------C
Confidence 001 112346689999999 777776 899999999995555443 2 37899999999999 8
Q ss_pred EEEEeeCCCeEEEEeCCCC
Q 013578 419 VLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 419 ~l~t~~~Dg~i~vw~~~~~ 437 (440)
+||.|+.|+.|.||.+...
T Consensus 461 ~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 461 FLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred EEEEecCCCeEEEEEECCC
Confidence 9999999999999998754
No 131
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.7e-22 Score=160.23 Aligned_cols=185 Identities=20% Similarity=0.253 Sum_probs=157.9
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCC--eEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGR--FLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH 298 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h 298 (440)
++++|+.|-+|+|||++....+..+-.|.+.|+++.|.++-. .|++|+.||.|.+|+. ..+.++..+++|
T Consensus 55 ~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~--------~~W~~~~slK~H 126 (362)
T KOG0294|consen 55 YVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV--------GSWELLKSLKAH 126 (362)
T ss_pred eEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEc--------CCeEEeeeeccc
Confidence 899999999999999999999999999999999999998765 8999999999999998 445589999999
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEE
Q 013578 299 KSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTL 378 (440)
Q Consensus 299 ~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i 378 (440)
.+.|+.++.+|.+++-++.+.|+.+++||+-.++.- ....+ .+. -+.+.|+|.|.+++.+..+.|
T Consensus 127 ~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a-------~v~~L------~~~--at~v~w~~~Gd~F~v~~~~~i 191 (362)
T KOG0294|consen 127 KGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVA-------FVLNL------KNK--ATLVSWSPQGDHFVVSGRNKI 191 (362)
T ss_pred ccccceeEecCCCceEEEEcCCceeeeehhhcCccc-------eeecc------CCc--ceeeEEcCCCCEEEEEeccEE
Confidence 999999999999999999999999999999765421 11110 111 123999999999999999999
Q ss_pred EEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 379 QWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 379 ~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
-+|.+.+......+. ....+.++.|... ..|++|++|+.|++||.+...+
T Consensus 192 ~i~q~d~A~v~~~i~--~~~r~l~~~~l~~---------~~L~vG~d~~~i~~~D~ds~~~ 241 (362)
T KOG0294|consen 192 DIYQLDNASVFREIE--NPKRILCATFLDG---------SELLVGGDNEWISLKDTDSDTP 241 (362)
T ss_pred EEEecccHhHhhhhh--ccccceeeeecCC---------ceEEEecCCceEEEeccCCCcc
Confidence 999999999888875 3467888989877 4899999999999999986543
No 132
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=6.1e-24 Score=168.59 Aligned_cols=195 Identities=18% Similarity=0.302 Sum_probs=165.1
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEe------Eec-------------
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI------VYS------------- 281 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~------~~~------------- 281 (440)
++.+++.|.+.++|.++++.++.++.+|.+.|+++.|++.+.++++++.|++-+||.. ...
T Consensus 162 i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e 241 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEE 241 (481)
T ss_pred ceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhh
Confidence 7888999999999999999999999999999999999999999999999999999972 110
Q ss_pred --------------CCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCcccccccc
Q 013578 282 --------------KDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIP 347 (440)
Q Consensus 282 --------------~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 347 (440)
.++. .-..++..+.+|.+.|.+..|-..|+.+++++.|.+..+||++++..+
T Consensus 242 ~sDe~~~d~d~~~~sD~~-tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v------------- 307 (481)
T KOG0300|consen 242 HSDEHNRDTDSSEKSDGH-TIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVV------------- 307 (481)
T ss_pred cccccccccccccccCCc-eeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCcee-------------
Confidence 0000 112357788999999999999999999999999999999999987543
Q ss_pred ccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCC
Q 013578 348 LLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD 426 (440)
Q Consensus 348 ~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D 426 (440)
....+|....+.++-+|..+++++++ |.+.++||++..-.-....++|.+.|+++.|..+ ..+++|++|
T Consensus 308 -~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d---------d~vVSgSDD 377 (481)
T KOG0300|consen 308 -NILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD---------DRVVSGSDD 377 (481)
T ss_pred -ccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC---------CceeecCCC
Confidence 33457777788899999999999877 8999999998554433334799999999999998 489999999
Q ss_pred CeEEEEeCCCCCC
Q 013578 427 KKVKLWLAPSLES 439 (440)
Q Consensus 427 g~i~vw~~~~~~~ 439 (440)
.+|+|||+.+..+
T Consensus 378 rTvKvWdLrNMRs 390 (481)
T KOG0300|consen 378 RTVKVWDLRNMRS 390 (481)
T ss_pred ceEEEeeeccccC
Confidence 9999999998754
No 133
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.92 E-value=2.6e-22 Score=160.03 Aligned_cols=273 Identities=15% Similarity=0.244 Sum_probs=188.0
Q ss_pred cCccccccccccCcceeEEEEcc-----CCCEEEEeeCCCcEEEEecCCCCCcceeeEEec--CCCCCCCceEEEccCCC
Q 013578 79 HHPLDVNTLKGHGDSVTGLCFSS-----DGKCLATACADGVIRVHKLDDASSKSFKFLRIN--LPPGGPPTAVAFADNAT 151 (440)
Q Consensus 79 ~~~~~~~~l~~H~~~V~~l~~s~-----dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~--~~~~~~v~~v~~~~~~~ 151 (440)
.....-+..+.|..+|..++|++ +-..+||.|.+ .+.+|+....... ..++.. ..+......++|+-+
T Consensus 26 ~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~i--r~lq~y~D~d~~Esfytcsw~yd-- 100 (385)
T KOG1034|consen 26 SYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGI--RLLQSYADEDHDESFYTCSWSYD-- 100 (385)
T ss_pred ceEeeeehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccce--eeeeeccCCCCCcceEEEEEEec--
Confidence 33344566778999999999985 23467776655 6888887654311 112111 112233333333322
Q ss_pred eEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceE
Q 013578 152 SIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDI 231 (440)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i 231 (440)
..++..+++.++.-|.|
T Consensus 101 ---------------------------------------------------------------~~~~~p~la~~G~~GvI 117 (385)
T KOG1034|consen 101 ---------------------------------------------------------------SNTGNPFLAAGGYLGVI 117 (385)
T ss_pred ---------------------------------------------------------------CCCCCeeEEeecceeEE
Confidence 22344488999999999
Q ss_pred EEEeCCCCceeeeeeCCCCcccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCceeeeeeeee---eeccccceEEEEE
Q 013578 232 SIWHGKTGKLLGNVDTNQLKNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ---LKGHKSAVTWLCF 307 (440)
Q Consensus 232 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~~h~~~v~~~~~ 307 (440)
+|.|+.++++...+.+|...|+.+.+.|+ .+++++++.|..|++|++++.. ++.. +.+|.+.|.++.|
T Consensus 118 rVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~--------Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 118 RVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV--------CVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred EEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe--------EEEEecccccccCcEEEEEE
Confidence 99999999999999999999999999996 4799999999999999997765 5554 4579999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCccccccC---------------CCC---ccccc-------------------------
Q 013578 308 APNSEQIITASKDGTLRVWNINVRYHLDE---------------DPK---TLKVL------------------------- 344 (440)
Q Consensus 308 ~p~~~~l~s~~~dg~i~iwd~~~~~~~~~---------------~~~---~~~~~------------------------- 344 (440)
+++|.+|++++.|.++++|++...+-... .+. ....+
T Consensus 190 ~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSksc 269 (385)
T KOG1034|consen 190 SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSC 269 (385)
T ss_pred cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeeccc
Confidence 99999999999999999999983221100 000 00000
Q ss_pred --------c----ccc---------------cCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccc
Q 013578 345 --------P----IPL---------------LDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAH 396 (440)
Q Consensus 345 --------~----~~~---------------~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h 396 (440)
+ ... ..........-..+|.|-+++||.|. .|.+++||++..+......-.|
T Consensus 270 enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~ 349 (385)
T KOG1034|consen 270 ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTH 349 (385)
T ss_pred CceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEe
Confidence 0 000 00000011122345666788888876 7999999998877642221112
Q ss_pred ---cCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 397 ---EGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 397 ---~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
...|...+|+.|+ .+|+...+|++|.-||.-
T Consensus 350 s~~~~tVRQ~sfS~dg--------s~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 350 SKSGSTVRQTSFSRDG--------SILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ccccceeeeeeecccC--------cEEEEEeCCCcEEEEEee
Confidence 3479999999999 899999999999999864
No 134
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=4e-23 Score=162.25 Aligned_cols=235 Identities=20% Similarity=0.304 Sum_probs=166.0
Q ss_pred CCCCCCCceEEEcc-CCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccc
Q 013578 135 LPPGGPPTAVAFAD-NATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATY 213 (440)
Q Consensus 135 ~~~~~~v~~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (440)
.+|++.|.++...+ .|+++++++.| ..+.+|+.++.............. ..+.-.....|.. +.....
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgad---gsi~v~Dl~n~t~~e~s~li~k~~-c~v~~~h~~~Hky-------~iss~~ 108 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGAD---GSIAVFDLQNATDYEASGLIAKHK-CIVAKQHENGHKY-------AISSAI 108 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCC---ccEEEEEeccccchhhccceehee-eeccccCCcccee-------eeeeeE
Confidence 35778899999887 47788888777 466666665543211111110000 0001111222222 222222
Q ss_pred cCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCC---CCeEEEEecCCCEEEEEeEecCCCceeeee
Q 013578 214 GTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPN---GRFLAAAAFTADVKVWEIVYSKDGLVKAVT 290 (440)
Q Consensus 214 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 290 (440)
+.|-+..++.+++-|.++++||..+-+....+.. ++.|..-+++|- .-++|+|..+-+|++.|+..+.
T Consensus 109 WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs-------- 179 (397)
T KOG4283|consen 109 WYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS-------- 179 (397)
T ss_pred EeeecCceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc--------
Confidence 3444444999999999999999999888777765 456777788873 4578899999999999998876
Q ss_pred eeeeeeccccceEEEEEcCCCCE-EEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCE
Q 013578 291 SVMQLKGHKSAVTWLCFAPNSEQ-IITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKI 369 (440)
Q Consensus 291 ~~~~~~~h~~~v~~~~~~p~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 369 (440)
..+.+.||.+.|.++.|+|...+ |++|+.||.|++||++..
T Consensus 180 ~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRra-------------------------------------- 221 (397)
T KOG4283|consen 180 FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRA-------------------------------------- 221 (397)
T ss_pred ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecc--------------------------------------
Confidence 88999999999999999998876 689999999999999832
Q ss_pred EEEecCCEEEEEEcCCccchhhh--hccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCCC
Q 013578 370 LAATHGSTLQWLSVETGKVLDTA--EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLESS 440 (440)
Q Consensus 370 l~~~~~~~i~i~d~~~~~~~~~~--~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~~ 440 (440)
.|.+++.|...++....+ ..+|.+.|+.++|..++ .++++++.|..+++|+..+|+.+
T Consensus 222 -----sgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~--------~~l~~~gtd~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 222 -----SGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA--------RYLASCGTDDRIRVWNMESGRNT 281 (397)
T ss_pred -----cceeEEeecccCccCccccccccccceeeeeeecccc--------hhhhhccCccceEEeecccCccc
Confidence 122334444443322222 25799999999999999 89999999999999999998764
No 135
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.5e-22 Score=159.59 Aligned_cols=251 Identities=16% Similarity=0.215 Sum_probs=184.3
Q ss_pred CCCCCCCCCCcccCcccc------ccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCC
Q 013578 67 SHSHGDKDQNKRHHPLDV------NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGP 140 (440)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~------~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~ 140 (440)
..+.++-|+++|.|...- +....|.++|.+++|+.||..+++|+.|+.+++||+.+++. .....|.++
T Consensus 42 ~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~------~~v~~Hd~p 115 (347)
T KOG0647|consen 42 LLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV------SQVAAHDAP 115 (347)
T ss_pred eEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe------eeeeecccc
Confidence 344778899999887643 45567999999999999999999999999999999998853 334568899
Q ss_pred CceEEEccCCC--eEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCC
Q 013578 141 PTAVAFADNAT--SIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADG 218 (440)
Q Consensus 141 v~~v~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (440)
|..+.|.+... .|++++.| ..+..|+.......... ..++..+... --
T Consensus 116 vkt~~wv~~~~~~cl~TGSWD---KTlKfWD~R~~~pv~t~------~LPeRvYa~D---------------------v~ 165 (347)
T KOG0647|consen 116 VKTCHWVPGMNYQCLVTGSWD---KTLKFWDTRSSNPVATL------QLPERVYAAD---------------------VL 165 (347)
T ss_pred eeEEEEecCCCcceeEecccc---cceeecccCCCCeeeee------eccceeeehh---------------------cc
Confidence 99999998766 78888888 67888887654322211 1122222111 11
Q ss_pred CeEEEEeeCCceEEEEeCCCCceeee-e-eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee
Q 013578 219 STIIASCSEGTDISIWHGKTGKLLGN-V-DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK 296 (440)
Q Consensus 219 ~~~l~s~~~d~~i~vwd~~~~~~~~~-~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 296 (440)
..+++.+..++.|.+|+++++..... . ..-.-.++|++..++....+.|+-+|.+-|..++.+... .-..++
T Consensus 166 ~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~------~nFtFk 239 (347)
T KOG0647|consen 166 YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK------DNFTFK 239 (347)
T ss_pred CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCcc------CceeEE
Confidence 12778888889999999986643211 1 122345789999999888899999999999998765321 233444
Q ss_pred ccc---------cceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC
Q 013578 297 GHK---------SAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG 367 (440)
Q Consensus 297 ~h~---------~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 367 (440)
.|. -.|++|+|+|.-..|+|.+.||++.+||-..+..+. ....+..+|++.+|+.+|
T Consensus 240 CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk--------------~s~~~~qpItcc~fn~~G 305 (347)
T KOG0647|consen 240 CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLK--------------TSETHPQPITCCSFNRNG 305 (347)
T ss_pred EeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhh--------------ccCcCCCccceeEecCCC
Confidence 454 257899999998899999999999999988655432 223445668999999999
Q ss_pred CEEEEe
Q 013578 368 KILAAT 373 (440)
Q Consensus 368 ~~l~~~ 373 (440)
.++|-+
T Consensus 306 ~ifaYA 311 (347)
T KOG0647|consen 306 SIFAYA 311 (347)
T ss_pred CEEEEE
Confidence 988864
No 136
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.91 E-value=8.6e-24 Score=178.18 Aligned_cols=207 Identities=20% Similarity=0.295 Sum_probs=153.9
Q ss_pred CCCCCeEEEEeeCCceEEEEeCCCCc----eeeee-eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCce---
Q 013578 215 TADGSTIIASCSEGTDISIWHGKTGK----LLGNV-DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLV--- 286 (440)
Q Consensus 215 ~~~~~~~l~s~~~d~~i~vwd~~~~~----~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~--- 286 (440)
.|.|. .|++|+.|.+|++||+.-.. ..+.+ ......|.+++|++.|..|++.+.....+|+|-....-...
T Consensus 176 Dp~Ga-R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KG 254 (641)
T KOG0772|consen 176 DPSGA-RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKG 254 (641)
T ss_pred cCCCc-eeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeecc
Confidence 34555 89999999999999986432 11222 23455789999999999999999999999999532210000
Q ss_pred -eeeeeeeeeeccccceEEEEEcCCC-CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeC
Q 013578 287 -KAVTSVMQLKGHKSAVTWLCFAPNS-EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLS 364 (440)
Q Consensus 287 -~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 364 (440)
........-+||...++|-+|+|+. ..|+|++.||++||||++..+... ..+. .....+....++.++|+
T Consensus 255 DQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~------qVik--~k~~~g~Rv~~tsC~~n 326 (641)
T KOG0772|consen 255 DQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL------QVIK--TKPAGGKRVPVTSCAWN 326 (641)
T ss_pred chhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe------eEEe--eccCCCcccCceeeecC
Confidence 1112344567899999999999965 468999999999999998654221 1111 12223556678899999
Q ss_pred CCCCEEEEec-CCEEEEEEcCCcc--chhhhhccccC--CeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 365 SDGKILAATH-GSTLQWLSVETGK--VLDTAEKAHEG--EITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 365 ~~g~~l~~~~-~~~i~i~d~~~~~--~~~~~~~~h~~--~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
+||+++|+|. ||.|.+|+..+.. ....+..+|.. .|+||.|+++| ++|++-|.|+++++||+++.+
T Consensus 327 rdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg--------~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 327 RDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG--------NYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred CCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc--------chhhhccCCCceeeeeccccc
Confidence 9999999865 9999999975443 33344467887 89999999999 999999999999999998764
No 137
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=5.7e-22 Score=166.86 Aligned_cols=317 Identities=16% Similarity=0.212 Sum_probs=213.9
Q ss_pred CCCCCCCCcccCccc----cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcce----------------
Q 013578 69 SHGDKDQNKRHHPLD----VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSF---------------- 128 (440)
Q Consensus 69 ~~~~~~~~~~~~~~~----~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~---------------- 128 (440)
.++++++..-+|... .+...+|.+.|.+++.--+|.+| +|+.|..|..||-+-......
T Consensus 261 iTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~ 339 (626)
T KOG2106|consen 261 ITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGK 339 (626)
T ss_pred EeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCC
Confidence 466777887777653 23344899999999999999654 599999999999321110000
Q ss_pred -------------------eeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCc
Q 013578 129 -------------------KFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPE 189 (440)
Q Consensus 129 -------------------~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (440)
.+.....+|......++.+|+...+++++.+ ..+.+|+..+.
T Consensus 340 ~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqd---k~v~lW~~~k~---------------- 400 (626)
T KOG2106|consen 340 GDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQD---KHVRLWNDHKL---------------- 400 (626)
T ss_pred CcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCc---ceEEEccCCce----------------
Confidence 0011123445556666666666666666665 45555552222
Q ss_pred eeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec
Q 013578 190 IKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF 269 (440)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 269 (440)
.|.. .......+.-+.|.| .++.|...|...+.|.++...+..-.. ..++++++|+|+|.+||+|+.
T Consensus 401 -~wt~---------~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~ 467 (626)
T KOG2106|consen 401 -EWTK---------IIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSH 467 (626)
T ss_pred -eEEE---------EecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecC
Confidence 1211 111223344456666 799999999999999998655544444 889999999999999999999
Q ss_pred CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCcccccc----
Q 013578 270 TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLP---- 345 (440)
Q Consensus 270 dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---- 345 (440)
|+.|+||.+.... ..+..+....+ .+|+.+.|++|+++|.+-+.|-.|..|........ ...+..+-..
T Consensus 468 d~~iyiy~Vs~~g----~~y~r~~k~~g--s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~-ts~kDvkW~t~~c~ 540 (626)
T KOG2106|consen 468 DNHIYIYRVSANG----RKYSRVGKCSG--SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQI-TSVKDVKWATYTCT 540 (626)
T ss_pred CCeEEEEEECCCC----cEEEEeeeecC--ceeEEeeecCCCceEEeccCceEEEEEccccCccc-ceecceeeeeeEEE
Confidence 9999999997655 22333333333 89999999999999999999999999943322211 1111110000
Q ss_pred cc-ccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCcc---chhhhhccccCCeEEEEecCCCCCCCCCcceEE
Q 013578 346 IP-LLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGK---VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVL 420 (440)
Q Consensus 346 ~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~---~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l 420 (440)
+- ......+...+..++-+.+.+++|+|+ .|.|++|...--+ ....+ .+|.+.|++++|.-+. ..|
T Consensus 541 lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~-~ghs~~vt~V~Fl~~d--------~~l 611 (626)
T KOG2106|consen 541 LGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEY-GGHSSHVTNVAFLCKD--------SHL 611 (626)
T ss_pred EEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceee-ccccceeEEEEEeeCC--------ceE
Confidence 00 001133444567788888899999998 5899999754322 23344 6899999999999876 788
Q ss_pred EEeeCCCeEEEEeC
Q 013578 421 ATSSVDKKVKLWLA 434 (440)
Q Consensus 421 ~t~~~Dg~i~vw~~ 434 (440)
++.+.|..|..|++
T Consensus 612 i~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 612 ISTGKDTSIMQWRL 625 (626)
T ss_pred EecCCCceEEEEEe
Confidence 88889999999987
No 138
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=3.9e-22 Score=161.90 Aligned_cols=267 Identities=16% Similarity=0.229 Sum_probs=175.3
Q ss_pred ccccccccccCcceeEEEEccCC--CEEEEeeCCCcEEEEecCCCC-----------CcceeeEEecCCCCCCCceEEEc
Q 013578 81 PLDVNTLKGHGDSVTGLCFSSDG--KCLATACADGVIRVHKLDDAS-----------SKSFKFLRINLPPGGPPTAVAFA 147 (440)
Q Consensus 81 ~~~~~~l~~H~~~V~~l~~s~dg--~~l~t~s~dg~v~vW~~~~~~-----------~~~~~~~~~~~~~~~~v~~v~~~ 147 (440)
|..-....+|.+.|+.+..++-| .+.|+=+..|.|.||++.... ......+....+|...=+.++|+
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWS 220 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWS 220 (440)
T ss_pred ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecc
Confidence 33334455799999999988855 466666889999999985421 01223344556777888999999
Q ss_pred cCCCe-EEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEee
Q 013578 148 DNATS-IVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCS 226 (440)
Q Consensus 148 ~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 226 (440)
|-..- |+++.. ...+++|.............. .+|. .......++|..+..|++|+
T Consensus 221 p~~~g~LlsGDc---~~~I~lw~~~~g~W~vd~~Pf-------------~gH~-------~SVEDLqWSptE~~vfaScS 277 (440)
T KOG0302|consen 221 PIKTGRLLSGDC---VKGIHLWEPSTGSWKVDQRPF-------------TGHT-------KSVEDLQWSPTEDGVFASCS 277 (440)
T ss_pred cccccccccCcc---ccceEeeeeccCceeecCccc-------------cccc-------cchhhhccCCccCceEEeee
Confidence 94333 333322 234556554443211111110 0111 11222344777777999999
Q ss_pred CCceEEEEeCCCC---ceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceE
Q 013578 227 EGTDISIWHGKTG---KLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVT 303 (440)
Q Consensus 227 ~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~ 303 (440)
.|++|+|||++.+ .++.. +.|...|+.+.|+.+..+||+|+.||+++|||++.-+.+ .++..++-|..+|+
T Consensus 278 ~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~-----~pVA~fk~Hk~pIt 351 (440)
T KOG0302|consen 278 CDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG-----QPVATFKYHKAPIT 351 (440)
T ss_pred cCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC-----CcceeEEeccCCee
Confidence 9999999999987 33333 788999999999999889999999999999999877644 36888999999999
Q ss_pred EEEEcCCC-CEEEEEeCCCcEEEEecCcccccc----CCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEE-ecCC
Q 013578 304 WLCFAPNS-EQIITASKDGTLRVWNINVRYHLD----EDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAA-THGS 376 (440)
Q Consensus 304 ~~~~~p~~-~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~-~~~~ 376 (440)
+|.|+|.. ..|++++.|.+|.+||+....... +.......++..+....-....+..+.|++.-. ++++ +.+|
T Consensus 352 sieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 352 SIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred EEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 99999954 568888899999999997543211 111111222222222222344577889998755 4444 3344
No 139
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.91 E-value=3.2e-22 Score=159.19 Aligned_cols=284 Identities=17% Similarity=0.198 Sum_probs=187.9
Q ss_pred ceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCc--------ceeeEEecCCCCCCCceEEEc-------cCCCeEEEEe
Q 013578 93 SVTGLCFSSDGKCLATACADGVIRVHKLDDASSK--------SFKFLRINLPPGGPPTAVAFA-------DNATSIVVAT 157 (440)
Q Consensus 93 ~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~--------~~~~~~~~~~~~~~v~~v~~~-------~~~~~l~~~~ 157 (440)
-...+.|+|||..|++-+.|..+++|++...... ...........+..|...+|- |+..++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 3456899999999999999999999998643211 011112223334556666665 4555555555
Q ss_pred ecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeC-
Q 013578 158 HNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHG- 236 (440)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~- 236 (440)
.+ .-|.+|+.-......+. +.........+..+..|+|||. .|++| ....|+++|+
T Consensus 131 r~---~PIh~wdaftG~lraSy------------------~~ydh~de~taAhsL~Fs~DGe-qlfaG-ykrcirvFdt~ 187 (406)
T KOG2919|consen 131 RD---QPIHLWDAFTGKLRASY------------------RAYDHQDEYTAAHSLQFSPDGE-QLFAG-YKRCIRVFDTS 187 (406)
T ss_pred cc---Cceeeeeccccccccch------------------hhhhhHHhhhhheeEEecCCCC-eEeec-ccceEEEeecc
Confidence 54 34444444333111110 0111112223445567799999 55554 5567999998
Q ss_pred CCCceeeee-------eCCCCcccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEc
Q 013578 237 KTGKLLGNV-------DTNQLKNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFA 308 (440)
Q Consensus 237 ~~~~~~~~~-------~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 308 (440)
+.|..-..+ .+..+-+.|++|+|. .+.+++|+....+-||.-.... ++..+.+|.+.|+.+.|.
T Consensus 188 RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~--------pl~llggh~gGvThL~~~ 259 (406)
T KOG2919|consen 188 RPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR--------PLQLLGGHGGGVTHLQWC 259 (406)
T ss_pred CCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC--------ceeeecccCCCeeeEEec
Confidence 455321111 123456788999995 5599999998888888765444 677888999999999999
Q ss_pred CCCCEEEEEeC-CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCC-
Q 013578 309 PNSEQIITASK-DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVET- 385 (440)
Q Consensus 309 p~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~- 385 (440)
++|+.|++|++ |..|..||++.....- . . +....+....---....|++++|++|+ +|.|++||+++
T Consensus 260 edGn~lfsGaRk~dkIl~WDiR~~~~pv------~--~--L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~ 329 (406)
T KOG2919|consen 260 EDGNKLFSGARKDDKILCWDIRYSRDPV------Y--A--LERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL 329 (406)
T ss_pred cCcCeecccccCCCeEEEEeehhccchh------h--h--hhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCC
Confidence 99999999985 7789999998543210 0 0 001111111111356678999999995 99999999998
Q ss_pred ccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCC
Q 013578 386 GKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD 426 (440)
Q Consensus 386 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D 426 (440)
|..+..+ ..|...|+.++++|-- .+++|++..
T Consensus 330 gn~~sv~-~~~sd~vNgvslnP~m--------pilatssGq 361 (406)
T KOG2919|consen 330 GNEVSVT-GNYSDTVNGVSLNPIM--------PILATSSGQ 361 (406)
T ss_pred CCccccc-ccccccccceecCccc--------ceeeeccCc
Confidence 6666666 5899999999999987 688887753
No 140
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.90 E-value=4.9e-22 Score=162.83 Aligned_cols=262 Identities=19% Similarity=0.236 Sum_probs=186.9
Q ss_pred CcceeEEEEccCCC-EEEEeeCCCcEEEEecCCCCCc----ceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceE
Q 013578 91 GDSVTGLCFSSDGK-CLATACADGVIRVHKLDDASSK----SFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSL 165 (440)
Q Consensus 91 ~~~V~~l~~s~dg~-~l~t~s~dg~v~vW~~~~~~~~----~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~ 165 (440)
..+|..+.|.++.. .|+||+.|..|++|.+...... ..........|...|+.+.|+|+|..+++++.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D------- 85 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGD------- 85 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCC-------
Confidence 46899999998766 9999999999999998765433 34455566778899999999998876555544
Q ss_pred EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCC--------
Q 013578 166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK-------- 237 (440)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~-------- 237 (440)
+|.|.+|...
T Consensus 86 --------------------------------------------------------------~g~v~lWk~~~~~~~~~d 103 (434)
T KOG1009|consen 86 --------------------------------------------------------------GGEVFLWKQGDVRIFDAD 103 (434)
T ss_pred --------------------------------------------------------------CceEEEEEecCcCCcccc
Confidence 4444444322
Q ss_pred C--------CceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC
Q 013578 238 T--------GKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP 309 (440)
Q Consensus 238 ~--------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p 309 (440)
+ ....+.+.+|...+..++|+|+++++++++.|..+++||+..+. ....+..|...|..++|.|
T Consensus 104 ~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~--------l~~~~~dh~~yvqgvawDp 175 (434)
T KOG1009|consen 104 TEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ--------LLAILDDHEHYVQGVAWDP 175 (434)
T ss_pred chhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce--------eEeeccccccccceeecch
Confidence 1 22345566788899999999999999999999999999998876 7788889999999999999
Q ss_pred CCCEEEEEeCCCcEEEEecCccccccCCC--------------Ccc----------------------------------
Q 013578 310 NSEQIITASKDGTLRVWNINVRYHLDEDP--------------KTL---------------------------------- 341 (440)
Q Consensus 310 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------------~~~---------------------------------- 341 (440)
-++++++-+.|...+.+.+.......... ...
T Consensus 176 l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g 255 (434)
T KOG1009|consen 176 LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVG 255 (434)
T ss_pred hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeC
Confidence 99999998888866666554222111000 000
Q ss_pred -------------ccccccccCCCCCeeeeeeEEeCC------------------CCCEEEEecCCEEEEEEcCCccchh
Q 013578 342 -------------KVLPIPLLDSNGATLQYDRLSLSS------------------DGKILAATHGSTLQWLSVETGKVLD 390 (440)
Q Consensus 342 -------------~~~~~~~~~~~~~~~~v~~~~~s~------------------~g~~l~~~~~~~i~i~d~~~~~~~~ 390 (440)
+.+..|.....+.......+.|+| -+..+|.+..+.|++||.++.+++.
T Consensus 256 ~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~ 335 (434)
T KOG1009|consen 256 GGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLA 335 (434)
T ss_pred CceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceE
Confidence 000001111111112222333332 2234556677889999999988888
Q ss_pred hhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 391 TAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 391 ~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
....-|-..|++++|+++| ..|+..|.||.+.+-.++..
T Consensus 336 ~v~nihy~~iTDiaws~dg--------~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 336 VVDNIHYSAITDIAWSDDG--------SVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred EEeeeeeeeecceeecCCC--------cEEEEeccCCceEEEEEcch
Confidence 7777799999999999999 89999999999887666543
No 141
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=2.1e-21 Score=153.62 Aligned_cols=244 Identities=14% Similarity=0.187 Sum_probs=174.0
Q ss_pred ecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeeccccc
Q 013578 133 INLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASAT 212 (440)
Q Consensus 133 ~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (440)
...+....|.++.|+|.+..|++++.| ..+.+|+..........+ +........
T Consensus 8 l~npP~d~IS~v~f~~~~~~LLvssWD---gslrlYdv~~~~l~~~~~-----------------~~~plL~c~------ 61 (323)
T KOG1036|consen 8 LENPPEDGISSVKFSPSSSDLLVSSWD---GSLRLYDVPANSLKLKFK-----------------HGAPLLDCA------ 61 (323)
T ss_pred cCCCChhceeeEEEcCcCCcEEEEecc---CcEEEEeccchhhhhhee-----------------cCCceeeee------
Confidence 344556889999999999999999988 456666654431111111 111111111
Q ss_pred ccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeee
Q 013578 213 YGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSV 292 (440)
Q Consensus 213 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 292 (440)
+.+.. .+++|+-||.|+.+|+.++.. ..+..|...+.|+.+++....+++|+.|++|++||.+... ..
T Consensus 62 --F~d~~-~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~--------~~ 129 (323)
T KOG1036|consen 62 --FADES-TIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV--------VV 129 (323)
T ss_pred --ccCCc-eEEEeccCceEEEEEecCCcc-eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc--------cc
Confidence 23333 799999999999999998765 4456788999999999999999999999999999987532 22
Q ss_pred eeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE
Q 013578 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA 372 (440)
Q Consensus 293 ~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 372 (440)
..+. ....|.++.. .|..|+.|+.|..|.+||+++.....+ .....-...+.++++-|++.-.++
T Consensus 130 ~~~d-~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q------------~reS~lkyqtR~v~~~pn~eGy~~ 194 (323)
T KOG1036|consen 130 GTFD-QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQ------------RRESSLKYQTRCVALVPNGEGYVV 194 (323)
T ss_pred cccc-cCceEEEEec--cCCEEEEeecCceEEEEEcccccchhh------------hccccceeEEEEEEEecCCCceEE
Confidence 2332 2347888877 577899999999999999997644321 111233566889999998875555
Q ss_pred ec-CCEEEEEEcCCccc----hhhhhcccc---------CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 373 TH-GSTLQWLSVETGKV----LDTAEKAHE---------GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 373 ~~-~~~i~i~d~~~~~~----~~~~~~~h~---------~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
++ +|.|.+=.++..+. ...+ +.|. -+|++|+|+|-. ..|+|||.||.|.+||+.+.+
T Consensus 195 sSieGRVavE~~d~s~~~~skkyaF-kCHr~~~~~~~~~yPVNai~Fhp~~--------~tfaTgGsDG~V~~Wd~~~rK 265 (323)
T KOG1036|consen 195 SSIEGRVAVEYFDDSEEAQSKKYAF-KCHRLSEKDTEIIYPVNAIAFHPIH--------GTFATGGSDGIVNIWDLFNRK 265 (323)
T ss_pred EeecceEEEEccCCchHHhhhceeE-EeeecccCCceEEEEeceeEecccc--------ceEEecCCCceEEEccCcchh
Confidence 55 99988766655422 2223 3443 279999999986 789999999999999997654
No 142
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=6e-22 Score=164.16 Aligned_cols=191 Identities=17% Similarity=0.259 Sum_probs=148.3
Q ss_pred CCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee
Q 013578 218 GSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK 296 (440)
Q Consensus 218 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 296 (440)
-+.+|++|+.|.+|++||+.++++...+..|...|.++.|+| ...+|++|+.|+++.+.|+|.... .-..+
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~-------s~~~w- 326 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN-------SGKEW- 326 (463)
T ss_pred cceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc-------cCceE-
Confidence 344899999999999999999999999999999999999999 468999999999999999985321 11112
Q ss_pred ccccceEEEEEcCCCC-EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCE-EEEe-
Q 013578 297 GHKSAVTWLCFAPNSE-QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKI-LAAT- 373 (440)
Q Consensus 297 ~h~~~v~~~~~~p~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~- 373 (440)
...+.|-.++|.|... .++++..||+|+-+|+|... .++.....|...|.++++++.-.. |+++
T Consensus 327 k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~-------------~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s 393 (463)
T KOG0270|consen 327 KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG-------------KPVWTLKAHDDEISGLSVNIQTPGLLSTAS 393 (463)
T ss_pred EeccceEEEEecCCCceeEEEecCCceEEeeecCCCC-------------CceeEEEeccCCcceEEecCCCCcceeecc
Confidence 2457899999999665 56778899999999999642 134455677788999999998774 4444
Q ss_pred cCCEEEEEEcCCccchhhhhcccc---CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 374 HGSTLQWLSVETGKVLDTAEKAHE---GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 374 ~~~~i~i~d~~~~~~~~~~~~~h~---~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
.++.+++|++......... .|. +...|+++.|+.+ ..|+.||..+.++|||+.+..
T Consensus 394 ~d~~Vklw~~~~~~~~~v~--~~~~~~~rl~c~~~~~~~a-------~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 394 TDKVVKLWKFDVDSPKSVK--EHSFKLGRLHCFALDPDVA-------FTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ccceEEEEeecCCCCcccc--cccccccceeecccCCCcc-------eEEEecCccceEEEeecccCh
Confidence 4899999998655442221 222 3467778888753 689999999999999997754
No 143
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=8.7e-21 Score=165.42 Aligned_cols=264 Identities=18% Similarity=0.183 Sum_probs=174.6
Q ss_pred cccccccCcceeEEEEccCCCEE-EEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 84 VNTLKGHGDSVTGLCFSSDGKCL-ATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg~~l-~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
+..+.+|. .+.+++|+|+|+.+ ++++.|+.|++||..+++. ..... ....+..++|+|+++.+++++.+ .
T Consensus 24 ~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-----~~~~~-~~~~~~~~~~~~~g~~l~~~~~~--~ 94 (300)
T TIGR03866 24 TRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-----IGTLP-SGPDPELFALHPNGKILYIANED--D 94 (300)
T ss_pred EEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE-----EEecc-CCCCccEEEECCCCCEEEEEcCC--C
Confidence 45566554 47889999999876 5677899999999987542 12111 22346789999999988776543 2
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCC-ceEEEEeCCCCce
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEG-TDISIWHGKTGKL 241 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~~i~vwd~~~~~~ 241 (440)
..+.+|+......... +........+.++|++. +++++..+ ..+.+||..+++.
T Consensus 95 ~~l~~~d~~~~~~~~~------------------------~~~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~~~~ 149 (300)
T TIGR03866 95 NLVTVIDIETRKVLAE------------------------IPVGVEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKTYEI 149 (300)
T ss_pred CeEEEEECCCCeEEeE------------------------eeCCCCcceEEECCCCC-EEEEEecCCCeEEEEeCCCCeE
Confidence 3677776543211000 00001122345578888 56666555 4577889988877
Q ss_pred eeeeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeeeec-----c--ccceEEEEEcCCCCE
Q 013578 242 LGNVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQLKG-----H--KSAVTWLCFAPNSEQ 313 (440)
Q Consensus 242 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-----h--~~~v~~~~~~p~~~~ 313 (440)
...+... ....+++|++++++|++++ .++.|++||+..++ .+..+.. + ......++|+|++++
T Consensus 150 ~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 220 (300)
T TIGR03866 150 VDNVLVD-QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK--------VIKKITFEIPGVHPEAVQPVGIKLTKDGKT 220 (300)
T ss_pred EEEEEcC-CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce--------eeeeeeecccccccccCCccceEECCCCCE
Confidence 6655432 3457899999999886554 58999999997654 2222211 1 112356889999998
Q ss_pred EEE-EeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcCCccchh
Q 013578 314 IIT-ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSVETGKVLD 390 (440)
Q Consensus 314 l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~~~~~~~ 390 (440)
++. .+.++.+.+||+++...... .. . ...+.+++|+|+|++|+++. ++.|.+||+.+++.+.
T Consensus 221 ~~~~~~~~~~i~v~d~~~~~~~~~-------~~------~--~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~ 285 (300)
T TIGR03866 221 AFVALGPANRVAVVDAKTYEVLDY-------LL------V--GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIK 285 (300)
T ss_pred EEEEcCCCCeEEEEECCCCcEEEE-------EE------e--CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 554 45567899999986543211 00 0 11366899999999988753 7999999999999988
Q ss_pred hhhccccCCeEEEEecC
Q 013578 391 TAEKAHEGEITCMAWAP 407 (440)
Q Consensus 391 ~~~~~h~~~v~~v~~~~ 407 (440)
.+. .....+.++++|
T Consensus 286 ~~~--~~~~~~~~~~~~ 300 (300)
T TIGR03866 286 SIK--VGRLPWGVVVRP 300 (300)
T ss_pred EEE--cccccceeEeCC
Confidence 884 346668888875
No 144
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.8e-21 Score=174.08 Aligned_cols=240 Identities=18% Similarity=0.266 Sum_probs=180.5
Q ss_pred CCCCCCCCcccCccc-----cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCce
Q 013578 69 SHGDKDQNKRHHPLD-----VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143 (440)
Q Consensus 69 ~~~~~~~~~~~~~~~-----~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~ 143 (440)
.+.+.++.++.|... -.++.-|...|.+++. ++++|++|+.+++|.+|.+..++... ......-++.+
T Consensus 29 ~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~-----iL~Rftlp~r~ 101 (933)
T KOG1274|consen 29 CTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDT-----ILARFTLPIRD 101 (933)
T ss_pred EEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCCccc-----eeeeeeccceE
Confidence 444566666665432 1233348888988887 45699999999999999998876542 11222366778
Q ss_pred EEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEE
Q 013578 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIA 223 (440)
Q Consensus 144 v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 223 (440)
++|+.+|+ +++
T Consensus 102 ~~v~g~g~---------------------------------------------------------------------~ia 112 (933)
T KOG1274|consen 102 LAVSGSGK---------------------------------------------------------------------MIA 112 (933)
T ss_pred EEEecCCc---------------------------------------------------------------------EEE
Confidence 88876665 677
Q ss_pred EeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec------
Q 013578 224 SCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG------ 297 (440)
Q Consensus 224 s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~------ 297 (440)
.|+.|-.|++.++.+......+.+|..+|.++.|+|++++||+.+.||+|++||+..+. ....+.+
T Consensus 113 agsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~--------~~~tl~~v~k~n~ 184 (933)
T KOG1274|consen 113 AGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGI--------LSKTLTGVDKDNE 184 (933)
T ss_pred eecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccch--------hhhhcccCCcccc
Confidence 77788889999999888899999999999999999999999999999999999997654 2222211
Q ss_pred -c-ccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-
Q 013578 298 -H-KSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH- 374 (440)
Q Consensus 298 -h-~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~- 374 (440)
- ...+..++|+|+|..|+..+.|+.|++|+..+...... +....+...+..++|+|+|+|||++.
T Consensus 185 ~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~------------Lr~~~~ss~~~~~~wsPnG~YiAAs~~ 252 (933)
T KOG1274|consen 185 FILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFK------------LRDKLSSSKFSDLQWSPNGKYIAASTL 252 (933)
T ss_pred ccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehee------------ecccccccceEEEEEcCCCcEEeeecc
Confidence 1 34567899999988899999999999999886543211 11112223388999999999999987
Q ss_pred CCEEEEEEcCCccchhhhhccccCCeEEEEecCCC
Q 013578 375 GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKT 409 (440)
Q Consensus 375 ~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~ 409 (440)
+|.|.|||+++-+. ......|.+++|.|+.
T Consensus 253 ~g~I~vWnv~t~~~-----~~~~~~Vc~~aw~p~~ 282 (933)
T KOG1274|consen 253 DGQILVWNVDTHER-----HEFKRAVCCEAWKPNA 282 (933)
T ss_pred CCcEEEEecccchh-----ccccceeEEEecCCCC
Confidence 99999999998222 1234689999999997
No 145
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=6.2e-23 Score=189.10 Aligned_cols=250 Identities=19% Similarity=0.307 Sum_probs=194.5
Q ss_pred CcceeEEEEccCCCE----EEEeeCCCcEEEEecCCC-CCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceE
Q 013578 91 GDSVTGLCFSSDGKC----LATACADGVIRVHKLDDA-SSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSL 165 (440)
Q Consensus 91 ~~~V~~l~~s~dg~~----l~t~s~dg~v~vW~~~~~-~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~ 165 (440)
...-+.|+|.+.|.. ||.|..||.|.+||.... .......+.....|.+.|..+.|++...
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~-------------- 129 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQG-------------- 129 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCC--------------
Confidence 456789999987765 889999999999998763 2333445566677889999999987543
Q ss_pred EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeee
Q 013578 166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNV 245 (440)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 245 (440)
.+|++|+.||.|.|||+...+.-..+
T Consensus 130 ------------------------------------------------------nlLASGa~~geI~iWDlnn~~tP~~~ 155 (1049)
T KOG0307|consen 130 ------------------------------------------------------NLLASGADDGEILIWDLNKPETPFTP 155 (1049)
T ss_pred ------------------------------------------------------ceeeccCCCCcEEEeccCCcCCCCCC
Confidence 17899999999999999875443333
Q ss_pred --eCCCCcccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc--ceEEEEEcCCCC-EEEEEeC
Q 013578 246 --DTNQLKNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS--AVTWLCFAPNSE-QIITASK 319 (440)
Q Consensus 246 --~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~p~~~-~l~s~~~ 319 (440)
......|.+++|+.. ...|++++.+|++.|||++..+ .+..+..|.+ .+..++|+|+.. .|++++.
T Consensus 156 ~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~--------pii~ls~~~~~~~~S~l~WhP~~aTql~~As~ 227 (1049)
T KOG0307|consen 156 GSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK--------PIIKLSDTPGRMHCSVLAWHPDHATQLLVASG 227 (1049)
T ss_pred CCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC--------cccccccCCCccceeeeeeCCCCceeeeeecC
Confidence 124567999999985 5678899999999999998765 4555555544 477899999764 5677765
Q ss_pred CC---cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC-CEEEE-ecCCEEEEEEcCCccchhhhhc
Q 013578 320 DG---TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG-KILAA-THGSTLQWLSVETGKVLDTAEK 394 (440)
Q Consensus 320 dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~-~~~~~i~i~d~~~~~~~~~~~~ 394 (440)
|. .|.+||+|... .+.....+|...|.++.|++.+ ++|++ |.|+.|.+|+.++++.+..+.
T Consensus 228 dd~~PviqlWDlR~as-------------sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p- 293 (1049)
T KOG0307|consen 228 DDSAPVIQLWDLRFAS-------------SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP- 293 (1049)
T ss_pred CCCCceeEeecccccC-------------CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC-
Confidence 54 59999998432 1333446788889999999987 56665 459999999999999999984
Q ss_pred cccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 395 AHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 395 ~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
....-+..+.|+|..+ .+++.++-||.|.|+.+.+.
T Consensus 294 ~~~nW~fdv~w~pr~P-------~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 294 AQGNWCFDVQWCPRNP-------SVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred CCCcceeeeeecCCCc-------chhhhheeccceeeeeeecC
Confidence 5677899999999874 58999999999999998765
No 146
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.89 E-value=3.6e-22 Score=172.84 Aligned_cols=123 Identities=21% Similarity=0.314 Sum_probs=100.5
Q ss_pred cceEEEEEcC-CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC-CEEEEe-cCC
Q 013578 300 SAVTWLCFAP-NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG-KILAAT-HGS 376 (440)
Q Consensus 300 ~~v~~~~~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~-~~~ 376 (440)
..|+.+.|.| |...|+.++.||.|++|.+..+.... ....+......|...|+.+.|+|-. ..|+++ .|.
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e-------~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~ 700 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE-------NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDS 700 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCc-------ccCCcceeeecccceEEEEEecchhhhHhhhhhccc
Confidence 3578889998 66789999999999999998654322 1222333445667789999999964 355554 599
Q ss_pred EEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 377 TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 377 ~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
+|++||+.+++....+ .+|.+.|.+++|+|+| ++++|.+.||+|+||+.++.+
T Consensus 701 Ti~lWDl~~~~~~~~l-~gHtdqIf~~AWSpdG--------r~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 701 TIELWDLANAKLYSRL-VGHTDQIFGIAWSPDG--------RRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred eeeeeehhhhhhhhee-ccCcCceeEEEECCCC--------cceeeeecCceEEEeCCCCCC
Confidence 9999999999998888 6999999999999999 999999999999999988765
No 147
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=5.1e-22 Score=161.19 Aligned_cols=191 Identities=22% Similarity=0.339 Sum_probs=151.7
Q ss_pred EEEEeeCCceEEEEeCCC----------------CceeeeeeCCCCcccEEEecCC-CCeEEEEecCCCEEEEEeEecCC
Q 013578 221 IIASCSEGTDISIWHGKT----------------GKLLGNVDTNQLKNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKD 283 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~----------------~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~ 283 (440)
+.++-+..|.|+||++.. .+++.++.+|...-..++|||- ...|++|..-+.|++|....+.
T Consensus 167 ~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~- 245 (440)
T KOG0302|consen 167 LCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS- 245 (440)
T ss_pred eeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCc-
Confidence 677888999999999742 3467778888888899999993 3357888888999999987633
Q ss_pred CceeeeeeeeeeeccccceEEEEEcCCC-CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEE
Q 013578 284 GLVKAVTSVMQLKGHKSAVTWLCFAPNS-EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS 362 (440)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 362 (440)
..+ ....+.+|...|-.++|||.. ..|++||.||+|+|||++.+... +......|...|+.++
T Consensus 246 W~v----d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~------------~~~~~kAh~sDVNVIS 309 (440)
T KOG0302|consen 246 WKV----DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK------------AAVSTKAHNSDVNVIS 309 (440)
T ss_pred eee----cCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc------------ceeEeeccCCceeeEE
Confidence 111 234567799999999999965 47899999999999999965221 1112256667899999
Q ss_pred eCCCCCEEEEec-CCEEEEEEcCC---ccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 363 LSSDGKILAATH-GSTLQWLSVET---GKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 363 ~s~~g~~l~~~~-~~~i~i~d~~~---~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
|+.+-.+||+|+ +|.++|||++. ++++..+ +.|..+|++|.|+|... ..|+++|.|..|.+||+.-
T Consensus 310 Wnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f-k~Hk~pItsieW~p~e~-------s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 310 WNRREPLLASGGDDGTLSIWDLRQFKSGQPVATF-KYHKAPITSIEWHPHED-------SVIAASGEDNQITIWDLSV 379 (440)
T ss_pred ccCCcceeeecCCCceEEEEEhhhccCCCcceeE-EeccCCeeEEEeccccC-------ceEEeccCCCcEEEEEeec
Confidence 999988999876 79999999865 5567777 58999999999999752 6889999999999999964
No 148
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.89 E-value=6.6e-21 Score=176.69 Aligned_cols=335 Identities=16% Similarity=0.212 Sum_probs=209.8
Q ss_pred CCCCCCCCCCCcccCccccccccccCcceeEEEEccCC-CEEEEeeCCCcEEEEecCCCCCc--ceeeEEecCCCCCCCc
Q 013578 66 HSHSHGDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDG-KCLATACADGVIRVHKLDDASSK--SFKFLRINLPPGGPPT 142 (440)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~dg-~~l~t~s~dg~v~vW~~~~~~~~--~~~~~~~~~~~~~~v~ 142 (440)
..+..+.++..++.....+..|..|...|..++.+++. .+++|||.||+||+|++...... ..+........+..+.
T Consensus 1023 ~~~~~~~p~~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~ 1102 (1431)
T KOG1240|consen 1023 SAWSVGSPPPGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVE 1102 (1431)
T ss_pred chhhcCCCCCCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceE
Confidence 34555666677777888899999999999999998865 99999999999999998764433 2222233334668899
Q ss_pred eEEEccCCCeEEEEeecCCcceEEeecccc--ccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCe
Q 013578 143 AVAFADNATSIVVATHNLSGCSLYMYGEEK--AISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGST 220 (440)
Q Consensus 143 ~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (440)
.+.+.+.+..+++++.|+....+.+-..+. ............. ...+..+.+.. ...+..
T Consensus 1103 ~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~--------------~g~vv~m~a~~----~~~~S~ 1164 (1431)
T KOG1240|consen 1103 KVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKK--------------DGVVVSMHAFT----AIVQSH 1164 (1431)
T ss_pred EEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccC--------------CCceEEeeccc----ccccce
Confidence 999999999999998885444333322110 0000000011011 11111111111 112223
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeee--CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee-ec
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVD--TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL-KG 297 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~ 297 (440)
.++.+..-+.|..||.+.......++ ...+.|++++.+|.++++++|+..|.+.+||++.+. ++... .+
T Consensus 1165 ~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~--------~i~sw~~P 1236 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRV--------PILSWEHP 1236 (1431)
T ss_pred eEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCc--------eeecccCc
Confidence 67777778889999998776554443 345779999999999999999999999999999875 33332 23
Q ss_pred cccceEEEEEcCCC---CEEEEE-e-CCCcEEEEecCccccccCCCCc--cccccc--ccc-CCCCCeeeeeeEEeC-CC
Q 013578 298 HKSAVTWLCFAPNS---EQIITA-S-KDGTLRVWNINVRYHLDEDPKT--LKVLPI--PLL-DSNGATLQYDRLSLS-SD 366 (440)
Q Consensus 298 h~~~v~~~~~~p~~---~~l~s~-~-~dg~i~iwd~~~~~~~~~~~~~--~~~~~~--~~~-~~~~~~~~v~~~~~s-~~ 366 (440)
+..+|..+..+|-. ...+++ + ..+.|.+|++.++.+....... ...+.. +.. ....+........+. ++
T Consensus 1237 ~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~ 1316 (1431)
T KOG1240|consen 1237 ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKN 1316 (1431)
T ss_pred ccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCC
Confidence 55788888887733 344444 4 5788999999988553221111 111110 110 001111222223333 33
Q ss_pred CCEEEEecCCEEEEEEcCCccch-----------------------------hhh-------------------------
Q 013578 367 GKILAATHGSTLQWLSVETGKVL-----------------------------DTA------------------------- 392 (440)
Q Consensus 367 g~~l~~~~~~~i~i~d~~~~~~~-----------------------------~~~------------------------- 392 (440)
+-.+.+|+|..|+.||....+.. ..+
T Consensus 1317 ~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ 1396 (1431)
T KOG1240|consen 1317 GFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSD 1396 (1431)
T ss_pred ceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCC
Confidence 44444566999999997543222 000
Q ss_pred -hccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578 393 -EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL 433 (440)
Q Consensus 393 -~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~ 433 (440)
...|...|+++++..... .+|++++.||.|+||.
T Consensus 1397 ps~~H~d~Itdma~~~~~q-------~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1397 PSTYHHDPITDMATLKSEQ-------PLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred CcccccchhhhhhhhccCc-------cEEEEecCCCeeeecC
Confidence 034677888888776531 6999999999999995
No 149
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=2.3e-21 Score=172.79 Aligned_cols=301 Identities=19% Similarity=0.224 Sum_probs=214.8
Q ss_pred ccccccccccCcceeEEEEc-cCCCEEEEeeCCCcEEEEecCCCCCcceeeE----------E---ecCCCCCCCceEEE
Q 013578 81 PLDVNTLKGHGDSVTGLCFS-SDGKCLATACADGVIRVHKLDDASSKSFKFL----------R---INLPPGGPPTAVAF 146 (440)
Q Consensus 81 ~~~~~~l~~H~~~V~~l~~s-~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~----------~---~~~~~~~~v~~v~~ 146 (440)
|..++.-.||..+-.|++|. .+|.++.+++.|++++.+++........... . ...-.-.+|..+++
T Consensus 324 pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~ 403 (910)
T KOG1539|consen 324 PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAF 403 (910)
T ss_pred chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeec
Confidence 34567778999999999998 6899999999999999998754321100000 0 00001134555555
Q ss_pred ccC----CCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEE
Q 013578 147 ADN----ATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTII 222 (440)
Q Consensus 147 ~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 222 (440)
... -..++++..+ ....+.|+..+...-. .......... ......+++.++-|+ +.
T Consensus 404 ~~~RE~~W~Nv~~~h~~--~~~~~tW~~~n~~~G~------------~~L~~~~~~~-----~~~~~~av~vs~CGN-F~ 463 (910)
T KOG1539|consen 404 ENAREKEWDNVITAHKG--KRSAYTWNFRNKTSGR------------HVLDPKRFKK-----DDINATAVCVSFCGN-FV 463 (910)
T ss_pred ccchhhhhcceeEEecC--cceEEEEeccCccccc------------EEecCccccc-----cCcceEEEEEeccCc-eE
Confidence 432 1234444443 3445555544332100 0000000000 001122233356666 88
Q ss_pred EEeeCCceEEEEeCCCCceeeee---eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccc
Q 013578 223 ASCSEGTDISIWHGKTGKLLGNV---DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK 299 (440)
Q Consensus 223 ~s~~~d~~i~vwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~ 299 (440)
+.|...|+|-+|++++|-....+ ..|..+|+.++...-++.+++++.+|.+.+||+.... ....+. -.
T Consensus 464 ~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~--------l~~~l~-l~ 534 (910)
T KOG1539|consen 464 FIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV--------LKKSLR-LG 534 (910)
T ss_pred EEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc--------eeeeec-cC
Confidence 88999999999999999887777 5789999999999999999999999999999986543 344443 34
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEE
Q 013578 300 SAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTL 378 (440)
Q Consensus 300 ~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i 378 (440)
..+.++..+-....++.+..|-.|+++|+.+.+.. ....+|...|+.++|||||++|++++ |+.|
T Consensus 535 ~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv--------------R~f~gh~nritd~~FS~DgrWlisasmD~tI 600 (910)
T KOG1539|consen 535 SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV--------------REFWGHGNRITDMTFSPDGRWLISASMDSTI 600 (910)
T ss_pred CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhh--------------HHhhccccceeeeEeCCCCcEEEEeecCCcE
Confidence 66888888888889999999999999999876432 23457888899999999999999977 8999
Q ss_pred EEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCC-CeEEEEeC
Q 013578 379 QWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD-KKVKLWLA 434 (440)
Q Consensus 379 ~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D-g~i~vw~~ 434 (440)
++||+.++.++..+. -+.+++.+.|+|++ .+|||...| .-|++|.=
T Consensus 601 r~wDlpt~~lID~~~--vd~~~~sls~SPng--------D~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 601 RTWDLPTGTLIDGLL--VDSPCTSLSFSPNG--------DFLATVHVDQNGIYLWSN 647 (910)
T ss_pred EEEeccCcceeeeEe--cCCcceeeEECCCC--------CEEEEEEecCceEEEEEc
Confidence 999999999998874 67789999999999 899999999 67999953
No 150
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.89 E-value=5.6e-22 Score=153.40 Aligned_cols=306 Identities=18% Similarity=0.192 Sum_probs=190.4
Q ss_pred CccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeec
Q 013578 80 HPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHN 159 (440)
Q Consensus 80 ~~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~ 159 (440)
.|.++..|++|.+.|+++.|..++ +|.+|..-|.|++|++.+.... ......+...|+.+.-.|+ ..+.+-+.+
T Consensus 3 pPdP~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~----~~~r~~g~~~it~lq~~p~-d~l~tqgRd 76 (323)
T KOG0322|consen 3 PPDPFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDL----PLIRLFGRLFITNLQSIPN-DSLDTQGRD 76 (323)
T ss_pred CCCCeeEeccccchheehhhccch-hhhcccccceEEEEEeecCccc----hhhhhhccceeeceeecCC-cchhhcCCC
Confidence 355678889999999999998776 5999999999999999876532 1122234466777777776 344444444
Q ss_pred CCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCe---EEEEeeCCc-eEEEEe
Q 013578 160 LSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGST---IIASCSEGT-DISIWH 235 (440)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~s~~~d~-~i~vwd 235 (440)
..+.+|........ ....+.....+.......+.++. .++.-++.. .+++-|
T Consensus 77 ---~~L~lw~ia~s~~i---------------------~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D 132 (323)
T KOG0322|consen 77 ---PLLILWTIAYSAFI---------------------SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQD 132 (323)
T ss_pred ---ceEEEEEccCcceE---------------------EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhc
Confidence 44555544331100 00011111112222222222221 122211111 122233
Q ss_pred CCCCceeeeee----CCCCcccEEEecC-CC--CeEEEEecCCCEEEEEeEecCCCc--eeeeeeeeeeeccccceEEEE
Q 013578 236 GKTGKLLGNVD----TNQLKNNMAAISP-NG--RFLAAAAFTADVKVWEIVYSKDGL--VKAVTSVMQLKGHKSAVTWLC 306 (440)
Q Consensus 236 ~~~~~~~~~~~----~~~~~v~~~~~s~-~~--~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~h~~~v~~~~ 306 (440)
......+.... ...+.+.|..+.. ++ -++++|.++|.+.+||+..+.... ............|..+|.++.
T Consensus 133 ~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsld 212 (323)
T KOG0322|consen 133 GGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLD 212 (323)
T ss_pred cCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeee
Confidence 32222222221 1233455555332 22 356788899999999997752100 011223445667999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCC
Q 013578 307 FAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVET 385 (440)
Q Consensus 307 ~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~ 385 (440)
|.+....=++|+.+..+..|+++-....-+.... .... ...+..+..-||++++|++. |+.|++|+.++
T Consensus 213 yas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e------~~lk----npGv~gvrIRpD~KIlATAGWD~RiRVyswrt 282 (323)
T KOG0322|consen 213 YASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE------ITLK----NPGVSGVRIRPDGKILATAGWDHRIRVYSWRT 282 (323)
T ss_pred echhhcCCcCCCccccceeeeeccccCcccccce------EEec----CCCccceEEccCCcEEeecccCCcEEEEEecc
Confidence 9886666678888889999998733111000000 0011 12366789999999999865 99999999999
Q ss_pred ccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578 386 GKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA 434 (440)
Q Consensus 386 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~ 434 (440)
.+.+..+ +-|.+.|++++|+|+. .++|.+|.|++|.+|++
T Consensus 283 l~pLAVL-kyHsagvn~vAfspd~--------~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 283 LNPLAVL-KYHSAGVNAVAFSPDC--------ELMAAASKDARISLWKL 322 (323)
T ss_pred CCchhhh-hhhhcceeEEEeCCCC--------chhhhccCCceEEeeec
Confidence 9999999 5899999999999997 79999999999999986
No 151
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=5.7e-21 Score=165.39 Aligned_cols=261 Identities=16% Similarity=0.236 Sum_probs=179.3
Q ss_pred EEEcc---CCCEEEEeeCCCcEEEEecCCCCCc-ceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccc
Q 013578 97 LCFSS---DGKCLATACADGVIRVHKLDDASSK-SFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEK 172 (440)
Q Consensus 97 l~~s~---dg~~l~t~s~dg~v~vW~~~~~~~~-~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 172 (440)
..|++ ....|+.+..||.|.++|.....-. ....+.....|...|..+.|.| ++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge--------------------- 112 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GE--------------------- 112 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cc---------------------
Confidence 56665 3457899999999999998754322 1122344556777788887776 32
Q ss_pred ccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeee--eeCCCC
Q 013578 173 AISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN--VDTNQL 250 (440)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~--~~~~~~ 250 (440)
..|++.+.|.++++||+++.++... +.+|..
T Consensus 113 -----------------------------------------------~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~ 145 (720)
T KOG0321|consen 113 -----------------------------------------------SLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTG 145 (720)
T ss_pred -----------------------------------------------eeEEEccCCceeeeeeeccceeecceeeccccc
Confidence 2788888999999999999988776 889999
Q ss_pred cccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCce-------------------eeeeeeeeeeccccceEE---EEE
Q 013578 251 KNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLV-------------------KAVTSVMQLKGHKSAVTW---LCF 307 (440)
Q Consensus 251 ~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~-------------------~~~~~~~~~~~h~~~v~~---~~~ 307 (440)
.+.+++|.|. ...|++|+.||.|.|||++....... ...+.+...+++...|.+ +.+
T Consensus 146 SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~ 225 (720)
T KOG0321|consen 146 SVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVL 225 (720)
T ss_pred ccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEE
Confidence 9999999995 56889999999999999975431000 001122333445555555 555
Q ss_pred cCCCCEEEEEeC-CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE-EecCCEEEEEEcCC
Q 013578 308 APNSEQIITASK-DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA-ATHGSTLQWLSVET 385 (440)
Q Consensus 308 ~p~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~~~~i~i~d~~~ 385 (440)
..|...||+++. |+.|++||++......... .......+.. ......+.++.....|.+|. .+.|+.|++|++.+
T Consensus 226 fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~e-p~~~~~~~t~--skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s 302 (720)
T KOG0321|consen 226 FKDESTLASAGAADSTIKVWDLRKNYTAYRQE-PRGSDKYPTH--SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRS 302 (720)
T ss_pred EeccceeeeccCCCcceEEEeecccccccccC-CCcccCccCc--ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccc
Confidence 678888999887 9999999999776543211 1111111111 22345567777777778665 47799999999987
Q ss_pred ccc--hhhhhccccC--CeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 386 GKV--LDTAEKAHEG--EITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 386 ~~~--~~~~~~~h~~--~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
... +..+ .++.. --..-..+|++ .+|++|+.|....+|.+.+.+
T Consensus 303 ~s~sP~~~~-sg~~~~sf~vks~lSpd~--------~~l~SgSsd~~ayiw~vs~~e 350 (720)
T KOG0321|consen 303 LSISPVAEF-SGKLNSSFYVKSELSPDD--------CSLLSGSSDEQAYIWVVSSPE 350 (720)
T ss_pred cCcCchhhc-cCcccceeeeeeecCCCC--------ceEeccCCCcceeeeeecCcc
Confidence 543 3333 22221 11223467887 899999999999999998765
No 152
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.5e-20 Score=146.84 Aligned_cols=340 Identities=18% Similarity=0.171 Sum_probs=211.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHhccccc-cchhhcccccccCCC-----CCCCCCCC-----CCCCC--------------
Q 013578 3 PVLSITVVSVVLGALIAIIFFKSYFTK-RRSEIKSIAKTELEP-----DHQKKPTK-----PSQPI-------------- 57 (440)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~-----~~~~~-------------- 57 (440)
|.|+..+++.++.-.++..++.+..+. .+.+...+..+...+ .+.++-+. +.|+.
T Consensus 7 ~~l~~~l~g~~~a~g~~~~y~~k~~~~~~q~a~~~p~D~v~~~~s~~p~kkk~hqr~~~~k~~q~~f~Hpl~~~~LKgH~ 86 (420)
T KOG2096|consen 7 PILIGGLVGFVTVMGVAIIYVAKKEQQGEQEAVDVPMDEVTETISEEPVKKKKHQRNDQWKAKQPTFVHPLNVSVLKGHK 86 (420)
T ss_pred HHHHHHHHHHHHHHHHHhhheeccCChhhhhhccCCCCcccCccccCCcchhcccchhhhcccCCCcccchhhhhhhccC
Confidence 667778888888888888888876654 444444444433332 22111111 01100
Q ss_pred ----CCCCCCCCCCCCCCCCCCCcccCccccccccccC--------cceeEEEEccCCCEEE-EeeCCCcEEEEecCCCC
Q 013578 58 ----SKKSHSKPHSHSHGDKDQNKRHHPLDVNTLKGHG--------DSVTGLCFSSDGKCLA-TACADGVIRVHKLDDAS 124 (440)
Q Consensus 58 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~--------~~V~~l~~s~dg~~l~-t~s~dg~v~vW~~~~~~ 124 (440)
-...++.-+..++...|+.+++|...=...+.|. +--+.++|+||-+-++ ++-...++++|.+...+
T Consensus 87 ~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~ 166 (420)
T KOG2096|consen 87 KEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKT 166 (420)
T ss_pred CceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecc
Confidence 0012223344556678899999977544444442 3467899999976544 45566689999876432
Q ss_pred Ccce--ee-----EEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeeccccc
Q 013578 125 SKSF--KF-----LRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKV 197 (440)
Q Consensus 125 ~~~~--~~-----~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (440)
.... .. +.....|.-.+..+-...++++|++++.+ ..+.+|+........
T Consensus 167 dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~d---t~i~lw~lkGq~L~~-------------------- 223 (420)
T KOG2096|consen 167 DGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLD---TKICLWDLKGQLLQS-------------------- 223 (420)
T ss_pred cCCCCcccccccccccchhcccceEEEeecCCceEEEEecCC---CcEEEEecCCceeee--------------------
Confidence 2111 11 11223345567777778888999999877 455666554321100
Q ss_pred ccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCC---CC-----ceeeeeeCCCCcccEEEecCCCCeEEEEec
Q 013578 198 HDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK---TG-----KLLGNVDTNQLKNNMAAISPNGRFLAAAAF 269 (440)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~---~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 269 (440)
+-........+..+|+|+ ++++++-.-.|++|.+- .| ..+..+.+|+..|..++|+++...+++.+.
T Consensus 224 ----idtnq~~n~~aavSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk 298 (420)
T KOG2096|consen 224 ----IDTNQSSNYDAAVSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK 298 (420)
T ss_pred ----eccccccccceeeCCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEec
Confidence 000011112234489999 88888877789999863 22 235677899999999999999999999999
Q ss_pred CCCEEEEEeEecCCCceeeeeee----eeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCcccccc
Q 013578 270 TADVKVWEIVYSKDGLVKAVTSV----MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLP 345 (440)
Q Consensus 270 dg~i~i~d~~~~~~~~~~~~~~~----~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 345 (440)
||+++|||.+......... ..+ ..+..-.+.-..++.+|+|+.|+.... ..++++..+++.....
T Consensus 299 DG~wriwdtdVrY~~~qDp-k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~--------- 367 (420)
T KOG2096|consen 299 DGKWRIWDTDVRYEAGQDP-KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPE--------- 367 (420)
T ss_pred CCcEEEeeccceEecCCCc-hHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchh---------
Confidence 9999999975432110000 011 112222334458999999998877654 4899999886543211
Q ss_pred ccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCC
Q 013578 346 IPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVET 385 (440)
Q Consensus 346 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~ 385 (440)
....|...|.+++|+++|++++++.|..++++.-..
T Consensus 368 ----~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~ntp 403 (420)
T KOG2096|consen 368 ----LEDIHSTTISSISYSSDGKYIATCGDRYVRVIRNTP 403 (420)
T ss_pred ----HHHhhcCceeeEEecCCCcEEeeecceeeeeecCCC
Confidence 112345668999999999999999999999986433
No 153
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.2e-20 Score=149.31 Aligned_cols=244 Identities=18% Similarity=0.267 Sum_probs=173.8
Q ss_pred CCCCCCCCcccCcc--------ccccccccCcceeEEEEcc--CCCEEEEeeCCCcEEEEecCCCC--C--cceeeEEec
Q 013578 69 SHGDKDQNKRHHPL--------DVNTLKGHGDSVTGLCFSS--DGKCLATACADGVIRVHKLDDAS--S--KSFKFLRIN 134 (440)
Q Consensus 69 ~~~~~~~~~~~~~~--------~~~~l~~H~~~V~~l~~s~--dg~~l~t~s~dg~v~vW~~~~~~--~--~~~~~~~~~ 134 (440)
++.+.|+..++|.. +....+.|.+.|..+.|.+ -|+.+|+++.|++++||.-.... . ..+......
T Consensus 29 AtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl 108 (361)
T KOG2445|consen 29 ATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTL 108 (361)
T ss_pred eeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEe
Confidence 45566666666652 3456788999999999976 48999999999999999863211 1 233444455
Q ss_pred CCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeeccccccc
Q 013578 135 LPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYG 214 (440)
Q Consensus 135 ~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (440)
......|+++.|.|...
T Consensus 109 ~DsrssV~DV~FaP~hl--------------------------------------------------------------- 125 (361)
T KOG2445|consen 109 VDSRSSVTDVKFAPKHL--------------------------------------------------------------- 125 (361)
T ss_pred ecCCcceeEEEecchhc---------------------------------------------------------------
Confidence 56667889999988532
Q ss_pred CCCCCeEEEEeeCCceEEEEeCCCC------ceeeeee-------CCCCcccEEEecCC---CCeEEEEecC-----CCE
Q 013578 215 TADGSTIIASCSEGTDISIWHGKTG------KLLGNVD-------TNQLKNNMAAISPN---GRFLAAAAFT-----ADV 273 (440)
Q Consensus 215 ~~~~~~~l~s~~~d~~i~vwd~~~~------~~~~~~~-------~~~~~v~~~~~s~~---~~~l~~~~~d-----g~i 273 (440)
|- .+++++.||.||||+...- .....+. .+..+..|+.|+|. ..+||+|+.+ +.+
T Consensus 126 ---GL-klA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~ 201 (361)
T KOG2445|consen 126 ---GL-KLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKV 201 (361)
T ss_pred ---ce-EEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccce
Confidence 11 7899999999999986543 2223333 34556778999874 4678888766 579
Q ss_pred EEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCC----CEEEEEeCCCcEEEEecCccccccC-----CCCccccc
Q 013578 274 KVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS----EQIITASKDGTLRVWNINVRYHLDE-----DPKTLKVL 344 (440)
Q Consensus 274 ~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~----~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~ 344 (440)
+||...... +.+..+..+.+|..+|+.++|.|+- ..||+++.|| |+||.+......-. .+.....+
T Consensus 202 ~Iye~~e~~----rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l 276 (361)
T KOG2445|consen 202 KIYEYNENG----RKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDL 276 (361)
T ss_pred EEEEecCCc----ceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCcccc
Confidence 999876554 4555677888999999999999953 4689999999 99999985321100 11111112
Q ss_pred ccc-ccCCCCCeeeeeeEEeCCCCCEEEE-ecCCEEEEEEcC
Q 013578 345 PIP-LLDSNGATLQYDRLSLSSDGKILAA-THGSTLQWLSVE 384 (440)
Q Consensus 345 ~~~-~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~i~i~d~~ 384 (440)
++. +....+|..+|.++.|+--|..|++ |+||.|++|...
T Consensus 277 ~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 277 PVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 222 2345688889999999999999997 569999999754
No 154
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=1.8e-20 Score=157.73 Aligned_cols=188 Identities=11% Similarity=0.168 Sum_probs=155.7
Q ss_pred eEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc-
Q 013578 220 TIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH- 298 (440)
Q Consensus 220 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h- 298 (440)
.++++|+..+.|+|||++...+.+.+..|...|+++.++....+||+++..|.|.|..+.++. ....+.-.
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~--------~tt~f~~~s 163 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQ--------KTTTFTIDS 163 (673)
T ss_pred eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCc--------cccceecCC
Confidence 389999999999999999777888899999999999999999999999999999999987765 33334433
Q ss_pred ccceEEEEEcCCCCE-EEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE--ecC
Q 013578 299 KSAVTWLCFAPNSEQ-IITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA--THG 375 (440)
Q Consensus 299 ~~~v~~~~~~p~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--~~~ 375 (440)
...|.-+.|+|..++ |.+++.+|.|.+||+...... ......|..+...++|+|....|.+ |.|
T Consensus 164 gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~-------------~~~~~~HsAP~~gicfspsne~l~vsVG~D 230 (673)
T KOG4378|consen 164 GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI-------------FHASEAHSAPCRGICFSPSNEALLVSVGYD 230 (673)
T ss_pred CCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc-------------cchhhhccCCcCcceecCCccceEEEeccc
Confidence 344668999998775 568889999999999865432 2333456677788999998875543 679
Q ss_pred CEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 376 STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 376 ~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
..|.+||..+.+....+. .+.+...++|.++| .+|+.|...|.|..||++..+
T Consensus 231 kki~~yD~~s~~s~~~l~--y~~Plstvaf~~~G--------~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 231 KKINIYDIRSQASTDRLT--YSHPLSTVAFSECG--------TYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred ceEEEeecccccccceee--ecCCcceeeecCCc--------eEEEeecCCceEEEEecccCC
Confidence 999999999888877774 66789999999999 899999999999999998764
No 155
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=6.6e-21 Score=158.79 Aligned_cols=284 Identities=14% Similarity=0.140 Sum_probs=195.9
Q ss_pred CCCCCCCCCCCCCCCCCCCcccCcc------ccccccccCcceeEEEEccCCC-EEEEeeCCCcEEEEecCCCCCcceee
Q 013578 58 SKKSHSKPHSHSHGDKDQNKRHHPL------DVNTLKGHGDSVTGLCFSSDGK-CLATACADGVIRVHKLDDASSKSFKF 130 (440)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~H~~~V~~l~~s~dg~-~l~t~s~dg~v~vW~~~~~~~~~~~~ 130 (440)
+...++.......++.++..+++.. .++.+.--..+|.+++|.|+|. .+++++.-..+..||+.+.+......
T Consensus 218 sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~ 297 (514)
T KOG2055|consen 218 SVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKP 297 (514)
T ss_pred EEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccC
Confidence 3444555555566677777776633 3555555578999999999998 99999999999999998765442222
Q ss_pred EEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeeccc
Q 013578 131 LRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGAS 210 (440)
Q Consensus 131 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (440)
.. ......+.....++++++|+..+..+ .|.+............+..+ ...
T Consensus 298 ~~--g~e~~~~e~FeVShd~~fia~~G~~G---~I~lLhakT~eli~s~KieG------------------------~v~ 348 (514)
T KOG2055|consen 298 PY--GVEEKSMERFEVSHDSNFIAIAGNNG---HIHLLHAKTKELITSFKIEG------------------------VVS 348 (514)
T ss_pred CC--CcccchhheeEecCCCCeEEEcccCc---eEEeehhhhhhhhheeeecc------------------------EEe
Confidence 11 11234677888999999999998773 44444433332211111111 111
Q ss_pred ccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCC-CcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeee
Q 013578 211 ATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQ-LKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAV 289 (440)
Q Consensus 211 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 289 (440)
...++.+++ .|++++.+|.|.+||++...+++.+.... -.-+.++.++++.+||+|+..|.|.|||....... ...
T Consensus 349 ~~~fsSdsk-~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s--~~P 425 (514)
T KOG2055|consen 349 DFTFSSDSK-ELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAS--TNP 425 (514)
T ss_pred eEEEecCCc-EEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhcc--CCC
Confidence 223456776 67777778899999999999988876432 22356788899999999999999999996543211 122
Q ss_pred eeeeeeeccccceEEEEEcCCCCEEEEEe--CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC
Q 013578 290 TSVMQLKGHKSAVTWLCFAPNSEQIITAS--KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG 367 (440)
Q Consensus 290 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 367 (440)
+++..+..-...|++|+|+|+++.||.+| .+..+|+-.+....... .++.. ......++|++|||.+
T Consensus 426 kPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFs-------NfP~~----n~~vg~vtc~aFSP~s 494 (514)
T KOG2055|consen 426 KPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFS-------NFPTS----NTKVGHVTCMAFSPNS 494 (514)
T ss_pred CchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeec-------cCCCC----CCcccceEEEEecCCC
Confidence 35566666678899999999999988777 46789998887543322 22111 2334558999999999
Q ss_pred CEEEEec-CCEEEEEEcC
Q 013578 368 KILAATH-GSTLQWLSVE 384 (440)
Q Consensus 368 ~~l~~~~-~~~i~i~d~~ 384 (440)
-+||.|. +|.+.+|.+.
T Consensus 495 G~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 495 GYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ceEEeecCCCceeeEeec
Confidence 9999998 7999999753
No 156
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=8e-20 Score=159.45 Aligned_cols=316 Identities=15% Similarity=0.196 Sum_probs=216.1
Q ss_pred cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC 163 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~ 163 (440)
...+..-.+.|++++.+|.+..++.|+.||.+...+...+. ....+.+....+.+.++.|+|++..++.++.| .
T Consensus 103 ~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~---I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D---g 176 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDK---ITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID---G 176 (691)
T ss_pred eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCce---EEEEeecccccceEEEEEecCCccEEEecccC---c
Confidence 34455567899999999999999999999977666665443 23344445556899999999999999999988 5
Q ss_pred eEEeeccccccccc--cccccCCCC-CCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc
Q 013578 164 SLYMYGEEKAISTN--EGKQQSKLP-GPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK 240 (440)
Q Consensus 164 ~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 240 (440)
.+.+|+........ ..+....-. .+...|.... -.++ .+++|...|+|.+||...+.
T Consensus 177 ~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~------------------Lrd~--tI~sgDS~G~V~FWd~~~gT 236 (691)
T KOG2048|consen 177 VIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLF------------------LRDS--TIASGDSAGTVTFWDSIFGT 236 (691)
T ss_pred eEEEEEcCCCceEEEeeecccccccCCceEEEEEEE------------------eecC--cEEEecCCceEEEEcccCcc
Confidence 67888776553222 000000001 2233443322 2233 69999999999999999999
Q ss_pred eeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCC
Q 013578 241 LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKD 320 (440)
Q Consensus 241 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d 320 (440)
.++.+..|...|.+++.+++++++++++.|++|..|.....+. ++........|...|.+++..++ .+++|+.|
T Consensus 237 LiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~----~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d 310 (691)
T KOG2048|consen 237 LIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS----EWVINSRRDLHAHDVRSMAVIEN--ALISGGRD 310 (691)
T ss_pred hhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc----ceeeeccccCCcccceeeeeecc--eEEeccee
Confidence 9999999999999999999999999999999999998766552 24344455678888999999876 88999999
Q ss_pred CcEEEEecCccccccCC------------------------CCccccc--ccc-----------ccCCCCCeeeeeeEEe
Q 013578 321 GTLRVWNINVRYHLDED------------------------PKTLKVL--PIP-----------LLDSNGATLQYDRLSL 363 (440)
Q Consensus 321 g~i~iwd~~~~~~~~~~------------------------~~~~~~~--~~~-----------~~~~~~~~~~v~~~~~ 363 (440)
.++.+-..+........ ....... ... ..-.......|.+.+.
T Consensus 311 ~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~ai 390 (691)
T KOG2048|consen 311 FTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAI 390 (691)
T ss_pred eEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeecc
Confidence 88887655431110000 0000000 000 0000112234788999
Q ss_pred CCCCCEEEEecCCEEEEEEcCC--------------------------------------------------ccchhhh-
Q 013578 364 SSDGKILAATHGSTLQWLSVET--------------------------------------------------GKVLDTA- 392 (440)
Q Consensus 364 s~~g~~l~~~~~~~i~i~d~~~--------------------------------------------------~~~~~~~- 392 (440)
||+|.+++.+.=..+++|.+.. .+.+..+
T Consensus 391 SPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~ 470 (691)
T KOG2048|consen 391 SPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQ 470 (691)
T ss_pred CCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccc
Confidence 9999999987644444443322 0111111
Q ss_pred hccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 393 EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 393 ~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
.++-...|..+..+++| ++|+..+.+|.|.+|++.+.+.
T Consensus 471 ~~~~~~~I~~l~~SsdG--------~yiaa~~t~g~I~v~nl~~~~~ 509 (691)
T KOG2048|consen 471 SQAKCPSISRLVVSSDG--------NYIAAISTRGQIFVYNLETLES 509 (691)
T ss_pred cccCCCcceeEEEcCCC--------CEEEEEeccceEEEEEccccee
Confidence 02234578999999999 8999999999999999998764
No 157
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1.6e-21 Score=166.46 Aligned_cols=267 Identities=18% Similarity=0.246 Sum_probs=190.4
Q ss_pred CccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecC---CCCCcceeeEEecCCCCCCCceEEEccCCCeEEEE
Q 013578 80 HPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLD---DASSKSFKFLRINLPPGGPPTAVAFADNATSIVVA 156 (440)
Q Consensus 80 ~~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~---~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~ 156 (440)
|...+ ++..|.+.|+.++|.|-...|++|+.||++++|+++ .........+..+..|.++|.|+++.+++.
T Consensus 284 w~ik~-tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~----- 357 (577)
T KOG0642|consen 284 WNIKF-TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE----- 357 (577)
T ss_pred cceee-eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce-----
Confidence 44444 788999999999999999999999999999999993 333344555667788999999998877655
Q ss_pred eecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeC
Q 013578 157 THNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHG 236 (440)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~ 236 (440)
.+++|+-||+|+.|++
T Consensus 358 ----------------------------------------------------------------~~ysgg~Dg~I~~w~~ 373 (577)
T KOG0642|consen 358 ----------------------------------------------------------------HCYSGGIDGTIRCWNL 373 (577)
T ss_pred ----------------------------------------------------------------EEEeeccCceeeeecc
Confidence 6778888888999965
Q ss_pred CCC----------ceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEE
Q 013578 237 KTG----------KLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLC 306 (440)
Q Consensus 237 ~~~----------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 306 (440)
... .....+.+|...+..+++|+....|++++.||++++|+...... +...-....+--++++
T Consensus 374 p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-------~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 374 PPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-------CTFGEPKEHGYPLSVD 446 (577)
T ss_pred CCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-------cccCCccccCCcceEe
Confidence 421 23356678999999999999999999999999999999754431 1111111223345666
Q ss_pred EcCCCC-EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcC
Q 013578 307 FAPNSE-QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVE 384 (440)
Q Consensus 307 ~~p~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~ 384 (440)
+-.... +.++...-+.-.++++.....+ ..+.............+..+.+.|.+.+..++. ++.|+++|..
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~-------~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEVVSDL-------LIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred eccchhHhhhhhcccccccchhhhhhhhe-------eeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 643321 2222222223333343332221 111111111222234467788999998888765 8999999999
Q ss_pred CccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 385 TGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 385 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
+++++... .+|...++++++.|++ .+|++++.||.+++|++....|
T Consensus 520 ~~~~l~s~-~a~~~svtslai~~ng--------~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 520 TGKILHSM-VAHKDSVTSLAIDPNG--------PYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred ccccchhe-eeccceecceeecCCC--------ceEEeecCCceeehhhccchhe
Confidence 99999998 5899999999999999 8999999999999999976543
No 158
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=7.9e-21 Score=152.47 Aligned_cols=196 Identities=17% Similarity=0.246 Sum_probs=136.4
Q ss_pred CEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccC
Q 013578 104 KCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQS 183 (440)
Q Consensus 104 ~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (440)
+.+|++-..|.|++||..++. .+..+..+...+..+.|..+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~-----~l~~fk~~~~~~N~vrf~~~d--------------------------------- 82 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ-----LLEEFKGPPATTNGVRFISCD--------------------------------- 82 (376)
T ss_pred eeEEEEecCCeEEEEeccchh-----hhheecCCCCcccceEEecCC---------------------------------
Confidence 578888899999999998854 334444555556666665321
Q ss_pred CCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeee--CCC-CcccEEEecCC
Q 013578 184 KLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD--TNQ-LKNNMAAISPN 260 (440)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~-~~v~~~~~s~~ 260 (440)
+...+.+|+.||+|++||++.......+. .+. .+..|++.+-.
T Consensus 83 ----------------------------------s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck 128 (376)
T KOG1188|consen 83 ----------------------------------SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCK 128 (376)
T ss_pred ----------------------------------CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCc
Confidence 11268999999999999999876554443 332 35667777778
Q ss_pred CCeEEEEec----CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCC-CCEEEEEeCCCcEEEEecCcccccc
Q 013578 261 GRFLAAAAF----TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPN-SEQIITASKDGTLRVWNINVRYHLD 335 (440)
Q Consensus 261 ~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~-~~~l~s~~~dg~i~iwd~~~~~~~~ 335 (440)
++.+++|+. +-.+.+||+|..+.. ...-...|.+.|+++.|+|+ -++|++||.||.|.+||++....-
T Consensus 129 ~~ii~~GtE~~~s~A~v~lwDvR~~qq~------l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee- 201 (376)
T KOG1188|consen 129 KNIIACGTELTRSDASVVLWDVRSEQQL------LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE- 201 (376)
T ss_pred CCeEEeccccccCceEEEEEEeccccch------hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch-
Confidence 889998864 667999999877621 12224569999999999995 468999999999999999854211
Q ss_pred CCCCccccccccccCCCCCeeeeeeEEeCCCC--CEEEEecCCEEEEEEcCCccc
Q 013578 336 EDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG--KILAATHGSTLQWLSVETGKV 388 (440)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~~~~~i~i~d~~~~~~ 388 (440)
-++...-.+...|.++.|..++ +++.....+...+|+++.+..
T Consensus 202 ----------DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 202 ----------DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred ----------hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence 1122222344557778887777 655556677777777766543
No 159
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=4.2e-20 Score=141.49 Aligned_cols=245 Identities=15% Similarity=0.134 Sum_probs=173.5
Q ss_pred CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCC-----CcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceE
Q 013578 91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDAS-----SKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSL 165 (440)
Q Consensus 91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~-----~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~ 165 (440)
...|.+-+++|.+++|+.|+.+|+|.+..+.... .+.....-....|+++++.++|..+
T Consensus 10 ~~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~---------------- 73 (325)
T KOG0649|consen 10 YNTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD---------------- 73 (325)
T ss_pred HHHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh----------------
Confidence 3457778999999999999999999999986421 1111223334677888888888732
Q ss_pred EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC------
Q 013578 166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG------ 239 (440)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~------ 239 (440)
+|++|+. |.|+-|..+..
T Consensus 74 -------------------------------------------------------~Lls~gd-G~V~gw~W~E~~es~~~ 97 (325)
T KOG0649|consen 74 -------------------------------------------------------FLLSGGD-GLVYGWEWNEEEESLAT 97 (325)
T ss_pred -------------------------------------------------------heeeccC-ceEEEeeehhhhhhccc
Confidence 3444433 55555543321
Q ss_pred ---------ceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCC
Q 013578 240 ---------KLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPN 310 (440)
Q Consensus 240 ---------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~ 310 (440)
..... ..-..|+++...|..+-++.++.|+.++-||+..++ ....++||++.|.++.--..
T Consensus 98 K~lwe~~~P~~~~~--~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~--------i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 98 KRLWEVKIPMQVDA--VEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR--------IQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred hhhhhhcCccccCc--ccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE--------EEEEEcCCcceeeeeeeccc
Confidence 11111 123457889999988888888899999999998876 77889999999999988555
Q ss_pred CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchh
Q 013578 311 SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLD 390 (440)
Q Consensus 311 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~ 390 (440)
...+++|++||++|+||.++.++..... ....+..........| .+..-+..+|++|.+..+.+|++++.++..
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie----~yk~~~~lRp~~g~wi--gala~~edWlvCGgGp~lslwhLrsse~t~ 241 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIE----PYKNPNLLRPDWGKWI--GALAVNEDWLVCGGGPKLSLWHLRSSESTC 241 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEec----cccChhhcCcccCcee--EEEeccCceEEecCCCceeEEeccCCCceE
Confidence 5679999999999999999887653211 1111111111222334 445566779999999999999999999888
Q ss_pred hhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 391 TAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 391 ~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
.+. -..+|..+.|..| .++++|..+.|.-|.+.
T Consensus 242 vfp--ipa~v~~v~F~~d----------~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 242 VFP--IPARVHLVDFVDD----------CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred EEe--cccceeEeeeecc----------eEEEeccccceeeeeec
Confidence 774 6678999999886 57777777778877764
No 160
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=3.2e-20 Score=154.02 Aligned_cols=189 Identities=21% Similarity=0.259 Sum_probs=147.6
Q ss_pred EEEEeeCCceEEEEeCCCCce---eee------------------eeCCCCcccEEEecCC-CCeEEEEecCCCEEEEEe
Q 013578 221 IIASCSEGTDISIWHGKTGKL---LGN------------------VDTNQLKNNMAAISPN-GRFLAAAAFTADVKVWEI 278 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~---~~~------------------~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~ 278 (440)
+++.|+.|..|.|||+.-... ... ..+|...|..+.|+.+ .+.||+|+.|.+|.+||+
T Consensus 194 yvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~ 273 (463)
T KOG0270|consen 194 YVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDV 273 (463)
T ss_pred eEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEc
Confidence 999999999999999853211 011 1246666777888774 578999999999999999
Q ss_pred EecCCCceeeeeeeeeeeccccceEEEEEcCC-CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeee
Q 013578 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPN-SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQ 357 (440)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (440)
..++ +...+..|...|.+++|+|. ..+|++|+.|++|.+.|.+...+. .... .-...
T Consensus 274 ~~g~--------p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s---~~~w-----------k~~g~ 331 (463)
T KOG0270|consen 274 DTGK--------PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS---GKEW-----------KFDGE 331 (463)
T ss_pred CCCC--------cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc---CceE-----------Eeccc
Confidence 8887 67778789999999999995 567899999999999999842211 1111 11234
Q ss_pred eeeEEeCCCCC--EEEEecCCEEEEEEcCCc-cchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578 358 YDRLSLSSDGK--ILAATHGSTLQWLSVETG-KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA 434 (440)
Q Consensus 358 v~~~~~s~~g~--~l~~~~~~~i~i~d~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~ 434 (440)
|-.++|.|... ++++..||.|+-+|++.. +++.++ ++|.++|.++++++..+ .+|+|++.|+.|++|++
T Consensus 332 VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~-~AHd~~ISgl~~n~~~p-------~~l~t~s~d~~Vklw~~ 403 (463)
T KOG0270|consen 332 VEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTL-KAHDDEISGLSVNIQTP-------GLLSTASTDKVVKLWKF 403 (463)
T ss_pred eEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEE-EeccCCcceEEecCCCC-------cceeeccccceEEEEee
Confidence 77899999866 344456899999999876 778887 69999999999998764 68999999999999999
Q ss_pred CCCCC
Q 013578 435 PSLES 439 (440)
Q Consensus 435 ~~~~~ 439 (440)
..-.+
T Consensus 404 ~~~~~ 408 (463)
T KOG0270|consen 404 DVDSP 408 (463)
T ss_pred cCCCC
Confidence 76544
No 161
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=3e-21 Score=178.17 Aligned_cols=190 Identities=16% Similarity=0.303 Sum_probs=145.2
Q ss_pred EEEEeeCCceEEEEeCCC---C---ceeeeeeCCCCcccEEEecCCC-CeEEEEecCCCEEEEEeEecCCCceeeeeeee
Q 013578 221 IIASCSEGTDISIWHGKT---G---KLLGNVDTNQLKNNMAAISPNG-RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM 293 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~---~---~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 293 (440)
+++.|.+||.|.+||... + ..+.+...|.+.|..+.|++.. ++||+|+.||.|.|||+..... -.
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~t--------P~ 153 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPET--------PF 153 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCC--------CC
Confidence 799999999999999764 2 3456778899999999999965 5999999999999999976441 11
Q ss_pred ee--eccccceEEEEEcCC-CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-E
Q 013578 294 QL--KGHKSAVTWLCFAPN-SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-I 369 (440)
Q Consensus 294 ~~--~~h~~~v~~~~~~p~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~ 369 (440)
.. ....+.|.+++|+.. ...|++++.+|.+.|||++..+.+-. . ........+..++|+|++. .
T Consensus 154 ~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~---------l---s~~~~~~~~S~l~WhP~~aTq 221 (1049)
T KOG0307|consen 154 TPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIK---------L---SDTPGRMHCSVLAWHPDHATQ 221 (1049)
T ss_pred CCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccc---------c---ccCCCccceeeeeeCCCCcee
Confidence 11 224577999999764 34688999999999999996543211 1 1112225577899999965 3
Q ss_pred EEE--ecC--CEEEEEEcCCcc-chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 370 LAA--THG--STLQWLSVETGK-VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 370 l~~--~~~--~~i~i~d~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
|++ .+| -.|.+||++... .++.+ .+|...|.++.|++.++ ++|+|++.|+.|.+|+.+++|
T Consensus 222 l~~As~dd~~PviqlWDlR~assP~k~~-~~H~~GilslsWc~~D~-------~lllSsgkD~~ii~wN~~tgE 287 (1049)
T KOG0307|consen 222 LLVASGDDSAPVIQLWDLRFASSPLKIL-EGHQRGILSLSWCPQDP-------RLLLSSGKDNRIICWNPNTGE 287 (1049)
T ss_pred eeeecCCCCCceeEeecccccCCchhhh-cccccceeeeccCCCCc-------hhhhcccCCCCeeEecCCCce
Confidence 333 333 489999987655 45555 69999999999999763 799999999999999999976
No 162
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.86 E-value=2.7e-19 Score=140.64 Aligned_cols=262 Identities=16% Similarity=0.276 Sum_probs=185.2
Q ss_pred ccccccccCcceeEEEEcc--C-CCEEEEee----CCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEE
Q 013578 83 DVNTLKGHGDSVTGLCFSS--D-GKCLATAC----ADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVV 155 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~--d-g~~l~t~s----~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~ 155 (440)
++..+..| -.+.++.|+. + +.+||.|+ ..+.|.|-.++....+. .....+.|.-+++.+.|.|+....
T Consensus 37 eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~--~~~a~fd~~YP~tK~~wiPd~~g~-- 111 (364)
T KOG0290|consen 37 EIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGEL--VEDANFDHPYPVTKLMWIPDSKGV-- 111 (364)
T ss_pred eEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCce--eccCCCCCCCCccceEecCCcccc--
Confidence 35556655 4688999984 3 45788887 34678887776443331 223346788899999999985411
Q ss_pred EeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEe
Q 013578 156 ATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWH 235 (440)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd 235 (440)
.|+ +|++++. .+|+|.
T Consensus 112 -----------------------------------------------------------~pd---lLATs~D--~LRlWr 127 (364)
T KOG0290|consen 112 -----------------------------------------------------------YPD---LLATSSD--FLRLWR 127 (364)
T ss_pred -----------------------------------------------------------Ccc---hhhcccC--eEEEEe
Confidence 121 5555543 399998
Q ss_pred CCCCce----eeee-----eCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEE
Q 013578 236 GKTGKL----LGNV-----DTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWL 305 (440)
Q Consensus 236 ~~~~~~----~~~~-----~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 305 (440)
+...+. ...+ ..+..+++++.|+. +.+++.+.+-|-++.|||+..+..+. ...++-+|...|..+
T Consensus 128 i~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~-----vkTQLIAHDKEV~DI 202 (364)
T KOG0290|consen 128 IGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGT-----VKTQLIAHDKEVYDI 202 (364)
T ss_pred ccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccc-----eeeEEEecCcceeEE
Confidence 763211 1111 23456788888886 67899999999999999998764322 244577899999999
Q ss_pred EEcCCCC-EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEE-e-cCCEEEEE
Q 013578 306 CFAPNSE-QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAA-T-HGSTLQWL 381 (440)
Q Consensus 306 ~~~p~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~-~-~~~~i~i~ 381 (440)
+|...+. .||+.+.||.||+||++..... . -++.......+..+++|++... ++|+ + +...|.|.
T Consensus 203 af~~~s~~~FASvgaDGSvRmFDLR~leHS-------T----IIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iL 271 (364)
T KOG0290|consen 203 AFLKGSRDVFASVGADGSVRMFDLRSLEHS-------T----IIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVIL 271 (364)
T ss_pred EeccCccceEEEecCCCcEEEEEecccccc-------e----EEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEE
Confidence 9998654 6899999999999999954321 1 1222223244567899998765 6665 2 35789999
Q ss_pred EcCCcc-chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 382 SVETGK-VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 382 d~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
|++... .+.++ .+|.+.|+.++|.|... ..|.|+|+|..+.+||+.+.
T Consensus 272 DiR~P~tpva~L-~~H~a~VNgIaWaPhS~-------~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 272 DIRVPCTPVARL-RNHQASVNGIAWAPHSS-------SHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred EecCCCcceehh-hcCcccccceEecCCCC-------ceeeecCCcceEEEEecccc
Confidence 998765 55566 69999999999999863 78999999999999999763
No 163
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=2.1e-19 Score=141.13 Aligned_cols=254 Identities=19% Similarity=0.305 Sum_probs=176.3
Q ss_pred cccccccCcceeEEEEcc-CCCEEEEeeCC-------CcEEEEecCCCCCc----ceee-EEecCCCCCCCceEEEccCC
Q 013578 84 VNTLKGHGDSVTGLCFSS-DGKCLATACAD-------GVIRVHKLDDASSK----SFKF-LRINLPPGGPPTAVAFADNA 150 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~-dg~~l~t~s~d-------g~v~vW~~~~~~~~----~~~~-~~~~~~~~~~v~~v~~~~~~ 150 (440)
-+.|..|.+.|+.++-+| |.+.|+|+-.| -.+.||.+...... ...+ ......+-+.+.++.|.|++
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 456788999999999999 55666766442 23689998754332 0111 11222344578888888877
Q ss_pred CeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCce
Q 013578 151 TSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTD 230 (440)
Q Consensus 151 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 230 (440)
..+++.. |..
T Consensus 136 ~klasm~----------------------------------------------------------------------dn~ 145 (370)
T KOG1007|consen 136 DKLASMD----------------------------------------------------------------------DNN 145 (370)
T ss_pred CeeEEec----------------------------------------------------------------------cCc
Confidence 6554332 445
Q ss_pred EEEEeCCCCce-eeeee-----CCCCcccEEEecC--CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccce
Q 013578 231 ISIWHGKTGKL-LGNVD-----TNQLKNNMAAISP--NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAV 302 (440)
Q Consensus 231 i~vwd~~~~~~-~~~~~-----~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v 302 (440)
|.+|++..+.. +..+. .+....++-+|+| +|+.+++. .|+++..||+++.+. ....-.+|...|
T Consensus 146 i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~-------~~sI~dAHgq~v 217 (370)
T KOG1007|consen 146 IVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKK-------NNSIEDAHGQRV 217 (370)
T ss_pred eEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhh-------hcchhhhhccee
Confidence 77777766544 22221 1344566778988 77887776 589999999987651 223345688889
Q ss_pred EEEEEcCCCC-EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEE-ecCCEEE
Q 013578 303 TWLCFAPNSE-QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAA-THGSTLQ 379 (440)
Q Consensus 303 ~~~~~~p~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~-~~~~~i~ 379 (440)
..+.|+|+.+ +|++|+.||.|+|||.+.. ..++....+|...|.++.|+|.-. ++.+ |+|..|.
T Consensus 218 rdlDfNpnkq~~lvt~gDdgyvriWD~R~t-------------k~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~ 284 (370)
T KOG1007|consen 218 RDLDFNPNKQHILVTCGDDGYVRIWDTRKT-------------KFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVN 284 (370)
T ss_pred eeccCCCCceEEEEEcCCCccEEEEeccCC-------------CccccccCCCceEEEEEEecCccceEEEecCCCceeE
Confidence 9999999876 5789999999999999854 235666778899999999999754 4444 5588888
Q ss_pred EEEcCCcc-----------------------------chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEE
Q 013578 380 WLSVETGK-----------------------------VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVK 430 (440)
Q Consensus 380 i~d~~~~~-----------------------------~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~ 430 (440)
+|...+-. .+.++ ..|++.|.+++|+.-.| -++|+-+.||++.
T Consensus 285 Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty-dehEDSVY~~aWSsadP-------WiFASLSYDGRvi 356 (370)
T KOG1007|consen 285 LSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY-DEHEDSVYALAWSSADP-------WIFASLSYDGRVI 356 (370)
T ss_pred EEeccccccccccccccccccCcchhhHHhcccccccccccc-cccccceEEEeeccCCC-------eeEEEeccCceEE
Confidence 88542210 11233 46899999999998764 6888999999999
Q ss_pred EEeCCC
Q 013578 431 LWLAPS 436 (440)
Q Consensus 431 vw~~~~ 436 (440)
|=+++.
T Consensus 357 Is~V~r 362 (370)
T KOG1007|consen 357 ISSVPR 362 (370)
T ss_pred eecCCh
Confidence 877654
No 164
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=1.5e-20 Score=158.24 Aligned_cols=220 Identities=19% Similarity=0.284 Sum_probs=167.4
Q ss_pred ceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccc
Q 013578 93 SVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEK 172 (440)
Q Consensus 93 ~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 172 (440)
.-.|++......|+++|+..+.|+|||+.... +.+...+|...|+++.+.....
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl-----~hr~lkdh~stvt~v~YN~~De--------------------- 134 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKL-----IHRFLKDHQSTVTYVDYNNTDE--------------------- 134 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHHH-----HhhhccCCcceeEEEEecCCcc---------------------
Confidence 34455554455899999999999999998432 4566667888888888865443
Q ss_pred ccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCC-CCc
Q 013578 173 AISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN-QLK 251 (440)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~ 251 (440)
++++++..|.|.+..+.++.....+... ...
T Consensus 135 ------------------------------------------------yiAsvs~gGdiiih~~~t~~~tt~f~~~sgqs 166 (673)
T KOG4378|consen 135 ------------------------------------------------YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQS 166 (673)
T ss_pred ------------------------------------------------eeEEeccCCcEEEEecccCccccceecCCCCe
Confidence 6777777888888888888777777654 344
Q ss_pred ccEEEecCCCC-eEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCC-CEEEEEeCCCcEEEEecC
Q 013578 252 NNMAAISPNGR-FLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS-EQIITASKDGTLRVWNIN 329 (440)
Q Consensus 252 v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~~~dg~i~iwd~~ 329 (440)
++-+.|++..+ +|.+++.+|.|.+||+.... ....-...|..+...|+|+|.. .+|++.+.|..|.+||++
T Consensus 167 vRll~ys~skr~lL~~asd~G~VtlwDv~g~s-------p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 167 VRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS-------PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred EEEeecccccceeeEeeccCCeEEEEeccCCC-------cccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence 56889999765 45678899999999986544 1233456799999999999954 578899999999999998
Q ss_pred ccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCC
Q 013578 330 VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPK 408 (440)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~ 408 (440)
...... .+ ....+...++|+++|.+|+.|. .|.|..||++..+.......+|...|++++|-|.
T Consensus 240 s~~s~~-------~l--------~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 240 SQASTD-------RL--------TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred cccccc-------ee--------eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence 543221 11 1123467899999999999987 8999999998876554444799999999999886
No 165
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=3.2e-19 Score=141.86 Aligned_cols=275 Identities=19% Similarity=0.225 Sum_probs=186.5
Q ss_pred CCCCCCCCCcccCccc----cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCce
Q 013578 68 HSHGDKDQNKRHHPLD----VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143 (440)
Q Consensus 68 ~~~~~~~~~~~~~~~~----~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~ 143 (440)
.+.+..++.+-+|+.. -+.|.+|..+|.+++||+||+.|+|+|.|..|++||+..+... +.++ ...+|..
T Consensus 38 lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l--~rir----f~spv~~ 111 (405)
T KOG1273|consen 38 LAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPL--KRIR----FDSPVWG 111 (405)
T ss_pred eeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCce--eEEE----ccCccce
Confidence 4566777777777664 4578899999999999999999999999999999999987632 2222 3489999
Q ss_pred EEEccCCCeEEEEeecCCcceEEeecccc-ccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEE
Q 013578 144 VAFADNATSIVVATHNLSGCSLYMYGEEK-AISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTII 222 (440)
Q Consensus 144 v~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 222 (440)
+.|+|.....++++--.....+..++... ......... .........++.+.|+ ++
T Consensus 112 ~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~----------------------dln~sas~~~fdr~g~-yI 168 (405)
T KOG1273|consen 112 AQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDG----------------------DLNSSASHGVFDRRGK-YI 168 (405)
T ss_pred eeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcc----------------------ccccccccccccCCCC-EE
Confidence 99999877666555332222222222111 000000000 0001111224466777 99
Q ss_pred EEeeCCceEEEEeCCCCceeeeeeCCC-CcccEEEecCCCCeEEEEecCCCEEEEEeEecCC-Cceeeeeeeeeeec--c
Q 013578 223 ASCSEGTDISIWHGKTGKLLGNVDTNQ-LKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKD-GLVKAVTSVMQLKG--H 298 (440)
Q Consensus 223 ~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~--h 298 (440)
++|...|.+.++|..+.+++..++... ..|..+.++..|++|+.-+.|..|+.|++..-.. +.-......+.++. .
T Consensus 169 itGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVN 248 (405)
T KOG1273|consen 169 ITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVN 248 (405)
T ss_pred EEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHh
Confidence 999999999999999999998887655 6788999999999999999999999999862111 01011111122211 1
Q ss_pred ccceEEEEEcCCCCEEEEEe-CCCcEEEEecCccccccCCCCccccccccccCCCCCe-eeeeeEEeCCCCCEEEEecCC
Q 013578 299 KSAVTWLCFAPNSEQIITAS-KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGAT-LQYDRLSLSSDGKILAATHGS 376 (440)
Q Consensus 299 ~~~v~~~~~~p~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~~ 376 (440)
+..-.+++|+.+|.+++.++ .-..++||.-..+..++ .+ .|.. .....+.|.|-...+++-..|
T Consensus 249 k~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVK-------IL-------hG~kgE~l~DV~whp~rp~i~si~sg 314 (405)
T KOG1273|consen 249 KLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVK-------IL-------HGTKGEELLDVNWHPVRPIIASIASG 314 (405)
T ss_pred hhhhhheeecCCccEEEeccccceeEEEEecCCcceee-------ee-------cCCchhheeecccccceeeeeeccCC
Confidence 22345788999999988776 34579999988665432 11 1111 234568899999999998899
Q ss_pred EEEEEEcCC
Q 013578 377 TLQWLSVET 385 (440)
Q Consensus 377 ~i~i~d~~~ 385 (440)
.+++|....
T Consensus 315 ~v~iw~~~~ 323 (405)
T KOG1273|consen 315 VVYIWAVVQ 323 (405)
T ss_pred ceEEEEeec
Confidence 999998654
No 166
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.84 E-value=2.6e-17 Score=133.91 Aligned_cols=238 Identities=20% Similarity=0.273 Sum_probs=161.5
Q ss_pred CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecc
Q 013578 91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGE 170 (440)
Q Consensus 91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~ 170 (440)
...+..+.|+.|...|..|+.|| .++++.+.... + ......+..|..+-|+ ...++.++.+ ....+.+.+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k----~-~~~~~~~~~IvEmLFS--SSLvaiV~~~-qpr~Lkv~~~ 75 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK----C-FSKDTEGVSIVEMLFS--SSLVAIVSIK-QPRKLKVVHF 75 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHH----h-hcccCCCeEEEEeecc--cceeEEEecC-CCceEEEEEc
Confidence 45677888999999999999998 68888775432 1 1111112233444444 4455555553 2344555444
Q ss_pred ccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCC--
Q 013578 171 EKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN-- 248 (440)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-- 248 (440)
.+. ..++....+..+....-++..|+.+-.+. |+|||+++.+.+.++..-
T Consensus 76 Kk~---------------------------~~ICe~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~ 127 (391)
T KOG2110|consen 76 KKK---------------------------TTICEIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPP 127 (391)
T ss_pred ccC---------------------------ceEEEEecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCC
Confidence 332 12233332222222222333677777776 999999999999888643
Q ss_pred -CCcccEEEecCCCCeEEEEe--cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCc-EE
Q 013578 249 -QLKNNMAAISPNGRFLAAAA--FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGT-LR 324 (440)
Q Consensus 249 -~~~v~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~-i~ 324 (440)
...+.++.+++.+.+++.-+ ..|.|.+||...-+ .+..+..|++.+.+++|+++|.+|||+|..|+ ||
T Consensus 128 n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~--------~v~~I~aH~~~lAalafs~~G~llATASeKGTVIR 199 (391)
T KOG2110|consen 128 NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ--------PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIR 199 (391)
T ss_pred CccceEeeccCCCCceEEecCCCCCceEEEEEcccce--------eeeEEEecCCceeEEEECCCCCEEEEeccCceEEE
Confidence 33344555555666888654 46899999986554 77888899999999999999999999999987 79
Q ss_pred EEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCC
Q 013578 325 VWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVET 385 (440)
Q Consensus 325 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~ 385 (440)
++.+..+..+.+..+.. ....|.+++|+|++++|++.+ .++|++|.++.
T Consensus 200 Vf~v~~G~kl~eFRRG~------------~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 200 VFSVPEGQKLYEFRRGT------------YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEcCCccEeeeeeCCc------------eeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 99999887664432222 245688999999999999865 68999998753
No 167
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=1.9e-19 Score=147.33 Aligned_cols=215 Identities=15% Similarity=0.163 Sum_probs=157.0
Q ss_pred cccccccCcceeEEEEcc-CCCEEEEeeCCCcEEEEecCCCCCc--ceeeEEecCCCCCCCceEEEccCCCeEEEEeecC
Q 013578 84 VNTLKGHGDSVTGLCFSS-DGKCLATACADGVIRVHKLDDASSK--SFKFLRINLPPGGPPTAVAFADNATSIVVATHNL 160 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~--~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~ 160 (440)
.-.+.||+++|..++|+| +...|||||.|.+|.||++..+... .........+|...|..++|+|...
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~--------- 144 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP--------- 144 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch---------
Confidence 345779999999999999 6678999999999999999765322 1122344556777777777776432
Q ss_pred CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc
Q 013578 161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK 240 (440)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 240 (440)
+.|++++.|.+|.+||+.+++
T Consensus 145 -----------------------------------------------------------NVLlsag~Dn~v~iWnv~tge 165 (472)
T KOG0303|consen 145 -----------------------------------------------------------NVLLSAGSDNTVSIWNVGTGE 165 (472)
T ss_pred -----------------------------------------------------------hhHhhccCCceEEEEeccCCc
Confidence 278899999999999999999
Q ss_pred eeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccc-eEEEEEcCCCCEEEEEe-
Q 013578 241 LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSA-VTWLCFAPNSEQIITAS- 318 (440)
Q Consensus 241 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~p~~~~l~s~~- 318 (440)
.+.++. |...|.++.|+.||.+|++.+.|.+|+|||.+.+. .+..-.+|.+. -..+.|-.+|..+-||-
T Consensus 166 ali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~--------~v~e~~~heG~k~~Raifl~~g~i~tTGfs 236 (472)
T KOG0303|consen 166 ALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT--------VVSEGVAHEGAKPARAIFLASGKIFTTGFS 236 (472)
T ss_pred eeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCc--------EeeecccccCCCcceeEEeccCceeeeccc
Confidence 988887 88999999999999999999999999999998776 55555667653 34456777888444442
Q ss_pred --CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-e-cCCEEEEEEcCCcc
Q 013578 319 --KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-T-HGSTLQWLSVETGK 387 (440)
Q Consensus 319 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~-~~~~i~i~d~~~~~ 387 (440)
.+..+-+||....... ..... +. ....|.---|.+|..++.. | .|+.|+.|.+....
T Consensus 237 r~seRq~aLwdp~nl~eP----~~~~e----lD----tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 237 RMSERQIALWDPNNLEEP----IALQE----LD----TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cccccceeccCcccccCc----ceeEE----ec----cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 5778999998754221 01110 11 1122444556788776654 3 48999999987655
No 168
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=3.1e-19 Score=150.05 Aligned_cols=315 Identities=13% Similarity=0.157 Sum_probs=209.2
Q ss_pred cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccC--CCeEEEEeecCC
Q 013578 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADN--ATSIVVATHNLS 161 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~--~~~l~~~~~~~~ 161 (440)
...|.+|.+.|+.|.|+..|..|++||.|..|.+||+..... .+....+|...|..-.|.|. .+.+++++.++.
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~----~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP----KLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCc----ccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 356889999999999999999999999999999999987653 45566678788888888874 456777776643
Q ss_pred cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578 162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL 241 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 241 (440)
...-.+........ ......+.++..+ ...-|+....|.+++.|+.+.-+|++++..
T Consensus 211 vr~s~i~~t~~~e~-------------t~rl~~h~g~vhk----------lav~p~sp~~f~S~geD~~v~~~Dlr~~~p 267 (559)
T KOG1334|consen 211 VRVSEILETGYVEN-------------TKRLAPHEGPVHK----------LAVEPDSPKPFLSCGEDAVVFHIDLRQDVP 267 (559)
T ss_pred eeeeeeccccceec-------------ceecccccCccce----------eeecCCCCCcccccccccceeeeeeccCCc
Confidence 33222222211110 0001111111111 112455555799999999999999988755
Q ss_pred eeeee---CCCC---cccEEEecCCC-CeEEEEecCCCEEEEEeEecCCCce----eeeeeeeeeeccccceEEEEEcCC
Q 013578 242 LGNVD---TNQL---KNNMAAISPNG-RFLAAAAFTADVKVWEIVYSKDGLV----KAVTSVMQLKGHKSAVTWLCFAPN 310 (440)
Q Consensus 242 ~~~~~---~~~~---~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~~~~~h~~~v~~~~~~p~ 310 (440)
...+. .+.. ....++.+|.. ..+++|+.|-.+++||.+.-..... ..+.+-+-.....-.|++++|+.+
T Consensus 268 a~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~ 347 (559)
T KOG1334|consen 268 AEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHD 347 (559)
T ss_pred cceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCC
Confidence 43332 2222 45677888855 5899999999999999875432111 111111111122346899999977
Q ss_pred CCEEEEEeCCCcEEEEecCccccccCCCCccc---cccccccCCCCCeeeeeeEEe-CCCCCEEEEecC-CEEEEEEcCC
Q 013578 311 SEQIITASKDGTLRVWNINVRYHLDEDPKTLK---VLPIPLLDSNGATLQYDRLSL-SSDGKILAATHG-STLQWLSVET 385 (440)
Q Consensus 311 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~-s~~g~~l~~~~~-~~i~i~d~~~ 385 (440)
+.-|.+.-.|-.|+++.-..+.- ..+.... .+....+........|..+.| .|...|+++|+| |.|.||+-.+
T Consensus 348 ~sElLaSYnDe~IYLF~~~~~~G--~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t 425 (559)
T KOG1334|consen 348 GSELLASYNDEDIYLFNKSMGDG--SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT 425 (559)
T ss_pred ccceeeeecccceEEeccccccC--CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecch
Confidence 76666666788899994432211 1111111 111112333333444666765 688899999998 9999999999
Q ss_pred ccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 386 GKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 386 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
++.+..++ +-..-|+|+.-+|-. .+||++|-|.-|+||...+
T Consensus 426 ~eii~~Me-gDr~VVNCLEpHP~~--------PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 426 GEIIRFME-GDRHVVNCLEPHPHL--------PVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred hHHHHHhh-cccceEeccCCCCCC--------chhhccCCccceeeecCCc
Confidence 99999885 555589999999998 7999999999999998743
No 169
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.83 E-value=6.5e-21 Score=169.96 Aligned_cols=246 Identities=19% Similarity=0.273 Sum_probs=187.8
Q ss_pred ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
-++.|.||.++|+|+.|...|.+++||+.|..++||..++.. ++....+|.+.++.++.+.+..
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~-----~lAs~rGhs~ditdlavs~~n~----------- 245 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR-----CLASCRGHSGDITDLAVSSNNT----------- 245 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchh-----hhccCCCCccccchhccchhhh-----------
Confidence 356788999999999999999999999999999999987664 4556678888888887654432
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL 242 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 242 (440)
++++++.|..|++|.+.++.++
T Consensus 246 ----------------------------------------------------------~iaaaS~D~vIrvWrl~~~~pv 267 (1113)
T KOG0644|consen 246 ----------------------------------------------------------MIAAASNDKVIRVWRLPDGAPV 267 (1113)
T ss_pred ----------------------------------------------------------hhhhcccCceEEEEecCCCchH
Confidence 6888899999999999999999
Q ss_pred eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCc
Q 013578 243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGT 322 (440)
Q Consensus 243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~ 322 (440)
..+.+|.+.|++++|+|-. +.+.||++++||.+...... .. ....+. ....+-++.|..++..++|++.|+.
T Consensus 268 svLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y--~p-rp~~~~-~~~~~~s~~~~~~~~~f~Tgs~d~e 339 (1113)
T KOG0644|consen 268 SVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIY--VP-RPLKFT-EKDLVDSILFENNGDRFLTGSRDGE 339 (1113)
T ss_pred HHHhccccceeeeccCccc----cCCCCCceEecccccccccc--CC-CCCCcc-cccceeeeeccccccccccccCCcc
Confidence 9999999999999999964 77889999999987322000 00 001111 2355777888888899999999999
Q ss_pred EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC-CEEEEe-cCCEEEEEEcCCccchhhhhccccCCe
Q 013578 323 LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG-KILAAT-HGSTLQWLSVETGKVLDTAEKAHEGEI 400 (440)
Q Consensus 323 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~-~~~~i~i~d~~~~~~~~~~~~~h~~~v 400 (440)
-..|.+...... ...+.-+.++.+- .+.+++ .+-.+.+|++.+|+.++.+ .+|...+
T Consensus 340 a~n~e~~~l~~~--------------------~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l-~ghsd~~ 398 (1113)
T KOG0644|consen 340 ARNHEFEQLAWR--------------------SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNL-MGHSDEV 398 (1113)
T ss_pred cccchhhHhhhh--------------------ccceEEEeccccccccceeeeeeeEeeeeecccchhhhhh-cccccce
Confidence 999987632110 0001112222222 233333 3678899999999999998 6999999
Q ss_pred EEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 401 TCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 401 ~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
..+.++|-++ +...+++.||...|||+-.+.
T Consensus 399 yvLd~Hpfn~-------ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 399 YVLDVHPFNP-------RIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred eeeeecCCCc-------HhhhhccCCCceEeeecccCC
Confidence 9999999874 677899999999999997664
No 170
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.83 E-value=1.7e-18 Score=138.24 Aligned_cols=266 Identities=16% Similarity=0.225 Sum_probs=172.9
Q ss_pred CCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCC
Q 013578 139 GPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADG 218 (440)
Q Consensus 139 ~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (440)
.-...+.|+|||.-|++.+.+ ..+.+|+................ .....+ +......+.........-...|+.
T Consensus 50 nf~kgckWSPDGSciL~~sed---n~l~~~nlP~dlys~~~~~~~~~-~~~~~~--r~~eg~tvydy~wYs~M~s~qP~t 123 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSED---NCLNCWNLPFDLYSKKADGPLNF-SKHLSY--RYQEGETVYDYCWYSRMKSDQPST 123 (406)
T ss_pred hhhccceeCCCCceEEeeccc---CeeeEEecChhhcccCCCCcccc-ccceeE--EeccCCEEEEEEeeeccccCCCcc
Confidence 345578999999999999887 45555554333222211110000 000000 111111112222222222334455
Q ss_pred CeEEEEeeCCceEEEEeCCCCceeeeeeC--CCC---cccEEEecCCCCeEEEEecCCCEEEEEe-EecCCCceeeeeee
Q 013578 219 STIIASCSEGTDISIWHGKTGKLLGNVDT--NQL---KNNMAAISPNGRFLAAAAFTADVKVWEI-VYSKDGLVKAVTSV 292 (440)
Q Consensus 219 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~~~---~v~~~~~s~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~ 292 (440)
. ++++.+.+.-|++||.-+|+....+.. |.. ...+++|+|||..|++|. ...|++||+ +.+.+...... ..
T Consensus 124 ~-l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t-~~ 200 (406)
T KOG2919|consen 124 N-LFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTT-VT 200 (406)
T ss_pred c-eeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhh-hh
Confidence 4 888999999999999999988766643 222 345799999999998875 778999998 43332111000 01
Q ss_pred eeeeccccceEEEEEcCC-CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE
Q 013578 293 MQLKGHKSAVTWLCFAPN-SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA 371 (440)
Q Consensus 293 ~~~~~h~~~v~~~~~~p~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 371 (440)
..-.+..+-|.+++|+|- ...++.++.-.++-||.-..+.. .....+|...|+.+.|.++|..|.
T Consensus 201 ~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p--------------l~llggh~gGvThL~~~edGn~lf 266 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP--------------LQLLGGHGGGVTHLQWCEDGNKLF 266 (406)
T ss_pred cccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc--------------eeeecccCCCeeeEEeccCcCeec
Confidence 112234677899999994 45899999888888887654432 233447888899999999999999
Q ss_pred Eec--CCEEEEEEcCC-ccchhhhhccccC-CeEEEEe--cCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 372 ATH--GSTLQWLSVET-GKVLDTAEKAHEG-EITCMAW--APKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 372 ~~~--~~~i~i~d~~~-~~~~~~~~~~h~~-~v~~v~~--~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
+|. +..|..||++. ..++..+. .|.+ .=..|-| .|++ ++|++|+.||.|++||+..
T Consensus 267 sGaRk~dkIl~WDiR~~~~pv~~L~-rhv~~TNQRI~FDld~~~--------~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 267 SGARKDDKILCWDIRYSRDPVYALE-RHVGDTNQRILFDLDPKG--------EILASGDTDGSVRVWDLKD 328 (406)
T ss_pred ccccCCCeEEEEeehhccchhhhhh-hhccCccceEEEecCCCC--------ceeeccCCCccEEEEecCC
Confidence 987 78999999976 45677774 6665 3344544 4666 8999999999999999987
No 171
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.83 E-value=5.1e-19 Score=150.52 Aligned_cols=173 Identities=16% Similarity=0.271 Sum_probs=139.5
Q ss_pred cccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeee
Q 013578 212 TYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTS 291 (440)
Q Consensus 212 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 291 (440)
.-+++||. -|++.++||.|++|. ++|....++.....+|.|++|.|+.+.++.+. .+.+.|=.+.... .
T Consensus 110 gRW~~dGt-gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~--------k 178 (737)
T KOG1524|consen 110 GRWSPDGA-GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANS--------K 178 (737)
T ss_pred cccCCCCc-eeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeeccccc--------c
Confidence 34578888 889999999999998 45655555656677899999999887666553 4667776654333 5
Q ss_pred eeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE
Q 013578 292 VMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA 371 (440)
Q Consensus 292 ~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 371 (440)
+...++|.+-|.++.|+|..+.+++|++|-..++||-... +++....|..+|++++|.|+ +.++
T Consensus 179 ~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~---------------~Lf~S~~~ey~ITSva~npd-~~~~ 242 (737)
T KOG1524|consen 179 IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA---------------NLFTSAAEEYAITSVAFNPE-KDYL 242 (737)
T ss_pred eeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc---------------ccccCChhccceeeeeeccc-ccee
Confidence 6778999999999999999999999999999999998643 34556678888999999999 7777
Q ss_pred EecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEE
Q 013578 372 ATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKL 431 (440)
Q Consensus 372 ~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~v 431 (440)
.++-+.++ +.+...+.|..++|++|| .+++.|...|.+.+
T Consensus 243 v~S~nt~R------------~~~p~~GSifnlsWS~DG--------TQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 243 LWSYNTAR------------FSSPRVGSIFNLSWSADG--------TQATCGTSTGQLIV 282 (737)
T ss_pred eeeeeeee------------ecCCCccceEEEEEcCCC--------ceeeccccCceEEE
Confidence 77766666 345678899999999999 89999998888765
No 172
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=6.5e-19 Score=144.26 Aligned_cols=267 Identities=14% Similarity=0.142 Sum_probs=187.6
Q ss_pred CccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcc--eeeEEecCCCCCCCceEEEccCCCeEEEEe
Q 013578 80 HPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKS--FKFLRINLPPGGPPTAVAFADNATSIVVAT 157 (440)
Q Consensus 80 ~~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~ 157 (440)
.+.+.+-+.+|.+.|+++.||.++++|++|+.|..++||+++..-... ........+|...|.+++|....+
T Consensus 45 R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~------ 118 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR------ 118 (609)
T ss_pred cchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe------
Confidence 456677889999999999999999999999999999999987432111 111222334556778888754322
Q ss_pred ecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCC
Q 013578 158 HNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK 237 (440)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~ 237 (440)
.+++|..+++|.+-|++
T Consensus 119 ---------------------------------------------------------------~~~SG~~~~~VI~HDiE 135 (609)
T KOG4227|consen 119 ---------------------------------------------------------------FLYSGERWGTVIKHDIE 135 (609)
T ss_pred ---------------------------------------------------------------eEecCCCcceeEeeecc
Confidence 78899999999999999
Q ss_pred CCceeeeeeC--CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCC-CEE
Q 013578 238 TGKLLGNVDT--NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS-EQI 314 (440)
Q Consensus 238 ~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l 314 (440)
+.+.+..+.. ..+.|..+..+|..+.|++.+.++.|.+||.+..... . ....+.........+.|+|.. .+|
T Consensus 136 t~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~----~-~~~~~AN~~~~F~t~~F~P~~P~Li 210 (609)
T KOG4227|consen 136 TKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNP----I-SLVLPANSGKNFYTAEFHPETPALI 210 (609)
T ss_pred cceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCC----C-ceeeecCCCccceeeeecCCCceeE
Confidence 9988776643 3457899999999999999999999999999866521 1 111222234556788999965 467
Q ss_pred EEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhh
Q 013578 315 ITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAE 393 (440)
Q Consensus 315 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~ 393 (440)
++.+..+-+-+||++.....-..... .............+.|+|+|..+.+-. ...-.+||+.+.++..- +
T Consensus 211 ~~~~~~~G~~~~D~R~~~~~~~~~~~-------~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~-k 282 (609)
T KOG4227|consen 211 LVNSETGGPNVFDRRMQARPVYQRSM-------FKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVL-K 282 (609)
T ss_pred EeccccCCCCceeeccccchHHhhhc-------cccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeE-e
Confidence 88888899999999854321100000 001111122345688999999777654 45556778877554321 1
Q ss_pred cccc-------CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 394 KAHE-------GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 394 ~~h~-------~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
..|. ..+.+++|..| .-++||+.+-.|.+|.++..
T Consensus 283 ~D~N~~GY~N~~T~KS~~F~~D---------~~v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 283 SDHNPNGYCNIKTIKSMTFIDD---------YTVATGSDHWGIHIWKLPRA 324 (609)
T ss_pred ccCCCCcceeeeeeeeeeeecc---------eeeeccCcccceEEEecCCC
Confidence 2233 25778899888 56999999999999999753
No 173
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.2e-18 Score=144.12 Aligned_cols=200 Identities=18% Similarity=0.251 Sum_probs=151.9
Q ss_pred cccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeee
Q 013578 210 SATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAV 289 (440)
Q Consensus 210 ~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 289 (440)
..+.+.++|. .+++++.||++|+|+..+...+.....|...|.++.|+|||++|++-+.| ..+||+.+.+.
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~------- 218 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA------- 218 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc-------
Confidence 3455677888 99999999999999988887777777888999999999999999999999 99999998774
Q ss_pred eeeeeee--ccccceEEEEEcCCC---CE--EEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEE
Q 013578 290 TSVMQLK--GHKSAVTWLCFAPNS---EQ--IITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS 362 (440)
Q Consensus 290 ~~~~~~~--~h~~~v~~~~~~p~~---~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 362 (440)
.+.... ........+.|+.++ .+ ++....-+.|+.||+.....- ..+ ...........|++++
T Consensus 219 -~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-------~~l--~~~~~~~~~~siSsl~ 288 (398)
T KOG0771|consen 219 -ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-------NFL--RLRKKIKRFKSISSLA 288 (398)
T ss_pred -hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-------ccc--chhhhhhccCcceeEE
Confidence 222222 223345567787766 22 233334566777777533210 000 0111112223588999
Q ss_pred eCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 363 LSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 363 ~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
.++||+++|.|. +|.|-|++..+.+.++..+..|...|+.+.|+|+. +++++.+.|....|..+.-
T Consensus 289 VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pds--------r~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 289 VSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDS--------RYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCc--------CcccccccCCceeEEEEee
Confidence 999999999987 99999999999999998889999999999999998 8999999999988887754
No 174
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=7.2e-19 Score=146.62 Aligned_cols=256 Identities=14% Similarity=0.129 Sum_probs=178.3
Q ss_pred CCCCCceEEEccCCC-eEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccC
Q 013578 137 PGGPPTAVAFADNAT-SIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGT 215 (440)
Q Consensus 137 ~~~~v~~v~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (440)
+.+.|++++|+|... .+++++..+ ..+-+|+........ .....+ ........++.|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~--G~VG~Wn~~~~~~d~---------d~v~~f----------~~hs~~Vs~l~F~ 243 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKG--GQVGLWNFGTQEKDK---------DGVYLF----------TPHSGPVSGLKFS 243 (498)
T ss_pred cccceEEEEecccCcceEEEEccCC--CcEEEEecCCCCCcc---------CceEEe----------ccCCccccceEec
Confidence 458899999999877 666666654 344445443110000 000011 0111123445567
Q ss_pred CCCCeEEEEeeCCceEEEEeCCCCce--eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeee
Q 013578 216 ADGSTIIASCSEGTDISIWHGKTGKL--LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM 293 (440)
Q Consensus 216 ~~~~~~l~s~~~d~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 293 (440)
|.+...+++.+.||+|++-|++.... +.........+..+.|+.+...++.+..=|...+||++..+. ...
T Consensus 244 P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s-------~~~ 316 (498)
T KOG4328|consen 244 PANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS-------EYE 316 (498)
T ss_pred CCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCc-------cch
Confidence 77777999999999999999987643 334433455567788888888888888888999999998772 355
Q ss_pred eeeccccceEEEEEcCCCC-EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE
Q 013578 294 QLKGHKSAVTWLCFAPNSE-QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA 372 (440)
Q Consensus 294 ~~~~h~~~v~~~~~~p~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 372 (440)
.+.-|...|.+|+++|... +|+|+|.|++.+|||++....... ++.....|...|.++.|||.+--|++
T Consensus 317 ~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s----------p~lst~~HrrsV~sAyFSPs~gtl~T 386 (498)
T KOG4328|consen 317 NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS----------PFLSTLPHRRSVNSAYFSPSGGTLLT 386 (498)
T ss_pred hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC----------cceecccccceeeeeEEcCCCCceEe
Confidence 5667888999999999665 689999999999999985432110 24455577888999999998665665
Q ss_pred -ecCCEEEEEEcC----Cccchhhhhcccc----CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 373 -THGSTLQWLSVE----TGKVLDTAEKAHE----GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 373 -~~~~~i~i~d~~----~~~~~~~~~~~h~----~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
+.|..|+|||.. .-..+..+...+. -......|.|+. .+++.|-.-..|-|+|-..++
T Consensus 387 T~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~--------~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 387 TCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDY--------NLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred eccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCc--------cEEEEeccCcceeEEcCCCCE
Confidence 669999999983 3344444431111 135567899997 899999988889999987765
No 175
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.82 E-value=5.4e-17 Score=142.69 Aligned_cols=285 Identities=12% Similarity=0.143 Sum_probs=166.9
Q ss_pred EEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCC
Q 013578 107 ATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLP 186 (440)
Q Consensus 107 ~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (440)
++...|+.|.+|++.+... ....... ...+.+..++++|++++|++++... ..+..|+........ ..
T Consensus 6 ~~~~~~~~I~~~~~~~~g~--l~~~~~~-~~~~~~~~l~~spd~~~lyv~~~~~--~~i~~~~~~~~g~l~---~~---- 73 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGA--LTLLQVV-DVPGQVQPMVISPDKRHLYVGVRPE--FRVLSYRIADDGALT---FA---- 73 (330)
T ss_pred EEcCCCCCEEEEEECCCCc--eeeeeEE-ecCCCCccEEECCCCCEEEEEECCC--CcEEEEEECCCCceE---Ee----
Confidence 3446799999999964321 1122222 2346678899999999998876542 333333322100000 00
Q ss_pred CCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC-c---eeeeeeCCCCcccEEEecCCCC
Q 013578 187 GPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG-K---LLGNVDTNQLKNNMAAISPNGR 262 (440)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~---~~~~~~~~~~~v~~~~~s~~~~ 262 (440)
........+..+.++|+++.++++...++.|.+|++.+. . .+..+.. .....+++++|+++
T Consensus 74 --------------~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~ 138 (330)
T PRK11028 74 --------------AESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNR 138 (330)
T ss_pred --------------eeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCC
Confidence 000000112345568899955555556889999998643 2 2222222 23456788999999
Q ss_pred eEEEEe-cCCCEEEEEeEecCCCceeee-eeeeeeeccccceEEEEEcCCCCEEEEEeC-CCcEEEEecCccc-cccCCC
Q 013578 263 FLAAAA-FTADVKVWEIVYSKDGLVKAV-TSVMQLKGHKSAVTWLCFAPNSEQIITASK-DGTLRVWNINVRY-HLDEDP 338 (440)
Q Consensus 263 ~l~~~~-~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~-dg~i~iwd~~~~~-~~~~~~ 338 (440)
++++++ .++.|.+||+.... ..... ........ ......++|+|+|++++++.. +++|.+|+++... .+
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g--~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~---- 211 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDG--HLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI---- 211 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCC--cccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE----
Confidence 887665 46899999996522 11000 00111111 234678999999999988876 8999999997321 10
Q ss_pred CccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcCCccchhhhhccc---cCCeEEEEecCCCCCCC
Q 013578 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSVETGKVLDTAEKAH---EGEITCMAWAPKTIPMG 413 (440)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~~~~~~~~~~~~h---~~~v~~v~~~~~~~~~~ 413 (440)
.....+....... ........+.++|+|++++++. ++.|.+|++........+. +| ......+.|+|++
T Consensus 212 ~~~~~~~~~p~~~-~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~-~~~~~~~~p~~~~~~~dg---- 285 (330)
T PRK11028 212 ECVQTLDMMPADF-SDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE-GHQPTETQPRGFNIDHSG---- 285 (330)
T ss_pred EEEEEEecCCCcC-CCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe-EEEeccccCCceEECCCC----
Confidence 0000000000000 0111233588999999998874 6899999986543211111 12 1245689999998
Q ss_pred CCcceEEEEeeC-CCeEEEEeCC
Q 013578 414 NQQVSVLATSSV-DKKVKLWLAP 435 (440)
Q Consensus 414 ~~~~~~l~t~~~-Dg~i~vw~~~ 435 (440)
++|+++.. +++|.+|+++
T Consensus 286 ----~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 286 ----KYLIAAGQKSHHISVYEID 304 (330)
T ss_pred ----CEEEEEEccCCcEEEEEEc
Confidence 77776665 8999999875
No 176
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.81 E-value=7.5e-18 Score=151.26 Aligned_cols=257 Identities=17% Similarity=0.204 Sum_probs=175.4
Q ss_pred CcceeEEEEcc-CCCEEEEeeCCCcEEEEecCCCCCc-ceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEee
Q 013578 91 GDSVTGLCFSS-DGKCLATACADGVIRVHKLDDASSK-SFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMY 168 (440)
Q Consensus 91 ~~~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~-~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~ 168 (440)
...|.|++|+| +..+||.|..+|.|.+||+..+... ..........|..++..+.|..+.
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~------------------ 303 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNE------------------ 303 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccC------------------
Confidence 67899999999 6778899999999999999876543 122222334455566666665421
Q ss_pred ccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce-ee----
Q 013578 169 GEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL-LG---- 243 (440)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-~~---- 243 (440)
.+ .-+++++.||.|..|+++.-.. ..
T Consensus 304 ------------------------------------------------~~-~~f~s~ssDG~i~~W~~~~l~~P~e~~~~ 334 (555)
T KOG1587|consen 304 ------------------------------------------------HN-TEFFSLSSDGSICSWDTDMLSLPVEGLLL 334 (555)
T ss_pred ------------------------------------------------CC-CceEEEecCCcEeeeeccccccchhhccc
Confidence 11 1578888899999998764322 11
Q ss_pred -eee------CCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEE
Q 013578 244 -NVD------TNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315 (440)
Q Consensus 244 -~~~------~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 315 (440)
... .....++++.|.+ +.+.|++|+++|.|.--..................+..|.++|.++.++|=+..++
T Consensus 335 ~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~f 414 (555)
T KOG1587|consen 335 ESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNF 414 (555)
T ss_pred ccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcccee
Confidence 111 1234567888887 56789999999988763322221111112233446677899999999999777665
Q ss_pred EEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEec-CCEEEEEEcCCcc--chhh
Q 013578 316 TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATH-GSTLQWLSVETGK--VLDT 391 (440)
Q Consensus 316 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~-~~~i~i~d~~~~~--~~~~ 391 (440)
..+.|.+|+||..... ..++.....+...+++++|||-.. .+++++ +|.|.+||+.... +...
T Consensus 415 ls~gDW~vriWs~~~~-------------~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s 481 (555)
T KOG1587|consen 415 LSVGDWTVRIWSEDVI-------------ASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLS 481 (555)
T ss_pred eeeccceeEeccccCC-------------CCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccc
Confidence 5555999999987621 112333344455589999999987 444555 8999999986543 3444
Q ss_pred hhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 392 AEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 392 ~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
. ..+....+.+.|++.+ +.|+.|...|++.+|++..
T Consensus 482 ~-~~~~~~l~~~~~s~~g--------~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 482 Q-KVCSPALTRVRWSPNG--------KLLAVGDANGTTHILKLSE 517 (555)
T ss_pred c-cccccccceeecCCCC--------cEEEEecCCCcEEEEEcCc
Confidence 3 2346677888999988 8999999999999999963
No 177
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=1.7e-17 Score=152.27 Aligned_cols=307 Identities=14% Similarity=0.218 Sum_probs=197.4
Q ss_pred cceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEcc--CCCeEEEEeecCCcceEEeec
Q 013578 92 DSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFAD--NATSIVVATHNLSGCSLYMYG 169 (440)
Q Consensus 92 ~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~l~~~~~~~~~~~~~~~~ 169 (440)
.+-..+.|+|=...++++...-.|+|||.+.+... ............|+.+.+.. |...+++++.| ..+++|.
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l--~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~d---GvIRIwk 1139 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLL--NGFDNGAFPDTRVSDLELINEQDDALLLTASSD---GVIRIWK 1139 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCcee--ccccCCCCCCCccceeeeecccchhheeeeccC---ceEEEec
Confidence 34567888888888999887778999999876531 12222223446788888865 45577777777 4666766
Q ss_pred cccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCC-
Q 013578 170 EEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN- 248 (440)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~- 248 (440)
....... .+..+..|......... ..+...++.......+|+++++-..|+|||......+..+...
T Consensus 1140 ~y~~~~~--------~~eLVTaw~~Ls~~~~~----~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s 1207 (1387)
T KOG1517|consen 1140 DYADKWK--------KPELVTAWSSLSDQLPG----ARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGS 1207 (1387)
T ss_pred ccccccC--------CceeEEeeccccccCcc----CCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCC
Confidence 5433210 00001111111100000 0000000001111115666666888999999987777766543
Q ss_pred CCcccEEEec-CCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccc--eEEEEEcCCCCE-EEEEeCCCcEE
Q 013578 249 QLKNNMAAIS-PNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSA--VTWLCFAPNSEQ-IITASKDGTLR 324 (440)
Q Consensus 249 ~~~v~~~~~s-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~p~~~~-l~s~~~dg~i~ 324 (440)
...++++.-+ ..|+.+++|..||.|++||.+..... ..+...+.|+.. |..+.+.++|-- |++|+.||.|+
T Consensus 1208 ~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d-----s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~ 1282 (1387)
T KOG1517|consen 1208 STLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD-----SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQ 1282 (1387)
T ss_pred CccceeecccccCCceEEEeecCCceEEeecccCCcc-----ccceeecccCCcccceeEEeecCCCcceeeeccCCeEE
Confidence 3345555433 34799999999999999999865421 256677788887 999999987754 99999999999
Q ss_pred EEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhh------ccccC
Q 013578 325 VWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAE------KAHEG 398 (440)
Q Consensus 325 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~------~~h~~ 398 (440)
+||++..... ....+......| ...+++..+++..++|+|+.+.|.||++...+ +..+. ....+
T Consensus 1283 ~~DlR~~~~e-------~~~~iv~~~~yG--s~lTal~VH~hapiiAsGs~q~ikIy~~~G~~-l~~~k~n~~F~~q~~g 1352 (1387)
T KOG1517|consen 1283 LLDLRMSSKE-------TFLTIVAHWEYG--SALTALTVHEHAPIIASGSAQLIKIYSLSGEQ-LNIIKYNPGFMGQRIG 1352 (1387)
T ss_pred EEecccCccc-------ccceeeeccccC--ccceeeeeccCCCeeeecCcceEEEEecChhh-hcccccCcccccCcCC
Confidence 9999963110 111111111111 13778999999999999999999999986433 33221 12345
Q ss_pred CeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 399 EITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 399 ~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
.+.|++|+|-. -+||.|+.|.+|.||..+..+
T Consensus 1353 s~scL~FHP~~--------~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1353 SVSCLAFHPHR--------LLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred Ccceeeecchh--------HhhhhccCCceEEEeecCCcC
Confidence 78999999987 788999999999999987654
No 178
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.3e-18 Score=149.88 Aligned_cols=287 Identities=15% Similarity=0.133 Sum_probs=200.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCC--EEEEeeCCCcEEEEecCCCC-----
Q 013578 56 PISKKSHSKPHSHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGK--CLATACADGVIRVHKLDDAS----- 124 (440)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~--~l~t~s~dg~v~vW~~~~~~----- 124 (440)
....+.+++..-.++++.++++|+|.. ++++.. -.+.|.|++|+|.+. .||.+-.+ .+-|-+..-+.
T Consensus 403 Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivnp~~G~~~e~~ 480 (733)
T KOG0650|consen 403 VRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE-CVLIVNPIFGDRLEVG 480 (733)
T ss_pred EEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecC-ceEEeCccccchhhhc
Confidence 334556667777889999999999975 444443 356899999999765 34443322 23333321110
Q ss_pred -------------C--------------cceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccc
Q 013578 125 -------------S--------------KSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTN 177 (440)
Q Consensus 125 -------------~--------------~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 177 (440)
. ....-+.....|...|..+.|+..|.||+++..++....+.+.+..+.....
T Consensus 481 ~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~ 560 (733)
T KOG0650|consen 481 PTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQS 560 (733)
T ss_pred chhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccC
Confidence 0 0001123445567889999999999999999999888888888877664333
Q ss_pred cccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEe
Q 013578 178 EGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAI 257 (440)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 257 (440)
........ +..+.|.|... +|+.++.. .|++||+...+.++.+.....-+..+++
T Consensus 561 PF~kskG~-----------------------vq~v~FHPs~p-~lfVaTq~-~vRiYdL~kqelvKkL~tg~kwiS~msi 615 (733)
T KOG0650|consen 561 PFRKSKGL-----------------------VQRVKFHPSKP-YLFVATQR-SVRIYDLSKQELVKKLLTGSKWISSMSI 615 (733)
T ss_pred chhhcCCc-----------------------eeEEEecCCCc-eEEEEecc-ceEEEehhHHHHHHHHhcCCeeeeeeee
Confidence 22211111 11122344444 55555554 4999999988888888777778999999
Q ss_pred cCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCC
Q 013578 258 SPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDED 337 (440)
Q Consensus 258 s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 337 (440)
+|.|.-|++|+.|+++..||+.... .....+.-|...|++++||+.-.+|++|+.||++.|+.-.-...+.++
T Consensus 616 hp~GDnli~gs~d~k~~WfDldlss-------kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qn 688 (733)
T KOG0650|consen 616 HPNGDNLILGSYDKKMCWFDLDLSS-------KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQN 688 (733)
T ss_pred cCCCCeEEEecCCCeeEEEEcccCc-------chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcC
Confidence 9999999999999999999997664 356778889999999999999999999999999999865433222222
Q ss_pred CCccccccccccCCCCCeee----eeeEEeCCCCCEEEEe-cCCEEEEE
Q 013578 338 PKTLKVLPIPLLDSNGATLQ----YDRLSLSSDGKILAAT-HGSTLQWL 381 (440)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~----v~~~~~s~~g~~l~~~-~~~~i~i~ 381 (440)
+.. .++....+|... |..+.|+|...+|.++ .||.|++|
T Consensus 689 pli-----VPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 689 PLI-----VPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred Cce-----EeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 221 233334444443 8889999999988875 58999998
No 179
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=1e-17 Score=137.25 Aligned_cols=188 Identities=17% Similarity=0.242 Sum_probs=143.5
Q ss_pred EEEEeeCCceEEEEeCCCC-------ceeeeeeCCCCcccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCceeeeeee
Q 013578 221 IIASCSEGTDISIWHGKTG-------KLLGNVDTNQLKNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSV 292 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 292 (440)
.+++|++|.+|.||++..+ +++..+.+|...|..++|+|. .+.|++++.|.+|.+|++.++. .+
T Consensus 96 vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tge--------al 167 (472)
T KOG0303|consen 96 VIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGE--------AL 167 (472)
T ss_pred eeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCc--------ee
Confidence 7999999999999998754 346678899999999999995 5789999999999999998876 45
Q ss_pred eeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE
Q 013578 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA 372 (440)
Q Consensus 293 ~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 372 (440)
..+. |.+.|.++.|+-||.+|++.+.|..|||||.+++..+.+... ..| ..-..+.|-.+|.++.+
T Consensus 168 i~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~-----------heG--~k~~Raifl~~g~i~tT 233 (472)
T KOG0303|consen 168 ITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVA-----------HEG--AKPARAIFLASGKIFTT 233 (472)
T ss_pred eecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccc-----------ccC--CCcceeEEeccCceeee
Confidence 5566 999999999999999999999999999999998766543210 111 11235778888987777
Q ss_pred ec----CCEEEEEEcCCccchhhhh-ccccCCeEEEEecCCCCCCCCCcceEEE-EeeCCCeEEEEeCCCCC
Q 013578 373 TH----GSTLQWLSVETGKVLDTAE-KAHEGEITCMAWAPKTIPMGNQQVSVLA-TSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 373 ~~----~~~i~i~d~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~~~~~~~~l~-t~~~Dg~i~vw~~~~~~ 438 (440)
|. +..+-+||...-+....+. -..+..|.=--|.+|. .++. +|-.|+.||.|.+.+..
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt--------~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDT--------SIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccccccccceeccCcccccCcceeEEeccCCceEEeeecCCC--------CEEEEEecCCcceEEEEecCCC
Confidence 63 6789999987655432221 1234456666677776 4554 55569999999998755
No 180
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.5e-18 Score=148.07 Aligned_cols=237 Identities=15% Similarity=0.160 Sum_probs=164.9
Q ss_pred cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC 163 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~ 163 (440)
...|.||++.|+|++|+.||.+|++||.|-.+.|||.-..+ .+..+..+|...|.++.|.|...
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K----llhsI~TgHtaNIFsvKFvP~tn------------ 106 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK----LLHSISTGHTANIFSVKFVPYTN------------ 106 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcc----eeeeeecccccceeEEeeeccCC------------
Confidence 45799999999999999999999999999999999987432 24566778889999999988532
Q ss_pred eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC-----
Q 013578 164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT----- 238 (440)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~----- 238 (440)
..++++|..|..|+++|+..
T Consensus 107 -------------------------------------------------------nriv~sgAgDk~i~lfdl~~~~~~~ 131 (758)
T KOG1310|consen 107 -------------------------------------------------------NRIVLSGAGDKLIKLFDLDSSKEGG 131 (758)
T ss_pred -------------------------------------------------------CeEEEeccCcceEEEEecccccccc
Confidence 12789999999999999874
Q ss_pred -----CceeeeeeCCCCcccEEEecCCC-CeEEEEecCCCEEEEEeEecCCCceee--eeeeeeeeccccceEEEEEcCC
Q 013578 239 -----GKLLGNVDTNQLKNNMAAISPNG-RFLAAAAFTADVKVWEIVYSKDGLVKA--VTSVMQLKGHKSAVTWLCFAPN 310 (440)
Q Consensus 239 -----~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~p~ 310 (440)
.+....+..|...|..++..|++ +.+.++++||+|+-||++......... ...+..+....-...|++.+|.
T Consensus 132 ~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~ 211 (758)
T KOG1310|consen 132 MDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPS 211 (758)
T ss_pred cccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCC
Confidence 23445566788889999999988 899999999999999998643211110 0011112222234678999995
Q ss_pred C-CEEEEEeCCCcEEEEecCccccccCCC-----------Ccccccc-ccccCCCC----CeeeeeeEEeCCCCCEEEEe
Q 013578 311 S-EQIITASKDGTLRVWNINVRYHLDEDP-----------KTLKVLP-IPLLDSNG----ATLQYDRLSLSSDGKILAAT 373 (440)
Q Consensus 311 ~-~~l~s~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~-~~~~~~~~----~~~~v~~~~~s~~g~~l~~~ 373 (440)
. .+|+.|+.|-..++||.+......... .+...+. .......+ ....++-++|+|+|.-|.+.
T Consensus 212 rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs 291 (758)
T KOG1310|consen 212 RPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVS 291 (758)
T ss_pred CCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEe
Confidence 5 478999999999999965322111100 0111110 00101111 11235678999999866665
Q ss_pred -cCCEEEEEEcCCccchhh
Q 013578 374 -HGSTLQWLSVETGKVLDT 391 (440)
Q Consensus 374 -~~~~i~i~d~~~~~~~~~ 391 (440)
+...|+++|+..++....
T Consensus 292 ~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 292 WGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred eCCeEEEEEeecCCCCcee
Confidence 467899999988775443
No 181
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.2e-17 Score=143.40 Aligned_cols=288 Identities=17% Similarity=0.253 Sum_probs=193.8
Q ss_pred ccCcceeEEEEccCCCEE-EEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceE-EEccCCCeEEEEeecCCcceEE
Q 013578 89 GHGDSVTGLCFSSDGKCL-ATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAV-AFADNATSIVVATHNLSGCSLY 166 (440)
Q Consensus 89 ~H~~~V~~l~~s~dg~~l-~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v-~~~~~~~~l~~~~~~~~~~~~~ 166 (440)
+|...-+.|..+|||+|+ |||-+--.|++||+...... ........+..+ -.+.|-..++....| ..|.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK------FERhlDae~V~feiLsDD~SK~v~L~~D---R~Ie 119 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK------FERHLDAEVVDFEILSDDYSKSVFLQND---RTIE 119 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceee------eeecccccceeEEEeccchhhheEeecC---ceee
Confidence 588899999999999985 56667889999999875432 111112333222 233333332222222 1111
Q ss_pred eeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeee
Q 013578 167 MYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD 246 (440)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 246 (440)
+.. ..+.....-...++....+..+... |+.++....|+-++++.|..+..+.
T Consensus 120 fHa-------------------------k~G~hy~~RIP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~ 172 (703)
T KOG2321|consen 120 FHA-------------------------KYGRHYRTRIPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFE 172 (703)
T ss_pred ehh-------------------------hcCeeeeeecCcCCccccccCCCcc--EEEeecCcceEEEEccccccccccc
Confidence 110 0001111111111111112223333 3344444559999999999999998
Q ss_pred CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc-----ceEEEEEcCCCCEEEEEeCCC
Q 013578 247 TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS-----AVTWLCFAPNSEQIITASKDG 321 (440)
Q Consensus 247 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~p~~~~l~s~~~dg 321 (440)
.....+.++.+++...+|++|+.+|.|..||.+....-. ..........|.+ .|+++.|+.+|-.+++|+.+|
T Consensus 173 ~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~--~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G 250 (703)
T KOG2321|consen 173 TDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVG--TLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG 250 (703)
T ss_pred cccccceeeeecCccceEEecccCceEEEecchhhhhhe--eeecccccCCCccccccCcceEEEecCCceeEEeeccCC
Confidence 888899999999999999999999999999987654211 1111122223333 499999999999999999999
Q ss_pred cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC--CCEEEEecCCEEEEEEcCCccchhhhhccccCC
Q 013578 322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD--GKILAATHGSTLQWLSVETGKVLDTAEKAHEGE 399 (440)
Q Consensus 322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~ 399 (440)
.|.|||+++...+. ....+...+|..+.|.+. +..+++.+...++|||-.+|+....++ ....
T Consensus 251 ~v~iyDLRa~~pl~-------------~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE--pt~~ 315 (703)
T KOG2321|consen 251 SVLIYDLRASKPLL-------------VKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE--PTSD 315 (703)
T ss_pred cEEEEEcccCCcee-------------ecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeecc--ccCC
Confidence 99999999765432 223344566778888766 457778888899999999999999886 4556
Q ss_pred eEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 400 ITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 400 v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
++.+++-|++ .+++++-+++.+..|=++..
T Consensus 316 lND~C~~p~s--------Gm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 316 LNDFCFVPGS--------GMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred cCceeeecCC--------ceEEEecCCCcceeEEcccc
Confidence 9999999998 79999999998888877654
No 182
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.80 E-value=1.1e-16 Score=147.50 Aligned_cols=250 Identities=28% Similarity=0.522 Sum_probs=185.5
Q ss_pred cccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCC-CCCCCceEEE-ccCCCeEEEEeecCCcc
Q 013578 86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLP-PGGPPTAVAF-ADNATSIVVATHNLSGC 163 (440)
Q Consensus 86 ~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~-~~~~v~~v~~-~~~~~~l~~~~~~~~~~ 163 (440)
.+.+|...|.++.+.+++..++.++.|+.+.+|+...... ....... +...+..+.+ .++
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-------------- 121 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK----LIKSLEGLHDSSVSKLALSSPD-------------- 121 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce----eEEEEeccCCCceeeEEEECCC--------------
Confidence 5678999999999999999999999999999999886530 1111111 1112222222 111
Q ss_pred eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEE-eeCCceEEEEeCCC-Cce
Q 013578 164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIAS-CSEGTDISIWHGKT-GKL 241 (440)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~~d~~i~vwd~~~-~~~ 241 (440)
+...++. +..|+.+.+|+... ...
T Consensus 122 ------------------------------------------------------~~~~~~~~~~~d~~~~~~~~~~~~~~ 147 (466)
T COG2319 122 ------------------------------------------------------GNSILLASSSLDGTVKLWDLSTPGKL 147 (466)
T ss_pred ------------------------------------------------------cceEEeccCCCCccEEEEEecCCCeE
Confidence 1113444 34488999999998 778
Q ss_pred eeeeeCCCCcccEEEecCCCCeEEEEec-CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCC-EEEEEeC
Q 013578 242 LGNVDTNQLKNNMAAISPNGRFLAAAAF-TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSE-QIITASK 319 (440)
Q Consensus 242 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~~~ 319 (440)
...+..|...+..++|+|++..+++++. |+.+++|++.... .+..+.+|...|.+++|+|++. .+++++.
T Consensus 148 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 219 (466)
T COG2319 148 IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK--------PLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219 (466)
T ss_pred EEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc--------eEEeeccCCCceEEEEEcCCcceEEEEecC
Confidence 8888899999999999999999998886 9999999987643 5667777999999999999998 5556589
Q ss_pred CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcCCccc-hhhhhcccc
Q 013578 320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVETGKV-LDTAEKAHE 397 (440)
Q Consensus 320 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~~~~~-~~~~~~~h~ 397 (440)
|+.|++||...+..... ...++.... ...|++++.+++++ .++.+++|+...... +..+ .+|.
T Consensus 220 d~~i~~wd~~~~~~~~~-------------~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~ 284 (466)
T COG2319 220 DGTIRLWDLSTGKLLRS-------------TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-SGHS 284 (466)
T ss_pred CCcEEEEECCCCcEEee-------------ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-ecCC
Confidence 99999998774332211 112222222 22899999777754 489999999987765 4444 5788
Q ss_pred CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 398 GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 398 ~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
..|.++.|.|++ ..+++++.|+.+++|++....
T Consensus 285 ~~v~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 285 SSVLSVAFSPDG--------KLLASGSSDGTVRLWDLETGK 317 (466)
T ss_pred ccEEEEEECCCC--------CEEEEeeCCCcEEEEEcCCCc
Confidence 999999999976 677779999999999887653
No 183
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.80 E-value=3.5e-17 Score=130.65 Aligned_cols=242 Identities=19% Similarity=0.205 Sum_probs=173.4
Q ss_pred cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeec
Q 013578 90 HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYG 169 (440)
Q Consensus 90 H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~ 169 (440)
-.++|+|.+|++|+..+|.+-....|.||...... .+........|...|+.+.|.|..+.
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~--~w~~~htls~Hd~~vtgvdWap~snr----------------- 69 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD--LWEPAHTLSEHDKIVTGVDWAPKSNR----------------- 69 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCC--CceeceehhhhCcceeEEeecCCCCc-----------------
Confidence 45799999999999999999999999999987654 24456677788899999999987664
Q ss_pred cccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC---ceeeeee
Q 013578 170 EEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG---KLLGNVD 246 (440)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~---~~~~~~~ 246 (440)
+++|+.|..-++|....+ ++...+.
T Consensus 70 ----------------------------------------------------Ivtcs~drnayVw~~~~~~~WkptlvLl 97 (361)
T KOG1523|consen 70 ----------------------------------------------------IVTCSHDRNAYVWTQPSGGTWKPTLVLL 97 (361)
T ss_pred ----------------------------------------------------eeEccCCCCccccccCCCCeeccceeEE
Confidence 555666666777766322 3334444
Q ss_pred CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 013578 247 TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVW 326 (440)
Q Consensus 247 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iw 326 (440)
.++...+++.|+|.++.||+|+....|.||-+....+.-+ ..+.-+.+.+.|++++|+|++-+|++|+.|+.+|++
T Consensus 98 RiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWV----sKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVf 173 (361)
T KOG1523|consen 98 RINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWV----SKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVF 173 (361)
T ss_pred EeccceeeEeecCcCceEEeccCccEEEEEEEecccceeh----hhhhCCccccceeeeeccCCcceecccccCcceeEE
Confidence 5677889999999999999999999999998866553221 223344578899999999999999999999999999
Q ss_pred ecCccccccCCCC-cc--cc--ccccccCCCCCeeeeeeEEeCCCCCEEEE-ecCCEEEEEEcCCcc-chhhhhccccCC
Q 013578 327 NINVRYHLDEDPK-TL--KV--LPIPLLDSNGATLQYDRLSLSSDGKILAA-THGSTLQWLSVETGK-VLDTAEKAHEGE 399 (440)
Q Consensus 327 d~~~~~~~~~~~~-~~--~~--~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~i~i~d~~~~~-~~~~~~~~h~~~ 399 (440)
..--.. +.+.+. .. .. +...+.........+..+.|+|+|..|+- +.|+.+.+-|..... .+..+...+ -+
T Consensus 174 SayIK~-Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~-lP 251 (361)
T KOG1523|consen 174 SAYIKG-VDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQ-LP 251 (361)
T ss_pred EEeeec-cccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhcc-CC
Confidence 753211 111110 00 00 11111222244567889999999999985 679999999887765 333433333 67
Q ss_pred eEEEEecCC
Q 013578 400 ITCMAWAPK 408 (440)
Q Consensus 400 v~~v~~~~~ 408 (440)
..++.|-.+
T Consensus 252 ~ls~~~ise 260 (361)
T KOG1523|consen 252 LLSVSWISE 260 (361)
T ss_pred ceeeEeecC
Confidence 788888766
No 184
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.79 E-value=2.2e-18 Score=150.56 Aligned_cols=244 Identities=15% Similarity=0.244 Sum_probs=176.2
Q ss_pred cccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578 82 LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS 161 (440)
Q Consensus 82 ~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~ 161 (440)
..+++|+||.+.|+|++|+.||+++|+|+.|+.|.+|+-.-.. .....|+..|.++.|+|-...+++++-+
T Consensus 44 ~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-------~LkYSH~D~IQCMsFNP~~h~LasCsLs-- 114 (1081)
T KOG1538|consen 44 TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-------ILKYSHNDAIQCMSFNPITHQLASCSLS-- 114 (1081)
T ss_pred ccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-------eeeeccCCeeeEeecCchHHHhhhcchh--
Confidence 3578999999999999999999999999999999999865432 2345688999999999976655544322
Q ss_pred cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578 162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL 241 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 241 (440)
. .-+|.......
T Consensus 115 -------------------------------------------------------------------d-FglWS~~qK~V 126 (1081)
T KOG1538|consen 115 -------------------------------------------------------------------D-FGLWSPEQKSV 126 (1081)
T ss_pred -------------------------------------------------------------------h-ccccChhhhhH
Confidence 1 44565543322
Q ss_pred eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCC-----CEEEE
Q 013578 242 LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS-----EQIIT 316 (440)
Q Consensus 242 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-----~~l~s 316 (440)
...+ ....+.+++|..||++|+.|-.+|+|.+-+-.... .-.+..-.|..++|++++|+|.. ..++.
T Consensus 127 -~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEe------k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV 198 (1081)
T KOG1538|consen 127 -SKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEE------KVKIERPGGSNSPIWSICWNPSSGEGRNDILAV 198 (1081)
T ss_pred -Hhhh-hheeEEEeeecCCCcEEEEeccCceEEeecCCCCc------ceEEeCCCCCCCCceEEEecCCCCCCccceEEE
Confidence 2221 23467889999999999999999999987532221 11233445678899999999954 35777
Q ss_pred EeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcCCccchhhhhcc
Q 013578 317 ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVETGKVLDTAEKA 395 (440)
Q Consensus 317 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~~~~~~~~~~~~ 395 (440)
.....++.+|.+..... ...+.+ ...-.|+++.++|.|+..| +++.+.+|.. .|-.+.++ ..
T Consensus 199 ~DW~qTLSFy~LsG~~I-----gk~r~L----------~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTv-g~ 261 (1081)
T KOG1538|consen 199 ADWGQTLSFYQLSGKQI-----GKDRAL----------NFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTV-GE 261 (1081)
T ss_pred EeccceeEEEEecceee-----cccccC----------CCCchhheeccCCcEEEEccCCCceEEEee-cCeEEeec-cc
Confidence 77777888887763311 001111 1123479999999988765 5899998854 45555555 24
Q ss_pred ccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 396 HEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 396 h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
.+.-|+.++..|++ ..++.|..||+|-.|++-
T Consensus 262 ~D~WIWtV~~~PNs--------Q~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 262 QDSWIWTVQAKPNS--------QYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred cceeEEEEEEccCC--------ceEEEEEccCeeehhhhH
Confidence 66789999999998 899999999999988864
No 185
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.79 E-value=1.7e-17 Score=136.45 Aligned_cols=145 Identities=17% Similarity=0.275 Sum_probs=116.5
Q ss_pred CCCCCCCCCCcccCccc-------------cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCC------CC---
Q 013578 67 SHSHGDKDQNKRHHPLD-------------VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDD------AS--- 124 (440)
Q Consensus 67 ~~~~~~~~~~~~~~~~~-------------~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~------~~--- 124 (440)
..+++..|..+++|... +..|..|+.+|+++.|+|+|+.||||+.+|.|.+|.... ..
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 34677777777777432 457889999999999999999999999999999998762 11
Q ss_pred --CcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeeccccccccee
Q 013578 125 --SKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRA 202 (440)
Q Consensus 125 --~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (440)
.+.+........|...+..++|+|++.
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~Ws~d~~--------------------------------------------------- 136 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAWSPDSN--------------------------------------------------- 136 (434)
T ss_pred hCccceEEEEEecccccchhhhhccCCCc---------------------------------------------------
Confidence 223445555566777777777777654
Q ss_pred EEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEe
Q 013578 203 ILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVY 280 (440)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 280 (440)
++++++.|..+++||+..|.....+..|...+..++|.|-++++++-+.|.+.+.+.+..
T Consensus 137 ------------------~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 137 ------------------FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred ------------------eeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeee
Confidence 678888889999999999999999999999999999999999999999888777777643
No 186
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.78 E-value=2e-17 Score=130.29 Aligned_cols=207 Identities=17% Similarity=0.232 Sum_probs=153.3
Q ss_pred ccCcceeEEEEcc-CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEe
Q 013578 89 GHGDSVTGLCFSS-DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYM 167 (440)
Q Consensus 89 ~H~~~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~ 167 (440)
.|..++++..|+. |-++|.++|-|-++.|||++++... .+......|..+|..++|...+.
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~--~vkTQLIAHDKEV~DIaf~~~s~---------------- 209 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSG--TVKTQLIAHDKEVYDIAFLKGSR---------------- 209 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeecccc--ceeeEEEecCcceeEEEeccCcc----------------
Confidence 4678999999997 7789999999999999999986321 12334557889999999976332
Q ss_pred eccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeee-
Q 013578 168 YGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD- 246 (440)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~- 246 (440)
.++++++.||.||+||++..+--..+.
T Consensus 210 ----------------------------------------------------~~FASvgaDGSvRmFDLR~leHSTIIYE 237 (364)
T KOG0290|consen 210 ----------------------------------------------------DVFASVGADGSVRMFDLRSLEHSTIIYE 237 (364)
T ss_pred ----------------------------------------------------ceEEEecCCCcEEEEEecccccceEEec
Confidence 289999999999999999765433332
Q ss_pred --CCCCcccEEEecC-CCCeEEEEec-CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCC-CCEEEEEeCCC
Q 013578 247 --TNQLKNNMAAISP-NGRFLAAAAF-TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPN-SEQIITASKDG 321 (440)
Q Consensus 247 --~~~~~v~~~~~s~-~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~-~~~l~s~~~dg 321 (440)
....+...++|++ |.+++|+-.. ...|.|.|++... ..+..+++|.+.|++++|.|. ...|+|++.|.
T Consensus 238 ~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~-------tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~ 310 (364)
T KOG0290|consen 238 DPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC-------TPVARLRNHQASVNGIAWAPHSSSHICTAGDDC 310 (364)
T ss_pred CCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC-------cceehhhcCcccccceEecCCCCceeeecCCcc
Confidence 2234566778887 4567776544 4579999998665 478899999999999999995 45899999999
Q ss_pred cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC-CCCEEEEecCCEEEEE
Q 013578 322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS-DGKILAATHGSTLQWL 381 (440)
Q Consensus 322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~i~i~ 381 (440)
.+.+||+...-. .....+...-. ...+|+.+.|++ .+.+++.+.++.+.+.
T Consensus 311 qaliWDl~q~~~--------~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 311 QALIWDLQQMPR--------ENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred eEEEEecccccc--------cCCCCchhhhh-ccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 999999985422 01111111111 345689999996 4679999988877664
No 187
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=8e-16 Score=135.30 Aligned_cols=257 Identities=14% Similarity=0.178 Sum_probs=156.8
Q ss_pred cCcceeEEEEccCCCEEEEee-CCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEee
Q 013578 90 HGDSVTGLCFSSDGKCLATAC-ADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMY 168 (440)
Q Consensus 90 H~~~V~~l~~s~dg~~l~t~s-~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~ 168 (440)
+.+....++++||+++|+.++ .++.|.+|+++... . ..... .......+..++|+|++++++++... ...+.+|
T Consensus 33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g-~-l~~~~-~~~~~~~p~~i~~~~~g~~l~v~~~~--~~~v~v~ 107 (330)
T PRK11028 33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG-A-LTFAA-ESPLPGSPTHISTDHQGRFLFSASYN--ANCVSVS 107 (330)
T ss_pred cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC-c-eEEee-eecCCCCceEEEECCCCCEEEEEEcC--CCeEEEE
Confidence 345678899999999887664 57889999997321 1 11111 11233457899999999999998765 2445555
Q ss_pred ccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee-----
Q 013578 169 GEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG----- 243 (440)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~----- 243 (440)
+........... ........+..+.++|+++.++++...++.|.+||+.+...+.
T Consensus 108 ~~~~~g~~~~~~--------------------~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~ 167 (330)
T PRK11028 108 PLDKDGIPVAPI--------------------QIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPA 167 (330)
T ss_pred EECCCCCCCCce--------------------eeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCC
Confidence 443110000000 0000011233344588998677778888999999997643221
Q ss_pred --eeeCCCCcccEEEecCCCCeEEEEec-CCCEEEEEeEecCCCceeeeeeeeeeec---cccceEEEEEcCCCCEEEEE
Q 013578 244 --NVDTNQLKNNMAAISPNGRFLAAAAF-TADVKVWEIVYSKDGLVKAVTSVMQLKG---HKSAVTWLCFAPNSEQIITA 317 (440)
Q Consensus 244 --~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~p~~~~l~s~ 317 (440)
.... ......++|+|+|++++++.. ++.|.+|++..... .......+..+.. +......+.++|++++|+++
T Consensus 168 ~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~ 245 (330)
T PRK11028 168 EVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG-EIECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC 245 (330)
T ss_pred ceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC-CEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe
Confidence 1112 234578999999999998876 89999999974321 1111111111111 11233468999999999888
Q ss_pred eC-CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcC
Q 013578 318 SK-DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSVE 384 (440)
Q Consensus 318 ~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~ 384 (440)
.. ++.|.+|+++...... ....... . + .....+.++|+|++|+++. ++.|.+|++.
T Consensus 246 ~~~~~~I~v~~i~~~~~~~---~~~~~~~----~--~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 246 DRTASLISVFSVSEDGSVL---SFEGHQP----T--E--TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred cCCCCeEEEEEEeCCCCeE---EEeEEEe----c--c--ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 64 7899999996432100 0000000 0 0 1234689999999998765 7899999774
No 188
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=5.5e-17 Score=146.35 Aligned_cols=337 Identities=17% Similarity=0.199 Sum_probs=211.1
Q ss_pred CCCCCCCCCCCCcccCcc--------ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCC
Q 013578 65 PHSHSHGDKDQNKRHHPL--------DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLP 136 (440)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~--------~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~ 136 (440)
....+.++.++.+..|.- ..+.|.-|.+.|++++|++||.+|+|||..|.+.+|.+.++... ....
T Consensus 217 ~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq------fLPR 290 (792)
T KOG1963|consen 217 ERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ------FLPR 290 (792)
T ss_pred cceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcc------cccc
Confidence 334456667776666632 35678889999999999999999999999999999999988743 2223
Q ss_pred CCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCC
Q 013578 137 PGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA 216 (440)
Q Consensus 137 ~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (440)
.+++|..+.++||+...++...|.....+...+............... .. +...... .....+.|
T Consensus 291 Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~----~~-----k~~~~~l------~t~~~idp 355 (792)
T KOG1963|consen 291 LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTP----ST-----KTRPQSL------TTGVSIDP 355 (792)
T ss_pred cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCc----cc-----ccccccc------ceeEEEcC
Confidence 458999999999999999999886665555555443322221111100 00 0000000 01111133
Q ss_pred CCCeEEEEeeCCceEEEEeCCCCceeeeeeC-----------CCCcccEEEecCCCCeEEEEe--------cCC--CEEE
Q 013578 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDT-----------NQLKNNMAAISPNGRFLAAAA--------FTA--DVKV 275 (440)
Q Consensus 217 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~~~~--------~dg--~i~i 275 (440)
.-+ .++-++..+.|.+||+.+.+.+..+.. +...++.++.+..|.+++++- .|| .+++
T Consensus 356 r~~-~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKF 434 (792)
T KOG1963|consen 356 RTN-SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKF 434 (792)
T ss_pred CCC-ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEE
Confidence 222 577788899999999998877666531 123456677788899998874 233 4677
Q ss_pred EEeEecCCCceeeeee-eeeeeccccceEEEEEcC--CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCC
Q 013578 276 WEIVYSKDGLVKAVTS-VMQLKGHKSAVTWLCFAP--NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN 352 (440)
Q Consensus 276 ~d~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~p--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (440)
|-..... +.+.. ......|...+....+.+ .....++++.||.+++|-+..-..+........+..+. .
T Consensus 435 W~~n~~~----kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~----s 506 (792)
T KOG1963|consen 435 WQYNPNS----KTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIG----S 506 (792)
T ss_pred EEEcCCc----ceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeee----c
Confidence 8765443 22222 223346777666655544 23378999999999999986544332222222211111 1
Q ss_pred CCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEE
Q 013578 353 GATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432 (440)
Q Consensus 353 ~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw 432 (440)
-+..+++.++|+.||.+|+++.++.|.+||..+...+.........++..+.+.... .. ...+.....+.+.+|
T Consensus 507 y~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~l~~W 580 (792)
T KOG1963|consen 507 YHKTPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQT-----QN-DGALVHATQQRLSVW 580 (792)
T ss_pred cccCcccchhhcCCCcEEEEecCCEEEEecCCChhhhhccccccccchHhHhhhccc-----cc-ccceeeccCceEehH
Confidence 256678899999999999999999999999998433333322233344444444321 00 123333456778888
Q ss_pred eCCCC
Q 013578 433 LAPSL 437 (440)
Q Consensus 433 ~~~~~ 437 (440)
++-+.
T Consensus 581 Nll~~ 585 (792)
T KOG1963|consen 581 NLLSM 585 (792)
T ss_pred hhhhh
Confidence 87654
No 189
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.78 E-value=1.7e-17 Score=130.49 Aligned_cols=224 Identities=19% Similarity=0.211 Sum_probs=152.8
Q ss_pred ccccc-ccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeE-EecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578 84 VNTLK-GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFL-RINLPPGGPPTAVAFADNATSIVVATHNLS 161 (440)
Q Consensus 84 ~~~l~-~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~ 161 (440)
+..|. .|-+.|.|+.|.|++..|++-. |..|.+|+++........+. .....+....++-+|+|
T Consensus 115 v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~Wsp------------- 180 (370)
T KOG1007|consen 115 VASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSP------------- 180 (370)
T ss_pred hhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCC-------------
Confidence 44455 5667999999999999998876 78899999987653211111 00111122223333333
Q ss_pred cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578 162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL 241 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 241 (440)
.+++. .++ ...|++++.||+++..+
T Consensus 181 -----------------------------------------------------HHdgn-qv~-tt~d~tl~~~D~RT~~~ 205 (370)
T KOG1007|consen 181 -----------------------------------------------------HHDGN-QVA-TTSDSTLQFWDLRTMKK 205 (370)
T ss_pred -----------------------------------------------------CCccc-eEE-EeCCCcEEEEEccchhh
Confidence 23444 333 34577899999998877
Q ss_pred eeeee-CCCCcccEEEecCCCC-eEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCC-CEEEEEe
Q 013578 242 LGNVD-TNQLKNNMAAISPNGR-FLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS-EQIITAS 318 (440)
Q Consensus 242 ~~~~~-~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~~ 318 (440)
...+. .|...+..+.|+|+-+ +|++++.||.|++||.+..+ .++..+.+|..+|+++.|+|.- ++|++++
T Consensus 206 ~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk-------~pv~el~~HsHWvW~VRfn~~hdqLiLs~~ 278 (370)
T KOG1007|consen 206 NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK-------FPVQELPGHSHWVWAVRFNPEHDQLILSGG 278 (370)
T ss_pred hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC-------ccccccCCCceEEEEEEecCccceEEEecC
Confidence 66664 6777899999999764 67889999999999998766 4788999999999999999954 5678999
Q ss_pred CCCcEEEEecCccccccC-------CC----C---ccccc-cccccCCCCCeeeeeeEEeCCCCCEEEEe--cCCEEEEE
Q 013578 319 KDGTLRVWNINVRYHLDE-------DP----K---TLKVL-PIPLLDSNGATLQYDRLSLSSDGKILAAT--HGSTLQWL 381 (440)
Q Consensus 319 ~dg~i~iwd~~~~~~~~~-------~~----~---~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~--~~~~i~i~ 381 (440)
.|..|.+|....-..-.+ .. . ..+.+ ...+.....|...|++++||.-..++.++ .||.+.|=
T Consensus 279 SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs 358 (370)
T KOG1007|consen 279 SDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIIS 358 (370)
T ss_pred CCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEee
Confidence 999999997654321000 00 0 00000 11122445678889999999988877663 58988875
Q ss_pred Ec
Q 013578 382 SV 383 (440)
Q Consensus 382 d~ 383 (440)
.+
T Consensus 359 ~V 360 (370)
T KOG1007|consen 359 SV 360 (370)
T ss_pred cC
Confidence 44
No 190
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=3.2e-17 Score=148.39 Aligned_cols=222 Identities=15% Similarity=0.222 Sum_probs=149.2
Q ss_pred cccccccCcceeEEEEccCCCEEEEeeCC---CcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecC
Q 013578 84 VNTLKGHGDSVTGLCFSSDGKCLATACAD---GVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL 160 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~d---g~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~ 160 (440)
.+.+..|...+...+|||||++|+.++.+ ..|.+||+.++... .+... .+....++|+|||+.|+++..
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~---~l~~~---~g~~~~~~wSPDG~~La~~~~-- 267 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK---VVASF---RGHNGAPAFSPDGSRLAFASS-- 267 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE---EEecC---CCccCceeECCCCCEEEEEEe--
Confidence 34567788899999999999999988754 36999999876432 12111 133456789888887665432
Q ss_pred CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCce--EEEEeCCC
Q 013578 161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTD--ISIWHGKT 238 (440)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~--i~vwd~~~ 238 (440)
.++. |++||+.+
T Consensus 268 ------------------------------------------------------------------~~g~~~Iy~~d~~~ 281 (429)
T PRK01742 268 ------------------------------------------------------------------KDGVLNIYVMGANG 281 (429)
T ss_pred ------------------------------------------------------------------cCCcEEEEEEECCC
Confidence 2232 55567765
Q ss_pred CceeeeeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEE
Q 013578 239 GKLLGNVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA 317 (440)
Q Consensus 239 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~ 317 (440)
++. ..+..+...+....|+|||+.|+..+ .+|...||++..... ....+ .+.. .+..|+|+|++|+..
T Consensus 282 ~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~-------~~~~l-~~~~--~~~~~SpDG~~ia~~ 350 (429)
T PRK01742 282 GTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG-------GASLV-GGRG--YSAQISADGKTLVMI 350 (429)
T ss_pred CCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC-------CeEEe-cCCC--CCccCCCCCCEEEEE
Confidence 554 44555556678899999999877665 578899999865431 11112 2333 457899999999888
Q ss_pred eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEc--CCccchhhhhc
Q 013578 318 SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSV--ETGKVLDTAEK 394 (440)
Q Consensus 318 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~--~~~~~~~~~~~ 394 (440)
+.++ +.+||+.++.... +. . .. ....++|+|||++|+.++ ++...+|++ .+|+....+ .
T Consensus 351 ~~~~-i~~~Dl~~g~~~~--------lt----~-~~---~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l-~ 412 (429)
T PRK01742 351 NGDN-VVKQDLTSGSTEV--------LS----S-TF---LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL-P 412 (429)
T ss_pred cCCC-EEEEECCCCCeEE--------ec----C-CC---CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc-c
Confidence 7765 5569987653210 00 0 00 123578999999988764 676666664 457777777 4
Q ss_pred cccCCeEEEEecCC
Q 013578 395 AHEGEITCMAWAPK 408 (440)
Q Consensus 395 ~h~~~v~~v~~~~~ 408 (440)
.|.+.+..++|+|-
T Consensus 413 ~~~g~~~~p~wsp~ 426 (429)
T PRK01742 413 GSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCCCcccCCC
Confidence 78888999999985
No 191
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.77 E-value=9.3e-18 Score=134.32 Aligned_cols=246 Identities=15% Similarity=0.178 Sum_probs=152.9
Q ss_pred ccccccccCcceeEEEEccCC-CEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578 83 DVNTLKGHGDSVTGLCFSSDG-KCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS 161 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~dg-~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~ 161 (440)
....+.||.++|+.+.|.|+. +++++||.|-+||+|++++..+ ..++.-..+|...|.++.|++++.++++++.|
T Consensus 127 ~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C--v~VfGG~egHrdeVLSvD~~~~gd~i~ScGmD-- 202 (385)
T KOG1034|consen 127 CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC--VAVFGGVEGHRDEVLSVDFSLDGDRIASCGMD-- 202 (385)
T ss_pred hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE--EEEecccccccCcEEEEEEcCCCCeeeccCCc--
Confidence 356788999999999999965 7999999999999999997653 34455567788999999999998866666655
Q ss_pred cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeE-EEEeeCCceEEEEeCCCCc
Q 013578 162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTI-IASCSEGTDISIWHGKTGK 240 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~vwd~~~~~ 240 (440)
..+.+|...........+.. .. +++++... +-+ ....+.+..
T Consensus 203 -hslk~W~l~~~~f~~~lE~s-------~~----------------------~~~~~t~~pfpt----~~~~fp~fs--- 245 (385)
T KOG1034|consen 203 -HSLKLWRLNVKEFKNKLELS-------IT----------------------YSPNKTTRPFPT----PKTHFPDFS--- 245 (385)
T ss_pred -ceEEEEecChhHHhhhhhhh-------cc----------------------cCCCCccCcCCc----ccccccccc---
Confidence 45555544422100000000 00 01111000 000 001111111
Q ss_pred eeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeE-ecCC-----CceeeeeeeeeeeccccceEE--EEEcCCCC
Q 013578 241 LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIV-YSKD-----GLVKAVTSVMQLKGHKSAVTW--LCFAPNSE 312 (440)
Q Consensus 241 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~-~~~~-----~~~~~~~~~~~~~~h~~~v~~--~~~~p~~~ 312 (440)
+-..|...|.|+.|- |+++++=+-++.|..|... .... ........+..+.-....|+- .+|.|-++
T Consensus 246 ---t~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~ 320 (385)
T KOG1034|consen 246 ---TTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK 320 (385)
T ss_pred ---ccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH
Confidence 223456667776664 5789998999999999872 2211 000111223334434444554 45577788
Q ss_pred EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-ecCCEEEEEEcC
Q 013578 313 QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-THGSTLQWLSVE 384 (440)
Q Consensus 313 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~i~i~d~~ 384 (440)
.||.|.+.|.|.+||++..... ..+..........|...+||.||.+|+. ++|+.|.-||..
T Consensus 321 ~la~gnq~g~v~vwdL~~~ep~----------~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 321 MLALGNQSGKVYVWDLDNNEPP----------KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred HHhhccCCCcEEEEECCCCCCc----------cCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9999999999999999965432 1112222334456889999999997765 679999999864
No 192
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.77 E-value=1.5e-17 Score=144.55 Aligned_cols=190 Identities=19% Similarity=0.271 Sum_probs=136.5
Q ss_pred EEEEeeCCceEEEEeCCCC-------ceeeeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeee
Q 013578 221 IIASCSEGTDISIWHGKTG-------KLLGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSV 292 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 292 (440)
.|+.+++||.|++|.+..+ ++...+..|...|+++.|+| -.+.|++++.|-+|++||++..+ ..
T Consensus 642 rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~--------~~ 713 (1012)
T KOG1445|consen 642 RLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK--------LY 713 (1012)
T ss_pred HeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh--------hh
Confidence 6889999999999998754 34566778899999999999 45789999999999999998776 67
Q ss_pred eeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE
Q 013578 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA 372 (440)
Q Consensus 293 ~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 372 (440)
..+.+|.+.|.+++|+|+|+.+++.+.||+|++|+-+.+...-..... +.. ..--.+.|.-||+++++
T Consensus 714 ~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~g------pvg------tRgARi~wacdgr~viv 781 (1012)
T KOG1445|consen 714 SRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKG------PVG------TRGARILWACDGRIVIV 781 (1012)
T ss_pred heeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCC------Ccc------CcceeEEEEecCcEEEE
Confidence 789999999999999999999999999999999998865432111111 111 11236889999998876
Q ss_pred -ecC----CEEEEEEcCCcc--chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 373 -THG----STLQWLSVETGK--VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 373 -~~~----~~i~i~d~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
|.| ..|.+||.++-. .+....-.-.-.+.--.+.+|. .-+++||-.|..|.+|.+--.
T Consensus 782 ~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds-------~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 782 VGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDS-------NVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred ecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCC-------ceEEEecCCCceEEEEEecCC
Confidence 433 578888876543 2221100000011111223332 268889999999999987543
No 193
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.76 E-value=8.5e-18 Score=140.65 Aligned_cols=257 Identities=16% Similarity=0.234 Sum_probs=187.0
Q ss_pred ceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccc
Q 013578 93 SVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEK 172 (440)
Q Consensus 93 ~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 172 (440)
.-..+.++.+|++|+.|+.-|.|..+|..+... .........|.++.|..+.++++++-.. .+++|+...
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L------~~Ei~v~Etv~Dv~~LHneq~~AVAQK~----y~yvYD~~G 200 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL------HFEINVMETVRDVTFLHNEQFFAVAQKK----YVYVYDNNG 200 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeeccccee------eeeeehhhhhhhhhhhcchHHHHhhhhc----eEEEecCCC
Confidence 456789999999999999999999999988753 3333444789999999999999888654 667776554
Q ss_pred ccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcc
Q 013578 173 AISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN 252 (440)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v 252 (440)
...- ++..+......-|.|. ..+|+++++.|.++.-|+.+|+.+..+....+.+
T Consensus 201 tElH-------------------------Clk~~~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~ 254 (545)
T KOG1272|consen 201 TELH-------------------------CLKRHIRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRT 254 (545)
T ss_pred cEEe-------------------------ehhhcCchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCcc
Confidence 3100 0000000111111122 2278999999999999999999999999888999
Q ss_pred cEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccc
Q 013578 253 NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRY 332 (440)
Q Consensus 253 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~ 332 (440)
..++-+|-+..+-+|..+|+|.+|...... ++..+-.|.++|.+|++.++|++++|.+.|..++|||+++..
T Consensus 255 ~vm~qNP~NaVih~GhsnGtVSlWSP~ske--------PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 255 DVMKQNPYNAVIHLGHSNGTVSLWSPNSKE--------PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred chhhcCCccceEEEcCCCceEEecCCCCcc--------hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc
Confidence 999999999999999999999999976554 677777899999999999999999999999999999999654
Q ss_pred cccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEc-CCc--c-chhhhhccccCCeEEEEecCC
Q 013578 333 HLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSV-ETG--K-VLDTAEKAHEGEITCMAWAPK 408 (440)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~-~~~--~-~~~~~~~~h~~~v~~v~~~~~ 408 (440)
.+... . . ......+++|..| +||.+.+..+.||.- ..+ . ...-+...-.+.|..+.|+|-
T Consensus 327 ql~t~----~-------t----p~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~ 390 (545)
T KOG1272|consen 327 QLHTY----R-------T----PHPASNLSLSQKG-LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPY 390 (545)
T ss_pred cccee----e-------c----CCCcccccccccc-ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccH
Confidence 33210 0 0 1224457777655 567777888999953 221 1 111111122358999999997
Q ss_pred C
Q 013578 409 T 409 (440)
Q Consensus 409 ~ 409 (440)
.
T Consensus 391 E 391 (545)
T KOG1272|consen 391 E 391 (545)
T ss_pred H
Confidence 5
No 194
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=6.7e-16 Score=139.45 Aligned_cols=298 Identities=13% Similarity=0.129 Sum_probs=189.0
Q ss_pred ccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEee
Q 013578 89 GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMY 168 (440)
Q Consensus 89 ~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~ 168 (440)
.|+-.++|.++||+++++|+|..||.|.+|.--..+.....+ ....=|...|.+++|+++|.+|++++.. +.+..|
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~-t~lHWH~~~V~~L~fS~~G~~LlSGG~E---~VLv~W 278 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETC-TLLHWHHDEVNSLSFSSDGAYLLSGGRE---GVLVLW 278 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccc-eEEEecccccceeEEecCCceEeecccc---eEEEEE
Confidence 477779999999999999999999999999754312221112 2222355799999999999999999887 567777
Q ss_pred ccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCC
Q 013578 169 GEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN 248 (440)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 248 (440)
..+......-++. ......+.++||+. ..+....|+.|.+....+.+....+.+-
T Consensus 279 q~~T~~kqfLPRL------------------------gs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi 333 (792)
T KOG1963|consen 279 QLETGKKQFLPRL------------------------GSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGI 333 (792)
T ss_pred eecCCCccccccc------------------------CCeeEEEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCc
Confidence 6665432111111 11112233478888 6666677888999987666554444321
Q ss_pred -----------CCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee------ccccceEEEEEcCCC
Q 013578 249 -----------QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK------GHKSAVTWLCFAPNS 311 (440)
Q Consensus 249 -----------~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------~h~~~v~~~~~~p~~ 311 (440)
.+-.+.++++|.-+.++..+..|.|.+||+-..... ... .+.... .+.-.++.++.+-.|
T Consensus 334 ~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i--~~~-~v~~~n~~~~~~n~~v~itav~~~~~g 410 (792)
T KOG1963|consen 334 KPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI--YKL-QVCDENYSDGDVNIQVGITAVARSRFG 410 (792)
T ss_pred cCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccccee--eeE-EEEeecccCCcceeEEeeeeehhhccc
Confidence 333567889998888888889999999998655421 111 111111 233457788888889
Q ss_pred CEEEEEe--------CCC--cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe-CCCCC-EEEE-ecCCEE
Q 013578 312 EQIITAS--------KDG--TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL-SSDGK-ILAA-THGSTL 378 (440)
Q Consensus 312 ~~l~s~~--------~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~g~-~l~~-~~~~~i 378 (440)
.+++|.- .|| .+++|-...... ...+...+.. .|...+....+ ++... ..++ +.||.+
T Consensus 411 s~maT~E~~~d~~~~~~~e~~LKFW~~n~~~k-------t~~L~T~I~~--PH~~~~vat~~~~~~rs~~~vta~~dg~~ 481 (792)
T KOG1963|consen 411 SWMATLEARIDKFNFFDGEVSLKFWQYNPNSK-------TFILNTKINN--PHGNAFVATIFLNPTRSVRCVTASVDGDF 481 (792)
T ss_pred eEEEEeeeeehhhhccCceEEEEEEEEcCCcc-------eeEEEEEEec--CCCceeEEEEEecCcccceeEEeccCCeE
Confidence 9998874 233 477887663211 1111112222 22222333333 33322 4444 569999
Q ss_pred EEEEcCCccchhh---------hhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 379 QWLSVETGKVLDT---------AEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 379 ~i~d~~~~~~~~~---------~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
++|-....+.+.. +-.-|..++++++|+.|| -+++.+.|++|.+||..+
T Consensus 482 KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dG---------slla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 482 KIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDG---------SLLAVSFDDTITIWDYDT 539 (792)
T ss_pred EEEEEecccccCcCccceEEeeeeccccCcccchhhcCCC---------cEEEEecCCEEEEecCCC
Confidence 9998844332211 112378899999999998 567778899999999987
No 195
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.75 E-value=1.4e-16 Score=127.72 Aligned_cols=283 Identities=16% Similarity=0.175 Sum_probs=181.6
Q ss_pred CcceeEEEEccCCCEEEEe-eCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeec
Q 013578 91 GDSVTGLCFSSDGKCLATA-CADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYG 169 (440)
Q Consensus 91 ~~~V~~l~~s~dg~~l~t~-s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~ 169 (440)
-+.|..+.|..|..+++.+ ..|+.|.+|++...+- .........++.+++|+|||+.++..+.= ...+.+|.
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-----~ckIdeg~agls~~~WSPdgrhiL~tseF--~lriTVWS 120 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-----YCKIDEGQAGLSSISWSPDGRHILLTSEF--DLRITVWS 120 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeeccee-----EEEeccCCCcceeeeECCCcceEeeeecc--eeEEEEEE
Confidence 4778999999998877665 6788999999986542 11222334789999999999888776543 24555665
Q ss_pred cccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEee-CCce--EEEEeCCCCceeeeee
Q 013578 170 EEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCS-EGTD--ISIWHGKTGKLLGNVD 246 (440)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~--i~vwd~~~~~~~~~~~ 246 (440)
..+... ...-....+.....+.+||+ +.+.++ .|.. +.+..-.....++.+.
T Consensus 121 L~t~~~------------------------~~~~~pK~~~kg~~f~~dg~-f~ai~sRrDCkdyv~i~~c~~W~ll~~f~ 175 (447)
T KOG4497|consen 121 LNTQKG------------------------YLLPHPKTNVKGYAFHPDGQ-FCAILSRRDCKDYVQISSCKAWILLKEFK 175 (447)
T ss_pred ecccee------------------------EEecccccCceeEEECCCCc-eeeeeecccHHHHHHHHhhHHHHHHHhcC
Confidence 544311 11111112223445688888 444443 3321 2233233345566777
Q ss_pred CCCCcccEEEecCCCCeEEEEec--CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEE
Q 013578 247 TNQLKNNMAAISPNGRFLAAAAF--TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLR 324 (440)
Q Consensus 247 ~~~~~v~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~ 324 (440)
......+.+.|+|||+.|++=.. +-+|+.|. -.-.+..++|+|.+++|+.|+.|+.+|
T Consensus 176 ~dT~DltgieWsPdg~~laVwd~~Leykv~aYe--------------------~~lG~k~v~wsP~~qflavGsyD~~lr 235 (447)
T KOG4497|consen 176 LDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE--------------------RGLGLKFVEWSPCNQFLAVGSYDQMLR 235 (447)
T ss_pred CCcccccCceECCCCcEEEEecchhhheeeeee--------------------eccceeEEEeccccceEEeeccchhhh
Confidence 77777889999999998876432 22222221 124578899999999999999999998
Q ss_pred EEecCccccccC--------------------------------CC---------------------CccccccccccCC
Q 013578 325 VWNINVRYHLDE--------------------------------DP---------------------KTLKVLPIPLLDS 351 (440)
Q Consensus 325 iwd~~~~~~~~~--------------------------------~~---------------------~~~~~~~~~~~~~ 351 (440)
+.+--+-+...+ .+ ...... .+....
T Consensus 236 vlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~l-kp~tD~ 314 (447)
T KOG4497|consen 236 VLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKL-KPPTDF 314 (447)
T ss_pred hhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecc-cCCCCC
Confidence 854221110000 00 000000 011222
Q ss_pred CCCeeeeeeEEeCCCCCEEEEecC---CEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCe
Q 013578 352 NGATLQYDRLSLSSDGKILAATHG---STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKK 428 (440)
Q Consensus 352 ~~~~~~v~~~~~s~~g~~l~~~~~---~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~ 428 (440)
......+..++|++|..|+++-.| +.+.+||++..+....+. ...+|....|+|.. ..|+.+.....
T Consensus 315 pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi--Qk~piraf~WdP~~--------prL~vctg~sr 384 (447)
T KOG4497|consen 315 PNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI--QKHPIRAFEWDPGR--------PRLVVCTGKSR 384 (447)
T ss_pred CCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh--hccceeEEEeCCCC--------ceEEEEcCCce
Confidence 333556778999999999999765 689999999998888876 55679999999987 56666666677
Q ss_pred EEEEeCCC
Q 013578 429 VKLWLAPS 436 (440)
Q Consensus 429 i~vw~~~~ 436 (440)
+++|....
T Consensus 385 LY~W~psg 392 (447)
T KOG4497|consen 385 LYFWAPSG 392 (447)
T ss_pred EEEEcCCC
Confidence 99998764
No 196
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=6.4e-17 Score=134.02 Aligned_cols=199 Identities=16% Similarity=0.212 Sum_probs=141.7
Q ss_pred eEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccccc
Q 013578 95 TGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAI 174 (440)
Q Consensus 95 ~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 174 (440)
.+++|+.+|..|++|+.||++|||++..... ......|...|.++.|+||++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t-----~l~e~~~~~eV~DL~FS~dgk~---------------------- 200 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT-----ILEEIAHHAEVKDLDFSPDGKF---------------------- 200 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh-----hhhhHhhcCccccceeCCCCcE----------------------
Confidence 8899999999999999999999999876542 2344567799999999999874
Q ss_pred ccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeC--CCCcc
Q 013578 175 STNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDT--NQLKN 252 (440)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~~~~v 252 (440)
|++-+.| ..+||+.+++..+..... .....
T Consensus 201 -----------------------------------------------lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~ 232 (398)
T KOG0771|consen 201 -----------------------------------------------LASIGAD-SARVWSVNTGAALARKTPFSKDEMF 232 (398)
T ss_pred -----------------------------------------------EEEecCC-ceEEEEeccCchhhhcCCcccchhh
Confidence 4444555 588999998876655542 22335
Q ss_pred cEEEecCCC-----CeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578 253 NMAAISPNG-----RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN 327 (440)
Q Consensus 253 ~~~~~s~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd 327 (440)
..+.|+.++ ..++....-+.|+.||+..-..... . ...+.......|.+++.+++|++++.|+.||.|.|++
T Consensus 233 ~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~--l-~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~ 309 (398)
T KOG0771|consen 233 SSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNF--L-RLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYD 309 (398)
T ss_pred hhceecccCCCceEEEEEecCCCCceeEEEeeeeccccc--c-chhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEE
Confidence 567777776 3333334456788888754432111 0 1112222335799999999999999999999999999
Q ss_pred cCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcC
Q 013578 328 INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVE 384 (440)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~ 384 (440)
....+.+ .+....|...|+.+.|+||.++++.- ++....+..+.
T Consensus 310 ~~~lq~~-------------~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 310 AKSLQRL-------------QYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred eceeeee-------------EeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 9865443 23345667789999999999998874 46666665543
No 197
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.75 E-value=3.6e-15 Score=137.25 Aligned_cols=264 Identities=29% Similarity=0.490 Sum_probs=191.1
Q ss_pred CCCCCcccCcc-----ccccccccCcceeEEEEccCCCEEEEeeC-CCcEEEEecCCCCCcceeeEEecCCCCCCCceEE
Q 013578 72 DKDQNKRHHPL-----DVNTLKGHGDSVTGLCFSSDGKCLATACA-DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA 145 (440)
Q Consensus 72 ~~~~~~~~~~~-----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~-dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~ 145 (440)
..++....|.. ....+.+|...|.+++|+|++.++++++. |+.+++|++.... .......|...+.+++
T Consensus 131 ~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~ 205 (466)
T COG2319 131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-----PLSTLAGHTDPVSSLA 205 (466)
T ss_pred CCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-----eEEeeccCCCceEEEE
Confidence 33555655543 45678899999999999999999999986 9999999998732 2334444778899999
Q ss_pred EccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEe
Q 013578 146 FADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASC 225 (440)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 225 (440)
|+|++.. .++++
T Consensus 206 ~~~~~~~--------------------------------------------------------------------~~~~~ 217 (466)
T COG2319 206 FSPDGGL--------------------------------------------------------------------LIASG 217 (466)
T ss_pred EcCCcce--------------------------------------------------------------------EEEEe
Confidence 9876541 45556
Q ss_pred eCCceEEEEeCCCCceee-eeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEE
Q 013578 226 SEGTDISIWHGKTGKLLG-NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTW 304 (440)
Q Consensus 226 ~~d~~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~ 304 (440)
+.|+.|++||...+..+. .+..|.... ...|++++..+++++.|+.+++|++..... ....+.+|...|.+
T Consensus 218 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-------~~~~~~~~~~~v~~ 289 (466)
T COG2319 218 SSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS-------LLRTLSGHSSSVLS 289 (466)
T ss_pred cCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc-------EEEEEecCCccEEE
Confidence 788889999988777777 577776664 448999999999999999999999976552 12223678899999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe--cCCEEEEEE
Q 013578 305 LCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT--HGSTLQWLS 382 (440)
Q Consensus 305 ~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~--~~~~i~i~d 382 (440)
+.|+|++..+++++.|+.+++||+.+........ ...+...+..+.+.+++..++.+ .++.+.+|+
T Consensus 290 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 290 VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT------------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred EEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee------------ecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 9999988888889999899999887654322111 11223357778884343455544 478899999
Q ss_pred cCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 383 VETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 383 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
.......... .....+..+.+.+ .. .....+..++.+.+|+.....
T Consensus 358 ~~~~~~~~~~--~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~ 403 (466)
T COG2319 358 LRTGKPLKTL--EGHSNVLSVSFSP-DG-------RVVSSGSTDGTVRLWDLSTGS 403 (466)
T ss_pred cCCCceeEEe--cCCceEEEEEECC-CC-------CEEEEecCCCceEEEecccCe
Confidence 9888722222 1222288888887 41 233348899999999998754
No 198
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=8.3e-17 Score=129.65 Aligned_cols=149 Identities=19% Similarity=0.306 Sum_probs=121.4
Q ss_pred CeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC--CCCEEEEEeCCCcEEEEecCccccccCCCC
Q 013578 262 RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP--NSEQIITASKDGTLRVWNINVRYHLDEDPK 339 (440)
Q Consensus 262 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 339 (440)
..+|++..+|.|++||..+++ .+..++++...++.+.|.. ....+.+|+.||+|++||++........
T Consensus 41 ~~vav~lSngsv~lyd~~tg~--------~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~-- 110 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ--------LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARI-- 110 (376)
T ss_pred eeEEEEecCCeEEEEeccchh--------hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhe--
Confidence 568889999999999998766 7888999999999999977 3567899999999999999976543211
Q ss_pred ccccccccccCCCCC-eeeeeeEEeCCCCCEEEEec-----CCEEEEEEcCCccc-hhhhhccccCCeEEEEecCCCCCC
Q 013578 340 TLKVLPIPLLDSNGA-TLQYDRLSLSSDGKILAATH-----GSTLQWLSVETGKV-LDTAEKAHEGEITCMAWAPKTIPM 412 (440)
Q Consensus 340 ~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~-----~~~i~i~d~~~~~~-~~~~~~~h~~~v~~v~~~~~~~~~ 412 (440)
....+ ..+..+++....++++++|. +-.|.+||++..+. +..+...|.+.|+++.|+|..+
T Consensus 111 ----------~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p-- 178 (376)
T KOG1188|consen 111 ----------SWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP-- 178 (376)
T ss_pred ----------eccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC--
Confidence 11111 23466777777888998874 56899999998877 7888789999999999999875
Q ss_pred CCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 413 GNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 413 ~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
++|+|||.||.|.|||+...
T Consensus 179 -----nlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 179 -----NLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred -----CeEEeecccceEEeeecCCC
Confidence 89999999999999999754
No 199
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=7e-16 Score=139.75 Aligned_cols=216 Identities=16% Similarity=0.193 Sum_probs=144.2
Q ss_pred CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCcee
Q 013578 112 DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIK 191 (440)
Q Consensus 112 dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (440)
+..|.+||.+.... .....+...+.+.+|+|||+.++.++.+
T Consensus 183 ~~~i~i~d~dg~~~------~~lt~~~~~v~~p~wSPDG~~la~~s~~-------------------------------- 224 (429)
T PRK01742 183 PYEVRVADYDGFNQ------FIVNRSSQPLMSPAWSPDGSKLAYVSFE-------------------------------- 224 (429)
T ss_pred eEEEEEECCCCCCc------eEeccCCCccccceEcCCCCEEEEEEec--------------------------------
Confidence 46899999875432 2223455678899999999877655422
Q ss_pred ecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEe-cC
Q 013578 192 WEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAA-FT 270 (440)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d 270 (440)
..+..|++||+.+++.... .........++|+|||+.|+.+. .+
T Consensus 225 ----------------------------------~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~~La~~~~~~ 269 (429)
T PRK01742 225 ----------------------------------NKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGSRLAFASSKD 269 (429)
T ss_pred ----------------------------------CCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCCEEEEEEecC
Confidence 1234588999987754222 11222345689999999888765 68
Q ss_pred CCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe-CCCcEEEEecCccccccCCCCcccccccccc
Q 013578 271 ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS-KDGTLRVWNINVRYHLDEDPKTLKVLPIPLL 349 (440)
Q Consensus 271 g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 349 (440)
|.+.||.++.... ....+..+...+....|+|||+.|+..+ .++...||+++.... ....+
T Consensus 270 g~~~Iy~~d~~~~-------~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~------~~~~l----- 331 (429)
T PRK01742 270 GVLNIYVMGANGG-------TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG------GASLV----- 331 (429)
T ss_pred CcEEEEEEECCCC-------CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC------CeEEe-----
Confidence 8877776543221 2334555667788999999999877555 678889998763211 00100
Q ss_pred CCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeE
Q 013578 350 DSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKV 429 (440)
Q Consensus 350 ~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i 429 (440)
...+ ...+|+|||++|+......+.+||+.+++..... ..+ ....+.|+|++ ++|+.++.++.+
T Consensus 332 ~~~~-----~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt-~~~--~~~~~~~sPdG--------~~i~~~s~~g~~ 395 (429)
T PRK01742 332 GGRG-----YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLS-STF--LDESPSISPNG--------IMIIYSSTQGLG 395 (429)
T ss_pred cCCC-----CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEec-CCC--CCCCceECCCC--------CEEEEEEcCCCc
Confidence 1111 2478999999998876566777999988754322 122 24568899998 899999999988
Q ss_pred EEEeC
Q 013578 430 KLWLA 434 (440)
Q Consensus 430 ~vw~~ 434 (440)
.+|.+
T Consensus 396 ~~l~~ 400 (429)
T PRK01742 396 KVLQL 400 (429)
T ss_pred eEEEE
Confidence 88875
No 200
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=9.3e-17 Score=123.35 Aligned_cols=175 Identities=17% Similarity=0.280 Sum_probs=129.6
Q ss_pred ccEEEecCCCCeEEEEecCCCEEEEEeEecCCCce--eeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 013578 252 NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLV--KAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNIN 329 (440)
Q Consensus 252 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~ 329 (440)
|..-+++|.+++|++|..+|.|-++.+.....+.. .....+...++|.++|..++|+ ..+|++|+ ||.|+-|..+
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~ 89 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWN 89 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeeh
Confidence 45568999999999999999999999865433222 1223455668999999999997 44666665 5999999877
Q ss_pred ccccccCCCCccccccccccCCCCCeeeeeeEEeCCC-CCEEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEecCC
Q 013578 330 VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD-GKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPK 408 (440)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~ 408 (440)
........ +.......|..........|+++...|. +.++.+|.|+.++-||+++|+....+ ++|++-|.++.--..
T Consensus 90 E~~es~~~-K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~-rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 90 EEEESLAT-KRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREY-RGHTDYVHSVVGRNA 167 (325)
T ss_pred hhhhhccc-hhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEE-cCCcceeeeeeeccc
Confidence 54331111 1111122233333334456889999976 45666788999999999999999998 699999999988444
Q ss_pred CCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 409 TIPMGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 409 ~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
. ..+++|++||++||||..++++
T Consensus 168 ~--------~qilsG~EDGtvRvWd~kt~k~ 190 (325)
T KOG0649|consen 168 N--------GQILSGAEDGTVRVWDTKTQKH 190 (325)
T ss_pred C--------cceeecCCCccEEEEeccccce
Confidence 3 5899999999999999999876
No 201
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=4.4e-14 Score=113.15 Aligned_cols=245 Identities=18% Similarity=0.213 Sum_probs=150.7
Q ss_pred eeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccc
Q 013578 94 VTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKA 173 (440)
Q Consensus 94 V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (440)
...++|+.|...++.|..+| .|||+++.-... .......+.+.-+...-..++++.++....
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~-----~~r~~~~~G~~~veMLfR~N~laLVGGg~~------------ 69 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKES-----ASRQFIDGGFKIVEMLFRSNYLALVGGGSR------------ 69 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhh-----hhhccccCchhhhhHhhhhceEEEecCCCC------------
Confidence 34499999999999988877 899998753221 111111122333333345566666653321
Q ss_pred cccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCC-CCceeeeeeCCCCcc
Q 013578 174 ISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK-TGKLLGNVDTNQLKN 252 (440)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~v 252 (440)
....+...+.|+..+........-......+...++ .++..- .+.|+||... +.+.++.+.....+-
T Consensus 70 --------pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~~et~~NPk 137 (346)
T KOG2111|consen 70 --------PKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPK 137 (346)
T ss_pred --------CCCCCceEEEEecccCcEEEEEEeccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheeeeecccCCC
Confidence 111223334444322222222222222222222222 455544 4459999987 445666654432222
Q ss_pred cEEEecC--CCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCc-EEEEec
Q 013578 253 NMAAISP--NGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGT-LRVWNI 328 (440)
Q Consensus 253 ~~~~~s~--~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~-i~iwd~ 328 (440)
--++..| +..+||.-+ .-|+|+|-|+.....+ ....+.+|.+.|.|++.+-+|..+||+|..|+ |||||.
T Consensus 138 GlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt 211 (346)
T KOG2111|consen 138 GLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN------APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDT 211 (346)
T ss_pred ceEeecCCCCceEEEcCCCccceEEEEEhhhcCcC------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEc
Confidence 2233333 444555433 4699999999765521 24567889999999999999999999999997 899999
Q ss_pred CccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecC-CEEEEEEcCCc
Q 013578 329 NVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHG-STLQWLSVETG 386 (440)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~i~i~d~~~~ 386 (440)
.++..+.+.. .......|.+++|||+..+||+++| |+++||.++..
T Consensus 212 ~~g~~l~E~R------------RG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 212 EDGTLLQELR------------RGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CCCcEeeeee------------cCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 9887765422 2233456899999999999999885 89999987653
No 202
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=1.1e-16 Score=137.20 Aligned_cols=233 Identities=15% Similarity=0.175 Sum_probs=158.4
Q ss_pred CCCCCCCCCCcccCcc------------ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCC-----Cccee
Q 013578 67 SHSHGDKDQNKRHHPL------------DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDAS-----SKSFK 129 (440)
Q Consensus 67 ~~~~~~~~~~~~~~~~------------~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~-----~~~~~ 129 (440)
...+++.++..+.|.+ ++.+|.+|.++|.|+++.+++..+++|+.||+|+.|++.... .....
T Consensus 308 ~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~v 387 (577)
T KOG0642|consen 308 VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSV 387 (577)
T ss_pred eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcch
Confidence 3455566666665554 578999999999999999999999999999999999876221 11223
Q ss_pred eEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccc-cccccccCCCCCCceeecccccccceeEEEeec
Q 013578 130 FLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAIS-TNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFG 208 (440)
Q Consensus 130 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (440)
......+|...|..+++++....|+.++.| ..++.|....... ..........+. ..+....
T Consensus 388 l~~~l~Ghtdavw~l~~s~~~~~Llscs~D---gTvr~w~~~~~~~~~f~~~~e~g~Pl---svd~~ss----------- 450 (577)
T KOG0642|consen 388 LSGTLLGHTDAVWLLALSSTKDRLLSCSSD---GTVRLWEPTEESPCTFGEPKEHGYPL---SVDRTSS----------- 450 (577)
T ss_pred hccceeccccceeeeeecccccceeeecCC---ceEEeeccCCcCccccCCccccCCcc---eEeeccc-----------
Confidence 445677899999999999999999999988 4566665544322 011111111100 0000000
Q ss_pred ccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCC-------CCcccEEEecCCCCeEEEEecCCCEEEEEeEec
Q 013578 209 ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN-------QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYS 281 (440)
Q Consensus 209 ~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 281 (440)
.-. +.++...-+.--++++.....+..+... ...+..+.++|.+.+.+++..|+.|+++|...+
T Consensus 451 --------~~a-~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 451 --------RPA-HSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred --------hhH-hhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 000 1122112222223333333333333211 234667889999999999999999999999877
Q ss_pred CCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCcccc
Q 013578 282 KDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYH 333 (440)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~ 333 (440)
. .++....|...++++++.|+|.+|++++.|+.+++|.+....+
T Consensus 522 ~--------~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 522 K--------ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred c--------cchheeeccceecceeecCCCceEEeecCCceeehhhccchhe
Confidence 6 7888889999999999999999999999999999999875544
No 203
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.72 E-value=3.5e-15 Score=127.49 Aligned_cols=201 Identities=14% Similarity=0.184 Sum_probs=140.0
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeee----CCCCcccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCce---------
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVD----TNQLKNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLV--------- 286 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~----~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~--------- 286 (440)
-++.|-.-|.|.+.|....+..+.+. .....++|+.|-|. ...++++-.+|.+++||....-....
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~ 266 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDG 266 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCC
Confidence 45556666778888876533222221 23467999999884 45666777899999998632110000
Q ss_pred -----------eeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCe
Q 013578 287 -----------KAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGAT 355 (440)
Q Consensus 287 -----------~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (440)
....++..+.--.+.|..++|+|||++||+.++||.+||+|..+...+.... .--
T Consensus 267 ~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk--------------SYF 332 (636)
T KOG2394|consen 267 DQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK--------------SYF 332 (636)
T ss_pred CeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH--------------hhc
Confidence 0001233333345689999999999999999999999999998765432110 111
Q ss_pred eeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCC---------C-------------
Q 013578 356 LQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP---------M------------- 412 (440)
Q Consensus 356 ~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~---------~------------- 412 (440)
....|++|||||+|+++|. |..|.||.+...+.+..- .+|..-|..|+|.|--.. +
T Consensus 333 GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG-qGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~ 411 (636)
T KOG2394|consen 333 GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG-QGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEI 411 (636)
T ss_pred cceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec-cccccceeeEeecccccccccccccccccccccchhccccc
Confidence 2367999999999999976 899999999999999988 599999999999941100 0
Q ss_pred -------CCC-----------cceEEEEeeCCCeEEEEeCCC
Q 013578 413 -------GNQ-----------QVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 413 -------~~~-----------~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
.++ -...+.+.|.|-.+.+||+..
T Consensus 412 r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlte 453 (636)
T KOG2394|consen 412 RANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTE 453 (636)
T ss_pred ccCCCCCcCCCcccccccccceEEEeecccccceEEEEecch
Confidence 001 124688999999999999964
No 204
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.72 E-value=1.3e-16 Score=136.04 Aligned_cols=184 Identities=20% Similarity=0.188 Sum_probs=139.3
Q ss_pred cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC 163 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~ 163 (440)
-+...+|.++|.|-.|+|||.-|+|++.||.|++|.-...- .........+|.|++|.|+...++.+..
T Consensus 97 E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGML------RStl~Q~~~~v~c~~W~p~S~~vl~c~g----- 165 (737)
T KOG1524|consen 97 ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGML------RSTVVQNEESIRCARWAPNSNSIVFCQG----- 165 (737)
T ss_pred hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchH------HHHHhhcCceeEEEEECCCCCceEEecC-----
Confidence 45678999999999999999999999999999999865432 1223344578999999998775544432
Q ss_pred eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee
Q 013578 164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG 243 (440)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 243 (440)
+.+.+=.+.....+.
T Consensus 166 -----------------------------------------------------------------~h~~IKpL~~n~k~i 180 (737)
T KOG1524|consen 166 -----------------------------------------------------------------GHISIKPLAANSKII 180 (737)
T ss_pred -----------------------------------------------------------------CeEEEeeccccccee
Confidence 224444444445556
Q ss_pred eeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcE
Q 013578 244 NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTL 323 (440)
Q Consensus 244 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i 323 (440)
..+.|.+-|.++.|++..+.+++|++|-+.++||-... .+..-..|.-+|++++|.|+ +.++.++.+ +.
T Consensus 181 ~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~---------~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~ 249 (737)
T KOG1524|consen 181 RWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA---------NLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TA 249 (737)
T ss_pred EEeccCcEEEEeecCccccceeecCCceeEEeecccCc---------ccccCChhccceeeeeeccc-cceeeeeee-ee
Confidence 67889999999999999999999999999999995322 56677789999999999999 666777653 55
Q ss_pred EEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEE
Q 013578 324 RVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQ 379 (440)
Q Consensus 324 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~ 379 (440)
|+=..+ ...|..++||+||..+++|. .|.+.
T Consensus 250 R~~~p~-------------------------~GSifnlsWS~DGTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 250 RFSSPR-------------------------VGSIFNLSWSADGTQATCGTSTGQLI 281 (737)
T ss_pred eecCCC-------------------------ccceEEEEEcCCCceeeccccCceEE
Confidence 532222 23477899999999999875 45443
No 205
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=6.4e-15 Score=133.11 Aligned_cols=225 Identities=14% Similarity=0.193 Sum_probs=143.4
Q ss_pred cccccCcceeEEEEccCCCEEEEeeC---CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 86 TLKGHGDSVTGLCFSSDGKCLATACA---DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 86 ~l~~H~~~V~~l~~s~dg~~l~t~s~---dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
.+..+...+.+.+|||||+.|+..+. +..|.+|++.+++.. .+ ....+.+..++|+|||+.|+.....
T Consensus 193 ~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~---~l---~~~~~~~~~~~~SPDG~~La~~~~~--- 263 (429)
T PRK03629 193 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---QV---ASFPRHNGAPAFSPDGSKLAFALSK--- 263 (429)
T ss_pred EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE---Ec---cCCCCCcCCeEECCCCCEEEEEEcC---
Confidence 34455668899999999999987642 456889998765422 11 1122345568899988876644211
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL 242 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 242 (440)
..+..|++||+.+++..
T Consensus 264 ---------------------------------------------------------------~g~~~I~~~d~~tg~~~ 280 (429)
T PRK03629 264 ---------------------------------------------------------------TGSLNLYVMDLASGQIR 280 (429)
T ss_pred ---------------------------------------------------------------CCCcEEEEEECCCCCEE
Confidence 11124888998877654
Q ss_pred eeeeCCCCcccEEEecCCCCeEEEEecC-CCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCC-
Q 013578 243 GNVDTNQLKNNMAAISPNGRFLAAAAFT-ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKD- 320 (440)
Q Consensus 243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d- 320 (440)
.. ..+...+....|+|||+.|+..+.+ +...||.++.... ....+..+........|+|||++|+..+.+
T Consensus 281 ~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g-------~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~ 352 (429)
T PRK03629 281 QV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG-------APQRITWEGSQNQDADVSSDGKFMVMVSSNG 352 (429)
T ss_pred Ec-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC-------CeEEeecCCCCccCEEECCCCCEEEEEEccC
Confidence 43 3334456789999999988877654 5566665543221 122222233445678999999998876543
Q ss_pred --CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CC---EEEEEEcCCccchhhhhc
Q 013578 321 --GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GS---TLQWLSVETGKVLDTAEK 394 (440)
Q Consensus 321 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~---~i~i~d~~~~~~~~~~~~ 394 (440)
..|.+||+.++... .+. . .. ......|+|||++|+.+. ++ .++++++ +|+....+ .
T Consensus 353 g~~~I~~~dl~~g~~~--------~Lt----~-~~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l-~ 414 (429)
T PRK03629 353 GQQHIAKQDLATGGVQ--------VLT----D-TF---LDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARL-P 414 (429)
T ss_pred CCceEEEEECCCCCeE--------EeC----C-CC---CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEEC-c
Confidence 35888898765321 111 0 00 123578999999888754 32 4677777 45555556 4
Q ss_pred cccCCeEEEEecCC
Q 013578 395 AHEGEITCMAWAPK 408 (440)
Q Consensus 395 ~h~~~v~~v~~~~~ 408 (440)
+|.+.+...+|+|-
T Consensus 415 ~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 415 ATDGQVKFPAWSPY 428 (429)
T ss_pred cCCCCcCCcccCCC
Confidence 68888999999983
No 206
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.69 E-value=2.9e-15 Score=121.04 Aligned_cols=298 Identities=14% Similarity=0.204 Sum_probs=172.3
Q ss_pred CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCC------------CCCCceEEEccCCC--eEEEE
Q 013578 91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPP------------GGPPTAVAFADNAT--SIVVA 156 (440)
Q Consensus 91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~------------~~~v~~v~~~~~~~--~l~~~ 156 (440)
.+-|.++.|..+|.+||||..+|.|.++.-.............+..| ...|..+.|.+++. .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 46789999999999999999999999997654432222222222222 24567777777654 33344
Q ss_pred eecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeC
Q 013578 157 THNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHG 236 (440)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~ 236 (440)
+.+ ..+.+|..........+. ...+..... ....-...+.+..+-.+-
T Consensus 105 tNd---ktiKlWKi~er~~k~~~~--------~~~~~~~~~-----------------~~~~lr~p~~~~~~~~ve---- 152 (433)
T KOG1354|consen 105 TND---KTIKLWKIRERGSKKEGY--------NLPEEGPPG-----------------TITSLRLPVEGRHDLEVE---- 152 (433)
T ss_pred cCC---cceeeeeeeccccccccc--------cccccCCCC-----------------ccceeeceeeccccceee----
Confidence 333 334444332221111000 000000000 000000111111111000
Q ss_pred CCCceeeee-eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc-----ccceEEEEEcCC
Q 013578 237 KTGKLLGNV-DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH-----KSAVTWLCFAPN 310 (440)
Q Consensus 237 ~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~p~ 310 (440)
..+.+.+ ..|...+.++.++.|+..++++. |-.|.+|++..... .+ .+..++.+ ..-|++..|+|.
T Consensus 153 --a~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~----sF-nIVDIKP~nmEeLteVITsaEFhp~ 224 (433)
T KOG1354|consen 153 --ASPRRVYANAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQ----SF-NIVDIKPANMEELTEVITSAEFHPH 224 (433)
T ss_pred --eeeeeeccccceeEeeeeeecCccceEeecc-ceeeeeccccccCC----ce-eEEEccccCHHHHHHHHhhhccCHh
Confidence 0111222 35677789999999999998874 78899999865431 11 12233333 346899999994
Q ss_pred -CCEEEEEeCCCcEEEEecCccccccCCCCcccccccc--ccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcC-Cc
Q 013578 311 -SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIP--LLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVE-TG 386 (440)
Q Consensus 311 -~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~-~~ 386 (440)
...|+-.+..|+|++-|++................-+ ......-...|..+.|+++|+|+++-+--+|.+||+. ..
T Consensus 225 ~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~ 304 (433)
T KOG1354|consen 225 HCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA 304 (433)
T ss_pred HccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccC
Confidence 4567777788999999999554332211111111000 0111122345788999999999999999999999993 34
Q ss_pred cchhhhhcccc------------CCe---EEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 387 KVLDTAEKAHE------------GEI---TCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 387 ~~~~~~~~~h~------------~~v---~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
+++..+ ..|. +.| ..++|+.++ .+++||+....++++++..+
T Consensus 305 ~pv~t~-~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~--------~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 305 KPVETY-PVHEYLRSKLCSLYENDAIFDKFECSWSGND--------SYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred CcceEE-eehHhHHHHHHHHhhccchhheeEEEEcCCc--------ceEecccccceEEEecCCCC
Confidence 444433 2332 233 357898887 89999999999999997665
No 207
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=3.6e-14 Score=115.61 Aligned_cols=309 Identities=15% Similarity=0.206 Sum_probs=179.9
Q ss_pred CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCe-EEEEeecCCcceEEeec
Q 013578 91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATS-IVVATHNLSGCSLYMYG 169 (440)
Q Consensus 91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~-l~~~~~~~~~~~~~~~~ 169 (440)
.-.+..++|++.-..+|++..|-+||+|+-..... .......+..|++++|-|.+.. |++++.. .|.+|.
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~p-----t~Lks~sQrnvtclawRPlsaselavgCr~----gIciW~ 168 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP-----TKLKSVSQRNVTCLAWRPLSASELAVGCRA----GICIWS 168 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCC-----ceecchhhcceeEEEeccCCcceeeeeecc----eeEEEE
Confidence 45688899998767788999999999999776322 2233345578999999997654 4555443 455555
Q ss_pred cccccccccccc-cCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEee-CCceEEEEeCCCCceeeeeeC
Q 013578 170 EEKAISTNEGKQ-QSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCS-EGTDISIWHGKTGKLLGNVDT 247 (440)
Q Consensus 170 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~ 247 (440)
............ ...... ..-...+| .....+.+.+||. .+++++ .|..|.+||..++..+.....
T Consensus 169 ~s~tln~~r~~~~~s~~~~---qvl~~pgh--------~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~~pL~~~ 236 (445)
T KOG2139|consen 169 DSRTLNANRNIRMMSTHHL---QVLQDPGH--------NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQKIPLIPK 236 (445)
T ss_pred cCcccccccccccccccch---hheeCCCC--------ceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCccccccc
Confidence 544322211100 000000 00000111 1122233467777 566655 567899999999987766655
Q ss_pred CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN 327 (440)
Q Consensus 248 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd 327 (440)
..+.++-+.|||||.+|++++-|+..++|...... ... ......+.|..-.|+|+|++|+-.+. |.-++|.
T Consensus 237 glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~w-------t~e-rw~lgsgrvqtacWspcGsfLLf~~s-gsp~lys 307 (445)
T KOG2139|consen 237 GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSW-------TKE-RWILGSGRVQTACWSPCGSFLLFACS-GSPRLYS 307 (445)
T ss_pred CCCceeeEEEcCCCCEEEEecccceeeeehhcccc-------eec-ceeccCCceeeeeecCCCCEEEEEEc-CCceEEE
Confidence 56678899999999999999999999999653222 111 12223458999999999997654432 3445555
Q ss_pred cCccccccCC--CCcccc----ccccccCC----CCCeeeeeeEEeCCCCCEEEEecC---------CEEEEEEcCCccc
Q 013578 328 INVRYHLDED--PKTLKV----LPIPLLDS----NGATLQYDRLSLSSDGKILAATHG---------STLQWLSVETGKV 388 (440)
Q Consensus 328 ~~~~~~~~~~--~~~~~~----~~~~~~~~----~~~~~~v~~~~~s~~g~~l~~~~~---------~~i~i~d~~~~~~ 388 (440)
+......... +...+. ..++.... ..-..+..+++|.|.|.+||+... ..|.+||....-.
T Consensus 308 l~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~ 387 (445)
T KOG2139|consen 308 LTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPP 387 (445)
T ss_pred EeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCc
Confidence 4422111110 011000 01111111 111345678999999999998542 3456676654433
Q ss_pred hhhhhcc--ccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578 389 LDTAEKA--HEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA 434 (440)
Q Consensus 389 ~~~~~~~--h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~ 434 (440)
+.-..-+ .......+.|+|-. .++.+|..+=+.|.+.-|.+
T Consensus 388 vels~cg~i~ge~P~~IsF~pl~-----n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 388 VELSYCGMIGGEYPAYISFGPLK-----NEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred eEEEecccccCCCCceEEeeecc-----cCCcEEEEEeccCceEeeee
Confidence 2211000 11225566777654 34467777777888877765
No 208
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.68 E-value=3.7e-15 Score=120.45 Aligned_cols=337 Identities=17% Similarity=0.194 Sum_probs=197.6
Q ss_pred CccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeec
Q 013578 80 HPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHN 159 (440)
Q Consensus 80 ~~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~ 159 (440)
.+..++.++||.+.|+....-|...-+++.+.|.++|||--.+. ...++.+. .....+++++.+.++...|+++-.+
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds-~q~wpsI~--~~mP~~~~~~~y~~e~~~L~vg~~n 89 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDS-GQYWPSIY--HYMPSPCSAMEYVSESRRLYVGQDN 89 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccc-cccCchhh--hhCCCCceEeeeeccceEEEEEEec
Confidence 34467889999999999999998888999999999999964332 22222222 2233778999999999999988877
Q ss_pred CCcceEEeeccccccccccccc------cCCCCCCceeecccccccceeEEEeeccccc------ccCCCCCe----EEE
Q 013578 160 LSGCSLYMYGEEKAISTNEGKQ------QSKLPGPEIKWEHHKVHDKRAILTLFGASAT------YGTADGST----IIA 223 (440)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~----~l~ 223 (440)
+......+...-+......... ...+......|-....+++............ ...+.... +.+
T Consensus 90 gtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~f 169 (404)
T KOG1409|consen 90 GTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAF 169 (404)
T ss_pred ceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEE
Confidence 6555544433322211100000 0001111112222222222222221110000 00000000 223
Q ss_pred EeeCCceEEEEeC--CCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccc
Q 013578 224 SCSEGTDISIWHG--KTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSA 301 (440)
Q Consensus 224 s~~~d~~i~vwd~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~ 301 (440)
.|...|.|....+ ..-..+.++.+|...+.+++|.+....|++|..|..+.+||+...+ .....+.+|...
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~-------g~~~el~gh~~k 242 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK-------GTAYELQGHNDK 242 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc-------ceeeeeccchhh
Confidence 3333444444332 3345677888999999999999999999999999999999996554 246678899999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCcc-------cc-------------ccccccCCCCCeeeeeeE
Q 013578 302 VTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTL-------KV-------------LPIPLLDSNGATLQYDRL 361 (440)
Q Consensus 302 v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~~-------------~~~~~~~~~~~~~~v~~~ 361 (440)
|..+...+--+.+++++.||.|.+|+++........-... +. +.+..+....-...+...
T Consensus 243 V~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~ 322 (404)
T KOG1409|consen 243 VQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGK 322 (404)
T ss_pred hhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcc
Confidence 9999988888899999999999999998543321100000 00 000000000000111111
Q ss_pred EeCCCCCEEEEecCCEEEEEEcCCc-------cchhhhhcccc--CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEE
Q 013578 362 SLSSDGKILAATHGSTLQWLSVETG-------KVLDTAEKAHE--GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432 (440)
Q Consensus 362 ~~s~~g~~l~~~~~~~i~i~d~~~~-------~~~~~~~~~h~--~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw 432 (440)
+-+....+...|.+-.+++.|.--. ..+.. .|+ ..|+.+.+..+- .+|+|+|.|..|+||
T Consensus 323 c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~---phei~tgItamhlqetl--------glLvTsG~~Rvi~iw 391 (404)
T KOG1409|consen 323 CSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAI---PHEIKTGITAMHLQETL--------GLLVTSGTDRVIKIW 391 (404)
T ss_pred cccCccccccccceeEEEEecccchhhhcCCCCcccc---ccccccceeEEEhhhhc--------cceeecCCceEEEEE
Confidence 1122222333444555666553211 12332 243 369999998886 799999999999999
Q ss_pred eCCCC
Q 013578 433 LAPSL 437 (440)
Q Consensus 433 ~~~~~ 437 (440)
|+++.
T Consensus 392 d~~~v 396 (404)
T KOG1409|consen 392 DVRSV 396 (404)
T ss_pred echhh
Confidence 99763
No 209
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.67 E-value=3.4e-15 Score=130.97 Aligned_cols=233 Identities=19% Similarity=0.293 Sum_probs=171.3
Q ss_pred ceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccc
Q 013578 93 SVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEK 172 (440)
Q Consensus 93 ~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 172 (440)
.|..++|-|||..|+.+..| .+-+||.+.+. .+....+|...|.+++|+.||+
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~-----llqtLKgHKDtVycVAys~dGk--------------------- 66 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGT-----LLQPLKGHKDTVYCVAYAKDGK--------------------- 66 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcc-----cccccccccceEEEEEEccCCc---------------------
Confidence 89999999999988887655 68999999876 4567778999999999988876
Q ss_pred ccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcc
Q 013578 173 AISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN 252 (440)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v 252 (440)
.+++|+.|..|.+|+.+-...+ . ..|...|
T Consensus 67 ------------------------------------------------rFASG~aDK~VI~W~~klEG~L-k-YSH~D~I 96 (1081)
T KOG1538|consen 67 ------------------------------------------------RFASGSADKSVIIWTSKLEGIL-K-YSHNDAI 96 (1081)
T ss_pred ------------------------------------------------eeccCCCceeEEEeccccccee-e-eccCCee
Confidence 6788888999999986532222 2 2578899
Q ss_pred cEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccc
Q 013578 253 NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRY 332 (440)
Q Consensus 253 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~ 332 (440)
.|+.|+|-...|++++-+ ..-+|...... +...+ ....|.+.+|..||.+|+.|-.||+|.+-+-....
T Consensus 97 QCMsFNP~~h~LasCsLs-dFglWS~~qK~---------V~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEe 165 (1081)
T KOG1538|consen 97 QCMSFNPITHQLASCSLS-DFGLWSPEQKS---------VSKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEE 165 (1081)
T ss_pred eEeecCchHHHhhhcchh-hccccChhhhh---------HHhhh-hheeEEEeeecCCCcEEEEeccCceEEeecCCCCc
Confidence 999999999999998754 45677753221 21111 34568899999999999999999999987543211
Q ss_pred cccCCCCccccccccccCCCCCeeeeeeEEeCCCC-----CEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEec
Q 013578 333 HLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG-----KILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWA 406 (440)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-----~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~ 406 (440)
...+....+...+|.+++|+|.. ..+++.+ +.++.+|.+. |+.+..- +.-.-...|+.+.
T Consensus 166 ------------k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~-r~L~FdP~CisYf 231 (1081)
T KOG1538|consen 166 ------------KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKD-RALNFDPCCISYF 231 (1081)
T ss_pred ------------ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeeccc-ccCCCCchhheec
Confidence 11233345667789999999973 3666665 6777777664 4443321 1223346789999
Q ss_pred CCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 407 PKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 407 ~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
++| .+++.||.|+.+++|.-+
T Consensus 232 ~NG--------Ey~LiGGsdk~L~~fTR~ 252 (1081)
T KOG1538|consen 232 TNG--------EYILLGGSDKQLSLFTRD 252 (1081)
T ss_pred cCC--------cEEEEccCCCceEEEeec
Confidence 998 899999999999998654
No 210
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=3.1e-14 Score=129.33 Aligned_cols=226 Identities=16% Similarity=0.244 Sum_probs=141.6
Q ss_pred cccccccCcceeEEEEccCCCEEEEeeCC---CcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecC
Q 013578 84 VNTLKGHGDSVTGLCFSSDGKCLATACAD---GVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL 160 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~d---g~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~ 160 (440)
.+.+..|...+.+.+|+|||+.|+..+.+ ..|.+|++.++... .+ ....+...+.+|+|+|+.++.....
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~---~l---~~~~g~~~~~~~SpDG~~l~~~~s~- 268 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE---LV---ASFRGINGAPSFSPDGRRLALTLSR- 268 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE---Ee---ccCCCCccCceECCCCCEEEEEEeC-
Confidence 34566677889999999999999988743 46999999766432 11 1222345577888888766543211
Q ss_pred CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc
Q 013578 161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK 240 (440)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 240 (440)
..+..|++||+.+++
T Consensus 269 -----------------------------------------------------------------~g~~~Iy~~d~~~g~ 283 (433)
T PRK04922 269 -----------------------------------------------------------------DGNPEIYVMDLGSRQ 283 (433)
T ss_pred -----------------------------------------------------------------CCCceEEEEECCCCC
Confidence 112358889988776
Q ss_pred eeeeeeCCCCcccEEEecCCCCeEEEEec-CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC
Q 013578 241 LLGNVDTNQLKNNMAAISPNGRFLAAAAF-TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK 319 (440)
Q Consensus 241 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~ 319 (440)
.. .+..+.......+|+|||+.|+..+. +|...+|.+.... + ....+..+.......+|+|+|++|+..+.
T Consensus 284 ~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~-g------~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~ 355 (433)
T PRK04922 284 LT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG-G------SAERLTFQGNYNARASVSPDGKKIAMVHG 355 (433)
T ss_pred eE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-C------CeEEeecCCCCccCEEECCCCCEEEEEEC
Confidence 53 34444444567899999998887764 5554555443221 1 11112222234457899999999887654
Q ss_pred CC---cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec----CCEEEEEEcCCccchhhh
Q 013578 320 DG---TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH----GSTLQWLSVETGKVLDTA 392 (440)
Q Consensus 320 dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----~~~i~i~d~~~~~~~~~~ 392 (440)
++ .|.+||+.++... .+ .. .. ......|+|||++++... .+.|++++... .....+
T Consensus 356 ~~~~~~I~v~d~~~g~~~--------~L----t~-~~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l 418 (433)
T PRK04922 356 SGGQYRIAVMDLSTGSVR--------TL----TP-GS---LDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRL 418 (433)
T ss_pred CCCceeEEEEECCCCCeE--------EC----CC-CC---CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEc
Confidence 43 5899998765321 11 00 00 123478999999877643 24688888854 444444
Q ss_pred hccccCCeEEEEecC
Q 013578 393 EKAHEGEITCMAWAP 407 (440)
Q Consensus 393 ~~~h~~~v~~v~~~~ 407 (440)
..+.+.+...+|+|
T Consensus 419 -~~~~g~~~~p~wsp 432 (433)
T PRK04922 419 -VSADGEVREPAWSP 432 (433)
T ss_pred -ccCCCCCCCCccCC
Confidence 24567788888887
No 211
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.66 E-value=1.3e-14 Score=116.22 Aligned_cols=193 Identities=13% Similarity=0.145 Sum_probs=147.1
Q ss_pred EEEEeeCCceEEEEeCCCC---ceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec
Q 013578 221 IIASCSEGTDISIWHGKTG---KLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG 297 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 297 (440)
.++.+.....|.||..... +..+++..|...++++.|+|..+.|++++.|..-++|....+ ..+.+...+..
T Consensus 24 ~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~-----~~WkptlvLlR 98 (361)
T KOG1523|consen 24 QIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG-----GTWKPTLVLLR 98 (361)
T ss_pred eEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC-----CeeccceeEEE
Confidence 4555566666778776543 467888999999999999999999999999999999997533 23445556667
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CC
Q 013578 298 HKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GS 376 (440)
Q Consensus 298 h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~ 376 (440)
+....+++.|+|.++.||+|+.-..|.||-++....-. ...+........|.+++|+|++-+|++|+ |+
T Consensus 99 iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWW----------VsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 99 INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWW----------VSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eccceeeEeecCcCceEEeccCccEEEEEEEeccccee----------hhhhhCCccccceeeeeccCCcceecccccCc
Confidence 88999999999999999999999999999887432110 01111223345689999999999999987 99
Q ss_pred EEEEEEc-----CC-------------ccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 377 TLQWLSV-----ET-------------GKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 377 ~i~i~d~-----~~-------------~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
..++|.. ++ |++..++ ....+-|..+.|+|.| ..|+-.+.|+.+.+=|....
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~-~~~ggwvh~v~fs~sG--------~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA-SSSGGWVHGVLFSPSG--------NRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh-ccCCCceeeeEeCCCC--------CEeeEecCCCceEEeecCCC
Confidence 8888854 11 2233333 2456789999999999 89999999999998887655
No 212
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=1.5e-14 Score=133.32 Aligned_cols=257 Identities=18% Similarity=0.191 Sum_probs=164.8
Q ss_pred CcceeEEEEcc--CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCC-------CCCCCceEEEccCCCeEEEEeecCC
Q 013578 91 GDSVTGLCFSS--DGKCLATACADGVIRVHKLDDASSKSFKFLRINLP-------PGGPPTAVAFADNATSIVVATHNLS 161 (440)
Q Consensus 91 ~~~V~~l~~s~--dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~-------~~~~v~~v~~~~~~~~l~~~~~~~~ 161 (440)
...|+.+.+-. |..++++|+.||.||||+-........+......+ ..+.-.-+.|.....+|++++.
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd--- 1185 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD--- 1185 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC---
Confidence 45688888875 55789999999999999854332111122221111 1111245677777777776654
Q ss_pred cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc-
Q 013578 162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK- 240 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~- 240 (440)
...+.+|+..+........... ...+... ......|+ ++++|..||.|++||.+...
T Consensus 1186 ~r~IRIWDa~~E~~~~diP~~s----------------~t~vTaL-----S~~~~~gn-~i~AGfaDGsvRvyD~R~a~~ 1243 (1387)
T KOG1517|consen 1186 VRSIRIWDAHKEQVVADIPYGS----------------STLVTAL-----SADLVHGN-IIAAGFADGSVRVYDRRMAPP 1243 (1387)
T ss_pred eeEEEEEecccceeEeecccCC----------------Cccceee-----cccccCCc-eEEEeecCCceEEeecccCCc
Confidence 4688888877653222111100 0000000 01122344 89999999999999987543
Q ss_pred --eeeeeeCCCCc--ccEEEecCCCCe-EEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccc--c-ceEEEEEcCCCC
Q 013578 241 --LLGNVDTNQLK--NNMAAISPNGRF-LAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK--S-AVTWLCFAPNSE 312 (440)
Q Consensus 241 --~~~~~~~~~~~--v~~~~~s~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~--~-~v~~~~~~p~~~ 312 (440)
.+..++.|+.. |..+.+.+.|-. |++|+.||.|++||++..... .......|. + ..+++..|+...
T Consensus 1244 ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e------~~~~iv~~~~yGs~lTal~VH~hap 1317 (1387)
T KOG1517|consen 1244 DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE------TFLTIVAHWEYGSALTALTVHEHAP 1317 (1387)
T ss_pred cccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccc------ccceeeeccccCccceeeeeccCCC
Confidence 45666677766 888888887654 999999999999999874211 111222222 3 589999999999
Q ss_pred EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCcc
Q 013578 313 QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGK 387 (440)
Q Consensus 313 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~ 387 (440)
.+|+|+. +.|+||++...... ..+..+... ......+.+++|+|-.-++|+|. |..|.||.....+
T Consensus 1318 iiAsGs~-q~ikIy~~~G~~l~-----~~k~n~~F~---~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1318 IIASGSA-QLIKIYSLSGEQLN-----IIKYNPGFM---GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred eeeecCc-ceEEEEecChhhhc-----ccccCcccc---cCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 9999998 89999999754321 111111111 12233468999999999999987 8999999876554
No 213
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=5.8e-14 Score=127.80 Aligned_cols=224 Identities=13% Similarity=0.154 Sum_probs=143.5
Q ss_pred cccccccCcceeEEEEccCCCEEEEeeC---CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecC
Q 013578 84 VNTLKGHGDSVTGLCFSSDGKCLATACA---DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL 160 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~---dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~ 160 (440)
.+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.++... ......+.+...+|+|||+.++.....
T Consensus 194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~------~l~~~~g~~~~~~~SPDG~~la~~~~~- 266 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE------LVGNFPGMTFAPRFSPDGRKVVMSLSQ- 266 (435)
T ss_pred cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE------EeecCCCcccCcEECCCCCEEEEEEec-
Confidence 3456678889999999999999988764 468999999876432 112233556778888888876543211
Q ss_pred CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc
Q 013578 161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK 240 (440)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 240 (440)
.....|++||+.+++
T Consensus 267 -----------------------------------------------------------------~g~~~Iy~~d~~~~~ 281 (435)
T PRK05137 267 -----------------------------------------------------------------GGNTDIYTMDLRSGT 281 (435)
T ss_pred -----------------------------------------------------------------CCCceEEEEECCCCc
Confidence 012347778887765
Q ss_pred eeeeeeCCCCcccEEEecCCCCeEEEEec-CC--CEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEE
Q 013578 241 LLGNVDTNQLKNNMAAISPNGRFLAAAAF-TA--DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA 317 (440)
Q Consensus 241 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~ 317 (440)
. ..+..+........|+|||+.|+..+. +| .|+++|+..+. ...+..+...+....|+|+|++|+..
T Consensus 282 ~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~---------~~~lt~~~~~~~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 282 T-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN---------PRRISFGGGRYSTPVWSPRGDLIAFT 351 (435)
T ss_pred e-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC---------eEEeecCCCcccCeEECCCCCEEEEE
Confidence 5 334444555667899999999887764 44 46666654322 22232234556778999999999877
Q ss_pred eCC---CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--C-----CEEEEEEcCCcc
Q 013578 318 SKD---GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--G-----STLQWLSVETGK 387 (440)
Q Consensus 318 ~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~-----~~i~i~d~~~~~ 387 (440)
+.+ ..|.+||+.++.. +.+. .. ..+...+|+|||+.|+... . ..++++|+..+.
T Consensus 352 ~~~~~~~~i~~~d~~~~~~--------~~lt-----~~---~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 352 KQGGGQFSIGVMKPDGSGE--------RILT-----SG---FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred EcCCCceEEEEEECCCCce--------Eecc-----CC---CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 643 2577788754321 1110 01 1245689999999887632 1 368888887665
Q ss_pred chhhhhccccCCeEEEEecCC
Q 013578 388 VLDTAEKAHEGEITCMAWAPK 408 (440)
Q Consensus 388 ~~~~~~~~h~~~v~~v~~~~~ 408 (440)
. ..+. ..+.+...+|+|-
T Consensus 416 ~-~~l~--~~~~~~~p~Wsp~ 433 (435)
T PRK05137 416 E-REVP--TPGDASDPAWSPL 433 (435)
T ss_pred e-EEcc--CCCCccCcccCCC
Confidence 4 3332 3445777888874
No 214
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=6.4e-14 Score=126.86 Aligned_cols=224 Identities=18% Similarity=0.250 Sum_probs=140.4
Q ss_pred ccccccCcceeEEEEccCCCEEEEeeCC---CcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578 85 NTLKGHGDSVTGLCFSSDGKCLATACAD---GVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS 161 (440)
Q Consensus 85 ~~l~~H~~~V~~l~~s~dg~~l~t~s~d---g~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~ 161 (440)
+.+..|.+.+.+.+|+|||+.|+..+.+ ..|.+||+.++... .+ ....+.....+|+|||+.++...
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~---~l---~~~~g~~~~~~~SPDG~~la~~~---- 258 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR---VV---ANFKGSNSAPAWSPDGRTLAVAL---- 258 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE---Ee---ecCCCCccceEECCCCCEEEEEE----
Confidence 3455677889999999999999887643 35999999876432 11 11224456788888887665432
Q ss_pred cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCce--EEEEeCCCC
Q 013578 162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTD--ISIWHGKTG 239 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~--i~vwd~~~~ 239 (440)
+.++. |+++|+..+
T Consensus 259 ----------------------------------------------------------------~~~g~~~Iy~~d~~~~ 274 (427)
T PRK02889 259 ----------------------------------------------------------------SRDGNSQIYTVNADGS 274 (427)
T ss_pred ----------------------------------------------------------------ccCCCceEEEEECCCC
Confidence 22222 444555544
Q ss_pred ceeeeeeCCCCcccEEEecCCCCeEEEEec-CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe
Q 013578 240 KLLGNVDTNQLKNNMAAISPNGRFLAAAAF-TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS 318 (440)
Q Consensus 240 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~ 318 (440)
. ...+..+........|+|||+.|+..+. +|...+|.+..... . ...+..+.......+|+|+|++|+..+
T Consensus 275 ~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g-~------~~~lt~~g~~~~~~~~SpDG~~Ia~~s 346 (427)
T PRK02889 275 G-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG-A------AQRVTFTGSYNTSPRISPDGKLLAYIS 346 (427)
T ss_pred C-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC-c------eEEEecCCCCcCceEECCCCCEEEEEE
Confidence 4 3444444444567889999998887664 56778887753321 1 111111223344678999999998777
Q ss_pred CCC---cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--C--CEEEEEEcCCccchhh
Q 013578 319 KDG---TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--G--STLQWLSVETGKVLDT 391 (440)
Q Consensus 319 ~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~--~~i~i~d~~~~~~~~~ 391 (440)
.++ .|.+||+.++... .+ .. .. ......|+|||+.|+.+. + ..+++.+. +|+....
T Consensus 347 ~~~g~~~I~v~d~~~g~~~--------~l----t~-~~---~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~ 409 (427)
T PRK02889 347 RVGGAFKLYVQDLATGQVT--------AL----TD-TT---RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQR 409 (427)
T ss_pred ccCCcEEEEEEECCCCCeE--------Ec----cC-CC---CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEE
Confidence 554 5999998765321 00 00 00 124589999999888754 2 34666676 4555555
Q ss_pred hhccccCCeEEEEecCC
Q 013578 392 AEKAHEGEITCMAWAPK 408 (440)
Q Consensus 392 ~~~~h~~~v~~v~~~~~ 408 (440)
+ ..+.+.+...+|+|-
T Consensus 410 l-~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 410 L-SVQGGDVREPSWGPF 425 (427)
T ss_pred e-ecCCCCCCCCccCCC
Confidence 5 356778888899884
No 215
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.64 E-value=5.4e-15 Score=126.37 Aligned_cols=197 Identities=20% Similarity=0.238 Sum_probs=125.7
Q ss_pred cCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccccccccccc
Q 013578 101 SDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGK 180 (440)
Q Consensus 101 ~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (440)
|++--|+.|=.-|.|.+.|....+... .+-....-....|+++.|.|.+..++++.... ..+++++...........
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sk-lfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~s--Gnlyly~~~~~~~~t~p~ 259 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSK-LFNEERLINKSSVTCIKWVPGSDSLFLVAHAS--GNLYLYDKEIVCGATAPS 259 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHH-hhhhcccccccceEEEEEEeCCCceEEEEEec--CceEEeeccccccCCCCc
Confidence 345556666666777777755421110 00011111237899999999888777776653 345555443222111111
Q ss_pred ccCCCCCCc---eeeccccc--ccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEE
Q 013578 181 QQSKLPGPE---IKWEHHKV--HDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMA 255 (440)
Q Consensus 181 ~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 255 (440)
......... ..|..... ...+...........++++||+ +|++.+.||.+||||..+.+.+..++.--+...|+
T Consensus 260 ~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCv 338 (636)
T KOG2394|consen 260 YQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCV 338 (636)
T ss_pred ccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCc-eEEEEecCceEEEeeccHHHHHHHHHhhccceEEE
Confidence 110000000 01111111 0011112222445567789999 99999999999999999988887777767789999
Q ss_pred EecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC
Q 013578 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP 309 (440)
Q Consensus 256 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p 309 (440)
+|||||++|++|++|--|.||.+...+ .+..-++|+++|..++|.|
T Consensus 339 cWSPDGKyIvtGGEDDLVtVwSf~erR--------VVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 339 CWSPDGKYIVTGGEDDLVTVWSFEERR--------VVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEcCCccEEEecCCcceEEEEEeccce--------EEEeccccccceeeEeecc
Confidence 999999999999999999999996655 7888899999999999983
No 216
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=3.1e-14 Score=117.10 Aligned_cols=222 Identities=16% Similarity=0.220 Sum_probs=161.4
Q ss_pred ccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEE
Q 013578 87 LKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLY 166 (440)
Q Consensus 87 l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~ 166 (440)
..+-+++|..++.. || .|++|-.+|.+.+|....+.......... ..+.++..+.-++...++++.+.......+.
T Consensus 101 ~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss~l~~l--a~g~g~~~~r~~~~~p~Iva~GGke~~n~lk 176 (412)
T KOG3881|consen 101 VSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKL--ATGPGLYDVRQTDTDPYIVATGGKENINELK 176 (412)
T ss_pred cccccccccchhhc-CC-EEEEEecCCcEEEEeccCCccccccceee--ecCCceeeeccCCCCCceEecCchhccccee
Confidence 34456677777765 33 78888999999999998654322222222 2336778888888888888877665567788
Q ss_pred eecccccccccccccc--CCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC-ceee
Q 013578 167 MYGEEKAISTNEGKQQ--SKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG-KLLG 243 (440)
Q Consensus 167 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~ 243 (440)
+|+.+........+.. ..+....-.|.. ...+..++..+.|++++.-+.|++||.+.+ +++.
T Consensus 177 iwdle~~~qiw~aKNvpnD~L~LrVPvW~t---------------di~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~ 241 (412)
T KOG3881|consen 177 IWDLEQSKQIWSAKNVPNDRLGLRVPVWIT---------------DIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVA 241 (412)
T ss_pred eeecccceeeeeccCCCCccccceeeeeec---------------cceecCCCCCceEEEEecceeEEEecCcccCccee
Confidence 8888776444333321 111112222221 111112222458999999999999999865 5788
Q ss_pred eeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcE
Q 013578 244 NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTL 323 (440)
Q Consensus 244 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i 323 (440)
.+...+.+++++...|+++++++|...|.+..||++.+. .....+++..+.|++|..+|.+++|++++-|..|
T Consensus 242 ~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k-------l~g~~~kg~tGsirsih~hp~~~~las~GLDRyv 314 (412)
T KOG3881|consen 242 QFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK-------LLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYV 314 (412)
T ss_pred EeccccCcceeeeecCCCcEEEEecccchhheecccCce-------eeccccCCccCCcceEEEcCCCceEEeeccceeE
Confidence 888889999999999999999999999999999998776 1334488889999999999999999999999999
Q ss_pred EEEecCccccc
Q 013578 324 RVWNINVRYHL 334 (440)
Q Consensus 324 ~iwd~~~~~~~ 334 (440)
||+|+.+...+
T Consensus 315 RIhD~ktrkll 325 (412)
T KOG3881|consen 315 RIHDIKTRKLL 325 (412)
T ss_pred EEeecccchhh
Confidence 99999985543
No 217
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=3.9e-14 Score=116.62 Aligned_cols=274 Identities=11% Similarity=0.141 Sum_probs=178.0
Q ss_pred CCCCCCCCCCcccCcc----------ccccccc-cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecC
Q 013578 67 SHSHGDKDQNKRHHPL----------DVNTLKG-HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINL 135 (440)
Q Consensus 67 ~~~~~~~~~~~~~~~~----------~~~~l~~-H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~ 135 (440)
-.+++..|...++|.. ++..... |...|.|++|....++|.+|+.+++|.+-|+++.+.. ......
T Consensus 70 ~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi---~V~~~~ 146 (609)
T KOG4227|consen 70 FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSI---YVANEN 146 (609)
T ss_pred EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceee---eeeccc
Confidence 3466777777777743 3443333 5689999999999999999999999999999876421 111111
Q ss_pred CCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccC
Q 013578 136 PPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGT 215 (440)
Q Consensus 136 ~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (440)
...+.|+.+..+|..
T Consensus 147 ~~~~~VY~m~~~P~D----------------------------------------------------------------- 161 (609)
T KOG4227|consen 147 NNRGDVYHMDQHPTD----------------------------------------------------------------- 161 (609)
T ss_pred CcccceeecccCCCC-----------------------------------------------------------------
Confidence 112345554444432
Q ss_pred CCCCeEEEEeeCCceEEEEeCCCCc-ee--eeeeCCCCcccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCceeeeee
Q 013578 216 ADGSTIIASCSEGTDISIWHGKTGK-LL--GNVDTNQLKNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLVKAVTS 291 (440)
Q Consensus 216 ~~~~~~l~s~~~d~~i~vwd~~~~~-~~--~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 291 (440)
. .+++.+.++.|.+||.+... .. ..+.........+.|+|. ..+|++.+..+-+-+||.+....... .
T Consensus 162 ---N-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~----~ 233 (609)
T KOG4227|consen 162 ---N-TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVY----Q 233 (609)
T ss_pred ---c-eEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHH----h
Confidence 2 67888889999999988654 21 112222344567788985 56788888899999999976542110 1
Q ss_pred eeeeeccc---cceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCcccccccc-ccCCCCCeeeeeeEEeCCCC
Q 013578 292 VMQLKGHK---SAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIP-LLDSNGATLQYDRLSLSSDG 367 (440)
Q Consensus 292 ~~~~~~h~---~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~g 367 (440)
...+.+.. ..-.++.|+|+|..|.+.-....-.+||+-...+.. +... -.......+.+.+++|.-|-
T Consensus 234 ~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V--------~k~D~N~~GY~N~~T~KS~~F~~D~ 305 (609)
T KOG4227|consen 234 RSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFV--------LKSDHNPNGYCNIKTIKSMTFIDDY 305 (609)
T ss_pred hhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccccee--------EeccCCCCcceeeeeeeeeeeecce
Confidence 11111211 223578899999999887766666778887543321 0000 00011234456778887776
Q ss_pred CEEEEec-CCEEEEEEcCCc----------c-------------chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEe
Q 013578 368 KILAATH-GSTLQWLSVETG----------K-------------VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATS 423 (440)
Q Consensus 368 ~~l~~~~-~~~i~i~d~~~~----------~-------------~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~ 423 (440)
. +++|+ +=.|++|.+... . .+..+ ++|..-++.|.|+|.. .+|++.
T Consensus 306 ~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VL-rGHRSv~NQVRF~~H~--------~~l~SS 375 (609)
T KOG4227|consen 306 T-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVL-RGHRSVPNQVRFSQHN--------NLLVSS 375 (609)
T ss_pred e-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEE-ecccccccceeecCCc--------ceEecc
Confidence 6 66666 568999976321 1 11122 6899999999999997 789999
Q ss_pred eCCCeEEEEeC
Q 013578 424 SVDKKVKLWLA 434 (440)
Q Consensus 424 ~~Dg~i~vw~~ 434 (440)
|-...+++|.-
T Consensus 376 GVE~~~KlWS~ 386 (609)
T KOG4227|consen 376 GVENSFKLWSD 386 (609)
T ss_pred chhhheecccc
Confidence 99999999974
No 218
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.63 E-value=5e-14 Score=112.02 Aligned_cols=154 Identities=25% Similarity=0.445 Sum_probs=108.2
Q ss_pred eEEEEccCCCEEEEeeC----------CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcce
Q 013578 95 TGLCFSSDGKCLATACA----------DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCS 164 (440)
Q Consensus 95 ~~l~~s~dg~~l~t~s~----------dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~ 164 (440)
-.+.|+|+|++|+.-.. -|...+|.++..... .........++|.+++|+|+++.++++
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~---~~~i~l~~~~~I~~~~WsP~g~~favi-------- 77 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP---VESIELKKEGPIHDVAWSPNGNEFAVI-------- 77 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc---cceeeccCCCceEEEEECcCCCEEEEE--------
Confidence 35789999987765332 244667777543322 222233344679999999998865433
Q ss_pred EEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeee
Q 013578 165 LYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN 244 (440)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 244 (440)
.|..++.|.+||++ ++.+..
T Consensus 78 -----------------------------------------------------------~g~~~~~v~lyd~~-~~~i~~ 97 (194)
T PF08662_consen 78 -----------------------------------------------------------YGSMPAKVTLYDVK-GKKIFS 97 (194)
T ss_pred -----------------------------------------------------------EccCCcccEEEcCc-ccEeEe
Confidence 34445679999996 666666
Q ss_pred eeCCCCcccEEEecCCCCeEEEEec---CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC--
Q 013578 245 VDTNQLKNNMAAISPNGRFLAAAAF---TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK-- 319 (440)
Q Consensus 245 ~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~-- 319 (440)
+. ...+..+.|+|+|++|++++. .|.|.+||++..+ .+.... | ..++.++|+|+|++|+++..
T Consensus 98 ~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~--------~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~ 165 (194)
T PF08662_consen 98 FG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK--------KISTFE-H-SDATDVEWSPDGRYLATATTSP 165 (194)
T ss_pred ec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE--------Eeeccc-c-CcEEEEEEcCCCCEEEEEEecc
Confidence 64 456788999999999999874 4679999997443 344332 3 34789999999999998864
Q ss_pred ----CCcEEEEecCcc
Q 013578 320 ----DGTLRVWNINVR 331 (440)
Q Consensus 320 ----dg~i~iwd~~~~ 331 (440)
|..++||+....
T Consensus 166 r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 166 RLRVDNGFKIWSFQGR 181 (194)
T ss_pred ceeccccEEEEEecCe
Confidence 788999998643
No 219
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=5.5e-14 Score=115.69 Aligned_cols=187 Identities=18% Similarity=0.279 Sum_probs=141.1
Q ss_pred EEEEeeCCceEEEEeCCCCc----eeeeeeCCCCcccEEEecCC-CCeEEEEecC--CCEEEEEeEecCCCceeeeeeee
Q 013578 221 IIASCSEGTDISIWHGKTGK----LLGNVDTNQLKNNMAAISPN-GRFLAAAAFT--ADVKVWEIVYSKDGLVKAVTSVM 293 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~----~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~ 293 (440)
.|++|-.+|.+.+|..+.+. .+..+..+ ..+..+.-++. ..++++|+.. ..+.+||+...+ .+.
T Consensus 117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~--------qiw 187 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK--------QIW 187 (412)
T ss_pred EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccce--------eee
Confidence 68889999999999988543 23333333 23444554554 4556668888 789999986553 111
Q ss_pred eee-------c--cccceEEEEEcCC--CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEE
Q 013578 294 QLK-------G--HKSAVTWLCFAPN--SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS 362 (440)
Q Consensus 294 ~~~-------~--h~~~v~~~~~~p~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 362 (440)
.-+ + -.-+++++.|-|. ...|++++.-+.|++||.+.++. |+....-....++++.
T Consensus 188 ~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR-------------PV~~fd~~E~~is~~~ 254 (412)
T KOG3881|consen 188 SAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR-------------PVAQFDFLENPISSTG 254 (412)
T ss_pred eccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc-------------ceeEeccccCcceeee
Confidence 111 1 1235778999887 78899999999999999985533 1222223355688999
Q ss_pred eCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 363 LSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 363 ~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
..|+|.++.+|. -+.+..||.+.++.+....++-.+.|.++..+|.. .+|+++|-|..|||+|+.+-
T Consensus 255 l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~--------~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 255 LTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTH--------PVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred ecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCC--------ceEEeeccceeEEEeecccc
Confidence 999999999987 79999999999999988557899999999999998 89999999999999999873
No 220
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.63 E-value=1.3e-13 Score=124.27 Aligned_cols=203 Identities=13% Similarity=0.071 Sum_probs=138.9
Q ss_pred EEEEeeCCceEEEEeCCCCce--eee----eeCCCCcccEEEecCCC--CeEEEEecCCCEEEEEeEecCCCceeeeeee
Q 013578 221 IIASCSEGTDISIWHGKTGKL--LGN----VDTNQLKNNMAAISPNG--RFLAAAAFTADVKVWEIVYSKDGLVKAVTSV 292 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~--~~~----~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 292 (440)
+++.|..+|.|.+||++.+.. ... ...|..++..+.|-.+. .-|++++.||.|..|+++.-...........
T Consensus 257 ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~ 336 (555)
T KOG1587|consen 257 LLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLES 336 (555)
T ss_pred eEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccc
Confidence 788889999999999987654 222 23577788888886643 4599999999999998865432110000000
Q ss_pred ee----eeccccceEEEEEcCC-CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC
Q 013578 293 MQ----LKGHKSAVTWLCFAPN-SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG 367 (440)
Q Consensus 293 ~~----~~~h~~~v~~~~~~p~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 367 (440)
.. -......+++++|.|. -..|+.|+.+|.|.--+-........ ..-........|...|..+.++|-+
T Consensus 337 ~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~------~~~~~~~~~~~h~g~v~~v~~nPF~ 410 (555)
T KOG1587|consen 337 KKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE------VSYKGHSTFITHIGPVYAVSRNPFY 410 (555)
T ss_pred ccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc------ccccccccccccCcceEeeecCCCc
Confidence 00 0012346889999884 45789999999887633322111000 0011122344566779999999987
Q ss_pred C-EEEEecCCEEEEEEcC-CccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 368 K-ILAATHGSTLQWLSVE-TGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 368 ~-~l~~~~~~~i~i~d~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
. ++.++.|-.++||... ...++..+ ..+...|++++|+|..+ ..++++..||.|.+||+...
T Consensus 411 ~k~fls~gDW~vriWs~~~~~~Pl~~~-~~~~~~v~~vaWSptrp-------avF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 411 PKNFLSVGDWTVRIWSEDVIASPLLSL-DSSPDYVTDVAWSPTRP-------AVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred cceeeeeccceeEeccccCCCCcchhh-hhccceeeeeEEcCcCc-------eEEEEEcCCCceehhhhhcc
Confidence 6 4445669999999988 66777777 46778899999999864 78999999999999999653
No 221
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.63 E-value=4.4e-14 Score=112.36 Aligned_cols=149 Identities=19% Similarity=0.366 Sum_probs=105.9
Q ss_pred cEEEecCCCCeEEEEec----------CCCEEEEEeEecCCCceeeeeeeeeeec-cccceEEEEEcCCCCEEEEE--eC
Q 013578 253 NMAAISPNGRFLAAAAF----------TADVKVWEIVYSKDGLVKAVTSVMQLKG-HKSAVTWLCFAPNSEQIITA--SK 319 (440)
Q Consensus 253 ~~~~~s~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~--~~ 319 (440)
..+.|+++|++|++-.. -|...+|.++.... ....+.- ..++|.+++|+|+|+.|+.. ..
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-------~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~ 81 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-------PVESIELKKEGPIHDVAWSPNGNEFAVIYGSM 81 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-------ccceeeccCCCceEEEEECcCCCEEEEEEccC
Confidence 35788999988776543 13456666644331 1222222 34579999999999987654 45
Q ss_pred CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec----CCEEEEEEcCCccchhhhhcc
Q 013578 320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH----GSTLQWLSVETGKVLDTAEKA 395 (440)
Q Consensus 320 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----~~~i~i~d~~~~~~~~~~~~~ 395 (440)
+..|.+||++.. .+ .... ...+..+.|+|+|++|+.++ .|.|.+||..+.+.+....
T Consensus 82 ~~~v~lyd~~~~-~i--------------~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-- 142 (194)
T PF08662_consen 82 PAKVTLYDVKGK-KI--------------FSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-- 142 (194)
T ss_pred CcccEEEcCccc-Ee--------------Eeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--
Confidence 779999999622 11 1111 12356799999999999864 4789999999998887763
Q ss_pred ccCCeEEEEecCCCCCCCCCcceEEEEeeC------CCeEEEEeCCC
Q 013578 396 HEGEITCMAWAPKTIPMGNQQVSVLATSSV------DKKVKLWLAPS 436 (440)
Q Consensus 396 h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~------Dg~i~vw~~~~ 436 (440)
|. .++.++|+|+| ++|+++.. |+.++||++..
T Consensus 143 ~~-~~t~~~WsPdG--------r~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 143 HS-DATDVEWSPDG--------RYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred cC-cEEEEEEcCCC--------CEEEEEEeccceeccccEEEEEecC
Confidence 44 47899999999 89998875 78899999864
No 222
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.63 E-value=5.2e-15 Score=118.91 Aligned_cols=172 Identities=19% Similarity=0.252 Sum_probs=116.3
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeE-EEEecCCCEEEEEeEecCCCceeeeeeeeeeeccc
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFL-AAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK 299 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~ 299 (440)
++.....++.|.+|++...+-...++.....+..+.|||||+.+ .+...+-+|.+|.+.+.+ ...++-.+
T Consensus 63 ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~---------~~~~~~pK 133 (447)
T KOG4497|consen 63 ILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK---------GYLLPHPK 133 (447)
T ss_pred eeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce---------eEEecccc
Confidence 55566778889999999988888888888999999999999654 555668999999997654 22233234
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec---CC
Q 013578 300 SAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH---GS 376 (440)
Q Consensus 300 ~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---~~ 376 (440)
..+..++|+|||++.+.+++-.....+++...+ .-.. .....-.....+.+.|+|||..||+=+ +-
T Consensus 134 ~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~----~W~l-------l~~f~~dT~DltgieWsPdg~~laVwd~~Ley 202 (447)
T KOG4497|consen 134 TNVKGYAFHPDGQFCAILSRRDCKDYVQISSCK----AWIL-------LKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEY 202 (447)
T ss_pred cCceeEEECCCCceeeeeecccHHHHHHHHhhH----HHHH-------HHhcCCCcccccCceECCCCcEEEEecchhhh
Confidence 456899999999998877753211111111000 0000 011111122355799999999988632 33
Q ss_pred EEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578 377 TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL 433 (440)
Q Consensus 377 ~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~ 433 (440)
.|+.|. -.-.+..++|+|.+ ++|+.|+.|+.+||-+
T Consensus 203 kv~aYe-------------~~lG~k~v~wsP~~--------qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 203 KVYAYE-------------RGLGLKFVEWSPCN--------QFLAVGSYDQMLRVLN 238 (447)
T ss_pred eeeeee-------------eccceeEEEecccc--------ceEEeeccchhhhhhc
Confidence 444332 22468899999987 8999999999998854
No 223
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.62 E-value=3.5e-14 Score=110.68 Aligned_cols=145 Identities=12% Similarity=0.158 Sum_probs=110.3
Q ss_pred EEEEeeCCceEEEEeCCCCcee----------eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeee
Q 013578 221 IIASCSEGTDISIWHGKTGKLL----------GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVT 290 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~----------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 290 (440)
++++|-++|.+.+||+.++..+ ..+..|..++.++.+.+.-..=++|+.+..+..|.+..... ...
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g----slq 242 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG----SLQ 242 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC----ccc
Confidence 6778889999999999987433 33345788899999988766678888889999999865431 111
Q ss_pred eeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEE
Q 013578 291 SVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKIL 370 (440)
Q Consensus 291 ~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 370 (440)
......-..-.|..+..-||++.+||++.|+.||+|..++...+ ....-|...|.+++|+|+..++
T Consensus 243 ~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pL--------------AVLkyHsagvn~vAfspd~~lm 308 (323)
T KOG0322|consen 243 IRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPL--------------AVLKYHSAGVNAVAFSPDCELM 308 (323)
T ss_pred ccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCch--------------hhhhhhhcceeEEEeCCCCchh
Confidence 11222223456888999999999999999999999999876432 2223455779999999999988
Q ss_pred EEec-CCEEEEEEc
Q 013578 371 AATH-GSTLQWLSV 383 (440)
Q Consensus 371 ~~~~-~~~i~i~d~ 383 (440)
|.++ |+.|.+|++
T Consensus 309 AaaskD~rISLWkL 322 (323)
T KOG0322|consen 309 AAASKDARISLWKL 322 (323)
T ss_pred hhccCCceEEeeec
Confidence 8876 999999985
No 224
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.62 E-value=4.8e-13 Score=109.47 Aligned_cols=176 Identities=14% Similarity=0.164 Sum_probs=131.1
Q ss_pred CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee---ccccceEE
Q 013578 228 GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK---GHKSAVTW 304 (440)
Q Consensus 228 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~h~~~v~~ 304 (440)
.+.+++++.+.+..+..+.. ..+|.++.++. +.|++.-.+ .|+|||++..+ .++++. .+...+..
T Consensus 67 pr~Lkv~~~Kk~~~ICe~~f-pt~IL~VrmNr--~RLvV~Lee-~IyIydI~~Mk--------lLhTI~t~~~n~~gl~A 134 (391)
T KOG2110|consen 67 PRKLKVVHFKKKTTICEIFF-PTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMK--------LLHTIETTPPNPKGLCA 134 (391)
T ss_pred CceEEEEEcccCceEEEEec-CCceEEEEEcc--ceEEEEEcc-cEEEEecccce--------eehhhhccCCCccceEe
Confidence 34588999888877776654 34677777765 456666544 49999997665 444443 34445666
Q ss_pred EEEcCCCCEEEEEe--CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecC--CEEEE
Q 013578 305 LCFAPNSEQIITAS--KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHG--STLQW 380 (440)
Q Consensus 305 ~~~~p~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~i~i 380 (440)
+++++.+.+|+--+ ..|.|.+||+.+... ......|...+.+++|+++|.+||++++ -.|||
T Consensus 135 lS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~--------------v~~I~aH~~~lAalafs~~G~llATASeKGTVIRV 200 (391)
T KOG2110|consen 135 LSPNNANCYLAYPGSTTSGDVVLFDTINLQP--------------VNTINAHKGPLAALAFSPDGTLLATASEKGTVIRV 200 (391)
T ss_pred eccCCCCceEEecCCCCCceEEEEEccccee--------------eeEEEecCCceeEEEECCCCCEEEEeccCceEEEE
Confidence 66666667887433 468999999985432 2223467788999999999999999984 46799
Q ss_pred EEcCCccchhhhhcccc-CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 381 LSVETGKVLDTAEKAHE-GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 381 ~d~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
|.+.+|+.+.++.+|-. ..|.+++|+|++ .+|++.|+.++|+||+++..
T Consensus 201 f~v~~G~kl~eFRRG~~~~~IySL~Fs~ds--------~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 201 FSVPEGQKLYEFRRGTYPVSIYSLSFSPDS--------QFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred EEcCCccEeeeeeCCceeeEEEEEEECCCC--------CeEEEecCCCeEEEEEeccc
Confidence 99999999998864433 368999999998 89999999999999999754
No 225
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=6.1e-13 Score=120.33 Aligned_cols=172 Identities=22% Similarity=0.201 Sum_probs=108.8
Q ss_pred ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEE-ecCC--CEEEEEeEecCCCceeeeeeeeeeeccccceEEE
Q 013578 229 TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAA-AFTA--DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWL 305 (440)
Q Consensus 229 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 305 (440)
..|++|++.+++..... ........+.|+|||+.|+.. +.+| .|++||+..+. ...+..+...+...
T Consensus 223 ~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~---------~~~lt~~~~~~~~~ 292 (429)
T PRK03629 223 SALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---------IRQVTDGRSNNTEP 292 (429)
T ss_pred cEEEEEECCCCCeEEcc-CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC---------EEEccCCCCCcCce
Confidence 45888888877543222 222334568999999988865 4455 47888875443 23333344567889
Q ss_pred EEcCCCCEEEEEeC-CCcEEEE--ecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec----CCEE
Q 013578 306 CFAPNSEQIITASK-DGTLRVW--NINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH----GSTL 378 (440)
Q Consensus 306 ~~~p~~~~l~s~~~-dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----~~~i 378 (440)
.|+|||+.|+..+. ++...|| |+.++.. ..+. . . ........|+|||++++... ...|
T Consensus 293 ~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~--------~~lt----~-~--~~~~~~~~~SpDG~~Ia~~~~~~g~~~I 357 (429)
T PRK03629 293 TWFPDSQNLAYTSDQAGRPQVYKVNINGGAP--------QRIT----W-E--GSQNQDADVSSDGKFMVMVSSNGGQQHI 357 (429)
T ss_pred EECCCCCEEEEEeCCCCCceEEEEECCCCCe--------EEee----c-C--CCCccCEEECCCCCEEEEEEccCCCceE
Confidence 99999998877665 3455555 5543311 1110 0 1 11234688999999888643 2468
Q ss_pred EEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCe---EEEEeCCC
Q 013578 379 QWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKK---VKLWLAPS 436 (440)
Q Consensus 379 ~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~---i~vw~~~~ 436 (440)
++||+.+++... +... .......|+||+ ++|+.++.|+. +.+++++.
T Consensus 358 ~~~dl~~g~~~~-Lt~~--~~~~~p~~SpDG--------~~i~~~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 358 AKQDLATGGVQV-LTDT--FLDETPSIAPNG--------TMVIYSSSQGMGSVLNLVSTDG 407 (429)
T ss_pred EEEECCCCCeEE-eCCC--CCCCCceECCCC--------CEEEEEEcCCCceEEEEEECCC
Confidence 899998886432 2112 234567899998 88888887764 67777754
No 226
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=3.9e-14 Score=121.61 Aligned_cols=207 Identities=21% Similarity=0.266 Sum_probs=143.6
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeee-CCCCcccEEEecC--CCCeEEEEecCCCEEEEEeEecCCCcee--eeeeeeee
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVD-TNQLKNNMAAISP--NGRFLAAAAFTADVKVWEIVYSKDGLVK--AVTSVMQL 295 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~~ 295 (440)
+|++|++|-.+.|||.-..+.+..+. +|...|.++.|-| +.+.+++|..|..|++||+...+.+... .......+
T Consensus 64 lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~ 143 (758)
T KOG1310|consen 64 LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCW 143 (758)
T ss_pred EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhh
Confidence 78888999999999998888877774 6888899999988 5678999999999999999764432221 12245556
Q ss_pred eccccceEEEEEcCCC-CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEe
Q 013578 296 KGHKSAVTWLCFAPNS-EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAAT 373 (440)
Q Consensus 296 ~~h~~~v~~~~~~p~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~ 373 (440)
..|...|..|+-.|++ ..+.++++||+|+-+|++.............. ............++..+|... +||+|
T Consensus 144 ~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~----l~ny~~~lielk~ltisp~rp~~laVG 219 (758)
T KOG1310|consen 144 SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSI----LVNYNPQLIELKCLTISPSRPYYLAVG 219 (758)
T ss_pred hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHH----HHHhchhhheeeeeeecCCCCceEEec
Confidence 7799999999999998 67889999999999999965433222211111 111122234567899999876 66665
Q ss_pred c-CCEEEEEEcC--------Ccc----------chhhhhcccc-----------CCeEEEEecCCCCCCCCCcceEEEEe
Q 013578 374 H-GSTLQWLSVE--------TGK----------VLDTAEKAHE-----------GEITCMAWAPKTIPMGNQQVSVLATS 423 (440)
Q Consensus 374 ~-~~~i~i~d~~--------~~~----------~~~~~~~~h~-----------~~v~~v~~~~~~~~~~~~~~~~l~t~ 423 (440)
. +--.++||.+ .+. ++..+..+|. ..++-+.|+|+|. .+|++-
T Consensus 220 gsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGt-------ElLvs~ 292 (758)
T KOG1310|consen 220 GSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGT-------ELLVSW 292 (758)
T ss_pred CCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCc-------EEEEee
Confidence 4 7788999932 111 2222323333 1256788999972 466665
Q ss_pred eCCCeEEEEeCCCCCC
Q 013578 424 SVDKKVKLWLAPSLES 439 (440)
Q Consensus 424 ~~Dg~i~vw~~~~~~~ 439 (440)
+.+ .|+++++..+++
T Consensus 293 ~gE-hVYlfdvn~~~~ 307 (758)
T KOG1310|consen 293 GGE-HVYLFDVNEDKS 307 (758)
T ss_pred CCe-EEEEEeecCCCC
Confidence 544 599999987764
No 227
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=9.4e-13 Score=119.93 Aligned_cols=174 Identities=16% Similarity=0.149 Sum_probs=110.7
Q ss_pred CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEE-EEecCCC--EEEEEeEecCCCceeeeeeeeeeeccccceEE
Q 013578 228 GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLA-AAAFTAD--VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTW 304 (440)
Q Consensus 228 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~ 304 (440)
+..|++||+.+++.. .+......+....|+|||+.|+ +.+.++. |++||+..+. ...+..+......
T Consensus 225 ~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---------~~~Lt~~~~~~~~ 294 (435)
T PRK05137 225 RPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT---------TTRLTDSPAIDTS 294 (435)
T ss_pred CCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc---------eEEccCCCCccCc
Confidence 356899999887653 3444455667889999999876 4455665 5566664432 3344445566778
Q ss_pred EEEcCCCCEEEEEeC-CC--cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--C--CE
Q 013578 305 LCFAPNSEQIITASK-DG--TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--G--ST 377 (440)
Q Consensus 305 ~~~~p~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~--~~ 377 (440)
..|+|||+.|+..+. +| .|.+||+.++.. +.+ ... ...+....|+|||++|+... . ..
T Consensus 295 ~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~--------~~l----t~~---~~~~~~~~~SpdG~~ia~~~~~~~~~~ 359 (435)
T PRK05137 295 PSYSPDGSQIVFESDRSGSPQLYVMNADGSNP--------RRI----SFG---GGRYSTPVWSPRGDLIAFTKQGGGQFS 359 (435)
T ss_pred eeEcCCCCEEEEEECCCCCCeEEEEECCCCCe--------EEe----ecC---CCcccCeEECCCCCEEEEEEcCCCceE
Confidence 999999998887663 33 577777764321 111 000 12244688999999988743 2 46
Q ss_pred EEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCC------CeEEEEeCCCC
Q 013578 378 LQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD------KKVKLWLAPSL 437 (440)
Q Consensus 378 i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D------g~i~vw~~~~~ 437 (440)
|.+||..++.. ..+. +...+..+.|+||+ ++|+..+.+ ..+.++++..+
T Consensus 360 i~~~d~~~~~~-~~lt--~~~~~~~p~~spDG--------~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 360 IGVMKPDGSGE-RILT--SGFLVEGPTWAPNG--------RVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred EEEEECCCCce-Eecc--CCCCCCCCeECCCC--------CEEEEEEccCCCCCcceEEEEECCCC
Confidence 88899865543 2332 22357788999998 666654442 25777777654
No 228
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.59 E-value=4.2e-15 Score=124.79 Aligned_cols=195 Identities=20% Similarity=0.222 Sum_probs=156.6
Q ss_pred ecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCce
Q 013578 207 FGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLV 286 (440)
Q Consensus 207 ~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 286 (440)
+++..+-++.+|+ +++.|+..|.|..+|..++.....+... ..|..+.|-.+.++||++ ....++|||-. +.
T Consensus 130 FGPY~~~ytrnGr-hlllgGrKGHlAa~Dw~t~~L~~Ei~v~-Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~-Gt---- 201 (545)
T KOG1272|consen 130 FGPYHLDYTRNGR-HLLLGGRKGHLAAFDWVTKKLHFEINVM-ETVRDVTFLHNEQFFAVA-QKKYVYVYDNN-GT---- 201 (545)
T ss_pred cCCeeeeecCCcc-EEEecCCccceeeeecccceeeeeeehh-hhhhhhhhhcchHHHHhh-hhceEEEecCC-Cc----
Confidence 3444445577888 8888889999999999999998888764 468888998888888887 57789999942 21
Q ss_pred eeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC
Q 013578 287 KAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD 366 (440)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 366 (440)
.++.++.| ..|..+.|-|..-+|++++..|.++--|+.++..+.... . ....+..+.-+|-
T Consensus 202 ----ElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~-----------t---~~G~~~vm~qNP~ 262 (545)
T KOG1272|consen 202 ----ELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR-----------T---GAGRTDVMKQNPY 262 (545)
T ss_pred ----EEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHH-----------c---cCCccchhhcCCc
Confidence 45555544 578999999998899999999999999999886543211 1 1122445777788
Q ss_pred CCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 367 GKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 367 g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
+-.+-.|. +|+|.+|...+.+++..+. .|.++|.+|++.++| +|++|.|.|..++|||++..
T Consensus 263 NaVih~GhsnGtVSlWSP~skePLvKiL-cH~g~V~siAv~~~G--------~YMaTtG~Dr~~kIWDlR~~ 325 (545)
T KOG1272|consen 263 NAVIHLGHSNGTVSLWSPNSKEPLVKIL-CHRGPVSSIAVDRGG--------RYMATTGLDRKVKIWDLRNF 325 (545)
T ss_pred cceEEEcCCCceEEecCCCCcchHHHHH-hcCCCcceEEECCCC--------cEEeecccccceeEeeeccc
Confidence 88887775 8999999999999998884 899999999999999 99999999999999999864
No 229
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=9.6e-13 Score=119.67 Aligned_cols=173 Identities=22% Similarity=0.209 Sum_probs=109.2
Q ss_pred ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEE-EecCC--CEEEEEeEecCCCceeeeeeeeeeeccccceEEE
Q 013578 229 TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAA-AAFTA--DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWL 305 (440)
Q Consensus 229 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 305 (440)
..|++||+.+++... +........++.|+|||+.|+. .+.+| .|++||+..+. ...+..+.......
T Consensus 228 ~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~---------~~~lt~~~~~~~~~ 297 (433)
T PRK04922 228 SAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ---------LTRLTNHFGIDTEP 297 (433)
T ss_pred cEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC---------eEECccCCCCccce
Confidence 458889988776533 2222334557899999997764 45555 48888875543 23344455556778
Q ss_pred EEcCCCCEEEEEe-CCCc--EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--C--CEE
Q 013578 306 CFAPNSEQIITAS-KDGT--LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--G--STL 378 (440)
Q Consensus 306 ~~~p~~~~l~s~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~--~~i 378 (440)
+|+|||++|+..+ .+|. |.++|+.++... .+. ..+ ......+|+|||++++... + ..|
T Consensus 298 ~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~--------~lt-----~~g--~~~~~~~~SpDG~~Ia~~~~~~~~~~I 362 (433)
T PRK04922 298 TWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE--------RLT-----FQG--NYNARASVSPDGKKIAMVHGSGGQYRI 362 (433)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCeE--------Eee-----cCC--CCccCEEECCCCCEEEEEECCCCceeE
Confidence 9999999888766 4455 555565543211 010 011 1123589999999988643 2 369
Q ss_pred EEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCC---CeEEEEeCCCC
Q 013578 379 QWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD---KKVKLWLAPSL 437 (440)
Q Consensus 379 ~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D---g~i~vw~~~~~ 437 (440)
.+||+.+++.. .+. +........|+||+ ++|+..+.+ +.|.++++...
T Consensus 363 ~v~d~~~g~~~-~Lt--~~~~~~~p~~spdG--------~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 363 AVMDLSTGSVR-TLT--PGSLDESPSFAPNG--------SMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred EEEECCCCCeE-ECC--CCCCCCCceECCCC--------CEEEEEEecCCceEEEEEECCCC
Confidence 99999888755 332 33345677999998 676665553 45777777543
No 230
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.57 E-value=7.4e-12 Score=109.84 Aligned_cols=298 Identities=17% Similarity=0.205 Sum_probs=158.7
Q ss_pred cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC 163 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~ 163 (440)
+..+......-..+.|+|||+++++++.||.|.++|+.+.+.. .. ...+.....+++++||++++++.... .
T Consensus 29 ~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v--~~----i~~G~~~~~i~~s~DG~~~~v~n~~~--~ 100 (369)
T PF02239_consen 29 VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVV--AT----IKVGGNPRGIAVSPDGKYVYVANYEP--G 100 (369)
T ss_dssp EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEE--EE----EE-SSEEEEEEE--TTTEEEEEEEET--T
T ss_pred EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEE--EE----EecCCCcceEEEcCCCCEEEEEecCC--C
Confidence 4455544334445789999999999999999999999987521 11 12345678999999999999987663 3
Q ss_pred eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee-
Q 013578 164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL- 242 (440)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~- 242 (440)
.+.+++.............. ..... ... -...+..++....++++--+.+.|.+.|....+.+
T Consensus 101 ~v~v~D~~tle~v~~I~~~~------~~~~~---~~~-------Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 101 TVSVIDAETLEPVKTIPTGG------MPVDG---PES-------RVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp EEEEEETTT--EEEEEE--E------E-TTT---S----------EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred ceeEeccccccceeeccccc------ccccc---cCC-------CceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 55555544331111000000 00000 000 01122335666645556566688988887765443
Q ss_pred -eeeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeee----eeccccceEEEEEcCCCCEEE-
Q 013578 243 -GNVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQ----LKGHKSAVTWLCFAPNSEQII- 315 (440)
Q Consensus 243 -~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~----~~~h~~~v~~~~~~p~~~~l~- 315 (440)
..+.. ........|+|++++++++. .+..|-++|....+ .+.. -..|..++..+ .+|....+.
T Consensus 165 ~~~i~~-g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k--------~v~~i~~g~~p~~~~~~~~-php~~g~vw~ 234 (369)
T PF02239_consen 165 VTTIKV-GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK--------LVALIDTGKKPHPGPGANF-PHPGFGPVWA 234 (369)
T ss_dssp EEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE--------EEEEEE-SSSBEETTEEEE-EETTTEEEEE
T ss_pred eeeecc-cccccccccCcccceeeecccccceeEEEeeccce--------EEEEeeccccccccccccc-cCCCcceEEe
Confidence 33333 33456789999999887754 46678888865432 1111 12344444444 234332221
Q ss_pred EE---------eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe----c-CCEEEEE
Q 013578 316 TA---------SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT----H-GSTLQWL 381 (440)
Q Consensus 316 s~---------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~----~-~~~i~i~ 381 (440)
+. -....+.+||....+.+ +.++. .+.. .-+..+|+++++.+. . .+.|.++
T Consensus 235 ~~~~~~~~~~~ig~~~v~v~d~~~wkvv-------~~I~~-----~G~g---lFi~thP~s~~vwvd~~~~~~~~~v~vi 299 (369)
T PF02239_consen 235 TSGLGYFAIPLIGTDPVSVHDDYAWKVV-------KTIPT-----QGGG---LFIKTHPDSRYVWVDTFLNPDADTVQVI 299 (369)
T ss_dssp EEBSSSSEEEEEE--TTT-STTTBTSEE-------EEEE------SSSS-----EE--TT-SEEEEE-TT-SSHT-EEEE
T ss_pred eccccceecccccCCccccchhhcCeEE-------EEEEC-----CCCc---ceeecCCCCccEEeeccCCCCCceEEEE
Confidence 11 11223444554433222 11111 1111 247789999999986 2 3899999
Q ss_pred EcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEE-EEeeC-CCeEEEEeCCCCC
Q 013578 382 SVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVL-ATSSV-DKKVKLWLAPSLE 438 (440)
Q Consensus 382 d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l-~t~~~-Dg~i~vw~~~~~~ 438 (440)
|.++.+....+..+-...+..+.|+++| +.+ +|.-. ++.|.|||..+.+
T Consensus 300 D~~tl~~~~~i~~~~~~~~~h~ef~~dG--------~~v~vS~~~~~~~i~v~D~~Tl~ 350 (369)
T PF02239_consen 300 DKKTLKVVKTITPGPGKRVVHMEFNPDG--------KEVWVSVWDGNGAIVVYDAKTLK 350 (369)
T ss_dssp ECCGTEEEE-HHHHHT--EEEEEE-TTS--------SEEEEEEE--TTEEEEEETTTTE
T ss_pred ECcCcceeEEEeccCCCcEeccEECCCC--------CEEEEEEecCCCEEEEEECCCcE
Confidence 9999988877754444469999999998 433 33333 3489999998865
No 231
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.57 E-value=2.8e-12 Score=103.05 Aligned_cols=178 Identities=14% Similarity=0.274 Sum_probs=126.1
Q ss_pred ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccc--cceEEEE
Q 013578 229 TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK--SAVTWLC 306 (440)
Q Consensus 229 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~ 306 (440)
..|.|||-....++.++.. ..+|..+.+.++ .|++. ..++|+||...... +.++.+.... ...-++.
T Consensus 75 NkviIWDD~k~~~i~el~f-~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~-------k~l~~~et~~NPkGlC~~~ 143 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSF-NSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNP-------KLLHVIETRSNPKGLCSLC 143 (346)
T ss_pred ceEEEEecccCcEEEEEEe-ccceeeEEEcCC--eEEEE-ecCeEEEEEcCCCh-------hheeeeecccCCCceEeec
Confidence 4599999777788888765 567999998876 45444 46789999875322 1233332211 1122222
Q ss_pred EcCCCCEEEEEe-CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEc
Q 013578 307 FAPNSEQIITAS-KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSV 383 (440)
Q Consensus 307 ~~p~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~ 383 (440)
-+.+..+||.-+ .-|.|+|-|+..... . +......|...|.+++++-+|..+|+++ +-.|+|||.
T Consensus 144 ~~~~k~~LafPg~k~GqvQi~dL~~~~~-----~-------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt 211 (346)
T KOG2111|consen 144 PTSNKSLLAFPGFKTGQVQIVDLASTKP-----N-------APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDT 211 (346)
T ss_pred CCCCceEEEcCCCccceEEEEEhhhcCc-----C-------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEc
Confidence 222334455433 568999999974321 0 1223357788899999999999999987 346899999
Q ss_pred CCccchhhhhcccc-CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 384 ETGKVLDTAEKAHE-GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 384 ~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
.+|+.+.++..|-. ..|.+++|+|+. .+|+.+|+-|++.||.+...
T Consensus 212 ~~g~~l~E~RRG~d~A~iy~iaFSp~~--------s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 212 EDGTLLQELRRGVDRADIYCIAFSPNS--------SWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CCCcEeeeeecCCchheEEEEEeCCCc--------cEEEEEcCCCeEEEEEeecC
Confidence 99999998865433 479999999998 89999999999999998754
No 232
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.55 E-value=1.8e-14 Score=129.54 Aligned_cols=262 Identities=19% Similarity=0.207 Sum_probs=190.3
Q ss_pred CCCCCCCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCC
Q 013578 62 HSKPHSHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPP 137 (440)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~ 137 (440)
+.+-....++..|.-+++|.. ++....||.+.|+.++.+.+..+++++|.|..|++|.+..+.. +....+|
T Consensus 199 Drtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~p-----vsvLrgh 273 (1113)
T KOG0644|consen 199 DRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAP-----VSVLRGH 273 (1113)
T ss_pred ccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCch-----HHHHhcc
Confidence 344455667788888888864 5778999999999999999999999999999999999988763 4566789
Q ss_pred CCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCC
Q 013578 138 GGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTAD 217 (440)
Q Consensus 138 ~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (440)
.+.|++++|+|-
T Consensus 274 tgavtaiafsP~-------------------------------------------------------------------- 285 (1113)
T KOG0644|consen 274 TGAVTAIAFSPR-------------------------------------------------------------------- 285 (1113)
T ss_pred ccceeeeccCcc--------------------------------------------------------------------
Confidence 999999999984
Q ss_pred CCeEEEEeeCCceEEEEeCCCCceeeee----e-CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeee
Q 013578 218 GSTIIASCSEGTDISIWHGKTGKLLGNV----D-TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSV 292 (440)
Q Consensus 218 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~----~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 292 (440)
.+.+.||++++||.+ ....... . .....+.++.|...+..+++|+.|+.-..|.+...
T Consensus 286 -----~sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l----------- 348 (1113)
T KOG0644|consen 286 -----ASSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL----------- 348 (1113)
T ss_pred -----ccCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHh-----------
Confidence 245678889999977 2222111 0 12344566777888889999999999888875321
Q ss_pred eeeeccccceEEEEEcCCC-CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE
Q 013578 293 MQLKGHKSAVTWLCFAPNS-EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA 371 (440)
Q Consensus 293 ~~~~~h~~~v~~~~~~p~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 371 (440)
..+...+.-+.++.+- .+.+++-.+-.+.+|++.++... +...+|...+..+.++|-+..++
T Consensus 349 ---~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~--------------H~l~ghsd~~yvLd~Hpfn~ri~ 411 (1113)
T KOG0644|consen 349 ---AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLL--------------HNLMGHSDEVYVLDVHPFNPRIA 411 (1113)
T ss_pred ---hhhccceEEEeccccccccceeeeeeeEeeeeecccchhh--------------hhhcccccceeeeeecCCCcHhh
Confidence 1122222222222222 35566667788999999876432 33446666778899999888666
Q ss_pred E--ecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 372 A--THGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 372 ~--~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
- |.||...|||+-.|..+.....+| +.+..-.|+++| ..++....-|.+.|.....+++
T Consensus 412 msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdg--------ts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 412 MSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDG--------TSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred hhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCC--------ceEecCCCCCceEEeccCCCcc
Confidence 3 669999999999998887776564 457778899998 6777777778888877665543
No 233
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.54 E-value=3.1e-11 Score=106.26 Aligned_cols=293 Identities=15% Similarity=0.213 Sum_probs=165.5
Q ss_pred EEEeeCC----CcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecC-CcceEEeecccccccccccc
Q 013578 106 LATACAD----GVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL-SGCSLYMYGEEKAISTNEGK 180 (440)
Q Consensus 106 l~t~s~d----g~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 180 (440)
++.|+.. +.|.+|+++....... .... ........-++++|++++|.++.... ....+..+........
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~-~~~~-~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~---- 75 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLT-LVQT-VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGT---- 75 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEE-EEEE-EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTE----
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCce-Eeee-ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcce----
Confidence 4555555 6899999855443322 2222 22335677899999999999987753 2333333332211000
Q ss_pred ccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC-Cceeee---ee----------
Q 013578 181 QQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT-GKLLGN---VD---------- 246 (440)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~---~~---------- 246 (440)
-............++.+...++++.++++.-.++.|.++++.. +..... +.
T Consensus 76 ---------------L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~r 140 (345)
T PF10282_consen 76 ---------------LTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDR 140 (345)
T ss_dssp ---------------EEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTT
T ss_pred ---------------eEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccc
Confidence 0000000001122333455789996666666799999999986 333222 11
Q ss_pred CCCCcccEEEecCCCCeEEEEec-CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe-CCCcEE
Q 013578 247 TNQLKNNMAAISPNGRFLAAAAF-TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS-KDGTLR 324 (440)
Q Consensus 247 ~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~-~dg~i~ 324 (440)
.......++.++|+++++++... ...|.+|++...... .... ....+ ........++|+|++++++... .+++|.
T Consensus 141 q~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~-l~~~-~~~~~-~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~ 217 (345)
T PF10282_consen 141 QEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK-LTPV-DSIKV-PPGSGPRHLAFSPDGKYAYVVNELSNTVS 217 (345)
T ss_dssp TSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T-EEEE-EEEEC-STTSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred cccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce-EEEe-ecccc-ccCCCCcEEEEcCCcCEEEEecCCCCcEE
Confidence 11234568999999999888754 346889988654311 1111 11122 2345578999999999886665 577899
Q ss_pred EEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcC--Cccc--hhhhhccccC
Q 013578 325 VWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSVE--TGKV--LDTAEKAHEG 398 (440)
Q Consensus 325 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~--~~~~--~~~~~~~h~~ 398 (440)
++++....... ..............+ ......++++|||++|.++. .+.|.+|++. ++++ +..+ .....
T Consensus 218 v~~~~~~~g~~---~~~~~~~~~~~~~~~-~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~-~~~G~ 292 (345)
T PF10282_consen 218 VFDYDPSDGSL---TEIQTISTLPEGFTG-ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTV-PTGGK 292 (345)
T ss_dssp EEEEETTTTEE---EEEEEEESCETTSCS-SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEE-EESSS
T ss_pred EEeecccCCce---eEEEEeeeccccccc-cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEE-eCCCC
Confidence 99988211100 011111100001111 12456799999999998865 6899999983 3433 2222 12234
Q ss_pred CeEEEEecCCCCCCCCCcceEEEEee-CCCeEEEEeCC
Q 013578 399 EITCMAWAPKTIPMGNQQVSVLATSS-VDKKVKLWLAP 435 (440)
Q Consensus 399 ~v~~v~~~~~~~~~~~~~~~~l~t~~-~Dg~i~vw~~~ 435 (440)
....++++|++ ++|+++. .++.|.+|+++
T Consensus 293 ~Pr~~~~s~~g--------~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 293 FPRHFAFSPDG--------RYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp SEEEEEE-TTS--------SEEEEEETTTTEEEEEEEE
T ss_pred CccEEEEeCCC--------CEEEEEecCCCeEEEEEEe
Confidence 58999999998 6777665 57899999874
No 234
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=3.3e-12 Score=115.78 Aligned_cols=167 Identities=19% Similarity=0.208 Sum_probs=105.5
Q ss_pred ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEE-EecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEE
Q 013578 229 TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAA-AAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF 307 (440)
Q Consensus 229 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 307 (440)
..|++||+.+++... +..........+|+|||+.|+. .+.+|...||.++.... ....+..+...+....|
T Consensus 220 ~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~-------~~~~lt~~~~~~~~~~w 291 (427)
T PRK02889 220 PVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS-------GLRRLTQSSGIDTEPFF 291 (427)
T ss_pred cEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCC-------CcEECCCCCCCCcCeEE
Confidence 458999998886543 3223345568899999998874 56788888887754321 13334445555677899
Q ss_pred cCCCCEEEEEeC-CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-C---CEEEEEE
Q 013578 308 APNSEQIITASK-DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-G---STLQWLS 382 (440)
Q Consensus 308 ~p~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~---~~i~i~d 382 (440)
+|||++|+..+. +|...+|.+.... ...+.+. ..+ ......+|+|||++|+... + ..|++||
T Consensus 292 SpDG~~l~f~s~~~g~~~Iy~~~~~~------g~~~~lt-----~~g--~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d 358 (427)
T PRK02889 292 SPDGRSIYFTSDRGGAPQIYRMPASG------GAAQRVT-----FTG--SYNTSPRISPDGKLLAYISRVGGAFKLYVQD 358 (427)
T ss_pred cCCCCEEEEEecCCCCcEEEEEECCC------CceEEEe-----cCC--CCcCceEECCCCCEEEEEEccCCcEEEEEEE
Confidence 999998876553 5677777654211 0001110 011 1123578999999988654 2 2699999
Q ss_pred cCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCC
Q 013578 383 VETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDK 427 (440)
Q Consensus 383 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg 427 (440)
+.+++..... .........|+||+ ++|+.++.++
T Consensus 359 ~~~g~~~~lt---~~~~~~~p~~spdg--------~~l~~~~~~~ 392 (427)
T PRK02889 359 LATGQVTALT---DTTRDESPSFAPNG--------RYILYATQQG 392 (427)
T ss_pred CCCCCeEEcc---CCCCccCceECCCC--------CEEEEEEecC
Confidence 9888754332 22334678999998 6666665543
No 235
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.54 E-value=2.7e-12 Score=117.21 Aligned_cols=222 Identities=18% Similarity=0.260 Sum_probs=136.0
Q ss_pred cccccccCcceeEEEEccCCCEEEEeeCC---CcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecC
Q 013578 84 VNTLKGHGDSVTGLCFSSDGKCLATACAD---GVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL 160 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~d---g~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~ 160 (440)
.+.+..+...+...+|+|||++|+.++.+ ..|.+|++.++... ....+.+.+.+++|+|+++.|+.....
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~------~~~~~~~~~~~~~~spDg~~l~~~~~~- 254 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE------KVASFPGMNGAPAFSPDGSKLAVSLSK- 254 (417)
T ss_pred CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE------EeecCCCCccceEECCCCCEEEEEECC-
Confidence 34455677789999999999999987654 47999999876422 111233456678888888766543211
Q ss_pred CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc
Q 013578 161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK 240 (440)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 240 (440)
..+..|++||+.+++
T Consensus 255 -----------------------------------------------------------------~~~~~i~~~d~~~~~ 269 (417)
T TIGR02800 255 -----------------------------------------------------------------DGNPDIYVMDLDGKQ 269 (417)
T ss_pred -----------------------------------------------------------------CCCccEEEEECCCCC
Confidence 112347888887765
Q ss_pred eeeeeeCCCCcccEEEecCCCCeEEEEec-CC--CEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEE
Q 013578 241 LLGNVDTNQLKNNMAAISPNGRFLAAAAF-TA--DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA 317 (440)
Q Consensus 241 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~ 317 (440)
.. .+..+........|+|+|+.|+..+. ++ .|+++|+..++ ...+..+...+....|+|+|++|+.+
T Consensus 270 ~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~---------~~~l~~~~~~~~~~~~spdg~~i~~~ 339 (417)
T TIGR02800 270 LT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE---------VRRLTFRGGYNASPSWSPDGDLIAFV 339 (417)
T ss_pred EE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---------EEEeecCCCCccCeEECCCCCEEEEE
Confidence 43 33333344456789999998877654 34 45556654322 22333345567788999999999888
Q ss_pred eCCC---cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--C--CEEEEEEcCCccchh
Q 013578 318 SKDG---TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--G--STLQWLSVETGKVLD 390 (440)
Q Consensus 318 ~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~--~~i~i~d~~~~~~~~ 390 (440)
+.++ .|.+||+.++.. ..+. ... .....+|+|||++|+... + ..+++.+.. +....
T Consensus 340 ~~~~~~~~i~~~d~~~~~~--------~~l~-----~~~---~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~ 402 (417)
T TIGR02800 340 HREGGGFNIAVMDLDGGGE--------RVLT-----DTG---LDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRA 402 (417)
T ss_pred EccCCceEEEEEeCCCCCe--------EEcc-----CCC---CCCCceECCCCCEEEEEEeCCCcEEEEEEECC-Cceee
Confidence 8765 788888875321 1110 000 123468999999887754 2 345665543 44444
Q ss_pred hhhccccCCeEEEEe
Q 013578 391 TAEKAHEGEITCMAW 405 (440)
Q Consensus 391 ~~~~~h~~~v~~v~~ 405 (440)
.+. .+.+.+..++|
T Consensus 403 ~~~-~~~g~~~~~~w 416 (417)
T TIGR02800 403 RLP-LGNGDVREPAW 416 (417)
T ss_pred ECC-CCCCCcCCCCC
Confidence 442 33455555555
No 236
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.1e-11 Score=107.12 Aligned_cols=281 Identities=18% Similarity=0.240 Sum_probs=164.7
Q ss_pred eeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecC--------CcceE
Q 013578 94 VTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL--------SGCSL 165 (440)
Q Consensus 94 V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~--------~~~~~ 165 (440)
=+-+.|||-|.||+|--.-| |.+|-=..-. .++. ..| ..|.-+.|||+.++|++-+... .+..+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~-----r~~R-F~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l 284 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFD-----RIQR-FYH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQL 284 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHH-----HHHh-ccC-CCceeeecCCccceEEEecCCccccCcccCCCceE
Confidence 35689999999999998777 8899543221 1111 223 5689999999999999987542 34667
Q ss_pred Eeeccccccccccccc--cCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee
Q 013578 166 YMYGEEKAISTNEGKQ--QSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG 243 (440)
Q Consensus 166 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 243 (440)
.+|+...+........ .....-+.+.| +.|++ +++-...+ .|.||+..+..++.
T Consensus 285 ~IWDI~tG~lkrsF~~~~~~~~~WP~frW----------------------S~DdK-y~Arm~~~-sisIyEtpsf~lld 340 (698)
T KOG2314|consen 285 IIWDIATGLLKRSFPVIKSPYLKWPIFRW----------------------SHDDK-YFARMTGN-SISIYETPSFMLLD 340 (698)
T ss_pred EEEEccccchhcceeccCCCccccceEEe----------------------ccCCc-eeEEeccc-eEEEEecCceeeec
Confidence 7777766654433332 22222233334 45555 55544443 37777765543332
Q ss_pred eeeCCCCcccEEEecCCCCeEEEEecC-----------------------------------------------------
Q 013578 244 NVDTNQLKNNMAAISPNGRFLAAAAFT----------------------------------------------------- 270 (440)
Q Consensus 244 ~~~~~~~~v~~~~~s~~~~~l~~~~~d----------------------------------------------------- 270 (440)
.-...-..|....|+|.+++||.=...
T Consensus 341 ~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~ 420 (698)
T KOG2314|consen 341 KKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKV 420 (698)
T ss_pred ccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccc
Confidence 222222334555555555544421100
Q ss_pred ----CCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC---CCcEEEEecCccccccCCCCcccc
Q 013578 271 ----ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK---DGTLRVWNINVRYHLDEDPKTLKV 343 (440)
Q Consensus 271 ----g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~ 343 (440)
.++.|+.++... -++..+ .....|...+|-|.|..+++.+. ..++.+|.+++... .+..+..
T Consensus 421 ~g~f~n~eIfrireKd-------Ipve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~---~~~lVk~ 489 (698)
T KOG2314|consen 421 KGQFSNLEIFRIREKD-------IPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK---KPSLVKE 489 (698)
T ss_pred cceEeeEEEEEeeccC-------CCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC---chhhhhh
Confidence 011222222111 011111 23567889999999998876653 35788998874211 1111111
Q ss_pred ccccccCCCCCeeeeeeEEeCCCCCEEEEec----CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceE
Q 013578 344 LPIPLLDSNGATLQYDRLSLSSDGKILAATH----GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSV 419 (440)
Q Consensus 344 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~ 419 (440)
+ .....+.+.|+|.|++++++. .|.+.++|+.-..+...-...|. ..+.+.|.|.| +|
T Consensus 490 ~---------dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtG--------RY 551 (698)
T KOG2314|consen 490 L---------DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTG--------RY 551 (698)
T ss_pred h---------cccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc-ccccceECCCC--------CE
Confidence 1 123466799999999998753 68999999985333322211233 57889999999 99
Q ss_pred EEEeeC------CCeEEEEeCC
Q 013578 420 LATSSV------DKKVKLWLAP 435 (440)
Q Consensus 420 l~t~~~------Dg~i~vw~~~ 435 (440)
++|+++ |.--++|++.
T Consensus 552 vvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 552 VVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred EEEeeehhhhccccceEEEEee
Confidence 999987 4556777764
No 237
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=9.6e-12 Score=113.60 Aligned_cols=224 Identities=16% Similarity=0.214 Sum_probs=135.3
Q ss_pred ccccccCcceeEEEEccCCCEEEEeeCC---CcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578 85 NTLKGHGDSVTGLCFSSDGKCLATACAD---GVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS 161 (440)
Q Consensus 85 ~~l~~H~~~V~~l~~s~dg~~l~t~s~d---g~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~ 161 (440)
+.+..|...+...+|+|||+.|+..+.+ ..|.+|++.++.... .....+.+....|+|||+.++.....
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~------l~~~~g~~~~~~~SpDG~~la~~~~~-- 263 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ------ITNFEGLNGAPAWSPDGSKLAFVLSK-- 263 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE------ccCCCCCcCCeEECCCCCEEEEEEcc--
Confidence 3455667788999999999999877644 358888887764321 11222345568899888876644311
Q ss_pred cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578 162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL 241 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 241 (440)
+ .+..|++||+.+++.
T Consensus 264 -------------------------------------------------------~---------g~~~Iy~~d~~~~~~ 279 (430)
T PRK00178 264 -------------------------------------------------------D---------GNPEIYVMDLASRQL 279 (430)
T ss_pred -------------------------------------------------------C---------CCceEEEEECCCCCe
Confidence 0 112478888887764
Q ss_pred eeeeeCCCCcccEEEecCCCCeEEEEec-CCC--EEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe
Q 013578 242 LGNVDTNQLKNNMAAISPNGRFLAAAAF-TAD--VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS 318 (440)
Q Consensus 242 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~ 318 (440)
. .+..+........|+|||+.|+..+. +|. |+++++..++ .. .+ ...+ .......|+|+|++|+..+
T Consensus 280 ~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~---~~---~l-t~~~--~~~~~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 280 S-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR---AE---RV-TFVG--NYNARPRLSADGKTLVMVH 349 (430)
T ss_pred E-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC---EE---Ee-ecCC--CCccceEECCCCCEEEEEE
Confidence 3 34444445567899999998877664 444 5555553332 11 11 1111 2234578999999988776
Q ss_pred CC-C--cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--C--CEEEEEEcCCccchhh
Q 013578 319 KD-G--TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--G--STLQWLSVETGKVLDT 391 (440)
Q Consensus 319 ~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~--~~i~i~d~~~~~~~~~ 391 (440)
.+ + .|.+||+.++... .+. . ... .....|+|||+.++... + ..|++++... .....
T Consensus 350 ~~~~~~~l~~~dl~tg~~~--------~lt----~-~~~---~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~ 412 (430)
T PRK00178 350 RQDGNFHVAAQDLQRGSVR--------ILT----D-TSL---DESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLP 412 (430)
T ss_pred ccCCceEEEEEECCCCCEE--------Ecc----C-CCC---CCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEE
Confidence 43 3 4778888764321 110 0 011 11468999999888643 2 4577777754 33333
Q ss_pred hhccccCCeEEEEecCC
Q 013578 392 AEKAHEGEITCMAWAPK 408 (440)
Q Consensus 392 ~~~~h~~~v~~v~~~~~ 408 (440)
+. .+.+.+...+|+|-
T Consensus 413 l~-~~~g~~~~p~ws~~ 428 (430)
T PRK00178 413 LP-TAQGEVREPSWSPY 428 (430)
T ss_pred Cc-CCCCCcCCCccCCC
Confidence 42 45567788888874
No 238
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=5.1e-12 Score=114.85 Aligned_cols=222 Identities=17% Similarity=0.252 Sum_probs=128.5
Q ss_pred ccCcceeEEEEccCCCEEEEeeC-CC--cEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceE
Q 013578 89 GHGDSVTGLCFSSDGKCLATACA-DG--VIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSL 165 (440)
Q Consensus 89 ~H~~~V~~l~~s~dg~~l~t~s~-dg--~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~ 165 (440)
.+...+.+.+|+|||+.|+..+. ++ .|.+||+.+++.. .+. ...+.....+|+|||+.|+.....
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~---~lt---~~~g~~~~~~wSPDG~~La~~~~~------ 282 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE---KVT---SFPGINGAPRFSPDGKKLALVLSK------ 282 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE---Eec---CCCCCcCCeeECCCCCEEEEEEeC------
Confidence 34456778999999998887654 33 4777787765421 111 112334567888888876644221
Q ss_pred EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeee
Q 013578 166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNV 245 (440)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 245 (440)
++ ...|+++|+.+++.. .+
T Consensus 283 ---------------------------------------------------~g---------~~~Iy~~dl~tg~~~-~l 301 (448)
T PRK04792 283 ---------------------------------------------------DG---------QPEIYVVDIATKALT-RI 301 (448)
T ss_pred ---------------------------------------------------CC---------CeEEEEEECCCCCeE-EC
Confidence 00 123777888776543 33
Q ss_pred eCCCCcccEEEecCCCCeEEEEec-CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC-CCc-
Q 013578 246 DTNQLKNNMAAISPNGRFLAAAAF-TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK-DGT- 322 (440)
Q Consensus 246 ~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~-dg~- 322 (440)
..+.......+|+|||+.|+..+. ++...+|.++... +. ...+..........+|+|||++|+..+. ++.
T Consensus 302 t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-g~------~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~ 374 (448)
T PRK04792 302 TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-GK------VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKF 374 (448)
T ss_pred ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CC------EEEEecCCCCCcCeeECCCCCEEEEEEecCCce
Confidence 334445567899999998877654 4555555443221 11 1111111222345789999998876654 443
Q ss_pred -EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--C--CEEEEEEcCCccchhhhhcccc
Q 013578 323 -LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--G--STLQWLSVETGKVLDTAEKAHE 397 (440)
Q Consensus 323 -i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~--~~i~i~d~~~~~~~~~~~~~h~ 397 (440)
|.++|+.++... .+. . ... ....+|+|||+.|+... + ..+++++. +|+....+ ..+.
T Consensus 375 ~I~~~dl~~g~~~--------~lt----~-~~~---d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l-~~~~ 436 (448)
T PRK04792 375 NIARQDLETGAMQ--------VLT----S-TRL---DESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARL-PAGQ 436 (448)
T ss_pred EEEEEECCCCCeE--------Ecc----C-CCC---CCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEEC-cCCC
Confidence 445666544211 110 0 000 11357999999887643 3 34777786 55555555 3456
Q ss_pred CCeEEEEecCC
Q 013578 398 GEITCMAWAPK 408 (440)
Q Consensus 398 ~~v~~v~~~~~ 408 (440)
+.+...+|+|-
T Consensus 437 g~~~~p~Wsp~ 447 (448)
T PRK04792 437 GEVKSPAWSPF 447 (448)
T ss_pred CCcCCCccCCC
Confidence 67888889873
No 239
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.3e-11 Score=111.27 Aligned_cols=230 Identities=17% Similarity=0.168 Sum_probs=134.1
Q ss_pred ccccCcceeEEEEccCCCEE---EEeeCCCc--EEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578 87 LKGHGDSVTGLCFSSDGKCL---ATACADGV--IRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS 161 (440)
Q Consensus 87 l~~H~~~V~~l~~s~dg~~l---~t~s~dg~--v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~ 161 (440)
|..+...+..-+|||||+.+ ++...+|. |.+.++.+++.. ++.. ..+.....+|+|||+.|+.......
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~--~lt~----~~g~~~~p~wSPDG~~Laf~s~~~g 253 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK--KILA----LQGNQLMPTFSPRKKLLAFISDRYG 253 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce--Eeec----CCCCccceEECCCCCEEEEEECCCC
Confidence 44445566778999999752 24444554 555566655432 1111 2244556789999998876653200
Q ss_pred cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC---
Q 013578 162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT--- 238 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~--- 238 (440)
..+-.+..|++..
T Consensus 254 ----------------------------------------------------------------~~di~~~~~~~~~g~~ 269 (428)
T PRK01029 254 ----------------------------------------------------------------NPDLFIQSFSLETGAI 269 (428)
T ss_pred ----------------------------------------------------------------CcceeEEEeecccCCC
Confidence 0011233345443
Q ss_pred CceeeeeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEE
Q 013578 239 GKLLGNVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA 317 (440)
Q Consensus 239 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~ 317 (440)
++...............+|+|||+.|+..+ .+|...+|.+.....+. ....+..+...+....|+|||++|+..
T Consensus 270 g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~-----~~~~lt~~~~~~~~p~wSPDG~~Laf~ 344 (428)
T PRK01029 270 GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ-----SPRLLTKKYRNSSCPAWSPDGKKIAFC 344 (428)
T ss_pred CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc-----ceEEeccCCCCccceeECCCCCEEEEE
Confidence 222222222223345679999999888766 46766677654321110 122333344567788999999988876
Q ss_pred eCC---CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-c---CCEEEEEEcCCccchh
Q 013578 318 SKD---GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-H---GSTLQWLSVETGKVLD 390 (440)
Q Consensus 318 ~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~---~~~i~i~d~~~~~~~~ 390 (440)
+.+ ..|.+||+.++.... + ... ...+....|+|||+.|+.. . ...|+++|+.+++...
T Consensus 345 ~~~~g~~~I~v~dl~~g~~~~--------L----t~~---~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 345 SVIKGVRQICVYDLATGRDYQ--------L----TTS---PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK 409 (428)
T ss_pred EcCCCCcEEEEEECCCCCeEE--------c----cCC---CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 543 368999998654311 0 000 1124568999999988753 2 3678999998877544
Q ss_pred hhhccccCCeEEEEecCC
Q 013578 391 TAEKAHEGEITCMAWAPK 408 (440)
Q Consensus 391 ~~~~~h~~~v~~v~~~~~ 408 (440)
.. ...+.+...+|+|-
T Consensus 410 Lt--~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 410 IV--IGSGEKRFPSWGAF 425 (428)
T ss_pred ee--cCCCcccCceecCC
Confidence 33 24456778888875
No 240
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.49 E-value=4e-12 Score=119.50 Aligned_cols=207 Identities=13% Similarity=0.115 Sum_probs=143.3
Q ss_pred CCCCCeEEEEeeCCceEEEEeCCCC-------ceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCcee
Q 013578 215 TADGSTIIASCSEGTDISIWHGKTG-------KLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVK 287 (440)
Q Consensus 215 ~~~~~~~l~s~~~d~~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 287 (440)
+++...++++|+.||+|++||.+.- +...++......+.++...+.++.+|+++.||.|++.+++...... .
T Consensus 1057 s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~-~ 1135 (1431)
T KOG1240|consen 1057 SSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSK-R 1135 (1431)
T ss_pred cCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccccc-c
Confidence 3444239999999999999998642 2233444456788899999999999999999999999987532111 1
Q ss_pred eeeeeeeeecc-ccceEEE-EEcC-CCC-EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe
Q 013578 288 AVTSVMQLKGH-KSAVTWL-CFAP-NSE-QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL 363 (440)
Q Consensus 288 ~~~~~~~~~~h-~~~v~~~-~~~p-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 363 (440)
..........+ .+.+.++ +|.. .+. .|+.+...+.|..||++........ ........|++++.
T Consensus 1136 ~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l------------k~~~~hG~vTSi~i 1203 (1431)
T KOG1240|consen 1136 VATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL------------KNQLRHGLVTSIVI 1203 (1431)
T ss_pred eeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh------------hcCccccceeEEEe
Confidence 11122222222 2333333 3332 223 6777888899999999965443221 11122345899999
Q ss_pred CCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEee--CCCeEEEEeCCCCCC
Q 013578 364 SSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSS--VDKKVKLWLAPSLES 439 (440)
Q Consensus 364 s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~--~Dg~i~vw~~~~~~~ 439 (440)
+|.+.+++.|. .|.+.+||++-+.++.....++..+++.+..+|-. .++...++++ ..+.|.+|++.++.+
T Consensus 1204 dp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~-----~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1204 DPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTY-----PQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred cCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccC-----CCCceEEEecccCCCceeeeecccCcc
Confidence 99999999986 79999999999998888877778899999988875 3224444444 478899999998854
No 241
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=1.2e-09 Score=90.13 Aligned_cols=297 Identities=17% Similarity=0.220 Sum_probs=175.1
Q ss_pred cccccCcceeEEEEccCCCEEEEeeC---CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 86 TLKGHGDSVTGLCFSSDGKCLATACA---DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 86 ~l~~H~~~V~~l~~s~dg~~l~t~s~---dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
.+-.+.+.++-|+|+|++++|.++-. +|.|..|.++...... ..+......+.+.+.+++++++++++++....
T Consensus 34 ~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L-t~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~-- 110 (346)
T COG2706 34 QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL-TFLNRQTLPGSPPCYVSVDEDGRFVFVANYHS-- 110 (346)
T ss_pred hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE-EEeeccccCCCCCeEEEECCCCCEEEEEEccC--
Confidence 34567889999999999999999854 5789899888643321 23333334445669999999999999998774
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL 242 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 242 (440)
..+.++.....-......+.....+.. .| .-....-+....+.|+++.+++..-.--.|.+|++..|...
T Consensus 111 g~v~v~p~~~dG~l~~~v~~~~h~g~~-------p~---~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~ 180 (346)
T COG2706 111 GSVSVYPLQADGSLQPVVQVVKHTGSG-------PH---ERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLT 180 (346)
T ss_pred ceEEEEEcccCCccccceeeeecCCCC-------CC---ccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccc
Confidence 444444432211111110000000000 00 00001112233447899844444333334999999977653
Q ss_pred eeee---CCCCcccEEEecCCCCeEEEEec-CCCEEEEEeEecCCCceeeeeeeeeeec---cccceEEEEEcCCCCEEE
Q 013578 243 GNVD---TNQLKNNMAAISPNGRFLAAAAF-TADVKVWEIVYSKDGLVKAVTSVMQLKG---HKSAVTWLCFAPNSEQII 315 (440)
Q Consensus 243 ~~~~---~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~p~~~~l~ 315 (440)
..-. ......+.+.|+|++++.++..+ +++|.+|..... .+.....+.+..+.. ...+...|..+|||++|+
T Consensus 181 ~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLY 259 (346)
T COG2706 181 PADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLY 259 (346)
T ss_pred cccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCccccCCCCceeEEEECCCCCEEE
Confidence 2211 23455688999999999888775 899999998764 233333333333322 234567899999999998
Q ss_pred EEeC-CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEc--CCccchh
Q 013578 316 TASK-DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSV--ETGKVLD 390 (440)
Q Consensus 316 s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~--~~~~~~~ 390 (440)
++.+ ...|.+|.+..... ...... .....+ ..-....++++|++|+++. +..|.+|.. ++|++-.
T Consensus 260 asNRg~dsI~~f~V~~~~g------~L~~~~--~~~teg--~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 260 ASNRGHDSIAVFSVDPDGG------KLELVG--ITPTEG--QFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred EecCCCCeEEEEEEcCCCC------EEEEEE--EeccCC--cCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 8763 34788887763211 111111 011111 1134688999999999875 456877755 5666544
Q ss_pred hhhccccCCeEEEEec
Q 013578 391 TAEKAHEGEITCMAWA 406 (440)
Q Consensus 391 ~~~~~h~~~v~~v~~~ 406 (440)
...........||.|.
T Consensus 330 ~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 330 LGRYAVVPEPVCVKFL 345 (346)
T ss_pred cccccCCCCcEEEEEc
Confidence 3323455566777764
No 242
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.48 E-value=1.8e-10 Score=101.40 Aligned_cols=288 Identities=15% Similarity=0.258 Sum_probs=162.3
Q ss_pred CcceeEEEEccCCCEEEEeeC----CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEE
Q 013578 91 GDSVTGLCFSSDGKCLATACA----DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLY 166 (440)
Q Consensus 91 ~~~V~~l~~s~dg~~l~t~s~----dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~ 166 (440)
......|+++|++++|.+... +|.|..|++....... ..+......+.....++++|++++++++..... .+.
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L-~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g--~v~ 112 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTL-TLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGG--SVS 112 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEE-EEEEEEEESSSCEEEEEECTTSSEEEEEETTTT--EEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCccee-EEeeeeccCCCCcEEEEEecCCCEEEEEEccCC--eEE
Confidence 445677899999999998876 5799999988753221 122222224466788999999999999986633 344
Q ss_pred eeccccc--ccccc--ccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc--
Q 013578 167 MYGEEKA--ISTNE--GKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK-- 240 (440)
Q Consensus 167 ~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-- 240 (440)
+++.... ..... ......-+.+ ... ....+..+.++|+++.++++.-....|++|++....
T Consensus 113 v~~l~~~g~l~~~~~~~~~~g~g~~~------~rq-------~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~ 179 (345)
T PF10282_consen 113 VFPLDDDGSLGEVVQTVRHEGSGPNP------DRQ-------EGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK 179 (345)
T ss_dssp EEEECTTSEEEEEEEEEESEEEESST------TTT-------SSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T
T ss_pred EEEccCCcccceeeeecccCCCCCcc------ccc-------ccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce
Confidence 4333221 10000 0000000000 000 001122345589999666665555679999987654
Q ss_pred ee--eeee-CCCCcccEEEecCCCCeEEEEec-CCCEEEEEeEecCCCceeeeeeeeeeec-c--ccceEEEEEcCCCCE
Q 013578 241 LL--GNVD-TNQLKNNMAAISPNGRFLAAAAF-TADVKVWEIVYSKDGLVKAVTSVMQLKG-H--KSAVTWLCFAPNSEQ 313 (440)
Q Consensus 241 ~~--~~~~-~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~-h--~~~v~~~~~~p~~~~ 313 (440)
.. ..+. ......+.++|+|+++++++..+ ++.|.+|++.... +.......+..+.. . ......|+++|||++
T Consensus 180 l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~ 258 (345)
T PF10282_consen 180 LTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSD-GSLTEIQTISTLPEGFTGENAPAEIAISPDGRF 258 (345)
T ss_dssp EEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT-TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSE
T ss_pred EEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccC-CceeEEEEeeeccccccccCCceeEEEecCCCE
Confidence 32 2222 23345688999999999887765 6779999987322 22222222222211 1 125788999999999
Q ss_pred EEEEe-CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEc--CCccc
Q 013578 314 IITAS-KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSV--ETGKV 388 (440)
Q Consensus 314 l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~--~~~~~ 388 (440)
|+++. .++.|.+|++.... ....... .....+ ..-..++++|+|++|+++. ++.|.+|++ ++|.+
T Consensus 259 lyvsnr~~~sI~vf~~d~~~------g~l~~~~--~~~~~G--~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 259 LYVSNRGSNSISVFDLDPAT------GTLTLVQ--TVPTGG--KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKL 328 (345)
T ss_dssp EEEEECTTTEEEEEEECTTT------TTEEEEE--EEEESS--SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EEEEeccCCEEEEEEEecCC------CceEEEE--EEeCCC--CCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcE
Confidence 87665 56789999994221 0111111 000111 1145799999999999875 678998866 56665
Q ss_pred hhhhhccccCCeEEEEe
Q 013578 389 LDTAEKAHEGEITCMAW 405 (440)
Q Consensus 389 ~~~~~~~h~~~v~~v~~ 405 (440)
...-....-....||.|
T Consensus 329 ~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 329 TPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEEEESSSEEEEEE
T ss_pred EEecccccCCCCEEEeC
Confidence 44332123445667665
No 243
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=3.4e-10 Score=93.28 Aligned_cols=285 Identities=17% Similarity=0.174 Sum_probs=169.4
Q ss_pred CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEe--eccccccccccccccCCCCCCc
Q 013578 112 DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYM--YGEEKAISTNEGKQQSKLPGPE 189 (440)
Q Consensus 112 dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 189 (440)
+.-|.+|++++....... .......+.++-++|+|+.+.|.++..++....+.. ++........-...
T Consensus 15 s~gI~v~~ld~~~g~l~~--~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~-------- 84 (346)
T COG2706 15 SQGIYVFNLDTKTGELSL--LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ-------- 84 (346)
T ss_pred CCceEEEEEeCcccccch--hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc--------
Confidence 456999999865443211 122234477899999999999999988744443333 33221111110000
Q ss_pred eeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC-Cceee--eeeCCCCc----------ccEEE
Q 013578 190 IKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT-GKLLG--NVDTNQLK----------NNMAA 256 (440)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~--~~~~~~~~----------v~~~~ 256 (440)
......+.-+..+++|+.++.+.-..|.|.++-++. |.... ....|... +.+..
T Consensus 85 -------------~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~ 151 (346)
T COG2706 85 -------------TLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSAN 151 (346)
T ss_pred -------------ccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceee
Confidence 000111123344778884455555678899998865 33221 11122222 67889
Q ss_pred ecCCCCeEEEEec-CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe-CCCcEEEEecCccccc
Q 013578 257 ISPNGRFLAAAAF-TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS-KDGTLRVWNINVRYHL 334 (440)
Q Consensus 257 ~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~-~dg~i~iwd~~~~~~~ 334 (440)
+.|++++|++.+- --+|.+|++..+.- .. .....++ ....-..|.|+|++++.+..+ -+++|-+|..+.....
T Consensus 152 ~tP~~~~l~v~DLG~Dri~~y~~~dg~L---~~-~~~~~v~-~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~ 226 (346)
T COG2706 152 FTPDGRYLVVPDLGTDRIFLYDLDDGKL---TP-ADPAEVK-PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK 226 (346)
T ss_pred eCCCCCEEEEeecCCceEEEEEcccCcc---cc-ccccccC-CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce
Confidence 9999999998863 34699999975441 11 1222232 345568999999999887666 5899999999864111
Q ss_pred cCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcCC--ccchh-hhhccccCCeEEEEecCCC
Q 013578 335 DEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSVET--GKVLD-TAEKAHEGEITCMAWAPKT 409 (440)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~~--~~~~~-~~~~~h~~~v~~v~~~~~~ 409 (440)
-........++.. .........+..++||++|.++. ...|.+|.+.. +++.. ....-+........|++.+
T Consensus 227 ~~~lQ~i~tlP~d----F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g 302 (346)
T COG2706 227 FEELQTIDTLPED----FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSG 302 (346)
T ss_pred EEEeeeeccCccc----cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCC
Confidence 1111111111111 12233456799999999999986 35788877644 33211 1112344457889999998
Q ss_pred CCCCCCcceEEEEeeCC-CeEEEEeCCC
Q 013578 410 IPMGNQQVSVLATSSVD-KKVKLWLAPS 436 (440)
Q Consensus 410 ~~~~~~~~~~l~t~~~D-g~i~vw~~~~ 436 (440)
++|+.+..| ..|.+|..+.
T Consensus 303 --------~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 303 --------RFLIAANQKSDNITVFERDK 322 (346)
T ss_pred --------CEEEEEccCCCcEEEEEEcC
Confidence 788887774 5688887754
No 244
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=3.6e-12 Score=110.39 Aligned_cols=210 Identities=11% Similarity=0.120 Sum_probs=141.0
Q ss_pred cccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcc---------------------------------------
Q 013578 212 TYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN--------------------------------------- 252 (440)
Q Consensus 212 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v--------------------------------------- 252 (440)
+-.++||++++++|...-.|++||+.+-.....-......|
T Consensus 57 ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~G 136 (703)
T KOG2321|consen 57 IKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFG 136 (703)
T ss_pred eEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCcCC
Confidence 34589999999999999999999987543211110000001
Q ss_pred cEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccc
Q 013578 253 NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRY 332 (440)
Q Consensus 253 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~ 332 (440)
..++++.-.--|++++....|+-+++..+. .+..+....+.++++..++...+|++|+.||.|..||.+...
T Consensus 137 RDm~y~~~scDly~~gsg~evYRlNLEqGr--------fL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGR--------FLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS 208 (703)
T ss_pred ccccccCCCccEEEeecCcceEEEEccccc--------cccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence 112222211124444445566666665554 566666667899999999999999999999999999999765
Q ss_pred cccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCC
Q 013578 333 HLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411 (440)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 411 (440)
......... .+..+........|+++.|+.+|-.+++|. .|.+.|||+++.+++..-..+..-+|..+.|.+.+
T Consensus 209 rv~~l~~~~---~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~-- 283 (703)
T KOG2321|consen 209 RVGTLDAAS---SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTD-- 283 (703)
T ss_pred hheeeeccc---ccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccC--
Confidence 432211111 111122223345689999999999999986 89999999999998776543445589999998763
Q ss_pred CCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 412 MGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 412 ~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
. ...|+|.. ...++|||-.++++
T Consensus 284 ---~-q~~v~S~D-k~~~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 284 ---Q-QNKVVSMD-KRILKIWDECTGKP 306 (703)
T ss_pred ---C-CceEEecc-hHHhhhcccccCCc
Confidence 1 14566654 67899999988764
No 245
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.47 E-value=2.8e-12 Score=118.58 Aligned_cols=184 Identities=19% Similarity=0.297 Sum_probs=142.6
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCc----ccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLK----NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK 296 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 296 (440)
.++..+.+..+.+||...+.....+...... ..-+.++++.-++++|+.-+.|.+|+....+ ....+.
T Consensus 101 ~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn--------~p~~l~ 172 (967)
T KOG0974|consen 101 KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN--------KPIRLK 172 (967)
T ss_pred eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC--------Ccceec
Confidence 5677777778999999877766665443211 1123456777789999999999999987332 222688
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCC
Q 013578 297 GHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS 376 (440)
Q Consensus 297 ~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 376 (440)
+|.+.|.++.|+-||+++++.|.|.++|+|++++...+. ....+|...+.++.|.|+ +++.++.|-
T Consensus 173 GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-------------~~~fgHsaRvw~~~~~~n-~i~t~gedc 238 (967)
T KOG0974|consen 173 GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-------------CTGFGHSARVWACCFLPN-RIITVGEDC 238 (967)
T ss_pred ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-------------cccccccceeEEEEeccc-eeEEeccce
Confidence 999999999999999999999999999999999765432 234578889999999999 444446689
Q ss_pred EEEEEEcCCccchhhhhcccc-CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 377 TLQWLSVETGKVLDTAEKAHE-GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 377 ~i~i~d~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
+.++|+.. ++.+..+. .|. ..|+.++..++. ..++|++.||.+++|++..
T Consensus 239 tcrvW~~~-~~~l~~y~-~h~g~~iw~~~~~~~~--------~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 239 TCRVWGVN-GTQLEVYD-EHSGKGIWKIAVPIGV--------IIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEEEEecc-cceehhhh-hhhhcceeEEEEcCCc--------eEEEeeccCcchhhhhhhc
Confidence 99999654 44444663 554 589999999987 7999999999999999865
No 246
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=4.9e-10 Score=97.24 Aligned_cols=301 Identities=12% Similarity=0.173 Sum_probs=171.2
Q ss_pred CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEee-------cCCcc
Q 013578 91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATH-------NLSGC 163 (440)
Q Consensus 91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-------~~~~~ 163 (440)
..+++..++|++|+++|.+. +..++|++...... .+... . ..+.++.|+|-+.+|.+--. .....
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~----~lt~~--~-~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~p 105 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKV----VLCVE--L-KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNP 105 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcE----EEEec--c-ceeeeeeecccccccccccccccccCCCCCCC
Confidence 33478889999998888765 55799999877641 12111 1 27899999999998876421 12234
Q ss_pred eEEeeccccccccccccccCCC----------------CC-CceeecccccccceeEEEeecccccccCCCCCe-EEEE-
Q 013578 164 SLYMYGEEKAISTNEGKQQSKL----------------PG-PEIKWEHHKVHDKRAILTLFGASATYGTADGST-IIAS- 224 (440)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s- 224 (440)
.+.+|+.+.............- .. ....++.........-...........+|.+.. .+++
T Consensus 106 n~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvy 185 (566)
T KOG2315|consen 106 NVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVY 185 (566)
T ss_pred ceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEE
Confidence 5666666653222211111000 00 011111111111101111111122223333221 2222
Q ss_pred ----eeCCceEEEEeCCCCceeeee---eCCCCcccEEEecCCCCeEE-EEe--cC---------CCEEEEEeEecCCCc
Q 013578 225 ----CSEGTDISIWHGKTGKLLGNV---DTNQLKNNMAAISPNGRFLA-AAA--FT---------ADVKVWEIVYSKDGL 285 (440)
Q Consensus 225 ----~~~d~~i~vwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~-~~~--~d---------g~i~i~d~~~~~~~~ 285 (440)
.+.-..|++|.......-..+ ......-..+.|++.|.-|+ .++ -| .+++++++....
T Consensus 186 vPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s--- 262 (566)
T KOG2315|consen 186 VPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES--- 262 (566)
T ss_pred ccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce---
Confidence 345566888876522211111 11122223467888776433 222 23 347777765111
Q ss_pred eeeeeeeeeeeccccceEEEEEcCCCCEEEEE--eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe
Q 013578 286 VKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA--SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL 363 (440)
Q Consensus 286 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 363 (440)
....+. ..++|.++.|+|+++-++.+ -.-..+.|+|++..-. +... ..+-+++-|
T Consensus 263 -----~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v---------------~df~--egpRN~~~f 319 (566)
T KOG2315|consen 263 -----VSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV---------------FDFP--EGPRNTAFF 319 (566)
T ss_pred -----EEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe---------------EeCC--CCCccceEE
Confidence 233332 47899999999999877654 3566899999984311 1111 122357999
Q ss_pred CCCCCEEEEec----CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeC------CCeEEEEe
Q 013578 364 SSDGKILAATH----GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSV------DKKVKLWL 433 (440)
Q Consensus 364 s~~g~~l~~~~----~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~------Dg~i~vw~ 433 (440)
+|.|++++.++ .|.+.|||+.+.+++..+. ...-+-+.|+||| .+++|+.. |+.++||+
T Consensus 320 np~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~---a~~tt~~eW~PdG--------e~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 320 NPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK---AANTTVFEWSPDG--------EYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred CCCCCEEEEeecCCCCCceEEEeccchhhccccc---cCCceEEEEcCCC--------cEEEEEeccccEEecCCeEEEE
Confidence 99999887643 4899999999988888773 3345678999999 88888875 78899999
Q ss_pred CCC
Q 013578 434 APS 436 (440)
Q Consensus 434 ~~~ 436 (440)
...
T Consensus 389 ytG 391 (566)
T KOG2315|consen 389 YTG 391 (566)
T ss_pred ecC
Confidence 864
No 247
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.45 E-value=2.1e-11 Score=106.19 Aligned_cols=141 Identities=15% Similarity=0.176 Sum_probs=117.2
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeee--CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVD--TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH 298 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h 298 (440)
+++-|...|.|.+|+...++....+. .|.+.|.++.++.+-..|.+++.|+.+..|+..... ....+++.
T Consensus 72 ~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~--------~~~~~~~~ 143 (541)
T KOG4547|consen 72 MLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV--------IIRIWKEQ 143 (541)
T ss_pred EEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce--------eeeeeccC
Confidence 78899999999999999999887775 578889999999999999999999999999986654 67777888
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC-----CCEEEEe
Q 013578 299 KSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD-----GKILAAT 373 (440)
Q Consensus 299 ~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----g~~l~~~ 373 (440)
...+.+++.+|||..+++++. +|++||+++.+.+ ....+|...|++++|-.+ |.++.++
T Consensus 144 ~~~~~sl~is~D~~~l~~as~--~ik~~~~~~kevv--------------~~ftgh~s~v~t~~f~~~~~g~~G~~vLss 207 (541)
T KOG4547|consen 144 KPLVSSLCISPDGKILLTASR--QIKVLDIETKEVV--------------ITFTGHGSPVRTLSFTTLIDGIIGKYVLSS 207 (541)
T ss_pred CCccceEEEcCCCCEEEeccc--eEEEEEccCceEE--------------EEecCCCcceEEEEEEEeccccccceeeec
Confidence 888999999999999999875 8999999987543 334578888999999877 7777775
Q ss_pred c--CCEEEEEEcCC
Q 013578 374 H--GSTLQWLSVET 385 (440)
Q Consensus 374 ~--~~~i~i~d~~~ 385 (440)
. +..+.+|-+..
T Consensus 208 a~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 208 AAAERGITVWVVEK 221 (541)
T ss_pred cccccceeEEEEEc
Confidence 4 45666665543
No 248
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.43 E-value=7.5e-11 Score=107.70 Aligned_cols=171 Identities=18% Similarity=0.157 Sum_probs=105.0
Q ss_pred ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEE-ecCC--CEEEEEeEecCCCceeeeeeeeeeeccccceEEE
Q 013578 229 TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAA-AFTA--DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWL 305 (440)
Q Consensus 229 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 305 (440)
..|++||+.+++.... ......+.+++|+|||+.|+.. +.++ .|++||+..+. ...+..+.......
T Consensus 214 ~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~---------~~~l~~~~~~~~~~ 283 (417)
T TIGR02800 214 PEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ---------LTRLTNGPGIDTEP 283 (417)
T ss_pred cEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC---------EEECCCCCCCCCCE
Confidence 4688999988765432 2334456678999999977654 4444 47777765432 22333344445677
Q ss_pred EEcCCCCEEEEEeC-CC--cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CC---EE
Q 013578 306 CFAPNSEQIITASK-DG--TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GS---TL 378 (440)
Q Consensus 306 ~~~p~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~---~i 378 (440)
.|+|+|++|+..+. ++ .|.++|+.++... .+ . .+........|+|+|++++.+. ++ .|
T Consensus 284 ~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~--------~l----~---~~~~~~~~~~~spdg~~i~~~~~~~~~~~i 348 (417)
T TIGR02800 284 SWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR--------RL----T---FRGGYNASPSWSPDGDLIAFVHREGGGFNI 348 (417)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCEE--------Ee----e---cCCCCccCeEECCCCCEEEEEEccCCceEE
Confidence 89999998876654 33 4777776643211 00 0 0112245689999999888765 33 78
Q ss_pred EEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCC---eEEEEeCC
Q 013578 379 QWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDK---KVKLWLAP 435 (440)
Q Consensus 379 ~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg---~i~vw~~~ 435 (440)
.+||+.++...... .........|+|++ ++|+..+.++ .+.+.+..
T Consensus 349 ~~~d~~~~~~~~l~---~~~~~~~p~~spdg--------~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 349 AVMDLDGGGERVLT---DTGLDESPSFAPNG--------RMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred EEEeCCCCCeEEcc---CCCCCCCceECCCC--------CEEEEEEeCCCcEEEEEEECC
Confidence 99999886543222 12234566899998 6777666654 34454443
No 249
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.42 E-value=3.6e-11 Score=95.71 Aligned_cols=191 Identities=22% Similarity=0.231 Sum_probs=128.7
Q ss_pred EEEEeeCCceEEEEeCCCCce--eeeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeee-eee
Q 013578 221 IIASCSEGTDISIWHGKTGKL--LGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM-QLK 296 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~ 296 (440)
.++++..+|.+.+-+...... ++.++.|+.+.....|+. +.+.+++|+.|+.+..||++..+. .+. ..+
T Consensus 135 ~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~-------~i~~n~k 207 (339)
T KOG0280|consen 135 KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-------FIWHNSK 207 (339)
T ss_pred eEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-------eeeecce
Confidence 455555666666544443332 346778888888888876 457899999999999999984431 222 255
Q ss_pred ccccceEEEEEcC-CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC--CCEEEEe
Q 013578 297 GHKSAVTWLCFAP-NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD--GKILAAT 373 (440)
Q Consensus 297 ~h~~~v~~~~~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~~~ 373 (440)
-|...|.+|.-+| .+.++++|+.|..|++||.++.... +... .....|.++.++|. +++|+++
T Consensus 208 vH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP-------------l~~~-~v~GGVWRi~~~p~~~~~lL~~C 273 (339)
T KOG0280|consen 208 VHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP-------------LFKA-KVGGGVWRIKHHPEIFHRLLAAC 273 (339)
T ss_pred eeecceEEEecCCCCCceEEEeccccceeeeehhcccCc-------------cccC-ccccceEEEEecchhhhHHHHHH
Confidence 6889999998887 5678999999999999999954321 1111 11245888888886 4456665
Q ss_pred cCCEEEEEEcCCccc----hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeC-CCeEE-EEeCCCCCCC
Q 013578 374 HGSTLQWLSVETGKV----LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSV-DKKVK-LWLAPSLESS 440 (440)
Q Consensus 374 ~~~~i~i~d~~~~~~----~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~-Dg~i~-vw~~~~~~~~ 440 (440)
--+..+|.+...+.. .....+.|.+-+..-.|.... ..|+||+- |+.++ +|-.-+++++
T Consensus 274 Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~--------~~lATCsFYDk~~~~~Wl~~t~~~t 338 (339)
T KOG0280|consen 274 MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKD--------SFLATCSFYDKKIRQLWLHITGEPT 338 (339)
T ss_pred HhcCceEEEecccccchheeeeccccccceeecccccccc--------ceeeeeeccccceeeeeeeccCCcC
Confidence 555555665544322 222335788888888885543 57888764 88866 9987777664
No 250
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=3.2e-10 Score=102.33 Aligned_cols=182 Identities=16% Similarity=0.151 Sum_probs=106.0
Q ss_pred eEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec-CC--CEEE--EEeEecCCCceeeeeeeeeeeccccceEE
Q 013578 230 DISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF-TA--DVKV--WEIVYSKDGLVKAVTSVMQLKGHKSAVTW 304 (440)
Q Consensus 230 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~i--~d~~~~~~~~~~~~~~~~~~~~h~~~v~~ 304 (440)
.|.+.++..++..... .........+|+|||+.|+..+. +| .+++ |++..+..+. .......+.+....
T Consensus 212 ~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~-----~~~lt~~~~~~~~~ 285 (428)
T PRK01029 212 KIFLGSLENPAGKKIL-ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGK-----PRRLLNEAFGTQGN 285 (428)
T ss_pred eEEEEECCCCCceEee-cCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCc-----ceEeecCCCCCcCC
Confidence 4777788766543322 22334456899999998887653 33 3333 5554321111 11112222234467
Q ss_pred EEEcCCCCEEEEEe-CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec----CCEEE
Q 013578 305 LCFAPNSEQIITAS-KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH----GSTLQ 379 (440)
Q Consensus 305 ~~~~p~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----~~~i~ 379 (440)
.+|+|||+.|+..+ .+|...+|.+.... .......+ . .....+....|||||+.|+... ...|+
T Consensus 286 p~wSPDG~~Laf~s~~~g~~~ly~~~~~~----~g~~~~~l-----t--~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~ 354 (428)
T PRK01029 286 PSFSPDGTRLVFVSNKDGRPRIYIMQIDP----EGQSPRLL-----T--KKYRNSSCPAWSPDGKKIAFCSVIKGVRQIC 354 (428)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECcc----cccceEEe-----c--cCCCCccceeECCCCCEEEEEEcCCCCcEEE
Confidence 89999999877665 56766666543110 00000101 0 1112345789999999888643 24799
Q ss_pred EEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEe-eC--CCeEEEEeCCCCC
Q 013578 380 WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATS-SV--DKKVKLWLAPSLE 438 (440)
Q Consensus 380 i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~-~~--Dg~i~vw~~~~~~ 438 (440)
+||+.+++..... .....+....|+||+ +.|+.. .. ...|.+|++..++
T Consensus 355 v~dl~~g~~~~Lt--~~~~~~~~p~wSpDG--------~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 355 VYDLATGRDYQLT--TSPENKESPSWAIDS--------LHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred EEECCCCCeEEcc--CCCCCccceEECCCC--------CEEEEEECCCCCceEEEEECCCCC
Confidence 9999988765433 233467789999998 666543 32 3568888887764
No 251
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=8e-12 Score=102.17 Aligned_cols=168 Identities=17% Similarity=0.312 Sum_probs=124.8
Q ss_pred CCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee-ccccceEEEEEcCCC-CEEEEEeCCCcEEEE
Q 013578 249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK-GHKSAVTWLCFAPNS-EQIITASKDGTLRVW 326 (440)
Q Consensus 249 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~-~~l~s~~~dg~i~iw 326 (440)
+..+..++|++.-.-++++..|-.|++||-... ....++ ..+..|+|++|-|.+ ..|+.|+. +-|.+|
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst---------~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW 167 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST---------CPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIW 167 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCC---------CCceecchhhcceeEEEeccCCcceeeeeec-ceeEEE
Confidence 345677899998788899999999999996442 222232 234679999999955 45777776 468999
Q ss_pred ecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcCCccchhhhhccccCCeEEEE
Q 013578 327 NINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSVETGKVLDTAEKAHEGEITCMA 404 (440)
Q Consensus 327 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 404 (440)
............+........+....+| ..|+.+.|.+||..+++++ +..|.|||..++..+.-.. ...+.+.-+.
T Consensus 168 ~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~-~glgg~slLk 245 (445)
T KOG2139|consen 168 SDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP-KGLGGFSLLK 245 (445)
T ss_pred EcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc-cCCCceeeEE
Confidence 8765443322222223333345555666 6699999999999999876 7899999999998776552 4567799999
Q ss_pred ecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 405 WAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 405 ~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
|+||+ .+|+.+.-|+..++|+..+
T Consensus 246 wSPdg--------d~lfaAt~davfrlw~e~q 269 (445)
T KOG2139|consen 246 WSPDG--------DVLFAATCDAVFRLWQENQ 269 (445)
T ss_pred EcCCC--------CEEEEecccceeeeehhcc
Confidence 99999 8999999999999996554
No 252
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.38 E-value=4.9e-11 Score=103.95 Aligned_cols=190 Identities=15% Similarity=0.187 Sum_probs=141.4
Q ss_pred eEEEEeeCCceEEEEeCCCCceeeeeeCC---CCcccEEEec--------------------CCCCeEEEEecCCCEEEE
Q 013578 220 TIIASCSEGTDISIWHGKTGKLLGNVDTN---QLKNNMAAIS--------------------PNGRFLAAAAFTADVKVW 276 (440)
Q Consensus 220 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~---~~~v~~~~~s--------------------~~~~~l~~~~~dg~i~i~ 276 (440)
.+++....||.+++|+...++....+... .+..++..|. -+...++-|...|.|.+|
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y 85 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY 85 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence 38899999999999999988776666431 2223333331 234578888899999999
Q ss_pred EeEecCCCceeeeeeeeee--eccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCC
Q 013578 277 EIVYSKDGLVKAVTSVMQL--KGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGA 354 (440)
Q Consensus 277 d~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (440)
++..++ ....+ ..|.+.|.++.++.+-..|.+++.|+.+..|+......... ....
T Consensus 86 s~~~g~--------it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~--------------~~~~ 143 (541)
T KOG4547|consen 86 SVAGGE--------ITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRI--------------WKEQ 143 (541)
T ss_pred EecCCe--------EEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeee--------------eccC
Confidence 987665 23333 46999999999999989999999999999999986543211 1122
Q ss_pred eeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcc-eEEEEeeCCCeEEEEe
Q 013578 355 TLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQV-SVLATSSVDKKVKLWL 433 (440)
Q Consensus 355 ~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~-~~l~t~~~Dg~i~vw~ 433 (440)
...+.+++.+|||..++++ .+.|.+||+++++.+..+ .+|.++|.++.|..+ +++..+ .+|.+...+.-+.+|-
T Consensus 144 ~~~~~sl~is~D~~~l~~a-s~~ik~~~~~~kevv~~f-tgh~s~v~t~~f~~~---~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 144 KPLVSSLCISPDGKILLTA-SRQIKVLDIETKEVVITF-TGHGSPVRTLSFTTL---IDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred CCccceEEEcCCCCEEEec-cceEEEEEccCceEEEEe-cCCCcceEEEEEEEe---ccccccceeeeccccccceeEEE
Confidence 3346789999999988876 478999999999999999 599999999999877 111111 4555666677788887
Q ss_pred CCC
Q 013578 434 APS 436 (440)
Q Consensus 434 ~~~ 436 (440)
+..
T Consensus 219 v~~ 221 (541)
T KOG4547|consen 219 VEK 221 (541)
T ss_pred EEc
Confidence 654
No 253
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=4e-10 Score=103.01 Aligned_cols=172 Identities=19% Similarity=0.153 Sum_probs=103.5
Q ss_pred ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEE-EecCC--CEEEEEeEecCCCceeeeeeeeeeeccccceEEE
Q 013578 229 TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAA-AAFTA--DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWL 305 (440)
Q Consensus 229 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 305 (440)
..|.+||+.+++... +...........|+|||+.|+. .+.+| .|++||+..+. ...+..+.......
T Consensus 223 ~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~---------~~~lt~~~~~~~~~ 292 (430)
T PRK00178 223 PRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ---------LSRVTNHPAIDTEP 292 (430)
T ss_pred CEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC---------eEEcccCCCCcCCe
Confidence 358888988776533 2222334557899999998875 44455 47777775443 22344455556778
Q ss_pred EEcCCCCEEEEEeC-CC--cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--C--CEE
Q 013578 306 CFAPNSEQIITASK-DG--TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--G--STL 378 (440)
Q Consensus 306 ~~~p~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~--~~i 378 (440)
.|+|||+.|+..+. ++ .|.++|+.++... .+. ..+ .......|+|||++|+... + ..|
T Consensus 293 ~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~--------~lt-----~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l 357 (430)
T PRK00178 293 FWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE--------RVT-----FVG--NYNARPRLSADGKTLVMVHRQDGNFHV 357 (430)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCEE--------Eee-----cCC--CCccceEECCCCCEEEEEEccCCceEE
Confidence 99999998776553 34 4666676654321 000 001 1123478999999988754 2 268
Q ss_pred EEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeC-CC--eEEEEeCCC
Q 013578 379 QWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSV-DK--KVKLWLAPS 436 (440)
Q Consensus 379 ~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~-Dg--~i~vw~~~~ 436 (440)
.++|+.+++..... +........|+|++ ++|+..+. +| .+.+++++.
T Consensus 358 ~~~dl~tg~~~~lt---~~~~~~~p~~spdg--------~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 358 AAQDLQRGSVRILT---DTSLDESPSVAPNG--------TMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred EEEECCCCCEEEcc---CCCCCCCceECCCC--------CEEEEEEecCCceEEEEEECCC
Confidence 89999887653322 12223356899998 66665544 33 456666643
No 254
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.37 E-value=7.7e-12 Score=121.87 Aligned_cols=232 Identities=15% Similarity=0.216 Sum_probs=155.7
Q ss_pred ccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEE
Q 013578 87 LKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLY 166 (440)
Q Consensus 87 l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~ 166 (440)
++.|-..|.++.-+|...+-+||+.||.|++|....+... .+.+ ......|+.+.|+.+|..
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v--~~~r--t~g~s~vtr~~f~~qGnk-------------- 2265 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQV--VCFR--TAGNSRVTRSRFNHQGNK-------------- 2265 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeE--EEee--ccCcchhhhhhhcccCCc--------------
Confidence 4456778999999998899999999999999998765432 1222 222266777777766553
Q ss_pred eeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeee
Q 013578 167 MYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD 246 (440)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 246 (440)
+..+..||.+.+|... .++....+
T Consensus 2266 -------------------------------------------------------~~i~d~dg~l~l~q~~-pk~~~s~q 2289 (2439)
T KOG1064|consen 2266 -------------------------------------------------------FGIVDGDGDLSLWQAS-PKPYTSWQ 2289 (2439)
T ss_pred -------------------------------------------------------eeeeccCCceeecccC-Ccceeccc
Confidence 3444557778888876 56666777
Q ss_pred CCCCcccEEEecCCCCeEEEEe---cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcE
Q 013578 247 TNQLKNNMAAISPNGRFLAAAA---FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTL 323 (440)
Q Consensus 247 ~~~~~v~~~~~s~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i 323 (440)
.|......+.|-. ..+++++ .++.+.+||....... ..+. ..|.+.++++++-|....|++|+.+|.|
T Consensus 2290 chnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~-----s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v 2360 (2439)
T KOG1064|consen 2290 CHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN-----SLVH--TCHDGGATVLAYAPKHQLLISGGRKGEV 2360 (2439)
T ss_pred cCCccccceeeee--hhhhccccCCCCCcccchhcccCccc-----ceee--eecCCCceEEEEcCcceEEEecCCcCcE
Confidence 7777777776654 4556554 5788999997543311 1233 7799999999999999999999999999
Q ss_pred EEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEE
Q 013578 324 RVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITC 402 (440)
Q Consensus 324 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~ 402 (440)
++||++.++.....+ ++. ...++++|+ .|.++||++..-..+..+...|.. ..
T Consensus 2361 ~l~D~rqrql~h~~~-----------------------~~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak--~g 2414 (2439)
T KOG1064|consen 2361 CLFDIRQRQLRHTFQ-----------------------ALD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAK--QG 2414 (2439)
T ss_pred EEeehHHHHHHHHhh-----------------------hhh-hhheeeccCcccceEEEEccccchhhcCchhhcc--cc
Confidence 999999765432111 022 344667665 899999999988887776533421 11
Q ss_pred EEecCCCCCCCCCcceEEEEeeCCCe
Q 013578 403 MAWAPKTIPMGNQQVSVLATSSVDKK 428 (440)
Q Consensus 403 v~~~~~~~~~~~~~~~~l~t~~~Dg~ 428 (440)
+ |-..|.-..-+....|.+|+.||+
T Consensus 2415 f-Fr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2415 F-FRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred h-hhhcCceeeeccCceEEEecCCCC
Confidence 1 222210000111257888888874
No 255
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=4.2e-11 Score=101.85 Aligned_cols=268 Identities=12% Similarity=0.151 Sum_probs=172.3
Q ss_pred EecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccc
Q 013578 132 RINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASA 211 (440)
Q Consensus 132 ~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (440)
.....|.+-|..|.|...|..+++++.+ ..+.+|+-...... .+...+|...++...+.
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD---~~vv~WdW~~~~~~---------------l~f~SGH~~NvfQaKFi--- 194 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDD---LQVVVWDWVSGSPK---------------LSFESGHCNNVFQAKFI--- 194 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCcc---ceEEeehhhccCcc---------------cccccccccchhhhhcc---
Confidence 3456788999999999999999998877 44444443332111 11122333322222221
Q ss_pred cccCCCCCeEEEEeeCCceEEEEeCCC-Cce--eeeeeCCCCcccEEEecCCC-CeEEEEecCCCEEEEEeEecCCCcee
Q 013578 212 TYGTADGSTIIASCSEGTDISIWHGKT-GKL--LGNVDTNQLKNNMAAISPNG-RFLAAAAFTADVKVWEIVYSKDGLVK 287 (440)
Q Consensus 212 ~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~--~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~ 287 (440)
...+..-+++++.||.|++=.+.. +.+ ...+..|.+++..++.-|+. ..|.+++.|+.+.-+|++.......
T Consensus 195 ---P~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~- 270 (559)
T KOG1334|consen 195 ---PFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK- 270 (559)
T ss_pred ---CCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccce-
Confidence 122333799999999999876543 322 34556788999999998854 6788999999999999987652211
Q ss_pred eeeeeeeeecccc---ceEEEEEcCCCC-EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe
Q 013578 288 AVTSVMQLKGHKS---AVTWLCFAPNSE-QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL 363 (440)
Q Consensus 288 ~~~~~~~~~~h~~---~v~~~~~~p~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 363 (440)
...-..+.. ....++..|... .+++++.|..+++||.+....-.... .+..+. +.+........|++++|
T Consensus 271 ----~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~-~~~~f~-p~hl~~d~~v~ITgl~Y 344 (559)
T KOG1334|consen 271 ----FVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNG-VLDKFC-PHHLVEDDPVNITGLVY 344 (559)
T ss_pred ----eeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccc-hhhhcC-CccccccCcccceeEEe
Confidence 112222333 467889999665 78999999999999988543221111 111111 11222245567999999
Q ss_pred CCCC-CEEEEecCCEEEEEEcCC--c----------cchhhhhccccC--CeEEEEec-CCCCCCCCCcceEEEEeeCCC
Q 013578 364 SSDG-KILAATHGSTLQWLSVET--G----------KVLDTAEKAHEG--EITCMAWA-PKTIPMGNQQVSVLATSSVDK 427 (440)
Q Consensus 364 s~~g-~~l~~~~~~~i~i~d~~~--~----------~~~~~~~~~h~~--~v~~v~~~-~~~~~~~~~~~~~l~t~~~Dg 427 (440)
+.++ .+|++-.|-.|+++.-.- | ..+...-++|.. .|..+-|- |.. .++++|+.-|
T Consensus 345 sh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs--------EyVvSGSDCG 416 (559)
T KOG1334|consen 345 SHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS--------EYVVSGSDCG 416 (559)
T ss_pred cCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc--------ceEEecCccc
Confidence 9665 577777799999995432 3 223332267765 57777664 554 7999999999
Q ss_pred eEEEEeCCCCC
Q 013578 428 KVKLWLAPSLE 438 (440)
Q Consensus 428 ~i~vw~~~~~~ 438 (440)
.|.||+-.+++
T Consensus 417 hIFiW~K~t~e 427 (559)
T KOG1334|consen 417 HIFIWDKKTGE 427 (559)
T ss_pred eEEEEecchhH
Confidence 99999977654
No 256
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.36 E-value=2.6e-10 Score=100.16 Aligned_cols=193 Identities=14% Similarity=0.160 Sum_probs=127.2
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~ 300 (440)
++++-..++.|.+.|..+.+.+..+.........+.++|||+++++++.||.|.++|+.+.+ .+.+++.. .
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~--------~v~~i~~G-~ 78 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK--------VVATIKVG-G 78 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS--------EEEEEE-S-S
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc--------EEEEEecC-C
Confidence 45667778999999999999999998755444557899999999999999999999997765 55556543 3
Q ss_pred ceEEEEEcCCCCEEEEEe-CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-ec-CCE
Q 013578 301 AVTWLCFAPNSEQIITAS-KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-TH-GST 377 (440)
Q Consensus 301 ~v~~~~~~p~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~-~~~ 377 (440)
...++++++||+++++++ .++.+.++|.++.+.+.. ++............+..+..+|....++. -. .+.
T Consensus 79 ~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~-------I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~ 151 (369)
T PF02239_consen 79 NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKT-------IPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGE 151 (369)
T ss_dssp EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEE-------EE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTE
T ss_pred CcceEEEcCCCCEEEEEecCCCceeEeccccccceee-------cccccccccccCCCceeEEecCCCCEEEEEEccCCe
Confidence 467899999999988765 689999999987655432 21111111123445667888898885444 34 488
Q ss_pred EEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEE-eeCCCeEEEEeCCCC
Q 013578 378 LQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLAT-SSVDKKVKLWLAPSL 437 (440)
Q Consensus 378 i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t-~~~Dg~i~vw~~~~~ 437 (440)
|.+.|....+.+............+..|+|++ ++++. ...+..|-++|..++
T Consensus 152 I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdg--------ry~~va~~~sn~i~viD~~~~ 204 (369)
T PF02239_consen 152 IWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDG--------RYFLVAANGSNKIAVIDTKTG 204 (369)
T ss_dssp EEEEETTTSSCEEEEEEE--TTEEEEEE-TTS--------SEEEEEEGGGTEEEEEETTTT
T ss_pred EEEEEeccccccceeeecccccccccccCccc--------ceeeecccccceeEEEeeccc
Confidence 88889877654432112244567789999998 66655 455778888988765
No 257
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.36 E-value=1.1e-09 Score=93.97 Aligned_cols=277 Identities=14% Similarity=0.135 Sum_probs=170.7
Q ss_pred cceeEEEEccCCCEEEEeeCCC---------------cEEEEecCCCCCcceeeEEecCCCCCC--Cc-eEEEccCCCeE
Q 013578 92 DSVTGLCFSSDGKCLATACADG---------------VIRVHKLDDASSKSFKFLRINLPPGGP--PT-AVAFADNATSI 153 (440)
Q Consensus 92 ~~V~~l~~s~dg~~l~t~s~dg---------------~v~vW~~~~~~~~~~~~~~~~~~~~~~--v~-~v~~~~~~~~l 153 (440)
..|.-+.|||.++||.|=+..+ .+.+||+.++.. ...+.....+ .. -+.|+-+.++.
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~i-----v~sf~~~~q~~~~Wp~~k~s~~D~y~ 146 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMI-----VFSFNGISQPYLGWPVLKFSIDDKYV 146 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCcee-----EeeccccCCcccccceeeeeecchhh
Confidence 4689999999999999966543 499999987742 2222222222 33 57788888876
Q ss_pred EEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCC--CCeEEE-----Eee
Q 013578 154 VVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTAD--GSTIIA-----SCS 226 (440)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~-----s~~ 226 (440)
+-... ..+++++....................+.| +|. +. .|+ ...
T Consensus 147 ARvv~----~sl~i~e~t~n~~~~p~~~lr~~gi~dFsi----------------------sP~~n~~-~la~~tPEk~~ 199 (561)
T COG5354 147 ARVVG----SSLYIHEITDNIEEHPFKNLRPVGILDFSI----------------------SPEGNHD-ELAYWTPEKLN 199 (561)
T ss_pred hhhcc----CeEEEEecCCccccCchhhccccceeeEEe----------------------cCCCCCc-eEEEEccccCC
Confidence 65532 356666642221111111110000001111 121 11 122 135
Q ss_pred CCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEe-----------cCCCEEEEEeEecCCCceeeeeeeeee
Q 013578 227 EGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAA-----------FTADVKVWEIVYSKDGLVKAVTSVMQL 295 (440)
Q Consensus 227 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~~~ 295 (440)
..+.+++|.+..+..+.+.......-..+.|++.|++|++-. ...+++|+++.... +...
T Consensus 200 kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~---------i~V~ 270 (561)
T COG5354 200 KPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS---------IPVE 270 (561)
T ss_pred CCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc---------ccee
Confidence 678899999987777665544444446789999999877542 12457788875322 2222
Q ss_pred eccccceEEEEEcCCCCEEEEEe--CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe
Q 013578 296 KGHKSAVTWLCFAPNSEQIITAS--KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT 373 (440)
Q Consensus 296 ~~h~~~v~~~~~~p~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 373 (440)
....++|..++|.|.++.+++.+ .+-.+.++|++..-.. ..+ ...=+.+.|+|.+++++.+
T Consensus 271 ~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~-~~P----------------e~~rNT~~fsp~~r~il~a 333 (561)
T COG5354 271 KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRF-YFP----------------EQKRNTIFFSPHERYILFA 333 (561)
T ss_pred ccccccceeeeecccCCceeEEecccccceeecccccceEE-ecC----------------CcccccccccCcccEEEEe
Confidence 25678999999999998876655 6788999999864211 000 1112358899999988874
Q ss_pred c----CCEEEEEEcCCccchh-hhhccccCCeEEEEecCCCCCCCCCcceEEEEee------CCCeEEEEeCCCC
Q 013578 374 H----GSTLQWLSVETGKVLD-TAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSS------VDKKVKLWLAPSL 437 (440)
Q Consensus 374 ~----~~~i~i~d~~~~~~~~-~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~------~Dg~i~vw~~~~~ 437 (440)
. .|.+.+||........ .+ ......-+.|+|++ .++.+.. .|..|+||++...
T Consensus 334 gF~nl~gni~i~~~~~rf~~~~~~---~~~n~s~~~wspd~--------qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 334 GFDNLQGNIEIFDPAGRFKVAGAF---NGLNTSYCDWSPDG--------QFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred cCCccccceEEeccCCceEEEEEe---ecCCceEeeccCCc--------eEEEecCCCcccccCcceEEEEecCc
Confidence 3 3799999988766554 33 23345667899998 6666553 2889999998654
No 258
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=9.3e-10 Score=100.23 Aligned_cols=171 Identities=18% Similarity=0.163 Sum_probs=99.5
Q ss_pred eEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEE-EecCCC--EEEEEeEecCCCceeeeeeeeeeeccccceEEEE
Q 013578 230 DISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAA-AAFTAD--VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLC 306 (440)
Q Consensus 230 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 306 (440)
.|++||+.+++... +..........+|+|||+.|+. .+.+|. |+++|+..+. ...+..+.......+
T Consensus 243 ~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~---------~~~lt~~~~~~~~p~ 312 (448)
T PRK04792 243 EIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA---------LTRITRHRAIDTEPS 312 (448)
T ss_pred EEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC---------eEECccCCCCccceE
Confidence 48888888776432 2222233456899999998875 456676 5555654332 233444555567889
Q ss_pred EcCCCCEEEEEeC-CCc--EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CC--EEE
Q 013578 307 FAPNSEQIITASK-DGT--LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GS--TLQ 379 (440)
Q Consensus 307 ~~p~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~--~i~ 379 (440)
|+|||++|+..+. ++. |.++|+.++... .+. ..+. .....+|+|||++|+... ++ .|.
T Consensus 313 wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~--------~Lt-----~~g~--~~~~~~~SpDG~~l~~~~~~~g~~~I~ 377 (448)
T PRK04792 313 WHPDGKSLIFTSERGGKPQIYRVNLASGKVS--------RLT-----FEGE--QNLGGSITPDGRSMIMVNRTNGKFNIA 377 (448)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCEE--------EEe-----cCCC--CCcCeeECCCCCEEEEEEecCCceEEE
Confidence 9999998876553 444 555566543211 000 0111 123468999999887643 33 567
Q ss_pred EEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEee-CCCe--EEEEeCCC
Q 013578 380 WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSS-VDKK--VKLWLAPS 436 (440)
Q Consensus 380 i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~-~Dg~--i~vw~~~~ 436 (440)
++|+.+++..... .. .......|+|++ ++|+..+ .+|. +.+++.+.
T Consensus 378 ~~dl~~g~~~~lt-~~--~~d~~ps~spdG--------~~I~~~~~~~g~~~l~~~~~~G 426 (448)
T PRK04792 378 RQDLETGAMQVLT-ST--RLDESPSVAPNG--------TMVIYSTTYQGKQVLAAVSIDG 426 (448)
T ss_pred EEECCCCCeEEcc-CC--CCCCCceECCCC--------CEEEEEEecCCceEEEEEECCC
Confidence 7888887653222 11 122345799998 5655544 4443 66666643
No 259
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=8.6e-12 Score=107.84 Aligned_cols=293 Identities=14% Similarity=0.206 Sum_probs=180.3
Q ss_pred cccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCc--ceeeEEecCCCCCCCceEEEccCCCeEEEEeec
Q 013578 82 LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSK--SFKFLRINLPPGGPPTAVAFADNATSIVVATHN 159 (440)
Q Consensus 82 ~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~--~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~ 159 (440)
..+..+.||+..|+.++--.+.+-+++++.|++|++|.+...... ...+.-....|..+|.++.|..+.++++++.
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD-- 803 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCD-- 803 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeecc--
Confidence 356789999999999998888889999999999999998754321 2234456677889999999999999888774
Q ss_pred CCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC
Q 013578 160 LSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG 239 (440)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 239 (440)
..+.+|+.-....... ..|....+... .+.. .-+-+....++.|+...+|+++|.+..
T Consensus 804 ---~giHlWDPFigr~Laq-----------~~dapk~~a~~-~ikc-------l~nv~~~iliAgcsaeSTVKl~DaRsc 861 (1034)
T KOG4190|consen 804 ---GGIHLWDPFIGRLLAQ-----------MEDAPKEGAGG-NIKC-------LENVDRHILIAGCSAESTVKLFDARSC 861 (1034)
T ss_pred ---CcceeecccccchhHh-----------hhcCcccCCCc-eeEe-------cccCcchheeeeccchhhheeeecccc
Confidence 4567776544321110 11111110000 0000 001122224455588899999999988
Q ss_pred ceeeeee-----CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEE
Q 013578 240 KLLGNVD-----TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQI 314 (440)
Q Consensus 240 ~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l 314 (440)
+....++ +....++++++.+.|++++++-.+|.|.+.|.++++ .+..++...-....++ .|..+.|
T Consensus 862 e~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~--------vINswrpmecdllqla-apsdq~L 932 (1034)
T KOG4190|consen 862 EWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK--------VINSWRPMECDLLQLA-APSDQAL 932 (1034)
T ss_pred cceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc--------eeccCCcccchhhhhc-CchhHHH
Confidence 7665554 344568899999999999999999999999998776 3444443333344443 3556677
Q ss_pred EEEeCCCcEEE-EecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCc-cc---
Q 013578 315 ITASKDGTLRV-WNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETG-KV--- 388 (440)
Q Consensus 315 ~s~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~-~~--- 388 (440)
+....|.++.+ |..-.+....+..... .+ .|- +-.-|.-|++.. ++.+.+|.-... ..
T Consensus 933 ~~saldHslaVnWhaldgimh~q~kppp----ep-----ahf-------lqsvgpSLV~a~~Gn~lgVYad~a~~ha~st 996 (1034)
T KOG4190|consen 933 AQSALDHSLAVNWHALDGIMHLQDKPPP----EP-----AHF-------LQSVGPSLVTAQNGNILGVYADSAELHAEST 996 (1034)
T ss_pred HhhcccceeEeeehhcCCeeeeccCCCC----cc-----hhh-------hhccCceeEEeccCcEEEEEecchhhhhhhh
Confidence 77778888888 8655432211110000 00 000 011244455544 445566632111 11
Q ss_pred hhhh-hccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEE
Q 013578 389 LDTA-EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKL 431 (440)
Q Consensus 389 ~~~~-~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~v 431 (440)
+..+ .....+..++++--|-+ .-+..|.+.|.|.+
T Consensus 997 itKiR~d~f~G~lTala~LPLN--------~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 997 ITKIRPDEFPGTLTALAPLPLN--------CAFLAGNEHGAIAL 1032 (1034)
T ss_pred hccccccccCCccceeeecccc--------chhhccCCCCceee
Confidence 1111 01234677888888876 67778888888875
No 260
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.35 E-value=3.3e-11 Score=96.76 Aligned_cols=173 Identities=13% Similarity=0.224 Sum_probs=111.0
Q ss_pred CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccc-----cceEEEEEcCCC-CEEEEEeCC
Q 013578 247 TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK-----SAVTWLCFAPNS-EQIITASKD 320 (440)
Q Consensus 247 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~p~~-~~l~s~~~d 320 (440)
.|...+.++.++.|...++++ .|-.|.+|++..... .+ .+..++.|. .-|++..|+|.. ..+.-.+..
T Consensus 170 aH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~----sF-nIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSk 243 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDG----SF-NIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSK 243 (460)
T ss_pred cceeEeeeeeecCchheeeec-cceeeeeccccccCC----ce-EEEeccCccHHHHHHHHhhcccCHhHcceEEEecCC
Confidence 456667889999988888777 478899999865431 11 233344443 458899999954 445556678
Q ss_pred CcEEEEecCccccccCCCCccccc--cccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCcc-chhhhhccc-
Q 013578 321 GTLRVWNINVRYHLDEDPKTLKVL--PIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGK-VLDTAEKAH- 396 (440)
Q Consensus 321 g~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~-~~~~~~~~h- 396 (440)
|.|++-|++............... +.......+-...|..+.|+++|+++++-+--++.+||+...+ ++.++ ..|
T Consensus 244 G~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi-~~h~ 322 (460)
T COG5170 244 GEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTI-PMHC 322 (460)
T ss_pred CcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceee-chHH
Confidence 999999999544332211111110 0011111222345788999999999999999999999997654 34433 122
Q ss_pred -----------cCCeE---EEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578 397 -----------EGEIT---CMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA 434 (440)
Q Consensus 397 -----------~~~v~---~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~ 434 (440)
.+.|. .+.|+.|. ..+++|+..+..-++-.
T Consensus 323 ~l~~~l~d~YEnDaifdkFeisfSgd~--------~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 323 DLMDELNDVYENDAIFDKFEISFSGDD--------KHVLSGSYSNNFGIYPT 366 (460)
T ss_pred HHHHHHHhhhhccceeeeEEEEecCCc--------ccccccccccceeeecc
Confidence 22333 46788776 78888888777777654
No 261
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.35 E-value=7e-09 Score=89.10 Aligned_cols=282 Identities=10% Similarity=0.027 Sum_probs=156.7
Q ss_pred CcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEee---------cCCcceEEeeccccccccccccccC
Q 013578 113 GVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATH---------NLSGCSLYMYGEEKAISTNEGKQQS 183 (440)
Q Consensus 113 g~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (440)
++|.+.|..+.+. +.. ..-+.....+ ++||++.++++.. + ...+.+++........+.....
T Consensus 27 ~~v~ViD~~~~~v-----~g~-i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~--~d~V~v~D~~t~~~~~~i~~p~ 97 (352)
T TIGR02658 27 TQVYTIDGEAGRV-----LGM-TDGGFLPNPV-VASDGSFFAHASTVYSRIARGKR--TDYVEVIDPQTHLPIADIELPE 97 (352)
T ss_pred ceEEEEECCCCEE-----EEE-EEccCCCcee-ECCCCCEEEEEeccccccccCCC--CCEEEEEECccCcEEeEEccCC
Confidence 7899999887542 211 1222333444 9999999999876 3 2456666655543222111100
Q ss_pred CCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeC-CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCC
Q 013578 184 KLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSE-GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGR 262 (440)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 262 (440)
. .............+++||+.++++.-. +..|.+.|+.+++.+.++..... ..-...+.+..
T Consensus 98 ~----------------p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~~vy~t~e~~~ 160 (352)
T TIGR02658 98 G----------------PRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-YHIFPTANDTF 160 (352)
T ss_pred C----------------chhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-cEEEEecCCcc
Confidence 0 000011122234458999955555534 88999999999999998876432 22222222222
Q ss_pred eEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEE-EEEcC-CCCEEEEEeCCCcEEEEecCccccccCCCCc
Q 013578 263 FLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTW-LCFAP-NSEQIITASKDGTLRVWNINVRYHLDEDPKT 340 (440)
Q Consensus 263 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 340 (440)
+ +-+.||......+..... .. ......+.+...++.. -.|.+ +|++++.... |+|.+.|+........ ..
T Consensus 161 ~--~~~~Dg~~~~v~~d~~g~--~~-~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~--~~ 232 (352)
T TIGR02658 161 F--MHCRDGSLAKVGYGTKGN--PK-IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL--PA 232 (352)
T ss_pred E--EEeecCceEEEEecCCCc--eE-EeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceec--ce
Confidence 2 223455554443322221 11 0011111111111110 03455 8888777766 9999999754321110 11
Q ss_pred cccccccccCCCCCeeeeeeEEeCCCCCEEEEec-----------CCEEEEEEcCCccchhhhhccccCCeEEEEecCCC
Q 013578 341 LKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-----------GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKT 409 (440)
Q Consensus 341 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----------~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~ 409 (440)
...+........-....+.-++++++++.+.+.. .+.|.++|..+++.+..+.. ...+..++++||+
T Consensus 233 ~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v--G~~~~~iavS~Dg 310 (352)
T TIGR02658 233 IEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL--GHEIDSINVSQDA 310 (352)
T ss_pred eeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC--CCceeeEEECCCC
Confidence 1111111000011122233499999998776621 26899999999999998863 4479999999998
Q ss_pred CCCCCCcce-EEEEee-CCCeEEEEeCCCCC
Q 013578 410 IPMGNQQVS-VLATSS-VDKKVKLWLAPSLE 438 (440)
Q Consensus 410 ~~~~~~~~~-~l~t~~-~Dg~i~vw~~~~~~ 438 (440)
+ +|++.. .++.|.+.|..+++
T Consensus 311 --------kp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 311 --------KPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred --------CeEEEEeCCCCCcEEEEECcCCe
Confidence 5 666554 68899999998875
No 262
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.33 E-value=6.1e-09 Score=88.83 Aligned_cols=129 Identities=10% Similarity=0.109 Sum_probs=94.7
Q ss_pred EecCCCCeEEEEecCC-CEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccc
Q 013578 256 AISPNGRFLAAAAFTA-DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHL 334 (440)
Q Consensus 256 ~~s~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~ 334 (440)
.+.-+++-++.|..|| .+-|||.+.+. +..+...-+.|.++..+|+|++++.+.....+.+.|+.++...
T Consensus 366 r~~~~~e~~vigt~dgD~l~iyd~~~~e---------~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~ 436 (668)
T COG4946 366 RIQVDPEGDVIGTNDGDKLGIYDKDGGE---------VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR 436 (668)
T ss_pred EEccCCcceEEeccCCceEEEEecCCce---------EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee
Confidence 3444555677777777 78888876543 5556667788999999999999999988889999999876432
Q ss_pred cCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-----CCEEEEEEcCCccchhhhhccccCCeEEEEecCCC
Q 013578 335 DEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-----GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKT 409 (440)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~ 409 (440)
. .......-|+...|+|+++++|-+. ...|++||+..++...... ..+.=.+-+|.|++
T Consensus 437 ~--------------idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT--~ta~DfsPaFD~d~ 500 (668)
T COG4946 437 L--------------IDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT--PTAYDFSPAFDPDG 500 (668)
T ss_pred E--------------ecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC--CcccccCcccCCCC
Confidence 1 1122234588999999999999874 3689999999988765432 33344566788887
No 263
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.28 E-value=1.6e-09 Score=85.44 Aligned_cols=175 Identities=11% Similarity=0.009 Sum_probs=119.2
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~ 300 (440)
.+..++.|.++++.++.-+.........+-.+..+.++++++++++.+....|-.|.+.....-. .........+
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~-----~~~~~a~t~D 204 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYI-----ENIYEAPTSD 204 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCcccee-----eeeEecccCC
Confidence 46677888888888876543333332222347789999999999999999999999987554211 1112333445
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC--EEEEe-cCCE
Q 013578 301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK--ILAAT-HGST 377 (440)
Q Consensus 301 ~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~-~~~~ 377 (440)
.=.+..|+.....+|++..||++.|||++....... ........|...+..+.|++.|. +|... .-+.
T Consensus 205 ~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~---------~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~ 275 (344)
T KOG4532|consen 205 HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA---------EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSR 275 (344)
T ss_pred CceeeeeccCcceEEEEecCCcEEEEEecccccchh---------hhcccCCCCCCceEEEEecCCCcceEEEEecCcce
Confidence 557889999999999999999999999985432211 11223345777899999998765 33333 4688
Q ss_pred EEEEEcCCccchhhhh------cccc-CCeEEEEecCCC
Q 013578 378 LQWLSVETGKVLDTAE------KAHE-GEITCMAWAPKT 409 (440)
Q Consensus 378 i~i~d~~~~~~~~~~~------~~h~-~~v~~v~~~~~~ 409 (440)
+.+.|+++++..+.+. ..|. ..|..-.|+.++
T Consensus 276 ~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n 314 (344)
T KOG4532|consen 276 VHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNEN 314 (344)
T ss_pred EEEEEcccCceeeEEecCccccccccccccccccccCCC
Confidence 9999999887544331 1233 347777888776
No 264
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.28 E-value=1.5e-10 Score=96.28 Aligned_cols=158 Identities=14% Similarity=0.151 Sum_probs=112.2
Q ss_pred cEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC---CCcEEEEecC
Q 013578 253 NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK---DGTLRVWNIN 329 (440)
Q Consensus 253 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~---dg~i~iwd~~ 329 (440)
..+..++.++++|++..+....+++++.... ..+....... ...-+.+.|..+......+.. ...+.+|...
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~----~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPK----GAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSAD 140 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCC----cceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeeccc
Confidence 3456788899999999999988998876552 1112222221 122234444444444444333 3344445443
Q ss_pred ccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCC
Q 013578 330 VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPK 408 (440)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~ 408 (440)
.+ .....-+|...++.++|+||++++.+++ |..|++-.......+..+.-||..-|..++.-++
T Consensus 141 ~~---------------~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~ 205 (390)
T KOG3914|consen 141 SG---------------RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN 205 (390)
T ss_pred cc---------------CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC
Confidence 21 1122346777789999999999999998 8999999888888888887899999999999998
Q ss_pred CCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 409 TIPMGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 409 ~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
..|++||.|++|++||+.++++
T Consensus 206 ---------~~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 206 ---------YLLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred ---------ceeeecCCCCcEEEEecccCCc
Confidence 4799999999999999999875
No 265
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.26 E-value=1.2e-08 Score=87.79 Aligned_cols=250 Identities=16% Similarity=0.129 Sum_probs=131.3
Q ss_pred EccCCCEEEEeeC----------CCcEEEEecCCCCCcceeeEEecCC------CCCCCceEEEccCCCeEEEEeecCCc
Q 013578 99 FSSDGKCLATACA----------DGVIRVHKLDDASSKSFKFLRINLP------PGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 99 ~s~dg~~l~t~s~----------dg~v~vW~~~~~~~~~~~~~~~~~~------~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
+||||+.|+.+.. +..|.+||..+.+... ....+ .......++++|||+++++...+. .
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~----~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p-~ 127 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA----DIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSP-S 127 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe----EEccCCCchhhccCccceEEECCCCCEEEEecCCC-C
Confidence 9999998887755 7899999999875321 11111 123345889999999999876441 2
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL 242 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 242 (440)
..+.+.+........+... + . ...+...........+.||....++-..+|....=. .
T Consensus 128 ~~V~VvD~~~~kvv~ei~v------p---------~-~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~------~ 185 (352)
T TIGR02658 128 PAVGVVDLEGKAFVRMMDV------P---------D-CYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP------T 185 (352)
T ss_pred CEEEEEECCCCcEEEEEeC------C---------C-CcEEEEecCCccEEEeecCceEEEEecCCCceEEee------e
Confidence 3444444433311110000 0 0 000000000001111222322222222222211000 0
Q ss_pred eeeeCCCCccc-EEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee-----ccccceEEEEEcCCCCEEE
Q 013578 243 GNVDTNQLKNN-MAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK-----GHKSAVTWLCFAPNSEQII 315 (440)
Q Consensus 243 ~~~~~~~~~v~-~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~p~~~~l~ 315 (440)
..+.....++. .-.+.+ +|+++++..+ |+|.+.|+..........+... ... -..+.+.-++++|++++++
T Consensus 186 ~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~-~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 186 EVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAF-TEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeec-cccccccccCCCcceeEEEcCCCCEEE
Confidence 00111000100 003455 8888877766 9999999644321111111111 111 1233445599999999887
Q ss_pred EEe----------CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEec--CCEEEEEE
Q 013578 316 TAS----------KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATH--GSTLQWLS 382 (440)
Q Consensus 316 s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~--~~~i~i~d 382 (440)
... ..+.|.++|..+.+.+..... ...+..++++||++ +|.+.+ ++.|.++|
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---------------G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---------------GHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEEEEeC---------------CCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 743 124799999987755432110 11356799999999 776654 68899999
Q ss_pred cCCccchhhh
Q 013578 383 VETGKVLDTA 392 (440)
Q Consensus 383 ~~~~~~~~~~ 392 (440)
..+++.+..+
T Consensus 329 ~~t~k~i~~i 338 (352)
T TIGR02658 329 AETGKELSSV 338 (352)
T ss_pred CcCCeEEeee
Confidence 9999988877
No 266
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.25 E-value=1e-08 Score=102.18 Aligned_cols=175 Identities=15% Similarity=0.145 Sum_probs=105.1
Q ss_pred cEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeee---eeeeeec------cccceEEEEEcCCCCEE-EEEeCCC
Q 013578 253 NMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVT---SVMQLKG------HKSAVTWLCFAPNSEQI-ITASKDG 321 (440)
Q Consensus 253 ~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~------h~~~v~~~~~~p~~~~l-~s~~~dg 321 (440)
..++++| ++.++++.+.++.|++||...+.. .... ......+ .-.....|+++|++..| ++-+.++
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v---~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~ 762 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT---RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESS 762 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeE---EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCC
Confidence 5789999 556666666788999999754320 0000 0000001 11245679999999854 4556678
Q ss_pred cEEEEecCccccccC---CCCccc-cccccccCC---CCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcCCccchhhhh
Q 013578 322 TLRVWNINVRYHLDE---DPKTLK-VLPIPLLDS---NGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVETGKVLDTAE 393 (440)
Q Consensus 322 ~i~iwd~~~~~~~~~---~~~~~~-~~~~~~~~~---~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~~~~~~~~~~ 393 (440)
.|++||+.++..... .+.... ......... ...-..-..++++++|.++++. .++.|++||..++.......
T Consensus 763 ~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG 842 (1057)
T PLN02919 763 SIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG 842 (1057)
T ss_pred eEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec
Confidence 999999986432100 000000 000000000 0001123478999999866664 48899999998876543221
Q ss_pred ------------ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 394 ------------KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 394 ------------~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
.++-.....|++++++ +++++-+.++.|++|++.+++
T Consensus 843 ~G~~G~~dG~~~~a~l~~P~GIavd~dG--------~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 843 TGKAGFKDGKALKAQLSEPAGLALGENG--------RLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred cCCcCCCCCcccccccCCceEEEEeCCC--------CEEEEECCCCEEEEEECCCCc
Confidence 1122357889999998 888888899999999998764
No 267
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=5.1e-09 Score=91.09 Aligned_cols=255 Identities=16% Similarity=0.198 Sum_probs=152.2
Q ss_pred eEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEe----ecCCcceEEeecc
Q 013578 95 TGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVAT----HNLSGCSLYMYGE 170 (440)
Q Consensus 95 ~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~----~~~~~~~~~~~~~ 170 (440)
++..|++|..+.|-- ..+.+.+|+......... .-+...+..+.++|.+..-.++. ..+....+++|..
T Consensus 129 W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~------kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~ 201 (566)
T KOG2315|consen 129 WVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQH------KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKY 201 (566)
T ss_pred cccccccchhhhhhh-hcceEEEEecCCccceee------eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecc
Confidence 689999987644322 234699999887433211 12347789999998844322222 2334455666654
Q ss_pred cccc--ccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEee--C---------CceEEEEeCC
Q 013578 171 EKAI--STNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCS--E---------GTDISIWHGK 237 (440)
Q Consensus 171 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~---------d~~i~vwd~~ 237 (440)
.... .....+.........+.|+ +-|..+|+.++ - ..++++++++
T Consensus 202 ~~~~~~~~~a~ksFFkadkvqm~WN----------------------~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~ 259 (566)
T KOG2315|consen 202 PEEGQHQPVANKSFFKADKVQMKWN----------------------KLGTALLVLASTDVDKTNASYYGEQTLYLLATQ 259 (566)
T ss_pred ccccccchhhhccccccceeEEEec----------------------cCCceEEEEEEEeecCCCccccccceEEEEEec
Confidence 4211 1111111111111223333 22332333322 1 2357788777
Q ss_pred CCceeeeeeCCCCcccEEEecCCCCeEEEE--ecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEE
Q 013578 238 TGKLLGNVDTNQLKNNMAAISPNGRFLAAA--AFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315 (440)
Q Consensus 238 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 315 (440)
...+.-.+ ...++|.++.|+++++.|++. -.=.++.|||++.. .+..+ ..++=+++-|+|.|++|+
T Consensus 260 g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~---------~v~df--~egpRN~~~fnp~g~ii~ 327 (566)
T KOG2315|consen 260 GESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK---------PVFDF--PEGPRNTAFFNPHGNIIL 327 (566)
T ss_pred CceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC---------EeEeC--CCCCccceEECCCCCEEE
Confidence 33333333 237899999999999887765 34567999998533 34444 467778999999999998
Q ss_pred EEeC---CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-------CCEEEEEEcCC
Q 013578 316 TASK---DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-------GSTLQWLSVET 385 (440)
Q Consensus 316 s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-------~~~i~i~d~~~ 385 (440)
.++- -|.|-+||+.+.+++..... ..-+-+.|+|||++++++. |+.++||+..
T Consensus 328 lAGFGNL~G~mEvwDv~n~K~i~~~~a----------------~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt- 390 (566)
T KOG2315|consen 328 LAGFGNLPGDMEVWDVPNRKLIAKFKA----------------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT- 390 (566)
T ss_pred EeecCCCCCceEEEeccchhhcccccc----------------CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-
Confidence 8774 57899999997655432111 1123589999999998752 7899999975
Q ss_pred ccchhhhhccccCCeEEEEecCCC
Q 013578 386 GKVLDTAEKAHEGEITCMAWAPKT 409 (440)
Q Consensus 386 ~~~~~~~~~~h~~~v~~v~~~~~~ 409 (440)
|..+.... -......+.|-|-.
T Consensus 391 G~~l~~~~--f~sEL~qv~W~P~~ 412 (566)
T KOG2315|consen 391 GSLLHEKM--FKSELLQVEWRPFN 412 (566)
T ss_pred Cceeehhh--hhHhHhheeeeecC
Confidence 44443321 11157778887653
No 268
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.22 E-value=5.4e-08 Score=95.34 Aligned_cols=312 Identities=16% Similarity=0.166 Sum_probs=171.4
Q ss_pred cCcceeEEEEccCCCEEEEeeCCCcEEEE----ecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceE
Q 013578 90 HGDSVTGLCFSSDGKCLATACADGVIRVH----KLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSL 165 (440)
Q Consensus 90 H~~~V~~l~~s~dg~~l~t~s~dg~v~vW----~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~ 165 (440)
..+.|.++.+-+|...++.+..+|.|.+. +......+ ....-+.+|.+++||||+..++.++.++. .+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E------~VG~vd~GI~a~~WSPD~Ella~vT~~~~--l~ 145 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE------IVGSVDSGILAASWSPDEELLALVTGEGN--LL 145 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE------EEEEEcCcEEEEEECCCcCEEEEEeCCCE--EE
Confidence 45789999999999999999999999999 44433322 22223478999999999999999987632 22
Q ss_pred Eeeccccccc----------------cccccccCCCCCCceee-----cccccc--cceeEEEeecccccccCCCCCeEE
Q 013578 166 YMYGEEKAIS----------------TNEGKQQSKLPGPEIKW-----EHHKVH--DKRAILTLFGASATYGTADGSTII 222 (440)
Q Consensus 166 ~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l 222 (440)
.+-..-..+. ..-++....+.+..-.- ...... ....+........+.+-.||. ++
T Consensus 146 ~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~-yF 224 (928)
T PF04762_consen 146 LMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGE-YF 224 (928)
T ss_pred EEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCc-EE
Confidence 2211111110 00011111111100000 000000 000001112334455678888 55
Q ss_pred EEeeC------CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec---CCCEEEEEeEecCCCceeeeeeee
Q 013578 223 ASCSE------GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF---TADVKVWEIVYSKDGLVKAVTSVM 293 (440)
Q Consensus 223 ~s~~~------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~ 293 (440)
++.+. -..++||+-+ |+....-+.-.+--.+++|.|.|+++|+... ...|.+|.-+..+ ......
T Consensus 225 AVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr-----hgeF~l 298 (928)
T PF04762_consen 225 AVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLR-----HGEFTL 298 (928)
T ss_pred EEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcE-----eeeEec
Confidence 54442 2579999965 6654444433444567899999999998865 3345556532211 111222
Q ss_pred eeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-----
Q 013578 294 QLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK----- 368 (440)
Q Consensus 294 ~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~----- 368 (440)
.+......|..+.|++|+..||..-.|. |.+|-..+...-- +..... .....+..+.|+|...
T Consensus 299 ~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYL---------Kqei~~--~~~~~~~~~~Wdpe~p~~L~v 366 (928)
T PF04762_consen 299 RFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYL---------KQEIRF--SSSESVNFVKWDPEKPLRLHV 366 (928)
T ss_pred CCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEE---------EEEEEc--cCCCCCCceEECCCCCCEEEE
Confidence 2234566799999999999999887664 9999887543210 000000 0000111245555322
Q ss_pred ----------------------------EEEEecCCEEEEEEcCCccchh---hhhccccCCeEEEEecCCCCCCCCCcc
Q 013578 369 ----------------------------ILAATHGSTLQWLSVETGKVLD---TAEKAHEGEITCMAWAPKTIPMGNQQV 417 (440)
Q Consensus 369 ----------------------------~l~~~~~~~i~i~d~~~~~~~~---~~~~~h~~~v~~v~~~~~~~~~~~~~~ 417 (440)
.+++-++..+.+-.++..-... ...-.-..+|.+++|++++
T Consensus 367 ~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~-------- 438 (928)
T PF04762_consen 367 LTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSN-------- 438 (928)
T ss_pred EecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCC--------
Confidence 2222223333333333222111 0111235689999999997
Q ss_pred eEEEEeeCCCeEEEEeCCC
Q 013578 418 SVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 418 ~~l~t~~~Dg~i~vw~~~~ 436 (440)
..+++-..||.|.+|....
T Consensus 439 ~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 439 SRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred CeEEEEECCCCEEEEEecC
Confidence 5688889999999998654
No 269
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.22 E-value=4.6e-10 Score=93.45 Aligned_cols=102 Identities=22% Similarity=0.296 Sum_probs=78.2
Q ss_pred eeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee-eeccccceE
Q 013578 225 CSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ-LKGHKSAVT 303 (440)
Q Consensus 225 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~h~~~v~ 303 (440)
.++...+.+|....+.+ ..+-+|-..+..++++||+++++++..|.+|++-...... .+.. .-||+..|.
T Consensus 128 agD~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f--------~IesfclGH~eFVS 198 (390)
T KOG3914|consen 128 AGDVYSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF--------VIESFCLGHKEFVS 198 (390)
T ss_pred cCCceeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc--------chhhhccccHhhee
Confidence 34455566777665433 3445788889999999999999999999999997764332 2222 347999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCccccccC
Q 013578 304 WLCFAPNSEQIITASKDGTLRVWNINVRYHLDE 336 (440)
Q Consensus 304 ~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~ 336 (440)
.++.-++ ..|+++|.|+++++||+++++++..
T Consensus 199 ~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t 230 (390)
T KOG3914|consen 199 TISLTDN-YLLLSGSGDKTLRLWDITSGKLLDT 230 (390)
T ss_pred eeeeccC-ceeeecCCCCcEEEEecccCCcccc
Confidence 9999865 4589999999999999999988743
No 270
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.21 E-value=2.9e-10 Score=89.04 Aligned_cols=93 Identities=22% Similarity=0.259 Sum_probs=70.7
Q ss_pred EEEEeCCCCceeeeeeCCCCcccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC
Q 013578 231 ISIWHGKTGKLLGNVDTNQLKNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP 309 (440)
Q Consensus 231 i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p 309 (440)
.+.|+++..+.+..-......+++++-+|. .+.+++|+.||.+.+||.+... .+...++.|+.+|+.+-|+|
T Consensus 161 ~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-------~p~S~l~ahk~~i~eV~FHp 233 (319)
T KOG4714|consen 161 FYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-------MPVSLLKAHKAEIWEVHFHP 233 (319)
T ss_pred eeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEccccc-------chHHHHHHhhhhhhheeccC
Confidence 566766544332222222334888888884 5677888999999999998764 25667889999999999999
Q ss_pred -CCCEEEEEeCCCcEEEEecCc
Q 013578 310 -NSEQIITASKDGTLRVWNINV 330 (440)
Q Consensus 310 -~~~~l~s~~~dg~i~iwd~~~ 330 (440)
++..|+++++||.+..||..+
T Consensus 234 k~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 234 KNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CCchheeEecCCCcEEEEcCCC
Confidence 667899999999999999874
No 271
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.21 E-value=3.6e-10 Score=101.27 Aligned_cols=294 Identities=18% Similarity=0.265 Sum_probs=179.5
Q ss_pred CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCC--eEEEEeecCCcceEEee
Q 013578 91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNAT--SIVVATHNLSGCSLYMY 168 (440)
Q Consensus 91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~--~l~~~~~~~~~~~~~~~ 168 (440)
.+.+.++..+|.|+-+|.++.-|. .+-|++..-..... +.... .-.|-.+.|++... +-++....
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~-l~h~t--pw~vad~qws~h~a~~~wiVsts~--------- 90 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRW-LHHIT--PWQVADVQWSPHPAKPYWIVSTSN--------- 90 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCcee-eeccC--cchhcceecccCCCCceeEEecCc---------
Confidence 567889999999999999998884 45577654333221 11111 13466677776543 11111111
Q ss_pred ccccccccccccccCCCCCCceeecccccccceeEEEeec----ccccccCCCCCeEEEEeeCCceEEEEeCCCCc-eee
Q 013578 169 GEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFG----ASATYGTADGSTIIASCSEGTDISIWHGKTGK-LLG 243 (440)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~ 243 (440)
...+.|+........+-....+ ...+-+.+.....+++|+-|..+..||+++.. ++.
T Consensus 91 ------------------qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~y 152 (1081)
T KOG0309|consen 91 ------------------QKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFY 152 (1081)
T ss_pred ------------------chhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCccee
Confidence 1112233322222222221111 12223345555589999999999999998754 455
Q ss_pred eeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC-CCCEEEEEeCCCc
Q 013578 244 NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP-NSEQIITASKDGT 322 (440)
Q Consensus 244 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~dg~ 322 (440)
....-......++|+-....+.+.+....|.+||++.+.. ++..+++|...|.+++|.. ....+.+++.|++
T Consensus 153 s~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~-------pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t 225 (1081)
T KOG0309|consen 153 STSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGST-------PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT 225 (1081)
T ss_pred eeecccccCceeeecccCcchhhhccCCceEEEeccCCCc-------ceEEecccceeeehHHHhhhhhhhhcccCCCCc
Confidence 5555556678899998655555666778899999998773 7788889999999999965 2345789999999
Q ss_pred EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC--EEEEe-cCCEEEE---------EEcCCc-cch
Q 013578 323 LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK--ILAAT-HGSTLQW---------LSVETG-KVL 389 (440)
Q Consensus 323 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~-~~~~i~i---------~d~~~~-~~~ 389 (440)
|+.||......... +.. .....+..-.+-|-|. ++.-. ++..+.+ |+..++ +.+
T Consensus 226 vkfw~y~kSt~e~~-----~~v--------tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pV 292 (1081)
T KOG0309|consen 226 VKFWDYSKSTTESK-----RTV--------TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPV 292 (1081)
T ss_pred eeeecccccccccc-----eec--------cccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcce
Confidence 99999875322110 000 1112244455555444 22211 1223333 333333 456
Q ss_pred hhhhccccCCeEEEEecCCCCCCC--CCcceEEEEeeCCCeEEEEeCCC
Q 013578 390 DTAEKAHEGEITCMAWAPKTIPMG--NQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 390 ~~~~~~h~~~v~~v~~~~~~~~~~--~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
+.+ .||++.|....|-..+-..+ ..++-+|+|-+.|..+|+|.+.+
T Consensus 293 h~F-~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 293 HTF-VGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred eee-cCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 677 69999998888865432111 12336899999999999998864
No 272
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.20 E-value=1.4e-09 Score=101.15 Aligned_cols=141 Identities=24% Similarity=0.285 Sum_probs=111.0
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~ 300 (440)
++++|+--+.|.+|+......-..+.+|.+.+..+.++-||.++++.++|..+++|++.+.+. .....-+|..
T Consensus 147 ~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~-------~~~~~fgHsa 219 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV-------LGCTGFGHSA 219 (967)
T ss_pred EEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccc-------cCcccccccc
Confidence 788899899999999873333335789999999999999999999999999999999987662 2235668999
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEE
Q 013578 301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQ 379 (440)
Q Consensus 301 ~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~ 379 (440)
.|+.+.|+|+ .++|++.|-+.++|+.+..... .+ . ......+..++..++..+++++ .|+.++
T Consensus 220 Rvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~--------~y-----~-~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk 283 (967)
T KOG0974|consen 220 RVWACCFLPN--RIITVGEDCTCRVWGVNGTQLE--------VY-----D-EHSGKGIWKIAVPIGVIIKVTGGNDSTLK 283 (967)
T ss_pred eeEEEEeccc--eeEEeccceEEEEEecccceeh--------hh-----h-hhhhcceeEEEEcCCceEEEeeccCcchh
Confidence 9999999998 8999999999999976533211 11 0 1112347788998888877774 589999
Q ss_pred EEEcC
Q 013578 380 WLSVE 384 (440)
Q Consensus 380 i~d~~ 384 (440)
+|+..
T Consensus 284 ~~~l~ 288 (967)
T KOG0974|consen 284 LWDLN 288 (967)
T ss_pred hhhhh
Confidence 99874
No 273
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.19 E-value=2e-07 Score=91.54 Aligned_cols=305 Identities=16% Similarity=0.221 Sum_probs=173.7
Q ss_pred CcceeEEEEccCCCEEEEeeCCCcEEEEecCC-------------CCC---------cceee------------EEec--
Q 013578 91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDD-------------ASS---------KSFKF------------LRIN-- 134 (440)
Q Consensus 91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~-------------~~~---------~~~~~------------~~~~-- 134 (440)
...|.|++||||+..|+....++++.+-.-+- +.. +..++ ....
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 56899999999999999999898887754311 000 00000 0000
Q ss_pred ------CCCCCCCceEEEccCCCeEEEEeec--CC-cceEEeeccccccccccccccCCCCCCceeecccccccceeEEE
Q 013578 135 ------LPPGGPPTAVAFADNATSIVVATHN--LS-GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILT 205 (440)
Q Consensus 135 ------~~~~~~v~~v~~~~~~~~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (440)
......-..++|-.||.++++.+.+ .. ...+++|+.+........... .+ ...
T Consensus 200 ~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~-gL-e~~---------------- 261 (928)
T PF04762_consen 200 KVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVD-GL-EGA---------------- 261 (928)
T ss_pred ccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCC-Cc-cCC----------------
Confidence 0023355678999999999999873 22 578899988754333222111 11 112
Q ss_pred eecccccccCCCCCeEEEEeeC---CceEEEEeCCCCceeeeee----CCCCcccEEEecCCCCeEEEEecCCCEEEEEe
Q 013578 206 LFGASATYGTADGSTIIASCSE---GTDISIWHGKTGKLLGNVD----TNQLKNNMAAISPNGRFLAAAAFTADVKVWEI 278 (440)
Q Consensus 206 ~~~~~~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 278 (440)
..+.|.|. ++++... ...|.+|. ++|..-..+. .....+..+.|++|+..||+...|. |++|-.
T Consensus 262 ------l~WrPsG~-lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~ 332 (928)
T PF04762_consen 262 ------LSWRPSGN-LIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTR 332 (928)
T ss_pred ------ccCCCCCC-EEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEe
Confidence 23367787 6665543 34466676 3454433332 3456789999999999999987655 999987
Q ss_pred EecCCCceeeeeeeeeeec-cccceEEEEEcCCC-CEEEEEeCCCcEEEEecCccccccC-------------C------
Q 013578 279 VYSKDGLVKAVTSVMQLKG-HKSAVTWLCFAPNS-EQIITASKDGTLRVWNINVRYHLDE-------------D------ 337 (440)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~-~~l~s~~~dg~i~iwd~~~~~~~~~-------------~------ 337 (440)
..-. +...+.+.- ....+..+.|+|.. ..|...+.+|.+..+++.-...... +
T Consensus 333 ~NYH------WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lll 406 (928)
T PF04762_consen 333 SNYH------WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLL 406 (928)
T ss_pred eCCE------EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEE
Confidence 4322 212222221 22345569999954 4566777667776654431111000 0
Q ss_pred -CCccccccccccCC-CCCeeeeeeEEeCCCCCEEEE-ecCCEEEEEEcCCccc--------hhhhh---------cccc
Q 013578 338 -PKTLKVLPIPLLDS-NGATLQYDRLSLSSDGKILAA-THGSTLQWLSVETGKV--------LDTAE---------KAHE 397 (440)
Q Consensus 338 -~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~-~~~~~i~i~d~~~~~~--------~~~~~---------~~h~ 397 (440)
+-....++.|+... -.-...|..++|++++..+++ ..+|.|.+|....... ...+. ....
T Consensus 407 Tpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (928)
T PF04762_consen 407 TPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPL 486 (928)
T ss_pred ecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhccccccccccccccc
Confidence 00111111111110 112345889999999875554 6799999988543321 11111 0123
Q ss_pred CCeEEEEecCCCCCCCCCcceEEEEeeCC---CeEEEEeCCC
Q 013578 398 GEITCMAWAPKTIPMGNQQVSVLATSSVD---KKVKLWLAPS 436 (440)
Q Consensus 398 ~~v~~v~~~~~~~~~~~~~~~~l~t~~~D---g~i~vw~~~~ 436 (440)
..+..++|..+. .+++....+ ..+.++++..
T Consensus 487 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~i~~~~~~~ 520 (928)
T PF04762_consen 487 GSLRQLAWLNDD--------TLLVLSDSDSNQSKIVLVDIDD 520 (928)
T ss_pred ccEEEEEEeCCC--------EEEEEEecCcccceEEEEEecc
Confidence 457888888775 555555544 6777777743
No 274
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.2e-09 Score=92.42 Aligned_cols=263 Identities=13% Similarity=0.151 Sum_probs=164.5
Q ss_pred cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeec
Q 013578 90 HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYG 169 (440)
Q Consensus 90 H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~ 169 (440)
|.+.|+.+.-+ -.+++.+++.||.++.|.-..-.. ......+..|-..+.+++.+-++
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isG--vEfVKhFraHL~~I~sl~~S~dg------------------- 65 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISG--VEFVKHFRAHLGVILSLAVSYDG------------------- 65 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccc--eeehhhhHHHHHHHHhhhccccc-------------------
Confidence 88888887765 457999999999999997543211 12233333344444444443332
Q ss_pred cccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeC-CceEEEEeCCCCceeeeeeCC
Q 013578 170 EEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSE-GTDISIWHGKTGKLLGNVDTN 248 (440)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~ 248 (440)
. ++.+.+. |..++++|+.+-..+..++..
T Consensus 66 -------------------------------------------------~-L~~Sv~d~Dhs~KvfDvEn~DminmiKL~ 95 (558)
T KOG0882|consen 66 -------------------------------------------------W-LFRSVEDPDHSVKVFDVENFDMINMIKLV 95 (558)
T ss_pred -------------------------------------------------e-eEeeccCcccceeEEEeeccchhhhcccc
Confidence 2 5666555 888999998877665544433
Q ss_pred CCcccEEEecCCC---CeEEE-EecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEE
Q 013578 249 QLKNNMAAISPNG---RFLAA-AAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLR 324 (440)
Q Consensus 249 ~~~v~~~~~s~~~---~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~ 324 (440)
.-+-.+-.+...| ..+++ .-.+|.|.++|-.... .+....-.-|..+|.++.+.|-+..+++....|.|.
T Consensus 96 ~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~------~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVE 169 (558)
T KOG0882|consen 96 DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDF------CQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVE 169 (558)
T ss_pred cCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCc------CccceecccccCceEEEEeeccccceeeccccceeE
Confidence 3222222233333 13333 3467899999965432 112333445999999999999999999999999999
Q ss_pred EEecCccccc-cCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-ecCCEEEEEEcCCccchhhhhc--------
Q 013578 325 VWNINVRYHL-DEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-THGSTLQWLSVETGKVLDTAEK-------- 394 (440)
Q Consensus 325 iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~i~i~d~~~~~~~~~~~~-------- 394 (440)
-|......+. .............++..........++.|+|+|..++. +.|..|++++..+|+.++.+..
T Consensus 170 yWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q 249 (558)
T KOG0882|consen 170 YWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQ 249 (558)
T ss_pred eecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhc
Confidence 9998741110 00000000111122333334445678999999999987 5589999999999987765530
Q ss_pred -----------------------cccC-CeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 395 -----------------------AHEG-EITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 395 -----------------------~h~~-~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
.|.. .-+.+.|...+ ++|+-|+-=| |+|.++.+.++
T Consensus 250 ~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~--------~flly~t~~g-ikvin~~tn~v 309 (558)
T KOG0882|consen 250 PKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESG--------NFLLYGTILG-IKVINLDTNTV 309 (558)
T ss_pred cccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCC--------CEEEeeccee-EEEEEeecCeE
Confidence 1111 23455676666 7888887665 88888877653
No 275
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=4.7e-10 Score=100.26 Aligned_cols=244 Identities=14% Similarity=0.144 Sum_probs=153.1
Q ss_pred cceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCccee----------eEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578 92 DSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFK----------FLRINLPPGGPPTAVAFADNATSIVVATHNLS 161 (440)
Q Consensus 92 ~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~----------~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~ 161 (440)
....|++|+....|+|.|+.||.++|-.+.+....... .-+...+|...|..+.|+.+.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~----------- 83 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN----------- 83 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-----------
Confidence 46789999999999999999999999998765432110 011222333334333333222
Q ss_pred cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578 162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL 241 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 241 (440)
..|.+...+|.|.+|-+-.+.-
T Consensus 84 ----------------------------------------------------------QKLTtSDt~GlIiVWmlykgsW 105 (1189)
T KOG2041|consen 84 ----------------------------------------------------------QKLTTSDTSGLIIVWMLYKGSW 105 (1189)
T ss_pred ----------------------------------------------------------ccccccCCCceEEEEeeecccH
Confidence 1577778889999998887754
Q ss_pred eeee--eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC
Q 013578 242 LGNV--DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK 319 (440)
Q Consensus 242 ~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~ 319 (440)
...+ ....+.|.+++|+.+|..++....||.|.+=.+.... - --..+++ .....+.|++|.+.++.+-.
T Consensus 106 ~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-----I--wgKeLkg--~~l~hv~ws~D~~~~Lf~~a 176 (1189)
T KOG2041|consen 106 CEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-----I--WGKELKG--QLLAHVLWSEDLEQALFKKA 176 (1189)
T ss_pred HHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-----e--cchhcch--heccceeecccHHHHHhhhc
Confidence 4333 2235668899999999999999999999876654322 0 0112222 12347889999998888888
Q ss_pred CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe--------CCCCCEEEEec-CCEEEEEEcCCccchh
Q 013578 320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL--------SSDGKILAATH-GSTLQWLSVETGKVLD 390 (440)
Q Consensus 320 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------s~~g~~l~~~~-~~~i~i~d~~~~~~~~ 390 (440)
+|.+.+||.+......-...+.-.... .....+ ..+..+.| -||...|+++. +|.+.+-.-.......
T Consensus 177 nge~hlydnqgnF~~Kl~~~c~Vn~tg-~~s~~~--~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pv 253 (1189)
T KOG2041|consen 177 NGETHLYDNQGNFERKLEKDCEVNGTG-IFSNFP--TKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPV 253 (1189)
T ss_pred CCcEEEecccccHHHhhhhceEEeeee-eecCCC--ccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCe
Confidence 999999998755432211111100000 001001 11223333 35777888876 6777776544444333
Q ss_pred hhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCC
Q 013578 391 TAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD 426 (440)
Q Consensus 391 ~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D 426 (440)
.+. -.-.|..+.|+++| ..|+.+|.|
T Consensus 254 v~d--tgm~~vgakWnh~G--------~vLAvcG~~ 279 (1189)
T KOG2041|consen 254 VVD--TGMKIVGAKWNHNG--------AVLAVCGND 279 (1189)
T ss_pred EEe--cccEeecceecCCC--------cEEEEccCc
Confidence 332 23568899999999 899998875
No 276
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.17 E-value=1.9e-07 Score=75.04 Aligned_cols=144 Identities=13% Similarity=0.173 Sum_probs=77.4
Q ss_pred eEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec-cccceEEEEEcCCCCEEEEEeCCCc-EEEEecCccccccCCCCc
Q 013578 263 FLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG-HKSAVTWLCFAPNSEQIITASKDGT-LRVWNINVRYHLDEDPKT 340 (440)
Q Consensus 263 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~ 340 (440)
.|++-..+|.++-|-+..+......+. ....+.. +...|.++.++|..++|+.|+.... -..+...
T Consensus 111 ELlvi~Y~G~L~Sy~vs~gt~q~y~e~-hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~----------- 178 (282)
T PF15492_consen 111 ELLVINYRGQLRSYLVSVGTNQGYQEN-HSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKAS----------- 178 (282)
T ss_pred eEEEEeccceeeeEEEEcccCCcceee-EEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccccc-----------
Confidence 566777888888888754332111111 2223333 3668999999999888777664221 0000000
Q ss_pred cccccccccCCCCCeeeeeeEEeCCCCCEEEEecCC------EEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCC
Q 013578 341 LKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS------TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGN 414 (440)
Q Consensus 341 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~------~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~ 414 (440)
........-+.-+|..+.+....++ +..++.+-+.+..... ......|..|..+||+
T Consensus 179 -----------~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~-~~~~d~i~kmSlSPdg----- 241 (282)
T PF15492_consen 179 -----------SCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQ-GQEQDGIFKMSLSPDG----- 241 (282)
T ss_pred -----------ccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecc-ccCCCceEEEEECCCC-----
Confidence 0000001111112222222221111 1233333332222111 2345689999999999
Q ss_pred CcceEEEEeeCCCeEEEEeCCCCC
Q 013578 415 QQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 415 ~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
..||+...+|.|.+|++++.+
T Consensus 242 ---~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 242 ---SLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred ---CEEEEEEcCCeEEEEecCcch
Confidence 899999999999999999764
No 277
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.14 E-value=5.8e-10 Score=109.29 Aligned_cols=174 Identities=11% Similarity=0.182 Sum_probs=138.6
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeC-CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccc
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDT-NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK 299 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~ 299 (440)
+.++|+.||.|++|....++.+..++. ....++.+.|+.+|+.+.++..||.+.+|.... ......+.|.
T Consensus 2222 ~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p---------k~~~s~qchn 2292 (2439)
T KOG1064|consen 2222 YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP---------KPYTSWQCHN 2292 (2439)
T ss_pred eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC---------cceeccccCC
Confidence 889999999999999988887766642 347888999999999999999999999999752 2566778898
Q ss_pred cceEEEEEcCCCCEEEEEe---CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-C
Q 013578 300 SAVTWLCFAPNSEQIITAS---KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-G 375 (440)
Q Consensus 300 ~~v~~~~~~p~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~ 375 (440)
.....+.|-. ..+++++ .++.+.+||...... .. .....|...++++++.|..++|.+|+ +
T Consensus 2293 k~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~-------~s------~v~~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2293 KALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPM-------NS------LVHTCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred ccccceeeee--hhhhccccCCCCCcccchhcccCcc-------cc------eeeeecCCCceEEEEcCcceEEEecCCc
Confidence 8888888854 5667665 477899999763211 11 11146667789999999999999877 8
Q ss_pred CEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 376 STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 376 ~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
|.|++||++..++++.++. ++.. .++++|+..|.++||++...
T Consensus 2358 G~v~l~D~rqrql~h~~~~----------~~~~---------~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA----------LDTR---------EYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred CcEEEeehHHHHHHHHhhh----------hhhh---------heeeccCcccceEEEEcccc
Confidence 9999999999888888752 4422 69999999999999999753
No 278
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.13 E-value=3e-07 Score=76.32 Aligned_cols=172 Identities=15% Similarity=0.207 Sum_probs=108.8
Q ss_pred CCceEEEEeCC-CCceeeeeeCCCCcccEEEecCCCCeEEEEec-------CC-----------CEEEEEeEecCCCcee
Q 013578 227 EGTDISIWHGK-TGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF-------TA-----------DVKVWEIVYSKDGLVK 287 (440)
Q Consensus 227 ~d~~i~vwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------dg-----------~i~i~d~~~~~~~~~~ 287 (440)
..|.|-|||.. +.+.+.++..+......+.+.|||+.|+++.. .| .+...|..++.
T Consensus 75 g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~----- 149 (305)
T PF07433_consen 75 GRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGA----- 149 (305)
T ss_pred CcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCc-----
Confidence 35779999998 66778888888877888999999988888731 12 23333333332
Q ss_pred eeeeeeee--eccccceEEEEEcCCCCEEEEEeCCCc-------EEEEecCccccccCCCCccccccccccCCCCCeeee
Q 013578 288 AVTSVMQL--KGHKSAVTWLCFAPNSEQIITASKDGT-------LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQY 358 (440)
Q Consensus 288 ~~~~~~~~--~~h~~~v~~~~~~p~~~~l~s~~~dg~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 358 (440)
......+ .-|+..|..+++.++|..++..-..|. |-+++.... ...+..+......-...+
T Consensus 150 -ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~---------~~~~~~p~~~~~~l~~Y~ 219 (305)
T PF07433_consen 150 -LLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA---------LRLLPAPEEQWRRLNGYI 219 (305)
T ss_pred -eeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc---------ceeccCChHHHHhhCCce
Confidence 0112224 347788999999999876554433322 333333211 111111111111222347
Q ss_pred eeEEeCCCCCEEEEec--CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeC
Q 013578 359 DRLSLSSDGKILAATH--GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSV 425 (440)
Q Consensus 359 ~~~~~s~~g~~l~~~~--~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~ 425 (440)
-+++++.++.++++++ .+.+.+||..+++.+... .-..+..++-.+++ +++|.+.
T Consensus 220 gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~---~l~D~cGva~~~~~---------f~~ssG~ 276 (305)
T PF07433_consen 220 GSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV---PLPDACGVAPTDDG---------FLVSSGQ 276 (305)
T ss_pred EEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc---ccCceeeeeecCCc---------eEEeCCC
Confidence 7899999999998876 789999999999998765 23456777777774 6666654
No 279
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.12 E-value=1.5e-09 Score=88.54 Aligned_cols=205 Identities=14% Similarity=0.151 Sum_probs=147.3
Q ss_pred EEEEeeCCceEEEEeCC-CCceeeeee-CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc
Q 013578 221 IIASCSEGTDISIWHGK-TGKLLGNVD-TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH 298 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~-~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h 298 (440)
-+++.+.|.++++|--+ .++.-..+. ....+++++.+.++...|++|-.+|++.-+.+...- ...........|
T Consensus 38 gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf----nkm~~~r~~~~h 113 (404)
T KOG1409|consen 38 GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF----NKMTFLKDYLAH 113 (404)
T ss_pred CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhh----hhcchhhhhhhh
Confidence 58899999999999543 343322222 235678899999999999999999999988764332 112244556679
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccC---------------------CCC------ccccccccccCC
Q 013578 299 KSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDE---------------------DPK------TLKVLPIPLLDS 351 (440)
Q Consensus 299 ~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~---------------------~~~------~~~~~~~~~~~~ 351 (440)
...|..+-|+-...++++.+.|..+.---.+.+..+.. ... ........+...
T Consensus 114 ~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~ 193 (404)
T KOG1409|consen 114 QARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTF 193 (404)
T ss_pred hcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEE
Confidence 99999999998888999998887665322222211110 000 000011234455
Q ss_pred CCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEE
Q 013578 352 NGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVK 430 (440)
Q Consensus 352 ~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~ 430 (440)
.+|...+.+++|.+..+.|.+|. |..+.+||+.-.+-......+|.+.|..+...+-- +.|++++.||.|-
T Consensus 194 ~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t--------~~l~S~~edg~i~ 265 (404)
T KOG1409|consen 194 NGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHT--------RQLISCGEDGGIV 265 (404)
T ss_pred cCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhh--------eeeeeccCCCeEE
Confidence 67888899999999999888875 89999999977665554447899999999888876 8999999999999
Q ss_pred EEeCCCC
Q 013578 431 LWLAPSL 437 (440)
Q Consensus 431 vw~~~~~ 437 (440)
+|+++..
T Consensus 266 ~w~mn~~ 272 (404)
T KOG1409|consen 266 VWNMNVK 272 (404)
T ss_pred EEeccce
Confidence 9999764
No 280
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=5e-08 Score=87.64 Aligned_cols=130 Identities=15% Similarity=0.171 Sum_probs=73.6
Q ss_pred ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec-CC--CEEEEEeEecCCCceeeeeeeeeeeccccceEEE
Q 013578 229 TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF-TA--DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWL 305 (440)
Q Consensus 229 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 305 (440)
..|.++|+.+++.. .+..+........|+|||+.|+..+. .+ .|+++|+..+. .. .....+. ...
T Consensus 257 ~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~---~~----rlt~~g~----~~~ 324 (419)
T PRK04043 257 PDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS---VE----QVVFHGK----NNS 324 (419)
T ss_pred cEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC---eE----eCccCCC----cCc
Confidence 45888888776543 34333333345689999998887764 34 45566654333 00 1111121 124
Q ss_pred EEcCCCCEEEEEeCC---------CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--
Q 013578 306 CFAPNSEQIITASKD---------GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-- 374 (440)
Q Consensus 306 ~~~p~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-- 374 (440)
.|+|+|++|+..+.. ..|.+.|+.++.. +.+. . .+ ......|+|||+.++...
T Consensus 325 ~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~--------~~LT----~-~~---~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 325 SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI--------RRLT----A-NG---VNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe--------EECC----C-CC---CcCCeEECCCCCEEEEEEcc
Confidence 899999988766543 2577777765421 1111 1 11 122488999999877643
Q ss_pred --CCEEEEEEcCCc
Q 013578 375 --GSTLQWLSVETG 386 (440)
Q Consensus 375 --~~~i~i~d~~~~ 386 (440)
...+.+.++...
T Consensus 389 ~~~~~L~~~~l~g~ 402 (419)
T PRK04043 389 GNQSALGIIRLNYN 402 (419)
T ss_pred CCcEEEEEEecCCC
Confidence 234666676543
No 281
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.12 E-value=2.3e-07 Score=79.53 Aligned_cols=250 Identities=16% Similarity=0.156 Sum_probs=153.2
Q ss_pred ccCcceeEEEEccCCCEEEEeeCCC-cEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEe
Q 013578 89 GHGDSVTGLCFSSDGKCLATACADG-VIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYM 167 (440)
Q Consensus 89 ~H~~~V~~l~~s~dg~~l~t~s~dg-~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~ 167 (440)
+|.+.|.-..+..+++-++.|..|| .+-|+|..+++.+ ...+.-+.|.++..+++|+++++
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k------r~e~~lg~I~av~vs~dGK~~vv------------ 418 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK------RIEKDLGNIEAVKVSPDGKKVVV------------ 418 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE------EeeCCccceEEEEEcCCCcEEEE------------
Confidence 6888899999998888999999998 8999999877532 22233367888888888775444
Q ss_pred eccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeC
Q 013578 168 YGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDT 247 (440)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 247 (440)
+.....|.+.|+.++.....-+.
T Consensus 419 ---------------------------------------------------------aNdr~el~vididngnv~~idkS 441 (668)
T COG4946 419 ---------------------------------------------------------ANDRFELWVIDIDNGNVRLIDKS 441 (668)
T ss_pred ---------------------------------------------------------EcCceEEEEEEecCCCeeEeccc
Confidence 44445577788888766544445
Q ss_pred CCCcccEEEecCCCCeEEEEecCC----CEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe-----
Q 013578 248 NQLKNNMAAISPNGRFLAAAAFTA----DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS----- 318 (440)
Q Consensus 248 ~~~~v~~~~~s~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~----- 318 (440)
..+-|+.+.|+|+++++|-+--+| .|++||+..++ +.......+-=.+-+|.|++++|.--+
T Consensus 442 ~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K---------iy~vTT~ta~DfsPaFD~d~ryLYfLs~RsLd 512 (668)
T COG4946 442 EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK---------IYDVTTPTAYDFSPAFDPDGRYLYFLSARSLD 512 (668)
T ss_pred ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe---------EEEecCCcccccCcccCCCCcEEEEEeccccC
Confidence 567789999999999999886665 58999987654 222332333335668889999876544
Q ss_pred --CCCcEEEEecCcccc---c----------cCCCCc---------cccccccccCCCCCeeeeeeEEeCCCCCEEEE--
Q 013578 319 --KDGTLRVWNINVRYH---L----------DEDPKT---------LKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-- 372 (440)
Q Consensus 319 --~dg~i~iwd~~~~~~---~----------~~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-- 372 (440)
.|..+.-+....-.. . .+.+.. ...+........-.+....+++--.+|+.+..
T Consensus 513 Ps~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee~dY~sI~~lk~~killfs~ 592 (668)
T COG4946 513 PSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEEGDYRSIAGLKNGKILLFSY 592 (668)
T ss_pred CCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhcccccccccCccceeEeeecCCCeEEEEEe
Confidence 243333222211000 0 000000 00000000000111111223343445543322
Q ss_pred -----------ec--CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 373 -----------TH--GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 373 -----------~~--~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
|. -|.+.+||+++.+... -...+.++..++|+ ..++. -.||.+++++++.
T Consensus 593 pi~Gefs~yy~gq~~kG~l~~ydletkk~~e-----~k~nvss~rlS~D~--------s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 593 PIHGEFSQYYWGQPEKGRLEKYDLETKKVEE-----YKDNVSSFRLSSDG--------SKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred eccchhhhhhcCCCccceEEEEecchhhHHH-----HhcccceEEEcCCC--------CEEEE-EeCCeEEEEeccc
Confidence 11 2677888887765432 23468999999998 56665 7899999999976
No 282
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.11 E-value=1.7e-10 Score=65.48 Aligned_cols=37 Identities=41% Similarity=0.729 Sum_probs=35.4
Q ss_pred ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEe
Q 013578 83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHK 119 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~ 119 (440)
+++++++|.+.|++|+|+|++++|++|+.|++|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 5778999999999999999999999999999999997
No 283
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.09 E-value=5.1e-09 Score=85.57 Aligned_cols=214 Identities=13% Similarity=0.161 Sum_probs=130.1
Q ss_pred CcceeEEEEccCCC--EEEEeeCCCcEEEEecCCCCCcc------------------ee-------------eEEecCCC
Q 013578 91 GDSVTGLCFSSDGK--CLATACADGVIRVHKLDDASSKS------------------FK-------------FLRINLPP 137 (440)
Q Consensus 91 ~~~V~~l~~s~dg~--~l~t~s~dg~v~vW~~~~~~~~~------------------~~-------------~~~~~~~~ 137 (440)
...|+.++|.++++ .++....|.+|++|.+....... .. .......|
T Consensus 84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH 163 (433)
T KOG1354|consen 84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH 163 (433)
T ss_pred hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence 35789999998764 56677789999999986533221 00 00112345
Q ss_pred CCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCC
Q 013578 138 GGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTAD 217 (440)
Q Consensus 138 ~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (440)
.-.|.++.++.|...++++.. ..+.+|..+............+. .... ........-|+|.
T Consensus 164 tyhiNSIS~NsD~Et~lSADd----LRINLWnlei~d~sFnIVDIKP~----------nmEe-----LteVITsaEFhp~ 224 (433)
T KOG1354|consen 164 TYHINSISVNSDKETFLSADD----LRINLWNLEIIDQSFNIVDIKPA----------NMEE-----LTEVITSAEFHPH 224 (433)
T ss_pred eeEeeeeeecCccceEeeccc----eeeeeccccccCCceeEEEcccc----------CHHH-----HHHHHhhhccCHh
Confidence 567889999999998887753 46777766544222111110000 0000 0000111223444
Q ss_pred CCeEEEEeeCCceEEEEeCCCCcee----eeeeC------------CCCcccEEEecCCCCeEEEEecCCCEEEEEeEec
Q 013578 218 GSTIIASCSEGTDISIWHGKTGKLL----GNVDT------------NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYS 281 (440)
Q Consensus 218 ~~~~l~s~~~d~~i~vwd~~~~~~~----~~~~~------------~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 281 (440)
.-.+++-.+..|+|++-|++....- ..+.. --..|..+.|+++|+++++-+. -+|++||+...
T Consensus 225 ~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme 303 (433)
T KOG1354|consen 225 HCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNME 303 (433)
T ss_pred HccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecccc
Confidence 4447777788899999999853221 11111 1234677999999999987643 57999999654
Q ss_pred CCCceeeeeeeeeeeccc------------cce---EEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q 013578 282 KDGLVKAVTSVMQLKGHK------------SAV---TWLCFAPNSEQIITASKDGTLRVWNINVR 331 (440)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~------------~~v---~~~~~~p~~~~l~s~~~dg~i~iwd~~~~ 331 (440)
.. ++....-|. +.| ..++|+-++.+++||+....++++++..+
T Consensus 304 ~~-------pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 304 AK-------PVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred CC-------cceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 31 333333332 223 35789888899999999999999996544
No 284
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=1.3e-08 Score=91.36 Aligned_cols=235 Identities=15% Similarity=0.192 Sum_probs=156.3
Q ss_pred cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC 163 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~ 163 (440)
-++|+||.+.|.-+.|+.+.+.|-|...+|.|.||-+-.++-- .-.......+-|.+++|..+|..+..+-.|
T Consensus 64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~---EEMiNnRnKSvV~SmsWn~dG~kIcIvYeD---- 136 (1189)
T KOG2041|consen 64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWC---EEMINNRNKSVVVSMSWNLDGTKICIVYED---- 136 (1189)
T ss_pred hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHH---HHHhhCcCccEEEEEEEcCCCcEEEEEEcc----
Confidence 3679999999999999999999999999999999998765421 111223344678999999999988877554
Q ss_pred eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee
Q 013578 164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG 243 (440)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 243 (440)
| -++.|+-|| =++|.-+ +.
T Consensus 137 ------------------------------------------------------G--avIVGsvdG-NRIwgKe----Lk 155 (1189)
T KOG2041|consen 137 ------------------------------------------------------G--AVIVGSVDG-NRIWGKE----LK 155 (1189)
T ss_pred ------------------------------------------------------C--CEEEEeecc-ceecchh----cc
Confidence 2 467788888 6788522 11
Q ss_pred eeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeee----eeeeeccccceEEEEEc--------CCC
Q 013578 244 NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTS----VMQLKGHKSAVTWLCFA--------PNS 311 (440)
Q Consensus 244 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~~~h~~~v~~~~~~--------p~~ 311 (440)
. .....+.|++|.+.++.+-.+|.+++||....-.... ...+ ...+......|..+.|. |+.
T Consensus 156 g-----~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl-~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr 229 (1189)
T KOG2041|consen 156 G-----QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKL-EKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR 229 (1189)
T ss_pred h-----heccceeecccHHHHHhhhcCCcEEEecccccHHHhh-hhceEEeeeeeecCCCccccceeeccCccccCCCCC
Confidence 1 1123678999999999999999999999643211000 0001 11111112235555553 477
Q ss_pred CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-C---------CEEEEE
Q 013578 312 EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-G---------STLQWL 381 (440)
Q Consensus 312 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~---------~~i~i~ 381 (440)
..|+.+-.+|.+.|-.-.+.. . |..... ...+....|+++|.+||+++ + +.|.+|
T Consensus 230 P~lavcy~nGr~QiMR~eND~-------~------Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fy 294 (1189)
T KOG2041|consen 230 PRLAVCYANGRMQIMRSENDP-------E------PVVVDT--GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFY 294 (1189)
T ss_pred CEEEEEEcCceehhhhhcCCC-------C------CeEEec--ccEeecceecCCCcEEEEccCcccccCccccceEEEe
Confidence 889999999998876543211 0 111111 14467899999999999853 1 355555
Q ss_pred EcCCccchhhhhccccCCeEEEEecCCC
Q 013578 382 SVETGKVLDTAEKAHEGEITCMAWAPKT 409 (440)
Q Consensus 382 d~~~~~~~~~~~~~h~~~v~~v~~~~~~ 409 (440)
. .-|+.+..+ +.....|++++|-..+
T Consensus 295 s-p~G~i~gtl-kvpg~~It~lsWEg~g 320 (1189)
T KOG2041|consen 295 S-PYGHIVGTL-KVPGSCITGLSWEGTG 320 (1189)
T ss_pred c-cchhheEEE-ecCCceeeeeEEcCCc
Confidence 4 446677777 4667789999998887
No 285
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.00 E-value=1.8e-06 Score=77.74 Aligned_cols=267 Identities=12% Similarity=0.129 Sum_probs=142.5
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCC-ceEEEccCCCeEEEEeecCCcceEEeecccccccccccc
Q 013578 102 DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPP-TAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGK 180 (440)
Q Consensus 102 dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v-~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (440)
.+..++.++.+|.|..+|..+++.. ...... ..+ .... .++..+++++.+ ..++.++....
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~----W~~~~~--~~~~~~p~--v~~~~v~v~~~~---g~l~ald~~tG------- 125 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRL----WRVDLD--ERLSGGVG--ADGGLVFVGTEK---GEVIALDAEDG------- 125 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEe----eeecCC--CCcccceE--EcCCEEEEEcCC---CEEEEEECCCC-------
Confidence 3668888888999999998877532 111111 111 1122 245566665544 24444443322
Q ss_pred ccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcc-----cEE
Q 013578 181 QQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKN-----NMA 255 (440)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v-----~~~ 255 (440)
...|....... . .. . .. . .+. .++.++.++.|..||.++|+.+..+....... ...
T Consensus 126 --------~~~W~~~~~~~---~---~~-~-p~-v-~~~-~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp 186 (377)
T TIGR03300 126 --------KELWRAKLSSE---V---LS-P-PL-V-ANG-LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASP 186 (377)
T ss_pred --------cEeeeeccCce---e---ec-C-CE-E-ECC-EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCC
Confidence 12333221110 0 00 0 00 1 123 56667788999999999999877665432211 111
Q ss_pred EecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee-eeccc--cceEEEEEcC--CCCEEEEEeCCCcEEEEecCc
Q 013578 256 AISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ-LKGHK--SAVTWLCFAP--NSEQIITASKDGTLRVWNINV 330 (440)
Q Consensus 256 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~h~--~~v~~~~~~p--~~~~l~s~~~dg~i~iwd~~~ 330 (440)
.. .+..++.+..+|.+..+|..+++. .+..... ..+.. ..+..+.-+| .+..++.++.+|.+..||.++
T Consensus 187 ~~--~~~~v~~~~~~g~v~ald~~tG~~----~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~t 260 (377)
T TIGR03300 187 VI--ADGGVLVGFAGGKLVALDLQTGQP----LWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRS 260 (377)
T ss_pred EE--ECCEEEEECCCCEEEEEEccCCCE----eeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCC
Confidence 11 134677888889999999876651 1110000 00000 0000111111 345788888899999999987
Q ss_pred cccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCC
Q 013578 331 RYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTI 410 (440)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~ 410 (440)
++.+..... .. ...... .++.+++...+|.++.+|..+|+.+................. +
T Consensus 261 G~~~W~~~~------------~~----~~~p~~-~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~--g- 320 (377)
T TIGR03300 261 GRVLWKRDA------------SS----YQGPAV-DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVV--G- 320 (377)
T ss_pred CcEEEeecc------------CC----ccCceE-eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEE--C-
Confidence 754322110 00 011111 134444455689999999999987765421111122222222 2
Q ss_pred CCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 411 PMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 411 ~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
..|++++.||.|.+++..+++
T Consensus 321 -------~~l~~~~~~G~l~~~d~~tG~ 341 (377)
T TIGR03300 321 -------GYLVVGDFEGYLHWLSREDGS 341 (377)
T ss_pred -------CEEEEEeCCCEEEEEECCCCC
Confidence 478889999999999998876
No 286
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.00 E-value=2.4e-07 Score=76.87 Aligned_cols=220 Identities=20% Similarity=0.283 Sum_probs=141.5
Q ss_pred CccccccccccCcceeEEEEccCCCEEEEeeC-----CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEE
Q 013578 80 HPLDVNTLKGHGDSVTGLCFSSDGKCLATACA-----DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIV 154 (440)
Q Consensus 80 ~~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~-----dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~ 154 (440)
++.+-+.|.||. .||+||++|+|.-. .|.|-|||.... ...+.....++-....+.+.||++.|+
T Consensus 45 ~a~~gRHFyGHg------~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~----~~ri~E~~s~GIGPHel~l~pDG~tLv 114 (305)
T PF07433_consen 45 WAPPGRHFYGHG------VFSPDGRLLYTTENDYETGRGVIGVYDAARG----YRRIGEFPSHGIGPHELLLMPDGETLV 114 (305)
T ss_pred cCCCCCEEecCE------EEcCCCCEEEEeccccCCCcEEEEEEECcCC----cEEEeEecCCCcChhhEEEcCCCCEEE
Confidence 344456788885 89999999998743 488999999832 234555566677788999999999988
Q ss_pred EEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCC-CCeEEEEeeCCceEEE
Q 013578 155 VATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTAD-GSTIIASCSEGTDISI 233 (440)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~v 233 (440)
++-... .. .|+ |+..|-..+++..+.+
T Consensus 115 VANGGI-----~T-----------------------------------------------hpd~GR~kLNl~tM~psL~~ 142 (305)
T PF07433_consen 115 VANGGI-----ET-----------------------------------------------HPDSGRAKLNLDTMQPSLVY 142 (305)
T ss_pred EEcCCC-----cc-----------------------------------------------CcccCceecChhhcCCceEE
Confidence 875330 00 122 3334555666777888
Q ss_pred EeCCCCceeeeee----CCCCcccEEEecCCCCeEEEEecCCC-------EEEEEeEecCCCceeeee-eeeeeeccccc
Q 013578 234 WHGKTGKLLGNVD----TNQLKNNMAAISPNGRFLAAAAFTAD-------VKVWEIVYSKDGLVKAVT-SVMQLKGHKSA 301 (440)
Q Consensus 234 wd~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~~~-~~~~~~~h~~~ 301 (440)
.|..+|+.+.+.. .|...+..++++++|..++..-..|. +-+++. +.. ..... .........+.
T Consensus 143 ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~--~~~~~~p~~~~~~l~~Y 218 (305)
T PF07433_consen 143 LDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGA--LRLLPAPEEQWRRLNGY 218 (305)
T ss_pred EecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCc--ceeccCChHHHHhhCCc
Confidence 8889998877643 36778999999999987776654443 222321 110 00000 01112234567
Q ss_pred eEEEEEcCCCCEEEEEe-CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEE
Q 013578 302 VTWLCFAPNSEQIITAS-KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQW 380 (440)
Q Consensus 302 v~~~~~~p~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i 380 (440)
|-+|++++++.+++..| .-+.+.+||..++..+.... ...+..++..+++ +++++..|.+..
T Consensus 219 ~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~----------------l~D~cGva~~~~~-f~~ssG~G~~~~ 281 (305)
T PF07433_consen 219 IGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP----------------LPDACGVAPTDDG-FLVSSGQGQLIR 281 (305)
T ss_pred eEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc----------------cCceeeeeecCCc-eEEeCCCccEEE
Confidence 89999999998876555 67789999999876542211 1224456666666 666655555444
Q ss_pred EE
Q 013578 381 LS 382 (440)
Q Consensus 381 ~d 382 (440)
..
T Consensus 282 ~~ 283 (305)
T PF07433_consen 282 LS 283 (305)
T ss_pred cc
Confidence 33
No 287
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=8.5e-08 Score=87.03 Aligned_cols=267 Identities=11% Similarity=0.101 Sum_probs=176.9
Q ss_pred cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeec
Q 013578 90 HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYG 169 (440)
Q Consensus 90 H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~ 169 (440)
|...-.++.|+|.| +||.|+.. .|.|-|..+.+ .++....|...|+.+.|.|-.......
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q-----~iqsie~h~s~V~~VrWap~~~p~~ll------------- 73 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQ-----LIQSIELHQSAVTSVRWAPAPSPRDLL------------- 73 (1062)
T ss_pred CcccccccccCccc-eEEEecCc-eEEEEehhhhh-----hhhccccCccceeEEEeccCCCchhcc-------------
Confidence 34446788999877 78888755 57777765543 445556677889999999864321111
Q ss_pred cccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCC-CCeEEEEeeCCceEEEEeCCCCceeeeeeCC
Q 013578 170 EEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTAD-GSTIIASCSEGTDISIWHGKTGKLLGNVDTN 248 (440)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 248 (440)
+|. ...+++++...|.|.+||...+..+..+..+
T Consensus 74 ---------------------------------------------S~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~ 108 (1062)
T KOG1912|consen 74 ---------------------------------------------SPSSSQLLIASADISGRIILVDFVLASVINWLSHS 108 (1062)
T ss_pred ---------------------------------------------CccccceeEEeccccCcEEEEEehhhhhhhhhcCC
Confidence 111 2237888888999999999999888889989
Q ss_pred CCcccEEEecC---CC-CeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC-CCCEEEEEeCCCcE
Q 013578 249 QLKNNMAAISP---NG-RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP-NSEQIITASKDGTL 323 (440)
Q Consensus 249 ~~~v~~~~~s~---~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~dg~i 323 (440)
..++..++|-+ +. .+|++-.....|.+|+..++. .............|+.+.| |.+.++.-+..|.+
T Consensus 109 ~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~--------k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~v 180 (1062)
T KOG1912|consen 109 NDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE--------KFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFV 180 (1062)
T ss_pred CcchhheeeeeccCcchheeEEecCCcEEEEEEccCCc--------eeeccccCCcceeeeeeCCCCcceEEEEccCceE
Confidence 99999998865 33 567777778899999988776 3444443445567799998 66777777777777
Q ss_pred EEEecCccccccCCCCccccccc---------------cccCCCCCe---eeeeeEEeCCCCC-EEEEecCCEEEEEEcC
Q 013578 324 RVWNINVRYHLDEDPKTLKVLPI---------------PLLDSNGAT---LQYDRLSLSSDGK-ILAATHGSTLQWLSVE 384 (440)
Q Consensus 324 ~iwd~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~---~~v~~~~~s~~g~-~l~~~~~~~i~i~d~~ 384 (440)
.+-+.-.........+......- ......... .-...++|+|.-+ .+.......+.++|++
T Consensus 181 l~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle 260 (1062)
T KOG1912|consen 181 LSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLE 260 (1062)
T ss_pred EEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcch
Confidence 77765432221111111110000 000000000 0122467888755 5556678999999999
Q ss_pred CccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 385 TGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 385 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
-..++..+. -..+.+.-+.|-|+. .+ ..|++.-.||.+.+|....
T Consensus 261 ~~~~l~vvp-ier~~akfv~vlP~~-----~r-d~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 261 YECCLAVVP-IERGGAKFVDVLPDP-----RR-DALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hhceeEEEE-eccCCcceeEeccCC-----Cc-ceEEEEecCCeEEEEEeec
Confidence 888887763 456667778888885 22 6899999999999997654
No 288
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.99 E-value=1e-09 Score=100.58 Aligned_cols=257 Identities=15% Similarity=0.169 Sum_probs=160.5
Q ss_pred ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
..++|..|+..-+|++|+-+.++|+.|+..|.|+++++.++..+ .....|+..|+.+.-+-+|..+++.+.-..
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e-----~s~ncH~SavT~vePs~dgs~~Ltsss~S~- 1166 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME-----ESVNCHQSAVTLVEPSVDGSTQLTSSSSSS- 1166 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccc-----ccccccccccccccccCCcceeeeeccccC-
Confidence 56788899999999999999999999999999999999988643 455678899999999999998887764321
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL 242 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 242 (440)
....+|+....... .| ......++-|+.... .-+.|+......+||++++..+
T Consensus 1167 PlsaLW~~~s~~~~--------------------~H------sf~ed~~vkFsn~~q-~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGP--------------------RH------SFDEDKAVKFSNSLQ-FRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred chHHHhccccccCc--------------------cc------cccccceeehhhhHH-HHHhcccccceEEEecccCcHH
Confidence 11122332221000 00 000011111122222 2223333345899999999877
Q ss_pred eeeeC----CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe
Q 013578 243 GNVDT----NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS 318 (440)
Q Consensus 243 ~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~ 318 (440)
.++-. .+..-++..|+|+..+++ .|| .+||++... .++.+......+ .=.|+|.|..++..+
T Consensus 1220 ~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~--------aIh~FD~ft~~~-~G~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1220 QTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPE--------AIHRFDQFTDYG-GGGFHPSGNEVIINS 1285 (1516)
T ss_pred HHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHH--------HHhhhhhheecc-cccccCCCceEEeec
Confidence 66321 223346789999998876 455 579997664 455554433222 235999999988877
Q ss_pred CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec---C---------------CEEEE
Q 013578 319 KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH---G---------------STLQW 380 (440)
Q Consensus 319 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---~---------------~~i~i 380 (440)
. |||+++-+.+...+..- -..+.|+..|..+.+.- | ...+-
T Consensus 1286 E-----IwD~RTF~lLh~VP~Ld----------------qc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRT 1344 (1516)
T KOG1832|consen 1286 E-----IWDMRTFKLLHSVPSLD----------------QCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRT 1344 (1516)
T ss_pred h-----hhhhHHHHHHhcCcccc----------------ceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhcc
Confidence 5 89999876654333221 23588888888765532 0 23344
Q ss_pred EEcCCccchhhhhccccCCeEEEEecCCC
Q 013578 381 LSVETGKVLDTAEKAHEGEITCMAWAPKT 409 (440)
Q Consensus 381 ~d~~~~~~~~~~~~~h~~~v~~v~~~~~~ 409 (440)
+|...-..+.++. -..+|.+++-.|..
T Consensus 1345 f~a~dYs~iaTi~--v~R~~~Dlct~~~D 1371 (1516)
T KOG1832|consen 1345 FDAIDYSDIATIP--VDRCLLDLCTEPTD 1371 (1516)
T ss_pred ccccccccceeee--cccchhhhhcCCcc
Confidence 4544455555543 34456666666654
No 289
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.98 E-value=2e-08 Score=80.41 Aligned_cols=149 Identities=11% Similarity=0.129 Sum_probs=95.2
Q ss_pred EEEEeeCCceEEEEeCC-CCceeee-eeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec
Q 013578 221 IIASCSEGTDISIWHGK-TGKLLGN-VDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG 297 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~-~~~~~~~-~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 297 (440)
++++|++|+.+..||++ .++.+.. .+.|...|.++.-+| .+.++++|+.|-.|++||.+.-.. ++..-.
T Consensus 180 lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k-------Pl~~~~- 251 (339)
T KOG0280|consen 180 LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK-------PLFKAK- 251 (339)
T ss_pred eEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC-------ccccCc-
Confidence 89999999999999998 4444433 456777788887765 688999999999999999985441 232222
Q ss_pred cccceEEEEEcCCC--CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-
Q 013578 298 HKSAVTWLCFAPNS--EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH- 374 (440)
Q Consensus 298 h~~~v~~~~~~p~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~- 374 (440)
-.+.|+.+.++|.- ..|+++-.+ -.+|-+++....- +.........|..-+..-.|.....+||+++
T Consensus 252 v~GGVWRi~~~p~~~~~lL~~CMh~-G~ki~~~~~~~~e---------~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsF 321 (339)
T KOG0280|consen 252 VGGGVWRIKHHPEIFHRLLAACMHN-GAKILDSSDKVLE---------FQIVLPSDKIHDSLCYGGDWDSKDSFLATCSF 321 (339)
T ss_pred cccceEEEEecchhhhHHHHHHHhc-CceEEEecccccc---------hheeeeccccccceeeccccccccceeeeeec
Confidence 34789999999943 334444444 4677776643211 1122223334444344444533345788754
Q ss_pred -CCEEE-EEEcCCcc
Q 013578 375 -GSTLQ-WLSVETGK 387 (440)
Q Consensus 375 -~~~i~-i~d~~~~~ 387 (440)
|+.++ +|-..+++
T Consensus 322 YDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 322 YDKKIRQLWLHITGE 336 (339)
T ss_pred cccceeeeeeeccCC
Confidence 67654 77655554
No 290
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.98 E-value=2.8e-06 Score=71.39 Aligned_cols=168 Identities=21% Similarity=0.288 Sum_probs=98.1
Q ss_pred EEEeeCCceEEEEeCCCCceeeeeeC-----CCCcccEEEecCCCCeEEEEecCCC------EEEEEeEecCCCceeeee
Q 013578 222 IASCSEGTDISIWHGKTGKLLGNVDT-----NQLKNNMAAISPNGRFLAAAAFTAD------VKVWEIVYSKDGLVKAVT 290 (440)
Q Consensus 222 l~s~~~d~~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~dg~------i~i~d~~~~~~~~~~~~~ 290 (440)
++.+..++ +.++|..+++....... .....+.+++.++|++.++...... =.+|.+....
T Consensus 54 l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~-------- 124 (246)
T PF08450_consen 54 LYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDG-------- 124 (246)
T ss_dssp EEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTS--------
T ss_pred EEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCC--------
Confidence 44444444 56668887754433322 3345678999999997766554321 2344443321
Q ss_pred eeeeeeccccceEEEEEcCCCCEEE-EEeCCCcEEEEecCcccc-ccCCCCccccccccccCCCCCeeeeeeEEeCCCCC
Q 013578 291 SVMQLKGHKSAVTWLCFAPNSEQII-TASKDGTLRVWNINVRYH-LDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK 368 (440)
Q Consensus 291 ~~~~~~~h~~~v~~~~~~p~~~~l~-s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 368 (440)
.+..+...-...+.|+|+|+++.|+ +-+..+.|..+++..... +. ..+. .............+++..+|+
T Consensus 125 ~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~----~~~~----~~~~~~~~g~pDG~~vD~~G~ 196 (246)
T PF08450_consen 125 KVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELS----NRRV----FIDFPGGPGYPDGLAVDSDGN 196 (246)
T ss_dssp EEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEE----EEEE----EEE-SSSSCEEEEEEEBTTS-
T ss_pred eEEEEecCcccccceEECCcchheeecccccceeEEEecccccccee----eeee----EEEcCCCCcCCCcceEcCCCC
Confidence 1222222345578999999998775 556778898888863221 10 0000 011111112345799999999
Q ss_pred EEEEe-cCCEEEEEEcCCccchhhhhccccCCeEEEEec-CC
Q 013578 369 ILAAT-HGSTLQWLSVETGKVLDTAEKAHEGEITCMAWA-PK 408 (440)
Q Consensus 369 ~l~~~-~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~-~~ 408 (440)
+.++. ..+.|.+++.. |+.+..+..+ ...+++++|. ++
T Consensus 197 l~va~~~~~~I~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~ 236 (246)
T PF08450_consen 197 LWVADWGGGRIVVFDPD-GKLLREIELP-VPRPTNCAFGGPD 236 (246)
T ss_dssp EEEEEETTTEEEEEETT-SCEEEEEE-S-SSSEEEEEEESTT
T ss_pred EEEEEcCCCEEEEECCC-ccEEEEEcCC-CCCEEEEEEECCC
Confidence 77664 48999999988 8888777533 4589999994 44
No 291
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=7.8e-07 Score=80.07 Aligned_cols=165 Identities=13% Similarity=0.103 Sum_probs=96.4
Q ss_pred CCCCCe-EEEEeeC--CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEe-cCC--CEEEEEeEecCCCceee
Q 013578 215 TADGST-IIASCSE--GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAA-FTA--DVKVWEIVYSKDGLVKA 288 (440)
Q Consensus 215 ~~~~~~-~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~ 288 (440)
+|||+. .+++... +..|+++|+.+++...... .........|+|||+.++... .++ .|.++|+..+.
T Consensus 196 SpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~------ 268 (419)
T PRK04043 196 ANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT------ 268 (419)
T ss_pred CCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc------
Confidence 566653 2222222 3569999998886644333 344455678999998776543 343 46666654332
Q ss_pred eeeeeeeeccccceEEEEEcCCCCEEEEEe-CCC--cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC
Q 013578 289 VTSVMQLKGHKSAVTWLCFAPNSEQIITAS-KDG--TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS 365 (440)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 365 (440)
...+..+........|+|||+.|+-.+ ..+ .|.+.|+.++...+ +. . .+. ....|+|
T Consensus 269 ---~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r--------lt---~--~g~----~~~~~SP 328 (419)
T PRK04043 269 ---LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ--------VV---F--HGK----NNSSVST 328 (419)
T ss_pred ---EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe--------Cc---c--CCC----cCceECC
Confidence 222333333334568999999877655 333 56777776543210 00 0 111 1248999
Q ss_pred CCCEEEEec-C---------CEEEEEEcCCccchhhhhccccCCeEEEEecCCC
Q 013578 366 DGKILAATH-G---------STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKT 409 (440)
Q Consensus 366 ~g~~l~~~~-~---------~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~ 409 (440)
||++++... . ..|++.|+.+++..... . . +......|+|||
T Consensus 329 DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT-~-~-~~~~~p~~SPDG 379 (419)
T PRK04043 329 YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLT-A-N-GVNQFPRFSSDG 379 (419)
T ss_pred CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECC-C-C-CCcCCeEECCCC
Confidence 999887642 1 37888899888653322 1 2 233468899998
No 292
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.92 E-value=6.2e-09 Score=58.95 Aligned_cols=37 Identities=32% Similarity=0.781 Sum_probs=35.5
Q ss_pred eeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578 291 SVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN 327 (440)
Q Consensus 291 ~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd 327 (440)
++..+.+|.+.|++|+|+|++.+|++++.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 6788999999999999999999999999999999997
No 293
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.92 E-value=6.1e-07 Score=72.26 Aligned_cols=114 Identities=11% Similarity=0.159 Sum_probs=69.5
Q ss_pred EEEEeeCCceEEEEeCCC-----CceeeeeeC---CCCcccEEEecCCCCeEEEEecC----C-------CEEEEEeEec
Q 013578 221 IIASCSEGTDISIWHGKT-----GKLLGNVDT---NQLKNNMAAISPNGRFLAAAAFT----A-------DVKVWEIVYS 281 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~-----~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~d----g-------~i~i~d~~~~ 281 (440)
.|+.-..+|.++-|-+.. .+....+.. ....|.++.++|..++|++|+.. + -+..|.+-.+
T Consensus 111 ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~ 190 (282)
T PF15492_consen 111 ELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSD 190 (282)
T ss_pred eEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCC
Confidence 344455566666655422 222333322 35578999999999999888632 1 2566775322
Q ss_pred CC---------Cce------eeeeeeee------eeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccc
Q 013578 282 KD---------GLV------KAVTSVMQ------LKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHL 334 (440)
Q Consensus 282 ~~---------~~~------~~~~~~~~------~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~ 334 (440)
.. ... .....+.. .......|..|..||||..||+...+|.|.+|++......
T Consensus 191 ~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 191 SPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred CCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 10 000 00000111 1123567999999999999999999999999999865443
No 294
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.91 E-value=4.3e-07 Score=90.91 Aligned_cols=208 Identities=16% Similarity=0.093 Sum_probs=124.9
Q ss_pred cccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeC-C-------------CCcccEEEecCCCCeEEEEec-CCCEEEE
Q 013578 212 TYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDT-N-------------QLKNNMAAISPNGRFLAAAAF-TADVKVW 276 (440)
Q Consensus 212 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~-------------~~~v~~~~~s~~~~~l~~~~~-dg~i~i~ 276 (440)
++..+.+..++++-+.++.|++||.. +..+..+.. . -.....++++++++.|+++.. ++.|+++
T Consensus 573 vavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~i 651 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREI 651 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEE
Confidence 34455444477777888899999975 544443322 0 123577899999887777654 4678888
Q ss_pred EeEecCCCceeeeeeeeeeec----------c-------ccceEEEEEcC-CCCEEEEEeCCCcEEEEecCccccccCCC
Q 013578 277 EIVYSKDGLVKAVTSVMQLKG----------H-------KSAVTWLCFAP-NSEQIITASKDGTLRVWNINVRYHLDEDP 338 (440)
Q Consensus 277 d~~~~~~~~~~~~~~~~~~~~----------h-------~~~v~~~~~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 338 (440)
|+..+. +..+.+ . -.....++++| ++..+++.+.++.|++||..++.......
T Consensus 652 d~~~~~---------V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G 722 (1057)
T PLN02919 652 DFVNET---------VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSG 722 (1057)
T ss_pred ecCCCE---------EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEec
Confidence 874432 111110 0 12346899999 56666777788999999987653311000
Q ss_pred Cc-cccccccccCCCCCeeeeeeEEeCCCCCEEEEe--cCCEEEEEEcCCccchhh-------------hh-------cc
Q 013578 339 KT-LKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT--HGSTLQWLSVETGKVLDT-------------AE-------KA 395 (440)
Q Consensus 339 ~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~--~~~~i~i~d~~~~~~~~~-------------~~-------~~ 395 (440)
.. ...... .......-.....++++|+|..|.++ .++.|++||+.++..... +- ..
T Consensus 723 ~G~~~~~~g-~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~ 801 (1057)
T PLN02919 723 DGYERNLNG-SSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV 801 (1057)
T ss_pred CCccccCCC-CccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence 00 000000 00000011234569999999855544 368999999987653110 00 00
Q ss_pred ccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 396 HEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 396 h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
.-.....+++++++ .++++-+.+++|++||..+++
T Consensus 802 ~l~~P~Gvavd~dG--------~LYVADs~N~rIrviD~~tg~ 836 (1057)
T PLN02919 802 LLQHPLGVLCAKDG--------QIYVADSYNHKIKKLDPATKR 836 (1057)
T ss_pred hccCCceeeEeCCC--------cEEEEECCCCEEEEEECCCCe
Confidence 11234688999987 788888889999999987653
No 295
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.90 E-value=1.3e-06 Score=69.39 Aligned_cols=191 Identities=10% Similarity=0.016 Sum_probs=125.2
Q ss_pred EEEEeeCCceEEEEeCCCCcee-eeeeCCCCcccEEEe-cCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc
Q 013578 221 IIASCSEGTDISIWHGKTGKLL-GNVDTNQLKNNMAAI-SPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH 298 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~-~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h 298 (440)
+|+.|+..|...+|...+.+.. +....+...|+-+.- .-..-.+..++.|.+++++++..+..+ ...|
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~----------~~~h 155 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK----------FAVH 155 (344)
T ss_pred EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc----------ceee
Confidence 7899999999999999866543 333333333322211 112234667788899999888654411 1123
Q ss_pred cc--ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-C
Q 013578 299 KS--AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-G 375 (440)
Q Consensus 299 ~~--~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~ 375 (440)
.. .+.+++++++++++++.+....|..|.+...... ..+.. ...... .-.+.+|+.....+|++. |
T Consensus 156 ~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey-----~~~~~---~a~t~D---~gF~~S~s~~~~~FAv~~Qd 224 (344)
T KOG4532|consen 156 NQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEY-----IENIY---EAPTSD---HGFYNSFSENDLQFAVVFQD 224 (344)
T ss_pred ccccceeeeEEcCCCceEEEecCCCcceEEEeCCccce-----eeeeE---ecccCC---CceeeeeccCcceEEEEecC
Confidence 32 3789999999999999999999999988743221 11111 111111 123688999998888876 9
Q ss_pred CEEEEEEcCCccchhhh----hccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 376 STLQWLSVETGKVLDTA----EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 376 ~~i~i~d~~~~~~~~~~----~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
|.+.|||++....+... ...|.+.+..+.|++.|+ ..+|+-.-.=+.+.|-|+++++
T Consensus 225 g~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~------lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 225 GTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL------LDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred CcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc------ceEEEEecCcceEEEEEcccCc
Confidence 99999999876543222 245889999999998652 1355554456778888887764
No 296
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.88 E-value=2.8e-07 Score=79.67 Aligned_cols=253 Identities=15% Similarity=0.182 Sum_probs=158.8
Q ss_pred cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeec
Q 013578 90 HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYG 169 (440)
Q Consensus 90 H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~ 169 (440)
-.-++..++|||.|.+|++....| |.+|.-.... ++.+.. | ..|..+.|+|++++|.+-......
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~----~l~~~~--~-~~V~~~~fSP~~kYL~tw~~~pi~------- 95 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKA----KLVRFR--H-PDVKYLDFSPNEKYLVTWSREPII------- 95 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchh----heeeee--c-CCceecccCcccceeeeeccCCcc-------
Confidence 456788999999999999887665 8999876554 122221 2 678999999999998876543100
Q ss_pred cccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCC
Q 013578 170 EEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQ 249 (440)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 249 (440)
.|+.. ..--..+..+.+||+.++..+..+....
T Consensus 96 ---------------------------------------------~pe~e--~sp~~~~n~~~vwd~~sg~iv~sf~~~~ 128 (561)
T COG5354 96 ---------------------------------------------EPEIE--ISPFTSKNNVFVWDIASGMIVFSFNGIS 128 (561)
T ss_pred ---------------------------------------------Chhhc--cCCccccCceeEEeccCceeEeeccccC
Confidence 00000 0001123369999999999998887655
Q ss_pred Cc--cc-EEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCC--EEEE-----EeC
Q 013578 250 LK--NN-MAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSE--QIIT-----ASK 319 (440)
Q Consensus 250 ~~--v~-~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~--~l~s-----~~~ 319 (440)
.+ .. -+.|+-+.+++|-. ....++|+++ +.. ........++ ...|....|+|.++ .||. .+.
T Consensus 129 q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n----~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~k 200 (561)
T COG5354 129 QPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDN----IEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNK 200 (561)
T ss_pred Ccccccceeeeeecchhhhhh-ccCeEEEEec-CCc----cccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCC
Confidence 44 33 67889888877655 3457899997 222 0011122222 25688889999643 3443 356
Q ss_pred CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe------------cCCEEEEEEcCCcc
Q 013578 320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT------------HGSTLQWLSVETGK 387 (440)
Q Consensus 320 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~------------~~~~i~i~d~~~~~ 387 (440)
++++++|.+..+..+.. . .+. ...=..+.|.+.|.+|.+- ...+++++++....
T Consensus 201 pa~~~i~sIp~~s~l~t-----k----~lf-----k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~ 266 (561)
T COG5354 201 PAMVRILSIPKNSVLVT-----K----NLF-----KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS 266 (561)
T ss_pred CcEEEEEEccCCCeeee-----e----eeE-----eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc
Confidence 78899998874332211 0 001 1112258899999977651 13678999988444
Q ss_pred chhhhhccccCCeEEEEecCCCCCCCCCcceEEEE--eeCCCeEEEEeCCC
Q 013578 388 VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLAT--SSVDKKVKLWLAPS 436 (440)
Q Consensus 388 ~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t--~~~Dg~i~vw~~~~ 436 (440)
+.... .-.++|.+.+|.|.+ +.+++ |-.+-.+.+++++.
T Consensus 267 i~V~~--~~~~pVhdf~W~p~S--------~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 267 IPVEK--DLKDPVHDFTWEPLS--------SRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred cceec--cccccceeeeecccC--------CceeEEecccccceeeccccc
Confidence 43332 467899999999997 44443 34566677766653
No 297
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=3.2e-08 Score=81.08 Aligned_cols=168 Identities=14% Similarity=0.202 Sum_probs=114.8
Q ss_pred EEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccce
Q 013578 223 ASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAV 302 (440)
Q Consensus 223 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v 302 (440)
++.+.+..|-+-|+++|... .+. ..+.|.++.|...+++++.|..+|.|..+|++....+... +...+. |.+.|
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~---~a~rly-h~Ssv 301 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGW---CAQRLY-HDSSV 301 (425)
T ss_pred ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCc---ceEEEE-cCcch
Confidence 45555666888998887543 333 4667889999999999999999999999999987544332 333333 88999
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeee--eeeEEeCCC-CCEEEEecCCEE
Q 013578 303 TWLCFAP-NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQ--YDRLSLSSD-GKILAATHGSTL 378 (440)
Q Consensus 303 ~~~~~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~s~~-g~~l~~~~~~~i 378 (440)
+++..-. ++.+|.+.+.+|+|++||++..++-. .+..+ .+|... -.-+...+. |-++++|+|-..
T Consensus 302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~----~V~qY-------eGHvN~~a~l~~~v~~eeg~I~s~GdDcyt 370 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKK----SVMQY-------EGHVNLSAYLPAHVKEEEGSIFSVGDDCYT 370 (425)
T ss_pred hhhhhhccccceEeeccCcCceeEeeehhhhccc----ceeee-------ecccccccccccccccccceEEEccCeeEE
Confidence 9988776 78889999999999999999665411 01111 111111 111223343 445556778899
Q ss_pred EEEEcCCccchhhhhcc---ccCCeEEEEecC
Q 013578 379 QWLSVETGKVLDTAEKA---HEGEITCMAWAP 407 (440)
Q Consensus 379 ~i~d~~~~~~~~~~~~~---h~~~v~~v~~~~ 407 (440)
+||.+.+|.++.++... .+..+.+++|..
T Consensus 371 RiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred EEEecccCceeeccCCCCccccccccceehhc
Confidence 99999999998887522 223466677654
No 298
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=1.9e-06 Score=75.50 Aligned_cols=268 Identities=13% Similarity=0.126 Sum_probs=141.9
Q ss_pred cCcceeEEEEccCCCEEEEeeC-----------CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEee
Q 013578 90 HGDSVTGLCFSSDGKCLATACA-----------DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATH 158 (440)
Q Consensus 90 H~~~V~~l~~s~dg~~l~t~s~-----------dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~ 158 (440)
|. .|.-+.|||..+||+|-|. -..++|||+.++..... ..........-.-..||.|+++++-...
T Consensus 249 Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrs--F~~~~~~~~~WP~frWS~DdKy~Arm~~ 325 (698)
T KOG2314|consen 249 HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRS--FPVIKSPYLKWPIFRWSHDDKYFARMTG 325 (698)
T ss_pred CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcc--eeccCCCccccceEEeccCCceeEEecc
Confidence 44 4889999999999999653 15699999998864311 1111111122234689999999998776
Q ss_pred cCCcceEEeeccccccccc-------cccccCCCCC----------------CceeecccccccceeEEE-eeccccccc
Q 013578 159 NLSGCSLYMYGEEKAISTN-------EGKQQSKLPG----------------PEIKWEHHKVHDKRAILT-LFGASATYG 214 (440)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 214 (440)
+ .|.+++........ ..+...-.+. .......+.....+.... ....+.+.+
T Consensus 326 ~----sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhW 401 (698)
T KOG2314|consen 326 N----SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHW 401 (698)
T ss_pred c----eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEe
Confidence 4 55555544321110 0000000000 001111111111111000 011111222
Q ss_pred CCCCCeEEEEe----------eCCceEEEEeCCCCce-eeeeeCCCCcccEEEecCCCCeEEEEec---CCCEEEEEeEe
Q 013578 215 TADGSTIIASC----------SEGTDISIWHGKTGKL-LGNVDTNQLKNNMAAISPNGRFLAAAAF---TADVKVWEIVY 280 (440)
Q Consensus 215 ~~~~~~~l~s~----------~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~i~d~~~ 280 (440)
..+|. +|+.- +.-..+.|+.++.... +..+. -...+...+|.|.|+.+++-+. ..++.+|.+..
T Consensus 402 Qk~gd-yLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 402 QKSGD-YLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred ccCCc-EEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence 33444 33221 1111133333332221 12222 2345677899999998887654 45688998864
Q ss_pred cCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe---CCCcEEEEecCccccccCCCCccccccccccCCCCCeee
Q 013578 281 SKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS---KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQ 357 (440)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (440)
.. ..+..+..+.. ...+.+.|+|.|++++.+. ..|.+.++|+....+.. .....| ..
T Consensus 480 ~~----~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~-------------~~~~eh-~~ 539 (698)
T KOG2314|consen 480 NI----KKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKD-------------TASPEH-FA 539 (698)
T ss_pred CC----Cchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhh-------------ccCccc-cc
Confidence 22 22334444443 4567899999999987654 57889999987422111 001111 12
Q ss_pred eeeEEeCCCCCEEEEec-------CCEEEEEEcCCc
Q 013578 358 YDRLSLSSDGKILAATH-------GSTLQWLSVETG 386 (440)
Q Consensus 358 v~~~~~s~~g~~l~~~~-------~~~i~i~d~~~~ 386 (440)
.+.+.|.|.|+|+++++ |..-++|+....
T Consensus 540 at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 540 ATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred cccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence 45699999999999864 456778877543
No 299
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=1.4e-07 Score=85.66 Aligned_cols=219 Identities=15% Similarity=0.169 Sum_probs=139.3
Q ss_pred cccccccccCcceeEEEEccCC------------CEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccC
Q 013578 82 LDVNTLKGHGDSVTGLCFSSDG------------KCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADN 149 (440)
Q Consensus 82 ~~~~~l~~H~~~V~~l~~s~dg------------~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~ 149 (440)
+.+++++-|...|+.+.|.|-. -+||++...|.|.+||...... ......+..++..++|.+.
T Consensus 46 q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~-----~~~l~~~~~~~qdl~W~~~ 120 (1062)
T KOG1912|consen 46 QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASV-----INWLSHSNDSVQDLCWVPA 120 (1062)
T ss_pred hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhh-----hhhhcCCCcchhheeeeec
Confidence 3577888999999999998731 2577888889999999987642 2344566678888888764
Q ss_pred CCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCc
Q 013578 150 ATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGT 229 (440)
Q Consensus 150 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 229 (440)
. ++.+.+|+.-....
T Consensus 121 r-----------------------------------------------------------------d~Srd~LlaIh~ss 135 (1062)
T KOG1912|consen 121 R-----------------------------------------------------------------DDSRDVLLAIHGSS 135 (1062)
T ss_pred c-----------------------------------------------------------------CcchheeEEecCCc
Confidence 2 12222555555667
Q ss_pred eEEEEeCCCCceeeeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc--------
Q 013578 230 DISIWHGKTGKLLGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS-------- 300 (440)
Q Consensus 230 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~-------- 300 (440)
+|.+|+..+|+....+........|+.+.| |.+.+..-+..|.+.+-+.-......... +..+.-..|.+
T Consensus 136 ~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pg-k~~qI~sd~Sdl~~lere~ 214 (1062)
T KOG1912|consen 136 TLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPG-KEFQITSDHSDLAHLERET 214 (1062)
T ss_pred EEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCc-eeEEEecCccchhhhhhhh
Confidence 799999999999888877666778899988 56677777778877777653222111100 01111111111
Q ss_pred --------c---------eEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe
Q 013578 301 --------A---------VTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL 363 (440)
Q Consensus 301 --------~---------v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 363 (440)
. ...++|+|.-+.++-......+.++|++-..++ ...+++ . ..+.-+.+
T Consensus 215 at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l-------~vvpie-----r--~~akfv~v 280 (1062)
T KOG1912|consen 215 ATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCL-------AVVPIE-----R--GGAKFVDV 280 (1062)
T ss_pred hccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhcee-------EEEEec-----c--CCcceeEe
Confidence 0 123667886665555566778999999844332 111111 1 11224667
Q ss_pred CCCCC--EEEEec-CCEEEEEEcCC
Q 013578 364 SSDGK--ILAATH-GSTLQWLSVET 385 (440)
Q Consensus 364 s~~g~--~l~~~~-~~~i~i~d~~~ 385 (440)
-|+++ .|.+.. +|.+.+|-.+.
T Consensus 281 lP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 281 LPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ccCCCcceEEEEecCCeEEEEEeec
Confidence 77655 666654 89999997655
No 300
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.85 E-value=1.2e-08 Score=91.91 Aligned_cols=202 Identities=18% Similarity=0.246 Sum_probs=135.5
Q ss_pred cccccccCCCCCeEEEEeeCCceEEEEeCCCC-ceeeeee-CCCCcccEEEecCCC--CeEEEEecCCCEEEEEeEecCC
Q 013578 208 GASATYGTADGSTIIASCSEGTDISIWHGKTG-KLLGNVD-TNQLKNNMAAISPNG--RFLAAAAFTADVKVWEIVYSKD 283 (440)
Q Consensus 208 ~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~~~-~~~~~v~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~ 283 (440)
+...+...|.|+ -++.++.-| +.+.|+... .+-+.+. ...-.+-.+.|+|.. .+-++.....+-.+|++....+
T Consensus 26 ~~~a~si~p~gr-di~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~ 103 (1081)
T KOG0309|consen 26 GFNAVSINPSGR-DIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS 103 (1081)
T ss_pred cccceeeccccc-hhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCc
Confidence 344455577777 555566655 667776542 2222221 112235566777643 3444445566667899866543
Q ss_pred CceeeeeeeeeeeccccceEEEEEcCCCC-EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEE
Q 013578 284 GLVKAVTSVMQLKGHKSAVTWLCFAPNSE-QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS 362 (440)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 362 (440)
.. ....+.+|...|+.+.|+|+.. .+++++.|-.+..||++..... ++....-...-..+.
T Consensus 104 ~a-----Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p-------------~ys~~~w~s~asqVk 165 (1081)
T KOG0309|consen 104 NA-----IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP-------------FYSTSSWRSAASQVK 165 (1081)
T ss_pred cc-----eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcc-------------eeeeecccccCceee
Confidence 22 3456789999999999999654 6899999999999999964321 111111122245688
Q ss_pred eCC-CCCEEEEecCCEEEEEEcCCcc-chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 363 LSS-DGKILAATHGSTLQWLSVETGK-VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 363 ~s~-~g~~l~~~~~~~i~i~d~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
|+- ++..+|...++.|++||.+.|. ++..+ ++|...|+.++|...- ...+.+++.||+|+.|+....
T Consensus 166 wnyk~p~vlasshg~~i~vwd~r~gs~pl~s~-K~~vs~vn~~~fnr~~-------~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 166 WNYKDPNVLASSHGNDIFVWDLRKGSTPLCSL-KGHVSSVNSIDFNRFK-------YSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred ecccCcchhhhccCCceEEEeccCCCcceEEe-cccceeeehHHHhhhh-------hhhhcccCCCCceeeeccccc
Confidence 875 4567777789999999998876 45555 6899999999998653 157899999999999998753
No 301
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=1.4e-08 Score=88.36 Aligned_cols=174 Identities=20% Similarity=0.224 Sum_probs=125.3
Q ss_pred eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC
Q 013578 242 LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG 321 (440)
Q Consensus 242 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg 321 (440)
+..+.+|+..|+.++--.+.+.+++++.|.+|++|.++...++. ....+..++..|+.+|.++.|-.+-++++++ ||
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~-~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEI-GTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcc-ccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 45567888888888766778889999999999999998766443 2233677889999999999999988888766 78
Q ss_pred cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC--CCCEEEEe-c-CCEEEEEEcCCccchhhhh----
Q 013578 322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS--DGKILAAT-H-GSTLQWLSVETGKVLDTAE---- 393 (440)
Q Consensus 322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~-~-~~~i~i~d~~~~~~~~~~~---- 393 (440)
.|.+||.--+..+.+.... +. .+. +..+..-+ +..++.+| + ..+|+++|.+.++-...+.
T Consensus 805 giHlWDPFigr~Laq~~da------pk---~~a---~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna 872 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDA------PK---EGA---GGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA 872 (1034)
T ss_pred cceeecccccchhHhhhcC------cc---cCC---CceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC
Confidence 9999997655443221110 00 111 11222222 34445444 3 7899999999887554442
Q ss_pred ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 394 KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 394 ~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
.+..+.+.+++..+.| +.++.+=+.|.|-+-|.++|+
T Consensus 873 ~~Pna~~R~iaVa~~G--------N~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 873 PGPNALTRAIAVADKG--------NKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred CCCchheeEEEeccCc--------chhhHHhcCCcEEEEecCCCc
Confidence 2344678999999998 899999999999999998876
No 302
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.82 E-value=1.3e-07 Score=87.38 Aligned_cols=178 Identities=12% Similarity=0.159 Sum_probs=126.4
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~ 300 (440)
.++-|+-...+..+|+.+.+..+........+.-+ -.+++++.+|...|+|.+-|.++.+ .++++.+|++
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~--------~iht~~aHs~ 218 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFE--------TIHTFDAHSG 218 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEE--EecCcEEEeecccceEEeecCCcCc--------eeeeeecccc
Confidence 56667766778889999888877766555444444 4567899999999999999986665 7899999999
Q ss_pred ceEEEEEcCCCCEEEEEeC---------CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC--CCE
Q 013578 301 AVTWLCFAPNSEQIITASK---------DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD--GKI 369 (440)
Q Consensus 301 ~v~~~~~~p~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~ 369 (440)
.|..+.. .|+.|++|+. |.-|++||++..+.+.. +..+... .-+.|.|. .+.
T Consensus 219 siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P-------I~~~~~P--------~flrf~Psl~t~~ 281 (1118)
T KOG1275|consen 219 SISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP-------IQFPYGP--------QFLRFHPSLTTRL 281 (1118)
T ss_pred ceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCC-------cccccCc--------hhhhhcccccceE
Confidence 9988776 6889999874 56689999997654321 1111110 12556665 334
Q ss_pred EEEecCCEEEEEEcCCcc-chhhhh--ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578 370 LAATHGSTLQWLSVETGK-VLDTAE--KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL 433 (440)
Q Consensus 370 l~~~~~~~i~i~d~~~~~-~~~~~~--~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~ 433 (440)
.++...|...+.|..+.. ...... ..-...+..+++++++ ..|+.|..+|.|.+|.
T Consensus 282 ~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~--------~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 282 AVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNG--------DALAFGDHEGHVNLWA 340 (1118)
T ss_pred EEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCC--------ceEEEecccCcEeeec
Confidence 445568888888854332 211111 1233459999999998 8999999999999998
No 303
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=9.4e-08 Score=81.22 Aligned_cols=253 Identities=15% Similarity=0.119 Sum_probs=160.9
Q ss_pred CCCCCCCCcccCccc-------cccccccCcceeEEEEccCCCEEEEeeC-CCcEEEEecCCCCCcceeeEEecCCCCCC
Q 013578 69 SHGDKDQNKRHHPLD-------VNTLKGHGDSVTGLCFSSDGKCLATACA-DGVIRVHKLDDASSKSFKFLRINLPPGGP 140 (440)
Q Consensus 69 ~~~~~~~~~~~~~~~-------~~~l~~H~~~V~~l~~s~dg~~l~t~s~-dg~v~vW~~~~~~~~~~~~~~~~~~~~~~ 140 (440)
.+++-|+..+.|... +..+..|-+.|.+++.+-||.++.|.+. |..++++|+++-..... ++. ...
T Consensus 24 iqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dminm--iKL----~~l 97 (558)
T KOG0882|consen 24 IQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINM--IKL----VDL 97 (558)
T ss_pred EeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhh--ccc----ccC
Confidence 344556666666442 4567889999999999999999999887 99999999986432110 000 011
Q ss_pred CceEEEccC-CCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCC
Q 013578 141 PTAVAFADN-ATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGS 219 (440)
Q Consensus 141 v~~v~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (440)
...+.|... |..+ .
T Consensus 98 Pg~a~wv~skGd~~-----------------------------------------------------------------s 112 (558)
T KOG0882|consen 98 PGFAEWVTSKGDKI-----------------------------------------------------------------S 112 (558)
T ss_pred CCceEEecCCCCee-----------------------------------------------------------------e
Confidence 111222110 0000 0
Q ss_pred eEEEEeeCCceEEEEeCCCCc--eeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEec----CC---Cceeeee
Q 013578 220 TIIASCSEGTDISIWHGKTGK--LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYS----KD---GLVKAVT 290 (440)
Q Consensus 220 ~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~----~~---~~~~~~~ 290 (440)
.+.++.-.++.+.++|-.... ....-..|..+|.++.+++-+..+++....|.|.-|..... .. ...+...
T Consensus 113 ~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eT 192 (558)
T KOG0882|consen 113 LIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHET 192 (558)
T ss_pred eEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccc
Confidence 033444567788899866443 33444568899999999999999999999999999987521 10 0011111
Q ss_pred eeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccc-------------------cCC
Q 013578 291 SVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPL-------------------LDS 351 (440)
Q Consensus 291 ~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-------------------~~~ 351 (440)
.+..+........++.|+|++..+.+-+.|..|+++++++++..+............. .-.
T Consensus 193 dLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverele 272 (558)
T KOG0882|consen 193 DLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELE 272 (558)
T ss_pred hhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHh
Confidence 2233334456788999999999999999999999999998876544222111110000 000
Q ss_pred CCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhh
Q 013578 352 NGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTA 392 (440)
Q Consensus 352 ~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~ 392 (440)
......-+.+.|...|.+|.-|.-=.|++.++.++++.+.+
T Consensus 273 k~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 273 KHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRIL 313 (558)
T ss_pred hhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEe
Confidence 01122234678999999999888777888888887665443
No 304
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.79 E-value=6.7e-08 Score=76.15 Aligned_cols=161 Identities=12% Similarity=0.053 Sum_probs=99.1
Q ss_pred CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe-----CCCc
Q 013578 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS-----KDGT 322 (440)
Q Consensus 248 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~-----~dg~ 322 (440)
+..+-.+-+.+.-++.++++..||.+.+++.+... ....+...-...-.+..+...++.+.++. .-+.
T Consensus 88 ~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~-------~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~ 160 (319)
T KOG4714|consen 88 NSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDL-------ALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDN 160 (319)
T ss_pred cCCCCCcccccccCCceEecCCCceEEEEechHHH-------hhhhhcccccccccccceeecccEEecCCcceEeeccc
Confidence 33333344445567789999999999999875421 00111111111111222222344443332 1224
Q ss_pred EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCE-EEEec-CCEEEEEEcCCccchhhhhccccCCe
Q 013578 323 LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKI-LAATH-GSTLQWLSVETGKVLDTAEKAHEGEI 400 (440)
Q Consensus 323 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v 400 (440)
.+.|+++....+ ...... ...|.+++-+|..+. +++|. ||.+-+||.+.......+.++|..++
T Consensus 161 ~~a~~~~p~~t~----------~~~~~~----~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i 226 (319)
T KOG4714|consen 161 FYANTLDPIKTL----------IPSKKA----LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEI 226 (319)
T ss_pred eeeecccccccc----------cccccc----cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhh
Confidence 555665532211 101111 122778888887664 44554 89999999999988888778999999
Q ss_pred EEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 401 TCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 401 ~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
+.+-|+|..+ ..|+++++||.+--||..+
T Consensus 227 ~eV~FHpk~p-------~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 227 WEVHFHPKNP-------EHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hheeccCCCc-------hheeEecCCCcEEEEcCCC
Confidence 9999999874 7899999999999999873
No 305
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.78 E-value=6.1e-06 Score=74.30 Aligned_cols=175 Identities=13% Similarity=0.129 Sum_probs=103.4
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCC----cc---cEEEecC--CCCeEEEEecCCCEEEEEeEecCCCceeeeee
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQL----KN---NMAAISP--NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTS 291 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~----~v---~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 291 (440)
.++.+..++.+..+|.++|+.+........ .+ ..+.-+| .+..+++++.+|.++.||..+++ .
T Consensus 192 ~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~--------~ 263 (377)
T TIGR03300 192 GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR--------V 263 (377)
T ss_pred EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc--------E
Confidence 567777888999999999987654432110 00 0000111 35678888889999999987654 2
Q ss_pred eeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE
Q 013578 292 VMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA 371 (440)
Q Consensus 292 ~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 371 (440)
+.... .. ....... .+..++.++.||.+..+|..+++.+...... ... ....... .++.+++
T Consensus 264 ~W~~~-~~-~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~-----------~~~--~~ssp~i-~g~~l~~ 325 (377)
T TIGR03300 264 LWKRD-AS-SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDEL-----------KYR--QLTAPAV-VGGYLVV 325 (377)
T ss_pred EEeec-cC-CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccc-----------cCC--ccccCEE-ECCEEEE
Confidence 22221 11 1112222 4667888889999999999877654321110 000 0111111 1233444
Q ss_pred EecCCEEEEEEcCCccchhhhhccccCCeE-EEEecCCCCCCCCCcceEEEEeeCCCeEEEE
Q 013578 372 ATHGSTLQWLSVETGKVLDTAEKAHEGEIT-CMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432 (440)
Q Consensus 372 ~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~-~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw 432 (440)
...+|.|+++|..+|+.+..+. .+...+. ...+.. ..|+.++.||.|..|
T Consensus 326 ~~~~G~l~~~d~~tG~~~~~~~-~~~~~~~~sp~~~~----------~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 326 GDFEGYLHWLSREDGSFVARLK-TDGSGIASPPVVVG----------DGLLVQTRDGDLYAF 376 (377)
T ss_pred EeCCCEEEEEECCCCCEEEEEE-cCCCccccCCEEEC----------CEEEEEeCCceEEEe
Confidence 4558999999999999988774 4443332 223333 257888899999876
No 306
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.73 E-value=3.7e-06 Score=70.40 Aligned_cols=190 Identities=14% Similarity=0.095 Sum_probs=109.0
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee-ecc-
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL-KGH- 298 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~h- 298 (440)
.+++++.++.|..||..+|+.+..+.... .+.... ...+..+++++.++.++.+|..+++ .+... ...
T Consensus 38 ~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~--------~~W~~~~~~~ 107 (238)
T PF13360_consen 38 RVYVASGDGNLYALDAKTGKVLWRFDLPG-PISGAP-VVDGGRVYVGTSDGSLYALDAKTGK--------VLWSIYLTSS 107 (238)
T ss_dssp EEEEEETTSEEEEEETTTSEEEEEEECSS-CGGSGE-EEETTEEEEEETTSEEEEEETTTSC--------EEEEEEE-SS
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEeeccc-ccccee-eecccccccccceeeeEecccCCcc--------eeeeeccccc
Confidence 56666889999999999999988777633 222221 2345667777788888888876665 22221 111
Q ss_pred --ccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeee-eeEEeCCCCCEEEEecC
Q 013578 299 --KSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQY-DRLSLSSDGKILAATHG 375 (440)
Q Consensus 299 --~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~g~~l~~~~~ 375 (440)
............+..++.+..++.|..+|+++++.+............... ....+ ..+.+. ++.++++..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~v~~~~~~ 182 (238)
T PF13360_consen 108 PPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPIS----SFSDINGSPVIS-DGRVYVSSGD 182 (238)
T ss_dssp CTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EE----EETTEEEEEECC-TTEEEEECCT
T ss_pred cccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCccee----eecccccceEEE-CCEEEEEcCC
Confidence 011122222224778888888999999999988764322111000000000 00001 123333 4555555556
Q ss_pred CE-EEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 376 ST-LQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 376 ~~-i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
+. +.+ |..+++.+... . ...+..+. ..++ ..|+.++.|+.+..||+.+++
T Consensus 183 g~~~~~-d~~tg~~~w~~--~-~~~~~~~~-~~~~--------~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 183 GRVVAV-DLATGEKLWSK--P-ISGIYSLP-SVDG--------GTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp SSEEEE-ETTTTEEEEEE--C-SS-ECECE-ECCC--------TEEEEEETTTEEEEEETTTTE
T ss_pred CeEEEE-ECCCCCEEEEe--c-CCCccCCc-eeeC--------CEEEEEeCCCEEEEEECCCCC
Confidence 64 555 99999966422 2 23333322 2333 467777799999999999986
No 307
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.70 E-value=9.2e-08 Score=78.49 Aligned_cols=110 Identities=17% Similarity=0.240 Sum_probs=83.8
Q ss_pred EEEEeeCCceEEEEeCCCC-----ceeeeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee
Q 013578 221 IIASCSEGTDISIWHGKTG-----KLLGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ 294 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~-----~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 294 (440)
+++.|...|.|..+|++.+ .+...+ .|...++++..-. ++++|.+.+.+|+|.+||++..+.+ ..+.+
T Consensus 266 Lv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~-----~~V~q 339 (425)
T KOG2695|consen 266 LVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCK-----KSVMQ 339 (425)
T ss_pred eeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcc-----cceee
Confidence 8889999999999999865 233333 3677899987766 7889999999999999999876521 13777
Q ss_pred eeccccceEEE--EEcCCCCEEEEEeCCCcEEEEecCccccccC
Q 013578 295 LKGHKSAVTWL--CFAPNSEQIITASKDGTLRVWNINVRYHLDE 336 (440)
Q Consensus 295 ~~~h~~~v~~~--~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~ 336 (440)
+.||-..-.-+ -..+....+++++.|...|||.++.+..+.+
T Consensus 340 YeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 340 YEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred eecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence 88886543333 3355667889999999999999997766543
No 308
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=2.3e-06 Score=78.48 Aligned_cols=144 Identities=17% Similarity=0.226 Sum_probs=99.1
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCC-----CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPN-----GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL 295 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 295 (440)
++++|+.||.|.|-.+-+.+...++.. ..++.+++++|+ .+.+++|+..| +.++.-+--+. . ....+
T Consensus 85 y~asCS~DGkv~I~sl~~~~~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn-----k-~~v~l 156 (846)
T KOG2066|consen 85 YVASCSDDGKVVIGSLFTDDEITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN-----K-DSVVL 156 (846)
T ss_pred eEEEecCCCcEEEeeccCCccceeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC-----c-cceee
Confidence 899999999999999888887776665 457899999998 57889999888 77776432221 1 11145
Q ss_pred eccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecC
Q 013578 296 KGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHG 375 (440)
Q Consensus 296 ~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 375 (440)
....++|.++.| .|.++|-++.+ -|++||+.++..+...+... .......--..+.|.++.+ |+.|-.
T Consensus 157 ~~~eG~I~~i~W--~g~lIAWand~-Gv~vyd~~~~~~l~~i~~p~--------~~~R~e~fpphl~W~~~~~-LVIGW~ 224 (846)
T KOG2066|consen 157 SEGEGPIHSIKW--RGNLIAWANDD-GVKVYDTPTRQRLTNIPPPS--------QSVRPELFPPHLHWQDEDR-LVIGWG 224 (846)
T ss_pred ecCccceEEEEe--cCcEEEEecCC-CcEEEeccccceeeccCCCC--------CCCCcccCCCceEecCCCe-EEEecC
Confidence 566789999999 57788877765 58999999876654322221 1111122223577877665 455666
Q ss_pred CEEEEEEcC
Q 013578 376 STLQWLSVE 384 (440)
Q Consensus 376 ~~i~i~d~~ 384 (440)
.+|+|..++
T Consensus 225 d~v~i~~I~ 233 (846)
T KOG2066|consen 225 DSVKICSIK 233 (846)
T ss_pred CeEEEEEEe
Confidence 778877776
No 309
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.68 E-value=1.2e-05 Score=77.26 Aligned_cols=235 Identities=15% Similarity=0.177 Sum_probs=132.7
Q ss_pred CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecc
Q 013578 91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGE 170 (440)
Q Consensus 91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~ 170 (440)
.+.|.++.|..+++.++.+..+|.|.+-|.++...+ ....-...|.+++|+||++.++..+... ..+.+-..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e------ivg~vd~GI~aaswS~Dee~l~liT~~~--tll~mT~~ 139 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE------IVGNVDNGISAASWSPDEELLALITGRQ--TLLFMTKD 139 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee------eeeeccCceEEEeecCCCcEEEEEeCCc--EEEEEecc
Confidence 368999999999999999999999999887765432 2223347899999999999999888652 12211111
Q ss_pred ccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc-----ee---
Q 013578 171 EKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK-----LL--- 242 (440)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-----~~--- 242 (440)
-..+....... . . .+.+ ..+..+....=.=+....|+ .+
T Consensus 140 f~~i~E~~L~~--d-----------~------------------~~~s--k~v~VGwGrkeTqfrgs~gr~~~~~~~~~e 186 (1265)
T KOG1920|consen 140 FEPIAEKPLDA--D-----------D------------------ERKS--KFVNVGWGRKETQFRGSEGRQAARQKIEKE 186 (1265)
T ss_pred ccchhcccccc--c-----------c------------------cccc--ccceecccccceeeecchhhhccccccccc
Confidence 11100000000 0 0 0001 12333322211111111110 00
Q ss_pred ---eeeeCCCCcccEEEecCCCCeEEEE-----ecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEE
Q 013578 243 ---GNVDTNQLKNNMAAISPNGRFLAAA-----AFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQI 314 (440)
Q Consensus 243 ---~~~~~~~~~v~~~~~s~~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l 314 (440)
..... ...-+.+.|--||+++|+. ....+|++||-. +. .-..-..-.+.=.+++|-|.|..+
T Consensus 187 k~~~~~~~-~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~--------Lns~se~~~~l~~~LsWkPsgs~i 256 (1265)
T KOG1920|consen 187 KALEQIEQ-DDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA--------LNSTSEPVEGLQHSLSWKPSGSLI 256 (1265)
T ss_pred ccccchhh-ccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-ch--------hhcccCcccccccceeecCCCCeE
Confidence 10111 1223568999999999984 233789999965 22 111111112233579999999988
Q ss_pred EEEe---CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE---ec-CCEEEEEEcCCcc
Q 013578 315 ITAS---KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA---TH-GSTLQWLSVETGK 387 (440)
Q Consensus 315 ~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~---~~-~~~i~i~d~~~~~ 387 (440)
++.. .|+.|.++.-+.... ..-.++ .......+..++|+.++.+||+ .. ...|++|-+..-.
T Consensus 257 A~iq~~~sd~~IvffErNGL~h------g~f~l~-----~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 257 AAIQCKTSDSDIVFFERNGLRH------GEFVLP-----FPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred eeeeecCCCCcEEEEecCCccc------cccccC-----CcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 8764 466799987653221 000111 1122233788999999999997 33 4559999887643
No 310
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=3.1e-06 Score=71.25 Aligned_cols=248 Identities=15% Similarity=0.172 Sum_probs=141.3
Q ss_pred cccccccCcceeEEEEccCCC-EEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 84 VNTLKGHGDSVTGLCFSSDGK-CLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg~-~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
...+.+|...|..++|||..+ ++..++.+..|+|.|+++... ......+ ..+.+++|.-|..
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~-----vssy~a~-~~~wSC~wDlde~----------- 248 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV-----VSSYIAY-NQIWSCCWDLDER----------- 248 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee-----eeheecc-CCceeeeeccCCc-----------
Confidence 345678899999999999776 788999999999999987642 2222222 6777888765432
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce-
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL- 241 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~- 241 (440)
.+++.|...|.|.+||++..+-
T Consensus 249 ---------------------------------------------------------h~IYaGl~nG~VlvyD~R~~~~~ 271 (463)
T KOG1645|consen 249 ---------------------------------------------------------HVIYAGLQNGMVLVYDMRQPEGP 271 (463)
T ss_pred ---------------------------------------------------------ceeEEeccCceEEEEEccCCCch
Confidence 2788888899999999986542
Q ss_pred eeeeeC--CCCcccEEE------ecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCE
Q 013578 242 LGNVDT--NQLKNNMAA------ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQ 313 (440)
Q Consensus 242 ~~~~~~--~~~~v~~~~------~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 313 (440)
+..+.. ...+|..++ ..+.|.+|+....+ +..|.+....+ .+.++..+. ..+...++++++..+.
T Consensus 272 ~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~----~~p~vlele-~pG~cismqy~~~snh 344 (463)
T KOG1645|consen 272 LMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAE----CLPCVLELE-PPGICISMQYHGVSNH 344 (463)
T ss_pred HhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhcccc----CCCcccccC-CCcceeeeeecCccce
Confidence 222211 112232222 22334555554433 45666644331 112222222 2455666777665555
Q ss_pred EEEEeCC-C----------------cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-ec-
Q 013578 314 IITASKD-G----------------TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-TH- 374 (440)
Q Consensus 314 l~s~~~d-g----------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~- 374 (440)
++..-.. . .-.||..+... ......+... -..+.-.++..+++. ++
T Consensus 345 ~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~--------~Gs~~~kl~t-------~~ai~~~~~nn~iv~~gd~ 409 (463)
T KOG1645|consen 345 LLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTY--------FGSKQTKLST-------TQAIRAVEDNNYIVVVGDS 409 (463)
T ss_pred EEEEecCCCCCccceeeeeeeccccCceeeeecccc--------cCCccccccc-------ccceeccccccEEEEecCC
Confidence 4433221 0 01122221100 0000000000 011222455666665 33
Q ss_pred CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 375 GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 375 ~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
.+.+.+||..+++.++.+. -..+|.+++....+ + ..+|++-. |..++||+.++
T Consensus 410 tn~lil~D~~s~evvQ~l~--~~epv~Dicp~~~n-----~-~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 410 TNELILQDPHSFEVVQTLA--LSEPVLDICPNDTN-----G-SSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred cceeEEeccchhheeeecc--cCcceeecceeecC-----C-cchhhhee-cceEEEEecCC
Confidence 4899999999999999885 55788888766542 1 15777665 66799987654
No 311
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=7e-06 Score=75.98 Aligned_cols=203 Identities=11% Similarity=0.113 Sum_probs=132.1
Q ss_pred CCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCc-ccEEEecCCCCeEEEEecCCC-----EEEEEeEecCCCceee
Q 013578 215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLK-NNMAAISPNGRFLAAAAFTAD-----VKVWEIVYSKDGLVKA 288 (440)
Q Consensus 215 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~ 288 (440)
++.+. .++.|+.+|.|.+++-. .+.++.++.+... +..+....+.++|++.+.|+. ++||++.....+....
T Consensus 32 ~s~~~-~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~ 109 (933)
T KOG2114|consen 32 SSSTG-SVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ 109 (933)
T ss_pred cCCCc-eEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence 34444 89999999999888743 4455777776666 555555555578888777655 8999997664333111
Q ss_pred eeeeeeeec-----cccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe
Q 013578 289 VTSVMQLKG-----HKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL 363 (440)
Q Consensus 289 ~~~~~~~~~-----h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 363 (440)
....+.+.+ ...++.+++.+.+-..+|+|-.||.|..+.=.-.+ .. .. ...-......+|+.+++
T Consensus 110 c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~R---Dr--gs-----r~~~~~~~~~pITgL~~ 179 (933)
T KOG2114|consen 110 CLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILR---DR--GS-----RQDYSHRGKEPITGLAL 179 (933)
T ss_pred eeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchh---cc--cc-----ceeeeccCCCCceeeEE
Confidence 111122222 24678899999998899999999999988532111 00 00 11112233456999999
Q ss_pred CCCCCE-EEEecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 364 SSDGKI-LAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 364 s~~g~~-l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
..+++. +.+..-..|.+|.+....+.......|...++|..|++.. ..+++++ +..+.+|+.+..+
T Consensus 180 ~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t--------~qfIca~-~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 180 RSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGT--------YQFICAG-SEFLYFYDSDGRG 246 (933)
T ss_pred ecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCC--------ccEEEec-CceEEEEcCCCcc
Confidence 999986 4556678889998884333333235788899999999875 4466665 3458888876543
No 312
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.61 E-value=3e-05 Score=65.49 Aligned_cols=191 Identities=10% Similarity=0.045 Sum_probs=106.6
Q ss_pred CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceE-EEE
Q 013578 228 GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVT-WLC 306 (440)
Q Consensus 228 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~ 306 (440)
...|.|.|+..++.+.++..... ...+-...+-|.+.+.||.+.-..+.... ... ......+.....++. .-+
T Consensus 117 a~SVtVVDl~~~kvv~ei~~PGC---~~iyP~~~~~F~~lC~DGsl~~v~Ld~~G--k~~-~~~t~~F~~~~dp~f~~~~ 190 (342)
T PF06433_consen 117 ATSVTVVDLAAKKVVGEIDTPGC---WLIYPSGNRGFSMLCGDGSLLTVTLDADG--KEA-QKSTKVFDPDDDPLFEHPA 190 (342)
T ss_dssp SEEEEEEETTTTEEEEEEEGTSE---EEEEEEETTEEEEEETTSCEEEEEETSTS--SEE-EEEEEESSTTTS-B-S--E
T ss_pred CCeEEEEECCCCceeeeecCCCE---EEEEecCCCceEEEecCCceEEEEECCCC--CEe-EeeccccCCCCcccccccc
Confidence 34589999999998888875432 12221123457788889999888876433 211 111123333333332 334
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCccccccCCCCcccccccc---ccCCCCCeeeeeeEEeCCCCCEEEE----ecC----
Q 013578 307 FAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIP---LLDSNGATLQYDRLSLSSDGKILAA----THG---- 375 (440)
Q Consensus 307 ~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~~----~~~---- 375 (440)
+...+..++-.+.+|.|+--|+...... ....+... .....=......-+++++....|.+ +.+
T Consensus 191 ~~~~~~~~~F~Sy~G~v~~~dlsg~~~~-----~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHK 265 (342)
T PF06433_consen 191 YSRDGGRLYFVSYEGNVYSADLSGDSAK-----FGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHK 265 (342)
T ss_dssp EETTTTEEEEEBTTSEEEEEEETTSSEE-----EEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TT
T ss_pred eECCCCeEEEEecCCEEEEEeccCCccc-----ccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCcc
Confidence 4445555665778888888887643211 11111100 0000111222345788765543333 211
Q ss_pred ---CEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEE-eeCCCeEEEEeCCCCC
Q 013578 376 ---STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLAT-SSVDKKVKLWLAPSLE 438 (440)
Q Consensus 376 ---~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t-~~~Dg~i~vw~~~~~~ 438 (440)
..|.+||+.+++.+.++.- ...+.+|..+.+.. .+|++ ...++.+.+||..+++
T Consensus 266 dpgteVWv~D~~t~krv~Ri~l--~~~~~Si~Vsqd~~-------P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 266 DPGTEVWVYDLKTHKRVARIPL--EHPIDSIAVSQDDK-------PLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp S-EEEEEEEETTTTEEEEEEEE--EEEESEEEEESSSS--------EEEEEETTTTEEEEEETTT--
T ss_pred CCceEEEEEECCCCeEEEEEeC--CCccceEEEccCCC-------cEEEEEcCCCCeEEEEeCcCCc
Confidence 3688899999999998853 34588999998752 45654 4568999999999886
No 313
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.61 E-value=2.4e-05 Score=75.39 Aligned_cols=191 Identities=18% Similarity=0.184 Sum_probs=115.4
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEec----CC--------Cceee
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYS----KD--------GLVKA 288 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~----~~--------~~~~~ 288 (440)
.++.+..+|.|.+-|.++.... ....-...|.+++|+||+++++..+..+++.+.+-... +. +....
T Consensus 82 ~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~ 160 (1265)
T KOG1920|consen 82 SICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVN 160 (1265)
T ss_pred eEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccce
Confidence 4555556667777777765432 22223557899999999999999998888877553110 00 00000
Q ss_pred ---eeeeeeeec---------------------cccceEEEEEcCCCCEEEEEe----CC-CcEEEEecCccccccCCCC
Q 013578 289 ---VTSVMQLKG---------------------HKSAVTWLCFAPNSEQIITAS----KD-GTLRVWNINVRYHLDEDPK 339 (440)
Q Consensus 289 ---~~~~~~~~~---------------------h~~~v~~~~~~p~~~~l~s~~----~d-g~i~iwd~~~~~~~~~~~~ 339 (440)
.+....+.| -.+.=++|.|--||.++|+.. .+ ..|++||-+ +... ...
T Consensus 161 VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Ln-s~s- 237 (1265)
T KOG1920|consen 161 VGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALN-STS- 237 (1265)
T ss_pred ecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhh-ccc-
Confidence 000011111 111224689999999998743 23 789999987 2111 000
Q ss_pred ccccccccccCCCCCeeeeeeEEeCCCCCEEEE----ecCCEEEEEEcCCc---cchhhhhccccCCeEEEEecCCCCCC
Q 013578 340 TLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA----THGSTLQWLSVETG---KVLDTAEKAHEGEITCMAWAPKTIPM 412 (440)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~----~~~~~i~i~d~~~~---~~~~~~~~~h~~~v~~v~~~~~~~~~ 412 (440)
......-.+++|-|.|.++|+ ++++.|.+|....- +..... ......|..++|+.++
T Consensus 238 ------------e~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~-p~de~~ve~L~Wns~s--- 301 (1265)
T KOG1920|consen 238 ------------EPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPF-PLDEKEVEELAWNSNS--- 301 (1265)
T ss_pred ------------CcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCC-cccccchheeeecCCC---
Confidence 001111236999999999998 34678999986432 222222 1233459999999998
Q ss_pred CCCcceEEEE---eeCCCeEEEEeCCC
Q 013578 413 GNQQVSVLAT---SSVDKKVKLWLAPS 436 (440)
Q Consensus 413 ~~~~~~~l~t---~~~Dg~i~vw~~~~ 436 (440)
..|+. ......|++|.+.+
T Consensus 302 -----diLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 302 -----DILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred -----CceeeeecccccceEEEEEecC
Confidence 78887 55566699998765
No 314
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.55 E-value=2.8e-06 Score=69.07 Aligned_cols=172 Identities=12% Similarity=0.199 Sum_probs=104.4
Q ss_pred cccEEEecCCC--CeEEEEecCCCEEEEEeEecC-----------------CCce-----------------eeeeeee-
Q 013578 251 KNNMAAISPNG--RFLAAAAFTADVKVWEIVYSK-----------------DGLV-----------------KAVTSVM- 293 (440)
Q Consensus 251 ~v~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~-----------------~~~~-----------------~~~~~~~- 293 (440)
.|..+.|-.++ ..++..+.|.+|++|.+.... .+.. ....+..
T Consensus 87 Kin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rv 166 (460)
T COG5170 87 KINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRV 166 (460)
T ss_pred HhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecccee
Confidence 45667665543 456677789999999985441 0000 0001111
Q ss_pred eeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC--EEE
Q 013578 294 QLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK--ILA 371 (440)
Q Consensus 294 ~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~ 371 (440)
.-..|.--|.++.|..|...++++ .|-.|.+|++.-.. .......+..+....-..-|++..|+|... ++.
T Consensus 167 yaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D------~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmY 239 (460)
T COG5170 167 YANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIID------GSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMY 239 (460)
T ss_pred ccccceeEeeeeeecCchheeeec-cceeeeeccccccC------CceEEEeccCccHHHHHHHHhhcccCHhHcceEEE
Confidence 124677789999999988877766 46789999987432 122222211111111123366788888643 555
Q ss_pred EecCCEEEEEEcCCccc------hhhh---------hccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 372 ATHGSTLQWLSVETGKV------LDTA---------EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 372 ~~~~~~i~i~d~~~~~~------~~~~---------~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
+++.|.|++-|++...+ +... ..+-...|.++.|+++| +++++-+ =-+|+|||++.
T Consensus 240 SsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng--------ryIlsRd-yltvkiwDvnm 310 (460)
T COG5170 240 SSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG--------RYILSRD-YLTVKIWDVNM 310 (460)
T ss_pred ecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC--------cEEEEec-cceEEEEeccc
Confidence 67789999999873321 1111 01223578899999998 7777654 46899999976
Q ss_pred CC
Q 013578 437 LE 438 (440)
Q Consensus 437 ~~ 438 (440)
.+
T Consensus 311 ~k 312 (460)
T COG5170 311 AK 312 (460)
T ss_pred cc
Confidence 54
No 315
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=1.3e-05 Score=74.21 Aligned_cols=138 Identities=11% Similarity=0.052 Sum_probs=92.0
Q ss_pred CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN 327 (440)
Q Consensus 248 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd 327 (440)
...++.+++++.+-+.+|+|-.+|.|..+.-+...+... ...-......+|+++++..++..++-...-..|.+|.
T Consensus 124 ~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs----r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~ 199 (933)
T KOG2114|consen 124 NPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS----RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYS 199 (933)
T ss_pred CCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc----ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEE
Confidence 356788999999999999999999999886432221110 1122223467899999998887632222334799999
Q ss_pred cCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeEE
Q 013578 328 INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITC 402 (440)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~ 402 (440)
+..+.. .......+...+.|.++++....++++.+..+.+|+......-..+..+|......
T Consensus 200 l~gr~p-------------~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~~g~kk~~~~ 261 (933)
T KOG2114|consen 200 LSGRTP-------------SLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFEVGEKKEMLV 261 (933)
T ss_pred ecCCCc-------------ceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeecCCCeEEEEE
Confidence 884320 01112344556778888877777888889999999998776666664466544433
No 316
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=5.9e-06 Score=75.88 Aligned_cols=173 Identities=12% Similarity=0.141 Sum_probs=119.3
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~ 300 (440)
+++-|+-+|.|++++.. +.. .+...|... ..+|.++++++.||+|.|..+-+.+ ...++. ...
T Consensus 51 ~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~--------~~~~~d-f~r 113 (846)
T KOG2066|consen 51 FFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDD--------EITQYD-FKR 113 (846)
T ss_pred eeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCc--------cceeEe-cCC
Confidence 89999999999999865 433 333233322 6689999999999999999886654 222222 457
Q ss_pred ceEEEEEcCC-----CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecC
Q 013578 301 AVTWLCFAPN-----SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHG 375 (440)
Q Consensus 301 ~v~~~~~~p~-----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 375 (440)
++.+++++|+ .+++++|+.-| +.++.-+-.... .. . ........|.++.| .|.++|-++|
T Consensus 114 piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk-------~~----v-~l~~~eG~I~~i~W--~g~lIAWand 178 (846)
T KOG2066|consen 114 PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK-------DS----V-VLSEGEGPIHSIKW--RGNLIAWAND 178 (846)
T ss_pred cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc-------cc----e-eeecCccceEEEEe--cCcEEEEecC
Confidence 8999999997 56799999888 777654311100 00 0 11233455777777 5789999999
Q ss_pred CEEEEEEcCCccchhhhhccccC-----CeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 376 STLQWLSVETGKVLDTAEKAHEG-----EITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 376 ~~i~i~d~~~~~~~~~~~~~h~~-----~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
-.|++||+.+++.+..++..+.. --..+.|.++. .|+.|= --+|+|..+.
T Consensus 179 ~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~---------~LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 179 DGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED---------RLVIGW-GDSVKICSIK 233 (846)
T ss_pred CCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCC---------eEEEec-CCeEEEEEEe
Confidence 99999999999988887655532 23467888874 455543 4458888776
No 317
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.52 E-value=0.00014 Score=65.87 Aligned_cols=185 Identities=8% Similarity=0.007 Sum_probs=104.7
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcc-----cEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeee-eee
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKN-----NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTS-VMQ 294 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~ 294 (440)
.++.+..++.|..+|.++|+.+..+....... ..... .+..++.++.+|.+..+|..+++. .+.. ...
T Consensus 162 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~----~W~~~~~~ 235 (394)
T PRK11138 162 LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQL----IWQQRISQ 235 (394)
T ss_pred EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChh----hheecccc
Confidence 56667778899999999999887765431111 11111 234567778889998888766541 1100 000
Q ss_pred ee-ccc-cceEEEEEcC--CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEE
Q 013578 295 LK-GHK-SAVTWLCFAP--NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKIL 370 (440)
Q Consensus 295 ~~-~h~-~~v~~~~~~p--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 370 (440)
-. .+. .....+..+| .+..++.++.+|.+..+|..+++.+...... . ...+.. .+++++
T Consensus 236 ~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~------------~----~~~~~~-~~~~vy 298 (394)
T PRK11138 236 PTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG------------S----VNDFAV-DGGRIY 298 (394)
T ss_pred CCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC------------C----ccCcEE-ECCEEE
Confidence 00 000 0011111122 2456777778999999999887654321100 0 001111 245555
Q ss_pred EEecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 371 AATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 371 ~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
+...++.++.+|..+|+.+............+.... + .+|+.++.||.+.+.|..+++
T Consensus 299 ~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~-~---------g~l~v~~~~G~l~~ld~~tG~ 356 (394)
T PRK11138 299 LVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY-N---------GYLVVGDSEGYLHWINREDGR 356 (394)
T ss_pred EEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE-C---------CEEEEEeCCCEEEEEECCCCC
Confidence 566689999999999987654321111112222222 2 367888999999999988875
No 318
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.49 E-value=5.6e-05 Score=69.28 Aligned_cols=187 Identities=11% Similarity=0.084 Sum_probs=114.4
Q ss_pred CCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCC----CEEEEEeEecCCCceeeee
Q 013578 215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTA----DVKVWEIVYSKDGLVKAVT 290 (440)
Q Consensus 215 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~ 290 (440)
.+||+.+..+.-..+.+.+.|.++.+...++.... ...-+.++++|+++++.+.+. ++...+.....
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d-------- 271 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD-------- 271 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCc--------
Confidence 45666444555566788899999888877776544 446789999999999887322 22222211000
Q ss_pred eeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEE
Q 013578 291 SVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKIL 370 (440)
Q Consensus 291 ~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 370 (440)
....+.-. .+ -++.++|++... .++.|.+.|.++..+- .......++.+ .....++++|||+++
T Consensus 272 ~~vvfni~--~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~--~~~v~~yIPVG--------KsPHGV~vSPDGkyl 335 (635)
T PRK02888 272 WVVVFNIA--RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANA--GSALTRYVPVP--------KNPHGVNTSPDGKYF 335 (635)
T ss_pred eEEEEchH--HH--HHhhhCCCEEEE--CCCEEEEEECCccccC--CcceEEEEECC--------CCccceEECCCCCEE
Confidence 01111000 00 133457776655 3568999998861100 00111112111 113469999999999
Q ss_pred EEec--CCEEEEEEcCCccc------------hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 371 AATH--GSTLQWLSVETGKV------------LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 371 ~~~~--~~~i~i~d~~~~~~------------~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
++++ +..+.|+|+.+.+. ..+.+ -.......+|.++| ..+.|-..|..|-.|++..
T Consensus 336 yVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve--vGlGPLHTaFDg~G--------~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 336 IANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE--LGLGPLHTAFDGRG--------NAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec--cCCCcceEEECCCC--------CEEEeEeecceeEEEehHH
Confidence 8865 78999999988663 22221 12345567888887 7888889999999999865
No 319
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.47 E-value=0.00011 Score=66.56 Aligned_cols=178 Identities=13% Similarity=0.140 Sum_probs=103.8
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCC----c---ccEEEecC--CCCeEEEEecCCCEEEEEeEecCCCceeeeee
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQL----K---NNMAAISP--NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTS 291 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~----~---v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 291 (440)
.++.++.++.+..+|..+|+.+........ . ...+..+| .+..+++++.+|.+..+|..+++ ..+
T Consensus 207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~----~~W-- 280 (394)
T PRK11138 207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ----IVW-- 280 (394)
T ss_pred EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC----EEE--
Confidence 456677788899999999887655432110 0 00111122 35567777889999999987665 111
Q ss_pred eeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE
Q 013578 292 VMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA 371 (440)
Q Consensus 292 ~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 371 (440)
... .+....+.. .+..|+.++.||.+..+|..+++.+....... .. ....... -++.+++
T Consensus 281 --~~~--~~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~---------~~----~~~sp~v-~~g~l~v 340 (394)
T PRK11138 281 --KRE--YGSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLL---------HR----LLTAPVL-YNGYLVV 340 (394)
T ss_pred --eec--CCCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccC---------CC----cccCCEE-ECCEEEE
Confidence 111 111112222 45678888889999999998775543211100 00 0111111 2555666
Q ss_pred EecCCEEEEEEcCCccchhhhhccccCCeEE-EEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 372 ATHGSTLQWLSVETGKVLDTAEKAHEGEITC-MAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 372 ~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~-v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
...+|.++.+|..+|+.+..... ....+.+ ..+. + ..|+.++.||.|..++++
T Consensus 341 ~~~~G~l~~ld~~tG~~~~~~~~-~~~~~~s~P~~~-~---------~~l~v~t~~G~l~~~~~~ 394 (394)
T PRK11138 341 GDSEGYLHWINREDGRFVAQQKV-DSSGFLSEPVVA-D---------DKLLIQARDGTVYAITRP 394 (394)
T ss_pred EeCCCEEEEEECCCCCEEEEEEc-CCCcceeCCEEE-C---------CEEEEEeCCceEEEEeCC
Confidence 66689999999999998876632 2222322 2222 3 368888999999988763
No 320
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.46 E-value=4.5e-05 Score=69.88 Aligned_cols=154 Identities=17% Similarity=0.195 Sum_probs=91.3
Q ss_pred CCCCCeEEEEeeCCceEEEEeCCC-----CceeeeeeCCCCcccEEEecCCCCeEEEEec-CCCEEEEEeEecCCC---c
Q 013578 215 TADGSTIIASCSEGTDISIWHGKT-----GKLLGNVDTNQLKNNMAAISPNGRFLAAAAF-TADVKVWEIVYSKDG---L 285 (440)
Q Consensus 215 ~~~~~~~l~s~~~d~~i~vwd~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~---~ 285 (440)
.++|+..++ .++.|.+.|..+ .+.+..+.... ....+.++|||+++++++. +.++.|+|+...+.. .
T Consensus 285 vkdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yIPVGK-sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 285 VKAGKFKTI---GGSKVPVVDGRKAANAGSALTRYVPVPK-NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhCCCEEEE---CCCEEEEEECCccccCCcceEEEEECCC-CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 567774444 356799999998 45666666543 4678999999999887765 889999998764420 0
Q ss_pred eeee-eeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccc-cccccCCCCCeeeeeeEEe
Q 013578 286 VKAV-TSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVL-PIPLLDSNGATLQYDRLSL 363 (440)
Q Consensus 286 ~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~ 363 (440)
.... ....+..- ...-...+|.++|....|...|..|..||+...-....-......+ .+..+-..+|...-..-.-
T Consensus 361 ~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~ 439 (635)
T PRK02888 361 IKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETK 439 (635)
T ss_pred CCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcC
Confidence 0000 01222222 2234567899999888888899999999998631110000000111 1223333344332223334
Q ss_pred CCCCCEEEEe
Q 013578 364 SSDGKILAAT 373 (440)
Q Consensus 364 s~~g~~l~~~ 373 (440)
.|||+||++.
T Consensus 440 ~~dgk~l~~~ 449 (635)
T PRK02888 440 EADGKWLVSL 449 (635)
T ss_pred CCCCCEEEEc
Confidence 6788888774
No 321
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.44 E-value=1.3e-05 Score=71.49 Aligned_cols=74 Identities=14% Similarity=0.209 Sum_probs=61.1
Q ss_pred CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN 327 (440)
Q Consensus 248 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd 327 (440)
....+.|++++|+...|+.|+.||.|.+||...+. ..+....-.++.++|||+|..+++|+..|.+.+||
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~----------t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV----------TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFD 327 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCe----------eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEE
Confidence 35678999999999999999999999999975442 12222345578999999999999999999999999
Q ss_pred cCcc
Q 013578 328 INVR 331 (440)
Q Consensus 328 ~~~~ 331 (440)
+.-.
T Consensus 328 ~ALs 331 (545)
T PF11768_consen 328 MALS 331 (545)
T ss_pred eecC
Confidence 8743
No 322
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.37 E-value=0.00016 Score=60.83 Aligned_cols=186 Identities=16% Similarity=0.114 Sum_probs=109.9
Q ss_pred CCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEec-CCCCeEEEEecCCCEEEEEeEecCCCceeeeeeee
Q 013578 215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAIS-PNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM 293 (440)
Q Consensus 215 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 293 (440)
.+....++++....+.|+.|+..+++... +.... ...+++. ++ ..|+++.. +.+.++|...++ ...+.
T Consensus 8 d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~-~~~~~~d~~~g~------~~~~~ 76 (246)
T PF08450_consen 8 DPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADS-GGIAVVDPDTGK------VTVLA 76 (246)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEET-TCEEEEETTTTE------EEEEE
T ss_pred ECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEc-CceEEEecCCCc------EEEEe
Confidence 34333377777788999999998775532 33322 5667777 56 45555554 455666764432 11222
Q ss_pred eee--c-cccceEEEEEcCCCCEEEEEeCC--------CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEE
Q 013578 294 QLK--G-HKSAVTWLCFAPNSEQIITASKD--------GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS 362 (440)
Q Consensus 294 ~~~--~-h~~~v~~~~~~p~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 362 (440)
... . .....+.+++.|+|++.++.... |.|..++.. +.. .... ......+.++
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~--------~~~~-------~~~~~pNGi~ 140 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV--------TVVA-------DGLGFPNGIA 140 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE--------EEEE-------EEESSEEEEE
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE--------EEEe-------cCcccccceE
Confidence 221 1 34567899999999977776543 446666655 211 0000 0011245799
Q ss_pred eCCCCCEEEEec--CCEEEEEEcCCccc-h---hhhhcccc--CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578 363 LSSDGKILAATH--GSTLQWLSVETGKV-L---DTAEKAHE--GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA 434 (440)
Q Consensus 363 ~s~~g~~l~~~~--~~~i~i~d~~~~~~-~---~~~~~~h~--~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~ 434 (440)
|+|+++.|..++ .+.|..|+...... + ..+..... +..-.+++..++ ++.++.-..+.|.+++.
T Consensus 141 ~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G--------~l~va~~~~~~I~~~~p 212 (246)
T PF08450_consen 141 FSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG--------NLWVADWGGGRIVVFDP 212 (246)
T ss_dssp EETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS---------EEEEEETTTEEEEEET
T ss_pred ECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC--------CEEEEEcCCCEEEEECC
Confidence 999999776543 68899998853221 1 11111112 347889999998 77777777889999987
Q ss_pred C
Q 013578 435 P 435 (440)
Q Consensus 435 ~ 435 (440)
+
T Consensus 213 ~ 213 (246)
T PF08450_consen 213 D 213 (246)
T ss_dssp T
T ss_pred C
Confidence 6
No 323
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.27 E-value=2.2e-05 Score=73.33 Aligned_cols=141 Identities=12% Similarity=0.165 Sum_probs=101.4
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec---------CCCEEEEEeEecCCCceeeeee
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF---------TADVKVWEIVYSKDGLVKAVTS 291 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~ 291 (440)
.+.+|...|+|.+-|..+.+.++++..|.+.+.. |+-.|+.|++++. |..|+|||++.-+ .
T Consensus 189 ~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD--fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr--------a 258 (1118)
T KOG1275|consen 189 NLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD--FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR--------A 258 (1118)
T ss_pred EEEeecccceEEeecCCcCceeeeeeccccceee--eeccCCeEEEeecccccccccccchhhhhhhhhhh--------c
Confidence 8899999999999999999999999999988764 5667999998874 4568999997654 2
Q ss_pred eeeeeccccceEEEEEcCC-CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEE
Q 013578 292 VMQLKGHKSAVTWLCFAPN-SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKIL 370 (440)
Q Consensus 292 ~~~~~~h~~~v~~~~~~p~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 370 (440)
+..+.-+.++ .-+.|+|. ...++.++..|...+-|..+..... . ...........+..+.+|++|..|
T Consensus 259 l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~---~-------~~~~v~p~~s~i~~fDiSsn~~al 327 (1118)
T KOG1275|consen 259 LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP---A-------GVKMVNPNGSGISAFDISSNGDAL 327 (1118)
T ss_pred cCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCc---c-------ceeEEccCCCcceeEEecCCCceE
Confidence 3333333333 44677884 3468888889999998844321110 0 011111112237789999999999
Q ss_pred EEec-CCEEEEEE
Q 013578 371 AATH-GSTLQWLS 382 (440)
Q Consensus 371 ~~~~-~~~i~i~d 382 (440)
|.|+ +|.|.+|.
T Consensus 328 afgd~~g~v~~wa 340 (1118)
T KOG1275|consen 328 AFGDHEGHVNLWA 340 (1118)
T ss_pred EEecccCcEeeec
Confidence 9997 89999997
No 324
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.25 E-value=0.0001 Score=67.09 Aligned_cols=60 Identities=13% Similarity=0.112 Sum_probs=45.4
Q ss_pred EEEEeeCCceEEEEeCCCCceee-----ee-eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEe
Q 013578 221 IIASCSEGTDISIWHGKTGKLLG-----NV-DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVY 280 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~-----~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 280 (440)
+++.|+..|.|.++.+..+.+-. .. ..|...|++++|++++..+++|...|+|..-.+..
T Consensus 90 lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 90 LVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 66777777878887766532211 11 13677899999999999999999999999888765
No 325
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.24 E-value=0.0035 Score=56.58 Aligned_cols=96 Identities=16% Similarity=0.251 Sum_probs=69.7
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-C
Q 013578 297 GHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-G 375 (440)
Q Consensus 297 ~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~ 375 (440)
...+.|.+++++|+...|+.|+.||.|.+||...+.... .......+.++|+|+|.++++|+ .
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~----------------~ka~~~P~~iaWHp~gai~~V~s~q 320 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL----------------AKAEFIPTLIAWHPDGAIFVVGSEQ 320 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee----------------eeecccceEEEEcCCCcEEEEEcCC
Confidence 467889999999999999999999999999987542110 01122356799999999999987 5
Q ss_pred CEEEEEEcCCccchhhhh---------------ccccCCeEEEEecCC
Q 013578 376 STLQWLSVETGKVLDTAE---------------KAHEGEITCMAWAPK 408 (440)
Q Consensus 376 ~~i~i~d~~~~~~~~~~~---------------~~h~~~v~~v~~~~~ 408 (440)
|.+.+||+.-......+. ..+...+..+.|.+.
T Consensus 321 GelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~ 368 (545)
T PF11768_consen 321 GELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPA 368 (545)
T ss_pred ceEEEEEeecCccceeeccccCCCccEEeeehhccCcchhheeEeccC
Confidence 999999986443211110 134556778889854
No 326
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.21 E-value=0.00068 Score=55.90 Aligned_cols=127 Identities=13% Similarity=0.073 Sum_probs=63.5
Q ss_pred CCcccEEEecCCCCeEEEEecCCCEEEEEeEecC---CCceeeeeeeeeeeccccceEEEEEcCCC-CEEEEEeCCCcEE
Q 013578 249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSK---DGLVKAVTSVMQLKGHKSAVTWLCFAPNS-EQIITASKDGTLR 324 (440)
Q Consensus 249 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~~~dg~i~ 324 (440)
+..+-.++|++.++.|+++-+..-..+|.++... ...................+.+++++|.. .+++....+..|.
T Consensus 117 N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~ 196 (248)
T PF06977_consen 117 NKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLL 196 (248)
T ss_dssp SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEE
T ss_pred CcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEE
Confidence 4457789999998888888887778888886511 10000000011111233457889999964 4556666777888
Q ss_pred EEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEE
Q 013578 325 VWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWL 381 (440)
Q Consensus 325 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~ 381 (440)
.+|... ..+.. ..+..........-.+--.++|.++|.+.+++.-+..++|
T Consensus 197 ~~d~~G-~~~~~-----~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 197 ELDRQG-RVVSS-----LSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp EE-TT---EEEE-----EE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred EECCCC-CEEEE-----EEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 888542 21110 0000000000111122346999999998888887777665
No 327
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.21 E-value=0.00054 Score=57.30 Aligned_cols=143 Identities=20% Similarity=0.202 Sum_probs=83.3
Q ss_pred EEEEeeCCceEEEEeCCCCceeeee-eCCCC---cccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNV-DTNQL---KNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK 296 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~---~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 296 (440)
.++.++.++.|+.+|..+|+.+... ..... ..........++.++++..++.|..+|+.+++ .+....
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~--------~~w~~~ 149 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGK--------LLWKYP 149 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTE--------EEEEEE
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCc--------EEEEee
Confidence 4555567778999999999998774 32211 11222333348888899889999999987665 222232
Q ss_pred cccc----------ceEEEEEcCCCCEEEEEeCCCc-EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC
Q 013578 297 GHKS----------AVTWLCFAPNSEQIITASKDGT-LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS 365 (440)
Q Consensus 297 ~h~~----------~v~~~~~~p~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 365 (440)
.... .+.+-....++ .++.++.++. +.+ |+.++..+.... . .. +..+ ...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~----------~~----~~~~-~~~ 210 (238)
T PF13360_consen 150 VGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--I----------SG----IYSL-PSV 210 (238)
T ss_dssp SSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--S----------S-----ECEC-EEC
T ss_pred cCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--C----------CC----ccCC-cee
Confidence 2221 11222222244 6777777775 555 998775321100 0 00 1111 335
Q ss_pred CCCEEEEe-cCCEEEEEEcCCccchh
Q 013578 366 DGKILAAT-HGSTLQWLSVETGKVLD 390 (440)
Q Consensus 366 ~g~~l~~~-~~~~i~i~d~~~~~~~~ 390 (440)
++..|+++ .++.|..||.++|+.+.
T Consensus 211 ~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 211 DGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp CCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred eCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 55555554 59999999999998753
No 328
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.20 E-value=1.1e-06 Score=78.34 Aligned_cols=190 Identities=12% Similarity=0.158 Sum_probs=125.7
Q ss_pred CeEEEEeeCCceEEEEeCCCCcee--eeeeCCCCcccEEEecC-CCCeEEEEe----cCCCEEEEEeEecCCCceeeeee
Q 013578 219 STIIASCSEGTDISIWHGKTGKLL--GNVDTNQLKNNMAAISP-NGRFLAAAA----FTADVKVWEIVYSKDGLVKAVTS 291 (440)
Q Consensus 219 ~~~l~s~~~d~~i~vwd~~~~~~~--~~~~~~~~~v~~~~~s~-~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~ 291 (440)
+.+++.|..+|.|-+-..+...-. .....+....++++|++ |.++||+|- .|..+.|||+...-.....
T Consensus 70 ~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke---- 145 (783)
T KOG1008|consen 70 RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKE---- 145 (783)
T ss_pred hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcc----
Confidence 347888889999988877654322 23345667789999998 567777773 3567999999766321111
Q ss_pred eeeee-ccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC-CCCE
Q 013578 292 VMQLK-GHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS-DGKI 369 (440)
Q Consensus 292 ~~~~~-~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~ 369 (440)
...+. +......+++|..+.+++.+|.....+.++|++.... .... -....+..+..+| .+.|
T Consensus 146 ~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~--------~~~s-------vnTk~vqG~tVdp~~~nY 210 (783)
T KOG1008|consen 146 SPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD--------SVSS-------VNTKYVQGITVDPFSPNY 210 (783)
T ss_pred ccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh--------hhhh-------hhhhhcccceecCCCCCc
Confidence 11111 1334456888888888899999999999999983211 0000 0111245688888 7889
Q ss_pred EEEecCCEEEEEEc-CC-ccchhhhhccccC-----CeEEEEecCCCCCCCCCcceEEEEeeCC-CeEEEEeCCC
Q 013578 370 LAATHGSTLQWLSV-ET-GKVLDTAEKAHEG-----EITCMAWAPKTIPMGNQQVSVLATSSVD-KKVKLWLAPS 436 (440)
Q Consensus 370 l~~~~~~~i~i~d~-~~-~~~~~~~~~~h~~-----~v~~v~~~~~~~~~~~~~~~~l~t~~~D-g~i~vw~~~~ 436 (440)
++...|+.|.+||. .. ..++..+. |.. .+..++|+|... .+|++...| ++|+++++..
T Consensus 211 ~cs~~dg~iAiwD~~rnienpl~~i~--~~~N~~~~~l~~~aycPtrt-------glla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 211 FCSNSDGDIAIWDTYRNIENPLQIIL--RNENKKPKQLFALAYCPTRT-------GLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred eeccccCceeeccchhhhccHHHHHh--hCCCCcccceeeEEeccCCc-------chhhhhccCcceEEEecccc
Confidence 99988999999994 22 33444443 332 499999999742 466666664 7889988753
No 329
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.19 E-value=2.7e-06 Score=78.97 Aligned_cols=160 Identities=14% Similarity=0.131 Sum_probs=113.6
Q ss_pred ceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC
Q 013578 240 KLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK 319 (440)
Q Consensus 240 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~ 319 (440)
+..+.+..+....+|++|+-+.++|++|+..|.|++|++.++. ......+|.++|+.+.-+.+|..+++.+.
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~--------~e~s~ncH~SavT~vePs~dgs~~Ltsss 1163 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS--------MEESVNCHQSAVTLVEPSVDGSTQLTSSS 1163 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc--------ccccccccccccccccccCCcceeeeecc
Confidence 3445666777889999999999999999999999999998876 56677889999999999999988776654
Q ss_pred CC--cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccc
Q 013578 320 DG--TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAH 396 (440)
Q Consensus 320 dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h 396 (440)
-. -..+|++...... .+... .-.++.|+..-.+-+.|. .....+||++++..+.++..+-
T Consensus 1164 ~S~PlsaLW~~~s~~~~-------------~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~ 1226 (1516)
T KOG1832|consen 1164 SSSPLSALWDASSTGGP-------------RHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDT 1226 (1516)
T ss_pred ccCchHHHhccccccCc-------------ccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcc
Confidence 33 4678998742111 11111 123577877755544444 5778999999999888754222
Q ss_pred ---cCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 397 ---EGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 397 ---~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
.-.=+++.|+|+. .+++ .|| -+||++..
T Consensus 1227 ~~~~y~~n~a~FsP~D--------~LIl---ndG--vLWDvR~~ 1257 (1516)
T KOG1832|consen 1227 VTSSYSNNLAHFSPCD--------TLIL---NDG--VLWDVRIP 1257 (1516)
T ss_pred hhhhhhccccccCCCc--------ceEe---eCc--eeeeeccH
Confidence 1233778899986 4544 455 36777643
No 330
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.17 E-value=0.00014 Score=69.30 Aligned_cols=144 Identities=15% Similarity=0.130 Sum_probs=96.9
Q ss_pred EEEE-eeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCC-------CCeEEEEecCCCEEEEEeEecCCCceeeeeee
Q 013578 221 IIAS-CSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPN-------GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSV 292 (440)
Q Consensus 221 ~l~s-~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~-------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 292 (440)
+++. ......|+-.|++.|+.+..+..+... ....+.|+ ...-++|-.+..+..||.|......+ ....
T Consensus 495 mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v--~~~~ 571 (794)
T PF08553_consen 495 MILLDPNNPNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV--DSQS 571 (794)
T ss_pred eEeecCCCCCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEEEECCCceEEeccCCCCCcee--eccc
Confidence 4443 345677999999999999999887643 23344443 33456777888999999986542111 1111
Q ss_pred eeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE
Q 013578 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA 372 (440)
Q Consensus 293 ~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 372 (440)
..+ .......|++-+.+| +||.|+.+|.||+||-- +.. ......+-..+|..+..+.||+|+++
T Consensus 572 k~Y-~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~-------------AKT~lp~lG~pI~~iDvt~DGkwila 635 (794)
T PF08553_consen 572 KQY-SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GKR-------------AKTALPGLGDPIIGIDVTADGKWILA 635 (794)
T ss_pred ccc-ccCCCceEEEecCCc-eEEEEeCCCcEEeeccc-chh-------------hhhcCCCCCCCeeEEEecCCCcEEEE
Confidence 122 234557788877666 59999999999999932 111 01112233466899999999999999
Q ss_pred ecCCEEEEEEc
Q 013578 373 THGSTLQWLSV 383 (440)
Q Consensus 373 ~~~~~i~i~d~ 383 (440)
..+..|.++++
T Consensus 636 Tc~tyLlLi~t 646 (794)
T PF08553_consen 636 TCKTYLLLIDT 646 (794)
T ss_pred eecceEEEEEE
Confidence 98888888886
No 331
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.16 E-value=0.0017 Score=53.57 Aligned_cols=208 Identities=17% Similarity=0.167 Sum_probs=109.9
Q ss_pred cccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCC-CCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCc-ee
Q 013578 210 SATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN-QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGL-VK 287 (440)
Q Consensus 210 ~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~ 287 (440)
+.+.+.|+.+.++++....+.|..++. +|+.++.+... ....-.+++..++.++++--.++.+.++++....... ..
T Consensus 25 SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~ 103 (248)
T PF06977_consen 25 SGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRA 103 (248)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EE
T ss_pred cccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchh
Confidence 444557887778888888999988996 48888887644 3456778888777666655558889999885433211 11
Q ss_pred eeeeee--eeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccc-cccccCCCCCeeeeeeEEeC
Q 013578 288 AVTSVM--QLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVL-PIPLLDSNGATLQYDRLSLS 364 (440)
Q Consensus 288 ~~~~~~--~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s 364 (440)
...... ....+...+-.++|+|.+..|+.+-...-.++|.++... ........ .............+..+++.
T Consensus 104 ~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~d~S~l~~~ 179 (248)
T PF06977_consen 104 DVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP----GGFDLFVSDDQDLDDDKLFVRDLSGLSYD 179 (248)
T ss_dssp EEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-----SS--EEEE-HHHH-HT--SS---EEEEE
T ss_pred hceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc----CccceeeccccccccccceeccccceEEc
Confidence 111111 112345668999999988888777777777788776411 00000000 00011011222336788898
Q ss_pred CCC-CEEEEec-CCEEEEEEcCCccchhhh--hcc-c-----cCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEE
Q 013578 365 SDG-KILAATH-GSTLQWLSVETGKVLDTA--EKA-H-----EGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432 (440)
Q Consensus 365 ~~g-~~l~~~~-~~~i~i~d~~~~~~~~~~--~~~-h-----~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw 432 (440)
|.. .+++.++ ...|..+| .+|+.+..+ ..+ | -.....|+|.++| + |...++-+...+|
T Consensus 180 p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G--------~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 180 PRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG--------N-LYIVSEPNLFYRF 247 (248)
T ss_dssp TTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT-----------EEEEETTTEEEEE
T ss_pred CCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCC--------C-EEEEcCCceEEEe
Confidence 874 4555444 67888888 566654332 111 1 1257889999997 4 4444566666555
No 332
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.14 E-value=3.3e-05 Score=70.18 Aligned_cols=112 Identities=18% Similarity=0.190 Sum_probs=83.1
Q ss_pred CCCCeEEEEeeCCceEEEEeCCCCceeeeee-CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee
Q 013578 216 ADGSTIIASCSEGTDISIWHGKTGKLLGNVD-TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ 294 (440)
Q Consensus 216 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 294 (440)
..++ +++.|+.-|.+++|+-..++....-. +..+.+....++++..++|.|+..|.|.++-+............ ..
T Consensus 43 st~~-~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t--~~ 119 (726)
T KOG3621|consen 43 ATEE-YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT--PC 119 (726)
T ss_pred cCCc-eEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec--cc
Confidence 3444 89999999999999977665433222 23444566788999999999999999999998764422211111 11
Q ss_pred eeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q 013578 295 LKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINV 330 (440)
Q Consensus 295 ~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~ 330 (440)
-+.|...|++++|++++..|++|...|+|..-.+..
T Consensus 120 d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 120 DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 123788999999999999999999999999888875
No 333
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.10 E-value=0.0051 Score=57.29 Aligned_cols=178 Identities=15% Similarity=0.127 Sum_probs=99.9
Q ss_pred CCceEEEEeCCCCceeeeeeCCCCc--------------------c-cEEEecCCCCeEEEEecCC--------------
Q 013578 227 EGTDISIWHGKTGKLLGNVDTNQLK--------------------N-NMAAISPNGRFLAAAAFTA-------------- 271 (440)
Q Consensus 227 ~d~~i~vwd~~~~~~~~~~~~~~~~--------------------v-~~~~~s~~~~~l~~~~~dg-------------- 271 (440)
.++.+..+|..+|+.+-.+...... + ...++.+.+..+++++.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence 4678999999999887766542110 0 1245555667788887665
Q ss_pred ----CEEEEEeEecCCCceeeeeeeeeeeccc--------cceE-EEEEcCCCC---EEEEEeCCCcEEEEecCcccccc
Q 013578 272 ----DVKVWEIVYSKDGLVKAVTSVMQLKGHK--------SAVT-WLCFAPNSE---QIITASKDGTLRVWNINVRYHLD 335 (440)
Q Consensus 272 ----~i~i~d~~~~~~~~~~~~~~~~~~~~h~--------~~v~-~~~~~p~~~---~l~s~~~dg~i~iwd~~~~~~~~ 335 (440)
.|.-+|..+++ ..+... ...|. .++. .+. .-++. .++.++.+|.+...|.++++.+.
T Consensus 253 ~~~~~l~Ald~~tG~----~~W~~~--~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W 325 (488)
T cd00216 253 LYTDSIVALDADTGK----VKWFYQ--TTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLIS 325 (488)
T ss_pred CceeeEEEEcCCCCC----EEEEee--CCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEee
Confidence 57777876665 222111 11111 1111 111 01333 57788889999999999887654
Q ss_pred CCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE------------------EecCCEEEEEEcCCccchhhhhcc-c
Q 013578 336 EDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA------------------ATHGSTLQWLSVETGKVLDTAEKA-H 396 (440)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~------------------~~~~~~i~i~d~~~~~~~~~~~~~-h 396 (440)
+.... ...++.+| +.+++ ...++.+.-+|..+|+.+.+...+ +
T Consensus 326 ~~~~~-----------------~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~ 387 (488)
T cd00216 326 ARPEV-----------------EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTI 387 (488)
T ss_pred EeEee-----------------ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCcc
Confidence 32111 00122223 22111 112577888888888877665322 0
Q ss_pred c------CCe--EEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 397 E------GEI--TCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 397 ~------~~v--~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
. .+. ..+.... .+|+.++.||.++.+|..+++.
T Consensus 388 ~~~~~~g~~~~~~~~~~~g----------~~v~~g~~dG~l~ald~~tG~~ 428 (488)
T cd00216 388 RDSWNIGFPHWGGSLATAG----------NLVFAGAADGYFRAFDATTGKE 428 (488)
T ss_pred ccccccCCcccCcceEecC----------CeEEEECCCCeEEEEECCCCce
Confidence 0 111 1112221 4788888999999999998863
No 334
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.09 E-value=0.002 Score=57.41 Aligned_cols=174 Identities=12% Similarity=0.061 Sum_probs=85.6
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeC--------CCCcccEEEecC-----CC---CeEEEEecCCCEEEEEeEecCCC
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDT--------NQLKNNMAAISP-----NG---RFLAAAAFTADVKVWEIVYSKDG 284 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~--------~~~~v~~~~~s~-----~~---~~l~~~~~dg~i~i~d~~~~~~~ 284 (440)
+++.|..+|.+.|.|++....+..-.. ....++++.|+. |+ -.+++|+..|.+.+|.+.-...+
T Consensus 99 Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g 178 (395)
T PF08596_consen 99 FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNG 178 (395)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG
T ss_pred EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCC
Confidence 899999999999999987766655321 233466777752 33 47889999999999998532211
Q ss_pred ceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeC
Q 013578 285 LVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLS 364 (440)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 364 (440)
.. ..........+.++|..+. ..|..++............ .....
T Consensus 179 ~f-~v~~~~~~~~~~~~i~~I~------------------~i~~~~G~~a~At~~~~~~--------l~~g~-------- 223 (395)
T PF08596_consen 179 RF-SVQFAGATTNHDSPILSII------------------PINADTGESALATISAMQG--------LSKGI-------- 223 (395)
T ss_dssp -E-EEEEEEEE--SS----EEE------------------EEETTT--B-B-BHHHHHG--------GGGT---------
T ss_pred ce-EEEEeeccccCCCceEEEE------------------EEECCCCCcccCchhHhhc--------cccCC--------
Confidence 11 1111111112333333322 1122222110000000000 00000
Q ss_pred CCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEec-----CCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 365 SDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWA-----PKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 365 ~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~-----~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
....+++++++..++++...+.+...... ...-....+.+- ..+ ..|++-..||.|+++.++..+
T Consensus 224 ~i~g~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~--------~~Lv~l~~~G~i~i~SLP~Lk 293 (395)
T PF08596_consen 224 SIPGYVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGG--------YCLVCLFNNGSIRIYSLPSLK 293 (395)
T ss_dssp ---EEEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEE--------EEEEEEETTSEEEEEETTT--
T ss_pred CcCcEEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCc--------eEEEEEECCCcEEEEECCCch
Confidence 00125677789999999998887665543 121223334442 233 688888999999999998865
No 335
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.07 E-value=6.8e-06 Score=46.02 Aligned_cols=37 Identities=49% Similarity=0.740 Sum_probs=33.5
Q ss_pred ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEe
Q 013578 83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHK 119 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~ 119 (440)
++..+.+|...|.+++|++++.++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3566778999999999999999999999999999996
No 336
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.06 E-value=0.00067 Score=61.03 Aligned_cols=189 Identities=14% Similarity=0.164 Sum_probs=106.9
Q ss_pred CCCCceEEEccCCCeEEEEeecCCc-ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCC
Q 013578 138 GGPPTAVAFADNATSIVVATHNLSG-CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA 216 (440)
Q Consensus 138 ~~~v~~v~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (440)
...+..-+|+|+++.++........ ..+++++....... .............++|
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~------------------------~i~~~~g~~~~P~fsp 247 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP------------------------VILNFNGNNGAPAFSP 247 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc------------------------eeeccCCccCCccCCC
Confidence 3556677899999998888766555 45665555443211 1111111122344589
Q ss_pred CCCeEEEEeeCCce--EEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec-CCCEEEEEeEecCCCceeeeeeee
Q 013578 217 DGSTIIASCSEGTD--ISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF-TADVKVWEIVYSKDGLVKAVTSVM 293 (440)
Q Consensus 217 ~~~~~l~s~~~d~~--i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~ 293 (440)
||+.++++...|+. |+++|+..+.. ..+....+.-..-.|+|||+.++..+. .|.-.||-.+.... ...
T Consensus 248 DG~~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~-------~~~ 319 (425)
T COG0823 248 DGSKLAFSSSRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS-------QVT 319 (425)
T ss_pred CCCEEEEEECCCCCccEEEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC-------cee
Confidence 99988888888776 55667776653 335444444456789999999887764 45545554432221 112
Q ss_pred eeeccccceEEEEEcCCCCEEEEEeC-CCc--EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEE
Q 013578 294 QLKGHKSAVTWLCFAPNSEQIITASK-DGT--LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKIL 370 (440)
Q Consensus 294 ~~~~h~~~v~~~~~~p~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 370 (440)
.+....+.-..-.|+|||++|+..+. +|. |.+.|+.+... .+.+... .....-+|.++|+.+
T Consensus 320 riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-------~~~lt~~--------~~~e~ps~~~ng~~i 384 (425)
T COG0823 320 RLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-------IRILTST--------YLNESPSWAPNGRMI 384 (425)
T ss_pred EeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc-------EEEcccc--------ccCCCCCcCCCCceE
Confidence 22212222226779999999887764 344 44555543221 1111111 112246788888877
Q ss_pred EEe
Q 013578 371 AAT 373 (440)
Q Consensus 371 ~~~ 373 (440)
...
T Consensus 385 ~~~ 387 (425)
T COG0823 385 MFS 387 (425)
T ss_pred EEe
Confidence 754
No 337
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.04 E-value=5.6e-05 Score=70.21 Aligned_cols=94 Identities=16% Similarity=0.259 Sum_probs=72.4
Q ss_pred CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEE
Q 013578 228 GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF 307 (440)
Q Consensus 228 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 307 (440)
.|.|.||- .+|++.+.... .-.+++++|+|..-.|+.|=.-|.+.+|...... .-.....|..+|..+.|
T Consensus 40 ~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e--------~htv~~th~a~i~~l~w 109 (1416)
T KOG3617|consen 40 GGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE--------THTVVETHPAPIQGLDW 109 (1416)
T ss_pred CceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCce--------eeeeccCCCCCceeEEe
Confidence 45677763 55665444332 2235779999999999999999999999875543 23334569999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCcc
Q 013578 308 APNSEQIITASKDGTLRVWNINVR 331 (440)
Q Consensus 308 ~p~~~~l~s~~~dg~i~iwd~~~~ 331 (440)
||+|..|+++..-|.|.+|.....
T Consensus 110 S~~G~~l~t~d~~g~v~lwr~d~~ 133 (1416)
T KOG3617|consen 110 SHDGTVLMTLDNPGSVHLWRYDVI 133 (1416)
T ss_pred cCCCCeEEEcCCCceeEEEEeeec
Confidence 999999999999999999988743
No 338
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.02 E-value=0.0022 Score=60.37 Aligned_cols=172 Identities=13% Similarity=0.086 Sum_probs=102.3
Q ss_pred ccCcceeEEEEccCCCEEEEee------CCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 89 GHGDSVTGLCFSSDGKCLATAC------ADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 89 ~H~~~V~~l~~s~dg~~l~t~s------~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
+....+...+++|||+.+|..- .|+.-.||-...+... ... ..+ .....-.|+|+|+.+.+......
T Consensus 347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~l---t~g--~~~t~PsWspDG~~lw~v~dg~~- 419 (591)
T PRK13616 347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQV---LEG--HSLTRPSWSLDADAVWVVVDGNT- 419 (591)
T ss_pred ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eee---ecC--CCCCCceECCCCCceEEEecCcc-
Confidence 3334688999999999887665 3555566654432221 111 111 34778899999988777642200
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL 242 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 242 (440)
.. ++......+.+.+.++..++..
T Consensus 420 -~~-------------------------------------------------------~v~~~~~~gql~~~~vd~ge~~ 443 (591)
T PRK13616 420 -VV-------------------------------------------------------RVIRDPATGQLARTPVDASAVA 443 (591)
T ss_pred -eE-------------------------------------------------------EEeccCCCceEEEEeccCchhh
Confidence 00 2222223456776677666553
Q ss_pred eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec-cccceEEEEEcCCCCEEEEEeCCC
Q 013578 243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG-HKSAVTWLCFAPNSEQIITASKDG 321 (440)
Q Consensus 243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~~~dg 321 (440)
. .....|..+.|||||..++... +|+|++--+.....+. ........+.. -...+.++.|.+++.++ .+..++
T Consensus 444 ~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~ 517 (591)
T PRK13616 444 S---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDP 517 (591)
T ss_pred h---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeecccCCccccceEecCCEEE-EEecCC
Confidence 3 2345699999999999998876 5788776555544443 22222222322 33446889999988854 555555
Q ss_pred cEEEEecC
Q 013578 322 TLRVWNIN 329 (440)
Q Consensus 322 ~i~iwd~~ 329 (440)
...+|.+.
T Consensus 518 ~~~v~~v~ 525 (591)
T PRK13616 518 EHPVWYVN 525 (591)
T ss_pred CCceEEEe
Confidence 55566554
No 339
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.01 E-value=3e-06 Score=75.72 Aligned_cols=101 Identities=13% Similarity=0.289 Sum_probs=62.6
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEe-EecCCCceeeeeeeeeee--
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEI-VYSKDGLVKAVTSVMQLK-- 296 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~~~~-- 296 (440)
++.+|.....+.++|++.. +..........+..+.++| .++++++-. ||.|-+||. +.-+. ++..+.
T Consensus 168 lvlaGm~sr~~~ifdlRqs-~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnien-------pl~~i~~~ 238 (783)
T KOG1008|consen 168 LVLAGMTSRSVHIFDLRQS-LDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIEN-------PLQIILRN 238 (783)
T ss_pred hhhcccccchhhhhhhhhh-hhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhcc-------HHHHHhhC
Confidence 6777777778999998732 1111122233566778888 777876665 999999993 22210 111111
Q ss_pred --ccccceEEEEEcCCCC-EEEEEeC-CCcEEEEecCc
Q 013578 297 --GHKSAVTWLCFAPNSE-QIITASK-DGTLRVWNINV 330 (440)
Q Consensus 297 --~h~~~v~~~~~~p~~~-~l~s~~~-dg~i~iwd~~~ 330 (440)
.....+..++|.|... .+++... .++|+++|+..
T Consensus 239 ~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 239 ENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 1123489999999543 4555554 56899999863
No 340
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.0048 Score=55.38 Aligned_cols=198 Identities=14% Similarity=0.179 Sum_probs=128.2
Q ss_pred cccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec---CCCEEEEEeEecCCCce
Q 013578 210 SATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF---TADVKVWEIVYSKDGLV 286 (440)
Q Consensus 210 ~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~~~ 286 (440)
.....++.+....+....+..|.+.|..+.+......... ....++++++++.++++.. ++.+.+.|-...+
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~---- 151 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK---- 151 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe----
Confidence 3444567777677777778889999988877777765544 5678999999988888876 5667777754443
Q ss_pred eeeeeeeeeeccccceEEEEEcCCCCEEEEEe-CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC
Q 013578 287 KAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS-KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS 365 (440)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 365 (440)
.......-..+ ..++++|+|..++... .++.|.+.|.+...... ...... .... ..-..+.+++
T Consensus 152 ----~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~--~~~~~~----~~~~----~~P~~i~v~~ 216 (381)
T COG3391 152 ----VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR--GSVGSL----VGVG----TGPAGIAVDP 216 (381)
T ss_pred ----EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec--cccccc----cccC----CCCceEEECC
Confidence 22222222234 8899999999766554 78899999977543321 000000 0000 1123589999
Q ss_pred CCCEEEEec--C--CEEEEEEcCCccchhh-hhccccCCeEEEEecCCCCCCCCCcceEEEEe-eCCCeEEEEeCCC
Q 013578 366 DGKILAATH--G--STLQWLSVETGKVLDT-AEKAHEGEITCMAWAPKTIPMGNQQVSVLATS-SVDKKVKLWLAPS 436 (440)
Q Consensus 366 ~g~~l~~~~--~--~~i~i~d~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~-~~Dg~i~vw~~~~ 436 (440)
+|.++.+.. + +.+...|..++..... ...+.. ....+..+|++ ..+... +..+.+.+-|..+
T Consensus 217 ~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g--------~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 217 DGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAG--------KAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred CCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCC--------CEEEEEecCCCeEEEEeCCC
Confidence 999666543 2 5899999998887665 211222 56778899987 555555 3346677766654
No 341
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.97 E-value=0.0006 Score=61.35 Aligned_cols=188 Identities=16% Similarity=0.183 Sum_probs=111.9
Q ss_pred CcceeEEEEccCCCEEEEee---CC-CcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEE
Q 013578 91 GDSVTGLCFSSDGKCLATAC---AD-GVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLY 166 (440)
Q Consensus 91 ~~~V~~l~~s~dg~~l~t~s---~d-g~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~ 166 (440)
...+..-+|+|++..++.-+ .. ..+.+++++++..... .. ..+.-..-+|+|||+.++.+........++
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i--~~----~~g~~~~P~fspDG~~l~f~~~rdg~~~iy 265 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI--LN----FNGNNGAPAFSPDGSKLAFSSSRDGSPDIY 265 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee--ec----cCCccCCccCCCCCCEEEEEECCCCCccEE
Confidence 44566678899988766542 22 3588888887764421 11 224455678999999999999888888888
Q ss_pred eeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCce--EEEEeCCCCceeee
Q 013578 167 MYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTD--ISIWHGKTGKLLGN 244 (440)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~--i~vwd~~~~~~~~~ 244 (440)
+.+........- .........-.++|||+.++++.+..|. |.+++.+.... ..
T Consensus 266 ~~dl~~~~~~~L------------------------t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~r 320 (425)
T COG0823 266 LMDLDGKNLPRL------------------------TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TR 320 (425)
T ss_pred EEcCCCCcceec------------------------ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eE
Confidence 888766531110 0000001123458999988888877776 55556654443 33
Q ss_pred eeCCCCcccEEEecCCCCeEEEEecC-CC--EEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe
Q 013578 245 VDTNQLKNNMAAISPNGRFLAAAAFT-AD--VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS 318 (440)
Q Consensus 245 ~~~~~~~v~~~~~s~~~~~l~~~~~d-g~--i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~ 318 (440)
+......-..-.|+|||++|+..+.. |. |.++|+..+. ....+ .+......-.|.|+++.+...+
T Consensus 321 iT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~--------~~~~l-t~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 321 LTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG--------KIRIL-TSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred eeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC--------cEEEc-cccccCCCCCcCCCCceEEEec
Confidence 33333333377899999999887753 44 4444433222 01111 1223334456777777665444
No 342
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.00013 Score=61.76 Aligned_cols=93 Identities=14% Similarity=0.130 Sum_probs=76.2
Q ss_pred EEEEeCCCCceeeeeeCCCCcccEEEecCCCC-eEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC
Q 013578 231 ISIWHGKTGKLLGNVDTNQLKNNMAAISPNGR-FLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP 309 (440)
Q Consensus 231 i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p 309 (440)
+++.+..+.+....+..+...|..++|+|..+ ++..++.+.+|.|.|+.+.. .+..+..+ ..+++++|.-
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~--------~vssy~a~-~~~wSC~wDl 245 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC--------VVSSYIAY-NQIWSCCWDL 245 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce--------eeeheecc-CCceeeeecc
Confidence 77777777776667777888899999999877 78889999999999997664 55666666 7899999987
Q ss_pred CCC-EEEEEeCCCcEEEEecCccc
Q 013578 310 NSE-QIITASKDGTLRVWNINVRY 332 (440)
Q Consensus 310 ~~~-~l~s~~~dg~i~iwd~~~~~ 332 (440)
|.. +|+.|-.+|.|.|||++...
T Consensus 246 de~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 246 DERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred CCcceeEEeccCceEEEEEccCCC
Confidence 664 67888899999999999653
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.93 E-value=0.0027 Score=57.48 Aligned_cols=228 Identities=12% Similarity=0.127 Sum_probs=102.3
Q ss_pred CCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCC
Q 013578 138 GGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTAD 217 (440)
Q Consensus 138 ~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (440)
...+..+.++|+++.+++++.. ...++...... ......+ ...++.+.
T Consensus 32 ~~~p~~ls~npngr~v~V~g~g----eY~iyt~~~~r---------------------------~k~~G~g-~~~vw~~~ 79 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDG----EYEIYTALAWR---------------------------NKAFGSG-LSFVWSSR 79 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETT----EEEEEETTTTE---------------------------EEEEEE--SEEEE-TS
T ss_pred CcCCeeEEECCCCCEEEEEcCC----EEEEEEccCCc---------------------------ccccCce-eEEEEecC
Confidence 3568999999999999996543 33333211110 0000111 11122333
Q ss_pred CCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec
Q 013578 218 GSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG 297 (440)
Q Consensus 218 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 297 (440)
+ .+++-...+.|.++.--+.+....+... ..+..+.. |.+|+..+.+ .|.+||+...+ .+..+..
T Consensus 80 n--~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~--------~i~~i~v 144 (443)
T PF04053_consen 80 N--RYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGK--------LIRRIDV 144 (443)
T ss_dssp S--EEEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT----------EEEEESS
T ss_pred c--cEEEEECCCeEEEEEcCccccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcc--------eeeEEec
Confidence 3 3555555777888632223332333332 12333332 8888777644 89999996654 5555542
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccc-cccccccCCCCCeeeeeeEEeCCCCCEEEEecCC
Q 013578 298 HKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLK-VLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS 376 (440)
Q Consensus 298 h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 376 (440)
.+|..+.|+++|.+++..+.+ .+.|++.+............. .+. ....-...|.+..|..+ -++.+...
T Consensus 145 --~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~----~~~E~~~~IkSg~W~~d-~fiYtT~~- 215 (443)
T PF04053_consen 145 --SAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFE----LIHEISERIKSGCWVED-CFIYTTSN- 215 (443)
T ss_dssp ---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEE----EEEEE-S--SEEEEETT-EEEEE-TT-
T ss_pred --CCCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceE----EEEEecceeEEEEEEcC-EEEEEcCC-
Confidence 248999999999999988865 788877653211000000000 000 00000234667777766 33333333
Q ss_pred EEEEEEcCCccc--hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 377 TLQWLSVETGKV--LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 377 ~i~i~d~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
.++. .-.|+. +..+ +.++.=+...+.. ..+.....|+.|..+.++
T Consensus 216 ~lkY--l~~Ge~~~i~~l----d~~~yllgy~~~~--------~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 216 HLKY--LVNGETGIIAHL----DKPLYLLGYLPKE--------NRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEE--EETTEEEEEEE-----SS--EEEEEETTT--------TEEEEE-TT--EEEEE--
T ss_pred eEEE--EEcCCcceEEEc----CCceEEEEEEccC--------CEEEEEECCCCEEEEEEC
Confidence 5555 222322 2221 3356666677754 577888888888888765
No 344
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.82 E-value=0.0087 Score=48.24 Aligned_cols=111 Identities=13% Similarity=0.118 Sum_probs=77.8
Q ss_pred CCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee
Q 013578 215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ 294 (440)
Q Consensus 215 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 294 (440)
.++.+.+++.|+-.+.+.-.|..+|..+.+... ...+.+-+.- -|++++.|...|.+++.+..++. ....
T Consensus 19 ~~dskT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs--------~~w~ 88 (354)
T KOG4649|consen 19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGS--------QIWN 88 (354)
T ss_pred ecCCceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchh--------heee
Confidence 456666899999999999999999987654322 2223222221 57889999999999999998775 2333
Q ss_pred eeccccce-EEEEEcCCCCEEEEEeCCCcEEEEecCccccccC
Q 013578 295 LKGHKSAV-TWLCFAPNSEQIITASKDGTLRVWNINVRYHLDE 336 (440)
Q Consensus 295 ~~~h~~~v-~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~ 336 (440)
+... +.| ......+++..+..++.|++.+..|.++..++..
T Consensus 89 f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 89 FVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred eeeh-hhhccceEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence 3221 122 2234567899999999999999999997766543
No 345
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.82 E-value=0.024 Score=51.41 Aligned_cols=53 Identities=19% Similarity=0.264 Sum_probs=38.2
Q ss_pred eeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCC
Q 013578 357 QYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKT 409 (440)
Q Consensus 357 ~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~ 409 (440)
++..++.||+|+++|.-. +|.+.+....-.+.+..+...-......+.|+.+.
T Consensus 218 ~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 218 PIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred CeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 588999999999999754 68888887665555555433334567788887764
No 346
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.82 E-value=0.0013 Score=59.52 Aligned_cols=142 Identities=12% Similarity=0.263 Sum_probs=80.7
Q ss_pred CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 013578 247 TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVW 326 (440)
Q Consensus 247 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iw 326 (440)
........+.++|+|++++++ .||.-.||...... . ...+.-..+.|.++++ +|+-...++|.|+
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r--------~-----k~~G~g~~~vw~~~n~-yAv~~~~~~I~I~ 94 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWR--------N-----KAFGSGLSFVWSSRNR-YAVLESSSTIKIY 94 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTE--------E-----EEEEE-SEEEE-TSSE-EEEE-TTS-EEEE
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCc--------c-----cccCceeEEEEecCcc-EEEEECCCeEEEE
Confidence 334457889999999999994 57877777721100 1 1123446788988555 6777668899996
Q ss_pred -ecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEe
Q 013578 327 -NINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAW 405 (440)
Q Consensus 327 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~ 405 (440)
++.... ...+.. .. .+..+-. |.+|...+++.|.+||..+++.+.++. . .+|..|.|
T Consensus 95 kn~~~~~--------~k~i~~-----~~---~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~--v-~~vk~V~W 152 (443)
T PF04053_consen 95 KNFKNEV--------VKSIKL-----PF---SVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRID--V-SAVKYVIW 152 (443)
T ss_dssp ETTEE-T--------T----------SS----EEEEE----SSSEEEEETTEEEEE-TTT--EEEEES--S--E-EEEEE
T ss_pred EcCcccc--------ceEEcC-----Cc---ccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEe--c-CCCcEEEE
Confidence 443211 001110 00 1222222 888888888899999999999999884 2 24999999
Q ss_pred cCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578 406 APKTIPMGNQQVSVLATSSVDKKVKLWLA 434 (440)
Q Consensus 406 ~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~ 434 (440)
++++ .+++-.+.| .+.|++.
T Consensus 153 s~~g--------~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 153 SDDG--------ELVALVTKD-SIYILKY 172 (443)
T ss_dssp -TTS--------SEEEEE-S--SEEEEEE
T ss_pred ECCC--------CEEEEEeCC-eEEEEEe
Confidence 9998 788887755 5777654
No 347
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.78 E-value=8.2e-05 Score=41.33 Aligned_cols=37 Identities=38% Similarity=0.790 Sum_probs=32.7
Q ss_pred eeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578 291 SVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN 327 (440)
Q Consensus 291 ~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd 327 (440)
....+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4555667889999999999999999999999999996
No 348
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.77 E-value=0.015 Score=47.70 Aligned_cols=197 Identities=16% Similarity=0.212 Sum_probs=103.1
Q ss_pred CCCCCeEEEEeeC-----CceEEEEeCCCC-ceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEE-Ee-------Ee
Q 013578 215 TADGSTIIASCSE-----GTDISIWHGKTG-KLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVW-EI-------VY 280 (440)
Q Consensus 215 ~~~~~~~l~s~~~-----d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~-d~-------~~ 280 (440)
++||. +|+..-+ -|.|-+||.+.+ +.+.++..+......+.+.+||+.++++. |-|... |. ..
T Consensus 122 s~dG~-~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNlds 198 (366)
T COG3490 122 SPDGR-LLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDS 198 (366)
T ss_pred CCCCc-EEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhh
Confidence 56666 4433322 367889998754 45677777777778899999999998874 334433 21 11
Q ss_pred cCCCce------eeeeeeeeee--ccccceEEEEEcCCCCEEEEEeCCCc-----EEEEecCccccccCCCCcccccccc
Q 013578 281 SKDGLV------KAVTSVMQLK--GHKSAVTWLCFAPNSEQIITASKDGT-----LRVWNINVRYHLDEDPKTLKVLPIP 347 (440)
Q Consensus 281 ~~~~~~------~~~~~~~~~~--~h~~~v~~~~~~p~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~ 347 (440)
.+...+ -..-..+++. -+.-.|..++..+||+.++-+-..|. -.+=-...+ .....+..+
T Consensus 199 MePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g-------~~l~~~~~p 271 (366)
T COG3490 199 MEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKG-------EPLEFLDLP 271 (366)
T ss_pred cCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCC-------CcCcccCCC
Confidence 110000 0000111222 34456788888888875554432221 001001111 111111111
Q ss_pred ccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeC
Q 013578 348 LLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSV 425 (440)
Q Consensus 348 ~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~ 425 (440)
......-...|-+++.+.+..+++..+ ++...+||..+|..+.... -..+..++-...+ ++..+.
T Consensus 272 ee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~---l~daaGva~~~~g----------f~vssg 338 (366)
T COG3490 272 EEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAA---LPDAAGVAAAKGG----------FAVSSG 338 (366)
T ss_pred HHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccc---ccccccceeccCc----------eEEecC
Confidence 111111122355788887777777655 6788999999999876432 1223344444443 444455
Q ss_pred CCeEEEEeC
Q 013578 426 DKKVKLWLA 434 (440)
Q Consensus 426 Dg~i~vw~~ 434 (440)
+|.+..+.-
T Consensus 339 ~G~~~~~s~ 347 (366)
T COG3490 339 QGRIIFYSR 347 (366)
T ss_pred CceEEeccc
Confidence 788877644
No 349
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.74 E-value=0.0012 Score=61.89 Aligned_cols=35 Identities=29% Similarity=0.452 Sum_probs=32.4
Q ss_pred cccCcceeEEEEccCCCEEEEeeCCCcEEEEecCC
Q 013578 88 KGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDD 122 (440)
Q Consensus 88 ~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~ 122 (440)
..|..+|..+.||++|..|+|+..-|.|.+|.++.
T Consensus 98 ~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 98 ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 45899999999999999999999999999999874
No 350
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.69 E-value=0.027 Score=48.42 Aligned_cols=151 Identities=15% Similarity=0.224 Sum_probs=85.6
Q ss_pred ccEEEecCCCCeEEEEec---------CCCEEEEEeEe-cCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC-C
Q 013578 252 NNMAAISPNGRFLAAAAF---------TADVKVWEIVY-SKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK-D 320 (440)
Q Consensus 252 v~~~~~s~~~~~l~~~~~---------dg~i~i~d~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~-d 320 (440)
.+...+.|+|.+.+.... ...-.+|.+.. +. ....+..+-..-++|+||||++.|+.+.. .
T Consensus 113 ~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~--------~~~l~~~~~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 113 PNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG--------VVRLLDDDLTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred CCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC--------EEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence 455677788776655443 11124555442 21 23333344445578999999987776654 4
Q ss_pred CcEEEEecCc-cccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-C-CEEEEEEcCCccchhhhhcccc
Q 013578 321 GTLRVWNINV-RYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-G-STLQWLSVETGKVLDTAEKAHE 397 (440)
Q Consensus 321 g~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~-~~i~i~d~~~~~~~~~~~~~h~ 397 (440)
+.|.-|++.. .-... .. .. ...........-.++...+|.+.+++. + +.|.+|+.. |+++..+. -..
T Consensus 185 ~~i~r~~~d~~~g~~~--~~-~~-----~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~-lP~ 254 (307)
T COG3386 185 NRIHRYDLDPATGPIG--GR-RG-----FVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK-LPV 254 (307)
T ss_pred CeEEEEecCcccCccC--Cc-ce-----EEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE-CCC
Confidence 7788887763 11100 00 00 000001112223577788888775443 3 499999999 88888774 444
Q ss_pred CCeEEEEecCCCCCCCCCcceEEEEeeCC
Q 013578 398 GEITCMAWAPKTIPMGNQQVSVLATSSVD 426 (440)
Q Consensus 398 ~~v~~v~~~~~~~~~~~~~~~~l~t~~~D 426 (440)
..+++++|--.. .+ .+++|+...
T Consensus 255 ~~~t~~~FgG~~-----~~-~L~iTs~~~ 277 (307)
T COG3386 255 KRPTNPAFGGPD-----LN-TLYITSARS 277 (307)
T ss_pred CCCccceEeCCC-----cC-EEEEEecCC
Confidence 778899997531 11 566666554
No 351
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.66 E-value=0.0036 Score=59.06 Aligned_cols=181 Identities=19% Similarity=0.218 Sum_probs=96.1
Q ss_pred CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEe------cCCCEEEEEeEecCCCceeeeeeeeeeeccccc
Q 013578 228 GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAA------FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSA 301 (440)
Q Consensus 228 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~ 301 (440)
+|.+.-.+-..-..+....+....+...+++|+|+.++... .|+.-.||-...+.. ......+. .
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-------~~~lt~g~--~ 398 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-------AVQVLEGH--S 398 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-------ceeeecCC--C
Confidence 55555544322222222222223567889999999988776 244445554433221 11112222 3
Q ss_pred eEEEEEcCCCCEEEEEeCC-CcEEEEecCccccccCCCCcccccccc--ccCCCCCeeeeeeEEeCCCCCEEEEecCCEE
Q 013578 302 VTWLCFAPNSEQIITASKD-GTLRVWNINVRYHLDEDPKTLKVLPIP--LLDSNGATLQYDRLSLSSDGKILAATHGSTL 378 (440)
Q Consensus 302 v~~~~~~p~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i 378 (440)
.+.-.|+|+|..|++.+.. ..+++.+-.....+ ...... .... .....|..+.|||||..++.-.++.|
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql-------~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~i~~g~v 470 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQL-------ARTPVDASAVAS-RVPGPISELQLSRDGVRAAMIIGGKV 470 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceE-------EEEeccCchhhh-ccCCCcCeEEECCCCCEEEEEECCEE
Confidence 7788999999888777533 12233222111000 000000 0000 11234889999999999988767888
Q ss_pred EE---EEcCCccc-h---hhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578 379 QW---LSVETGKV-L---DTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA 434 (440)
Q Consensus 379 ~i---~d~~~~~~-~---~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~ 434 (440)
++ -....|+. + ..+...-...+.++.|..++ . |+.+..++...+|.+
T Consensus 471 ~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~--------~-L~V~~~~~~~~v~~v 524 (591)
T PRK13616 471 YLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGD--------S-LVVGRSDPEHPVWYV 524 (591)
T ss_pred EEEEEEeCCCCceeecccEEeecccCCccccceEecCC--------E-EEEEecCCCCceEEE
Confidence 77 45455541 1 11211223346889999997 5 456566655556654
No 352
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.64 E-value=0.041 Score=49.05 Aligned_cols=256 Identities=12% Similarity=0.124 Sum_probs=123.8
Q ss_pred CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCC--------------CCCCceEEEccCCCeEEEE
Q 013578 91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPP--------------GGPPTAVAFADNATSIVVA 156 (440)
Q Consensus 91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~--------------~~~v~~v~~~~~~~~l~~~ 156 (440)
...+....|||||+.+|... ++.|.+++..++... ++....... -+.-..+.|+||+++|+..
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~--~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~ 118 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET--QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL 118 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE--ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE--EeccccceeEEcCccceeccccccccccceEECCCCCEEEEE
Confidence 56799999999999999885 567999987665211 111100000 1234689999999999998
Q ss_pred eecCCcceE-EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCc--eEEE
Q 013578 157 THNLSGCSL-YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGT--DISI 233 (440)
Q Consensus 157 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~--~i~v 233 (440)
..|...... .+........ ......... +-..|...- .+.+
T Consensus 119 ~~d~~~v~~~~~~~~~~~~~-----------------------~yp~~~~~~-------------YPk~G~~np~v~l~v 162 (353)
T PF00930_consen 119 RFDEREVPEYPLPDYSPPDS-----------------------QYPEVESIR-------------YPKAGDPNPRVSLFV 162 (353)
T ss_dssp EEE-TTS-EEEEEEESSSTE-----------------------SS-EEEEEE---------------BTTS---EEEEEE
T ss_pred EECCcCCceEEeeccCCccc-----------------------cCCcccccc-------------cCCCCCcCCceEEEE
Confidence 877433222 1111111000 000000000 000111111 3677
Q ss_pred EeCCCCceee-e-e---eCCCCcccEEEecCCCCeEEEEe--cCCC---EEEEEeEecCCCceeeeeeeeeeeccccce-
Q 013578 234 WHGKTGKLLG-N-V---DTNQLKNNMAAISPNGRFLAAAA--FTAD---VKVWEIVYSKDGLVKAVTSVMQLKGHKSAV- 302 (440)
Q Consensus 234 wd~~~~~~~~-~-~---~~~~~~v~~~~~s~~~~~l~~~~--~dg~---i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v- 302 (440)
+|+.+++... . . ......+..+.|.++++.|++.- .+.+ +.++|...+.. . .+. .....++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~---~---~~~-~e~~~~Wv~ 235 (353)
T PF00930_consen 163 VDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET---R---VVL-EETSDGWVD 235 (353)
T ss_dssp EESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC---E---EEE-EEESSSSSS
T ss_pred EECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce---e---EEE-EecCCccee
Confidence 8888776532 1 1 23455678899999998444433 2322 44455533321 1 111 11122333
Q ss_pred --EEEEEc-CCCC-EEEEEeCCCcEEEEec--CccccccCCCCccccccccccCCCCCeeee-eeEEeCCCCCEEEE-ec
Q 013578 303 --TWLCFA-PNSE-QIITASKDGTLRVWNI--NVRYHLDEDPKTLKVLPIPLLDSNGATLQY-DRLSLSSDGKILAA-TH 374 (440)
Q Consensus 303 --~~~~~~-p~~~-~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~g~~l~~-~~ 374 (440)
....|. +++. +|.....||--+||-+ ..+.. +. .......| .-+.++++++.|.. +.
T Consensus 236 ~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~--------~~-------lT~G~~~V~~i~~~d~~~~~iyf~a~ 300 (353)
T PF00930_consen 236 VYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP--------RQ-------LTSGDWEVTSILGWDEDNNRIYFTAN 300 (353)
T ss_dssp SSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE--------EE-------SS-SSS-EEEEEEEECTSSEEEEEES
T ss_pred eecccccccCCCCEEEEEEEcCCCcEEEEEcccccce--------ec-------cccCceeecccceEcCCCCEEEEEec
Confidence 345554 6555 4445557776555544 33221 10 11112234 34778888775543 32
Q ss_pred -----CCEEEEEEcC-CccchhhhhccccCCeEEEEecCCC
Q 013578 375 -----GSTLQWLSVE-TGKVLDTAEKAHEGEITCMAWAPKT 409 (440)
Q Consensus 375 -----~~~i~i~d~~-~~~~~~~~~~~h~~~v~~v~~~~~~ 409 (440)
...|+..++. .++. ..+. ...+.-..+.|+|++
T Consensus 301 ~~~p~~r~lY~v~~~~~~~~-~~LT-~~~~~~~~~~~Spdg 339 (353)
T PF00930_consen 301 GDNPGERHLYRVSLDSGGEP-KCLT-CEDGDHYSASFSPDG 339 (353)
T ss_dssp SGGTTSBEEEEEETTETTEE-EESS-TTSSTTEEEEE-TTS
T ss_pred CCCCCceEEEEEEeCCCCCe-Eecc-CCCCCceEEEECCCC
Confidence 2466666777 4433 3332 122222799999998
No 353
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.044 Score=49.33 Aligned_cols=164 Identities=17% Similarity=0.212 Sum_probs=100.4
Q ss_pred CCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEE
Q 013578 227 EGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWL 305 (440)
Q Consensus 227 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 305 (440)
.++++.+.|..+++.+........+ ..++++|+|+.+++.. .++.|.+.|.....- .. ........-...-..+
T Consensus 138 ~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v---~~-~~~~~~~~~~~~P~~i 212 (381)
T COG3391 138 GNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSV---VR-GSVGSLVGVGTGPAGI 212 (381)
T ss_pred CCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcce---ec-cccccccccCCCCceE
Confidence 3677888888888887776554444 7899999999777776 688899999543320 00 0000011122334678
Q ss_pred EEcCCCCEEEEEeCC---CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEE
Q 013578 306 CFAPNSEQIITASKD---GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQW 380 (440)
Q Consensus 306 ~~~p~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i 380 (440)
.++|+|.++...... +.+...|..++....... + .+.. ....+..+|+|.++.+.. .+.+.+
T Consensus 213 ~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~--------~----~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 213 AVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL--------P----VGSG-APRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred EECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc--------c----cccC-CCCceeECCCCCEEEEEecCCCeEEE
Confidence 899999976655433 588888887654322100 0 0011 123588999999887764 588999
Q ss_pred EEcCCccchhhhhcc--ccCCeEEEEecCC
Q 013578 381 LSVETGKVLDTAEKA--HEGEITCMAWAPK 408 (440)
Q Consensus 381 ~d~~~~~~~~~~~~~--h~~~v~~v~~~~~ 408 (440)
.|..+.+.......+ -...+..+++.+.
T Consensus 280 id~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 280 IDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred EeCCCCceeeeecccccccccceeccceee
Confidence 998887766544211 1123455555544
No 354
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.61 E-value=0.033 Score=49.68 Aligned_cols=245 Identities=18% Similarity=0.164 Sum_probs=115.4
Q ss_pred ccCCCEEEEee---------CCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecc
Q 013578 100 SSDGKCLATAC---------ADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGE 170 (440)
Q Consensus 100 s~dg~~l~t~s---------~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~ 170 (440)
|||+++++... ..+.+.|||+.++..... ......+....|+|+|+.++.+... .|++.+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l------~~~~~~~~~~~~sP~g~~~~~v~~~----nly~~~~ 70 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPL------TPPPPKLQDAKWSPDGKYIAFVRDN----NLYLRDL 70 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEES------S-EETTBSEEEE-SSSTEEEEEETT----EEEEESS
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEEC------cCCccccccceeecCCCeeEEEecC----ceEEEEC
Confidence 68888877642 346788999987643211 1114678899999999998887643 4555443
Q ss_pred ccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCC-C
Q 013578 171 EKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN-Q 249 (440)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~ 249 (440)
...... .|...+..+ |. .|..-..++.. -
T Consensus 71 ~~~~~~--------------------------------------------~lT~dg~~~-i~-----nG~~dwvyeEEv~ 100 (353)
T PF00930_consen 71 ATGQET--------------------------------------------QLTTDGEPG-IY-----NGVPDWVYEEEVF 100 (353)
T ss_dssp TTSEEE--------------------------------------------ESES--TTT-EE-----ESB--HHHHHHTS
T ss_pred CCCCeE--------------------------------------------Eecccccee-EE-----cCccceecccccc
Confidence 221000 011111000 10 01110000000 1
Q ss_pred CcccEEEecCCCCeEEEEec-CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEec
Q 013578 250 LKNNMAAISPNGRFLAAAAF-TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNI 328 (440)
Q Consensus 250 ~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~ 328 (440)
..-..+.||||+++|+.... +..|..+.+........ ..-.+..+.+-.-|.--. .-.+.++|+
T Consensus 101 ~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~-----------~yp~~~~~~YPk~G~~np----~v~l~v~~~ 165 (353)
T PF00930_consen 101 DRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS-----------QYPEVESIRYPKAGDPNP----RVSLFVVDL 165 (353)
T ss_dssp SSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE-----------SS-EEEEEE--BTTS-------EEEEEEEES
T ss_pred ccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc-----------cCCcccccccCCCCCcCC----ceEEEEEEC
Confidence 22356899999999987754 45566666532221000 001233444322222111 114566777
Q ss_pred CccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEe-c----CCEEEEEEcCCccchhhhhccccCC---
Q 013578 329 NVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAAT-H----GSTLQWLSVETGKVLDTAEKAHEGE--- 399 (440)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~-~----~~~i~i~d~~~~~~~~~~~~~h~~~--- 399 (440)
.+++.. .+..+. .......-+..+.|.++++ +++.- + ...+.++|..+++..........+-
T Consensus 166 ~~~~~~--------~~~~~~-~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~ 236 (353)
T PF00930_consen 166 ASGKTT--------ELDPPN-SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDV 236 (353)
T ss_dssp SSTCCC--------EE---H-HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSS
T ss_pred CCCcEE--------Eeeecc-ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceee
Confidence 655321 111110 0012245578999999999 44432 2 1366778888776543332222222
Q ss_pred eEEEEec-CCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 400 ITCMAWA-PKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 400 v~~v~~~-~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
-....|. +++. .+|.....||--+||-++
T Consensus 237 ~~~~~~~~~~~~-------~~l~~s~~~G~~hly~~~ 266 (353)
T PF00930_consen 237 YDPPHFLGPDGN-------EFLWISERDGYRHLYLYD 266 (353)
T ss_dssp SSEEEE-TTTSS-------EEEEEEETTSSEEEEEEE
T ss_pred ecccccccCCCC-------EEEEEEEcCCCcEEEEEc
Confidence 2344544 4431 566666677776665543
No 355
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0004 Score=62.65 Aligned_cols=77 Identities=17% Similarity=0.306 Sum_probs=65.6
Q ss_pred CcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceE-EEEEcCCCCEEEEEeCCCcEEEEec
Q 013578 250 LKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVT-WLCFAPNSEQIITASKDGTLRVWNI 328 (440)
Q Consensus 250 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~p~~~~l~s~~~dg~i~iwd~ 328 (440)
..+..+.|+|.-..+|.+..+|.|.++.++. +.+.++.-|...++ +++|.|||+.||.|-.||+|++.|+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~---------qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dv 91 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNW---------QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDV 91 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEecc---------ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEc
Confidence 3467789999999999999999999998762 25666766777777 9999999999999999999999999
Q ss_pred Ccccccc
Q 013578 329 NVRYHLD 335 (440)
Q Consensus 329 ~~~~~~~ 335 (440)
+++..+.
T Consensus 92 e~~~~l~ 98 (665)
T KOG4640|consen 92 EKGGRLV 98 (665)
T ss_pred cCCCcee
Confidence 9876654
No 356
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.60 E-value=0.0042 Score=54.56 Aligned_cols=180 Identities=14% Similarity=0.141 Sum_probs=100.9
Q ss_pred eEEEEeCCCCceeeeeeCCC-CcccEE---EecCC----CCeEEEEec---------C-CCEEEEEeEecCCCceeeeee
Q 013578 230 DISIWHGKTGKLLGNVDTNQ-LKNNMA---AISPN----GRFLAAAAF---------T-ADVKVWEIVYSKDGLVKAVTS 291 (440)
Q Consensus 230 ~i~vwd~~~~~~~~~~~~~~-~~v~~~---~~s~~----~~~l~~~~~---------d-g~i~i~d~~~~~~~~~~~~~~ 291 (440)
.|++.|..+.+.+..+.... ..+.++ .+..+ ..+|++|+. . |.|.+|++.... ........
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~-~~~~~l~~ 81 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESP-ENNFKLKL 81 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS------EEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEccc-ccceEEEE
Confidence 48888888888776654322 233433 33332 567887763 2 889999997641 00112223
Q ss_pred eeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE
Q 013578 292 VMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA 371 (440)
Q Consensus 292 ~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 371 (440)
+... ...++|++++-- ++. |+.+. .+.|.+|++.....+ ......... ..+.++. ..+.+++
T Consensus 82 i~~~-~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l---------~~~~~~~~~---~~i~sl~--~~~~~I~ 143 (321)
T PF03178_consen 82 IHST-EVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTL---------LKKAFYDSP---FYITSLS--VFKNYIL 143 (321)
T ss_dssp EEEE-EESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSE---------EEEEEE-BS---SSEEEEE--EETTEEE
T ss_pred EEEE-eecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccc---------hhhheecce---EEEEEEe--ccccEEE
Confidence 3333 357889998876 444 44444 469999999865411 111111111 1233333 3355888
Q ss_pred Eec-CCEEEEEEcCC-ccchhhh-hccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 372 ATH-GSTLQWLSVET-GKVLDTA-EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 372 ~~~-~~~i~i~d~~~-~~~~~~~-~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
+|+ ...+.++.... ...+..+ .......++++.|-+++ ..++.+..+|.+.++..+.
T Consensus 144 vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~--------~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 144 VGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDE--------DTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SS--------SEEEEEETTSEEEEEEE-S
T ss_pred EEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCC--------cEEEEEcCCCeEEEEEECC
Confidence 876 56666664332 2222222 12234468899998775 5899999999999998874
No 357
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.53 E-value=0.069 Score=48.92 Aligned_cols=261 Identities=14% Similarity=0.096 Sum_probs=126.0
Q ss_pred cceeEEEEccCCCEEEEe-eCC----CcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEE
Q 013578 92 DSVTGLCFSSDGKCLATA-CAD----GVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLY 166 (440)
Q Consensus 92 ~~V~~l~~s~dg~~l~t~-s~d----g~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~ 166 (440)
-.+...++||||++||.+ +.. .++++.|+.++......+.. .....+.|.++++.++....+...
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~------~~~~~~~W~~d~~~~~y~~~~~~~---- 193 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN------PKFSSVSWSDDGKGFFYTRFDEDQ---- 193 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE------EESEEEEECTTSSEEEEEECSTTT----
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc------cccceEEEeCCCCEEEEEEeCccc----
Confidence 345578999999998865 333 35999999987432111111 112338999998887766544100
Q ss_pred eeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee--ee
Q 013578 167 MYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL--GN 244 (440)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~--~~ 244 (440)
.+ - .......|+.|.+.+...- ..
T Consensus 194 --------------------------------------------------~~--~--~~~~~~~v~~~~~gt~~~~d~lv 219 (414)
T PF02897_consen 194 --------------------------------------------------RT--S--DSGYPRQVYRHKLGTPQSEDELV 219 (414)
T ss_dssp --------------------------------------------------SS-----CCGCCEEEEEEETTS-GGG-EEE
T ss_pred --------------------------------------------------cc--c--cCCCCcEEEEEECCCChHhCeeE
Confidence 00 0 1223445777777665322 22
Q ss_pred eeCCCCc--ccEEEecCCCCeEEEEecCC----CEEEEEeEecCCCceeeeeeeeeeeccccceE-EEEEcCCCCEEEEE
Q 013578 245 VDTNQLK--NNMAAISPNGRFLAAAAFTA----DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVT-WLCFAPNSEQIITA 317 (440)
Q Consensus 245 ~~~~~~~--v~~~~~s~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~p~~~~l~s~ 317 (440)
+...... ...+..++++++|+.....+ .+.+.++....... . ....+......+. .+... .+.+++..
T Consensus 220 fe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~-~---~~~~l~~~~~~~~~~v~~~-~~~~yi~T 294 (414)
T PF02897_consen 220 FEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPD-A---KPKLLSPREDGVEYYVDHH-GDRLYILT 294 (414)
T ss_dssp EC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-----SEEEEEESSSS-EEEEEEE-TTEEEEEE
T ss_pred EeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCc-C---CcEEEeCCCCceEEEEEcc-CCEEEEee
Confidence 3332222 34678899999988765433 35666654431000 1 1222222333333 33333 44444433
Q ss_pred e---CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe--cC--CEEEEEEcCCccchh
Q 013578 318 S---KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT--HG--STLQWLSVETGKVLD 390 (440)
Q Consensus 318 ~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~--~~--~~i~i~d~~~~~~~~ 390 (440)
. .++.|.-.++...... .... ..........+..+.. .+.+|+.. .+ ..|++++...+....
T Consensus 295 n~~a~~~~l~~~~l~~~~~~-----~~~~----~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~ 363 (414)
T PF02897_consen 295 NDDAPNGRLVAVDLADPSPA-----EWWT----VLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGKESR 363 (414)
T ss_dssp -TT-TT-EEEEEETTSTSGG-----GEEE----EEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TEEEE
T ss_pred CCCCCCcEEEEecccccccc-----ccee----EEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCcEEe
Confidence 2 2345666666643210 0000 1111111122333443 34444442 23 478999998333333
Q ss_pred hhhccccCCeEEEEecCCCCCCCCCcceEEEEeeC---CCeEEEEeCCCCCC
Q 013578 391 TAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSV---DKKVKLWLAPSLES 439 (440)
Q Consensus 391 ~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~---Dg~i~vw~~~~~~~ 439 (440)
.+...-.+.|..+...++. + .+.++-++ -+++..||+.+++.
T Consensus 364 ~~~~p~~g~v~~~~~~~~~------~-~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 364 EIPLPEAGSVSGVSGDFDS------D-ELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEESSSSSEEEEEES-TT-------S-EEEEEEEETTEEEEEEEEETTTTCE
T ss_pred eecCCcceEEeccCCCCCC------C-EEEEEEeCCCCCCEEEEEECCCCCE
Confidence 3322334456666655554 1 34444443 46788888888764
No 358
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.53 E-value=0.033 Score=45.06 Aligned_cols=140 Identities=14% Similarity=0.062 Sum_probs=79.5
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccccccccccccc
Q 013578 103 GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQ 182 (440)
Q Consensus 103 g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (440)
..+++.||..+.+.--|..++... .....+..+.+-+.. -|++++.+..++. +++......
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~------We~ilg~RiE~sa~v-vgdfVV~GCy~g~---lYfl~~~tG--------- 83 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLI------WEAILGVRIECSAIV-VGDFVVLGCYSGG---LYFLCVKTG--------- 83 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEE------eehhhCceeeeeeEE-ECCEEEEEEccCc---EEEEEecch---------
Confidence 356777888888877777766532 111122334333333 4556777776633 333332222
Q ss_pred CCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCC
Q 013578 183 SKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGR 262 (440)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 262 (440)
...|........+.. ....+++. ++..++.|++.+..|.++..++...+.......+-++.|-..
T Consensus 84 ------s~~w~f~~~~~vk~~--------a~~d~~~g-lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~ 148 (354)
T KOG4649|consen 84 ------SQIWNFVILETVKVR--------AQCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDG 148 (354)
T ss_pred ------hheeeeeehhhhccc--------eEEcCCCc-eEEEecCCCcEEEecccccceEEecccCCceeccceecCCCc
Confidence 112222211111111 11245666 899999999999999999999988776655555566777445
Q ss_pred eEEEEecCCCEEEE
Q 013578 263 FLAAAAFTADVKVW 276 (440)
Q Consensus 263 ~l~~~~~dg~i~i~ 276 (440)
.|+.+...|.+.--
T Consensus 149 sly~a~t~G~vlav 162 (354)
T KOG4649|consen 149 SLYAAITAGAVLAV 162 (354)
T ss_pred eEEEEeccceEEEE
Confidence 55666666655433
No 359
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.51 E-value=0.019 Score=51.94 Aligned_cols=183 Identities=17% Similarity=0.131 Sum_probs=93.5
Q ss_pred eEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC
Q 013578 230 DISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP 309 (440)
Q Consensus 230 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p 309 (440)
.|++|+.. |+.+.++.-..+.+.++.|+.+.+ |++...||.+++||+.... ...-...+....-....+....+..
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~--~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEF--QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCCCce--eechhhhccccCcccccccccccCC
Confidence 59999865 778877766568899999988654 5566689999999984221 0000001111111222333334444
Q ss_pred CCCEEEEEeCCCcEEEEe-cCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEE-EEecCCEEEEEEcCCcc
Q 013578 310 NSEQIITASKDGTLRVWN-INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKIL-AATHGSTLQWLSVETGK 387 (440)
Q Consensus 310 ~~~~l~s~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~~~i~i~d~~~~~ 387 (440)
+|-.+.+ .++.+.+.+ ..........+. .+.................++.+.... ....++.+.+.+....+
T Consensus 138 ~GivvLt--~~~~~~~v~n~~~~~~~~~~~~----~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~ 211 (410)
T PF04841_consen 138 NGIVVLT--GNNRFYVVNNIDEPVKLRRLPE----IPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK 211 (410)
T ss_pred CCEEEEC--CCCeEEEEeCccccchhhcccc----CCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc
Confidence 5533333 344443332 221101000000 000000000000000012344444433 33456677755543332
Q ss_pred chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 388 VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 388 ~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
. + ...+++..|+.||++ ++||.-..+|.+.|...+
T Consensus 212 ~---i--~~~~~i~~iavSpng--------~~iAl~t~~g~l~v~ssD 246 (410)
T PF04841_consen 212 Q---I--DSDGPIIKIAVSPNG--------KFIALFTDSGNLWVVSSD 246 (410)
T ss_pred c---c--cCCCCeEEEEECCCC--------CEEEEEECCCCEEEEECc
Confidence 2 2 134689999999998 888888889998887643
No 360
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.0066 Score=54.04 Aligned_cols=150 Identities=17% Similarity=0.161 Sum_probs=99.3
Q ss_pred CCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCC-------eEEEEecCCCEEEEEeEecCCCceee
Q 013578 216 ADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGR-------FLAAAAFTADVKVWEIVYSKDGLVKA 288 (440)
Q Consensus 216 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~l~~~~~dg~i~i~d~~~~~~~~~~~ 288 (440)
.+.+.++.++.....++-.|++.|+.+..+..+.. |+.+.+.|+.+ .-++|-.|..|.-||.+..... ...
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~ 420 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLA 420 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eee
Confidence 34444566666667799999999999999988765 78888888653 2345667888999998754311 111
Q ss_pred eeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC
Q 013578 289 VTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK 368 (440)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 368 (440)
+..-+.+. ....-.|.+-..+| +++.||.+|.||+||-- +..- ....++-..+|..+..+.+|+
T Consensus 421 ~~q~kqy~-~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri-~~~A-------------KTAlPgLG~~I~hVdvtadGK 484 (644)
T KOG2395|consen 421 VVQSKQYS-TKNNFSCFATTESG-YIVVGSLKGDIRLYDRI-GRRA-------------KTALPGLGDAIKHVDVTADGK 484 (644)
T ss_pred eeeccccc-cccccceeeecCCc-eEEEeecCCcEEeehhh-hhhh-------------hhcccccCCceeeEEeeccCc
Confidence 11111221 12234556555444 69999999999999963 2111 111223345688899999999
Q ss_pred EEEEecCCEEEEEEc
Q 013578 369 ILAATHGSTLQWLSV 383 (440)
Q Consensus 369 ~l~~~~~~~i~i~d~ 383 (440)
++++..+..+.+.++
T Consensus 485 wil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 485 WILATCKTYLLLIDT 499 (644)
T ss_pred EEEEecccEEEEEEE
Confidence 999988888877765
No 361
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.48 E-value=0.07 Score=47.76 Aligned_cols=83 Identities=11% Similarity=0.110 Sum_probs=54.6
Q ss_pred eeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCC-eEEEEecCCCCC--------C-CC-CcceEEEE
Q 013578 355 TLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGE-ITCMAWAPKTIP--------M-GN-QQVSVLAT 422 (440)
Q Consensus 355 ~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~-v~~v~~~~~~~~--------~-~~-~~~~~l~t 422 (440)
...+.+++.+|++++.|+.+ -|.|.++|+.++..++..+ |..+. +.-+........ . .. ...-+++-
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK-GYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK-GYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc-cCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 34577899999999988876 4999999999999988874 54432 222221111100 0 00 01135566
Q ss_pred eeCCCeEEEEeCCCCC
Q 013578 423 SSVDKKVKLWLAPSLE 438 (440)
Q Consensus 423 ~~~Dg~i~vw~~~~~~ 438 (440)
+-.-|.|-||.+..+.
T Consensus 386 aprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 386 APRRGILEVWSMRQGP 401 (415)
T ss_pred eccCCeEEEEecCCCC
Confidence 7779999999998874
No 362
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.48 E-value=0.013 Score=40.91 Aligned_cols=95 Identities=19% Similarity=0.284 Sum_probs=64.8
Q ss_pred CCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee
Q 013578 215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ 294 (440)
Q Consensus 215 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 294 (440)
..+|...|+.|+.|..|++|+- .+.+.++.. ...+++++-... ..|+.+..+|+|-+|+-.. .+..
T Consensus 11 d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~----------RlWR 76 (111)
T PF14783_consen 11 DGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ----------RLWR 76 (111)
T ss_pred CCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc----------eeee
Confidence 4566678999999999999974 456666665 456777766655 6688999999999998522 2223
Q ss_pred eeccccceEEEEEcC-C--C-CEEEEEeCCCcEE
Q 013578 295 LKGHKSAVTWLCFAP-N--S-EQIITASKDGTLR 324 (440)
Q Consensus 295 ~~~h~~~v~~~~~~p-~--~-~~l~s~~~dg~i~ 324 (440)
.+. +..++++.+.. + | .-|++|-.+|.|-
T Consensus 77 iKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 332 23366665543 3 2 2588888888764
No 363
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.46 E-value=0.061 Score=47.27 Aligned_cols=98 Identities=17% Similarity=0.152 Sum_probs=62.4
Q ss_pred CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEE
Q 013578 228 GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF 307 (440)
Q Consensus 228 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 307 (440)
++.|.+|++...+.+..................++++++|+....+.++.++... .....+.. ......++++.|
T Consensus 106 g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~----~~l~~va~-d~~~~~v~~~~~ 180 (321)
T PF03178_consen 106 GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEEN----NKLILVAR-DYQPRWVTAAEF 180 (321)
T ss_dssp TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTT----E-EEEEEE-ESS-BEEEEEEE
T ss_pred cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccC----CEEEEEEe-cCCCccEEEEEE
Confidence 3568899888776222222223333445555557799999999999999776422 11112221 223456889999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCc
Q 013578 308 APNSEQIITASKDGTLRVWNINV 330 (440)
Q Consensus 308 ~p~~~~l~s~~~dg~i~iwd~~~ 330 (440)
-++++.++.+..+|.+.++....
T Consensus 181 l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 181 LVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp E-SSSEEEEEETTSEEEEEEE-S
T ss_pred ecCCcEEEEEcCCCeEEEEEECC
Confidence 87777899999999999998863
No 364
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00065 Score=61.34 Aligned_cols=94 Identities=24% Similarity=0.349 Sum_probs=70.3
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeee-eeEEeCCCCCEEEEec-CC
Q 013578 299 KSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQY-DRLSLSSDGKILAATH-GS 376 (440)
Q Consensus 299 ~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~g~~l~~~~-~~ 376 (440)
...|.-+.|+|.-..+|.+..+|.|.+..++-. .+ ..++.. ...+ .+++|.|||++||+|- ||
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~q-Rl---------wtip~p-----~~~v~~sL~W~~DGkllaVg~kdG 84 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNWQ-RL---------WTIPIP-----GENVTASLCWRPDGKLLAVGFKDG 84 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEeccc-ee---------EeccCC-----CCccceeeeecCCCCEEEEEecCC
Confidence 345778999999999999999999988777621 11 111111 1123 4899999999999996 99
Q ss_pred EEEEEEcCCccchhhhhccccCCeEEEEecC
Q 013578 377 TLQWLSVETGKVLDTAEKAHEGEITCMAWAP 407 (440)
Q Consensus 377 ~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~ 407 (440)
+|++.|++++..+......-...|.++.|.+
T Consensus 85 ~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 85 TIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eEEEEEccCCCceeccccccccchheeeccc
Confidence 9999999999988774334667788888864
No 365
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.37 E-value=0.0024 Score=56.96 Aligned_cols=236 Identities=11% Similarity=0.111 Sum_probs=97.4
Q ss_pred cccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEE---ecCCCCCCCceEEEcc-----CC---
Q 013578 82 LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLR---INLPPGGPPTAVAFAD-----NA--- 150 (440)
Q Consensus 82 ~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~---~~~~~~~~v~~v~~~~-----~~--- 150 (440)
.+...++...++|++++.|. =.++|.|..+|.+.|.|++...-.....+. ........++++.|.- |+
T Consensus 77 ~P~~l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySS 155 (395)
T PF08596_consen 77 LPLTLLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSS 155 (395)
T ss_dssp EEEEEE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEE
T ss_pred CchhheeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccc
Confidence 34555666699999999984 459999999999999999654321110000 0111234577788862 22
Q ss_pred CeEEEEeecCCcceEEeecccccccccccccc-CCCCCCceeecccccccceeEEEeec-ccccccCCCCCeEEEEeeCC
Q 013578 151 TSIVVATHNLSGCSLYMYGEEKAISTNEGKQQ-SKLPGPEIKWEHHKVHDKRAILTLFG-ASATYGTADGSTIIASCSEG 228 (440)
Q Consensus 151 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~d 228 (440)
-.+++++..+....+.+.-............. .....+.................... .....--..-..+++.++ +
T Consensus 156 i~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e 234 (395)
T PF08596_consen 156 ICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-E 234 (395)
T ss_dssp EEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--S
T ss_pred eEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-c
Confidence 24445555433333333311111110000000 00001110000000000000000000 000000001122455555 4
Q ss_pred ceEEEEeCCCCceeeeeeCCCCcccEEEe-----cCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec----cc
Q 013578 229 TDISIWHGKTGKLLGNVDTNQLKNNMAAI-----SPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG----HK 299 (440)
Q Consensus 229 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~-----s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~----h~ 299 (440)
..++++...+.+..............+.+ ...+..|++-..+|.|++|.+..-+ .+..++- ..
T Consensus 235 ~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk--------ei~~~~l~~~~d~ 306 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK--------EIKSVSLPPPLDS 306 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT----------EEEEEE-SS---H
T ss_pred cceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch--------HhhcccCCCcccc
Confidence 45999999888776555422122233344 2356788888999999999985433 2333222 22
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEec
Q 013578 300 SAVTWLCFAPNSEQIITASKDGTLRVWNI 328 (440)
Q Consensus 300 ~~v~~~~~~p~~~~l~s~~~dg~i~iwd~ 328 (440)
..+....++++|+.++-.+.. .+.++.+
T Consensus 307 ~~~~~ssis~~Gdi~~~~gps-E~~l~sv 334 (395)
T PF08596_consen 307 RRLSSSSISRNGDIFYWTGPS-EIQLFSV 334 (395)
T ss_dssp HHHTT-EE-TTS-EEEE-SSS-EEEEEEE
T ss_pred ccccccEECCCCCEEEEeCcc-cEEEEEE
Confidence 234556778888877666543 4444443
No 366
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.37 E-value=0.007 Score=58.21 Aligned_cols=140 Identities=14% Similarity=0.094 Sum_probs=91.1
Q ss_pred ecCCCEEEEEeEecCCCceeeeeeeeeeeccccc-eEEEEEcC-----CCCEEEEEeCCCcEEEEecCccccccCCCCcc
Q 013578 268 AFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSA-VTWLCFAP-----NSEQIITASKDGTLRVWNINVRYHLDEDPKTL 341 (440)
Q Consensus 268 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~p-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 341 (440)
.....|+-.|+..++ .+..+..|... |..++-.. .....+.|-.+..+..||.|-... ...
T Consensus 501 ~~~~~ly~mDLe~GK--------VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-----k~v 567 (794)
T PF08553_consen 501 NNPNKLYKMDLERGK--------VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-----KLV 567 (794)
T ss_pred CCCCceEEEecCCCc--------EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC-----cee
Confidence 345778888887776 66777766643 55443221 123456677788999999984320 000
Q ss_pred ccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEE
Q 013578 342 KVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLA 421 (440)
Q Consensus 342 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~ 421 (440)
. ...........++|++-+.+|.+.+++.+|.||+||. .|+...+...+-..+|.+|..+.|| ++|+
T Consensus 568 ---~-~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DG--------kwil 634 (794)
T PF08553_consen 568 ---D-SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADG--------KWIL 634 (794)
T ss_pred ---e-ccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCC--------cEEE
Confidence 0 0011112334577888888998877778999999995 4454555545677899999999998 6666
Q ss_pred EeeCCCeEEEEeC
Q 013578 422 TSSVDKKVKLWLA 434 (440)
Q Consensus 422 t~~~Dg~i~vw~~ 434 (440)
..+ +..+.+++.
T Consensus 635 aTc-~tyLlLi~t 646 (794)
T PF08553_consen 635 ATC-KTYLLLIDT 646 (794)
T ss_pred Eee-cceEEEEEE
Confidence 555 556777665
No 367
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.35 E-value=0.08 Score=45.37 Aligned_cols=154 Identities=11% Similarity=0.126 Sum_probs=77.0
Q ss_pred CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCC
Q 013578 260 NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPK 339 (440)
Q Consensus 260 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 339 (440)
.+...++.....+|.+|.......... .....+. ....+.+++|. ++.|+.|..+ ...+.|+.++....-...
T Consensus 103 ~~~~~L~va~kk~i~i~~~~~~~~~f~---~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~ 175 (275)
T PF00780_consen 103 EGSRRLCVAVKKKILIYEWNDPRNSFS---KLLKEIS-LPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDP 175 (275)
T ss_pred ccceEEEEEECCEEEEEEEECCccccc---ceeEEEE-cCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCc
Confidence 333444444566999999876421100 1233333 34778999997 5577777654 578889885432110000
Q ss_pred ccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchh--hhhccccCCeEEEEecCCCCCCCCCcc
Q 013578 340 TLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLD--TAEKAHEGEITCMAWAPKTIPMGNQQV 417 (440)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~--~~~~~h~~~v~~v~~~~~~~~~~~~~~ 417 (440)
.... ...........++..+.. +++.+|++.++ .-.+.|. .|+... .+ .-...+.++++..
T Consensus 176 ~~~~--~~~~~~~~~~~~~~~~~~-~~~e~Ll~~~~-~g~fv~~-~G~~~r~~~i--~W~~~p~~~~~~~---------- 238 (275)
T PF00780_consen 176 SDSS--SSFKSRNSSSKPLGIFQL-SDNEFLLCYDN-IGVFVNK-NGEPSRKSTI--QWSSAPQSVAYSS---------- 238 (275)
T ss_pred cCCc--chhhhcccCCCceEEEEe-CCceEEEEecc-eEEEEcC-CCCcCcccEE--EcCCchhEEEEEC----------
Confidence 0000 000011111122222333 34566665433 2223333 444333 22 1334566777755
Q ss_pred eEEEEeeCCCeEEEEeCCCCC
Q 013578 418 SVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 418 ~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
.+|+..+. +.|-||++.+++
T Consensus 239 pyli~~~~-~~iEV~~~~~~~ 258 (275)
T PF00780_consen 239 PYLIAFSS-NSIEVRSLETGE 258 (275)
T ss_pred CEEEEECC-CEEEEEECcCCc
Confidence 36666665 459999999875
No 368
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.33 E-value=0.057 Score=44.45 Aligned_cols=165 Identities=18% Similarity=0.258 Sum_probs=93.1
Q ss_pred CCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCC-CeEEEEecCCC-EEEEEeEecCCCceeeeeee
Q 013578 215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNG-RFLAAAAFTAD-VKVWEIVYSKDGLVKAVTSV 292 (440)
Q Consensus 215 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~ 292 (440)
..||+..+++.+++|.+ +..... ......++++|.- .-++.+-.-|+ -.++|....+.........-
T Consensus 44 ~~dgs~g~a~~~eaGk~----------v~~~~l-paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~ 112 (366)
T COG3490 44 ARDGSFGAATLSEAGKI----------VFATAL-PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEG 112 (366)
T ss_pred ccCCceeEEEEccCCce----------eeeeec-ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccC
Confidence 45666556666655543 333221 1122345666643 33444444444 45677665553322222233
Q ss_pred eeeeccccceEEEEEcCCCCEEEEEeC-----CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC
Q 013578 293 MQLKGHKSAVTWLCFAPNSEQIITASK-----DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG 367 (440)
Q Consensus 293 ~~~~~h~~~v~~~~~~p~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 367 (440)
..+.+|. .|||||.+|+..-. -|.|-|||.+.+.. +.-+++.+. ..-..+.|.+||
T Consensus 113 RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fq--------rvgE~~t~G-----iGpHev~lm~DG 173 (366)
T COG3490 113 RHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQ--------RVGEFSTHG-----IGPHEVTLMADG 173 (366)
T ss_pred ceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccc--------eecccccCC-----cCcceeEEecCC
Confidence 4455554 58999999987643 36799999984422 111222222 223458999999
Q ss_pred CEEEEecCC-------------------EEEEEEcCCccchhhhhc---cccCCeEEEEecCCC
Q 013578 368 KILAATHGS-------------------TLQWLSVETGKVLDTAEK---AHEGEITCMAWAPKT 409 (440)
Q Consensus 368 ~~l~~~~~~-------------------~i~i~d~~~~~~~~~~~~---~h~~~v~~v~~~~~~ 409 (440)
+.|+...+| ++.+.|..+|+++....- -+.-.|..++..+|+
T Consensus 174 rtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dg 237 (366)
T COG3490 174 RTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDG 237 (366)
T ss_pred cEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCC
Confidence 999875432 355667777776654321 244568888888886
No 369
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.27 E-value=0.026 Score=48.40 Aligned_cols=157 Identities=13% Similarity=0.088 Sum_probs=90.8
Q ss_pred cCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCC
Q 013578 258 SPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDED 337 (440)
Q Consensus 258 s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 337 (440)
...++.|+.|+++| ++++++.... ...... +...|..+...|+-+.|++-+ |+.+.++++.........
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~-------~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~ 72 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPS-------KPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTS 72 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCc-------cceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccc
Confidence 34678999999998 9999982221 011111 233499999999877776665 599999999865443211
Q ss_pred CCccccccccccCCCCCeeeeeeEE---eCCCCCEEEEecCCEEEEEEcCCc-----cchhhhhccccCCeEEEEecCCC
Q 013578 338 PKTLKVLPIPLLDSNGATLQYDRLS---LSSDGKILAATHGSTLQWLSVETG-----KVLDTAEKAHEGEITCMAWAPKT 409 (440)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~v~~~~---~s~~g~~l~~~~~~~i~i~d~~~~-----~~~~~~~~~h~~~v~~v~~~~~~ 409 (440)
....................+...+ -...+..|+++....|.+|..... +....+ .-.+.+.+++|.++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~--~lp~~~~~i~~~~~- 149 (275)
T PF00780_consen 73 APLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI--SLPDPPSSIAFLGN- 149 (275)
T ss_pred ccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE--EcCCCcEEEEEeCC-
Confidence 1000000000000001111122233 233455777888889999887653 233443 24578999999964
Q ss_pred CCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 410 IPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 410 ~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
.|+.|..++ ..+.|+.++.
T Consensus 150 ---------~i~v~~~~~-f~~idl~~~~ 168 (275)
T PF00780_consen 150 ---------KICVGTSKG-FYLIDLNTGS 168 (275)
T ss_pred ---------EEEEEeCCc-eEEEecCCCC
Confidence 566665444 7777777654
No 370
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.23 E-value=0.11 Score=44.50 Aligned_cols=157 Identities=13% Similarity=0.126 Sum_probs=77.6
Q ss_pred CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN 327 (440)
Q Consensus 248 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd 327 (440)
....+..+..+++|++++++..-....-||--.. .+.+. -..-...|..|.|.|++.+.+.+ ..|.|++=+
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~------~w~~~--~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT------TWQPH--NRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD 213 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S------S-EEE--E--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCc------cceEE--ccCccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence 3456777888999998888754433445553111 11111 11235789999999998765544 788888776
Q ss_pred cCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhh--ccccCCeEEEEe
Q 013578 328 INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAE--KAHEGEITCMAW 405 (440)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~--~~h~~~v~~v~~ 405 (440)
.... ......+..........+..++|.+++...++|..|.+.. ....|+.-.... ..-...++.|.|
T Consensus 214 ~~~~---------~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f 283 (302)
T PF14870_consen 214 DPDD---------GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV-STDGGKTWQKDRVGENVPSNLYRIVF 283 (302)
T ss_dssp -TTE---------EEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE-ESSTTSS-EE-GGGTTSSS---EEEE
T ss_pred CCCC---------ccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEE-eCCCCccceECccccCCCCceEEEEE
Confidence 2111 1111111122222334477899999999999988886544 444444322221 123456889999
Q ss_pred cCCCCCCCCCcceEEEEeeCCCeEEEE
Q 013578 406 APKTIPMGNQQVSVLATSSVDKKVKLW 432 (440)
Q Consensus 406 ~~~~~~~~~~~~~~l~t~~~Dg~i~vw 432 (440)
.++. .-..-+.||.|.-|
T Consensus 284 ~~~~---------~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 284 VNPD---------KGFVLGQDGVLLRY 301 (302)
T ss_dssp EETT---------EEEEE-STTEEEEE
T ss_pred cCCC---------ceEEECCCcEEEEe
Confidence 7664 44455678887665
No 371
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.20 E-value=0.021 Score=39.94 Aligned_cols=105 Identities=20% Similarity=0.222 Sum_probs=64.7
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCE
Q 013578 302 VTWLCFAP---NS-EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGST 377 (440)
Q Consensus 302 v~~~~~~p---~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 377 (440)
|++|++.. +| +.|+.||.|..||+|+=.... ..+ .....|..+.-...+++..+-.+|+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~---------~Ei--------~e~~~v~~L~~~~~~~F~Y~l~NGT 64 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIV---------AEI--------TETDKVTSLCSLGGGRFAYALANGT 64 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEE---------EEE--------ecccceEEEEEcCCCEEEEEecCCE
Confidence 55666554 33 479999999999999865211 000 1123366677777777666667899
Q ss_pred EEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEE
Q 013578 378 LQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKL 431 (440)
Q Consensus 378 i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~v 431 (440)
|-+|+- .+.+..++ ....++++++..-. .....-|++|-.+|.|-+
T Consensus 65 VGvY~~--~~RlWRiK--SK~~~~~~~~~D~~----gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 65 VGVYDR--SQRLWRIK--SKNQVTSMAFYDIN----GDGVPELIVGWSNGKVEV 110 (111)
T ss_pred EEEEeC--cceeeeec--cCCCeEEEEEEcCC----CCCceEEEEEecCCeEEe
Confidence 999975 33444443 22336666654432 012257999999998753
No 372
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.19 E-value=0.00079 Score=53.00 Aligned_cols=102 Identities=13% Similarity=0.135 Sum_probs=64.0
Q ss_pred EEEEeeCCceEEEEeCCCC-ceeeeeeCCCCcccE-EEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc
Q 013578 221 IIASCSEGTDISIWHGKTG-KLLGNVDTNQLKNNM-AAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH 298 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h 298 (440)
-++.|+.+|.|.+|+.... .....+......+.+ +..-.++.+..++..||.|+.|++...+ .+-....|
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k--------~~g~~g~h 143 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK--------VLGYVGQH 143 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCc--------eeeeeccc
Confidence 6888999999999987621 221222222222332 2333456688899999999999986554 33334445
Q ss_pred c-cceEEEEEcCCCCEEEEE--eCCCcEEEEecCc
Q 013578 299 K-SAVTWLCFAPNSEQIITA--SKDGTLRVWNINV 330 (440)
Q Consensus 299 ~-~~v~~~~~~p~~~~l~s~--~~dg~i~iwd~~~ 330 (440)
. .++..+.....++.++.. |.|..++.|++..
T Consensus 144 ~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 144 NFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 5 455555555566666666 7777777787763
No 373
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.15 E-value=0.057 Score=50.48 Aligned_cols=205 Identities=14% Similarity=0.074 Sum_probs=106.5
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCc------cc--EEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeee
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLK------NN--MAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSV 292 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~------v~--~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 292 (440)
.++.++.++.|.-+|.++++.+-.+...... +. .+.+. ++..++.++.+|.|+-+|.++++ .+
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~--------~~ 133 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGK--------QV 133 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCC--------Ee
Confidence 5666777899999999999887666543220 00 01111 22678888899999999987776 22
Q ss_pred eeeecccc--ceEEEEEcC--CCCEEEEEe---------CCCcEEEEecCccccccCCCCccc-cccccccCC------C
Q 013578 293 MQLKGHKS--AVTWLCFAP--NSEQIITAS---------KDGTLRVWNINVRYHLDEDPKTLK-VLPIPLLDS------N 352 (440)
Q Consensus 293 ~~~~~h~~--~v~~~~~~p--~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~------~ 352 (440)
-....... .-..+.-+| .+..++.++ .++.+.-+|..+++.+........ ....+.... .
T Consensus 134 W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 213 (488)
T cd00216 134 WKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGP 213 (488)
T ss_pred eeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecC
Confidence 22221111 000011111 123444443 367888889888766543211100 000000000 0
Q ss_pred CCeeeeeeEEeCCCCCEEEEe-cCC------------------EEEEEEcCCccchhhhhccccC-----CeEEEEec--
Q 013578 353 GATLQYDRLSLSSDGKILAAT-HGS------------------TLQWLSVETGKVLDTAEKAHEG-----EITCMAWA-- 406 (440)
Q Consensus 353 ~~~~~v~~~~~s~~g~~l~~~-~~~------------------~i~i~d~~~~~~~~~~~~~h~~-----~v~~v~~~-- 406 (440)
+........++.+.+..+..+ .++ .|.-+|..+|+.+......+.. ......+.
T Consensus 214 ~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~ 293 (488)
T cd00216 214 GGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADI 293 (488)
T ss_pred CCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEec
Confidence 000111234555544444443 233 7999999999988775322211 00000111
Q ss_pred --CCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 407 --PKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 407 --~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
-++ .....++.++.+|.+...|..+++.
T Consensus 294 ~~~~g-----~~~~~V~~g~~~G~l~ald~~tG~~ 323 (488)
T cd00216 294 KPKDG-----KPVPAIVHAPKNGFFYVLDRTTGKL 323 (488)
T ss_pred cccCC-----CeeEEEEEECCCceEEEEECCCCcE
Confidence 111 1113678888899999999988863
No 374
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.06 E-value=0.001 Score=52.43 Aligned_cols=105 Identities=16% Similarity=0.207 Sum_probs=62.4
Q ss_pred CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-ecCCEEEEEEcCCccch
Q 013578 311 SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-THGSTLQWLSVETGKVL 389 (440)
Q Consensus 311 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~i~i~d~~~~~~~ 389 (440)
+..+++|+.||.|.+|......... .... .+.......+.-..++.+..+ +.++.|+.|++..++.+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~------d~~~------s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~ 137 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHS------DRVC------SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVL 137 (238)
T ss_pred CceEEeecccceEEEecCCccchHH------Hhhh------cccccceeccccccccceeEEeccCCceeeeccccCcee
Confidence 4568999999999999887221110 0000 000010111222223334444 45999999999998888
Q ss_pred hhhhcccc-CCeEEEEecCCCCCCCCCcceEEEEe--eCCCeEEEEeCCC
Q 013578 390 DTAEKAHE-GEITCMAWAPKTIPMGNQQVSVLATS--SVDKKVKLWLAPS 436 (440)
Q Consensus 390 ~~~~~~h~-~~v~~v~~~~~~~~~~~~~~~~l~t~--~~Dg~i~vw~~~~ 436 (440)
... ..|. .++........+ +.++.+ |.|..++.|++..
T Consensus 138 g~~-g~h~~~~~e~~ivv~sd--------~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 138 GYV-GQHNFESGEELIVVGSD--------EFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eee-ccccCCCcceeEEecCC--------ceEEeeccccchhhhhcchhh
Confidence 776 4566 455555555444 577777 7788888887764
No 375
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.99 E-value=0.0032 Score=36.46 Aligned_cols=32 Identities=22% Similarity=0.580 Sum_probs=28.8
Q ss_pred ccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 396 HEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 396 h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
....|..++|+|.. .+||.+..||.|.+++++
T Consensus 10 l~~~v~~~~w~P~m--------dLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTM--------DLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCC--------CEEEEEECCCeEEEEECC
Confidence 34579999999998 899999999999999994
No 376
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.91 E-value=0.004 Score=36.04 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=28.4
Q ss_pred CcceeEEEEccCCCEEEEeeCCCcEEEEecC
Q 013578 91 GDSVTGLCFSSDGKCLATACADGVIRVHKLD 121 (440)
Q Consensus 91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~ 121 (440)
...|.+++|+|...+||.|..||.|.++.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999984
No 377
>PHA02713 hypothetical protein; Provisional
Probab=96.85 E-value=0.072 Score=50.56 Aligned_cols=184 Identities=7% Similarity=0.024 Sum_probs=88.7
Q ss_pred EEEEeeCC------ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCC-----EEEEEeEecCCCceeee
Q 013578 221 IIASCSEG------TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTAD-----VKVWEIVYSKDGLVKAV 289 (440)
Q Consensus 221 ~l~s~~~d------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~ 289 (440)
+++.|+.+ ..+..||..+..-...-.............-+|+..+.|+.++. +..||..... +
T Consensus 306 IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~------W 379 (557)
T PHA02713 306 IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDK------W 379 (557)
T ss_pred EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCe------E
Confidence 55666643 34778888776432211111111122223346788888887643 6778764321 2
Q ss_pred eeeeeeeccccceEEEEEcCCCCEEEEEeCCC-----------------------cEEEEecCccccccCCCCccccccc
Q 013578 290 TSVMQLKGHKSAVTWLCFAPNSEQIITASKDG-----------------------TLRVWNINVRYHLDEDPKTLKVLPI 346 (440)
Q Consensus 290 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~ 346 (440)
..+..+.........+.+ ++...+.|+.++ .+..||.++..... ...+..
T Consensus 380 ~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~-----v~~m~~ 452 (557)
T PHA02713 380 KMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWET-----LPNFWT 452 (557)
T ss_pred EECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEee-----cCCCCc
Confidence 222222211111222233 677777777653 35667666443210 000000
Q ss_pred cccCCCCCeeeeeeEEeCCCCCEEEEec-C------CEEEEEEcCC-c--cchhhhhccccCCeEEEEecCCCCCCCCCc
Q 013578 347 PLLDSNGATLQYDRLSLSSDGKILAATH-G------STLQWLSVET-G--KVLDTAEKAHEGEITCMAWAPKTIPMGNQQ 416 (440)
Q Consensus 347 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~------~~i~i~d~~~-~--~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~ 416 (440)
.... .++ ..-+|++.+.|+ + ..+..||..+ . +.+..+. ........+.+ ++
T Consensus 453 ---~r~~-----~~~-~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~-~~r~~~~~~~~--~~------- 513 (557)
T PHA02713 453 ---GTIR-----PGV-VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE-SRLSALHTILH--DN------- 513 (557)
T ss_pred ---cccc-----CcE-EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC-cccccceeEEE--CC-------
Confidence 0000 012 223455555443 2 2467899886 3 3444442 22222333333 33
Q ss_pred ceEEEEeeCCC--eEEEEeCCCC
Q 013578 417 VSVLATSSVDK--KVKLWLAPSL 437 (440)
Q Consensus 417 ~~~l~t~~~Dg--~i~vw~~~~~ 437 (440)
.+.++||.|| .+-.||..+.
T Consensus 514 -~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 514 -TIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred -EEEEEeeecceeehhhcCcccc
Confidence 7899999888 6777777654
No 378
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.034 Score=49.80 Aligned_cols=144 Identities=12% Similarity=0.107 Sum_probs=92.7
Q ss_pred EEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCC--E-----EEEEeCCCcEEEEecCccccccC
Q 013578 264 LAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSE--Q-----IITASKDGTLRVWNINVRYHLDE 336 (440)
Q Consensus 264 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~--~-----l~s~~~dg~i~iwd~~~~~~~~~ 336 (440)
|..+.....++-.|+..++ .+...+-|.. |.-+.+.|+.+ . -+.|=.|..|.-||.+-...
T Consensus 349 l~~~~~~~~l~klDIE~GK--------IVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~--- 416 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGK--------IVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK--- 416 (644)
T ss_pred eeCCCCcCcceeeecccce--------eeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc---
Confidence 3445555667777877766 5666665655 77788888653 1 23455678899999983321
Q ss_pred CCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCc
Q 013578 337 DPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQ 416 (440)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~ 416 (440)
. .+.............+.|.+-..+|.+++++.+|.|++||. .+....+...+-..+|..|..+.+|
T Consensus 417 --~---kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadG------- 483 (644)
T KOG2395|consen 417 --N---KLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADG------- 483 (644)
T ss_pred --c---eeeeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccC-------
Confidence 0 11111111112233456777777887777777999999998 7776666667888899999999998
Q ss_pred ceEEEEeeCCCeEEEEeC
Q 013578 417 VSVLATSSVDKKVKLWLA 434 (440)
Q Consensus 417 ~~~l~t~~~Dg~i~vw~~ 434 (440)
.+|+..+ +..+.+-++
T Consensus 484 -Kwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 484 -KWILATC-KTYLLLIDT 499 (644)
T ss_pred -cEEEEec-ccEEEEEEE
Confidence 5555443 555555544
No 379
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.82 E-value=0.46 Score=44.84 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=21.6
Q ss_pred CCCC---EEEEEeCCCcEEEEecCccccc
Q 013578 309 PNSE---QIITASKDGTLRVWNINVRYHL 334 (440)
Q Consensus 309 p~~~---~l~s~~~dg~i~iwd~~~~~~~ 334 (440)
.+|+ .++.+..+|.+.+.|-++++.+
T Consensus 310 ~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 310 KDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 4665 6778999999999999998765
No 380
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.75 E-value=0.59 Score=45.98 Aligned_cols=203 Identities=12% Similarity=0.076 Sum_probs=111.2
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCc--------ccEEEec----------------CCCCeEEEEecCCCEEEE
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLK--------NNMAAIS----------------PNGRFLAAAAFTADVKVW 276 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--------v~~~~~s----------------~~~~~l~~~~~dg~i~i~ 276 (440)
.++.++.++.|.-.|..+|+.+-++...... .+.+.+- .++..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 6777788888999999999988776543211 1112221 134578888899999888
Q ss_pred EeEecCCCceeeeeeeeeeeccccce-------------EEEEEcC--CCCEEEEEeC----------CCcEEEEecCcc
Q 013578 277 EIVYSKDGLVKAVTSVMQLKGHKSAV-------------TWLCFAP--NSEQIITASK----------DGTLRVWNINVR 331 (440)
Q Consensus 277 d~~~~~~~~~~~~~~~~~~~~h~~~v-------------~~~~~~p--~~~~l~s~~~----------dg~i~iwd~~~~ 331 (440)
|..+++ .+..+. ..+.| ..+.-.| .+..++.|+. +|.|+-+|.+++
T Consensus 276 DA~TGk--------~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TG 346 (764)
T TIGR03074 276 DADTGK--------LCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTG 346 (764)
T ss_pred ECCCCC--------EEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCC
Confidence 877665 222111 11111 1111222 1334555542 688999999998
Q ss_pred ccccCCCCccccccc-----cccCCCCCeeeeeeEEeCCCCCEEEEe-------------------cCCEEEEEEcCCcc
Q 013578 332 YHLDEDPKTLKVLPI-----PLLDSNGATLQYDRLSLSSDGKILAAT-------------------HGSTLQWLSVETGK 387 (440)
Q Consensus 332 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~s~~g~~l~~~-------------------~~~~i~i~d~~~~~ 387 (440)
+.+-........... ..... +.......+++.+...++..+ ..+.|.-.|.++|+
T Consensus 347 kl~W~~~~g~p~~~~~~~~g~~~~~-gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk 425 (764)
T TIGR03074 347 ALVWAWDPGNPDPTAPPAPGETYTR-NTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGK 425 (764)
T ss_pred cEeeEEecCCCCcccCCCCCCEecc-CCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCc
Confidence 876432211000000 00000 111112345566654443331 12567778889999
Q ss_pred chhhhhccccCCeEE---------EEecC-CCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 388 VLDTAEKAHEGEITC---------MAWAP-KTIPMGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 388 ~~~~~~~~h~~~v~~---------v~~~~-~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
....++..|.+ +++ +.+.. ++ .....++.++.+|.+.+.|.++++.
T Consensus 426 ~~W~~Q~~~hD-~WD~D~~~~p~L~d~~~~~G-----~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 426 ERWVFQTVHHD-LWDMDVPAQPSLVDLPDADG-----TTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred eEEEecccCCc-cccccccCCceEEeeecCCC-----cEeeEEEEECCCCEEEEEECCCCCE
Confidence 88766532321 222 11211 22 1224899999999999999999874
No 381
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.73 E-value=0.66 Score=45.39 Aligned_cols=175 Identities=12% Similarity=0.093 Sum_probs=107.3
Q ss_pred EEEEeCCCCceeeeeeCCC----CcccEEEecCC-CCeEEEEe----------cCCCEEEEEeEecCCCceeeeeeeeee
Q 013578 231 ISIWHGKTGKLLGNVDTNQ----LKNNMAAISPN-GRFLAAAA----------FTADVKVWEIVYSKDGLVKAVTSVMQL 295 (440)
Q Consensus 231 i~vwd~~~~~~~~~~~~~~----~~v~~~~~s~~-~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~ 295 (440)
++++|-.+.+.+...+... ..+.++.|..| +.++++|+ ..|.|.+|.+...+ ..+.+...
T Consensus 752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~-----~L~~v~e~ 826 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN-----SLELVAET 826 (1096)
T ss_pred EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC-----ceeeeeee
Confidence 7778877776654443221 12344457776 77888886 35889999886622 11122222
Q ss_pred eccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-
Q 013578 296 KGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH- 374 (440)
Q Consensus 296 ~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~- 374 (440)
. -++.+.++..- +|++||.-+ ..|++|++.+.+.++. ...+...+..+...-.|..+++|+
T Consensus 827 ~-v~Gav~aL~~f-ngkllA~In--~~vrLye~t~~~eLr~--------------e~~~~~~~~aL~l~v~gdeI~VgDl 888 (1096)
T KOG1897|consen 827 V-VKGAVYALVEF-NGKLLAGIN--QSVRLYEWTTERELRI--------------ECNISNPIIALDLQVKGDEIAVGDL 888 (1096)
T ss_pred e-eccceeehhhh-CCeEEEecC--cEEEEEEccccceehh--------------hhcccCCeEEEEEEecCcEEEEeec
Confidence 2 23555555432 677776554 5899999987644321 122334466788888899999987
Q ss_pred CCEEE--EEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 375 GSTLQ--WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 375 ~~~i~--i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
-+.+. .|+...|........-+....+++.+-.+. .++-+..+|.+++-..++.
T Consensus 889 m~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d---------~ylgae~~gNlf~v~~d~~ 944 (1096)
T KOG1897|consen 889 MRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDD---------TYLGAENSGNLFTVRKDSD 944 (1096)
T ss_pred cceEEEEEEeccCCceEEeehhhCccceeeEEEecCc---------eEEeecccccEEEEEecCC
Confidence 45544 455555544443334577788888888774 5666677888888776643
No 382
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.71 E-value=0.3 Score=41.12 Aligned_cols=155 Identities=16% Similarity=0.117 Sum_probs=89.9
Q ss_pred CCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCC
Q 013578 140 PPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGS 219 (440)
Q Consensus 140 ~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (440)
.+.+.+++++++.++..........+++............ ......-.+.+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~--------------------------g~~l~~PS~d~~g~ 78 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT--------------------------GGSLTRPSWDPDGW 78 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc--------------------------CCccccccccCCCC
Confidence 6889999999999988885545667776655443211110 00111122355555
Q ss_pred eEEEEeeCCceEEEE-eCCCCcee-eeeeCC--CCcccEEEecCCCCeEEEEe---cCCCEEEEEeEecCCCceee-eee
Q 013578 220 TIIASCSEGTDISIW-HGKTGKLL-GNVDTN--QLKNNMAAISPNGRFLAAAA---FTADVKVWEIVYSKDGLVKA-VTS 291 (440)
Q Consensus 220 ~~l~s~~~d~~i~vw-d~~~~~~~-~~~~~~--~~~v~~~~~s~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~-~~~ 291 (440)
..+....+...+++ +..+++.. ..+... ...|..+.+||||..++... .+++|.+--+....++.... ...
T Consensus 79 -~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~ 157 (253)
T PF10647_consen 79 -VWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGP 157 (253)
T ss_pred -EEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccc
Confidence 44444444445555 33333221 122221 12799999999999988776 35788888877666551111 112
Q ss_pred eeeeeccccceEEEEEcCCCCEEEEEeCCC
Q 013578 292 VMQLKGHKSAVTWLCFAPNSEQIITASKDG 321 (440)
Q Consensus 292 ~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg 321 (440)
..........+..++|.+++.+++.+...+
T Consensus 158 ~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 158 RRVAPPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred eEecccccCcceeeeecCCCEEEEEeCCCC
Confidence 222223456899999999998776665433
No 383
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.0066 Score=58.72 Aligned_cols=101 Identities=17% Similarity=0.270 Sum_probs=72.4
Q ss_pred CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccc
Q 013578 310 NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKV 388 (440)
Q Consensus 310 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~ 388 (440)
.+..++.|+..|.+...|+...-+ +.+.......+|++++|+.+|++++.|. +|.|.+||+..++.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~-------------~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~ 164 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLG-------------PLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI 164 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccc-------------hhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc
Confidence 456788888889999888875311 1233444566799999999999999986 89999999999998
Q ss_pred hhhhhccccCCeEEE---EecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578 389 LDTAEKAHEGEITCM---AWAPKTIPMGNQQVSVLATSSVDKKVKLWLA 434 (440)
Q Consensus 389 ~~~~~~~h~~~v~~v---~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~ 434 (440)
++.+ ..|..+.+.+ .+..++ ..++++..-|. +|++
T Consensus 165 l~~i-~e~~ap~t~vi~v~~t~~n--------S~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 165 LKVI-TEHGAPVTGVIFVGRTSQN--------SKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eeee-eecCCccceEEEEEEeCCC--------cEEEEccCCCc--eEEE
Confidence 8777 3555554444 343443 56778777775 5654
No 384
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.64 E-value=0.56 Score=44.24 Aligned_cols=200 Identities=13% Similarity=0.062 Sum_probs=110.7
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCC-ccc---E-------EEecCCCCeEEEEecCCCEEEEEeEecCCCceeee
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQL-KNN---M-------AAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAV 289 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~v~---~-------~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 289 (440)
.++.++.++.|.-+|..+|+.+-++..... .+. + +++ .+..++.++.|+.+.-+|..+++
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk------- 141 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGK------- 141 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCC-------
Confidence 566677778899999999998877653211 111 1 111 23567788889999999987766
Q ss_pred eeeeeee--ccccceEEEEEcC---CCCEEEEEe------CCCcEEEEecCccccccCCCCccccc--------------
Q 013578 290 TSVMQLK--GHKSAVTWLCFAP---NSEQIITAS------KDGTLRVWNINVRYHLDEDPKTLKVL-------------- 344 (440)
Q Consensus 290 ~~~~~~~--~h~~~v~~~~~~p---~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~-------------- 344 (440)
.+-... .+... ..+.-+| ++. ++.+. .+|.|.-+|.++++.+-.........
T Consensus 142 -~~W~~~~~~~~~~-~~~tssP~v~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~ 218 (527)
T TIGR03075 142 -VVWSKKNGDYKAG-YTITAAPLVVKGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEP 218 (527)
T ss_pred -EEeeccccccccc-ccccCCcEEECCE-EEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccccc
Confidence 221111 11100 0111122 343 44443 26889999998887764322211100
Q ss_pred -----cccccCCCCCeeeeeeEEeCCCCCEEEEec------C-----------CEEEEEEcCCccchhhhhccccCCeEE
Q 013578 345 -----PIPLLDSNGATLQYDRLSLSSDGKILAATH------G-----------STLQWLSVETGKVLDTAEKAHEGEITC 402 (440)
Q Consensus 345 -----~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~------~-----------~~i~i~d~~~~~~~~~~~~~h~~~v~~ 402 (440)
.-..... +.......+++.+...++..+. + ..|.-.|.+||+....++..|. .+++
T Consensus 219 ~~~tw~~~~~~~-gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~-D~wD 296 (527)
T TIGR03075 219 GAKTWPGDAWKT-GGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPH-DEWD 296 (527)
T ss_pred ccCCCCCCcccc-CCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCC-CCcc
Confidence 0000011 1112233567777666555432 1 2677889999998776643222 1222
Q ss_pred E---------EecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 403 M---------AWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 403 v---------~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
. ....++ .....++.+..+|.+.+.|..++|.
T Consensus 297 ~d~~~~p~l~d~~~~G-----~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 297 YDGVNEMILFDLKKDG-----KPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred ccCCCCcEEEEeccCC-----cEEEEEEEeCCCceEEEEECCCCce
Confidence 1 121232 2225788999999999999998874
No 385
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.63 E-value=0.0054 Score=58.16 Aligned_cols=110 Identities=15% Similarity=0.152 Sum_probs=65.0
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccE-----------EEecCCCCeEEEEecCCCEEEEEeEecCCCceeee
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNM-----------AAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAV 289 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~-----------~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 289 (440)
++..+..+++|++.+..+... ..+..|...+.. -.++|||+.|+.+..||.++.|.+..... ...
T Consensus 197 ~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~---~~~ 272 (1283)
T KOG1916|consen 197 YICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGK---IVH 272 (1283)
T ss_pred eeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeecc---ccH
Confidence 555566677777766543221 222334332222 24799999999999999999998754321 333
Q ss_pred eeeeeeeccc-cceEEEEEcCCC---------CEEEEEe-CCCcEEEEecCccccc
Q 013578 290 TSVMQLKGHK-SAVTWLCFAPNS---------EQIITAS-KDGTLRVWNINVRYHL 334 (440)
Q Consensus 290 ~~~~~~~~h~-~~v~~~~~~p~~---------~~l~s~~-~dg~i~iwd~~~~~~~ 334 (440)
++++..+.|. .+-.|.-++.+. .++++++ .+..+++|.-..-.|+
T Consensus 273 rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 273 RCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred hhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 4667777777 344444354322 1334444 4567899987655443
No 386
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.62 E-value=0.13 Score=44.16 Aligned_cols=164 Identities=16% Similarity=0.171 Sum_probs=83.3
Q ss_pred CEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCc-eEEEccCCCeEEEEeecCCcceEEeecccccccccccccc
Q 013578 104 KCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPT-AVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQ 182 (440)
Q Consensus 104 ~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~-~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (440)
..+.+-+.||.+.-..++............+.....++. .-++...+..++..+.++....+.+-...-.
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~--------- 218 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAK--------- 218 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEE---------
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccc---------
Confidence 457788899999999998655444333344433333332 3344555555555555543333333222110
Q ss_pred CCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEee--C-------CceEEEEeCCCCceeeeeeCCCCccc
Q 013578 183 SKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCS--E-------GTDISIWHGKTGKLLGNVDTNQLKNN 253 (440)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~-------d~~i~vwd~~~~~~~~~~~~~~~~v~ 253 (440)
....|..........-....+.....+++..+.+++..- . ...|.++|+.+++.+..+... .++.
T Consensus 219 -----~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~ 292 (342)
T PF06433_consen 219 -----FGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPID 292 (342)
T ss_dssp -----EEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEES
T ss_pred -----ccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-Cccc
Confidence 011222211111111111112222222333332322221 1 124889999999999998763 4577
Q ss_pred EEEecCCCC-eEEEEe-cCCCEEEEEeEecC
Q 013578 254 MAAISPNGR-FLAAAA-FTADVKVWEIVYSK 282 (440)
Q Consensus 254 ~~~~s~~~~-~l~~~~-~dg~i~i~d~~~~~ 282 (440)
+++++.+.+ +|++.+ .++.+.+||..+++
T Consensus 293 Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 293 SIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp EEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred eEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 899999876 454444 57899999987765
No 387
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.60 E-value=0.088 Score=49.59 Aligned_cols=130 Identities=9% Similarity=0.132 Sum_probs=76.9
Q ss_pred eeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEc--CCCCEEEEEeCCC
Q 013578 244 NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFA--PNSEQIITASKDG 321 (440)
Q Consensus 244 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--p~~~~l~s~~~dg 321 (440)
++...-...+.+.-+.-++..++-+....+.|||.+.+. ......+ ...+.|..++|. |+++.+++.|...
T Consensus 24 ~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~------lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~ 96 (631)
T PF12234_consen 24 TFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGV------LEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPH 96 (631)
T ss_pred EEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcE------EEEeeee-cCCCceeeceeeecCCCCEEEEEEcCc
Confidence 334444445556666666665565556679999986543 1122223 356889999995 5888888888899
Q ss_pred cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEc
Q 013578 322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSV 383 (440)
Q Consensus 322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~ 383 (440)
.|.+|.-.........+.-.....+.+..... .+|....|.++|.+++ |.++.+.|+|-
T Consensus 97 ~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~--h~Igds~Wl~~G~LvV-~sGNqlfv~dk 155 (631)
T PF12234_consen 97 HVLLYTQLRYDYTNKGPSWAPIRKIDISSHTP--HPIGDSIWLKDGTLVV-GSGNQLFVFDK 155 (631)
T ss_pred EEEEEEccchhhhcCCcccceeEEEEeecCCC--CCccceeEecCCeEEE-EeCCEEEEECC
Confidence 99998653222222222211111112222222 3477899999997655 44677777764
No 388
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.55 E-value=0.46 Score=45.21 Aligned_cols=185 Identities=14% Similarity=0.207 Sum_probs=90.0
Q ss_pred EEEEeeCC------ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCC-----EEEEEeEecCCCceeee
Q 013578 221 IIASCSEG------TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTAD-----VKVWEIVYSKDGLVKAV 289 (440)
Q Consensus 221 ~l~s~~~d------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~ 289 (440)
+.++|+.| ..+..||..+++-...-.........-...-+|...++|+.||. +..||....+ +
T Consensus 335 lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~------W 408 (571)
T KOG4441|consen 335 LYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNK------W 408 (571)
T ss_pred EEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCc------c
Confidence 45555555 34777888776643322211222221222337888999998875 5566654332 2
Q ss_pred eeeeeeeccccceEEEEEcCCCCEEEEEeCCC------cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe
Q 013578 290 TSVMQLKGHKSAVTWLCFAPNSEQIITASKDG------TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL 363 (440)
Q Consensus 290 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 363 (440)
..+..+.......-...+ +|...++|+.|+ ++..||..+.......+ +. ....++ .++.
T Consensus 409 ~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~-----M~---~~R~~~-----g~a~ 473 (571)
T KOG4441|consen 409 TPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAP-----MN---TRRSGF-----GVAV 473 (571)
T ss_pred cccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCC-----cc---cccccc-----eEEE
Confidence 222222222222222333 677788888655 45677776553321110 00 001111 1222
Q ss_pred CCCCCEEEE-ecCC-----EEEEEEcCCccchhhhh-ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCe-----EEE
Q 013578 364 SSDGKILAA-THGS-----TLQWLSVETGKVLDTAE-KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKK-----VKL 431 (440)
Q Consensus 364 s~~g~~l~~-~~~~-----~i~i~d~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~-----i~v 431 (440)
-++.+.+. |.++ .+..||..+.+-...-. ......+..+.+. + .+.+.||.||. |..
T Consensus 474 -~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~-~---------~ly~vGG~~~~~~l~~ve~ 542 (571)
T KOG4441|consen 474 -LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLG-G---------KLYAVGGFDGNNNLNTVEC 542 (571)
T ss_pred -ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEEC-C---------EEEEEecccCccccceeEE
Confidence 24555554 4343 47889887765332221 1223333333333 2 57888888864 566
Q ss_pred EeCCCC
Q 013578 432 WLAPSL 437 (440)
Q Consensus 432 w~~~~~ 437 (440)
||..+.
T Consensus 543 ydp~~d 548 (571)
T KOG4441|consen 543 YDPETD 548 (571)
T ss_pred cCCCCC
Confidence 665543
No 389
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.52 E-value=0.92 Score=44.46 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=45.0
Q ss_pred eeeeeeEEeCCC-CCEEEEec-----------CCEEEEEEcCCccchhhh-hccccCCeEEEEecCCCCCCCCCcceEEE
Q 013578 355 TLQYDRLSLSSD-GKILAATH-----------GSTLQWLSVETGKVLDTA-EKAHEGEITCMAWAPKTIPMGNQQVSVLA 421 (440)
Q Consensus 355 ~~~v~~~~~s~~-g~~l~~~~-----------~~~i~i~d~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~~~~~~~~~l~ 421 (440)
...+.++.|..| +.++++|. .|.|.+|....+..+... +..-.+.|.++.--.. ++||
T Consensus 774 ~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fng---------kllA 844 (1096)
T KOG1897|consen 774 ALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNG---------KLLA 844 (1096)
T ss_pred eeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCC---------eEEE
Confidence 345666778887 77777763 278999988874433322 1123456666654443 4555
Q ss_pred EeeCCCeEEEEeCCCC
Q 013578 422 TSSVDKKVKLWLAPSL 437 (440)
Q Consensus 422 t~~~Dg~i~vw~~~~~ 437 (440)
+-...|++|+....
T Consensus 845 --~In~~vrLye~t~~ 858 (1096)
T KOG1897|consen 845 --GINQSVRLYEWTTE 858 (1096)
T ss_pred --ecCcEEEEEEcccc
Confidence 45667999998776
No 390
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.50 E-value=0.66 Score=42.56 Aligned_cols=197 Identities=11% Similarity=0.094 Sum_probs=101.3
Q ss_pred cCCCCCeEEEEeeCCc----eEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCC---------C--EEEEEe
Q 013578 214 GTADGSTIIASCSEGT----DISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTA---------D--VKVWEI 278 (440)
Q Consensus 214 ~~~~~~~~l~s~~~d~----~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---------~--i~i~d~ 278 (440)
++|+|+.++++-+..| .|+++|+.+++.+...-. ......+.|.++++.|+....+. . |+.|.+
T Consensus 131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~ 209 (414)
T PF02897_consen 131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKL 209 (414)
T ss_dssp ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEET
T ss_pred ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEEC
Confidence 3889996766655444 499999999977643211 12223499999998887776443 2 555555
Q ss_pred EecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC---C-CcEEEEecCccccccCCCCccccccccccCCCCC
Q 013578 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK---D-GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGA 354 (440)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~---d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (440)
.+... .-..+..-.........+..++++++|+..+. + ..+.+.|+...... ......+ .....+.
T Consensus 210 gt~~~----~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~---~~~~~~l---~~~~~~~ 279 (414)
T PF02897_consen 210 GTPQS----EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSP---DAKPKLL---SPREDGV 279 (414)
T ss_dssp TS-GG----G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTS---S-SEEEE---EESSSS-
T ss_pred CCChH----hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCC---cCCcEEE---eCCCCce
Confidence 33321 11122222222222568889999998765442 2 34677777643100 0011110 0111111
Q ss_pred eeeeeeEEeCCCCCEEEEec----CCEEEEEEcCCccc--hh-hhhccccC--CeEEEEecCCCCCCCCCcceEEEEeeC
Q 013578 355 TLQYDRLSLSSDGKILAATH----GSTLQWLSVETGKV--LD-TAEKAHEG--EITCMAWAPKTIPMGNQQVSVLATSSV 425 (440)
Q Consensus 355 ~~~v~~~~~s~~g~~l~~~~----~~~i~i~d~~~~~~--~~-~~~~~h~~--~v~~v~~~~~~~~~~~~~~~~l~t~~~ 425 (440)
.. .+... ++.+++... .+.|.-.++..... .. .+ ..|.. .+..+....+ .+++.--.
T Consensus 280 ~~---~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l-~~~~~~~~l~~~~~~~~---------~Lvl~~~~ 345 (414)
T PF02897_consen 280 EY---YVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVL-IPEDEDVSLEDVSLFKD---------YLVLSYRE 345 (414)
T ss_dssp EE---EEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEE-E--SSSEEEEEEEEETT---------EEEEEEEE
T ss_pred EE---EEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEE-cCCCCceeEEEEEEECC---------EEEEEEEE
Confidence 11 12222 444444432 46787788877663 11 22 34554 4666666555 56666666
Q ss_pred CCe--EEEEeCC
Q 013578 426 DKK--VKLWLAP 435 (440)
Q Consensus 426 Dg~--i~vw~~~ 435 (440)
++. |+++++.
T Consensus 346 ~~~~~l~v~~~~ 357 (414)
T PF02897_consen 346 NGSSRLRVYDLD 357 (414)
T ss_dssp TTEEEEEEEETT
T ss_pred CCccEEEEEECC
Confidence 654 6777776
No 391
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.49 E-value=0.4 Score=39.82 Aligned_cols=180 Identities=16% Similarity=0.169 Sum_probs=95.3
Q ss_pred CCCCeEEEEeeCCc--eEEEEeCCCCceeeeeeCCCCc-ccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeee
Q 013578 216 ADGSTIIASCSEGT--DISIWHGKTGKLLGNVDTNQLK-NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSV 292 (440)
Q Consensus 216 ~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 292 (440)
.+|. ++-+.+.-| .|+.+|+.+++........... --.++.. +++.....=.++...+||..+-+ .+
T Consensus 54 ~~g~-LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~--------~~ 123 (264)
T PF05096_consen 54 DDGT-LYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLK--------KI 123 (264)
T ss_dssp ETTE-EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTE--------EE
T ss_pred CCCE-EEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccce--------EE
Confidence 4444 556666554 5999999999887666543211 1123332 23333444467888899975332 33
Q ss_pred eeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE
Q 013578 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA 372 (440)
Q Consensus 293 ~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 372 (440)
.++. ..+.=+.++. ++..|+.......++++|..+..... .+. +.........++-+-|- +|.+.|-
T Consensus 124 ~~~~-y~~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~~~~-------~i~--V~~~g~pv~~LNELE~i-~G~IyAN 190 (264)
T PF05096_consen 124 GTFP-YPGEGWGLTS--DGKRLIMSDGSSRLYFLDPETFKEVR-------TIQ--VTDNGRPVSNLNELEYI-NGKIYAN 190 (264)
T ss_dssp EEEE--SSS--EEEE--CSSCEEEE-SSSEEEEE-TTT-SEEE-------EEE---EETTEE---EEEEEEE-TTEEEEE
T ss_pred EEEe-cCCcceEEEc--CCCEEEEECCccceEEECCcccceEE-------EEE--EEECCEECCCcEeEEEE-cCEEEEE
Confidence 3333 2234456663 67777777667789999977543221 111 11111112234445553 5666654
Q ss_pred ec-CCEEEEEEcCCccchhhhh-----c---------cccCCeEEEEecCCCCCCCCCcceEEEEeeC
Q 013578 373 TH-GSTLQWLSVETGKVLDTAE-----K---------AHEGEITCMAWAPKTIPMGNQQVSVLATSSV 425 (440)
Q Consensus 373 ~~-~~~i~i~d~~~~~~~~~~~-----~---------~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~ 425 (440)
-- ...|...|..+|+....+. . ...+-.+.|+|.|... ++++||=.
T Consensus 191 VW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~-------~l~vTGK~ 251 (264)
T PF05096_consen 191 VWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD-------RLFVTGKL 251 (264)
T ss_dssp ETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT-------EEEEEETT
T ss_pred eCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC-------EEEEEeCC
Confidence 43 6778888888887654321 0 1134689999998752 67777743
No 392
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.46 E-value=0.23 Score=46.96 Aligned_cols=141 Identities=13% Similarity=0.135 Sum_probs=79.0
Q ss_pred CCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccC
Q 013578 271 ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLD 350 (440)
Q Consensus 271 g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 350 (440)
|.|+.|..+...+.....+.....+...-....-+.-+.-++.-+.-+...++.|||.+.+....+ .
T Consensus 1 g~~~~~~a~v~~~~~~~~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~-------------~ 67 (631)
T PF12234_consen 1 GRIRTWTARVDTESNKIEWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYE-------------E 67 (631)
T ss_pred CeeEEEEEEEcCCCCeEEEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEe-------------e
Confidence 456666665444444444444555554444555555555454433333445799999986542111 1
Q ss_pred CCCCeeeeeeEEeC--CCCC-EEEEecCCEEEEEEcCC---------ccchhhh-hcccc-CCeEEEEecCCCCCCCCCc
Q 013578 351 SNGATLQYDRLSLS--SDGK-ILAATHGSTLQWLSVET---------GKVLDTA-EKAHE-GEITCMAWAPKTIPMGNQQ 416 (440)
Q Consensus 351 ~~~~~~~v~~~~~s--~~g~-~l~~~~~~~i~i~d~~~---------~~~~~~~-~~~h~-~~v~~v~~~~~~~~~~~~~ 416 (440)
.......|..+.|. |+|+ +|++|..+.|.+|.-.. ...+..+ ...|+ .+|.+..|.++|
T Consensus 68 ~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G------- 140 (631)
T PF12234_consen 68 SFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG------- 140 (631)
T ss_pred eecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCC-------
Confidence 11223446677775 6777 56678899999885421 1122221 02333 579999999997
Q ss_pred ceEEEEeeCCCeEEEEeC
Q 013578 417 VSVLATSSVDKKVKLWLA 434 (440)
Q Consensus 417 ~~~l~t~~~Dg~i~vw~~ 434 (440)
.|+.|+ .+.+.|++-
T Consensus 141 --~LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 141 --TLVVGS-GNQLFVFDK 155 (631)
T ss_pred --eEEEEe-CCEEEEECC
Confidence 555554 456777753
No 393
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=0.0088 Score=57.92 Aligned_cols=98 Identities=17% Similarity=0.249 Sum_probs=68.9
Q ss_pred EEEEeeCCceEEEEeCCCC-ceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccc
Q 013578 221 IIASCSEGTDISIWHGKTG-KLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK 299 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~ 299 (440)
.++.|+..|.+-..|+... .+...-...+++|++++|+.+|..++.|-.+|.|.+||+..++ .++.+..|.
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k--------~l~~i~e~~ 172 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK--------ILKVITEHG 172 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc--------ceeeeeecC
Confidence 6788888888988887643 1112223346789999999999999999999999999997765 455555555
Q ss_pred cceEE---EEEcCCCCEEEEEeCCCcEEEEec
Q 013578 300 SAVTW---LCFAPNSEQIITASKDGTLRVWNI 328 (440)
Q Consensus 300 ~~v~~---~~~~p~~~~l~s~~~dg~i~iwd~ 328 (440)
.+.++ +.+..++..++++..-|. +|.+
T Consensus 173 ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 173 APVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 44443 344445556777777775 5544
No 394
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.45 E-value=0.52 Score=40.72 Aligned_cols=113 Identities=17% Similarity=0.141 Sum_probs=72.7
Q ss_pred cccceeEEE-eecccccccCCCCCeEEEEeeCCceEEEEeCCC--Cce-----eeeeeCCCCcccEEEecCCCCeEEEEe
Q 013578 197 VHDKRAILT-LFGASATYGTADGSTIIASCSEGTDISIWHGKT--GKL-----LGNVDTNQLKNNMAAISPNGRFLAAAA 268 (440)
Q Consensus 197 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~--~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~ 268 (440)
.+..+.... ...+..+.++||++.++++=+..+.|.-|++.. +.. ...+....+..-.++...+|++.+++.
T Consensus 152 g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~ 231 (307)
T COG3386 152 GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAV 231 (307)
T ss_pred CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecc
Confidence 344444444 667888899999997777777778899887752 211 112222345566788888898886555
Q ss_pred cCC-CEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEc-CCCCEEEEEe
Q 013578 269 FTA-DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFA-PNSEQIITAS 318 (440)
Q Consensus 269 ~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-p~~~~l~s~~ 318 (440)
.+| .|.+|+.. ++ .+....-....+++++|- |+.+.|+..+
T Consensus 232 ~~g~~v~~~~pd-G~--------l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 232 WGGGRVVRFNPD-GK--------LLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred cCCceEEEECCC-Cc--------EEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 554 89999876 43 455555555678888884 3445554443
No 395
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.40 E-value=0.46 Score=39.66 Aligned_cols=82 Identities=13% Similarity=0.031 Sum_probs=50.1
Q ss_pred CCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeee--eeeccccceEEEEEcCC-CCEEEEEeCCCcEEE
Q 013578 249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM--QLKGHKSAVTWLCFAPN-SEQIITASKDGTLRV 325 (440)
Q Consensus 249 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~~p~-~~~l~s~~~dg~i~i 325 (440)
+...-.++|+|..+.|+++-+..=+.||.+....+.......... ...-.-..|.++.|++. +.+|+-+.+++.+.-
T Consensus 180 N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~E 259 (316)
T COG3204 180 NKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLE 259 (316)
T ss_pred CcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEE
Confidence 445667999999999999988888899887644321111000000 00001235778888874 455666667777777
Q ss_pred EecCc
Q 013578 326 WNINV 330 (440)
Q Consensus 326 wd~~~ 330 (440)
.|...
T Consensus 260 vd~~G 264 (316)
T COG3204 260 VDLSG 264 (316)
T ss_pred EecCC
Confidence 77653
No 396
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.36 E-value=0.7 Score=41.24 Aligned_cols=257 Identities=14% Similarity=0.182 Sum_probs=98.1
Q ss_pred CCCCCCCCcccCcccccccc-ccC-cceeEEEEc-----------cCCCEEEEee-CCCcEEEEecCCCCCcceeeEEec
Q 013578 69 SHGDKDQNKRHHPLDVNTLK-GHG-DSVTGLCFS-----------SDGKCLATAC-ADGVIRVHKLDDASSKSFKFLRIN 134 (440)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~l~-~H~-~~V~~l~~s-----------~dg~~l~t~s-~dg~v~vW~~~~~~~~~~~~~~~~ 134 (440)
++-+.+.......+.++.+. .|. +.....-|+ .+.++|+..+ ..+.|.|.|+.+....+. +.+..
T Consensus 40 atVDvdP~S~tYgqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~-l~KvI 118 (461)
T PF05694_consen 40 ATVDVDPDSPTYGQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPR-LHKVI 118 (461)
T ss_dssp EEEE--TTSTTTTSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-E-EEEEE
T ss_pred EEEECCCCCCCcccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCc-eEeee
Confidence 34444444444444455442 232 355555554 2456777776 678899999885433221 22211
Q ss_pred CC---C----CCCCceEEEccCCCeEEEEeecCCc---ceEEeeccccccccc--cccccCCCCCCceeeccccccccee
Q 013578 135 LP---P----GGPPTAVAFADNATSIVVATHNLSG---CSLYMYGEEKAISTN--EGKQQSKLPGPEIKWEHHKVHDKRA 202 (440)
Q Consensus 135 ~~---~----~~~v~~v~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (440)
.+ + -.....+.-.|+|..++++-.+..+ ..+.+.+.+...... +........+..+-|.. +....
T Consensus 119 e~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp---r~nvM 195 (461)
T PF05694_consen 119 EPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP---RHNVM 195 (461)
T ss_dssp -HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET---TTTEE
T ss_pred CHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC---CCCEE
Confidence 11 0 0123345556888888877554322 234444444221111 11111111122222221 11112
Q ss_pred EEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCc--ccEEEe--cCCCCeEEEEec-CCCEEEEE
Q 013578 203 ILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLK--NNMAAI--SPNGRFLAAAAF-TADVKVWE 277 (440)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--v~~~~~--s~~~~~l~~~~~-dg~i~i~d 277 (440)
+...++...++...-...-+..+....++.+||+.+.+.++++...... ...+.| .|+..+-++|+. ..+|..|-
T Consensus 196 iSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~ 275 (461)
T PF05694_consen 196 ISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFY 275 (461)
T ss_dssp EE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEE
T ss_pred EEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEE
Confidence 2222222111110000001222345678999999999999998765422 334444 455555444443 33443333
Q ss_pred eEecCCCceeeeeeeeeeec-----------------cccceEEEEEcCCCCEEEEEe-CCCcEEEEecCccc
Q 013578 278 IVYSKDGLVKAVTSVMQLKG-----------------HKSAVTWLCFAPNSEQIITAS-KDGTLRVWNINVRY 332 (440)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~-----------------h~~~v~~~~~~p~~~~l~s~~-~dg~i~iwd~~~~~ 332 (440)
...++.. ..+.+..+.. -..-|+.|..|.|.++|+.++ .+|.|+.||+....
T Consensus 276 --k~~~g~W-~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 276 --KDDDGEW-AAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp --E-ETTEE-EEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred --EcCCCCe-eeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 2222221 1112222211 134579999999999987666 69999999998543
No 397
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.30 E-value=0.44 Score=38.29 Aligned_cols=101 Identities=17% Similarity=0.259 Sum_probs=61.6
Q ss_pred eEEEEEcCCCCEEE-EEeCCCcEEEEe--cCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-ecCCE
Q 013578 302 VTWLCFAPNSEQII-TASKDGTLRVWN--INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-THGST 377 (440)
Q Consensus 302 v~~~~~~p~~~~l~-s~~~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~ 377 (440)
-+.++|+.+.+.+. +-+.+-+|.-|| ..++..... +.+ +......... ...-..++...+|.+.++ -+.++
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr--~~i--~dlrk~~~~e-~~~PDGm~ID~eG~L~Va~~ng~~ 234 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNR--KVI--FDLRKSQPFE-SLEPDGMTIDTEGNLYVATFNGGT 234 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCc--cee--EEeccCCCcC-CCCCCcceEccCCcEEEEEecCcE
Confidence 35788987776554 556677887787 444433211 111 1000000000 111123556667775555 45899
Q ss_pred EEEEEcCCccchhhhhccccCCeEEEEecCC
Q 013578 378 LQWLSVETGKVLDTAEKAHEGEITCMAWAPK 408 (440)
Q Consensus 378 i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~ 408 (440)
|..+|..+|+.+.++. -....|++++|-..
T Consensus 235 V~~~dp~tGK~L~eik-lPt~qitsccFgGk 264 (310)
T KOG4499|consen 235 VQKVDPTTGKILLEIK-LPTPQITSCCFGGK 264 (310)
T ss_pred EEEECCCCCcEEEEEE-cCCCceEEEEecCC
Confidence 9999999999999884 56889999999765
No 398
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.24 E-value=0.86 Score=41.14 Aligned_cols=163 Identities=13% Similarity=0.135 Sum_probs=87.1
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEc---c--CCCeEEEEeecCCcceEEeecccccccc
Q 013578 102 DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFA---D--NATSIVVATHNLSGCSLYMYGEEKAIST 176 (440)
Q Consensus 102 dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~---~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 176 (440)
+...|+.||..|.+|||+......... .+........+|..++.- + +...|++-.. ..+.+|........
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~-~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP----~kl~vY~v~~~~g~ 110 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPE-DLLLETQLKDPILQVECGKFVSGSEDLQLAVLHP----RKLSVYSVSLVDGT 110 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCc-cEEEEEecCCcEEEEEeccccCCCCcceEEEecC----CEEEEEEEEecCCC
Confidence 346899999999999999865543322 122233344677776643 2 2223443322 24444443111100
Q ss_pred ccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEE
Q 013578 177 NEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAA 256 (440)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 256 (440)
.. ..........+.+.- ........ ...+....++.++..-+.||.+.+|+-+.....+.+.. .--...+.
T Consensus 111 ~~---~g~~~~L~~~yeh~l--~~~a~nm~---~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~ 181 (418)
T PF14727_consen 111 VE---HGNQYQLELIYEHSL--QRTAYNMC---CGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLC 181 (418)
T ss_pred cc---cCcEEEEEEEEEEec--ccceeEEE---EEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeE
Confidence 00 000000011111111 00111111 11222445566899999999999999765544444443 23335578
Q ss_pred ecCCCCeEEEEecCCCEEEEEe
Q 013578 257 ISPNGRFLAAAAFTADVKVWEI 278 (440)
Q Consensus 257 ~s~~~~~l~~~~~dg~i~i~d~ 278 (440)
+.+....|++++.+..+..|..
T Consensus 182 Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 182 YCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred EeecCCEEEEecCceeEEEecH
Confidence 8898899999998888888875
No 399
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.24 E-value=0.6 Score=39.30 Aligned_cols=150 Identities=14% Similarity=0.119 Sum_probs=83.6
Q ss_pred cccCCCCCeEEEEe--eCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEe-EecCCCceee
Q 013578 212 TYGTADGSTIIASC--SEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEI-VYSKDGLVKA 288 (440)
Q Consensus 212 ~~~~~~~~~~l~s~--~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~ 288 (440)
...+++++.+.+.. .....++++.. +....... ....+....|++++...++...+...+++.. ..+. ...
T Consensus 29 ~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~---~~~ 102 (253)
T PF10647_consen 29 PAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT---GEP 102 (253)
T ss_pred eEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCc---cee
Confidence 34478888555555 23344555543 33333322 2236778899999887777776766676641 1111 010
Q ss_pred eeeeeeeeccccceEEEEEcCCCCEEEEEe---CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC
Q 013578 289 VTSVMQLKGHKSAVTWLCFAPNSEQIITAS---KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS 365 (440)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 365 (440)
.......-.+.|..+.+||||..++... .++.|.+=-+..... .....+..+..........+..++|.+
T Consensus 103 --~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~-----g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 103 --VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGD-----GVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred --EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCC-----CCcceeccceEecccccCcceeeeecC
Confidence 1111111112899999999999887665 356777766542211 101111112222222234578999999
Q ss_pred CCCEEEEec
Q 013578 366 DGKILAATH 374 (440)
Q Consensus 366 ~g~~l~~~~ 374 (440)
++.+++.+.
T Consensus 176 ~~~L~V~~~ 184 (253)
T PF10647_consen 176 DSTLVVLGR 184 (253)
T ss_pred CCEEEEEeC
Confidence 999888764
No 400
>PHA02790 Kelch-like protein; Provisional
Probab=96.22 E-value=0.67 Score=43.35 Aligned_cols=182 Identities=7% Similarity=0.003 Sum_probs=86.5
Q ss_pred EEEEeeCC-----ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCC--CEEEEEeEecCCCceeeeeeee
Q 013578 221 IIASCSEG-----TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTA--DVKVWEIVYSKDGLVKAVTSVM 293 (440)
Q Consensus 221 ~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~ 293 (440)
+++.|+.+ ..+..||..+++....-.............-++...++|+.++ .+..||.... .+..+.
T Consensus 274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n------~W~~~~ 347 (480)
T PHA02790 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDA------AWVNMP 347 (480)
T ss_pred EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCC------eEEECC
Confidence 56666654 3477788877654322211111111122234677888887643 4666764321 222222
Q ss_pred eeeccccceEEEEEcCCCCEEEEEeCCC---cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEE
Q 013578 294 QLKGHKSAVTWLCFAPNSEQIITASKDG---TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKIL 370 (440)
Q Consensus 294 ~~~~h~~~v~~~~~~p~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 370 (440)
.+.........+.+ +|+..+.|+.++ .+..||.++...... ...+. .... ..+..-+|++.
T Consensus 348 ~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~-----~~m~~---~r~~------~~~~~~~~~IY 411 (480)
T PHA02790 348 SLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFG-----PSTYY---PHYK------SCALVFGRRLF 411 (480)
T ss_pred CCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeC-----CCCCC---cccc------ceEEEECCEEE
Confidence 22211111222223 677777777553 466787765432110 00000 0011 11223456666
Q ss_pred EEecCCEEEEEEcCCcc--chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCC-----CeEEEEeCCCC
Q 013578 371 AATHGSTLQWLSVETGK--VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD-----KKVKLWLAPSL 437 (440)
Q Consensus 371 ~~~~~~~i~i~d~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D-----g~i~vw~~~~~ 437 (440)
+.| |.+.+||..+++ .+..+. ...... +++.. ++ .+.+.||.+ ..+.+||..+.
T Consensus 412 v~G--G~~e~ydp~~~~W~~~~~m~-~~r~~~-~~~v~-~~--------~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 412 LVG--RNAEFYCESSNTWTLIDDPI-YPRDNP-ELIIV-DN--------KLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred EEC--CceEEecCCCCcEeEcCCCC-CCcccc-EEEEE-CC--------EEEEECCcCCCcccceEEEEECCCC
Confidence 665 346778877654 233332 111122 23333 33 688888764 45778887764
No 401
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.20 E-value=0.8 Score=40.38 Aligned_cols=57 Identities=16% Similarity=0.259 Sum_probs=36.5
Q ss_pred CCCEEEEec-CCEEEEEEcCCccch---hhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEE
Q 013578 366 DGKILAATH-GSTLQWLSVETGKVL---DTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVK 430 (440)
Q Consensus 366 ~g~~l~~~~-~~~i~i~d~~~~~~~---~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~ 430 (440)
.|.++++.. .+.|....+..+..+ ..+.......+.+|++.||| .++++-+.+|.|.
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG--------~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG--------ALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS--------EEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC--------eEEEEECCCCeEe
Confidence 355666655 578888877644322 12223345589999999998 7888877888764
No 402
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.02 E-value=0.7 Score=39.72 Aligned_cols=61 Identities=13% Similarity=0.187 Sum_probs=32.4
Q ss_pred ccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEE
Q 013578 89 GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIV 154 (440)
Q Consensus 89 ~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~ 154 (440)
+-.+.+..+..++||+++++++.-....-|+--... +.. ........+.++.|.|++...+
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~---w~~--~~r~~~~riq~~gf~~~~~lw~ 202 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT---WQP--HNRNSSRRIQSMGFSPDGNLWM 202 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----EE--EE--SSS-EEEEEE-TTS-EEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc---ceE--EccCccceehhceecCCCCEEE
Confidence 334778888899999999888776666777754221 112 2223347788999998866444
No 403
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.98 E-value=0.26 Score=47.03 Aligned_cols=130 Identities=8% Similarity=0.151 Sum_probs=73.8
Q ss_pred eEEEEEcC--CCCEEEEEeCCCcEEEEecCccccccCCC----C--ccccccccccCCCCCeeeeeeEEeC--CCCCEEE
Q 013578 302 VTWLCFAP--NSEQIITASKDGTLRVWNINVRYHLDEDP----K--TLKVLPIPLLDSNGATLQYDRLSLS--SDGKILA 371 (440)
Q Consensus 302 v~~~~~~p--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~v~~~~~s--~~g~~l~ 371 (440)
|+.|.... +...|+.|..||.|.+|.++.-....... . ..+....|.... .-...+..+++. ...+++|
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEE
Confidence 55554433 45678999999999999875321100000 0 000000111111 112356778888 7888999
Q ss_pred EecC-CEEEEEEcCC--ccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578 372 ATHG-STLQWLSVET--GKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA 434 (440)
Q Consensus 372 ~~~~-~~i~i~d~~~--~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~ 434 (440)
++++ ..|.||-... .+....-...|...|.+|+|-++..... +. ..|++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~-G~-v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPN-GH-VKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCc-cc-eEEEEEeccCcEEEEEE
Confidence 9874 5666654433 2221111123666799999998751111 11 37888999999999887
No 404
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.95 E-value=0.061 Score=43.86 Aligned_cols=79 Identities=16% Similarity=0.208 Sum_probs=53.6
Q ss_pred cCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCc
Q 013578 308 APNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETG 386 (440)
Q Consensus 308 ~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~ 386 (440)
..++.+|++.+.+|.+++||+.+.+...........+.............|..+.++.+|.-+++-++|..+.|+..-+
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 3478899999999999999999887654332222222110011113455688899999999888877888888886544
No 405
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.85 E-value=0.71 Score=36.85 Aligned_cols=55 Identities=11% Similarity=0.168 Sum_probs=37.3
Q ss_pred EEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578 105 CLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC 163 (440)
Q Consensus 105 ~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~ 163 (440)
.|..+.....|.+|++........ .....-+.|..+.++..|+++++.-.+....
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~----~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~ 84 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLL----CTFSTVGRVLQLVYSEAGDYLVTLEEKNKRS 84 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCcee----EEEcchhheeEEEeccccceEEEEEeecCCc
Confidence 443334556799999985444322 2223338899999999999999987665444
No 406
>PHA02713 hypothetical protein; Provisional
Probab=95.73 E-value=0.58 Score=44.61 Aligned_cols=95 Identities=4% Similarity=-0.036 Sum_probs=49.6
Q ss_pred eEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCC------CEEEEEeEecCCCceeeeeeeeeeeccccceE
Q 013578 230 DISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTA------DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVT 303 (440)
Q Consensus 230 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~ 303 (440)
.+..||..+.+-...-.............-+++..+.|+.++ .+..||.... ..+..+..+........
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~-----~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTY-----NGWELITTTESRLSALH 507 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCC-----CCeeEccccCcccccce
Confidence 477788876643221111111112222233577777777542 3566776541 11333334433333333
Q ss_pred EEEEcCCCCEEEEEeCCC--cEEEEecCcc
Q 013578 304 WLCFAPNSEQIITASKDG--TLRVWNINVR 331 (440)
Q Consensus 304 ~~~~~p~~~~l~s~~~dg--~i~iwd~~~~ 331 (440)
.+.+ +++..++|+.|+ .+..||..+.
T Consensus 508 ~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 508 TILH--DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred eEEE--CCEEEEEeeecceeehhhcCcccc
Confidence 3333 678888999888 6667777654
No 407
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.67 E-value=0.079 Score=52.10 Aligned_cols=90 Identities=10% Similarity=-0.002 Sum_probs=57.3
Q ss_pred EEEEeeCCceEEEEeCCCCce-eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec-c
Q 013578 221 IIASCSEGTDISIWHGKTGKL-LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG-H 298 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-h 298 (440)
..+.+..|+.|++..+..... +..+. -....+|++|+|.|+.+++|...|++.-|....... . .+....- .
T Consensus 170 n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik---~---~ip~Pp~~e 242 (1405)
T KOG3630|consen 170 NSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK---S---EIPEPPVEE 242 (1405)
T ss_pred hhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeeccccee---e---cccCCCcCC
Confidence 456667788788876543222 22222 244678999999999999999999998887532210 0 0111100 1
Q ss_pred ccceEEEEEcCCCCEEEEE
Q 013578 299 KSAVTWLCFAPNSEQIITA 317 (440)
Q Consensus 299 ~~~v~~~~~~p~~~~l~s~ 317 (440)
...|.+|.|-....+++.-
T Consensus 243 ~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 243 NYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred CcceeEEEEecceeEEEEe
Confidence 4679999998777766544
No 408
>PHA03098 kelch-like protein; Provisional
Probab=95.67 E-value=1.1 Score=42.75 Aligned_cols=104 Identities=13% Similarity=0.042 Sum_probs=48.9
Q ss_pred EEEEeeCC------ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCC-----CEEEEEeEecCCCceeee
Q 013578 221 IIASCSEG------TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTA-----DVKVWEIVYSKDGLVKAV 289 (440)
Q Consensus 221 ~l~s~~~d------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~ 289 (440)
+++.|+.+ ..+..||..+.+....-.............-+++.++.|+.++ .+..||..... +
T Consensus 297 lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~------W 370 (534)
T PHA03098 297 IYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESK------W 370 (534)
T ss_pred EEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCc------e
Confidence 55555543 2477888877654322111111111122233677888887653 35566654322 2
Q ss_pred eeeeeeeccccceEEEEEcCCCCEEEEEeCC------CcEEEEecCccc
Q 013578 290 TSVMQLKGHKSAVTWLCFAPNSEQIITASKD------GTLRVWNINVRY 332 (440)
Q Consensus 290 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d------g~i~iwd~~~~~ 332 (440)
.....+........... -++..++.|+.+ ..+..||..+..
T Consensus 371 ~~~~~lp~~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 371 REEPPLIFPRYNPCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred eeCCCcCcCCccceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 12222211111111122 256666777632 357788887543
No 409
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.56 E-value=0.65 Score=45.24 Aligned_cols=79 Identities=20% Similarity=0.262 Sum_probs=54.0
Q ss_pred CeeeeeeEEeCCCCCEEEEecCCEEEEEEcCC----------ccc--h-h-------hhhccccCCeEEEEecCCCCCCC
Q 013578 354 ATLQYDRLSLSSDGKILAATHGSTLQWLSVET----------GKV--L-D-------TAEKAHEGEITCMAWAPKTIPMG 413 (440)
Q Consensus 354 ~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~----------~~~--~-~-------~~~~~h~~~v~~v~~~~~~~~~~ 413 (440)
....|..+.++|+|++||..+...|.|..+.. |+. . . .+...+...|..+.|+|.+
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s---- 158 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWS---- 158 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCC----
Confidence 34568899999999999986655555554421 111 0 0 0112345579999999985
Q ss_pred CCcceEEEEeeCCCeEEEEeCCCC
Q 013578 414 NQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 414 ~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
..+..|+.-.+|+++|+||+...
T Consensus 159 -~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 159 -ESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred -CCCCeEEEEecCCEEEEEecCCC
Confidence 33367888888999999999754
No 410
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.49 E-value=0.57 Score=42.06 Aligned_cols=148 Identities=16% Similarity=0.071 Sum_probs=72.0
Q ss_pred cccEEEecCCCCeEEEEe-----------cCC-CEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe
Q 013578 251 KNNMAAISPNGRFLAAAA-----------FTA-DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS 318 (440)
Q Consensus 251 ~v~~~~~s~~~~~l~~~~-----------~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~ 318 (440)
....++|.++|+++++-. ..+ .|.+++-.. .++.... ...+.........+++.+++ +++ ++
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~d-gdG~~d~---~~vfa~~l~~p~Gi~~~~~G-lyV-~~ 88 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDAD-GDGKYDK---SNVFAEELSMVTGLAVAVGG-VYV-AT 88 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCC-CCCCcce---eEEeecCCCCccceeEecCC-EEE-eC
Confidence 356788888888776643 122 566665322 1222211 12222223456889999988 444 44
Q ss_pred CCCcEEEEecCccccccCCCCccccccccccCC-CCCeeeeeeEEeCCCCCEEEE-ecC-------------------CE
Q 013578 319 KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDS-NGATLQYDRLSLSSDGKILAA-THG-------------------ST 377 (440)
Q Consensus 319 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~-~~~-------------------~~ 377 (440)
.....++.|......... ..+.+-...... ..+......++|.|||.+.++ ++. +.
T Consensus 89 ~~~i~~~~d~~gdg~ad~---~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~ 165 (367)
T TIGR02604 89 PPDILFLRDKDGDDKADG---EREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG 165 (367)
T ss_pred CCeEEEEeCCCCCCCCCC---ccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce
Confidence 443333435442211100 011110000000 011233567999999986654 321 34
Q ss_pred EEEEEcCCccchhhhhccccCCeEEEEecCCC
Q 013578 378 LQWLSVETGKVLDTAEKAHEGEITCMAWAPKT 409 (440)
Q Consensus 378 i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~ 409 (440)
|.-++..+++.. .+..+ -.....++|++++
T Consensus 166 i~r~~pdg~~~e-~~a~G-~rnp~Gl~~d~~G 195 (367)
T TIGR02604 166 LFRYNPDGGKLR-VVAHG-FQNPYGHSVDSWG 195 (367)
T ss_pred EEEEecCCCeEE-EEecC-cCCCccceECCCC
Confidence 555666554432 22122 2346789999987
No 411
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.42 E-value=0.95 Score=41.79 Aligned_cols=70 Identities=7% Similarity=0.164 Sum_probs=47.7
Q ss_pred cEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe-CCCcEEEEecC
Q 013578 253 NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS-KDGTLRVWNIN 329 (440)
Q Consensus 253 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~-~dg~i~iwd~~ 329 (440)
..+.|+|....|++-.....=.+++++.... +....+ ...+.|.|.+|.+||+.|+.+- ..=.-++||-.
T Consensus 116 QGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s------rVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 116 QGCVWHPKKAILTVLTARDVSVLPSVHCDSS------RVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CcccccCCCceEEEEecCceeEeeeeeeCCc------eEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 4578999999998887766656777765441 112223 3567899999999999876553 33346788754
No 412
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.40 E-value=0.75 Score=43.83 Aligned_cols=183 Identities=11% Similarity=0.137 Sum_probs=92.7
Q ss_pred EEEEeeCC------ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecC-C-----CEEEEEeEecCCCceee
Q 013578 221 IIASCSEG------TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFT-A-----DVKVWEIVYSKDGLVKA 288 (440)
Q Consensus 221 ~l~s~~~d------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g-----~i~i~d~~~~~~~~~~~ 288 (440)
+++.|+.+ ..+..||..+++..............-...-++..+++|+.| | .+..||.+..+
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~------ 360 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ------ 360 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCc------
Confidence 66666666 358888988774433222222122222223356888899988 3 35666665433
Q ss_pred eeeeeeeeccccceEEEEEcCCCCEEEEEeCCCc-----EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe
Q 013578 289 VTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGT-----LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL 363 (440)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 363 (440)
+..+..+...........+ +|...+.|+.||. |-.||..+...- ... +... . .. ..-..
T Consensus 361 W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~--------~va-~m~~-~--r~--~~gv~ 424 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWT--------PVA-PMLT-R--RS--GHGVA 424 (571)
T ss_pred eeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCccc--------ccC-CCCc-c--ee--eeEEE
Confidence 3333333333333222333 6888899998875 556766643221 100 0000 0 00 11222
Q ss_pred CCCCCEEEEec-C------CEEEEEEcCCccc--hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCe-----E
Q 013578 364 SSDGKILAATH-G------STLQWLSVETGKV--LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKK-----V 429 (440)
Q Consensus 364 s~~g~~l~~~~-~------~~i~i~d~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~-----i 429 (440)
.-+|++.+.|+ + ..+..||..+++- +..+. -...-..++.-.+ .+.+.||.|+. |
T Consensus 425 ~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~--~~R~~~g~a~~~~---------~iYvvGG~~~~~~~~~V 493 (571)
T KOG4441|consen 425 VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN--TRRSGFGVAVLNG---------KIYVVGGFDGTSALSSV 493 (571)
T ss_pred EECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcc--cccccceEEEECC---------EEEEECCccCCCccceE
Confidence 23566555543 2 4688899877653 22221 1111122444443 68888887763 5
Q ss_pred EEEeCCC
Q 013578 430 KLWLAPS 436 (440)
Q Consensus 430 ~vw~~~~ 436 (440)
..||..+
T Consensus 494 E~ydp~~ 500 (571)
T KOG4441|consen 494 ERYDPET 500 (571)
T ss_pred EEEcCCC
Confidence 5566654
No 413
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.35 E-value=0.68 Score=42.65 Aligned_cols=121 Identities=16% Similarity=0.274 Sum_probs=69.6
Q ss_pred cccceEEEEEcCC----CCEEEEEeCCCcEEEEecCccccccCCCCccccc----cccccCCCCCeeeeeeEEeCCCCCE
Q 013578 298 HKSAVTWLCFAPN----SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVL----PIPLLDSNGATLQYDRLSLSSDGKI 369 (440)
Q Consensus 298 h~~~v~~~~~~p~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~g~~ 369 (440)
.-..|.++.|.|- ...|...-....|.+|.+.....-....-..... +++.. -..+.|+|...+
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvL--------pQGCVWHPk~~i 126 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVL--------PQGCVWHPKKAI 126 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccC--------CCcccccCCCce
Confidence 3356899999994 3345566677899999986221100000000000 11111 124889999998
Q ss_pred EEEecCCEE-EEEEcCCc--cchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 370 LAATHGSTL-QWLSVETG--KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 370 l~~~~~~~i-~i~d~~~~--~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
|++=....+ .++++... +....+ ...+.|.|.+|.+||. ++++..|+.=.-+|||-.
T Consensus 127 L~VLT~~dvSV~~sV~~d~srVkaDi--~~~G~IhCACWT~DG~-------RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 127 LTVLTARDVSVLPSVHCDSSRVKADI--KTSGLIHCACWTKDGQ-------RLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEEecCceeEeeeeeeCCceEEEec--cCCceEEEEEecCcCC-------EEEEEeCCeEEEEEecCc
Confidence 887432222 34444333 233333 3667899999999983 555555666667888754
No 414
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.34 E-value=0.077 Score=29.76 Aligned_cols=31 Identities=23% Similarity=0.206 Sum_probs=26.3
Q ss_pred cceeEEEEccCC---CEEEEeeCCCcEEEEecCC
Q 013578 92 DSVTGLCFSSDG---KCLATACADGVIRVHKLDD 122 (440)
Q Consensus 92 ~~V~~l~~s~dg---~~l~t~s~dg~v~vW~~~~ 122 (440)
++|++++|||+. .+|+.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 579999999844 5888888889999999985
No 415
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.33 E-value=1.9 Score=38.16 Aligned_cols=98 Identities=14% Similarity=0.155 Sum_probs=47.1
Q ss_pred cccceEEEEEcCCCCEEEEEeCCC-----cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE
Q 013578 298 HKSAVTWLCFAPNSEQIITASKDG-----TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA 372 (440)
Q Consensus 298 h~~~v~~~~~~p~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 372 (440)
-..++..+.|+|....+++=|..| .-|||-+++... ..+. +... .....+..=-|.|||..|.-
T Consensus 186 ~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~------~~~~----v~~~-~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 186 DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS------NVKK----VHRR-MEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---------EE----SS----TTEEEEEEEE-TTSS-EEE
T ss_pred cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC------ccee----eecC-CCCcccccccccCCCCEEEE
Confidence 456788899999776666555433 236776653211 1111 1111 11234566779999996654
Q ss_pred -e-----cCCEEEEEEcCCccchhhhhccccCCeEEEEecCCC
Q 013578 373 -T-----HGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKT 409 (440)
Q Consensus 373 -~-----~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~ 409 (440)
+ .+..|.-+|..+++..... .......+--++|+
T Consensus 255 ~~~~~~~~~~~i~~~d~~t~~~~~~~---~~p~~~H~~ss~Dg 294 (386)
T PF14583_consen 255 DSYTPGGQDFWIAGYDPDTGERRRLM---EMPWCSHFMSSPDG 294 (386)
T ss_dssp EEEETTT--EEEEEE-TTT--EEEEE---EE-SEEEEEE-TTS
T ss_pred EeecCCCCceEEEeeCCCCCCceEEE---eCCceeeeEEcCCC
Confidence 2 1346777888887653322 22234455566776
No 416
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=95.22 E-value=3.8 Score=41.00 Aligned_cols=161 Identities=14% Similarity=0.175 Sum_probs=95.2
Q ss_pred CCCCcccEEEec---C----CCCeEEEEecCCCEEEEEeEecCC-------Cceeeeeeeeeeec---cccceEEEEEcC
Q 013578 247 TNQLKNNMAAIS---P----NGRFLAAAAFTADVKVWEIVYSKD-------GLVKAVTSVMQLKG---HKSAVTWLCFAP 309 (440)
Q Consensus 247 ~~~~~v~~~~~s---~----~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~~---h~~~v~~~~~~p 309 (440)
....+|..++|. . ..++|++- ....+.|+.....+. .......++..+.. ...+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 346678888887 2 22455554 456677777322221 01112223333332 234677899999
Q ss_pred -CCCEEEEEeCCCcEEEEecCccccccCC-CCccccccccc-cCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCc
Q 013578 310 -NSEQIITASKDGTLRVWNINVRYHLDED-PKTLKVLPIPL-LDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETG 386 (440)
Q Consensus 310 -~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~ 386 (440)
+...||.....|...||++......... ..........+ ... ........+.|.++-..|++++...+.++|+++.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~-~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDP-EELSNWKRILWVSDSNRLLVCNRSKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCC-cccCcceeeEecCCCCEEEEEcCCceEEEECCCC
Confidence 4568999999999999999322111110 00000000011 111 1123466899999999999999999999999988
Q ss_pred cchh-hhhccccCCeEEEEecCCC
Q 013578 387 KVLD-TAEKAHEGEITCMAWAPKT 409 (440)
Q Consensus 387 ~~~~-~~~~~h~~~v~~v~~~~~~ 409 (440)
.... .........|.++.-++..
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~ 258 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDN 258 (765)
T ss_pred CccchhccCCChhheeeEEecCCc
Confidence 7644 2223355678888888873
No 417
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.16 E-value=1.7 Score=36.56 Aligned_cols=171 Identities=15% Similarity=0.143 Sum_probs=97.8
Q ss_pred CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 013578 247 TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVW 326 (440)
Q Consensus 247 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iw 326 (440)
+....+.++.|+|+.+.|++......-.++=-..++ . -....+.+. .....|++..++.+.++--.++.+.++
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gd---l---irtiPL~g~-~DpE~Ieyig~n~fvi~dER~~~l~~~ 155 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGD---L---IRTIPLTGF-SDPETIEYIGGNQFVIVDERDRALYLF 155 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCc---e---EEEeccccc-CChhHeEEecCCEEEEEehhcceEEEE
Confidence 334458999999999999888776665555332222 1 012223332 223567777778877777788999988
Q ss_pred ecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCcc--chhhhhcccc------
Q 013578 327 NINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGK--VLDTAEKAHE------ 397 (440)
Q Consensus 327 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~--~~~~~~~~h~------ 397 (440)
.+......... ....++.............++|+|..+.|...- -+-+.||.+..+. ........+.
T Consensus 156 ~vd~~t~~~~~----~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f 231 (316)
T COG3204 156 TVDADTTVISA----KVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLF 231 (316)
T ss_pred EEcCCccEEec----cceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceE
Confidence 87754322111 111222333333355577899999988777765 3445555544222 1111111122
Q ss_pred -CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 398 -GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 398 -~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
..|.++.|++.. +.+|+-+.+++.+.-.+..
T Consensus 232 ~~DvSgl~~~~~~-------~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 232 VLDVSGLEFNAIT-------NSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred eeccccceecCCC-------CcEEEEecCCceEEEEecC
Confidence 246777888643 1577777777776665554
No 418
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.11 E-value=1.5 Score=39.15 Aligned_cols=101 Identities=13% Similarity=0.109 Sum_probs=70.5
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCE
Q 013578 298 HKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGST 377 (440)
Q Consensus 298 h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 377 (440)
..++|.++.|++|.+.||.--.|.+|.+++......... ...........|....|+.+ .-+|.-.+..
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~----------~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G 133 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE----------YTQECKTKNANILGFCWTSS-TEIAFITDQG 133 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH----------HHHHhccCcceeEEEEEecC-eeEEEEecCC
Confidence 457999999999999999999999999998843211110 01112222344777888877 5566666667
Q ss_pred EEEEEcCCccchhhhhccccCCeEEEEecCCC
Q 013578 378 LQWLSVETGKVLDTAEKAHEGEITCMAWAPKT 409 (440)
Q Consensus 378 i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~ 409 (440)
+.+|-....+.-.++.+.|...|+-..|+++.
T Consensus 134 ~e~y~v~pekrslRlVks~~~nvnWy~yc~et 165 (657)
T KOG2377|consen 134 IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPET 165 (657)
T ss_pred eEEEEEchhhhhhhhhhhcccCccEEEEcccc
Confidence 77777766554444446788899999999985
No 419
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=94.90 E-value=0.29 Score=38.37 Aligned_cols=36 Identities=22% Similarity=0.548 Sum_probs=29.3
Q ss_pred CeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 399 EITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 399 ~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
.|.+++|+|.| .+.....+|++...+|.|.||....
T Consensus 87 ~vv~~aWSP~G--l~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSG--LGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCC--CCCCCceEEEEEcCCCeEEEEecCC
Confidence 78999999987 3333347999999999999998764
No 420
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.89 E-value=0.8 Score=46.37 Aligned_cols=148 Identities=10% Similarity=0.167 Sum_probs=86.7
Q ss_pred ecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEE--------cCCCCEEEEEeCCCcEEEEecCccccccCCCC
Q 013578 268 AFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF--------APNSEQIITASKDGTLRVWNINVRYHLDEDPK 339 (440)
Q Consensus 268 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--------~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 339 (440)
+.|..+.+|+...+. ....+.+....|..+.. -|.=+++..-+.--.|.++-+.-.........
T Consensus 96 TiDn~L~lWny~~~~--------e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~ 167 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDN--------ELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSI 167 (1311)
T ss_pred EeCCeEEEEEcCCCC--------ccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccc
Confidence 458899999998754 34444454555555443 22223443333344567765543221111111
Q ss_pred ccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEE--EEEcCCc---c--------------c---hhhhhcccc
Q 013578 340 TLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQ--WLSVETG---K--------------V---LDTAEKAHE 397 (440)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~--i~d~~~~---~--------------~---~~~~~~~h~ 397 (440)
.... +........|.++....+|+.+.+|.||.|+ +|....| + . +..+...+.
T Consensus 168 f~~~-----~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~ 242 (1311)
T KOG1900|consen 168 FNTS-----FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSK 242 (1311)
T ss_pred cccc-----eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCC
Confidence 1111 1112234558899999999999999988554 2222222 0 0 111112467
Q ss_pred CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 398 GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 398 ~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
++|..++....- ..|.+-++.|+|++|++..
T Consensus 243 dpI~qi~ID~SR--------~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 243 DPIRQITIDNSR--------NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CcceeeEecccc--------ceeeeeccCceEEEEEccC
Confidence 799999998876 7889999999999999976
No 421
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.74 E-value=1.2 Score=32.62 Aligned_cols=119 Identities=13% Similarity=0.058 Sum_probs=66.9
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC--CCCEEEEecCCEEEEEEc
Q 013578 306 CFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS--DGKILAATHGSTLQWLSV 383 (440)
Q Consensus 306 ~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~~~~i~i~d~ 383 (440)
.|......|++++.-|.|.|++.......... ..-+............+.+-.|.| +...|+.|+...+..||+
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~----~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV 80 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGR----QDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDV 80 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCcccccccc----ccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEc
Confidence 45555557888888889999987654322111 111112222222222233334433 345888999999999999
Q ss_pred CCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 384 ETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 384 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
....-+..-+ -.+.|+++.+-.-+ .....+++.|| +..|.-||.+
T Consensus 81 ~~N~d~Fyke--~~DGvn~i~~g~~~----~~~~~l~ivGG-ncsi~Gfd~~ 125 (136)
T PF14781_consen 81 ENNSDLFYKE--VPDGVNAIVIGKLG----DIPSPLVIVGG-NCSIQGFDYE 125 (136)
T ss_pred ccCchhhhhh--CccceeEEEEEecC----CCCCcEEEECc-eEEEEEeCCC
Confidence 9887665432 34668888775332 11114556555 5555555443
No 422
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.50 E-value=1.7 Score=39.38 Aligned_cols=149 Identities=17% Similarity=0.096 Sum_probs=86.8
Q ss_pred CCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCC-------eEEEEecCCCEEEEEeEecCCCceee
Q 013578 216 ADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGR-------FLAAAAFTADVKVWEIVYSKDGLVKA 288 (440)
Q Consensus 216 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~l~~~~~dg~i~i~d~~~~~~~~~~~ 288 (440)
.+...++..+.....++-.|++.|+.+..+..+... -+.|.|+.+ .-++|-.+..|.-.|.+.... ...
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN--Ki~ 552 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN--KIK 552 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCC--cee
Confidence 344435556667777888999999999998877654 567777532 223444455555555543321 001
Q ss_pred eeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC
Q 013578 289 VTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK 368 (440)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 368 (440)
......+.+ .....|..- -...++|.+|..|-|++||--..... ...++-...|..+..+.+|+
T Consensus 553 v~esKdY~t-Kn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAK--------------talP~lG~aIk~idvta~Gk 616 (776)
T COG5167 553 VVESKDYKT-KNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAK--------------TALPGLGDAIKHIDVTANGK 616 (776)
T ss_pred eeeehhccc-ccccccccc-ccCceEEEecCCCceeeehhhcchhh--------------hcCcccccceeeeEeecCCc
Confidence 001111111 111222222 24558999999999999995422110 11122234467788999999
Q ss_pred EEEEecCCEEEEEEcC
Q 013578 369 ILAATHGSTLQWLSVE 384 (440)
Q Consensus 369 ~l~~~~~~~i~i~d~~ 384 (440)
++.+.....+.+-|+.
T Consensus 617 ~ilaTCk~yllL~d~~ 632 (776)
T COG5167 617 HILATCKNYLLLTDVP 632 (776)
T ss_pred EEEEeecceEEEEecc
Confidence 9988888878777763
No 423
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.26 E-value=0.19 Score=28.19 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=25.6
Q ss_pred cceEEEEEcCCC---CEEEEEeCCCcEEEEecCc
Q 013578 300 SAVTWLCFAPNS---EQIITASKDGTLRVWNINV 330 (440)
Q Consensus 300 ~~v~~~~~~p~~---~~l~s~~~dg~i~iwd~~~ 330 (440)
+.|.++.|+|+. .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 4788887889999999984
No 424
>PRK10115 protease 2; Provisional
Probab=94.21 E-value=6.2 Score=38.87 Aligned_cols=177 Identities=9% Similarity=-0.021 Sum_probs=83.7
Q ss_pred CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecC------CCEEEEEeEecCCCceeeeeeeeeeeccccc
Q 013578 228 GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFT------ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSA 301 (440)
Q Consensus 228 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~ 301 (440)
...|++.|+.+++.+...-... . ..++|.+|++.|+....+ ..|+.+++.+.... -..+. ......
T Consensus 152 ~~~l~v~d~~tg~~l~~~i~~~-~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~----d~lv~--~e~~~~ 223 (686)
T PRK10115 152 QYGIRFRNLETGNWYPELLDNV-E-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQ----DELVY--EEKDDT 223 (686)
T ss_pred EEEEEEEECCCCCCCCccccCc-c-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhH----CeEEE--eeCCCC
Confidence 3458888888776432221111 1 458999999877776543 23555555444211 11222 222222
Q ss_pred eE-EEEEcCCCCEEEEEe---CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec---
Q 013578 302 VT-WLCFAPNSEQIITAS---KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--- 374 (440)
Q Consensus 302 v~-~~~~~p~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--- 374 (440)
.. .+..+.++++++..+ .++.+.+++...... . ... ......+.. .. +. ...+.+++...
T Consensus 224 ~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~-----~-~~~---~~~~~~~~~--~~-~~-~~~~~ly~~tn~~~ 290 (686)
T PRK10115 224 FYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADA-----E-PFV---FLPRRKDHE--YS-LD-HYQHRFYLRSNRHG 290 (686)
T ss_pred EEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCC-----C-ceE---EEECCCCCE--EE-EE-eCCCEEEEEEcCCC
Confidence 22 333444777665443 345788888542110 0 000 000111111 11 11 22233333332
Q ss_pred -CCEEEEEEcCCccchhhhhccc-c-CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 375 -GSTLQWLSVETGKVLDTAEKAH-E-GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 375 -~~~i~i~d~~~~~~~~~~~~~h-~-~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
...|...++........+ ..+ . ..|..+.+..+ .++++...+|.-+++-++
T Consensus 291 ~~~~l~~~~~~~~~~~~~l-~~~~~~~~i~~~~~~~~---------~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 291 KNFGLYRTRVRDEQQWEEL-IPPRENIMLEGFTLFTD---------WLVVEERQRGLTSLRQIN 344 (686)
T ss_pred CCceEEEecCCCcccCeEE-ECCCCCCEEEEEEEECC---------EEEEEEEeCCEEEEEEEc
Confidence 234444454421112222 234 3 36888888855 577787778877766554
No 425
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.15 E-value=1.3 Score=44.23 Aligned_cols=146 Identities=10% Similarity=-0.028 Sum_probs=83.2
Q ss_pred CcccEEEecCCCCeEEEEec--CCCEEEEEeEecCCCceeeeeee---eeeeccccceEEEEEcCCCC-EEEEEeCCCcE
Q 013578 250 LKNNMAAISPNGRFLAAAAF--TADVKVWEIVYSKDGLVKAVTSV---MQLKGHKSAVTWLCFAPNSE-QIITASKDGTL 323 (440)
Q Consensus 250 ~~v~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~---~~~~~h~~~v~~~~~~p~~~-~l~s~~~dg~i 323 (440)
.++..+...+|+...++... +-.|..||++.-.........++ ...........++.|.|.-. ..+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 34556667778766655543 33688999864332111111111 11111223456788888543 35667788999
Q ss_pred EEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCc--cchhhhhccccCCe
Q 013578 324 RVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETG--KVLDTAEKAHEGEI 400 (440)
Q Consensus 324 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~--~~~~~~~~~h~~~v 400 (440)
++..+.......+ ...-....++++|+|.|+.++.|. +|.+.-|...-. ..+..........|
T Consensus 181 ~V~~~~~~~~~v~--------------s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrv 246 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVT--------------SFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRV 246 (1405)
T ss_pred hhhhhhhhhhhhc--------------ccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcce
Confidence 8887763221100 011123478999999999999997 677776654322 22222221224689
Q ss_pred EEEEecCCC
Q 013578 401 TCMAWAPKT 409 (440)
Q Consensus 401 ~~v~~~~~~ 409 (440)
.+|+|-...
T Consensus 247 l~v~Wl~t~ 255 (1405)
T KOG3630|consen 247 LSVTWLSTQ 255 (1405)
T ss_pred eEEEEecce
Confidence 999998775
No 426
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.10 E-value=4.1 Score=36.66 Aligned_cols=18 Identities=17% Similarity=0.505 Sum_probs=14.3
Q ss_pred cceeEEEEccCCCEEEEe
Q 013578 92 DSVTGLCFSSDGKCLATA 109 (440)
Q Consensus 92 ~~V~~l~~s~dg~~l~t~ 109 (440)
.....|+|.++|+++++-
T Consensus 14 ~~P~~ia~d~~G~l~V~e 31 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAE 31 (367)
T ss_pred CCCceeeECCCCCEEEEe
Confidence 456789999999877764
No 427
>PHA03098 kelch-like protein; Provisional
Probab=94.08 E-value=5.4 Score=38.10 Aligned_cols=95 Identities=14% Similarity=0.148 Sum_probs=44.3
Q ss_pred ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCC--------CEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578 229 TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTA--------DVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300 (440)
Q Consensus 229 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--------~i~i~d~~~~~~~~~~~~~~~~~~~~h~~ 300 (440)
..+..||..+++-...-..........+...++..++.|+.++ .+.+||....+ +..+..+.....
T Consensus 406 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~------W~~~~~~~~~r~ 479 (534)
T PHA03098 406 KTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK------WTELSSLNFPRI 479 (534)
T ss_pred ceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCc------eeeCCCCCcccc
Confidence 4588899876543221111111111122233566777776432 26777765432 112211111111
Q ss_pred ceEEEEEcCCCCEEEEEeCC-----CcEEEEecCcc
Q 013578 301 AVTWLCFAPNSEQIITASKD-----GTLRVWNINVR 331 (440)
Q Consensus 301 ~v~~~~~~p~~~~l~s~~~d-----g~i~iwd~~~~ 331 (440)
....+.+ ++..++.|+.+ ..|.+||..+.
T Consensus 480 ~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 480 NASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred cceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 1122222 66667777654 36777887754
No 428
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.97 E-value=3.5 Score=35.03 Aligned_cols=245 Identities=17% Similarity=0.211 Sum_probs=126.4
Q ss_pred ceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCc--cee-eEEecCC----CCCCCceEEEccCCCeEEEEeecCCcceE
Q 013578 93 SVTGLCFSSDGKCLATACADGVIRVHKLDDASSK--SFK-FLRINLP----PGGPPTAVAFADNATSIVVATHNLSGCSL 165 (440)
Q Consensus 93 ~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~--~~~-~~~~~~~----~~~~v~~v~~~~~~~~l~~~~~~~~~~~~ 165 (440)
.-+.|+++|.+.+-++...-+...+||....... ... ...+..+ ....++.+.|+....+.++....
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~------ 97 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI------ 97 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc------
Confidence 4578999999988888888899999998722111 111 1111111 12457777777665443332211
Q ss_pred EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce----
Q 013578 166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL---- 241 (440)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~---- 241 (440)
.+.-.++.+++||+|.-|...-+..
T Consensus 98 ---------------------------------------------------~~~a~Fif~tEdGTisaW~p~v~~t~~~~ 126 (336)
T TIGR03118 98 ---------------------------------------------------TGPSRFLFVTEDGTLSGWAPALGTTRMTR 126 (336)
T ss_pred ---------------------------------------------------ccceeEEEEeCCceEEeecCcCCcccccc
Confidence 0111578889999999998543222
Q ss_pred -eeeeeCC-CCc-ccEEEecC--CCCeEEEEe-cCCCEEEEEeEecCCC---ceeeee--------eeeeeeccccceEE
Q 013578 242 -LGNVDTN-QLK-NNMAAISP--NGRFLAAAA-FTADVKVWEIVYSKDG---LVKAVT--------SVMQLKGHKSAVTW 304 (440)
Q Consensus 242 -~~~~~~~-~~~-v~~~~~s~--~~~~l~~~~-~dg~i~i~d~~~~~~~---~~~~~~--------~~~~~~~h~~~v~~ 304 (440)
...+... ... -+.+++.. .+.+|+.+. ..++|.+||-...+.. ...... -+..+. ..--|+-
T Consensus 127 ~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig-~~lyVtY 205 (336)
T TIGR03118 127 AEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLG-GTLYVTY 205 (336)
T ss_pred cEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEEC-CeEEEEE
Confidence 1122211 122 23455543 356666664 5789999986543210 000000 000000 0001111
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC------CCCEEEEe-cCCE
Q 013578 305 LCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS------DGKILAAT-HGST 377 (440)
Q Consensus 305 ~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~g~~l~~~-~~~~ 377 (440)
..-.+++..=+.+..-|.|-+||+......+ ....+.-..-..|+..| .|.+|+.- .||.
T Consensus 206 A~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r-------------~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~ 272 (336)
T TIGR03118 206 AQQDADRNDEVAGAGLGYVNVFTLNGQLLRR-------------VASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGT 272 (336)
T ss_pred EecCCcccccccCCCcceEEEEcCCCcEEEE-------------eccCCcccCCceeeeChhhhCCCCCCeEEeecCCce
Confidence 1112222222233344678888876432110 01111112223455544 45666653 3999
Q ss_pred EEEEEcCCccchhhhhcccc-----CCeEEEEecCC
Q 013578 378 LQWLSVETGKVLDTAEKAHE-----GEITCMAWAPK 408 (440)
Q Consensus 378 i~i~d~~~~~~~~~~~~~h~-----~~v~~v~~~~~ 408 (440)
|..||..+|+.+..+..... ..++.++|...
T Consensus 273 InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGng 308 (336)
T TIGR03118 273 INAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGNG 308 (336)
T ss_pred eEEecCCCCceeeeecCCCCCeEEecCeEEeeeCCC
Confidence 99999999998777743222 35788888874
No 429
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.93 E-value=1.8 Score=44.26 Aligned_cols=68 Identities=13% Similarity=0.007 Sum_probs=42.4
Q ss_pred eeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 357 QYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 357 ~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
.+.+..+......+..+..+.+-+|+.........+...+ ..+.+++ ..++++..||.+..||...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--------~~~v~~h~Dgs~~fWd~s~ 265 (993)
T KOG1983|consen 200 ESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNG------QLESRDG--------SHFVSYHTDGSYAFWDVSS 265 (993)
T ss_pred ccceeeeecCCCcceeeeeeeeeehhcccccchhhccccc------ccCccCC--------ceEEEEEecCCEEeeecCC
Confidence 3444444445555555556666666655554444432111 1126666 8999999999999999988
Q ss_pred CC
Q 013578 437 LE 438 (440)
Q Consensus 437 ~~ 438 (440)
++
T Consensus 266 g~ 267 (993)
T KOG1983|consen 266 GK 267 (993)
T ss_pred Cc
Confidence 63
No 430
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.86 E-value=3.4 Score=39.56 Aligned_cols=50 Identities=20% Similarity=0.182 Sum_probs=36.7
Q ss_pred ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEe
Q 013578 229 TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVY 280 (440)
Q Consensus 229 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 280 (440)
-.|+||+.. |+.+..+.-....+-.+.|+.+.. |++...+|++++|++..
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLG 113 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecch
Confidence 348888865 777766654455778889987765 55667899999999853
No 431
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.75 E-value=7.1 Score=37.89 Aligned_cols=106 Identities=12% Similarity=0.265 Sum_probs=70.6
Q ss_pred CCeEEEEeeCCceEEEEeCCC-------C----c---------eeeeeeCCCCcccEEEec--CCCCeEEEEecCCCEEE
Q 013578 218 GSTIIASCSEGTDISIWHGKT-------G----K---------LLGNVDTNQLKNNMAAIS--PNGRFLAAAAFTADVKV 275 (440)
Q Consensus 218 ~~~~l~s~~~d~~i~vwd~~~-------~----~---------~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~i 275 (440)
+..+|+.|.+||.|.+|..++ . + +-..+.. ...+..++++ ...++||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcceEEEEecCCceEEE
Confidence 334899999999999996521 0 0 1111222 3356778888 78889999999999999
Q ss_pred EEeEecCCCceeeeeeeeeeeccccceEEEEEcCCC---C---EEEEEeCCCcEEEEecC
Q 013578 276 WEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS---E---QIITASKDGTLRVWNIN 329 (440)
Q Consensus 276 ~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~---~---~l~s~~~dg~i~iwd~~ 329 (440)
|-+....... ....-..|...|-+|+|-++. . +|++++-.|.+.+|++.
T Consensus 192 Faf~l~~~r~-----~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 192 FAFALVDERF-----YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEEecccccc-----ccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 8876532110 000011255678899997743 2 78889999999998883
No 432
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.74 E-value=3.1 Score=33.71 Aligned_cols=91 Identities=16% Similarity=0.201 Sum_probs=63.0
Q ss_pred ccccCCCCCeEEEEeeCCceEEEEe--CCCCce-----eeeeeC----CCCcccEEEecCCCCeEEEEecCCCEEEEEeE
Q 013578 211 ATYGTADGSTIIASCSEGTDISIWH--GKTGKL-----LGNVDT----NQLKNNMAAISPNGRFLAAAAFTADVKVWEIV 279 (440)
Q Consensus 211 ~~~~~~~~~~~l~s~~~d~~i~vwd--~~~~~~-----~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 279 (440)
...+..+.+.+.++-+.+-+|.-|| ..+|.. +..++. .......+++..+|++.++.-..++|...|..
T Consensus 162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~ 241 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPT 241 (310)
T ss_pred cccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCC
Confidence 3444556666777888888887777 555543 222322 11223456677788988888888999999998
Q ss_pred ecCCCceeeeeeeeeeeccccceEEEEEcC
Q 013578 280 YSKDGLVKAVTSVMQLKGHKSAVTWLCFAP 309 (440)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p 309 (440)
+++ .+.+++-....|+|++|--
T Consensus 242 tGK--------~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 242 TGK--------ILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCc--------EEEEEEcCCCceEEEEecC
Confidence 877 6666776788899999953
No 433
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.73 E-value=5 Score=36.10 Aligned_cols=160 Identities=13% Similarity=0.153 Sum_probs=72.2
Q ss_pred cCCCCCeEEEEee------CCceEEEEeCCCCceeeeeeCCCC---cccEEEecCCCCeEEEEe----------------
Q 013578 214 GTADGSTIIASCS------EGTDISIWHGKTGKLLGNVDTNQL---KNNMAAISPNGRFLAAAA---------------- 268 (440)
Q Consensus 214 ~~~~~~~~l~s~~------~d~~i~vwd~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~---------------- 268 (440)
+-|+|+ +++++- .-|.+.++|-++.+.......... --..+.|.|..+.+++..
T Consensus 137 clp~G~-imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~ 215 (461)
T PF05694_consen 137 CLPDGR-IMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDL 215 (461)
T ss_dssp E-SS---EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTH
T ss_pred ecCCcc-EEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHh
Confidence 356776 555542 224588889888887777654322 234577888888888763
Q ss_pred ----cCCCEEEEEeEecCCCceeeeeeeeeeecc--ccceEEEEEc--CCCCE-EEEEeCCCcEEEEec-CccccccCCC
Q 013578 269 ----FTADVKVWEIVYSKDGLVKAVTSVMQLKGH--KSAVTWLCFA--PNSEQ-IITASKDGTLRVWNI-NVRYHLDEDP 338 (440)
Q Consensus 269 ----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~--p~~~~-l~s~~~dg~i~iwd~-~~~~~~~~~~ 338 (440)
...++.+||+...+ .++++.-. ......+.|. |+..+ ++.+.-..+|..|-- +.+...
T Consensus 216 ~~~~yG~~l~vWD~~~r~--------~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~---- 283 (461)
T PF05694_consen 216 EAGKYGHSLHVWDWSTRK--------LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWA---- 283 (461)
T ss_dssp HHH-S--EEEEEETTTTE--------EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEE----
T ss_pred hcccccCeEEEEECCCCc--------EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCee----
Confidence 23569999996654 33333322 2235566664 44444 333334445554433 222110
Q ss_pred CccccccccccC------------CCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcCCcc
Q 013578 339 KTLKVLPIPLLD------------SNGATLQYDRLSLSSDGKILAATH--GSTLQWLSVETGK 387 (440)
Q Consensus 339 ~~~~~~~~~~~~------------~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~~~~ 387 (440)
..+.+.++... ...-..-++.+.+|.|.++|.++. .|.|+-||+....
T Consensus 284 -a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 284 -AEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp -EEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred -eeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 00111111110 111123478899999999999875 8999999997653
No 434
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.63 E-value=2.6 Score=41.30 Aligned_cols=87 Identities=13% Similarity=0.300 Sum_probs=52.6
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEecCccc----cccCCCCcc--cccccc-ccCCCCCeeeeeeEEeCCCC---C-
Q 013578 300 SAVTWLCFAPNSEQIITASKDGTLRVWNINVRY----HLDEDPKTL--KVLPIP-LLDSNGATLQYDRLSLSSDG---K- 368 (440)
Q Consensus 300 ~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~--~~~~~~-~~~~~~~~~~v~~~~~s~~g---~- 368 (440)
-.|..|.++|+|.+|+..|..| |.|-.+.... ......... +.+++. .+........|..+.|+|.+ .
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3588899999999999888754 4554443210 000001111 111111 11223445679999999974 4
Q ss_pred EEEEecCCEEEEEEcCCcc
Q 013578 369 ILAATHGSTLQWLSVETGK 387 (440)
Q Consensus 369 ~l~~~~~~~i~i~d~~~~~ 387 (440)
+++-.+|+.+++||+...+
T Consensus 164 l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEecCCEEEEEecCCCC
Confidence 5555889999999997543
No 435
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.60 E-value=0.48 Score=45.82 Aligned_cols=165 Identities=16% Similarity=0.260 Sum_probs=82.0
Q ss_pred cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC---CCCEEEEEeCCCcEEEEecCccccccCCCCcccccc
Q 013578 269 FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP---NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLP 345 (440)
Q Consensus 269 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 345 (440)
.-|.+.+||+..-. |.....-.+.........+.-+.|.| +.-++..+-.+++|++..++.........+..+...
T Consensus 151 ~vg~lfVy~vd~l~-G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d 229 (1283)
T KOG1916|consen 151 LVGELFVYDVDVLQ-GEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTD 229 (1283)
T ss_pred HhhhhheeehHhhc-cccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCccc
Confidence 34678899986532 22222222333333333444455554 666777777888988877654322100001111111
Q ss_pred ccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEc-----CCccchhhhhccccC-CeEEEEecCCC-CCCCCCcc
Q 013578 346 IPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSV-----ETGKVLDTAEKAHEG-EITCMAWAPKT-IPMGNQQV 417 (440)
Q Consensus 346 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~-----~~~~~~~~~~~~h~~-~v~~v~~~~~~-~~~~~~~~ 417 (440)
...+...- +.--.+||||+.+|.. .||.+++|-+ ...+++... +.|++ +-.|.-|+... .....+.-
T Consensus 230 ~a~~~~g~----~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhew-kphd~~p~vC~lc~~~~~~~v~i~~w 304 (1283)
T KOG1916|consen 230 MAFFAEGV----LKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEW-KPHDKHPRVCWLCHKQEILVVSIGKW 304 (1283)
T ss_pred HHHHhhch----hhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhcc-CCCCCCCceeeeeccccccCCcccee
Confidence 11111110 1113389999999874 5887776654 333444444 46763 33333344332 11122333
Q ss_pred eEEEEeeC-CCeEEEEeCCCCCC
Q 013578 418 SVLATSSV-DKKVKLWLAPSLES 439 (440)
Q Consensus 418 ~~l~t~~~-Dg~i~vw~~~~~~~ 439 (440)
.++++++. ...+++|.-...+|
T Consensus 305 ~~~Itttd~nre~k~w~~a~w~C 327 (1283)
T KOG1916|consen 305 VLRITTTDVNREEKFWAEAPWQC 327 (1283)
T ss_pred EEEEecccCCcceeEeeccchhh
Confidence 45666655 56699998766554
No 436
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.43 E-value=0.66 Score=25.91 Aligned_cols=41 Identities=17% Similarity=0.282 Sum_probs=29.2
Q ss_pred CCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEe
Q 013578 216 ADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAI 257 (440)
Q Consensus 216 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 257 (440)
|+++.++++...++.|.++|..+++.+..+..... ...++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~-P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGY-PFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCC-CceEEe
Confidence 45665677777789999999999988888776432 334444
No 437
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.34 E-value=6 Score=35.81 Aligned_cols=115 Identities=10% Similarity=0.053 Sum_probs=66.0
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEE
Q 013578 299 KSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTL 378 (440)
Q Consensus 299 ~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i 378 (440)
...+.++.+.+++..++++ .+|.+.. ....+.. .................+..+.|.+++..+++|..|.+
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~-------~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v 350 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLT-------EEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGIL 350 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCc-------ccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcE
Confidence 4568899999998876655 5566543 3222210 00000000011111234778999999999999998877
Q ss_pred EEEEcCCccchhhhh--ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEE
Q 013578 379 QWLSVETGKVLDTAE--KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432 (440)
Q Consensus 379 ~i~d~~~~~~~~~~~--~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw 432 (440)
.... ..|+.-.... ..-....+.+.|.+++ .....+.+|.|.-|
T Consensus 351 ~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~---------~g~~~G~~G~il~~ 396 (398)
T PLN00033 351 LRST-DGGKSWKRDKGADNIAANLYSVKFFDDK---------KGFVLGNDGVLLRY 396 (398)
T ss_pred EEeC-CCCcceeEccccCCCCcceeEEEEcCCC---------ceEEEeCCcEEEEe
Confidence 6653 3333322211 1234578899998774 45555678887665
No 438
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.33 E-value=0.02 Score=50.74 Aligned_cols=142 Identities=15% Similarity=0.217 Sum_probs=95.9
Q ss_pred EEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEE-EEeCCCcEEEEecCccc
Q 013578 254 MAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII-TASKDGTLRVWNINVRY 332 (440)
Q Consensus 254 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~-s~~~dg~i~iwd~~~~~ 332 (440)
...|-+.+.-++.++.+..+..||-... ...... ..+....++|.-++..++ .+-..+.+.+||+.+..
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq---------~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey 108 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQ---------VILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY 108 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcc---------eecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhh
Confidence 4567777777888888888888884211 111111 334556788888777654 44567899999998643
Q ss_pred cccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCC
Q 013578 333 HLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411 (440)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 411 (440)
-.+ ......+... -+.|++.+..++.+. .+.+.+|+..+.+..... ..|...+++++|.+.+
T Consensus 109 tqq------------LE~gg~~s~s--ll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~-Gkh~RRgtq~av~lEd-- 171 (615)
T KOG2247|consen 109 TQQ------------LESGGTSSKS--LLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM-GKHQRRGTQIAVTLED-- 171 (615)
T ss_pred HHH------------HhccCcchHH--HHhhccCCccccccccccceEEEeccchhhhhhh-cccccceeEEEecccc--
Confidence 211 0111111111 278999999888876 789999999888777665 3499999999999985
Q ss_pred CCCCcceEEEEeeCCCeE
Q 013578 412 MGNQQVSVLATSSVDKKV 429 (440)
Q Consensus 412 ~~~~~~~~l~t~~~Dg~i 429 (440)
+.+.++.|..+
T Consensus 172 -------~vil~dcd~~L 182 (615)
T KOG2247|consen 172 -------YVILCDCDNTL 182 (615)
T ss_pred -------eeeecCcHHHH
Confidence 77777766543
No 439
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.85 E-value=9.5 Score=36.74 Aligned_cols=173 Identities=17% Similarity=0.134 Sum_probs=83.8
Q ss_pred cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC 163 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~ 163 (440)
+..+....+.+-.+.|+.+. .|+.-..||++.||++-....... ..........|..+.|..+|-.+++.++.
T Consensus 76 L~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~--svg~e~~~~~I~ec~~f~~GVavlt~~g~---- 148 (829)
T KOG2280|consen 76 LGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESN--SVGFESQMSDIVECRFFHNGVAVLTVSGQ---- 148 (829)
T ss_pred hHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhccc--ccccccccCceeEEEEecCceEEEecCCc----
Confidence 33333334589999999765 566678999999999865432211 00111122446666666666655555433
Q ss_pred eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC-cee
Q 013578 164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG-KLL 242 (440)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~~~ 242 (440)
.+.+.+.+..........+. ...+...|.....+....+ .+...-..+ ..++..... ...
T Consensus 149 v~~i~~~~~~~~~~~~diP~-~~~~~~~Wt~~~~~~~~~~-----------------ll~v~~~v~-~~~~q~~~~~~q~ 209 (829)
T KOG2280|consen 149 VILINGVEEPKLRKMPDIPY-NELPKSCWTVFQPHRQSTI-----------------LLDVDVAVG-LHICQVEESRVQL 209 (829)
T ss_pred EEEEcCCCcchhhhCCCCCC-ccCCCcceeEecCCCccee-----------------EEeechhhh-hcccceecccccc
Confidence 33333333221111111000 0011123332222111110 011100111 111211111 112
Q ss_pred eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecC
Q 013578 243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSK 282 (440)
Q Consensus 243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 282 (440)
..+......+..+.+||+.++|+-=...|.|.+-+.+..+
T Consensus 210 ~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~ 249 (829)
T KOG2280|consen 210 HALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQ 249 (829)
T ss_pred cccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhh
Confidence 2233333567788999999999999999999988876544
No 440
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.78 E-value=6.5 Score=34.67 Aligned_cols=176 Identities=13% Similarity=0.172 Sum_probs=90.4
Q ss_pred CcccEEEecCCCCeEEEEecCCC------EEEEEeEecCCC-ceeeeeeeeeeecccc--------ceEEEEEcCCCCEE
Q 013578 250 LKNNMAAISPNGRFLAAAAFTAD------VKVWEIVYSKDG-LVKAVTSVMQLKGHKS--------AVTWLCFAPNSEQI 314 (440)
Q Consensus 250 ~~v~~~~~s~~~~~l~~~~~dg~------i~i~d~~~~~~~-~~~~~~~~~~~~~h~~--------~v~~~~~~p~~~~l 314 (440)
+..+.+.+.+++..+++.+.+|. ++.+++...... ..........+..-.+ ..-+|++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 44677888876666777777777 666666542110 0011111222222222 34478887788877
Q ss_pred EEEeCC------CcEEEEecCccccccCCCCcccccccccc--CCCCCeeeeeeEEeCCCCCEEEEe------cCC--E-
Q 013578 315 ITASKD------GTLRVWNINVRYHLDEDPKTLKVLPIPLL--DSNGATLQYDRLSLSSDGKILAAT------HGS--T- 377 (440)
Q Consensus 315 ~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~~~------~~~--~- 377 (440)
++.-.+ ..|+.++.. +........ ...+..... ........+-.++++|+|+.|.+. .|+ .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~v-P~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPV-PAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEcc-ccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 777666 778888866 322211100 000000000 222334457789999999944432 122 1
Q ss_pred ------EEE--EEcCC-ccc----hhhhhc----cccCCeEEEEecCCCCCCCCCcceEEEEee-----CCCeEEEEeCC
Q 013578 378 ------LQW--LSVET-GKV----LDTAEK----AHEGEITCMAWAPKTIPMGNQQVSVLATSS-----VDKKVKLWLAP 435 (440)
Q Consensus 378 ------i~i--~d~~~-~~~----~~~~~~----~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~-----~Dg~i~vw~~~ 435 (440)
+++ ||..+ ++. ...+.. .....|..+.+-+++ ++|+-=- ....++|+.+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~--------~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDG--------RLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCC--------cEEEEEccCCCCccceEEEEEEE
Confidence 444 55554 322 222210 034578999999987 5555322 23456666554
No 441
>PRK10115 protease 2; Provisional
Probab=92.73 E-value=11 Score=37.21 Aligned_cols=60 Identities=15% Similarity=0.173 Sum_probs=37.7
Q ss_pred cceeEEEEccCCCEEEEeeC-----CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEee
Q 013578 92 DSVTGLCFSSDGKCLATACA-----DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATH 158 (440)
Q Consensus 92 ~~V~~l~~s~dg~~l~t~s~-----dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~ 158 (440)
-.+..+.+||||++|+.+.. ...|++-|+.++... ..... ..-..++|.+|++.|+....
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l-----~~~i~--~~~~~~~w~~D~~~~~y~~~ 191 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY-----PELLD--NVEPSFVWANDSWTFYYVRK 191 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC-----Ccccc--CcceEEEEeeCCCEEEEEEe
Confidence 45778899999998886532 235778888765311 11111 11146899998887776654
No 442
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=92.71 E-value=2.9 Score=34.70 Aligned_cols=152 Identities=16% Similarity=0.173 Sum_probs=76.4
Q ss_pred EEEEeCCCCceeeeeeCC-CCcccEEEecCCCCeEEEEec-C--CCEEEEEeEecCCCceeeeeee-eeeeccccceEEE
Q 013578 231 ISIWHGKTGKLLGNVDTN-QLKNNMAAISPNGRFLAAAAF-T--ADVKVWEIVYSKDGLVKAVTSV-MQLKGHKSAVTWL 305 (440)
Q Consensus 231 i~vwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~-~~~~~h~~~v~~~ 305 (440)
-.+||+.+++.. .+... ..-...-.+-+||++|.+|+. + ..+++++..... .. ..+... ..+. ...+--+.
T Consensus 48 s~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~-~~-~~w~e~~~~m~-~~RWYpT~ 123 (243)
T PF07250_consen 48 SVEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSD-GT-CDWTESPNDMQ-SGRWYPTA 123 (243)
T ss_pred EEEEecCCCcEE-eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCC-CC-CCceECccccc-CCCccccc
Confidence 457898887653 22221 111223357789999999875 2 347777753301 00 011111 1111 22344455
Q ss_pred EEcCCCCEEEEEeCCC-cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcC
Q 013578 306 CFAPNSEQIITASKDG-TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVE 384 (440)
Q Consensus 306 ~~~p~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~ 384 (440)
..-|||+.|+.|+.+. +..+|.-+.... .......+.. ............+...|+|++++.+..+ -.|||..
T Consensus 124 ~~L~DG~vlIvGG~~~~t~E~~P~~~~~~---~~~~~~~l~~--~~~~~~~nlYP~~~llPdG~lFi~an~~-s~i~d~~ 197 (243)
T PF07250_consen 124 TTLPDGRVLIVGGSNNPTYEFWPPKGPGP---GPVTLPFLSQ--TSDTLPNNLYPFVHLLPDGNLFIFANRG-SIIYDYK 197 (243)
T ss_pred eECCCCCEEEEeCcCCCcccccCCccCCC---Cceeeecchh--hhccCccccCceEEEcCCCCEEEEEcCC-cEEEeCC
Confidence 6678999998888763 233443321100 0000000000 0001111223357888999999888754 3466888
Q ss_pred Cccchhhh
Q 013578 385 TGKVLDTA 392 (440)
Q Consensus 385 ~~~~~~~~ 392 (440)
+.+.+..+
T Consensus 198 ~n~v~~~l 205 (243)
T PF07250_consen 198 TNTVVRTL 205 (243)
T ss_pred CCeEEeeC
Confidence 87765544
No 443
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.15 E-value=9 Score=34.84 Aligned_cols=26 Identities=31% Similarity=0.616 Sum_probs=20.2
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecC
Q 013578 304 WLCFAPNSEQIITASKDGTLRVWNIN 329 (440)
Q Consensus 304 ~~~~~p~~~~l~s~~~dg~i~iwd~~ 329 (440)
.+.|.|.-..|++++.+..+.-|...
T Consensus 179 Pl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 179 PLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred CeEEeecCCEEEEecCceeEEEecHH
Confidence 45677777788899888888888764
No 444
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=91.83 E-value=8.6 Score=35.39 Aligned_cols=61 Identities=10% Similarity=0.077 Sum_probs=36.2
Q ss_pred CcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCC
Q 013578 250 LKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS 311 (440)
Q Consensus 250 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 311 (440)
.....++|.|+|++|++--..|+|++++-.............+. .....+....|+++|+-
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~-~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIV-NDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCcee-ccCCCCceeeEEECCCc
Confidence 34678999999987766654699998874332210000010111 11135678999999974
No 445
>PRK13684 Ycf48-like protein; Provisional
Probab=91.80 E-value=8.8 Score=33.97 Aligned_cols=157 Identities=15% Similarity=0.124 Sum_probs=86.1
Q ss_pred CCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEec
Q 013578 249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNI 328 (440)
Q Consensus 249 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~ 328 (440)
...+..+.+.+++.+++++ ..|.+..- .+.+. ..+..+ ...-...++++.+.|+++.++.+ ..|.+++=..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s-~~~gg----~tW~~~--~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYST-WEPGQ----TAWTPH--QRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEE-cCCCC----CeEEEe--eCCCcccceeeeEcCCCCEEEEe-cCCEEEEccC
Confidence 3457788889988766555 45654421 11111 112122 12334678999999998876655 5576653222
Q ss_pred CccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhh--ccccCCeEEEEec
Q 013578 329 NVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAE--KAHEGEITCMAWA 406 (440)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~--~~h~~~v~~v~~~ 406 (440)
..+. .......+. ......+..+.+.+++.+++++.+|.+.. ....|+.-.... ..-....+.+.|.
T Consensus 243 d~G~-------sW~~~~~~~---~~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~ 311 (334)
T PRK13684 243 DDLE-------SWSKPIIPE---ITNGYGYLDLAYRTPGEIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFL 311 (334)
T ss_pred CCCC-------ccccccCCc---cccccceeeEEEcCCCCEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEe
Confidence 2221 111111000 01123466789999999999988887664 344444332221 1122357788887
Q ss_pred CCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578 407 PKTIPMGNQQVSVLATSSVDKKVKLWLA 434 (440)
Q Consensus 407 ~~~~~~~~~~~~~l~t~~~Dg~i~vw~~ 434 (440)
.++ .. +..+..|.|..|+-
T Consensus 312 ~~~--------~~-~~~G~~G~il~~~~ 330 (334)
T PRK13684 312 DPE--------KG-FVLGQRGVLLRYVG 330 (334)
T ss_pred CCC--------ce-EEECCCceEEEecC
Confidence 664 44 44566898887764
No 446
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=91.66 E-value=9.4 Score=34.00 Aligned_cols=74 Identities=14% Similarity=0.070 Sum_probs=39.9
Q ss_pred ccccccCCCCCeEEEEeeCCce--EEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecC
Q 013578 209 ASATYGTADGSTIIASCSEGTD--ISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSK 282 (440)
Q Consensus 209 ~~~~~~~~~~~~~l~s~~~d~~--i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 282 (440)
...-.+.++|+.+|+.+..|+. +.+.|+.+++..+.-...........++++.+.++....+..++-.|+.+.+
T Consensus 38 F~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e 113 (386)
T PF14583_consen 38 FYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE 113 (386)
T ss_dssp TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--
T ss_pred ecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc
Confidence 3334457889878887766654 7777888887765554433333356778888887766556677777765543
No 447
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.53 E-value=1.3 Score=36.18 Aligned_cols=75 Identities=21% Similarity=0.283 Sum_probs=50.9
Q ss_pred EEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee-------ccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578 255 AAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK-------GHKSAVTWLCFAPNSEQIITASKDGTLRVWN 327 (440)
Q Consensus 255 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd 327 (440)
+.+..++++|++-+.+|.+++||+...+..... ......+. .....|..+.++.+|.-|++-+ +|..+.|+
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPP-VSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCC-ccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence 345567889999999999999999766521110 00000111 3556789999998898777765 57889998
Q ss_pred cCcc
Q 013578 328 INVR 331 (440)
Q Consensus 328 ~~~~ 331 (440)
..-+
T Consensus 94 ~~L~ 97 (219)
T PF07569_consen 94 PDLG 97 (219)
T ss_pred cccc
Confidence 7643
No 448
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.52 E-value=11 Score=34.35 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=33.7
Q ss_pred ccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCC
Q 013578 85 NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDAS 124 (440)
Q Consensus 85 ~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~ 124 (440)
..|......+.+++.+|++++.|+...=|.|.++|+..+.
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~ 340 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGI 340 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCCh
Confidence 4566677789999999999999988777999999998764
No 449
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=91.44 E-value=7.9 Score=32.72 Aligned_cols=146 Identities=8% Similarity=-0.003 Sum_probs=82.1
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~ 300 (440)
+++.+..+.-+++.|+.+.+.-..+..-...-..-.|.-.|++..++..|.-+.+.|+....+.. ..........
T Consensus 98 yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~-----lagrya~~~~ 172 (370)
T COG5276 98 YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQ-----LAGRYALPGG 172 (370)
T ss_pred EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCce-----eeeeeccCCC
Confidence 55555566669999998764322221111111223344568999999877778889987665322 2222333333
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEE
Q 013578 301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQW 380 (440)
Q Consensus 301 ~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i 380 (440)
.-..++.| |++-..+..|+-+.+-|+...... ..... . .....+..+..+++.-+++....|. .+
T Consensus 173 d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sP----vli~~-----~---n~g~g~~sv~vsdnr~y~vvy~egv-li 237 (370)
T COG5276 173 DTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSP----VLIGS-----Y---NTGPGTYSVSVSDNRAYLVVYDEGV-LI 237 (370)
T ss_pred CceeEEEe--cCeEEEEEeCCCeEEEEccCCCCC----eEEEE-----E---ecCCceEEEEecCCeeEEEEcccce-EE
Confidence 33556664 667777788999999999854321 11110 0 0111356677777777777655443 33
Q ss_pred EEcCCc
Q 013578 381 LSVETG 386 (440)
Q Consensus 381 ~d~~~~ 386 (440)
-|..+.
T Consensus 238 vd~s~~ 243 (370)
T COG5276 238 VDVSGP 243 (370)
T ss_pred EecCCC
Confidence 444433
No 450
>PRK13684 Ycf48-like protein; Provisional
Probab=91.19 E-value=4.8 Score=35.59 Aligned_cols=108 Identities=9% Similarity=0.172 Sum_probs=62.2
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEE-EecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCE
Q 013578 299 KSAVTWLCFAPNSEQIITASKDGTLRV-WNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGST 377 (440)
Q Consensus 299 ~~~v~~~~~~p~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 377 (440)
.+.+.++.+.|++.+++++. .|.+.. +|-. + ...... .......+..+.+.++++.++++..|.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~g-g-------~tW~~~------~~~~~~~l~~i~~~~~g~~~~vg~~G~ 236 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPG-Q-------TAWTPH------QRNSSRRLQSMGFQPDGNLWMLARGGQ 236 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCCC-C-------CeEEEe------eCCCcccceeeeEcCCCCEEEEecCCE
Confidence 45688899999887665554 455442 2211 0 001000 012234577899999999999988887
Q ss_pred EEEEEcCCccchhhhhcc---ccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEE
Q 013578 378 LQWLSVETGKVLDTAEKA---HEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVK 430 (440)
Q Consensus 378 i~i~d~~~~~~~~~~~~~---h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~ 430 (440)
+++=....|+.-.....+ -...+.++.+.+++ . ++.++.+|.+.
T Consensus 237 ~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~--------~-~~~~G~~G~v~ 283 (334)
T PRK13684 237 IRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPG--------E-IWAGGGNGTLL 283 (334)
T ss_pred EEEccCCCCCccccccCCccccccceeeEEEcCCC--------C-EEEEcCCCeEE
Confidence 764334444432222111 22357889999875 4 44555677554
No 451
>PHA02790 Kelch-like protein; Provisional
Probab=91.08 E-value=14 Score=34.80 Aligned_cols=100 Identities=9% Similarity=0.011 Sum_probs=47.1
Q ss_pred EEEEeeCC---ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec
Q 013578 221 IIASCSEG---TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG 297 (440)
Q Consensus 221 ~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 297 (440)
+.+.|+.+ ..+..||..+.+-...-..........+..-+++..+.| |.+.+||.... .+..+..+..
T Consensus 365 IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~------~W~~~~~m~~ 435 (480)
T PHA02790 365 IYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESSN------TWTLIDDPIY 435 (480)
T ss_pred EEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCCC------cEeEcCCCCC
Confidence 55555543 346778877654332111111111112223456666666 35677876432 2323333322
Q ss_pred cccceEEEEEcCCCCEEEEEeCC-----CcEEEEecCcc
Q 013578 298 HKSAVTWLCFAPNSEQIITASKD-----GTLRVWNINVR 331 (440)
Q Consensus 298 h~~~v~~~~~~p~~~~l~s~~~d-----g~i~iwd~~~~ 331 (440)
.......+.+ +++..+.|+.+ ..|..||..+.
T Consensus 436 ~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 436 PRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CccccEEEEE--CCEEEEECCcCCCcccceEEEEECCCC
Confidence 2222222333 67777777754 34666776643
No 452
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=91.08 E-value=21 Score=37.03 Aligned_cols=15 Identities=20% Similarity=0.169 Sum_probs=11.5
Q ss_pred cccCCeEEEEecCCC
Q 013578 395 AHEGEITCMAWAPKT 409 (440)
Q Consensus 395 ~h~~~v~~v~~~~~~ 409 (440)
+|-..+.+++.+||+
T Consensus 659 A~lnsp~alaVsPdg 673 (1899)
T KOG4659|consen 659 AKLNSPYALAVSPDG 673 (1899)
T ss_pred cccCCcceEEECCCC
Confidence 456678888888887
No 453
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.02 E-value=0.045 Score=48.62 Aligned_cols=93 Identities=13% Similarity=0.188 Sum_probs=62.1
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeC-CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccc
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDT-NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK 299 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~ 299 (440)
.++.+-..+.+.+||+.+... .++.. ....-.-+.|++.+..++.+...|.+.||+..... .......|.
T Consensus 89 lavlAek~~piylwd~n~eyt-qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR--------~iiv~Gkh~ 159 (615)
T KOG2247|consen 89 LAVLAEKTGPIYLWDVNSEYT-QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSR--------RIIVMGKHQ 159 (615)
T ss_pred hhhhhhcCCCeeechhhhhhH-HHHhccCcchHHHHhhccCCccccccccccceEEEeccchh--------hhhhhcccc
Confidence 444555667799999875432 22221 12222336899999999999999999999976554 344444489
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcE
Q 013578 300 SAVTWLCFAPNSEQIITASKDGTL 323 (440)
Q Consensus 300 ~~v~~~~~~p~~~~l~s~~~dg~i 323 (440)
..++++++.+.+. .+.++.|..+
T Consensus 160 RRgtq~av~lEd~-vil~dcd~~L 182 (615)
T KOG2247|consen 160 RRGTQIAVTLEDY-VILCDCDNTL 182 (615)
T ss_pred cceeEEEecccce-eeecCcHHHH
Confidence 9999999998665 4455444433
No 454
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=90.68 E-value=12 Score=33.44 Aligned_cols=209 Identities=12% Similarity=0.118 Sum_probs=0.0
Q ss_pred CCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecC--CCCe--EEEEecC----CCEEEEEeEecCCCce
Q 013578 215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISP--NGRF--LAAAAFT----ADVKVWEIVYSKDGLV 286 (440)
Q Consensus 215 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~--l~~~~~d----g~i~i~d~~~~~~~~~ 286 (440)
.|..+ +++....++-+.+||+. |+.++.+....-.--.+...- .|+. |++++.. ..|++|.+........
T Consensus 65 dp~kS-lIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 65 DPAKS-LIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp -GGG--EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred Ccccc-eEEEEeCCCCEEEEcCC-CcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Q ss_pred eeeeeeeeeeccccceEEEEEcCCCC----EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEE
Q 013578 287 KAVTSVMQLKGHKSAVTWLCFAPNSE----QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS 362 (440)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~~p~~~----~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 362 (440)
........+......+..+++..+.. +.+....+|.+.-|.+.....-.-.....+.+.... ++..|.
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--------Q~EGCV 214 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS--------QPEGCV 214 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---------EEEEE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC--------cceEEE
Q ss_pred eCCCCCEEEEec-CCEEEEEEcCCccchhhhh------ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 363 LSSDGKILAATH-GSTLQWLSVETGKVLDTAE------KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 363 ~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~------~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
......+|..+. +..|.-|+.+...-..... ......|..|+.-... ++++.+|+|.-.+++..||+..
T Consensus 215 VDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~----~g~gYLivSsQG~~sf~Vy~r~ 290 (381)
T PF02333_consen 215 VDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGS----DGKGYLIVSSQGDNSFAVYDRE 290 (381)
T ss_dssp EETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-C----CC-EEEEEEEGGGTEEEEEESS
T ss_pred EecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecC----CCCeEEEEEcCCCCeEEEEecC
Q ss_pred CC
Q 013578 436 SL 437 (440)
Q Consensus 436 ~~ 437 (440)
..
T Consensus 291 ~~ 292 (381)
T PF02333_consen 291 GP 292 (381)
T ss_dssp TT
T ss_pred CC
No 455
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=90.31 E-value=16 Score=34.29 Aligned_cols=154 Identities=17% Similarity=0.140 Sum_probs=68.1
Q ss_pred CCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccc-cceEEE
Q 013578 227 EGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK-SAVTWL 305 (440)
Q Consensus 227 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~-~~v~~~ 305 (440)
......++|.. |.....+.........+..-++|.+++... ..+..+|+.... . ....+.+.. ..=..+
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v----~---~~~~l~~~~~~~HHD~ 195 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKV----I---WEYDLPGGYYDFHHDI 195 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--E----E---EEEE--TTEE-B-S-E
T ss_pred CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCE----E---EeeecCCccccccccc
Confidence 44556677754 655555543332222266778888876655 667777652110 0 112222210 111346
Q ss_pred EEcCCCCEEEEEe--------------CCC---------cEEEEecCccccccCCCCc---c-ccccccccCCCCCeeee
Q 013578 306 CFAPNSEQIITAS--------------KDG---------TLRVWNINVRYHLDEDPKT---L-KVLPIPLLDSNGATLQY 358 (440)
Q Consensus 306 ~~~p~~~~l~s~~--------------~dg---------~i~iwd~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~v 358 (440)
...|+|++|+.+. .|. .|..||+..- +...... . ................+
T Consensus 196 ~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~--ld~~~~~~~~~~~~~~~~~~~~~~DW~H~ 273 (477)
T PF05935_consen 196 DELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDH--LDPYRDTVLKPYPYGDISGSGGGRDWLHI 273 (477)
T ss_dssp EE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGT--S-TT--TTGGT--SSSSS-SSTTSBS--E
T ss_pred EECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHh--CCcccccccccccccccccCCCCCCcccc
Confidence 6778888877666 221 1333444321 1000000 0 00011112233445678
Q ss_pred eeEEeCC-CCCEEEEec-CCEEEEEEcCCccchhhh
Q 013578 359 DRLSLSS-DGKILAATH-GSTLQWLSVETGKVLDTA 392 (440)
Q Consensus 359 ~~~~~s~-~g~~l~~~~-~~~i~i~d~~~~~~~~~~ 392 (440)
+++.+.+ ++.+++++. -..|...|..+++....+
T Consensus 274 Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 274 NSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp EEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred CccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence 8999988 666777766 458888898888877665
No 456
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.98 E-value=1.2 Score=24.41 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=20.7
Q ss_pred cccCcceeEEEEccCCCEEEEee-CC--CcEEEE
Q 013578 88 KGHGDSVTGLCFSSDGKCLATAC-AD--GVIRVH 118 (440)
Q Consensus 88 ~~H~~~V~~l~~s~dg~~l~t~s-~d--g~v~vW 118 (440)
....+.-....|||||++|+-++ .+ |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 33455678899999999888665 44 666665
No 457
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.70 E-value=9.4 Score=30.75 Aligned_cols=155 Identities=11% Similarity=0.129 Sum_probs=81.5
Q ss_pred EEEEeeCCceEEEEeCCC--CceeeeeeCCCCcccEEEecCCCCeEEEEecCC------CEEEEE-eEecC--CCcee--
Q 013578 221 IIASCSEGTDISIWHGKT--GKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTA------DVKVWE-IVYSK--DGLVK-- 287 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg------~i~i~d-~~~~~--~~~~~-- 287 (440)
.|+.+...+.|.+|++.+ .+.+..+..- +.|..+.++..|++|++--.+. .+|+|- .+... .....
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 444446677799999883 3455666553 6788999999999999874432 455542 21111 00000
Q ss_pred ---------------eeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccC-C
Q 013578 288 ---------------AVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLD-S 351 (440)
Q Consensus 288 ---------------~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~ 351 (440)
..-.+..+. -..++.+++..|-..-|+.|+. +.+.+|.+........ ..+.+.....- .
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElP-l~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~~~---~~~~lDFe~~l~~ 183 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELP-LSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQSE---KFSFLDFERSLID 183 (215)
T ss_pred EcccccccCCCCccccceEEEEec-CCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEecc---cccEEechhhhhh
Confidence 000111222 2456778888884444555654 5899998875432111 11111110000 0
Q ss_pred CCCeeeeeeEEeCCCCCEEEEecCCEEEEEEc
Q 013578 352 NGATLQYDRLSLSSDGKILAATHGSTLQWLSV 383 (440)
Q Consensus 352 ~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~ 383 (440)
.........+++ -+.|+|..++..++++.+
T Consensus 184 ~~~~~~p~~v~i--c~~yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 184 HIDNFKPTQVAI--CEGYIAVMSDLEVLVLKL 213 (215)
T ss_pred eecCceEEEEEE--EeeEEEEecCCEEEEEEE
Confidence 000111222333 356888888888887754
No 458
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.55 E-value=13 Score=33.53 Aligned_cols=85 Identities=13% Similarity=0.196 Sum_probs=47.5
Q ss_pred EEEeeCCceEEEEeCCCCce----eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec
Q 013578 222 IASCSEGTDISIWHGKTGKL----LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG 297 (440)
Q Consensus 222 l~s~~~d~~i~vwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 297 (440)
++.-..+++|.+++....+. ..+.+.....|..++|+.. .-+|.-...| +.+|-+...+ +.+...+.
T Consensus 81 lAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pek-------rslRlVks 151 (657)
T KOG2377|consen 81 LAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEK-------RSLRLVKS 151 (657)
T ss_pred EEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhh-------hhhhhhhh
Confidence 34444455566665532221 1222333445677788765 4455555444 6677665433 24555666
Q ss_pred cccceEEEEEcCCCCEEE
Q 013578 298 HKSAVTWLCFAPNSEQII 315 (440)
Q Consensus 298 h~~~v~~~~~~p~~~~l~ 315 (440)
|...|.-..|.++-+.+.
T Consensus 152 ~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 152 HNLNVNWYMYCPETAVIL 169 (657)
T ss_pred cccCccEEEEccccceEe
Confidence 788888888888776543
No 459
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.10 E-value=3.1 Score=32.59 Aligned_cols=29 Identities=14% Similarity=0.298 Sum_probs=24.6
Q ss_pred ceEEEEEcCCC------CEEEEEeCCCcEEEEecC
Q 013578 301 AVTWLCFAPNS------EQIITASKDGTLRVWNIN 329 (440)
Q Consensus 301 ~v~~~~~~p~~------~~l~s~~~dg~i~iwd~~ 329 (440)
.|.+++|||.| -+|++.+.++.|.||.-.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 78999999954 368889999999999865
No 460
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.84 E-value=11 Score=30.22 Aligned_cols=100 Identities=11% Similarity=0.008 Sum_probs=51.6
Q ss_pred EEEEeeCC--ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEE-EecCCCEEEEEeEecCCCceeeeeeeeeeec
Q 013578 221 IIASCSEG--TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAA-AAFTADVKVWEIVYSKDGLVKAVTSVMQLKG 297 (440)
Q Consensus 221 ~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 297 (440)
++.+.+.- ..|++||+.+++.+.........+..--...-|..+.. .=.+|.-..||.++-+ .+..+.
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~--------~lg~~~- 128 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLE--------ELGRFS- 128 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhh--------hhcccc-
Confidence 66665543 35999999999887665433111111111112333332 2356777777765433 222222
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q 013578 298 HKSAVTWLCFAPNSEQIITASKDGTLRVWNINVR 331 (440)
Q Consensus 298 h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~ 331 (440)
..+.=+.++. |+..|+.+....+++.-|.++-
T Consensus 129 y~GeGWgLt~--d~~~LimsdGsatL~frdP~tf 160 (262)
T COG3823 129 YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTF 160 (262)
T ss_pred cCCcceeeec--CCcceEeeCCceEEEecCHHHh
Confidence 2233345544 5656766665567776666543
No 461
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=88.71 E-value=28 Score=34.91 Aligned_cols=204 Identities=13% Similarity=0.152 Sum_probs=108.1
Q ss_pred CeEEEEeeCCceEEEEeCCCCceeeeee--------CCCCcccE--EEecCCCCeEEEEecC---CCEEEEEeEecCC--
Q 013578 219 STIIASCSEGTDISIWHGKTGKLLGNVD--------TNQLKNNM--AAISPNGRFLAAAAFT---ADVKVWEIVYSKD-- 283 (440)
Q Consensus 219 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~--------~~~~~v~~--~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~-- 283 (440)
+.-++.-...|.+++|=.+......... .....++. +++..+|+.+++++.+ +.|++|.+.-.-.
T Consensus 62 K~A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~ 141 (753)
T PF11635_consen 62 KSACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAK 141 (753)
T ss_pred ceEEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCc
Confidence 3456777888999998763322222211 12333444 4545677777666665 8899998754322
Q ss_pred Cc-e-----e--eeeeeeee--ec-------------cccceEEEEEcC----C---CCEEEEEeC----CCcEEEEecC
Q 013578 284 GL-V-----K--AVTSVMQL--KG-------------HKSAVTWLCFAP----N---SEQIITASK----DGTLRVWNIN 329 (440)
Q Consensus 284 ~~-~-----~--~~~~~~~~--~~-------------h~~~v~~~~~~p----~---~~~l~s~~~----dg~i~iwd~~ 329 (440)
.. . . ....+... .. .-..++.+.|-+ . -..|++.+. ...|.-|.++
T Consensus 142 ~~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~ 221 (753)
T PF11635_consen 142 PQQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELR 221 (753)
T ss_pred CccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEE
Confidence 00 0 0 01111111 00 113566777755 1 123444432 3368999987
Q ss_pred ccccccC-----CC-------CccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcCCccchhhh----
Q 013578 330 VRYHLDE-----DP-------KTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVETGKVLDTA---- 392 (440)
Q Consensus 330 ~~~~~~~-----~~-------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~~~~~~~~~---- 392 (440)
.....-. .. .............-.....|.++....-+.+++.. .||.|.++|..+.+.+...
T Consensus 222 ~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~ 301 (753)
T PF11635_consen 222 EEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNG 301 (753)
T ss_pred ccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhccccccc
Confidence 5432100 00 00000111111111222346667776777777765 5999999999888665443
Q ss_pred hc--------------cccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEE
Q 013578 393 EK--------------AHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVK 430 (440)
Q Consensus 393 ~~--------------~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~ 430 (440)
.. .+...+..++|+|.+ ..++.-..||.+.
T Consensus 302 ~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~--------c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 302 EPPNTVTSLFQAGFHFPCIQPPLHVAFSPTM--------CSLVQIDEDGKTK 345 (753)
T ss_pred CCccccccccccccccccCCCCceEEECccc--------ceEEEEecCCCce
Confidence 10 111244568899998 7888888888855
No 462
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=88.54 E-value=6.1 Score=33.06 Aligned_cols=114 Identities=17% Similarity=0.078 Sum_probs=67.0
Q ss_pred cceEEEEEcCCCCEEEEEeCCC--cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCE
Q 013578 300 SAVTWLCFAPNSEQIITASKDG--TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGST 377 (440)
Q Consensus 300 ~~v~~~~~~p~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 377 (440)
....++.|..+|.++-+.+.-| .|+.+|+.+++...... ++...+ --.++...|.-+..+=.++.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~-----l~~~~F--------gEGit~~~d~l~qLTWk~~~ 111 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVP-----LPPRYF--------GEGITILGDKLYQLTWKEGT 111 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE------TTT----------EEEEEEETTEEEEEESSSSE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEE-----CCcccc--------ceeEEEECCEEEEEEecCCe
Confidence 3456788877888888888766 69999999875432110 000000 01233334433444555899
Q ss_pred EEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 378 LQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 378 i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
..+||..+.+.+.++. ..+.=+.++...+ .|+.......++++|..+.+
T Consensus 112 ~f~yd~~tl~~~~~~~--y~~EGWGLt~dg~----------~Li~SDGS~~L~~~dP~~f~ 160 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFP--YPGEGWGLTSDGK----------RLIMSDGSSRLYFLDPETFK 160 (264)
T ss_dssp EEEEETTTTEEEEEEE---SSS--EEEECSS----------CEEEE-SSSEEEEE-TTT-S
T ss_pred EEEEccccceEEEEEe--cCCcceEEEcCCC----------EEEEECCccceEEECCcccc
Confidence 9999999998888774 4566677774433 44444446678888876643
No 463
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=88.54 E-value=2.9 Score=37.39 Aligned_cols=171 Identities=16% Similarity=0.120 Sum_probs=87.3
Q ss_pred ccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCC-CCCCCc-eEEEccCCCeEEEEeecCCcce
Q 013578 87 LKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLP-PGGPPT-AVAFADNATSIVVATHNLSGCS 164 (440)
Q Consensus 87 l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~-~~~~v~-~v~~~~~~~~l~~~~~~~~~~~ 164 (440)
+..--..|..+-..|||+.|..-+. ..+.|+++........+......+ ....|+ .+.....|..++++..|+....
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ 294 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ 294 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence 3344566778889999998776554 578999987655432222211111 001122 2223345556666666643333
Q ss_pred EEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCC-CCeEEEEeeCCceEEEEeCCCCceee
Q 013578 165 LYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTAD-GSTIIASCSEGTDISIWHGKTGKLLG 243 (440)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~ 243 (440)
+........... +..+.. ........+..|+ .+.-+++-...|++.++.....+.+.
T Consensus 295 WFdvr~~~~p~l---------------------~h~R~f-~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL 352 (733)
T COG4590 295 WFDVRRDGQPHL---------------------NHIRNF-KLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL 352 (733)
T ss_pred eeeeecCCCCcc---------------------eeeecc-ccCcccceeeccccccceEEEEcCCCceeeeecccCccee
Confidence 322221111000 000000 0000111111222 23356777778888887655444332
Q ss_pred eeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecC
Q 013578 244 NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSK 282 (440)
Q Consensus 244 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 282 (440)
.-.. -....-+++||.+.++++- +.|+|+++.+.+..
T Consensus 353 ~~~~-~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~ 389 (733)
T COG4590 353 FERA-YQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRN 389 (733)
T ss_pred hhhh-hcCcceeeeCcccchheee-cCCceEEEEecCCC
Confidence 2222 2256678999999998875 46789999886554
No 464
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=88.28 E-value=20 Score=32.61 Aligned_cols=117 Identities=9% Similarity=-0.025 Sum_probs=63.6
Q ss_pred CCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEec
Q 013578 249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNI 328 (440)
Q Consensus 249 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~ 328 (440)
...+..+.+.+++.+++++ ..|.+.. ....+.......+... ........+.++.|.+++..++ ++.+|.+....-
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~-~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s~D 355 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEEA-DIKSRGFGILDVGYRSKKEAWA-AGGSGILLRSTD 355 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccceeec-ccCCCCcceEEEEEcCCCcEEE-EECCCcEEEeCC
Confidence 4457788899998887766 5665543 2222210000011111 1111223588999998777554 456777666532
Q ss_pred CccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEE
Q 013578 329 NVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWL 381 (440)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~ 381 (440)
. ++. ..... ....-...++.+.|.++++.+++|.+|.|.-|
T Consensus 356 ~-G~t-------W~~~~----~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 356 G-GKS-------WKRDK----GADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred C-Ccc-------eeEcc----ccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 2 211 00000 00111234668999999999999999987655
No 465
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.25 E-value=21 Score=32.95 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=24.8
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q 013578 299 KSAVTWLCFAPNSEQIITASKDGTLRVWNINV 330 (440)
Q Consensus 299 ~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~ 330 (440)
-...+.|+|.|+|++|++--..|.|++++-.+
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~ 60 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPET 60 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCC
Confidence 34568999999998777665569999997654
No 466
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=87.91 E-value=2.4 Score=40.63 Aligned_cols=76 Identities=20% Similarity=0.240 Sum_probs=43.1
Q ss_pred CCCCeEEEEecCCCEEEEEeEecC-CCceeeeee---------eeee--------eccccceEEEEEcC----CCCEEEE
Q 013578 259 PNGRFLAAAAFTADVKVWEIVYSK-DGLVKAVTS---------VMQL--------KGHKSAVTWLCFAP----NSEQIIT 316 (440)
Q Consensus 259 ~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~---------~~~~--------~~h~~~v~~~~~~p----~~~~l~s 316 (440)
++...++++..||.+......... .+....... +..+ ....+.+..+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 467788888899998888765411 111000000 0000 01123455666666 6789999
Q ss_pred EeCCCcEEEEecCccccc
Q 013578 317 ASKDGTLRVWNINVRYHL 334 (440)
Q Consensus 317 ~~~dg~i~iwd~~~~~~~ 334 (440)
.+.|+++|+||+.++.++
T Consensus 236 l~~D~~LRiW~l~t~~~~ 253 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCL 253 (547)
T ss_dssp EETTSEEEEEETTTTCEE
T ss_pred EeCCCeEEEEECCCCeEE
Confidence 999999999999998873
No 467
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=87.84 E-value=1.6 Score=24.31 Aligned_cols=29 Identities=31% Similarity=0.404 Sum_probs=22.1
Q ss_pred CCCCEEEEec--CCEEEEEEcCCccchhhhh
Q 013578 365 SDGKILAATH--GSTLQWLSVETGKVLDTAE 393 (440)
Q Consensus 365 ~~g~~l~~~~--~~~i~i~d~~~~~~~~~~~ 393 (440)
|+++.|.++. ++.|.++|..+++.+..+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 5677666644 7899999999888877764
No 468
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=87.23 E-value=20 Score=31.65 Aligned_cols=61 Identities=13% Similarity=0.122 Sum_probs=35.3
Q ss_pred CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEE
Q 013578 260 NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLR 324 (440)
Q Consensus 260 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~ 324 (440)
+|.+|+..-..+.|....+.... .. ......+......+..+++.|||.++++...+|.|.
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~--~~--~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDG--SV--TEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTE--EE--EEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCC--Cc--cceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 34455555445566666654221 11 111222334455899999999999888888888874
No 469
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=86.99 E-value=3.1 Score=22.72 Aligned_cols=28 Identities=14% Similarity=0.366 Sum_probs=18.8
Q ss_pred CCcccEEEecCCCCeEEEEec-C--CCEEEE
Q 013578 249 QLKNNMAAISPNGRFLAAAAF-T--ADVKVW 276 (440)
Q Consensus 249 ~~~v~~~~~s~~~~~l~~~~~-d--g~i~i~ 276 (440)
........|+|||+.|+..+. + |.-.||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 445667899999998887764 3 555555
No 470
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.79 E-value=43 Score=34.93 Aligned_cols=155 Identities=10% Similarity=0.183 Sum_probs=87.7
Q ss_pred CCceEEEEeCCCCceeeeeeCCCCcccEEEe--------cCCCCeEEEEecCCCEEEEEeEecCCCcee-eeeeeeeeec
Q 013578 227 EGTDISIWHGKTGKLLGNVDTNQLKNNMAAI--------SPNGRFLAAAAFTADVKVWEIVYSKDGLVK-AVTSVMQLKG 297 (440)
Q Consensus 227 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~--------s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~ 297 (440)
.|+.+.+|+.+++.....+.+....|..+.. -|.=+++++-..--.|.++-+......... .......+..
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~ 176 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV 176 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence 4677999999997777777666555555432 223345555555667888776544321111 1111122333
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCcEEEEecC----ccc----cccCCC--Cc-cccccccccCC-CCCeeeeeeEEeCC
Q 013578 298 HKSAVTWLCFAPNSEQIITASKDGTLRVWNIN----VRY----HLDEDP--KT-LKVLPIPLLDS-NGATLQYDRLSLSS 365 (440)
Q Consensus 298 h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~----~~~----~~~~~~--~~-~~~~~~~~~~~-~~~~~~v~~~~~s~ 365 (440)
....|+|+....+|+.|++| .|| .+|.+. .+. +..... .. ....+. +... ..+..+|..++...
T Consensus 177 dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs-~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS-LLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred CCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhh-hhcCCCCCCCcceeeEecc
Confidence 35568899988888866655 566 445432 111 000000 00 001111 2222 25566789999998
Q ss_pred CCCEEEE-ecCCEEEEEEcCC
Q 013578 366 DGKILAA-THGSTLQWLSVET 385 (440)
Q Consensus 366 ~g~~l~~-~~~~~i~i~d~~~ 385 (440)
...++.+ +..+.|.+||+..
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCceEEEEEccC
Confidence 8888777 4579999999976
No 471
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=86.75 E-value=10 Score=37.09 Aligned_cols=39 Identities=26% Similarity=0.299 Sum_probs=29.3
Q ss_pred ccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCC
Q 013578 81 PLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDA 123 (440)
Q Consensus 81 ~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~ 123 (440)
|..+..|.|| .|.+++.+.+..+++| .+|.|.-|-++..
T Consensus 220 PkrV~gL~gh--~~~qisvs~~HslvLT--~~g~Vys~GlN~~ 258 (1267)
T KOG0783|consen 220 PKRVPGLIGH--KVIQISVSHTHSLVLT--KFGSVYSWGLNGS 258 (1267)
T ss_pred cccccccccc--ceEEEEeecceeEEEe--ecceEEEeecCcc
Confidence 4446667777 5889999888777766 6888999987654
No 472
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=86.44 E-value=5.6 Score=36.34 Aligned_cols=61 Identities=18% Similarity=0.356 Sum_probs=46.1
Q ss_pred CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 013578 260 NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNIN 329 (440)
Q Consensus 260 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~ 329 (440)
...++|+|+..|.|++||--... ....+.+....|..+..+.+|.++++.|. ..+.+-|++
T Consensus 572 esGyIa~as~kGDirLyDRig~r--------AKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKR--------AKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhcch--------hhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 45689999999999999942211 23345667788999999999998877775 477777775
No 473
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=86.40 E-value=23 Score=31.31 Aligned_cols=66 Identities=17% Similarity=0.193 Sum_probs=38.0
Q ss_pred CCcccEEEecCCCCeEEEEecC-----C---------CEEEEEeEecCCCceeeeeeeeeeec-----cccceEEEEEcC
Q 013578 249 QLKNNMAAISPNGRFLAAAAFT-----A---------DVKVWEIVYSKDGLVKAVTSVMQLKG-----HKSAVTWLCFAP 309 (440)
Q Consensus 249 ~~~v~~~~~s~~~~~l~~~~~d-----g---------~i~i~d~~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~p 309 (440)
+...-.++++|+|+.|+++.+. + .++++.......+.. .......+.. ....|..+.+-+
T Consensus 146 N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~-~~~~~y~ld~~~~~~~~~~isd~~al~ 224 (326)
T PF13449_consen 146 NRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEP-VAEYAYPLDPPPTAPGDNGISDIAALP 224 (326)
T ss_pred CCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCcc-ceEEEEeCCccccccCCCCceeEEEEC
Confidence 3446689999999977776532 2 156665543321111 1112223322 356788899999
Q ss_pred CCCEEE
Q 013578 310 NSEQII 315 (440)
Q Consensus 310 ~~~~l~ 315 (440)
++++|+
T Consensus 225 d~~lLv 230 (326)
T PF13449_consen 225 DGRLLV 230 (326)
T ss_pred CCcEEE
Confidence 888665
No 474
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=86.21 E-value=8.1 Score=36.53 Aligned_cols=79 Identities=16% Similarity=0.275 Sum_probs=48.7
Q ss_pred ccccccccCcceeEEEEccCCCEEEEeeCCC-cEEEEecCCCCCcceeeEEecCCC-----CCCCceEEEccCCCeEEEE
Q 013578 83 DVNTLKGHGDSVTGLCFSSDGKCLATACADG-VIRVHKLDDASSKSFKFLRINLPP-----GGPPTAVAFADNATSIVVA 156 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg-~v~vW~~~~~~~~~~~~~~~~~~~-----~~~v~~v~~~~~~~~l~~~ 156 (440)
.+..|+.|..+|..++|.+.|..+++++-.| .|.++.+...-............+ ...+..++|+...+.+..+
T Consensus 307 ~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdicfs~~s~~r~~g 386 (788)
T KOG2109|consen 307 DIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDICFSEVSTIRTAG 386 (788)
T ss_pred hhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccccccccchhcchHHHHHHHhhhhhcceEeec
Confidence 3567899999999999999999999998665 355555432211111111111111 1234567788777777777
Q ss_pred eecCC
Q 013578 157 THNLS 161 (440)
Q Consensus 157 ~~~~~ 161 (440)
+.++.
T Consensus 387 sc~Ge 391 (788)
T KOG2109|consen 387 SCEGE 391 (788)
T ss_pred ccCCC
Confidence 65543
No 475
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=85.70 E-value=22 Score=32.75 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=24.7
Q ss_pred cCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 397 EGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 397 ~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
+..|.++...+.. +.|++...+|.|.+|++..
T Consensus 189 ~~~I~~v~~d~~r--------~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 189 RPKIVQVAVDPSR--------RLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp ---EEEEEEETTT--------TEEEEEESSE-EEEEEE-S
T ss_pred hhceeeEEecCCc--------CEEEEEeCCCcEEEEEEeC
Confidence 3459999998886 7999999999999999974
No 476
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.30 E-value=30 Score=32.11 Aligned_cols=79 Identities=11% Similarity=0.214 Sum_probs=43.7
Q ss_pred ccEEEecCCCCeEEEEecCCCEEEEEe-EecCCCceeee----ee-----eeee--eccccceEEEEEcCCC---CEEEE
Q 013578 252 NNMAAISPNGRFLAAAAFTADVKVWEI-VYSKDGLVKAV----TS-----VMQL--KGHKSAVTWLCFAPNS---EQIIT 316 (440)
Q Consensus 252 v~~~~~s~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~----~~-----~~~~--~~h~~~v~~~~~~p~~---~~l~s 316 (440)
|..+..++.|..++..+.+|.+.++=. +.+.++..... .+ -..+ ....-.+...+|+|+. ..|..
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~i 185 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVL 185 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEE
Confidence 455777899999999988886655431 12221111100 00 0001 1111235567788865 45666
Q ss_pred EeCCCcEEEEecCc
Q 013578 317 ASKDGTLRVWNINV 330 (440)
Q Consensus 317 ~~~dg~i~iwd~~~ 330 (440)
-+.|..||+||+..
T Consensus 186 L~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 186 LTSDNVIRIYSLSE 199 (741)
T ss_pred EecCcEEEEEecCC
Confidence 66777888888763
No 477
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=85.19 E-value=37 Score=32.65 Aligned_cols=61 Identities=15% Similarity=0.135 Sum_probs=43.4
Q ss_pred ceeEEEEccCCCEEEEe-----eCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecC
Q 013578 93 SVTGLCFSSDGKCLATA-----CADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL 160 (440)
Q Consensus 93 ~V~~l~~s~dg~~l~t~-----s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~ 160 (440)
.+-.++.|||++++|-+ +..-++++-|+.++.... ..-.+....++|.+|++.+.....+.
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~-------d~i~~~~~~~~Wa~d~~~lfYt~~d~ 195 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELP-------DEITNTSGSFAWAADGKTLFYTRLDE 195 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccc-------hhhcccccceEEecCCCeEEEEEEcC
Confidence 56678899999998854 444578999998875321 11123467889999999888877663
No 478
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=84.51 E-value=25 Score=30.17 Aligned_cols=220 Identities=12% Similarity=0.139 Sum_probs=110.4
Q ss_pred cccccCCCCCeEEEEeeCCceEEEEeCC------CC-ceeeeeeC-----CCCcccEEEecCCCC------------eEE
Q 013578 210 SATYGTADGSTIIASCSEGTDISIWHGK------TG-KLLGNVDT-----NQLKNNMAAISPNGR------------FLA 265 (440)
Q Consensus 210 ~~~~~~~~~~~~l~s~~~d~~i~vwd~~------~~-~~~~~~~~-----~~~~v~~~~~s~~~~------------~l~ 265 (440)
..+.++|.+. +.++....+...+||.. .. ..+-.+.. .....+.+.|+.... .++
T Consensus 26 WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 26 WGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred ceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 3445567665 66777777889999986 12 22333331 123456677764322 367
Q ss_pred EEecCCCEEEEEeEecCCCceeeeeeeeeee-ccccce-EEEEEcC--CCCEEEEEe-CCCcEEEEecCccccccCCCCc
Q 013578 266 AAAFTADVKVWEIVYSKDGLVKAVTSVMQLK-GHKSAV-TWLCFAP--NSEQIITAS-KDGTLRVWNINVRYHLDEDPKT 340 (440)
Q Consensus 266 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~h~~~v-~~~~~~p--~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~ 340 (440)
.+++||+|.-|........... ....+. ...+.| ..+++.. .+.+|+.+. ..++|.++|-.-..... +..
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~---~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~--~g~ 179 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTR---AEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL--PGS 179 (336)
T ss_pred EEeCCceEEeecCcCCcccccc---cEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC--CCC
Confidence 7889999999985433210000 111121 112333 3566554 355665544 68899999865332110 000
Q ss_pred ccccccccc------CCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcCCccchhhhh-ccccCCeEEEEecCCCCCC
Q 013578 341 LKVLPIPLL------DSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVETGKVLDTAE-KAHEGEITCMAWAPKTIPM 412 (440)
Q Consensus 341 ~~~~~~~~~------~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~ 412 (440)
...-.++.. ..-+...-|+-..-.++++.=+.| .-|.|.+||.. |+.++++. .+.-...+.|+..|.. .
T Consensus 180 F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~--F 256 (336)
T TIGR03118 180 FIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPES--F 256 (336)
T ss_pred ccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhh--h
Confidence 000000000 000111111111222222211112 23688888874 55555542 2334466778876643 1
Q ss_pred CCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 413 GNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 413 ~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
+.-.+.+|+----||+|..||..+++
T Consensus 257 G~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 257 GSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred CCCCCCeEEeecCCceeEEecCCCCc
Confidence 11122577766669999999988765
No 479
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=84.27 E-value=26 Score=30.20 Aligned_cols=187 Identities=10% Similarity=0.063 Sum_probs=0.0
Q ss_pred eEEEEeCCCCceeeeee------CCCCcccEEEecCCCC----eEEEEecCC--CEEEEEeEecC-----------CCce
Q 013578 230 DISIWHGKTGKLLGNVD------TNQLKNNMAAISPNGR----FLAAAAFTA--DVKVWEIVYSK-----------DGLV 286 (440)
Q Consensus 230 ~i~vwd~~~~~~~~~~~------~~~~~v~~~~~s~~~~----~l~~~~~dg--~i~i~d~~~~~-----------~~~~ 286 (440)
.|.+||+.+++.++.+. ...+....+.+..... .+|.-+..+ -|.+||+..++ +...
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Q ss_pred eeeeeeeeeeccccceEEEEEcC---CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe
Q 013578 287 KAVTSVMQLKGHKSAVTWLCFAP---NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL 363 (440)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~~p---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 363 (440)
.....-...-.....+.+++.+| ++++|+-.... .-++|.+.+..............................+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ls-s~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLS-SRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCC-CCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Q ss_pred CCCCCEEEEec-CCEEEEEEcCC----ccchhhhhccc-cCCeEEEEecC--CCCCCCCCcceEEEEeeC
Q 013578 364 SSDGKILAATH-GSTLQWLSVET----GKVLDTAEKAH-EGEITCMAWAP--KTIPMGNQQVSVLATSSV 425 (440)
Q Consensus 364 s~~g~~l~~~~-~~~i~i~d~~~----~~~~~~~~~~h-~~~v~~v~~~~--~~~~~~~~~~~~l~t~~~ 425 (440)
+++|.++.+-- .+.|..|+..+ ........... -.-+.++.+.+ ++ .+.+.+..
T Consensus 194 D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g--------~L~v~snr 255 (287)
T PF03022_consen 194 DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDG--------YLWVLSNR 255 (287)
T ss_dssp ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS---------EEEEE-S
T ss_pred CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCc--------eEEEEECc
No 480
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=83.55 E-value=26 Score=29.55 Aligned_cols=142 Identities=13% Similarity=0.108 Sum_probs=85.7
Q ss_pred cCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeee
Q 013578 214 GTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM 293 (440)
Q Consensus 214 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 293 (440)
-.+||. .-+++...+.|--.|..+|+....--+.......+...|||..-++=+.. -|.-.|-++.. +..+...
T Consensus 69 papdG~-VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~e---vt~f~lp- 142 (353)
T COG4257 69 PAPDGA-VWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLE---VTRFPLP- 142 (353)
T ss_pred cCCCCc-eEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccc---eEEeecc-
Confidence 356776 67777777888888888888765544445566778888988765553332 33333332211 1222111
Q ss_pred eeeccccceEEEEEcCCCCEEEEEeC---------CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeC
Q 013578 294 QLKGHKSAVTWLCFAPNSEQIITASK---------DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLS 364 (440)
Q Consensus 294 ~~~~h~~~v~~~~~~p~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 364 (440)
.+.-........|.+.|.+-+++.. .+.|++|+...+ ..-+.++..
T Consensus 143 -~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG------------------------~gpyGi~at 197 (353)
T COG4257 143 -LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQG------------------------GGPYGICAT 197 (353)
T ss_pred -cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCC------------------------CCCcceEEC
Confidence 2223456778889999998777752 234555554321 112358889
Q ss_pred CCCCEEEEe-cCCEEEEEEcCCc
Q 013578 365 SDGKILAAT-HGSTLQWLSVETG 386 (440)
Q Consensus 365 ~~g~~l~~~-~~~~i~i~d~~~~ 386 (440)
|||..-.+. .++.|-..|..++
T Consensus 198 pdGsvwyaslagnaiaridp~~~ 220 (353)
T COG4257 198 PDGSVWYASLAGNAIARIDPFAG 220 (353)
T ss_pred CCCcEEEEeccccceEEcccccC
Confidence 999966654 3667777777666
No 481
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=83.18 E-value=26 Score=29.25 Aligned_cols=142 Identities=9% Similarity=0.096 Sum_probs=68.2
Q ss_pred EEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeeccc
Q 013578 116 RVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHH 195 (440)
Q Consensus 116 ~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (440)
.+||+.+.+... .....+--+.+-.+.+||+.+.+++.......++++...... ....|...
T Consensus 49 ~~yD~~tn~~rp-----l~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~-------------~~~~w~e~ 110 (243)
T PF07250_consen 49 VEYDPNTNTFRP-----LTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSD-------------GTCDWTES 110 (243)
T ss_pred EEEecCCCcEEe-----ccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCC-------------CCCCceEC
Confidence 467777654321 122222334445678999999988876555556555533200 00111110
Q ss_pred ccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC-c-eee--eee-----CCCCcccEEEecCCCCeEEE
Q 013578 196 KVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG-K-LLG--NVD-----TNQLKNNMAAISPNGRFLAA 266 (440)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~-~~~--~~~-----~~~~~v~~~~~s~~~~~l~~ 266 (440)
... +...........-+||+.+++.|....+..+|..... . ... .+. ....--..+...|+|++|+.
T Consensus 111 ~~~----m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~ 186 (243)
T PF07250_consen 111 PND----MQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIF 186 (243)
T ss_pred ccc----ccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEE
Confidence 000 1111112222336789844444444444555654221 1 111 111 01111235677899999998
Q ss_pred EecCCCEEEEEeEec
Q 013578 267 AAFTADVKVWEIVYS 281 (440)
Q Consensus 267 ~~~dg~i~i~d~~~~ 281 (440)
+..+. .|||....
T Consensus 187 an~~s--~i~d~~~n 199 (243)
T PF07250_consen 187 ANRGS--IIYDYKTN 199 (243)
T ss_pred EcCCc--EEEeCCCC
Confidence 87654 45676443
No 482
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=83.14 E-value=47 Score=32.25 Aligned_cols=33 Identities=33% Similarity=0.591 Sum_probs=29.4
Q ss_pred CcceeEEEEccCCCEEEEeeCCCcEEEEecCCC
Q 013578 91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDA 123 (440)
Q Consensus 91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~ 123 (440)
.+.|-.+.|.++++.++..-.+|.|.+||.+.+
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~ 161 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSEN 161 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEecccc
Confidence 578999999999999999999999999999433
No 483
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=82.10 E-value=23 Score=32.10 Aligned_cols=158 Identities=13% Similarity=0.123 Sum_probs=86.2
Q ss_pred ccccCCCCCeEEEEeeCCceEEEEeCCCCcee-eee-eCCCC----ccc-EEEecCCCCeEEEEecCCCEEEE-EeEecC
Q 013578 211 ATYGTADGSTIIASCSEGTDISIWHGKTGKLL-GNV-DTNQL----KNN-MAAISPNGRFLAAAAFTADVKVW-EIVYSK 282 (440)
Q Consensus 211 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~-~~~-~~~~~----~v~-~~~~s~~~~~l~~~~~dg~i~i~-d~~~~~ 282 (440)
.....|||+.+.+-.+ .++.++++.+.... +++ ....+ .|+ .+..-..|..+.+++.||-|.-| |++...
T Consensus 225 qllL~Pdg~~LYv~~g--~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~ 302 (733)
T COG4590 225 QLLLTPDGKTLYVRTG--SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDG 302 (733)
T ss_pred hhEECCCCCEEEEecC--CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCC
Confidence 3445788884433333 55888877654321 121 11111 122 12223456778889999998776 554333
Q ss_pred CCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEE
Q 013578 283 DGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS 362 (440)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 362 (440)
. .....+..++-...++.-+.-..+.+-+++-+..|++.++.......+-. .+.. ....-++
T Consensus 303 ~---p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~---------~~~~------~~~~~~~ 364 (733)
T COG4590 303 Q---PHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF---------ERAY------QAPQLVA 364 (733)
T ss_pred C---CcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh---------hhhh------cCcceee
Confidence 2 11222223332223444333333445577888888888776543221100 0011 1234589
Q ss_pred eCCCCCEEEEecCCEEEEEEcCCccc
Q 013578 363 LSSDGKILAATHGSTLQWLSVETGKV 388 (440)
Q Consensus 363 ~s~~g~~l~~~~~~~i~i~d~~~~~~ 388 (440)
+||++.++++-+.|.++++.+++..+
T Consensus 365 ~Sp~~~~Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 365 MSPNQAYLLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred eCcccchheeecCCceEEEEecCCCC
Confidence 99999999999999999998876543
No 484
>PRK13613 lipoprotein LpqB; Provisional
Probab=82.01 E-value=52 Score=31.92 Aligned_cols=79 Identities=14% Similarity=0.169 Sum_probs=50.8
Q ss_pred CcccEEEecCCCCeEEEEec---CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe-CCCcEEE
Q 013578 250 LKNNMAAISPNGRFLAAAAF---TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS-KDGTLRV 325 (440)
Q Consensus 250 ~~v~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~-~dg~i~i 325 (440)
..|..+.+|+||-.++.-.. .++|++--+....++. ........+......+.+++|..++.+++.+. .++...+
T Consensus 455 ~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~-~~l~~~~~l~~~l~~v~~~~W~~~~sL~Vlg~~~~~~~~v 533 (599)
T PRK13613 455 HRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAV-VSVEEFRSLAPELEDVTDMSWAGDSQLVVLGREEGGVQQA 533 (599)
T ss_pred CEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCc-EEeeccEEeccCCCccceeEEcCCCEEEEEeccCCCCcce
Confidence 36999999999988877654 3677777776655554 33333333333334599999999888766553 3334445
Q ss_pred EecC
Q 013578 326 WNIN 329 (440)
Q Consensus 326 wd~~ 329 (440)
|-+.
T Consensus 534 ~~v~ 537 (599)
T PRK13613 534 RYVQ 537 (599)
T ss_pred EEEe
Confidence 5443
No 485
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=81.60 E-value=24 Score=34.70 Aligned_cols=88 Identities=18% Similarity=0.188 Sum_probs=54.1
Q ss_pred EeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCE
Q 013578 234 WHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQ 313 (440)
Q Consensus 234 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 313 (440)
||.+ +...+.....++...++..| ++.|+.+|.|.++...+.. ..+ .......|...|+++.+..++-+
T Consensus 614 wd~e---p~~~~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~----~~~-~leahqee~~~Vthm~~~~~gVw 682 (925)
T KOG3522|consen 614 WDGE---PNISIPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFI----RSW-DLEAHQEEAHSVTHMLYLDNGVW 682 (925)
T ss_pred CCCC---CccccccCCccccchhhhhc---eeeeecCCceEEEechhcc----ccc-hhHHHHhhcceEEEEEeeCCceE
Confidence 6654 22333344566777777655 5677889999999875443 111 11222335567999999877777
Q ss_pred EEEEeCCCcEEEEecCcccc
Q 013578 314 IITASKDGTLRVWNINVRYH 333 (440)
Q Consensus 314 l~s~~~dg~i~iwd~~~~~~ 333 (440)
++..+.| .+++++.++-..
T Consensus 683 vafasG~-~~rlfhtetl~h 701 (925)
T KOG3522|consen 683 VAFASGD-EERLFHTETLWH 701 (925)
T ss_pred EEEcCCC-EEEEecccccCC
Confidence 7666655 566666665443
No 486
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=81.44 E-value=5.8 Score=38.03 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.4
Q ss_pred eEEEEeeCCCeEEEEeCCCCCC
Q 013578 418 SVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 418 ~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
.+|++.+.|+++|+|++.++++
T Consensus 231 ~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 231 TFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp TEEEEEETTSEEEEEETTTTCE
T ss_pred CEEEEEeCCCeEEEEECCCCeE
Confidence 6999999999999999999875
No 487
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=80.04 E-value=21 Score=26.29 Aligned_cols=54 Identities=6% Similarity=0.051 Sum_probs=31.5
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecC----CCCeEEEEecCCCEEEEE
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISP----NGRFLAAAAFTADVKVWE 277 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~----~~~~l~~~~~dg~i~i~d 277 (440)
.|+.|+... +..||......+.....+ ..+.++.+-. ...++++|+ +..|.-||
T Consensus 66 ~LliGt~t~-llaYDV~~N~d~Fyke~~-DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd 123 (136)
T PF14781_consen 66 CLLIGTQTS-LLAYDVENNSDLFYKEVP-DGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFD 123 (136)
T ss_pred EEEEeccce-EEEEEcccCchhhhhhCc-cceeEEEEEecCCCCCcEEEECc-eEEEEEeC
Confidence 677777665 999999877665443333 4567766532 233444443 44454444
No 488
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=79.41 E-value=48 Score=29.91 Aligned_cols=61 Identities=7% Similarity=0.065 Sum_probs=38.3
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCC--CcccEEEecCCCCeEEEEecCCCEEEEEeEecC
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQ--LKNNMAAISPNGRFLAAAAFTADVKVWEIVYSK 282 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 282 (440)
.++.+..+|.|.-.|..++..+....... ..+..-.+..+|+ +++++.+|.++.+|.+.+.
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~ 132 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGT 132 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCc
Confidence 46666788889989998888664333221 2222222333665 7788889977777775444
No 489
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=79.36 E-value=48 Score=29.91 Aligned_cols=40 Identities=18% Similarity=0.256 Sum_probs=30.4
Q ss_pred hhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 390 DTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 390 ~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
..+.....+.+..+++.-+ +++++=+.+..+.+|.....+
T Consensus 423 ~Kl~~s~~~~i~~ls~gGd---------Rlfv~rs~~~~v~vw~~~~~~ 462 (465)
T KOG2714|consen 423 QKLVPSAGGLIVRLSSGGD---------RLFVVRSVESPVTVWEVLECE 462 (465)
T ss_pred hhhccccCCcEEEEecCCe---------eEEEEEeccCceeEEEecCCC
Confidence 3343445667888888777 789999999999999987653
No 490
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=79.02 E-value=60 Score=30.84 Aligned_cols=110 Identities=16% Similarity=0.225 Sum_probs=57.0
Q ss_pred cCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC--CEEEEec--CCEEEEEEc
Q 013578 308 APNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG--KILAATH--GSTLQWLSV 383 (440)
Q Consensus 308 ~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~~--~~~i~i~d~ 383 (440)
..++..++.+..+|.+....+..... .... ...... .....++.+-.+| .+++++. |+.+.-+..
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~------~i~i---~~~g~~--~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~ 287 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGG------SISI---TYLGTL--CSIASSLTYLKNGGDYLFVGSEFGDSQLLQISL 287 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEE------EEEE---EEEEE----S-ESEEEEESTT--EEEEEESSS-EEEEEEES
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCC------eEEE---EEcCCc--CChhheEEEEcCCCEEEEEEEecCCcEEEEEeC
Confidence 44677888999999998887764321 0000 000000 1123456676777 5555544 566777775
Q ss_pred CCccchhhhhccccCCeEEEEecCCCCCCCCCcc-----eEEEEee---CCCeEEEEe
Q 013578 384 ETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQV-----SVLATSS---VDKKVKLWL 433 (440)
Q Consensus 384 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~-----~~l~t~~---~Dg~i~vw~ 433 (440)
..-+.+..+. .-++|.+++..+.... +.. ..|++++ .+|.+++.+
T Consensus 288 ~~l~~~~~~~--N~~Pi~D~~v~~~~~~---~~~~~~~~~~lv~~sG~g~~gsL~~lr 340 (504)
T PF10433_consen 288 SNLEVLDSLP--NWGPIVDFCVVDSSNS---GQPSNPSSDQLVACSGAGKRGSLRILR 340 (504)
T ss_dssp ESEEEEEEE------SEEEEEEE-TSSS---SS-------EEEEEESSGGG-EEEEEE
T ss_pred CCcEEEEecc--CcCCccceEEeccccC---CCCcccccceEEEEECcCCCCcEEEEe
Confidence 5556666653 5678999988643210 111 0444443 367887764
No 491
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=78.97 E-value=25 Score=29.41 Aligned_cols=62 Identities=11% Similarity=0.083 Sum_probs=43.1
Q ss_pred CCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEE---EecCCCCeEEEEecCCCEEEE
Q 013578 215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMA---AISPNGRFLAAAAFTADVKVW 276 (440)
Q Consensus 215 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~---~~s~~~~~l~~~~~dg~i~i~ 276 (440)
..+....++.|+++|.|.+.|.+....+.++.....++.-. .|..-.-.+++++.||.|++.
T Consensus 191 d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 191 DEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred CCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 44455589999999999999999888888777655544222 222123457778889988764
No 492
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.93 E-value=60 Score=30.26 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEE
Q 013578 301 AVTWLCFAPNSEQIITASKDGTLRVW 326 (440)
Q Consensus 301 ~v~~~~~~p~~~~l~s~~~dg~i~iw 326 (440)
.|..+..++.|..++-.+.+|.+.++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEE
Confidence 46778889999999988888876654
No 493
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=76.59 E-value=53 Score=28.92 Aligned_cols=66 Identities=8% Similarity=0.112 Sum_probs=31.8
Q ss_pred CCCeEEEEecC-----CCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCc----EEEEecCc
Q 013578 260 NGRFLAAAAFT-----ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGT----LRVWNINV 330 (440)
Q Consensus 260 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~----i~iwd~~~ 330 (440)
++++++.|+.. ..+..||+.... +..+..+... ......+..-++++.+.|+.++. +.+||.++
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~------W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQE------WFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCC------eeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 56677777642 346677764322 2222222111 11111222235677777776543 45777775
Q ss_pred cc
Q 013578 331 RY 332 (440)
Q Consensus 331 ~~ 332 (440)
..
T Consensus 196 ~~ 197 (323)
T TIGR03548 196 NQ 197 (323)
T ss_pred Ce
Confidence 43
No 494
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=76.56 E-value=72 Score=30.41 Aligned_cols=195 Identities=15% Similarity=0.175 Sum_probs=103.5
Q ss_pred CCCCeEEEEeeC----------CceEEEEeCCCCceeeeeeC--CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCC
Q 013578 216 ADGSTIIASCSE----------GTDISIWHGKTGKLLGNVDT--NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKD 283 (440)
Q Consensus 216 ~~~~~~l~s~~~----------d~~i~vwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 283 (440)
.+|...+++... .+.|.+.| .+.+.+..+.. ....|.++.|--+--++++=-.--=+.+.|+.....
T Consensus 281 ~~G~LRvaTT~~~~~~~~~~~s~N~lyVLD-~~L~~vG~l~~la~gE~IysvRF~Gd~~Y~VTFrqvDPLfviDLsdP~~ 359 (521)
T PF09826_consen 281 YDGYLRVATTSGNWWWDSEDTSSNNLYVLD-EDLKIVGSLEGLAPGERIYSVRFMGDRAYLVTFRQVDPLFVIDLSDPAN 359 (521)
T ss_pred cCCEEEEEEecCcccccCCCCceEEEEEEC-CCCcEeEEccccCCCceEEEEEEeCCeEEEEEEeecCceEEEECCCCCC
Confidence 445555666542 34577777 55666666642 345678888877666666654433477778765543
Q ss_pred Cceeeeeeeeee--eccccceEEEEEcC-CCCEEEEEeCC------------CcEEEEecCccccccCCCCccccccc-c
Q 013578 284 GLVKAVTSVMQL--KGHKSAVTWLCFAP-NSEQIITASKD------------GTLRVWNINVRYHLDEDPKTLKVLPI-P 347 (440)
Q Consensus 284 ~~~~~~~~~~~~--~~h~~~v~~~~~~p-~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~-~ 347 (440)
.. .+-.+ .|.+. -+|| +..+|+--+.| =.|.+||+.......+ .....+ .
T Consensus 360 P~-----vlGeLKIPGfS~-----YLHP~~e~~LlGiG~~~~~~~~~~~~~GlKisLFDVSD~~~P~e----~~~~~iG~ 425 (521)
T PF09826_consen 360 PK-----VLGELKIPGFSD-----YLHPYDENHLLGIGKDTDEDEGTGWTQGLKISLFDVSDPANPKE----LDKEVIGD 425 (521)
T ss_pred Cc-----eeeEEECccchh-----ceeECCCCeEEEEcccCcccccccccceeEEEEEecCCCCCccE----eEEEEcCC
Confidence 22 12222 22222 2345 44455444432 1367899886543221 111100 0
Q ss_pred ccCCCCCeeeeeeEEeCCCCCEEEEec--------CCEEEEEEcCCcc---chhhhhccccC-------CeEEEEecCCC
Q 013578 348 LLDSNGATLQYDRLSLSSDGKILAATH--------GSTLQWLSVETGK---VLDTAEKAHEG-------EITCMAWAPKT 409 (440)
Q Consensus 348 ~~~~~~~~~~v~~~~~s~~g~~l~~~~--------~~~i~i~d~~~~~---~~~~~~~~h~~-------~v~~v~~~~~~ 409 (440)
......-...-.++.|.+...+|+.-- ...+++|++...+ ....+ .|.. .+....+..|
T Consensus 426 ~~s~S~a~~dhkAfl~~~~~~ll~~Pv~~~~~~~~~~g~~v~~i~~~~g~~~~g~i--~h~~~~~~~~~~~~R~lyi~d- 502 (521)
T PF09826_consen 426 RGSYSEALYDHKAFLFDKEKNLLAFPVSSSYGYFNFQGAYVFSIDPEDGFTLKGKI--THPSPDYYYSYQIQRSLYIGD- 502 (521)
T ss_pred CCccCccccCceEEEEeCCCCEEEEEEEEccCccccceEEEEEEeCCCCeEEEEEE--EccCcccccccceeEEEEECC-
Confidence 000001111123688888888777522 2577788776222 22232 3554 3666666665
Q ss_pred CCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 410 IPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 410 ~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
.|.+-+ ++.|+++++++.|
T Consensus 503 ---------~lYtvS-~~~i~~~~l~t~~ 521 (521)
T PF09826_consen 503 ---------TLYTVS-DNGIKAYDLNTLE 521 (521)
T ss_pred ---------EEEEEE-CCEEEEEehHhcC
Confidence 566766 6679999998764
No 495
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=76.09 E-value=30 Score=29.66 Aligned_cols=91 Identities=11% Similarity=0.155 Sum_probs=53.7
Q ss_pred eEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEe------cCCCEEEEEeEecCCCceeeeeeeeeeec-----c
Q 013578 230 DISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAA------FTADVKVWEIVYSKDGLVKAVTSVMQLKG-----H 298 (440)
Q Consensus 230 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-----h 298 (440)
.|++||..+.+-..--..-.+.|+.+.|..+.++++.|. ....+..||+.... ...+.+ -
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~---------w~~~~~~~s~~i 87 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT---------WSSLGGGSSNSI 87 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe---------eeecCCcccccC
Confidence 399999887655444344567799999987777777774 34457778875432 112222 2
Q ss_pred ccceEEEEEcC-CCC-EEEEEe-CCC--cEEEEecC
Q 013578 299 KSAVTWLCFAP-NSE-QIITAS-KDG--TLRVWNIN 329 (440)
Q Consensus 299 ~~~v~~~~~~p-~~~-~l~s~~-~dg--~i~iwd~~ 329 (440)
.++|..+.+.. |+. ..+.|. .++ .|..||=.
T Consensus 88 pgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 88 PGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred CCcEEEEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence 36788877743 333 333333 333 46666544
No 496
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=76.07 E-value=8.1 Score=19.27 Aligned_cols=26 Identities=15% Similarity=0.219 Sum_probs=20.4
Q ss_pred CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578 398 GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL 433 (440)
Q Consensus 398 ~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~ 433 (440)
..|.+++..+. +++.+.+-+.+|+|.
T Consensus 2 E~i~aia~g~~----------~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGDS----------WVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccCC----------EEEEEeCCCeEEecC
Confidence 35777877774 788888899999984
No 497
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=75.09 E-value=31 Score=34.01 Aligned_cols=151 Identities=15% Similarity=0.105 Sum_probs=86.7
Q ss_pred EEEEeeCCceEEEEeCCCCc---eeeee-eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee
Q 013578 221 IIASCSEGTDISIWHGKTGK---LLGNV-DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK 296 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~---~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 296 (440)
.+..++.++.+.++.-..+. ..... ......+.++.+++. .+..|.-||++-.|--...... ...+...+.
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~--Slgagl~dgt~a~y~rap~gSw---d~ep~~~~~ 623 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG--SLGAGLIDGTLAVYGRAPSGSW---DGEPNISIP 623 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc--ccccCccCCccccccCCCCCCC---CCCCccccc
Confidence 56778888888888765221 11111 222334555555543 3445555666554432111100 000122223
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCC
Q 013578 297 GHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGS 376 (440)
Q Consensus 297 ~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 376 (440)
....+|.+.++..| ++-++.+|.|.++...+...... ......+...|+.+.+..+|-+++..++.
T Consensus 624 ~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~-----------leahqee~~~Vthm~~~~~gVwvafasG~ 689 (925)
T KOG3522|consen 624 TGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWD-----------LEAHQEEAHSVTHMLYLDNGVWVAFASGD 689 (925)
T ss_pred cCCccccchhhhhc---eeeeecCCceEEEechhccccch-----------hHHHHhhcceEEEEEeeCCceEEEEcCCC
Confidence 34567888888654 56677789999998875422111 11122344568999999999999999988
Q ss_pred EEEEEEcCCccchh
Q 013578 377 TLQWLSVETGKVLD 390 (440)
Q Consensus 377 ~i~i~d~~~~~~~~ 390 (440)
.+++++.++-.-+.
T Consensus 690 ~~rlfhtetl~hlq 703 (925)
T KOG3522|consen 690 EERLFHTETLWHLQ 703 (925)
T ss_pred EEEEecccccCCcc
Confidence 88888777655443
No 498
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=74.79 E-value=99 Score=31.16 Aligned_cols=61 Identities=13% Similarity=0.195 Sum_probs=38.3
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcc---------c----EEEecC--CCCeEEEEec----------CCCEEE
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKN---------N----MAAISP--NGRFLAAAAF----------TADVKV 275 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v---------~----~~~~s~--~~~~l~~~~~----------dg~i~i 275 (440)
.++.++.|+.|.-.|.++|+.+..+..+. .+ . ...-.| .+..+++|+. +|.|+-
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~~G-~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGNNG-TVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecCCC-ceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 67778889999999999998886653211 11 0 011112 1345666642 678999
Q ss_pred EEeEecC
Q 013578 276 WEIVYSK 282 (440)
Q Consensus 276 ~d~~~~~ 282 (440)
+|.++++
T Consensus 341 ~Da~TGk 347 (764)
T TIGR03074 341 FDVNTGA 347 (764)
T ss_pred EECCCCc
Confidence 9987776
No 499
>PF15050 SCIMP: SCIMP protein
Probab=74.17 E-value=12 Score=26.50 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=13.4
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 013578 3 PVLSITVVSVVLGALIAII 21 (440)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ 21 (440)
.+.+|+++++++|..+++.
T Consensus 12 LAVaII~vS~~lglIlyCv 30 (133)
T PF15050_consen 12 LAVAIILVSVVLGLILYCV 30 (133)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566777888888777754
No 500
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=73.57 E-value=10 Score=19.48 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=20.1
Q ss_pred EEEEeeCCceEEEEeCCCCceeee
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGN 244 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~ 244 (440)
.++.++.++.+..+|..+|+.+..
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 577788899999999999887654
Done!