Query 013578
Match_columns 440
No_of_seqs 653 out of 3775
Neff 11.9
Searched_HMMs 29240
Date Mon Mar 25 13:12:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013578.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013578hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1got_B GT-beta; complex (GTP-b 100.0 3.4E-46 1.2E-50 329.7 36.4 293 83-433 47-340 (340)
2 3ow8_A WD repeat-containing pr 100.0 4.5E-46 1.5E-50 325.5 33.0 295 80-435 21-320 (321)
3 1vyh_C Platelet-activating fac 100.0 9.3E-46 3.2E-50 335.0 35.8 290 83-435 100-410 (410)
4 2pbi_B Guanine nucleotide-bind 100.0 2.8E-45 9.4E-50 325.3 37.9 297 82-433 55-354 (354)
5 3iz6_a 40S ribosomal protein R 100.0 8.4E-46 2.9E-50 332.2 31.9 311 82-438 57-377 (380)
6 2ynn_A Coatomer subunit beta'; 100.0 3.2E-44 1.1E-48 311.9 32.1 253 83-438 5-261 (304)
7 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.7E-43 5.7E-48 313.0 35.2 316 83-438 7-337 (345)
8 3frx_A Guanine nucleotide-bind 100.0 1.8E-43 6.3E-48 309.2 33.7 296 83-437 9-318 (319)
9 4g56_B MGC81050 protein; prote 100.0 8E-44 2.7E-48 316.1 28.2 309 74-437 25-344 (357)
10 4aow_A Guanine nucleotide-bind 100.0 4.1E-43 1.4E-47 310.7 32.6 297 84-438 31-339 (340)
11 1nr0_A Actin interacting prote 100.0 1E-42 3.5E-47 331.3 37.1 318 75-437 39-398 (611)
12 2xzm_R RACK1; ribosome, transl 100.0 2.2E-42 7.6E-47 305.8 34.2 299 81-438 11-342 (343)
13 4gqb_B Methylosome protein 50; 100.0 3.9E-43 1.3E-47 309.0 27.2 295 87-437 26-332 (344)
14 2hes_X YDR267CP; beta-propelle 100.0 7.5E-42 2.6E-46 300.4 34.3 310 83-436 6-328 (330)
15 4ery_A WD repeat-containing pr 100.0 3.8E-41 1.3E-45 294.2 38.0 294 82-435 14-311 (312)
16 1nr0_A Actin interacting prote 100.0 1.6E-41 5.6E-46 323.0 36.5 331 68-435 163-610 (611)
17 1erj_A Transcriptional repress 100.0 4.8E-41 1.6E-45 302.7 34.2 308 88-439 61-392 (393)
18 2ymu_A WD-40 repeat protein; u 100.0 9.1E-41 3.1E-45 317.1 30.8 296 69-433 278-577 (577)
19 2pm7_B Protein transport prote 100.0 4.4E-40 1.5E-44 284.8 30.0 258 84-435 2-284 (297)
20 3dm0_A Maltose-binding peripla 100.0 1.4E-39 4.8E-44 314.8 36.1 294 85-436 376-693 (694)
21 4e54_B DNA damage-binding prot 100.0 2.8E-40 9.6E-45 302.0 28.0 304 85-439 113-433 (435)
22 3gre_A Serine/threonine-protei 100.0 8.8E-41 3E-45 306.1 24.1 323 81-433 52-437 (437)
23 3zwl_B Eukaryotic translation 100.0 2.8E-39 9.5E-44 289.4 32.8 291 83-437 24-347 (369)
24 3bg1_A Protein SEC13 homolog; 100.0 3.2E-40 1.1E-44 288.2 23.9 257 85-435 7-292 (316)
25 2ymu_A WD-40 repeat protein; u 100.0 3.9E-39 1.3E-43 305.9 32.7 299 68-435 236-538 (577)
26 2ynn_A Coatomer subunit beta'; 100.0 1.9E-39 6.4E-44 281.9 27.4 268 67-437 27-303 (304)
27 3ei3_B DNA damage-binding prot 100.0 2.7E-39 9.1E-44 291.0 29.2 310 83-436 65-382 (383)
28 1gxr_A ESG1, transducin-like e 100.0 4.3E-38 1.5E-42 278.1 35.8 289 86-434 46-335 (337)
29 1sq9_A Antiviral protein SKI8; 100.0 1.3E-39 4.6E-44 294.5 26.1 327 82-438 7-397 (397)
30 4h5i_A Guanine nucleotide-exch 100.0 4.4E-39 1.5E-43 286.4 28.7 305 91-437 14-344 (365)
31 1k8k_C P40, ARP2/3 complex 41 100.0 2.8E-39 9.6E-44 289.8 24.5 305 87-437 4-362 (372)
32 3ow8_A WD repeat-containing pr 100.0 1.6E-38 5.6E-43 277.7 28.5 265 66-384 49-320 (321)
33 3k26_A Polycomb protein EED; W 100.0 8.1E-39 2.8E-43 286.1 27.1 314 85-436 12-366 (366)
34 4a11_B DNA excision repair pro 100.0 9.9E-38 3.4E-42 283.3 34.2 315 83-439 35-368 (408)
35 2pm9_A Protein WEB1, protein t 100.0 1.8E-38 6.3E-43 288.9 29.5 319 72-437 42-415 (416)
36 3odt_A Protein DOA1; ubiquitin 100.0 7.1E-38 2.4E-42 273.7 31.7 288 82-438 9-298 (313)
37 3dwl_C Actin-related protein 2 100.0 2.8E-39 9.5E-44 290.3 21.0 306 87-434 7-377 (377)
38 1r5m_A SIR4-interacting protei 100.0 3.3E-38 1.1E-42 288.0 28.4 318 67-435 60-424 (425)
39 3i2n_A WD repeat-containing pr 100.0 8.6E-38 2.9E-42 278.5 28.8 304 84-438 11-355 (357)
40 3jrp_A Fusion protein of prote 100.0 1.4E-37 4.9E-42 279.4 27.3 259 83-436 3-287 (379)
41 3f3f_A Nucleoporin SEH1; struc 100.0 3E-37 1E-41 274.0 29.0 264 84-438 4-339 (351)
42 1vyh_C Platelet-activating fac 100.0 7.7E-38 2.6E-42 283.1 25.5 263 67-383 122-409 (410)
43 4aez_A CDC20, WD repeat-contai 100.0 1.2E-36 4.2E-41 275.0 30.7 294 82-439 82-383 (401)
44 2j04_B YDR362CP, TAU91; beta p 100.0 7.7E-38 2.6E-42 288.7 22.2 321 67-437 175-518 (524)
45 4gqb_B Methylosome protein 50; 100.0 2.2E-36 7.5E-41 266.0 30.3 269 115-438 16-291 (344)
46 2pm9_A Protein WEB1, protein t 100.0 1.4E-37 4.7E-42 283.1 23.0 295 90-438 11-339 (416)
47 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.4E-36 1.9E-40 264.8 32.0 295 66-392 29-342 (345)
48 1r5m_A SIR4-interacting protei 100.0 1.2E-36 4.1E-41 277.7 27.9 293 84-437 36-362 (425)
49 4g56_B MGC81050 protein; prote 100.0 1.7E-36 5.7E-41 269.0 26.8 284 96-438 10-303 (357)
50 4gga_A P55CDC, cell division c 100.0 6.4E-36 2.2E-40 271.9 31.1 284 93-438 107-397 (420)
51 3v7d_B Cell division control p 100.0 6.9E-36 2.4E-40 275.8 30.8 320 67-434 134-461 (464)
52 1pgu_A Actin interacting prote 100.0 2.6E-35 9E-40 281.8 35.4 314 82-437 54-573 (615)
53 3dw8_B Serine/threonine-protei 100.0 5.4E-36 1.9E-40 275.2 29.0 300 89-438 26-375 (447)
54 1gxr_A ESG1, transducin-like e 100.0 1.9E-35 6.5E-40 261.1 30.4 288 90-438 8-298 (337)
55 3frx_A Guanine nucleotide-bind 100.0 2.7E-36 9.1E-41 263.8 24.4 278 66-386 31-318 (319)
56 3vl1_A 26S proteasome regulato 100.0 4.4E-36 1.5E-40 273.5 26.3 284 91-437 56-366 (420)
57 4ggc_A P55CDC, cell division c 100.0 3.9E-35 1.3E-39 257.0 30.7 285 93-439 27-318 (318)
58 3mkq_A Coatomer beta'-subunit; 100.0 1.5E-35 5.2E-40 292.6 30.3 253 83-438 5-261 (814)
59 2j04_B YDR362CP, TAU91; beta p 100.0 2.5E-36 8.6E-41 278.6 21.8 254 90-436 132-428 (524)
60 1pgu_A Actin interacting prote 100.0 3.7E-35 1.2E-39 280.8 30.7 314 68-436 176-614 (615)
61 2oaj_A Protein SNI1; WD40 repe 100.0 1.5E-35 5.2E-40 291.8 28.5 208 82-333 8-245 (902)
62 3sfz_A APAF-1, apoptotic pepti 100.0 1.6E-35 5.6E-40 304.9 30.0 354 68-439 672-1161(1249)
63 3sfz_A APAF-1, apoptotic pepti 100.0 3.9E-35 1.3E-39 302.2 32.6 316 83-438 607-1036(1249)
64 2hes_X YDR267CP; beta-propelle 100.0 1.7E-34 5.7E-39 253.6 31.2 284 67-385 26-328 (330)
65 2xzm_R RACK1; ribosome, transl 100.0 7E-35 2.4E-39 257.7 28.4 286 67-387 41-342 (343)
66 1got_B GT-beta; complex (GTP-b 100.0 7.2E-35 2.5E-39 257.2 28.4 266 66-382 68-340 (340)
67 3jro_A Fusion protein of prote 100.0 8.3E-36 2.8E-40 289.8 24.5 259 84-437 2-286 (753)
68 3vl1_A 26S proteasome regulato 100.0 3.2E-35 1.1E-39 267.9 26.4 307 68-436 71-419 (420)
69 1yfq_A Cell cycle arrest prote 100.0 4.2E-35 1.4E-39 259.5 26.0 295 85-433 5-321 (342)
70 3v7d_B Cell division control p 100.0 2.4E-34 8.2E-39 265.5 30.8 286 83-438 113-423 (464)
71 1erj_A Transcriptional repress 100.0 4.3E-34 1.5E-38 257.3 31.0 268 136-438 62-343 (393)
72 3mmy_A MRNA export factor; mRN 100.0 1.7E-34 6E-39 258.1 27.4 302 82-436 30-346 (368)
73 3iz6_a 40S ribosomal protein R 100.0 6.2E-35 2.1E-39 261.6 24.4 283 65-387 78-377 (380)
74 2aq5_A Coronin-1A; WD40 repeat 100.0 4.6E-35 1.6E-39 265.0 22.3 270 70-438 52-344 (402)
75 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.8E-33 6E-38 258.1 32.7 280 83-438 110-393 (445)
76 2ovr_B FBW7, F-BOX/WD repeat p 100.0 9E-34 3.1E-38 260.1 30.3 299 68-437 132-443 (445)
77 2pbi_B Guanine nucleotide-bind 100.0 6.7E-34 2.3E-38 252.1 28.2 268 66-382 77-354 (354)
78 1p22_A F-BOX/WD-repeat protein 100.0 4.4E-34 1.5E-38 261.2 27.8 276 86-438 128-416 (435)
79 2xyi_A Probable histone-bindin 100.0 3.3E-34 1.1E-38 261.3 26.8 258 84-436 121-410 (430)
80 2oaj_A Protein SNI1; WD40 repe 100.0 2.6E-34 9E-39 283.0 28.0 353 67-434 112-659 (902)
81 2j04_A TAU60, YPL007P, hypothe 100.0 5E-34 1.7E-38 256.6 24.6 273 89-435 13-296 (588)
82 4ery_A WD repeat-containing pr 100.0 6.9E-33 2.4E-37 241.9 30.4 252 130-438 15-270 (312)
83 2pm7_B Protein transport prote 100.0 5E-33 1.7E-37 240.5 27.1 235 67-384 23-284 (297)
84 3mkq_A Coatomer beta'-subunit; 100.0 5.2E-33 1.8E-37 274.5 30.0 308 68-436 28-386 (814)
85 4aow_A Guanine nucleotide-bind 100.0 5.7E-33 1.9E-37 245.6 27.1 276 67-387 53-339 (340)
86 3dw8_B Serine/threonine-protei 100.0 7E-33 2.4E-37 254.5 26.4 286 66-435 41-445 (447)
87 3dm0_A Maltose-binding peripla 100.0 1.2E-32 4.3E-37 266.2 28.0 281 66-384 396-692 (694)
88 3vu4_A KMHSV2; beta-propeller 100.0 2.9E-32 1E-36 241.7 27.5 293 83-438 11-338 (355)
89 1sq9_A Antiviral protein SKI8; 100.0 1.2E-32 4.2E-37 248.9 24.7 293 67-387 28-397 (397)
90 2aq5_A Coronin-1A; WD40 repeat 100.0 1.7E-32 5.9E-37 248.1 25.5 248 92-438 35-301 (402)
91 4e54_B DNA damage-binding prot 100.0 5.8E-33 2E-37 253.6 20.4 274 65-389 132-434 (435)
92 4gq1_A NUP37; propeller, trans 100.0 5.7E-33 1.9E-37 249.8 19.8 278 87-435 85-388 (393)
93 3lrv_A PRE-mRNA-splicing facto 100.0 4.1E-32 1.4E-36 240.0 24.4 276 97-434 42-331 (343)
94 3zwl_B Eukaryotic translation 100.0 2.4E-31 8.1E-36 237.9 27.9 286 67-392 46-353 (369)
95 4aez_A CDC20, WD repeat-contai 100.0 1.3E-31 4.5E-36 242.0 26.2 281 70-404 108-399 (401)
96 2w18_A PALB2, fancn, partner a 100.0 1.2E-31 4E-36 226.5 23.9 298 84-435 28-356 (356)
97 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.4E-31 1.5E-35 242.3 28.8 300 91-436 4-391 (450)
98 1k8k_C P40, ARP2/3 complex 41 100.0 2.6E-31 8.8E-36 238.0 26.3 287 68-389 23-365 (372)
99 3bg1_A Protein SEC13 homolog; 100.0 5.4E-32 1.9E-36 236.1 21.2 233 67-384 27-292 (316)
100 4h5i_A Guanine nucleotide-exch 100.0 6.6E-31 2.2E-35 233.7 27.1 206 88-386 130-344 (365)
101 3ei3_B DNA damage-binding prot 100.0 1.3E-31 4.4E-36 240.9 21.9 267 66-385 87-382 (383)
102 3i2n_A WD repeat-containing pr 100.0 1.8E-30 6.3E-35 231.0 28.0 289 74-388 43-356 (357)
103 3gre_A Serine/threonine-protei 100.0 7.1E-32 2.4E-36 247.0 19.3 278 98-439 34-362 (437)
104 3jrp_A Fusion protein of prote 100.0 2.5E-30 8.7E-35 232.1 29.0 234 67-385 25-287 (379)
105 3dwl_C Actin-related protein 2 100.0 6.1E-31 2.1E-35 236.0 23.1 258 137-435 10-280 (377)
106 3k26_A Polycomb protein EED; W 100.0 4E-31 1.4E-35 236.2 21.6 274 73-385 42-366 (366)
107 3odt_A Protein DOA1; ubiquitin 100.0 1.1E-30 3.9E-35 228.0 22.6 266 68-392 32-303 (313)
108 4gga_A P55CDC, cell division c 100.0 3.5E-30 1.2E-34 234.2 26.5 276 73-405 123-414 (420)
109 3bws_A Protein LP49; two-domai 100.0 1.2E-29 4E-34 232.0 24.3 290 85-436 117-432 (433)
110 3f3f_A Nucleoporin SEH1; struc 100.0 7.8E-30 2.7E-34 226.1 22.4 251 67-392 25-344 (351)
111 1yfq_A Cell cycle arrest prote 100.0 1.2E-29 4E-34 224.5 23.0 259 131-438 4-284 (342)
112 2j04_A TAU60, YPL007P, hypothe 100.0 3.1E-30 1.1E-34 232.1 19.2 288 63-425 25-350 (588)
113 1p22_A F-BOX/WD-repeat protein 100.0 1.6E-29 5.4E-34 231.0 24.3 284 68-407 146-434 (435)
114 3jro_A Fusion protein of prote 100.0 1.8E-29 6E-34 245.5 25.9 234 67-385 23-285 (753)
115 1l0q_A Surface layer protein; 100.0 1.9E-28 6.5E-33 220.9 27.7 268 104-438 3-277 (391)
116 4a11_B DNA excision repair pro 100.0 9.7E-29 3.3E-33 224.1 23.2 312 67-438 58-407 (408)
117 4ggc_A P55CDC, cell division c 100.0 4.4E-28 1.5E-32 212.1 26.1 260 72-387 42-317 (318)
118 3vu4_A KMHSV2; beta-propeller 100.0 4.4E-28 1.5E-32 214.8 25.9 251 133-437 14-272 (355)
119 2xyi_A Probable histone-bindin 100.0 1.1E-28 3.8E-33 224.8 22.4 230 83-387 173-412 (430)
120 1l0q_A Surface layer protein; 100.0 1.2E-27 4E-32 215.7 28.4 309 71-438 8-344 (391)
121 4gq1_A NUP37; propeller, trans 100.0 1.2E-28 4.1E-33 221.6 21.7 212 219-439 101-351 (393)
122 2vdu_B TRNA (guanine-N(7)-)-me 100.0 8.4E-28 2.9E-32 220.5 26.7 200 209-434 105-337 (450)
123 3lrv_A PRE-mRNA-splicing facto 100.0 1.6E-27 5.3E-32 210.7 26.9 231 146-437 44-293 (343)
124 2w18_A PALB2, fancn, partner a 100.0 2.7E-27 9.1E-32 200.1 22.6 215 92-383 112-355 (356)
125 3mmy_A MRNA export factor; mRN 100.0 2.1E-27 7.1E-32 212.2 22.2 200 221-438 56-306 (368)
126 1nir_A Nitrite reductase; hemo 99.9 1.9E-25 6.4E-30 207.9 28.9 322 72-439 156-517 (543)
127 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.4E-25 4.8E-30 202.7 24.8 284 90-437 61-388 (415)
128 3bws_A Protein LP49; two-domai 99.9 1.4E-25 4.6E-30 205.1 23.3 291 90-438 59-392 (433)
129 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.4E-25 8.3E-30 201.2 21.2 276 76-409 94-409 (415)
130 3u4y_A Uncharacterized protein 99.9 9.1E-23 3.1E-27 179.3 30.4 284 97-437 3-305 (331)
131 1nir_A Nitrite reductase; hemo 99.9 1.1E-23 3.9E-28 195.9 24.9 282 98-439 144-461 (543)
132 3o4h_A Acylamino-acid-releasin 99.9 3.7E-24 1.3E-28 202.9 21.3 278 84-435 13-314 (582)
133 1k32_A Tricorn protease; prote 99.9 8.7E-24 3E-28 213.1 25.1 312 83-438 44-463 (1045)
134 1ri6_A Putative isomerase YBHE 99.9 7.8E-23 2.7E-27 180.6 28.1 284 105-435 7-307 (343)
135 2ojh_A Uncharacterized protein 99.9 2.3E-23 7.9E-28 180.0 23.6 255 72-427 19-293 (297)
136 2ecf_A Dipeptidyl peptidase IV 99.9 2.7E-23 9.1E-28 202.9 25.2 289 91-436 36-413 (741)
137 1xfd_A DIP, dipeptidyl aminope 99.9 2.5E-23 8.5E-28 202.6 24.3 289 92-436 17-393 (723)
138 3vgz_A Uncharacterized protein 99.9 2.7E-22 9.2E-27 178.0 28.3 281 90-426 39-334 (353)
139 1pby_B Quinohemoprotein amine 99.9 9.1E-23 3.1E-27 179.8 24.8 274 104-438 2-312 (337)
140 2z3z_A Dipeptidyl aminopeptida 99.9 5.5E-22 1.9E-26 192.5 27.4 294 92-438 82-437 (706)
141 2oit_A Nucleoporin 214KDA; NH2 99.9 8.1E-23 2.8E-27 185.2 19.8 215 90-386 35-279 (434)
142 1jmx_B Amine dehydrogenase; ox 99.9 5.1E-22 1.7E-26 175.9 24.3 251 96-438 4-327 (349)
143 3hfq_A Uncharacterized protein 99.9 9.2E-22 3.1E-26 174.1 25.4 259 88-438 36-321 (347)
144 1k32_A Tricorn protease; prote 99.9 3.4E-22 1.2E-26 201.6 24.1 290 90-438 294-639 (1045)
145 1ri6_A Putative isomerase YBHE 99.9 3.8E-21 1.3E-25 169.8 27.0 283 88-409 34-334 (343)
146 2ojh_A Uncharacterized protein 99.9 2.7E-21 9.2E-26 166.9 23.4 226 108-439 17-261 (297)
147 2ecf_A Dipeptidyl peptidase IV 99.9 9.6E-22 3.3E-26 191.9 21.4 292 92-436 109-459 (741)
148 2oit_A Nucleoporin 214KDA; NH2 99.9 7.6E-21 2.6E-25 172.2 24.7 166 89-331 90-279 (434)
149 3vgz_A Uncharacterized protein 99.9 2E-20 6.7E-25 165.9 25.4 247 139-438 41-305 (353)
150 1xfd_A DIP, dipeptidyl aminope 99.9 3.1E-20 1.1E-24 180.8 29.0 296 72-409 34-421 (723)
151 3u4y_A Uncharacterized protein 99.9 3.4E-20 1.2E-24 162.8 26.5 264 85-388 34-307 (331)
152 3scy_A Hypothetical bacterial 99.9 3.8E-19 1.3E-23 158.2 31.9 287 90-406 48-360 (361)
153 2z3z_A Dipeptidyl aminopeptida 99.9 1.1E-20 3.6E-25 183.6 22.3 285 93-438 27-393 (706)
154 1jof_A Carboxy-CIS,CIS-muconat 99.9 7.1E-19 2.4E-23 156.4 31.8 288 105-436 4-341 (365)
155 3scy_A Hypothetical bacterial 99.9 1.1E-18 3.8E-23 155.1 32.7 288 103-435 13-336 (361)
156 1z68_A Fibroblast activation p 99.9 2.7E-20 9.3E-25 181.0 19.6 289 95-436 19-391 (719)
157 3pe7_A Oligogalacturonate lyas 99.8 8.1E-20 2.8E-24 164.2 19.5 292 84-435 23-381 (388)
158 4a5s_A Dipeptidyl peptidase 4 99.8 2.2E-19 7.4E-24 174.7 21.4 266 91-439 16-356 (740)
159 1pby_B Quinohemoprotein amine 99.8 4.9E-19 1.7E-23 155.8 19.4 245 93-393 35-318 (337)
160 1q7f_A NHL, brain tumor CG1071 99.8 2.1E-17 7.1E-22 141.8 27.0 247 88-439 26-283 (286)
161 1z68_A Fibroblast activation p 99.8 8.4E-19 2.9E-23 170.5 19.1 307 74-438 35-445 (719)
162 3hfq_A Uncharacterized protein 99.8 2.4E-17 8.2E-22 145.7 26.8 220 85-389 79-323 (347)
163 3fvz_A Peptidyl-glycine alpha- 99.8 3E-17 1E-21 143.5 25.1 193 214-437 98-323 (329)
164 3azo_A Aminopeptidase; POP fam 99.8 5.4E-17 1.9E-21 156.3 28.6 306 83-438 15-371 (662)
165 3o4h_A Acylamino-acid-releasin 99.8 4.3E-18 1.5E-22 161.3 17.6 231 139-434 22-274 (582)
166 3c5m_A Oligogalacturonate lyas 99.8 1.4E-17 4.7E-22 150.0 19.5 295 91-438 35-386 (396)
167 2gop_A Trilobed protease; beta 99.8 8.2E-16 2.8E-20 135.8 29.0 261 92-435 15-330 (347)
168 1jof_A Carboxy-CIS,CIS-muconat 99.8 7.5E-17 2.6E-21 143.3 22.0 262 90-386 38-342 (365)
169 2oiz_A Aromatic amine dehydrog 99.7 2.4E-16 8.3E-21 139.3 22.0 279 84-409 44-359 (361)
170 2xdw_A Prolyl endopeptidase; a 99.7 9.7E-16 3.3E-20 148.4 27.3 264 89-438 122-416 (710)
171 1jmx_B Amine dehydrogenase; ox 99.7 1.9E-16 6.4E-21 140.0 18.7 153 218-392 10-182 (349)
172 2oiz_A Aromatic amine dehydrog 99.7 2.4E-15 8.3E-20 132.9 25.0 290 102-437 14-335 (361)
173 3e5z_A Putative gluconolactona 99.7 4E-15 1.4E-19 128.1 25.8 245 84-436 20-286 (296)
174 2bkl_A Prolyl endopeptidase; m 99.7 5.3E-16 1.8E-20 149.8 21.5 261 88-438 117-399 (695)
175 1rwi_B Serine/threonine-protei 99.7 6E-15 2.1E-19 125.3 25.2 240 93-438 25-266 (270)
176 2dg1_A DRP35, lactonase; beta 99.7 1.7E-14 5.7E-19 126.6 27.3 246 83-426 36-300 (333)
177 3pe7_A Oligogalacturonate lyas 99.7 1.9E-15 6.5E-20 135.6 20.6 242 143-438 40-331 (388)
178 3azo_A Aminopeptidase; POP fam 99.7 4.2E-15 1.4E-19 143.1 23.2 209 84-329 60-322 (662)
179 4a5s_A Dipeptidyl peptidase 4 99.7 1.5E-15 5.2E-20 147.7 17.2 200 213-438 23-296 (740)
180 3c5m_A Oligogalacturonate lyas 99.7 1.2E-14 4.1E-19 130.8 20.4 241 140-438 37-331 (396)
181 2z2n_A Virginiamycin B lyase; 99.6 1.5E-12 5.2E-17 112.1 32.3 286 87-438 10-297 (299)
182 1qks_A Cytochrome CD1 nitrite 99.6 7.5E-13 2.6E-17 122.9 31.5 307 92-438 197-540 (567)
183 3no2_A Uncharacterized protein 99.6 1.7E-13 5.7E-18 116.0 23.7 218 102-423 4-230 (276)
184 1yr2_A Prolyl oligopeptidase; 99.6 7.6E-14 2.6E-18 135.7 24.1 260 89-438 160-443 (741)
185 2dg1_A DRP35, lactonase; beta 99.6 3.9E-14 1.3E-18 124.2 18.9 185 221-435 58-262 (333)
186 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 7.9E-13 2.7E-17 114.8 27.0 252 86-436 12-299 (314)
187 3dsm_A Uncharacterized protein 99.6 4.3E-13 1.5E-17 116.9 24.8 238 92-438 44-303 (328)
188 2bkl_A Prolyl endopeptidase; m 99.6 6.2E-14 2.1E-18 135.4 19.9 182 225-435 143-348 (695)
189 1q7f_A NHL, brain tumor CG1071 99.6 7E-13 2.4E-17 113.5 23.9 203 89-388 74-283 (286)
190 1qks_A Cytochrome CD1 nitrite 99.6 1.9E-12 6.6E-17 120.2 26.8 277 101-437 165-478 (567)
191 2xdw_A Prolyl endopeptidase; a 99.6 8.1E-13 2.8E-17 128.0 24.3 182 229-438 151-370 (710)
192 3no2_A Uncharacterized protein 99.6 7.1E-13 2.4E-17 112.1 20.6 187 221-438 7-197 (276)
193 2mad_H Methylamine dehydrogena 99.5 2.8E-11 9.5E-16 106.9 30.5 293 99-438 28-352 (373)
194 3fvz_A Peptidyl-glycine alpha- 99.5 7.7E-13 2.6E-17 115.5 18.8 207 89-385 88-322 (329)
195 3sjl_D Methylamine dehydrogena 99.5 1.1E-11 3.9E-16 107.9 25.3 300 97-438 38-365 (386)
196 3hrp_A Uncharacterized protein 99.5 9.5E-12 3.2E-16 111.5 25.4 255 92-435 131-409 (409)
197 2qc5_A Streptogramin B lactona 99.5 6.6E-11 2.3E-15 101.8 29.1 241 89-435 17-259 (300)
198 2gop_A Trilobed protease; beta 99.5 4.1E-12 1.4E-16 112.0 21.1 223 92-384 59-330 (347)
199 3g4e_A Regucalcin; six bladed 99.5 2.8E-11 9.6E-16 103.9 25.7 225 89-409 10-253 (297)
200 3e5z_A Putative gluconolactona 99.5 1.2E-11 4.3E-16 106.2 22.7 228 84-390 61-291 (296)
201 3iuj_A Prolyl endopeptidase; h 99.5 5.6E-12 1.9E-16 121.5 22.0 257 88-438 125-407 (693)
202 1rwi_B Serine/threonine-protei 99.5 1.3E-11 4.3E-16 104.6 21.8 202 90-388 65-267 (270)
203 1xip_A Nucleoporin NUP159; bet 99.5 1E-12 3.5E-17 114.9 14.6 130 221-372 99-230 (388)
204 2mad_H Methylamine dehydrogena 99.5 8.2E-11 2.8E-15 103.9 26.9 251 96-392 70-357 (373)
205 3c75_H MADH, methylamine dehyd 99.5 5.7E-11 1.9E-15 105.5 25.5 295 101-438 82-404 (426)
206 1xip_A Nucleoporin NUP159; bet 99.5 1.4E-12 4.7E-17 114.2 14.8 161 213-409 44-225 (388)
207 2qe8_A Uncharacterized protein 99.4 1.2E-11 4.1E-16 108.6 19.4 188 228-427 92-312 (343)
208 1yr2_A Prolyl oligopeptidase; 99.4 1.1E-11 3.6E-16 120.7 20.6 179 229-435 189-392 (741)
209 3dr2_A Exported gluconolactona 99.4 6E-11 2E-15 102.3 22.4 239 83-431 36-302 (305)
210 3sjl_D Methylamine dehydrogena 99.4 2.2E-11 7.7E-16 106.0 18.8 265 96-408 82-384 (386)
211 2z2n_A Virginiamycin B lyase; 99.4 2.5E-10 8.6E-15 98.1 24.7 237 139-435 15-254 (299)
212 2ghs_A AGR_C_1268P; regucalcin 99.4 6.1E-10 2.1E-14 96.9 27.2 220 93-409 50-283 (326)
213 2qc5_A Streptogramin B lactona 99.4 5.4E-10 1.8E-14 96.1 26.7 238 90-435 60-299 (300)
214 3dsm_A Uncharacterized protein 99.4 2.9E-11 1E-15 105.3 17.9 185 219-438 54-255 (328)
215 3c75_H MADH, methylamine dehyd 99.3 1.9E-10 6.4E-15 102.2 19.9 252 96-392 122-409 (426)
216 1mda_H Methylamine dehydrogena 99.3 1.8E-10 6.2E-15 100.6 18.7 267 84-407 59-366 (368)
217 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 3.2E-09 1.1E-13 91.9 23.3 220 90-385 69-299 (314)
218 3hrp_A Uncharacterized protein 99.2 2.9E-09 9.9E-14 95.4 20.3 200 211-437 135-355 (409)
219 3g4e_A Regucalcin; six bladed 99.2 4.7E-09 1.6E-13 90.0 20.5 192 214-438 20-231 (297)
220 2hz6_A Endoplasmic reticulum t 99.2 1.2E-11 4.2E-16 109.4 4.3 181 221-438 11-194 (369)
221 2ece_A 462AA long hypothetical 99.2 9.9E-09 3.4E-13 90.1 22.1 176 228-424 163-399 (462)
222 2hz6_A Endoplasmic reticulum t 99.2 3E-11 1E-15 106.9 6.4 158 221-409 51-215 (369)
223 1mda_H Methylamine dehydrogena 99.2 1.6E-09 5.3E-14 94.7 16.7 199 221-438 34-348 (368)
224 1kb0_A Quinohemoprotein alcoho 99.1 2E-08 6.7E-13 96.0 23.8 193 228-439 189-510 (677)
225 3dr2_A Exported gluconolactona 99.1 2.5E-08 8.5E-13 85.8 21.4 219 85-383 79-304 (305)
226 1yiq_A Quinohemoprotein alcoho 99.1 3.6E-08 1.2E-12 94.4 24.4 194 228-439 182-508 (689)
227 1fwx_A Nitrous oxide reductase 99.1 5E-09 1.7E-13 95.3 17.4 254 102-425 100-407 (595)
228 3iuj_A Prolyl endopeptidase; h 99.1 3.3E-09 1.1E-13 102.2 17.2 180 227-437 153-360 (693)
229 2qe8_A Uncharacterized protein 99.1 2E-08 6.8E-13 88.0 19.7 234 88-374 63-309 (343)
230 3q7m_A Lipoprotein YFGL, BAMB; 99.0 1.7E-07 5.9E-12 83.2 25.5 181 221-438 145-339 (376)
231 2ghs_A AGR_C_1268P; regucalcin 99.0 3.9E-08 1.3E-12 85.4 20.2 188 214-435 56-259 (326)
232 3hxj_A Pyrrolo-quinoline quino 99.0 1.2E-07 4.1E-12 82.6 20.7 182 215-438 145-326 (330)
233 1npe_A Nidogen, entactin; glyc 98.9 6.3E-07 2.1E-11 75.4 23.2 185 221-438 50-240 (267)
234 3hxj_A Pyrrolo-quinoline quino 98.9 6.3E-08 2.2E-12 84.3 16.6 174 221-434 109-282 (330)
235 1fwx_A Nitrous oxide reductase 98.9 5.9E-08 2E-12 88.4 16.1 203 215-436 98-361 (595)
236 2iwa_A Glutamine cyclotransfer 98.9 9.6E-08 3.3E-12 78.8 15.9 197 212-437 26-238 (266)
237 2iwa_A Glutamine cyclotransfer 98.8 9.8E-07 3.3E-11 72.8 20.9 154 221-386 78-238 (266)
238 1kb0_A Quinohemoprotein alcoho 98.8 2.2E-07 7.4E-12 88.9 19.3 165 230-409 284-531 (677)
239 2ece_A 462AA long hypothetical 98.8 5.3E-07 1.8E-11 79.3 19.5 191 216-435 93-351 (462)
240 3q7m_A Lipoprotein YFGL, BAMB; 98.8 2.3E-06 7.8E-11 76.0 24.3 176 221-433 190-375 (376)
241 1npe_A Nidogen, entactin; glyc 98.8 2.5E-06 8.6E-11 71.7 22.9 220 92-409 36-262 (267)
242 1yiq_A Quinohemoprotein alcoho 98.8 7.2E-07 2.5E-11 85.5 21.7 180 214-409 242-529 (689)
243 2fp8_A Strictosidine synthase; 98.8 2.1E-06 7.1E-11 74.4 22.6 115 301-438 186-315 (322)
244 3nok_A Glutaminyl cyclase; bet 98.8 2.1E-07 7.3E-12 75.6 14.7 178 218-425 64-255 (268)
245 1kv9_A Type II quinohemoprotei 98.7 1.1E-06 3.9E-11 83.8 19.3 193 228-438 177-490 (668)
246 3nol_A Glutamine cyclotransfer 98.7 3.7E-06 1.3E-10 68.4 18.9 141 221-375 99-244 (262)
247 3nol_A Glutamine cyclotransfer 98.7 9.7E-07 3.3E-11 71.9 15.4 176 220-425 54-245 (262)
248 1w6s_A Methanol dehydrogenase 98.7 1.6E-05 5.6E-10 74.3 25.8 196 227-439 180-506 (599)
249 3mbr_X Glutamine cyclotransfer 98.6 3.5E-06 1.2E-10 68.0 16.3 176 221-425 33-224 (243)
250 1k3i_A Galactose oxidase precu 98.6 2.7E-05 9.2E-10 74.5 25.0 277 96-425 190-530 (656)
251 2ad6_A Methanol dehydrogenase 98.6 8E-06 2.7E-10 76.4 20.6 55 375-439 443-497 (571)
252 2xe4_A Oligopeptidase B; hydro 98.6 3.1E-05 1.1E-09 75.2 25.1 65 88-159 169-241 (751)
253 3qqz_A Putative uncharacterize 98.5 0.00012 4.3E-09 59.9 24.0 126 249-384 120-252 (255)
254 1flg_A Protein (quinoprotein e 98.5 5.5E-05 1.9E-09 70.8 24.8 54 375-438 465-518 (582)
255 3qqz_A Putative uncharacterize 98.5 4.8E-05 1.6E-09 62.4 21.2 207 212-435 32-252 (255)
256 3nok_A Glutaminyl cyclase; bet 98.5 2.2E-05 7.6E-10 63.9 19.0 140 221-373 108-253 (268)
257 3v64_C Agrin; beta propeller, 98.5 0.0004 1.4E-08 60.6 28.5 184 222-437 88-276 (349)
258 2p4o_A Hypothetical protein; p 98.4 0.00012 4.1E-09 62.7 23.4 92 302-409 171-269 (306)
259 3mbr_X Glutamine cyclotransfer 98.4 5.7E-05 2E-09 61.0 19.6 141 221-374 77-222 (243)
260 4a2l_A BT_4663, two-component 98.4 0.00033 1.1E-08 68.8 29.0 195 222-438 228-438 (795)
261 4a2l_A BT_4663, two-component 98.4 0.0014 4.7E-08 64.4 33.2 291 91-437 262-572 (795)
262 3tc9_A Hypothetical hydrolase; 98.4 0.00048 1.7E-08 61.9 26.9 157 93-279 138-300 (430)
263 4hw6_A Hypothetical protein, I 98.4 0.001 3.5E-08 59.8 28.3 203 92-329 139-373 (433)
264 3v65_B Low-density lipoprotein 98.4 0.00045 1.5E-08 61.2 25.6 185 221-437 130-319 (386)
265 2xe4_A Oligopeptidase B; hydro 98.3 3.6E-05 1.2E-09 74.7 19.2 193 213-433 180-395 (751)
266 2xbg_A YCF48-like protein; pho 98.3 0.0015 5.1E-08 56.4 26.6 153 252-437 124-279 (327)
267 1ijq_A LDL receptor, low-densi 98.3 0.0017 5.7E-08 55.8 27.0 181 226-438 49-240 (316)
268 2fp8_A Strictosidine synthase; 98.2 0.00016 5.3E-09 62.5 19.4 194 209-434 21-267 (322)
269 3v9f_A Two-component system se 98.2 0.0029 9.8E-08 62.0 29.1 302 92-436 66-392 (781)
270 3v9f_A Two-component system se 98.1 0.0068 2.3E-07 59.3 30.8 297 92-436 211-524 (781)
271 3sov_A LRP-6, low-density lipo 98.1 0.0031 1.1E-07 54.0 24.8 184 223-438 51-240 (318)
272 2p4o_A Hypothetical protein; p 98.1 0.0014 4.7E-08 56.0 22.6 198 210-435 35-241 (306)
273 3p5b_L Low density lipoprotein 98.1 0.0044 1.5E-07 55.1 26.1 159 249-438 158-322 (400)
274 3v64_C Agrin; beta propeller, 98.0 0.0037 1.3E-07 54.5 24.0 144 226-392 135-282 (349)
275 1k3i_A Galactose oxidase precu 98.0 0.00051 1.7E-08 65.7 19.6 241 92-374 243-529 (656)
276 2xbg_A YCF48-like protein; pho 98.0 0.0058 2E-07 52.7 27.4 157 249-434 162-320 (327)
277 3sov_A LRP-6, low-density lipo 98.0 0.0054 1.8E-07 52.5 23.7 148 223-392 95-245 (318)
278 3v65_B Low-density lipoprotein 98.0 0.0035 1.2E-07 55.5 23.2 144 226-392 178-325 (386)
279 1ijq_A LDL receptor, low-densi 98.0 0.0064 2.2E-07 52.1 25.9 148 223-392 93-245 (316)
280 3p5b_L Low density lipoprotein 98.0 0.0085 2.9E-07 53.2 26.7 151 221-392 173-327 (400)
281 3kya_A Putative phosphatase; s 97.9 0.0069 2.4E-07 54.7 24.4 276 93-391 140-481 (496)
282 2ad6_A Methanol dehydrogenase 97.9 0.00083 2.8E-08 62.8 18.2 54 229-282 272-337 (571)
283 1kv9_A Type II quinohemoprotei 97.9 0.00018 6.2E-09 68.7 13.9 201 221-438 68-335 (668)
284 3amr_A 3-phytase; beta-propell 97.9 0.0018 6.1E-08 55.2 18.1 194 221-435 42-262 (355)
285 2ism_A Putative oxidoreductase 97.8 0.013 4.3E-07 51.1 25.6 63 91-156 30-95 (352)
286 3m0c_C LDL receptor, low-densi 97.8 0.015 5.1E-07 56.4 26.1 150 221-392 485-639 (791)
287 1n7d_A LDL receptor, low-densi 97.8 0.00027 9.2E-09 67.8 13.8 171 215-406 461-634 (699)
288 3m0c_C LDL receptor, low-densi 97.8 0.03 1E-06 54.3 27.1 186 221-437 438-633 (791)
289 4hw6_A Hypothetical protein, I 97.8 0.0024 8.4E-08 57.3 18.4 195 211-434 143-372 (433)
290 1flg_A Protein (quinoprotein e 97.7 0.0012 4.1E-08 61.8 16.4 31 217-247 332-364 (582)
291 3pbp_A Nucleoporin NUP82; beta 97.7 0.0046 1.6E-07 53.9 17.6 149 228-381 40-208 (452)
292 3tc9_A Hypothetical hydrolase; 97.7 0.00081 2.8E-08 60.4 13.7 154 251-435 138-300 (430)
293 1n7d_A LDL receptor, low-densi 97.7 0.00037 1.3E-08 66.8 12.1 196 211-437 410-615 (699)
294 2p9w_A MAL S 1 allergenic prot 97.6 0.015 5.1E-07 49.2 19.2 150 221-385 27-215 (334)
295 1w6s_A Methanol dehydrogenase 97.6 0.0027 9.2E-08 59.4 16.3 203 221-438 64-344 (599)
296 2p9w_A MAL S 1 allergenic prot 97.5 0.006 2.1E-07 51.6 16.0 99 228-329 99-214 (334)
297 3a9g_A Putative uncharacterize 97.5 0.043 1.5E-06 47.7 26.7 61 91-156 28-93 (354)
298 3amr_A 3-phytase; beta-propell 97.5 0.04 1.4E-06 47.1 25.5 161 222-392 90-271 (355)
299 1tl2_A L10, protein (tachylect 97.5 0.013 4.3E-07 46.2 15.9 172 221-409 6-193 (236)
300 3sre_A PON1, serum paraoxonase 97.4 0.039 1.3E-06 47.7 19.7 168 227-426 81-287 (355)
301 3kya_A Putative phosphatase; s 97.4 0.023 8E-07 51.4 18.8 161 212-383 144-339 (496)
302 3das_A Putative oxidoreductase 97.3 0.068 2.3E-06 46.0 25.3 66 84-149 24-90 (347)
303 4a0p_A LRP6, LRP-6, low-densit 97.3 0.13 4.3E-06 48.6 28.7 179 226-438 56-239 (628)
304 1tl2_A L10, protein (tachylect 97.3 0.045 1.5E-06 43.1 16.9 114 252-380 90-205 (236)
305 3ei3_A DNA damage-binding prot 97.3 0.21 7.3E-06 50.7 29.9 34 91-124 553-593 (1158)
306 2g8s_A Glucose/sorbosone dehyd 97.0 0.16 5.3E-06 44.2 24.6 66 91-156 17-86 (353)
307 3s94_A LRP-6, low-density lipo 97.0 0.069 2.4E-06 50.4 18.8 192 215-438 48-245 (619)
308 3pbp_A Nucleoporin NUP82; beta 96.9 0.032 1.1E-06 48.8 14.0 74 358-436 68-158 (452)
309 4a0p_A LRP6, LRP-6, low-densit 96.8 0.38 1.3E-05 45.4 25.5 139 227-390 100-242 (628)
310 2xzh_A Clathrin heavy chain 1; 96.6 0.25 8.7E-06 41.6 23.2 190 215-439 75-293 (365)
311 2xzh_A Clathrin heavy chain 1; 96.4 0.34 1.2E-05 40.8 24.3 204 97-334 72-294 (365)
312 1cru_A Protein (soluble quinop 96.3 0.61 2.1E-05 42.0 27.7 64 91-156 26-97 (454)
313 3ii7_A Kelch-like protein 7; p 96.3 0.44 1.5E-05 40.3 21.8 184 221-437 58-273 (306)
314 3ii7_A Kelch-like protein 7; p 96.2 0.47 1.6E-05 40.1 17.3 104 221-332 14-129 (306)
315 1cru_A Protein (soluble quinop 96.2 0.3 1E-05 44.0 16.6 61 251-317 28-97 (454)
316 2vpj_A Kelch-like protein 12; 96.1 0.51 1.7E-05 39.7 19.4 182 221-437 65-279 (301)
317 3ei3_A DNA damage-binding prot 96.0 1.7 5.8E-05 44.3 28.2 280 96-435 331-635 (1158)
318 1zgk_A Kelch-like ECH-associat 95.9 0.58 2E-05 39.6 16.8 176 229-437 90-288 (308)
319 3s94_A LRP-6, low-density lipo 95.9 1.2 4.1E-05 42.0 29.9 158 92-281 84-244 (619)
320 2g8s_A Glucose/sorbosone dehyd 95.9 0.27 9.3E-06 42.7 14.6 149 251-409 19-209 (353)
321 1xi4_A Clathrin heavy chain; a 95.8 0.96 3.3E-05 46.4 19.3 165 229-406 125-309 (1630)
322 2xn4_A Kelch-like protein 2; s 95.6 0.85 2.9E-05 38.3 18.2 184 221-437 64-277 (302)
323 2vpj_A Kelch-like protein 12; 95.6 0.89 3.1E-05 38.2 18.7 103 221-331 162-279 (301)
324 1zgk_A Kelch-like ECH-associat 95.5 0.96 3.3E-05 38.2 16.7 184 221-437 27-241 (308)
325 2xn4_A Kelch-like protein 2; s 95.5 0.95 3.2E-05 38.1 18.5 184 221-437 18-230 (302)
326 4asc_A Kelch repeat and BTB do 95.4 0.91 3.1E-05 38.5 16.0 94 231-332 69-176 (315)
327 1bpo_A Protein (clathrin); cla 95.2 1.5 5.3E-05 38.6 29.2 266 111-435 46-330 (494)
328 1bpo_A Protein (clathrin); cla 95.1 1.6 5.6E-05 38.5 27.0 206 97-334 71-293 (494)
329 2be1_A Serine/threonine-protei 94.7 1.8 6.1E-05 37.0 16.0 109 221-335 12-135 (339)
330 1xi4_A Clathrin heavy chain; a 94.7 2.2 7.6E-05 43.9 17.9 190 215-439 74-292 (1630)
331 3ott_A Two-component system se 94.7 3.4 0.00012 40.1 23.8 186 221-436 75-260 (758)
332 2woz_A Kelch repeat and BTB do 94.6 1.8 6.3E-05 36.6 15.9 92 231-332 80-186 (318)
333 2uvk_A YJHT; unknown function, 94.4 2.2 7.5E-05 36.8 16.7 49 229-278 168-224 (357)
334 3a9g_A Putative uncharacterize 94.4 2.3 7.9E-05 36.8 22.1 64 251-318 260-330 (354)
335 2ism_A Putative oxidoreductase 94.2 2.5 8.6E-05 36.5 22.4 64 252-318 270-333 (352)
336 3ott_A Two-component system se 93.9 5 0.00017 38.9 25.7 181 230-437 212-402 (758)
337 3s25_A Hypothetical 7-bladed b 93.8 2.6 8.9E-05 35.4 17.3 140 214-387 60-218 (302)
338 2zwa_A Leucine carboxyl methyl 93.3 3.9 0.00014 39.2 16.6 154 217-387 397-579 (695)
339 3sbq_A Nitrous-oxide reductase 92.4 0.46 1.6E-05 43.2 8.1 79 252-331 325-409 (638)
340 2uvk_A YJHT; unknown function, 92.3 5 0.00017 34.5 15.1 57 221-279 22-94 (357)
341 2wg3_C Hedgehog-interacting pr 91.1 3 0.0001 37.5 12.2 58 251-310 15-79 (463)
342 3qhy_B Beta-lactamase inhibito 90.8 6.2 0.00021 32.7 17.7 166 228-435 41-206 (282)
343 4asc_A Kelch repeat and BTB do 90.8 6.7 0.00023 33.0 19.6 182 221-437 7-222 (315)
344 3das_A Putative oxidoreductase 90.1 8.4 0.00029 33.0 24.1 110 208-318 33-158 (347)
345 2zwa_A Leucine carboxyl methyl 89.4 15 0.00053 35.1 20.9 115 217-333 500-638 (695)
346 3q6k_A 43.2 kDa salivary prote 89.0 11 0.00037 32.8 17.0 175 230-409 124-335 (381)
347 3l6v_A GYRA, DNA gyrase subuni 86.8 15 0.0005 31.9 23.4 264 99-383 3-314 (370)
348 3sre_A PON1, serum paraoxonase 86.6 15 0.0005 31.7 25.0 167 91-270 111-287 (355)
349 1zi0_A DNA gyrase subunit A; b 86.5 14 0.00047 31.1 24.7 215 101-330 1-226 (307)
350 1suu_A DNA gyrase subunit A; t 86.3 14 0.00048 31.1 27.3 217 100-331 5-232 (312)
351 2wg3_C Hedgehog-interacting pr 85.7 20 0.00068 32.3 26.1 57 92-149 14-79 (463)
352 3qhy_B Beta-lactamase inhibito 85.1 15 0.00051 30.4 21.7 28 93-123 25-52 (282)
353 2be1_A Serine/threonine-protei 84.0 1.9 6.4E-05 36.9 5.9 108 312-438 11-132 (339)
354 3uc1_A DNA gyrase subunit A; D 84.0 19 0.00064 30.6 18.7 198 221-436 5-228 (327)
355 3uc1_A DNA gyrase subunit A; D 83.9 19 0.00065 30.6 23.4 299 103-427 3-321 (327)
356 4gq2_M Nucleoporin NUP120; bet 83.9 18 0.00062 36.1 13.7 33 399-439 237-269 (950)
357 1wp5_A Topoisomerase IV; broke 83.9 19 0.00064 30.5 23.6 265 101-385 3-277 (323)
358 2woz_A Kelch repeat and BTB do 83.5 19 0.00064 30.2 19.2 182 221-437 18-232 (318)
359 3sbq_A Nitrous-oxide reductase 83.2 1.6 5.5E-05 39.8 5.3 77 203-280 319-408 (638)
360 4gq2_M Nucleoporin NUP120; bet 83.0 5.7 0.0002 39.6 9.7 34 92-125 236-269 (950)
361 3s25_A Hypothetical 7-bladed b 80.9 24 0.0008 29.6 24.0 171 215-434 112-291 (302)
362 3q6k_A 43.2 kDa salivary prote 80.6 28 0.00096 30.2 12.2 130 299-436 151-306 (381)
363 3kci_A Probable E3 ubiquitin-p 77.2 36 0.0012 29.6 22.9 201 221-435 64-292 (389)
364 1suu_A DNA gyrase subunit A; t 75.9 35 0.0012 28.7 20.4 197 221-436 10-231 (312)
365 4hvt_A Ritya.17583.B, post-pro 71.1 75 0.0026 30.5 16.0 192 214-437 137-382 (711)
366 3no0_A DNA gyrase subunit A; D 69.2 47 0.0016 27.3 16.7 156 221-385 82-246 (276)
367 4a9v_A PHOX; hydrolase, beta-p 65.4 17 0.00058 33.5 7.1 53 357-409 477-542 (592)
368 3l6v_A GYRA, DNA gyrase subuni 62.4 77 0.0026 27.4 20.2 160 216-385 5-180 (370)
369 1zi0_A DNA gyrase subunit A; b 61.8 70 0.0024 26.7 21.5 198 221-435 5-225 (307)
370 3zwu_A Alkaline phosphatase PH 61.6 18 0.00063 33.6 6.8 52 358-409 478-542 (592)
371 4fhn_B Nucleoporin NUP120; pro 61.5 14 0.00047 37.9 6.5 36 301-336 239-274 (1139)
372 4fhn_B Nucleoporin NUP120; pro 56.1 5.5 0.00019 40.7 2.6 33 93-125 239-271 (1139)
373 3no0_A DNA gyrase subunit A; D 55.5 85 0.0029 25.7 16.6 163 250-436 24-196 (276)
374 3zwu_A Alkaline phosphatase PH 51.2 45 0.0015 31.1 7.5 63 93-157 477-549 (592)
375 3f7f_A Nucleoporin NUP120; nuc 47.6 23 0.00077 33.7 5.0 33 301-335 223-255 (729)
376 1wp5_A Topoisomerase IV; broke 45.1 1.4E+02 0.0048 25.2 19.8 200 221-436 7-225 (323)
377 4a9v_A PHOX; hydrolase, beta-p 40.8 98 0.0034 28.6 7.8 39 230-268 510-549 (592)
378 1zvt_A Topoisomerase IV subuni 39.1 1.5E+02 0.0052 23.9 14.9 155 221-385 4-163 (256)
379 2rdd_B UPF0092 membrane protei 35.7 28 0.00096 18.1 2.2 10 19-28 17-26 (37)
380 1q47_A Semaphorin 3A; beta pro 35.0 1.1E+02 0.0037 27.8 7.3 64 262-325 422-487 (495)
381 3oky_B Putative uncharacterize 34.4 1.2E+02 0.004 28.0 7.4 75 252-326 405-496 (565)
382 1q90_G Cytochrome B6F complex 32.2 50 0.0017 17.0 2.6 29 3-31 4-34 (37)
383 3arc_X Photosystem II PSBX pro 32.1 49 0.0017 17.5 2.6 18 1-18 2-19 (39)
384 4gz8_A Semaphorin-3A; multi-do 31.6 1.9E+02 0.0066 27.4 8.5 63 262-325 430-495 (667)
385 3nvq_A Semaphorin-7A; beta-pro 30.5 1.6E+02 0.0054 27.4 7.6 63 262-325 381-444 (590)
386 3hx6_A Type 4 fimbrial biogene 28.7 3.5E+02 0.012 25.0 10.3 165 103-282 85-286 (570)
387 1afo_A Glycophorin A; integral 27.6 73 0.0025 16.7 3.0 22 2-23 9-30 (40)
388 1q47_A Semaphorin 3A; beta pro 25.6 2.2E+02 0.0077 25.7 7.6 56 220-275 422-487 (495)
389 3b7f_A Glycosyl hydrolase, BNR 25.4 3.2E+02 0.011 23.4 17.5 152 260-433 21-205 (394)
390 1vf5_G Protein PET G; photosyn 23.3 48 0.0016 17.1 1.6 29 3-31 4-34 (37)
391 3al9_A Plexin-A2; beta-propell 22.8 2.2E+02 0.0076 26.1 7.2 63 261-325 413-476 (539)
392 1olz_A Semaphorin 4D; developm 22.2 3E+02 0.01 26.1 8.1 60 262-325 416-477 (663)
393 3f7f_A Nucleoporin NUP120; nuc 21.5 5.5E+02 0.019 24.7 16.0 22 418-439 232-253 (729)
394 1pi7_A VPU protein, U ORF prot 20.8 1E+02 0.0035 16.0 3.0 23 1-24 1-23 (36)
395 3of7_A Regulator of chromosome 20.7 4.5E+02 0.015 23.4 23.8 72 259-334 155-236 (473)
396 3nvq_A Semaphorin-7A; beta-pro 20.5 3.5E+02 0.012 25.1 7.9 56 220-275 381-444 (590)
No 1
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.4e-46 Score=329.67 Aligned_cols=293 Identities=18% Similarity=0.258 Sum_probs=238.3
Q ss_pred ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
...+|.+|.+.|++++|+||+++|++|+.||+|++||+.++. .......|...|.+++|+|+++++++++.+
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d--- 118 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-----KVHAIPLRSSWVMTCAYAPSGNYVACGGLD--- 118 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC-----EEEEEECSSSCEEEEEECTTSSEEEEEETT---
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC-----cceEeecCCccEEEEEECCCCCEEEEEeCC---
Confidence 467899999999999999999999999999999999998764 233445677889999999999999999887
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL 242 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 242 (440)
..+.+|+....... .........|...+. ++.+++++ .+++++.|++|++||+.+++.+
T Consensus 119 ~~v~iw~~~~~~~~------------~~~~~~~~~h~~~v~-------~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~ 177 (340)
T 1got_B 119 NICSIYNLKTREGN------------VRVSRELAGHTGYLS-------CCRFLDDN--QIVTSSGDTTCALWDIETGQQT 177 (340)
T ss_dssp CEEEEEETTTCSBS------------CEEEEEEECCSSCEE-------EEEEEETT--EEEEEETTSCEEEEETTTTEEE
T ss_pred CeEEEEECccCCCc------------ceeEEEecCCCccEE-------EEEECCCC--cEEEEECCCcEEEEECCCCcEE
Confidence 46677765432100 000001111111111 12223444 5889999999999999999999
Q ss_pred eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCc
Q 013578 243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGT 322 (440)
Q Consensus 243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~ 322 (440)
..+..|...|.+++|+|++++|++|+.|+.|++||++.+. ....+.+|...|.+++|+|++.+|++++.|++
T Consensus 178 ~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~--------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~ 249 (340)
T 1got_B 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM--------CRQTFTGHESDINAICFFPNGNAFATGSDDAT 249 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS--------EEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe--------eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc
Confidence 9999999999999999999999999999999999997654 67788899999999999999999999999999
Q ss_pred EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeE
Q 013578 323 LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEIT 401 (440)
Q Consensus 323 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~ 401 (440)
|++||+++...+.. .....+...|.+++|+|+|++|++|+ |+.|++||..+++.+..+ .+|.+.|.
T Consensus 250 v~iwd~~~~~~~~~------------~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~-~~h~~~v~ 316 (340)
T 1got_B 250 CRLFDLRADQELMT------------YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL-AGHDNRVS 316 (340)
T ss_dssp EEEEETTTTEEEEE------------ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEE
T ss_pred EEEEECCCCcEEEE------------EccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEe-ecCCCcEE
Confidence 99999986543211 11223334588999999999999876 899999999999988888 59999999
Q ss_pred EEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578 402 CMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL 433 (440)
Q Consensus 402 ~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~ 433 (440)
+++|+|++ .+|+||+.||+|+||+
T Consensus 317 ~~~~s~dg--------~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 317 CLGVTDDG--------MAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEECTTS--------SCEEEEETTSCEEEEC
T ss_pred EEEEcCCC--------CEEEEEcCCccEEecC
Confidence 99999998 8999999999999997
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.5e-46 Score=325.49 Aligned_cols=295 Identities=16% Similarity=0.234 Sum_probs=244.2
Q ss_pred CccccccccccCcceeEEEEccC----CCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEE
Q 013578 80 HPLDVNTLKGHGDSVTGLCFSSD----GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVV 155 (440)
Q Consensus 80 ~~~~~~~l~~H~~~V~~l~~s~d----g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~ 155 (440)
....++.+++|.+.|++++|+|+ +.+|+||+.|++|+||++..... .......+|...|.+++|++++..+++
T Consensus 21 ~g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~---~~~~~l~gh~~~v~~~~~~~~~~~l~s 97 (321)
T 3ow8_A 21 YGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL---DLQWSLEGHQLGVVSVDISHTLPIAAS 97 (321)
T ss_dssp CEEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE---EEEEEECCCSSCEEEEEECSSSSEEEE
T ss_pred hhheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe---eeeeeeccCCCCEEEEEECCCCCEEEE
Confidence 34456778899999999999985 67999999999999999976532 233446788899999999999999999
Q ss_pred EeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEe
Q 013578 156 ATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWH 235 (440)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd 235 (440)
++.| ..+.+|+........... .+ ......+.++|+++ ++++++.|+.|++|+
T Consensus 98 ~s~D---~~i~lWd~~~~~~~~~~~----------------~~-------~~~~~~~~~spdg~-~l~~g~~dg~v~i~~ 150 (321)
T 3ow8_A 98 SSLD---AHIRLWDLENGKQIKSID----------------AG-------PVDAWTLAFSPDSQ-YLATGTHVGKVNIFG 150 (321)
T ss_dssp EETT---SEEEEEETTTTEEEEEEE----------------CC-------TTCCCCEEECTTSS-EEEEECTTSEEEEEE
T ss_pred EeCC---CcEEEEECCCCCEEEEEe----------------CC-------CccEEEEEECCCCC-EEEEEcCCCcEEEEE
Confidence 9887 577777765432111000 00 01122345688888 999999999999999
Q ss_pred CCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEE
Q 013578 236 GKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315 (440)
Q Consensus 236 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 315 (440)
+++++....+..+...+.+++|+|++++|++|+.||.|++||++.++ .+..+.+|..+|.+++|+|++++|+
T Consensus 151 ~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~--------~~~~~~~h~~~v~~l~~spd~~~l~ 222 (321)
T 3ow8_A 151 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK--------LLHTLEGHAMPIRSLTFSPDSQLLV 222 (321)
T ss_dssp TTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--------EEEEECCCSSCCCEEEECTTSCEEE
T ss_pred cCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc--------EEEEEcccCCceeEEEEcCCCCEEE
Confidence 99999999998888899999999999999999999999999987654 6778889999999999999999999
Q ss_pred EEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhc
Q 013578 316 TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEK 394 (440)
Q Consensus 316 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~ 394 (440)
+++.|++|++||+++.... ....+|...|.+++|+|++++|++++ |+.|++||+.+++++..+ .
T Consensus 223 s~s~dg~i~iwd~~~~~~~--------------~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~ 287 (321)
T 3ow8_A 223 TASDDGYIKIYDVQHANLA--------------GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF-F 287 (321)
T ss_dssp EECTTSCEEEEETTTCCEE--------------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-C
T ss_pred EEcCCCeEEEEECCCccee--------------EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE-c
Confidence 9999999999999865432 12235667799999999999999865 899999999999999888 5
Q ss_pred cccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 395 AHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 395 ~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
+|.+.|++++|+|++ .+|++++.||+|++||++
T Consensus 288 ~h~~~v~~v~~s~~g--------~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 288 DHQDQVWGVKYNGNG--------SKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CCSSCEEEEEECTTS--------SEEEEEETTCCEEEEECC
T ss_pred CCCCcEEEEEECCCC--------CEEEEEeCCCeEEEEeCC
Confidence 899999999999998 899999999999999975
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=9.3e-46 Score=335.03 Aligned_cols=290 Identities=20% Similarity=0.328 Sum_probs=242.5
Q ss_pred ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
....+.+|.++|++++|+|++++|++|+.||+|+|||+.++.. .....+|...|.+++|+|+++++++++.|
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~-----~~~l~~h~~~V~~v~~~~~~~~l~sgs~D--- 171 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-----ERTLKGHTDSVQDISFDHSGKLLASCSAD--- 171 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC-----CEEECCCSSCEEEEEECTTSSEEEEEETT---
T ss_pred ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-----EEEEeccCCcEEEEEEcCCCCEEEEEeCC---
Confidence 4667899999999999999999999999999999999987753 34556788999999999999999999988
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL 242 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 242 (440)
..+.+|+....... .....|... ...+.++|++. ++++++.|++|++||+.++.++
T Consensus 172 ~~i~iwd~~~~~~~----------------~~~~~h~~~-------V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~ 227 (410)
T 1vyh_C 172 MTIKLWDFQGFECI----------------RTMHGHDHN-------VSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCV 227 (410)
T ss_dssp SCCCEEETTSSCEE----------------ECCCCCSSC-------EEEEEECSSSS-EEEEEETTSEEEEEETTTCCEE
T ss_pred CeEEEEeCCCCcee----------------EEEcCCCCC-------EEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEE
Confidence 45566655432110 001112221 12234477887 8999999999999999999999
Q ss_pred eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCC------------
Q 013578 243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPN------------ 310 (440)
Q Consensus 243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~------------ 310 (440)
..+..|...+.++.+++++++|++|+.|+.|++||+.... ....+.+|...|.+++|+|+
T Consensus 228 ~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~--------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 299 (410)
T 1vyh_C 228 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE--------CKAELREHRHVVECISWAPESSYSSISEATGS 299 (410)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--------EEEEECCCSSCEEEEEECCSCGGGGGGGCCSC
T ss_pred EEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc--------eeeEecCCCceEEEEEEcCcccccchhhhccc
Confidence 9999999999999999999999999999999999986654 56778899999999999996
Q ss_pred --------CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEE
Q 013578 311 --------SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWL 381 (440)
Q Consensus 311 --------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~ 381 (440)
+.+|++|+.|++|++||++++.++. ...+|...|.+++|+|+|++|++|+ |+.|++|
T Consensus 300 ~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~--------------~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vw 365 (410)
T 1vyh_C 300 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM--------------TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365 (410)
T ss_dssp C-------CCEEEEEETTSEEEEEETTTTEEEE--------------EEECCSSCEEEEEECSSSSCEEEEETTTEEEEE
T ss_pred cccccCCCCCEEEEEeCCCeEEEEECCCCceEE--------------EEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 6689999999999999998765431 1235666799999999999998865 8999999
Q ss_pred EcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 382 SVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 382 d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
|..+++++..+ .+|...|++++|+|++ .+|++|+.||+|++|+++
T Consensus 366 d~~~~~~~~~~-~~h~~~v~~l~~~~~~--------~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 366 DYKNKRCMKTL-NAHEHFVTSLDFHKTA--------PYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CCTTSCCCEEE-ECCSSCEEEEEECSSS--------SCEEEEETTSEEEEEC--
T ss_pred ECCCCceEEEE-cCCCCcEEEEEEcCCC--------CEEEEEeCCCcEEEEeCC
Confidence 99999998888 5899999999999998 899999999999999864
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.8e-45 Score=325.26 Aligned_cols=297 Identities=18% Similarity=0.281 Sum_probs=237.9
Q ss_pred cccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578 82 LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS 161 (440)
Q Consensus 82 ~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~ 161 (440)
...++|.||.+.|++++|+||+++|+||+.||+|+|||..+... ......+...|.+++|+|++..+++++.+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~-----~~~~~~~~~~v~~~~~sp~g~~lasg~~d-- 127 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK-----EHAVTMPCTWVMACAYAPSGCAIACGGLD-- 127 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----EEEEECSSSCCCEEEECTTSSEEEEESTT--
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc-----ceEEecCCCCEEEEEECCCCCEEEEeeCC--
Confidence 34678999999999999999999999999999999999876642 23334566889999999999999999887
Q ss_pred cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578 162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL 241 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 241 (440)
..+.+|+.......... .... ....|.. ....+.+++++. .+++++.|++|++||+++++.
T Consensus 128 -~~i~v~~~~~~~~~~~~-------~~~~---~~~~h~~-------~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~~ 188 (354)
T 2pbi_B 128 -NKCSVYPLTFDKNENMA-------AKKK---SVAMHTN-------YLSACSFTNSDM-QILTASGDGTCALWDVESGQL 188 (354)
T ss_dssp -SEEEEEECCCCTTCCSG-------GGCE---EEEECSS-------CEEEEEECSSSS-EEEEEETTSEEEEEETTTCCE
T ss_pred -CCEEEEEEecccccccc-------ccce---eeeccCC-------cEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCeE
Confidence 45555544321100000 0000 0011111 122344577777 899999999999999999999
Q ss_pred eeeeeCCCCcccEEEecC--CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC
Q 013578 242 LGNVDTNQLKNNMAAISP--NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK 319 (440)
Q Consensus 242 ~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~ 319 (440)
+..+..|...+.+++++| ++++|++|+.||.|++||++.++ .+..+.+|...|.+++|+|++.+|++++.
T Consensus 189 ~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~--------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~ 260 (354)
T 2pbi_B 189 LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ--------CVQAFETHESDVNSVRYYPSGDAFASGSD 260 (354)
T ss_dssp EEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC--------EEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc--------EEEEecCCCCCeEEEEEeCCCCEEEEEeC
Confidence 999999999999999987 57899999999999999997665 67778899999999999999999999999
Q ss_pred CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccC
Q 013578 320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEG 398 (440)
Q Consensus 320 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~ 398 (440)
|++|++||++....+. ..........+.+++|+|+|++|++|+ |+.|++||+.+++.+..+ .+|.+
T Consensus 261 D~~v~lwd~~~~~~~~------------~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l-~~h~~ 327 (354)
T 2pbi_B 261 DATCRLYDLRADREVA------------IYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL-FGHEN 327 (354)
T ss_dssp TSCEEEEETTTTEEEE------------EECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE-CCCSS
T ss_pred CCeEEEEECCCCcEEE------------EEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEE-ECCCC
Confidence 9999999998654321 111122234578899999999999876 899999999999988887 58999
Q ss_pred CeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578 399 EITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL 433 (440)
Q Consensus 399 ~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~ 433 (440)
.|++++|+|++ .+|++|+.||+|+||+
T Consensus 328 ~v~~l~~spdg--------~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 328 RVSTLRVSPDG--------TAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CEEEEEECTTS--------SCEEEEETTSEEEEEC
T ss_pred cEEEEEECCCC--------CEEEEEcCCCCEEecC
Confidence 99999999998 8999999999999996
No 5
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=8.4e-46 Score=332.17 Aligned_cols=311 Identities=19% Similarity=0.263 Sum_probs=240.9
Q ss_pred cccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578 82 LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS 161 (440)
Q Consensus 82 ~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~ 161 (440)
.+.++|.||.+.|++++|+|++++|+||+.||+|+|||+.++. .......|...|.+++|+|+++++++++.+
T Consensus 57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~-----~~~~~~~h~~~v~~~~~s~~g~~las~~~d-- 129 (380)
T 3iz6_a 57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ-----KTHAIKLHCPWVMECAFAPNGQSVACGGLD-- 129 (380)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-----EEEEEECCCTTCCCCEECTTSSEEEECCSS--
T ss_pred EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----cceEEecCCCCEEEEEECCCCCEEEEeeCC--
Confidence 3567899999999999999999999999999999999998764 334455678899999999999999999887
Q ss_pred cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578 162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL 241 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 241 (440)
..+.+|+.......... .+ .......|.. ....+.+.|++...+++|+.|++|++||+.+++.
T Consensus 130 -~~v~iw~~~~~~~~~~~-----~~----~~~~~~gh~~-------~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~ 192 (380)
T 3iz6_a 130 -SACSIFNLSSQADRDGN-----MP----VSRVLTGHKG-------YASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR 192 (380)
T ss_dssp -SCCEEEECCCCSSCCCS-----ST----TCCBCCCCSS-------CCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE
T ss_pred -CcEEEEECCCCccccCC-----cc----ceeeccCCCc-------ceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE
Confidence 45555554332110000 00 0000111111 1223344666555899999999999999999998
Q ss_pred eeee-----eCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEE
Q 013578 242 LGNV-----DTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315 (440)
Q Consensus 242 ~~~~-----~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 315 (440)
+..+ ..|...+.++++++ ++++|++|+.|+.|++||++... ..+..+.+|.+.|.+++|+|++.+|+
T Consensus 193 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~-------~~~~~~~~h~~~v~~v~~~p~~~~l~ 265 (380)
T 3iz6_a 193 ISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS-------RAVRTYHGHEGDINSVKFFPDGQRFG 265 (380)
T ss_dssp EEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC-------CCCEEECCCSSCCCEEEECTTSSEEE
T ss_pred EEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC-------cceEEECCcCCCeEEEEEecCCCeEE
Confidence 8776 56788899999977 88999999999999999986432 25677889999999999999999999
Q ss_pred EEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhh--
Q 013578 316 TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTA-- 392 (440)
Q Consensus 316 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~-- 392 (440)
+++.|++|++||++++..+.... ........+...+.+++|+|+|++|++|+ |+.|++||..+++.+..+
T Consensus 266 s~s~D~~i~lwd~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 338 (380)
T 3iz6_a 266 TGSDDGTCRLFDMRTGHQLQVYN-------REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT 338 (380)
T ss_dssp EECSSSCEEEEETTTTEEEEEEC-------CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred EEcCCCeEEEEECCCCcEEEEec-------ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEec
Confidence 99999999999999775542111 11111122233478999999999999876 899999999988876544
Q ss_pred -hccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 393 -EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 393 -~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
..+|.+.|++++|+|++ .+|+||+.||+|++|++...+
T Consensus 339 ~~~~h~~~v~~l~~s~dg--------~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 339 LQNSHEGRISCLGLSSDG--------SALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SCSSCCCCCCEEEECSSS--------SEEEEECTTSCEEEEECCSSS
T ss_pred ccCCCCCceEEEEECCCC--------CEEEEeeCCCCEEEEecCCCc
Confidence 25799999999999998 899999999999999998754
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.2e-44 Score=311.92 Aligned_cols=253 Identities=16% Similarity=0.260 Sum_probs=216.6
Q ss_pred ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
..++|.+|.+.|++++|+|+|++|++|+.||+|++||+.++. .......|..+|.+++|+|+++
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~----------- 68 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV-----EVRSIQVTETPVRAGKFIARKN----------- 68 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----EEEEEECCSSCEEEEEEEGGGT-----------
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-----eeEEeeccCCcEEEEEEeCCCC-----------
Confidence 356799999999999999999999999999999999998754 3344456778889999988755
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL 242 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 242 (440)
++++|+.|++|++||+.+++.+
T Consensus 69 ----------------------------------------------------------~l~s~s~d~~i~vwd~~~~~~~ 90 (304)
T 2ynn_A 69 ----------------------------------------------------------WIIVGSDDFRIRVFNYNTGEKV 90 (304)
T ss_dssp ----------------------------------------------------------EEEEEETTSEEEEEETTTCCEE
T ss_pred ----------------------------------------------------------EEEEECCCCEEEEEECCCCcEE
Confidence 7888899999999999999999
Q ss_pred eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC-CCCEEEEEeCCC
Q 013578 243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP-NSEQIITASKDG 321 (440)
Q Consensus 243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~dg 321 (440)
..+..|...|.+++|+|++++|++|+.|++|++||++.+. .....+.+|...|.+++|+| ++.+|++|+.|+
T Consensus 91 ~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-------~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~ 163 (304)
T 2ynn_A 91 VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (304)
T ss_dssp EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT-------EEEEEECCCCSCEEEEEECTTCTTEEEEEETTS
T ss_pred EEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc-------chhhhhcccCCcEEEEEECCCCCCEEEEEeCCC
Confidence 9999999999999999999999999999999999986543 24566889999999999999 678999999999
Q ss_pred cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC--CCCEEEEec-CCEEEEEEcCCccchhhhhccccC
Q 013578 322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS--DGKILAATH-GSTLQWLSVETGKVLDTAEKAHEG 398 (440)
Q Consensus 322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~ 398 (440)
+|++||++...... ....++...+..+.|+| ++.+|++++ |+.|++||+.+++++..+ .+|..
T Consensus 164 ~v~iwd~~~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~-~~h~~ 229 (304)
T 2ynn_A 164 TVKVWSLGQSTPNF-------------TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGHMS 229 (304)
T ss_dssp EEEEEETTCSSCSE-------------EEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE-ECCSS
T ss_pred eEEEEECCCCCccc-------------eeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee-CCCCC
Confidence 99999997543210 00112334567788876 778888865 899999999999999888 59999
Q ss_pred CeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 399 EITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 399 ~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
.|.+++|+|++ .+|++|+.||+|++||+.+++
T Consensus 230 ~v~~~~~~p~~--------~~l~s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 230 NVSFAVFHPTL--------PIIISGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp CEEEEEECSSS--------SEEEEEETTSCEEEEETTTCC
T ss_pred CEEEEEECCCC--------CEEEEEcCCCeEEEEECCCCc
Confidence 99999999998 899999999999999998865
No 7
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.7e-43 Score=312.99 Aligned_cols=316 Identities=17% Similarity=0.242 Sum_probs=234.0
Q ss_pred ccccccccCc-ceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578 83 DVNTLKGHGD-SVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS 161 (440)
Q Consensus 83 ~~~~l~~H~~-~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~ 161 (440)
.+.++.+|.+ .|++++|+|+|++||+|+.|++|+||++..+... .......+|...|.+++|+|++++|++++.|
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~--~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D-- 82 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI--CKSVLSEGHQRTVRKVAWSPCGNYLASASFD-- 82 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE--EEEEECSSCSSCEEEEEECTTSSEEEEEETT--
T ss_pred EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce--eeeeeccccCCcEEEEEECCCCCEEEEEECC--
Confidence 5678899988 9999999999999999999999999999865321 1122345788999999999999999999987
Q ss_pred cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc-
Q 013578 162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK- 240 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~- 240 (440)
..+.+|+...... ........|... ...+.++|+++ +|++++.|++|++||+.++.
T Consensus 83 -~~v~iw~~~~~~~--------------~~~~~~~~h~~~-------v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~ 139 (345)
T 3fm0_A 83 -ATTCIWKKNQDDF--------------ECVTTLEGHENE-------VKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDE 139 (345)
T ss_dssp -SCEEEEEECCC-E--------------EEEEEECCCSSC-------EEEEEECTTSS-EEEEEETTSCEEEEEECTTSC
T ss_pred -CcEEEEEccCCCe--------------EEEEEccCCCCC-------ceEEEEeCCCC-EEEEEECCCeEEEEECCCCCC
Confidence 4555665432200 000011112211 22344578888 99999999999999998764
Q ss_pred --eeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe
Q 013578 241 --LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS 318 (440)
Q Consensus 241 --~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~ 318 (440)
++..+..|...|.+++|+|++++|++|+.|+.|++||+.... ......+.+|...|.+++|+|++++|++++
T Consensus 140 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~------~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s 213 (345)
T 3fm0_A 140 YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDD------WVCCATLEGHESTVWSLAFDPSGQRLASCS 213 (345)
T ss_dssp EEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTE------EEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred eEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCC------EEEEEEecCCCCceEEEEECCCCCEEEEEe
Confidence 456677889999999999999999999999999999986532 124567889999999999999999999999
Q ss_pred CCCcEEEEecCccccccCCCCcc--ccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccch------
Q 013578 319 KDGTLRVWNINVRYHLDEDPKTL--KVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVL------ 389 (440)
Q Consensus 319 ~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~------ 389 (440)
.|++|++||.............. ............|...|.+++|+|++..|++++ |+.|++|+...+...
T Consensus 214 ~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~ 293 (345)
T 3fm0_A 214 DDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFS 293 (345)
T ss_dssp TTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEE
T ss_pred CCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEE
Confidence 99999999975432211100000 000000011122566799999999999888865 899999998765321
Q ss_pred --hhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 390 --DTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 390 --~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
.....+|.+.|++++|+|+++ .+|++|+.||+|++|++.+.+
T Consensus 294 ~~~~~~~~h~~~V~~v~~~p~~~-------~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 294 LTAHLHQAHSQDVNCVAWNPKEP-------GLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp EEEEETTSSSSCEEEEEECSSST-------TEEEEEETTSCEEEEEECC--
T ss_pred EEeeecccccCcEeEeEEeCCCc-------eEEEEcCCCCcEEEEEecCCC
Confidence 112247999999999999861 489999999999999998765
No 8
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.8e-43 Score=309.16 Aligned_cols=296 Identities=21% Similarity=0.267 Sum_probs=237.1
Q ss_pred ccccccccCcceeEEEEccCC-CEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578 83 DVNTLKGHGDSVTGLCFSSDG-KCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS 161 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~dg-~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~ 161 (440)
...+|.||.+.|++++|+|++ ++|+||+.|++|++|++...............+|...|.+++|+|+++++++++.|
T Consensus 9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D-- 86 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD-- 86 (319)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT--
T ss_pred EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC--
Confidence 356799999999999999965 89999999999999999754433333455667899999999999999999999987
Q ss_pred cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578 162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL 241 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 241 (440)
..+.+|+....... .....|...+ ..+.+++++. ++++++.|++|++||++ ++.
T Consensus 87 -~~v~~wd~~~~~~~----------------~~~~~h~~~v-------~~~~~~~~~~-~l~s~s~D~~i~vwd~~-~~~ 140 (319)
T 3frx_A 87 -KTLRLWDVATGETY----------------QRFVGHKSDV-------MSVDIDKKAS-MIISGSRDKTIKVWTIK-GQC 140 (319)
T ss_dssp -SEEEEEETTTTEEE----------------EEEECCSSCE-------EEEEECTTSC-EEEEEETTSCEEEEETT-SCE
T ss_pred -CEEEEEECCCCCee----------------EEEccCCCcE-------EEEEEcCCCC-EEEEEeCCCeEEEEECC-CCe
Confidence 57788876543211 0111122111 2233467777 99999999999999996 667
Q ss_pred eeeeeCCCCcccEEEecCC------CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEE
Q 013578 242 LGNVDTNQLKNNMAAISPN------GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315 (440)
Q Consensus 242 ~~~~~~~~~~v~~~~~s~~------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 315 (440)
+..+..|...+.++.++|. +..|++++.|+.|++||++... ....+.+|...|.+++|+|++++|+
T Consensus 141 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--------~~~~~~~h~~~v~~~~~sp~g~~l~ 212 (319)
T 3frx_A 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ--------IEADFIGHNSNINTLTASPDGTLIA 212 (319)
T ss_dssp EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE--------EEEEECCCCSCEEEEEECTTSSEEE
T ss_pred EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch--------hheeecCCCCcEEEEEEcCCCCEEE
Confidence 7888889999999999985 4589999999999999986543 5667889999999999999999999
Q ss_pred EEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhh--
Q 013578 316 TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAE-- 393 (440)
Q Consensus 316 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~-- 393 (440)
+++.||+|++||++++..+.. +. ....|.+++|+|++.+|+++.++.+++|++..+..+..+.
T Consensus 213 s~~~dg~i~iwd~~~~~~~~~-------~~--------~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~ 277 (319)
T 3frx_A 213 SAGKDGEIMLWNLAAKKAMYT-------LS--------AQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPE 277 (319)
T ss_dssp EEETTCEEEEEETTTTEEEEE-------EE--------CCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCC
T ss_pred EEeCCCeEEEEECCCCcEEEE-------ec--------CCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCcc
Confidence 999999999999987654321 10 1235889999999999999999999999998876544331
Q ss_pred -----ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 394 -----KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 394 -----~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
..|...+.+++|+|++ ++|++|+.||.|+||++.+.
T Consensus 278 ~~~~~~~~~~~v~~~~~spdg--------~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 278 FAGYSKAAEPHAVSLAWSADG--------QTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CTTCCGGGCCCEEEEEECTTS--------SEEEEEETTSCEEEEEEEEC
T ss_pred ccccccCcCcceeEEEECCCC--------CEEEEeecCceEEEEEEeec
Confidence 3467789999999999 89999999999999998764
No 9
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=8e-44 Score=316.05 Aligned_cols=309 Identities=17% Similarity=0.213 Sum_probs=221.1
Q ss_pred CCCcccCccccccccccCcceeEEEEccCCCEEEEeeC------CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEc
Q 013578 74 DQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACA------DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFA 147 (440)
Q Consensus 74 ~~~~~~~~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~------dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~ 147 (440)
+...+.|..+.....+|...|++++|||||++||+|+. |+.|++|+..++...... ......|...|.+++|+
T Consensus 25 ~~~~~~w~~p~~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~-~~~~~~~~~~V~~~~~s 103 (357)
T 4g56_B 25 SSKGSAWGRPVTAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESL-CTAGVQTEAGVTDVAWV 103 (357)
T ss_dssp ---------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGG-CSEEEECSSCEEEEEEE
T ss_pred CccccccCCCCCCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeE-ecccCCCCCCEEEEEEc
Confidence 34445666677777889999999999999999999997 778999998766433221 22233566889999999
Q ss_pred cCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeC
Q 013578 148 DNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSE 227 (440)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 227 (440)
|++..+ +++.+ ..+.+|+........... .. ...|... ..++.++|+++ +|++++.
T Consensus 104 ~d~~~l-~~s~d---g~v~lWd~~~~~~~~~~~---------~~---~~~h~~~-------V~~v~~spdg~-~l~sgs~ 159 (357)
T 4g56_B 104 SEKGIL-VASDS---GAVELWEILEKESLLVNK---------FA---KYEHDDI-------VKTLSVFSDGT-QAVSGGK 159 (357)
T ss_dssp TTTEEE-EEETT---SCEEEC--------CCCC---------EE---ECCCSSC-------EEEEEECSSSS-EEEEEET
T ss_pred CCCCEE-EEECC---CEEEEeeccccceeEEEe---------ec---cCCCCCC-------EEEEEECCCCC-EEEEEeC
Confidence 998654 55555 467888765432110000 00 0011111 22344588888 8999999
Q ss_pred CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCC-eEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEE
Q 013578 228 GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGR-FLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLC 306 (440)
Q Consensus 228 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 306 (440)
|+.|++||+++++.+..+..|...|.+++|++++. ++++++.||.|++||++.++. .....+..|...+.+++
T Consensus 160 dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~------~~~~~~~~~~~~v~~v~ 233 (357)
T 4g56_B 160 DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP------ATRIDFCASDTIPTSVT 233 (357)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC------BCBCCCTTCCSCEEEEE
T ss_pred CCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce------eeeeeeccccccccchh
Confidence 99999999999999999999999999999999875 789999999999999876541 11223445778899999
Q ss_pred EcCCC-CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC-CEEEEec-CCEEEEEEc
Q 013578 307 FAPNS-EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG-KILAATH-GSTLQWLSV 383 (440)
Q Consensus 307 ~~p~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~-~~~i~i~d~ 383 (440)
|+|++ .+|++|+.|+.|++||++++..+. ...++...|.+++|+|++ ++|++|+ |+.|+|||+
T Consensus 234 ~sp~~~~~la~g~~d~~i~~wd~~~~~~~~--------------~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~ 299 (357)
T 4g56_B 234 WHPEKDDTFACGDETGNVSLVNIKNPDSAQ--------------TSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDA 299 (357)
T ss_dssp ECTTSTTEEEEEESSSCEEEEESSCGGGCE--------------EECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred hhhcccceEEEeecccceeEEECCCCcEeE--------------EEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEEC
Confidence 99974 678999999999999998764321 123456679999999997 5788765 899999999
Q ss_pred CCccchhhhhccccCCeEEEEecC-CCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 384 ETGKVLDTAEKAHEGEITCMAWAP-KTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 384 ~~~~~~~~~~~~h~~~v~~v~~~~-~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
.+++++..+ +|.+.|++++|+| ++ .+|+|||.||+|++|++++.
T Consensus 300 ~~~~~~~~~--~H~~~V~~vafsP~d~--------~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 300 DFSEVFRDL--SHRDFVTGVAWSPLDH--------SKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp TSCEEEEEC--CCSSCEEEEEECSSST--------TEEEEEETTSCEEEEECC--
T ss_pred CCCcEeEEC--CCCCCEEEEEEeCCCC--------CEEEEEcCCCeEEEEECCCC
Confidence 999988765 6999999999998 56 79999999999999999763
No 10
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.1e-43 Score=310.73 Aligned_cols=297 Identities=20% Similarity=0.252 Sum_probs=233.1
Q ss_pred cccccccCcceeEEEEccC-CCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 84 VNTLKGHGDSVTGLCFSSD-GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~d-g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
..+|+||++.|++|+|+|+ +++|||||.||+|+|||+...+...........+|...|.+++|+|+++++++++.+
T Consensus 31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d--- 107 (340)
T 4aow_A 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD--- 107 (340)
T ss_dssp EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT---
T ss_pred EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc---
Confidence 4579999999999999997 689999999999999999887655555566677899999999999999999999887
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce-
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL- 241 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~- 241 (440)
..+.+|+.......... ..+... .....+.+++. ++++++.|+.+++||......
T Consensus 108 ~~i~~~~~~~~~~~~~~----------------~~~~~~-------~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~ 163 (340)
T 4aow_A 108 GTLRLWDLTTGTTTRRF----------------VGHTKD-------VLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKY 163 (340)
T ss_dssp SEEEEEETTTTEEEEEE----------------ECCSSC-------EEEEEECTTSS-CEEEEETTSCEEEECTTSCEEE
T ss_pred ccceEEeecccceeeee----------------cCCCCc-------eeEEEEeecCc-cceeecCCCeEEEEEeCCCceE
Confidence 35555554433211100 000011 11122355666 899999999999999876544
Q ss_pred eeeeeCCCCcccEEEecCCC--CeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC
Q 013578 242 LGNVDTNQLKNNMAAISPNG--RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK 319 (440)
Q Consensus 242 ~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~ 319 (440)
......|...+.+++|++++ .++++++.|+.|++||++... ....+.+|.+.|++++|+|++++|++++.
T Consensus 164 ~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~--------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~ 235 (340)
T 4aow_A 164 TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK--------LKTNHIGHTGYLNTVTVSPDGSLCASGGK 235 (340)
T ss_dssp EECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE--------EEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc--------eeeEecCCCCcEEEEEECCCCCEEEEEeC
Confidence 34456778889999998864 578899999999999986654 67778899999999999999999999999
Q ss_pred CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhh-------
Q 013578 320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTA------- 392 (440)
Q Consensus 320 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~------- 392 (440)
|+.|++||+++...+.. + .+...+..+.|+|++.+++++.|+.|++||++++..+..+
T Consensus 236 Dg~i~iwd~~~~~~~~~-------~--------~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 300 (340)
T 4aow_A 236 DGQAMLWDLNEGKHLYT-------L--------DGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVIST 300 (340)
T ss_dssp TCEEEEEETTTTEEEEE-------E--------ECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC----
T ss_pred CCeEEEEEeccCceeee-------e--------cCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceee
Confidence 99999999987654321 1 1123478999999999999999999999999887654433
Q ss_pred -hccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 393 -EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 393 -~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
..+|...|++++|+|++ ++|++|+.||.|+||++.+|+
T Consensus 301 ~~~~h~~~v~~l~~s~dg--------~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 301 SSKAEPPQCTSLAWSADG--------QTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ---CCCCCEEEEEECTTS--------SEEEEEETTSCEEEEEEEC--
T ss_pred eccCCCCCEEEEEECCCC--------CEEEEEeCCCEEEEEeCCCcC
Confidence 24688999999999998 899999999999999999875
No 11
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1e-42 Score=331.26 Aligned_cols=318 Identities=17% Similarity=0.183 Sum_probs=249.1
Q ss_pred CCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCC
Q 013578 75 QNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNA 150 (440)
Q Consensus 75 ~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~ 150 (440)
...++|.. ....|.+|.+.|++++|+|||++||+|+.||+|+|||+.++... .......|.+.|.+++|+|++
T Consensus 39 ~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~---~~~~~~~~~~~v~~v~fs~dg 115 (611)
T 1nr0_A 39 TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI---LKTTIPVFSGPVKDISWDSES 115 (611)
T ss_dssp TEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC---EEEEEECSSSCEEEEEECTTS
T ss_pred CEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce---eeEeecccCCceEEEEECCCC
Confidence 35555543 46788999999999999999999999999999999999755432 223445678899999999999
Q ss_pred CeEEEEeecCC-cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCc
Q 013578 151 TSIVVATHNLS-GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGT 229 (440)
Q Consensus 151 ~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 229 (440)
+.+++++.+.. ...+++|+....... ...|...+ ..+.++|++...|++++.|+
T Consensus 116 ~~l~~~~~~~~~~~~v~~wd~~~~~~~------------------l~gh~~~v-------~~v~f~p~~~~~l~s~s~D~ 170 (611)
T 1nr0_A 116 KRIAAVGEGRERFGHVFLFDTGTSNGN------------------LTGQARAM-------NSVDFKPSRPFRIISGSDDN 170 (611)
T ss_dssp CEEEEEECCSSCSEEEEETTTCCBCBC------------------CCCCSSCE-------EEEEECSSSSCEEEEEETTS
T ss_pred CEEEEEECCCCceeEEEEeeCCCCcce------------------ecCCCCCc-------eEEEECCCCCeEEEEEeCCC
Confidence 99998876532 246788875432111 11222222 22344788876799999999
Q ss_pred eEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee-------ccccce
Q 013578 230 DISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK-------GHKSAV 302 (440)
Q Consensus 230 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-------~h~~~v 302 (440)
+|++||..+++++..+..|...|.+++|+|+|++|++|+.|+.|++||+..+. ....+. +|.+.|
T Consensus 171 ~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~--------~~~~~~~~~~~~~~h~~~V 242 (611)
T 1nr0_A 171 TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT--------KTGVFEDDSLKNVAHSGSV 242 (611)
T ss_dssp CEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--------EEEECBCTTSSSCSSSSCE
T ss_pred eEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCc--------EeeeeccccccccccCCCE
Confidence 99999999999999999999999999999999999999999999999986544 333442 799999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCcc-------------------------cccc----ccccCCCC
Q 013578 303 TWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTL-------------------------KVLP----IPLLDSNG 353 (440)
Q Consensus 303 ~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------------------------~~~~----~~~~~~~~ 353 (440)
.+++|+|++++|++++.|++|++||++++.++....... ..+. .......+
T Consensus 243 ~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~g 322 (611)
T 1nr0_A 243 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYG 322 (611)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcC
Confidence 999999999999999999999999998766543211000 0000 01112346
Q ss_pred CeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEE
Q 013578 354 ATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432 (440)
Q Consensus 354 ~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw 432 (440)
|...|.+++|+|+|++|++++ |+.|++||+.+++....+..+|...|.+++|++++ .|++++.|+.+++|
T Consensus 323 h~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~---------~l~s~s~d~~v~~w 393 (611)
T 1nr0_A 323 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG---------DLFTVSWDDHLKVV 393 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS---------CEEEEETTTEEEEE
T ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCC---------cEEEEEcCCceEEe
Confidence 778899999999999999876 89999999999988776656799999999999874 78999999999999
Q ss_pred eCCCC
Q 013578 433 LAPSL 437 (440)
Q Consensus 433 ~~~~~ 437 (440)
++...
T Consensus 394 ~~~~~ 398 (611)
T 1nr0_A 394 PAGGS 398 (611)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 98764
No 12
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.2e-42 Score=305.76 Aligned_cols=299 Identities=17% Similarity=0.203 Sum_probs=231.7
Q ss_pred ccccccccccCcceeEEEE-----cc-CCCEEEEeeCCCcEEEEecCCCCCc--ceeeEEecCCCCCCCceEEEccCCCe
Q 013578 81 PLDVNTLKGHGDSVTGLCF-----SS-DGKCLATACADGVIRVHKLDDASSK--SFKFLRINLPPGGPPTAVAFADNATS 152 (440)
Q Consensus 81 ~~~~~~l~~H~~~V~~l~~-----s~-dg~~l~t~s~dg~v~vW~~~~~~~~--~~~~~~~~~~~~~~v~~v~~~~~~~~ 152 (440)
......|+||.+.|++++| ++ |+++|+||+.|++|++||+...... .........+|...|.+++|+|++.+
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence 3456789999999999999 77 9999999999999999999764322 12234556788899999999999999
Q ss_pred EEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEE
Q 013578 153 IVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDIS 232 (440)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 232 (440)
+++++.| ..+.+|+....... .....|... ...+.++|+++ ++++++.|++|+
T Consensus 91 l~s~s~D---~~v~lwd~~~~~~~----------------~~~~~h~~~-------v~~v~~sp~~~-~l~s~~~d~~i~ 143 (343)
T 2xzm_R 91 AISSSWD---KTLRLWDLRTGTTY----------------KRFVGHQSE-------VYSVAFSPDNR-QILSAGAEREIK 143 (343)
T ss_dssp EEEEETT---SEEEEEETTSSCEE----------------EEEECCCSC-------EEEEEECSSTT-EEEEEETTSCEE
T ss_pred EEEEcCC---CcEEEEECCCCcEE----------------EEEcCCCCc-------EEEEEECCCCC-EEEEEcCCCEEE
Confidence 9999887 57777876543110 001112111 22344588888 899999999999
Q ss_pred EEeCCCCceeeeee---CCCCcccEEEecCCC----------CeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccc
Q 013578 233 IWHGKTGKLLGNVD---TNQLKNNMAAISPNG----------RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK 299 (440)
Q Consensus 233 vwd~~~~~~~~~~~---~~~~~v~~~~~s~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~ 299 (440)
+||+.. ....... .|...+.+++|+|++ .+|++++.||.|++||.. . .....+.+|.
T Consensus 144 ~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~--------~~~~~~~~h~ 213 (343)
T 2xzm_R 144 LWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-F--------QIRYTFKAHE 213 (343)
T ss_dssp EEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-T--------EEEEEEECCS
T ss_pred EEeccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-C--------ceeEEEcCcc
Confidence 999984 3333332 677889999999987 789999999999999942 1 2456788999
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEE
Q 013578 300 SAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQ 379 (440)
Q Consensus 300 ~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~ 379 (440)
..|.+++|+|++++|++++.|+.|++||+...... ...+ .+...|.+++|+|++++++++.|+.|+
T Consensus 214 ~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~------~~~~--------~~~~~v~~v~~sp~~~~la~~~d~~v~ 279 (343)
T 2xzm_R 214 SNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP------QREF--------DAGSTINQIAFNPKLQWVAVGTDQGVK 279 (343)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC------SEEE--------ECSSCEEEEEECSSSCEEEEEESSCEE
T ss_pred ccceEEEECCCCCEEEEEcCCCeEEEEECCCCccc------ceee--------cCCCcEEEEEECCCCCEEEEECCCCEE
Confidence 99999999999999999999999999999532211 0100 012348899999999999999999999
Q ss_pred EEEcCCccchh--hhh----------ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 380 WLSVETGKVLD--TAE----------KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 380 i~d~~~~~~~~--~~~----------~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
+|++.+++... .+. .+|...|++++|+|++ .+|++|+.||.|++|++++++
T Consensus 280 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g--------~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 280 IFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALG--------KKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp EEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSS--------CCEEEEETTSEEEEEEEEEEE
T ss_pred EEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCC--------CeEEEecCCceEEEEEEEccC
Confidence 99998876543 221 2688899999999998 899999999999999987654
No 13
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.9e-43 Score=309.01 Aligned_cols=295 Identities=17% Similarity=0.188 Sum_probs=217.1
Q ss_pred ccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCC-----CCC-cceeeEEecCCCCCCCceEEEccCCCeEEEEeecC
Q 013578 87 LKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDD-----ASS-KSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL 160 (440)
Q Consensus 87 l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~-----~~~-~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~ 160 (440)
...|...|.+++|+|||++|++++ |+++|+||... ... ...........+...|.+++|+|++ .+++++.+
T Consensus 26 ~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~d- 102 (344)
T 4gqb_B 26 PACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDS- 102 (344)
T ss_dssp CSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETT-
T ss_pred cccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECC-
Confidence 345778899999999999999888 77888887321 000 0000111112244679999999985 67777766
Q ss_pred CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc
Q 013578 161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK 240 (440)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 240 (440)
..+++|+.......... -.....|... ..++.++|+++ +|++|+.|++|++||+.+++
T Consensus 103 --g~v~lWd~~~~~~~~~~------------~~~~~~H~~~-------V~~v~~spdg~-~l~sgs~d~~i~iwd~~~~~ 160 (344)
T 4gqb_B 103 --GAVELWELDENETLIVS------------KFCKYEHDDI-------VSTVSVLSSGT-QAVSGSKDICIKVWDLAQQV 160 (344)
T ss_dssp --SEEEEEEECTTSSCEEE------------EEEEECCSSC-------EEEEEECTTSS-EEEEEETTSCEEEEETTTTE
T ss_pred --CEEEEEeccCCCceeEe------------eccccCCCCC-------EEEEEECCCCC-EEEEEeCCCeEEEEECCCCc
Confidence 46777776543110000 0000112211 22344588888 99999999999999999999
Q ss_pred eeeeeeCCCCcccEEEecCCCC-eEEEEecCCCEEEEEeEecCCCceeeeeeeeee--eccccceEEEEEcCC-CCEEEE
Q 013578 241 LLGNVDTNQLKNNMAAISPNGR-FLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL--KGHKSAVTWLCFAPN-SEQIIT 316 (440)
Q Consensus 241 ~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~-~~~l~s 316 (440)
++..+.+|...|.+++|++++. +|++++.|+.|++||++.++ ....+ ..|...+.+++|+|+ +.+|++
T Consensus 161 ~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~--------~~~~~~~~~~~~~~~~~~~~p~~~~~l~s 232 (344)
T 4gqb_B 161 VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK--------PASQIGCSAPGYLPTSLAWHPQQSEVFVF 232 (344)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS--------CEEECC----CCCEEEEEECSSCTTEEEE
T ss_pred EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccc--------eeeeeecceeeccceeeeecCCCCcceEE
Confidence 9999999999999999999885 78999999999999997665 33333 345667999999995 568899
Q ss_pred EeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC-CEEEEec-CCEEEEEEcCCccchhhhhc
Q 013578 317 ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG-KILAATH-GSTLQWLSVETGKVLDTAEK 394 (440)
Q Consensus 317 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~-~~~i~i~d~~~~~~~~~~~~ 394 (440)
|+.||+|++||+++++++. ...+|...|.+++|+|++ ++|++|+ |+.|++||+.+++++. + .
T Consensus 233 g~~dg~v~~wd~~~~~~~~--------------~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~-~ 296 (344)
T 4gqb_B 233 GDENGTVSLVDTKSTSCVL--------------SSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-S-Q 296 (344)
T ss_dssp EETTSEEEEEESCC--CCE--------------EEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-E-C
T ss_pred eccCCcEEEEECCCCcEEE--------------EEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-E-c
Confidence 9999999999998764321 223566779999999998 5788765 8999999999998764 3 5
Q ss_pred cccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 395 AHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 395 ~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
+|.+.|++++|+|++. .+|+|||.||+|++|++++.
T Consensus 297 ~H~~~V~~v~~sp~~~-------~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 297 AHRDFVRDATWSPLNH-------SLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp CCSSCEEEEEECSSST-------TEEEEEETTSCEEEEECCC-
T ss_pred CCCCCEEEEEEeCCCC-------eEEEEEcCCCeEEEEECCCC
Confidence 8999999999999871 46889999999999999764
No 14
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-42 Score=300.43 Aligned_cols=310 Identities=17% Similarity=0.247 Sum_probs=225.0
Q ss_pred ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEec-CC-CCCCCceEEEccCCCeEEEEeecC
Q 013578 83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRIN-LP-PGGPPTAVAFADNATSIVVATHNL 160 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~-~~-~~~~v~~v~~~~~~~~l~~~~~~~ 160 (440)
.+++|.+|.+.|++++|+|+ +||+|+.|++|++|++..+... ..... .. |...|.+++|+|++++|++++.|
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~---~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D- 79 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFT---LIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD- 79 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCE---EEEEECTTCCCSCEEEEEECTTSSEEEEEETT-
T ss_pred cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeE---EEEEEecCCccCCEEEEEECCCCCEEEEEeCC-
Confidence 46789999999999999987 9999999999999999865322 22222 33 88899999999999999999987
Q ss_pred CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC--
Q 013578 161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT-- 238 (440)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~-- 238 (440)
..+.+|+........ ...........|... ...+.++|+++ +|++|+.|++|++||+..
T Consensus 80 --~~v~iw~~~~~~~~~---------~~~~~~~~~~~h~~~-------V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~ 140 (330)
T 2hes_X 80 --STVSIWAKEESADRT---------FEMDLLAIIEGHENE-------VKGVAWSNDGY-YLATCSRDKSVWIWETDESG 140 (330)
T ss_dssp --SCEEEEEC----------------CCCEEEEEEC----C-------EEEEEECTTSC-EEEEEETTSCEEEEECCTTC
T ss_pred --CcEEEEEcccCcCcc---------ccceeEEEEcCCCCc-------EEEEEECCCCC-EEEEEeCCCEEEEEeccCCC
Confidence 466777653211000 000000011112221 23345588888 999999999999999943
Q ss_pred --CceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCC--CCEE
Q 013578 239 --GKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPN--SEQI 314 (440)
Q Consensus 239 --~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~--~~~l 314 (440)
.+++..+..|...|.+++|+|++++|++|+.|+.|++||+.... ..++..+.+|.+.|.+++|+|+ +.+|
T Consensus 141 ~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~~l 214 (330)
T 2hes_X 141 EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD------WECVAVLNGHEGTVWSSDFDKTEGVFRL 214 (330)
T ss_dssp CCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE------EEEEEEECCCSSCEEEEEECCSSSSCEE
T ss_pred CCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC------eeEEEEccCCCCcEEEEEecCCCCeeEE
Confidence 24567788899999999999999999999999999999986431 2356788899999999999998 6789
Q ss_pred EEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCcc--chhhh
Q 013578 315 ITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGK--VLDTA 392 (440)
Q Consensus 315 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~--~~~~~ 392 (440)
++++.|++|++||++....... ............|...|.+++|++++.+++++.|+.|++|+..+++ .....
T Consensus 215 ~s~s~D~~v~iw~~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~ 289 (330)
T 2hes_X 215 CSGSDDSTVRVWKYMGDDEDDQ-----QEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKR 289 (330)
T ss_dssp EEEETTSCEEEEEEEEECTTSC-----EEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred EEEeCCCeEEEEEecCCCcccc-----ceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEecc
Confidence 9999999999999975422100 0000001111235667999999988755555679999999998874 33333
Q ss_pred hccccC-CeEEEEecC--CCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 393 EKAHEG-EITCMAWAP--KTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 393 ~~~h~~-~v~~v~~~~--~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
..+|.. .|++++|+| ++ .+|++|+.||+|++|+++.
T Consensus 290 ~~~h~~~~v~~v~~~~~~~~--------~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 290 ALCHGVYEINVVKWLELNGK--------TILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp SCTTTTSCEEEEEEC-------------CCEEEEETTSEEEEEEC--
T ss_pred ccccccceEEEEEEecCCCc--------eEEEEecCCCcEEEEEecc
Confidence 246877 899999999 55 7999999999999999875
No 15
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.8e-41 Score=294.21 Aligned_cols=294 Identities=20% Similarity=0.327 Sum_probs=232.5
Q ss_pred cccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578 82 LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS 161 (440)
Q Consensus 82 ~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~ 161 (440)
....++.+|.+.|++++|+|+|++|++|+.||.|++|++.++. .......|...|.+++|+|+++++++++.+
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-- 86 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSDSNLLVSASDD-- 86 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEETT--
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-----cchhhccCCCceEEEEEcCCCCEEEEECCC--
Confidence 3466789999999999999999999999999999999998764 344556788999999999999999999887
Q ss_pred cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578 162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL 241 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 241 (440)
..+.+|+........ ....+... ...+.++|++. ++++++.|+.|++||+++++.
T Consensus 87 -~~i~vwd~~~~~~~~----------------~~~~~~~~-------v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~ 141 (312)
T 4ery_A 87 -KTLKIWDVSSGKCLK----------------TLKGHSNY-------VFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKC 141 (312)
T ss_dssp -SEEEEEETTTCCEEE----------------EEECCSSC-------EEEEEECSSSS-EEEEEETTSCEEEEETTTCCE
T ss_pred -CEEEEEECCCCcEEE----------------EEcCCCCC-------EEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEE
Confidence 567777765431110 00111111 12233477777 899999999999999999999
Q ss_pred eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee-eccccceEEEEEcCCCCEEEEEeCC
Q 013578 242 LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL-KGHKSAVTWLCFAPNSEQIITASKD 320 (440)
Q Consensus 242 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~~~d 320 (440)
+..+..|...+.+++|+|++++|++++.||.|++||++.++ .+..+ ..+...+.+++|+|++++|++++.|
T Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 213 (312)
T 4ery_A 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--------CLKTLIDDDNPPVSFVKFSPNGKYILAATLD 213 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--------EEEEECCSSCCCEEEEEECTTSSEEEEEETT
T ss_pred EEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--------eeeEEeccCCCceEEEEECCCCCEEEEEcCC
Confidence 99999999999999999999999999999999999986554 33333 3466789999999999999999999
Q ss_pred CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCC
Q 013578 321 GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGE 399 (440)
Q Consensus 321 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~ 399 (440)
+.|++||++++..+.... ........+......+++.+|++|+ |+.|++||+.+++.+..+ .+|.+.
T Consensus 214 ~~i~iwd~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~ 281 (312)
T 4ery_A 214 NTLKLWDYSKGKCLKTYT-----------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL-QGHTDV 281 (312)
T ss_dssp TEEEEEETTTTEEEEEEC-----------SSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE-CCCSSC
T ss_pred CeEEEEECCCCcEEEEEE-----------ecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh-hccCCc
Confidence 999999998765432110 0011111122233346788888876 899999999999999888 589999
Q ss_pred eEEEEecCCCCCCCCCcceEEEEee--CCCeEEEEeCC
Q 013578 400 ITCMAWAPKTIPMGNQQVSVLATSS--VDKKVKLWLAP 435 (440)
Q Consensus 400 v~~v~~~~~~~~~~~~~~~~l~t~~--~Dg~i~vw~~~ 435 (440)
|.+++|+|++ .+|++++ .|++|++|+.+
T Consensus 282 v~~~~~~p~~--------~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 282 VISTACHPTE--------NIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEEEECSSS--------SEEEEEECTTTCCEEEEECC
T ss_pred EEEEeecCcC--------CceEEEEccCCccEEEecCC
Confidence 9999999998 8999987 69999999975
No 16
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.6e-41 Score=322.97 Aligned_cols=331 Identities=16% Similarity=0.180 Sum_probs=242.6
Q ss_pred CCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEec-------CC
Q 013578 68 HSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRIN-------LP 136 (440)
Q Consensus 68 ~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~-------~~ 136 (440)
.++++.|+..++|.. .+.++.+|.+.|++++|+|||++||+|+.|++|++||+.++... ... ..
T Consensus 163 l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~-----~~~~~~~~~~~~ 237 (611)
T 1nr0_A 163 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT-----GVFEDDSLKNVA 237 (611)
T ss_dssp EEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-----EECBCTTSSSCS
T ss_pred EEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEe-----eeeccccccccc
Confidence 566777888888864 35678999999999999999999999999999999999876521 222 16
Q ss_pred CCCCCceEEEccCCCeEEEEeecCCcceEEeecccccccccccccc-------------------CCCCCCceeeccccc
Q 013578 137 PGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQ-------------------SKLPGPEIKWEHHKV 197 (440)
Q Consensus 137 ~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~ 197 (440)
|.+.|.+++|+|++++|++++.| ..+.+|+............. .........|+....
T Consensus 238 h~~~V~~v~~spdg~~l~s~s~D---~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~ 314 (611)
T 1nr0_A 238 HSGSVFGLTWSPDGTKIASASAD---KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELG 314 (611)
T ss_dssp SSSCEEEEEECTTSSEEEEEETT---SEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTT
T ss_pred cCCCEEEEEECCCCCEEEEEeCC---CeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCC
Confidence 88999999999999999999987 57778876543221111000 001112233433222
Q ss_pred ccceeEEEe-ecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeee-eC----------------------------
Q 013578 198 HDKRAILTL-FGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNV-DT---------------------------- 247 (440)
Q Consensus 198 ~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~---------------------------- 247 (440)
........+ .....+.++|+++ +|++++.|++|++||+.+++....+ ..
T Consensus 315 ~~~~~~~gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w 393 (611)
T 1nr0_A 315 SIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVV 393 (611)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEE
T ss_pred CcceEEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEe
Confidence 111111111 1223455688888 8999999999999998876543221 00
Q ss_pred -----------------------------------------------------CCCcccEEEecCCCCeEEEEecCCCEE
Q 013578 248 -----------------------------------------------------NQLKNNMAAISPNGRFLAAAAFTADVK 274 (440)
Q Consensus 248 -----------------------------------------------------~~~~v~~~~~s~~~~~l~~~~~dg~i~ 274 (440)
+...+.+++|+|+|++|++|+.|++|+
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~ 473 (611)
T 1nr0_A 394 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVH 473 (611)
T ss_dssp CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred ecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEE
Confidence 123356889999999999999999999
Q ss_pred EEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCc-cccccCCCCccccccccccCCCC
Q 013578 275 VWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINV-RYHLDEDPKTLKVLPIPLLDSNG 353 (440)
Q Consensus 275 i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~ 353 (440)
+||+.... ...... .+|...|++++|+|+|++|++++.|++|++||+.+ ..... .....+
T Consensus 474 lwd~~~~~------~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~------------~~~~~~ 534 (611)
T 1nr0_A 474 VYKLSGAS------VSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH------------TNSWTF 534 (611)
T ss_dssp EEEEETTE------EEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC------------CCCCCC
T ss_pred EEEccCCc------eeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceee------------eeeeee
Confidence 99986432 112233 67999999999999999999999999999999986 22210 001123
Q ss_pred CeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchh-hhhccc-cCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEE
Q 013578 354 ATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLD-TAEKAH-EGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVK 430 (440)
Q Consensus 354 ~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~-~~~~~h-~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~ 430 (440)
|...|.+++|+|||++|++|+ |+.|++||+.+++... ....+| .+.|++++|+|++ . |++++.|++|+
T Consensus 535 H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~--------~-l~s~~~D~~i~ 605 (611)
T 1nr0_A 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET--------T-IVSAGQDSNIK 605 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETT--------E-EEEEETTSCEE
T ss_pred cccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCC--------E-EEEecCCCCEE
Confidence 677899999999999999876 9999999999876332 233589 8999999999997 6 99999999999
Q ss_pred EEeCC
Q 013578 431 LWLAP 435 (440)
Q Consensus 431 vw~~~ 435 (440)
+|+++
T Consensus 606 lW~~~ 610 (611)
T 1nr0_A 606 FWNVP 610 (611)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99984
No 17
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.8e-41 Score=302.68 Aligned_cols=308 Identities=19% Similarity=0.265 Sum_probs=224.0
Q ss_pred cccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEec---------------CCCCCCCceEEEccCCCe
Q 013578 88 KGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRIN---------------LPPGGPPTAVAFADNATS 152 (440)
Q Consensus 88 ~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~---------------~~~~~~v~~v~~~~~~~~ 152 (440)
.+|.+.|.+++|+|||++||+|+ |++++||++.++.... .+... ..+...|.+++|+|++++
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~ 137 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA--RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF 137 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE--EECC-----------------CCCCBEEEEEECTTSSE
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE--EecCccccccccccccccccCCCceeEEEEEECCCCCE
Confidence 37999999999999999999987 6899999998765321 11000 011224889999999999
Q ss_pred EEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEE
Q 013578 153 IVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDIS 232 (440)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 232 (440)
+++++.+ ..+.+|+....... .....|...+ ..+.++|++. +|++++.|++|+
T Consensus 138 l~s~~~d---~~i~iwd~~~~~~~----------------~~~~~h~~~v-------~~~~~~p~~~-~l~s~s~d~~v~ 190 (393)
T 1erj_A 138 LATGAED---RLIRIWDIENRKIV----------------MILQGHEQDI-------YSLDYFPSGD-KLVSGSGDRTVR 190 (393)
T ss_dssp EEEEETT---SCEEEEETTTTEEE----------------EEECCCSSCE-------EEEEECTTSS-EEEEEETTSEEE
T ss_pred EEEEcCC---CeEEEEECCCCcEE----------------EEEccCCCCE-------EEEEEcCCCC-EEEEecCCCcEE
Confidence 9999887 56777775543110 0011122211 2334578888 899999999999
Q ss_pred EEeCCCCceeeeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee-------eeccccceEE
Q 013578 233 IWHGKTGKLLGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ-------LKGHKSAVTW 304 (440)
Q Consensus 233 vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-------~~~h~~~v~~ 304 (440)
+||+++++....+.. ...+.+++|+| ++++|++|+.|+.|++||++.+. .+.. ..+|...|.+
T Consensus 191 iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~--------~~~~~~~~~~~~~~h~~~v~~ 261 (393)
T 1erj_A 191 IWDLRTGQCSLTLSI-EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF--------LVERLDSENESGTGHKDSVYS 261 (393)
T ss_dssp EEETTTTEEEEEEEC-SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC--------EEEEEC------CCCSSCEEE
T ss_pred EEECCCCeeEEEEEc-CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc--------EEEeecccccCCCCCCCCEEE
Confidence 999999988877764 45789999999 89999999999999999986543 2222 2579999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEc
Q 013578 305 LCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSV 383 (440)
Q Consensus 305 ~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~ 383 (440)
++|+|++++|++++.|++|++||+++........... .........+|...|.+++|+|++++|++|+ |+.|++||.
T Consensus 262 v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~ 339 (393)
T 1erj_A 262 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN--SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 339 (393)
T ss_dssp EEECTTSSEEEEEETTSEEEEEEC-----------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC--CCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 9999999999999999999999998654321110000 0001112235666789999999999999876 899999999
Q ss_pred CCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 384 ETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 384 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
.+++.+..+ .+|.+.|.+++|+++.... .++.+|+||+.||+|+||++...++
T Consensus 340 ~~~~~~~~l-~~h~~~v~~v~~~~~~~~~--p~~~~l~sgs~Dg~i~iW~~~~~~p 392 (393)
T 1erj_A 340 KSGNPLLML-QGHRNSVISVAVANGSSLG--PEYNVFATGSGDCKARIWKYKKIAP 392 (393)
T ss_dssp TTCCEEEEE-ECCSSCEEEEEECSSCTTC--TTCEEEEEEETTSEEEEEEEEEC--
T ss_pred CCCeEEEEE-CCCCCCEEEEEecCCcCcC--CCCCEEEEECCCCcEEECcccccCC
Confidence 999998888 5999999999998731000 0117999999999999999977654
No 18
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=9.1e-41 Score=317.13 Aligned_cols=296 Identities=26% Similarity=0.424 Sum_probs=239.1
Q ss_pred CCCCCCCCcccCcc---ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEE
Q 013578 69 SHGDKDQNKRHHPL---DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA 145 (440)
Q Consensus 69 ~~~~~~~~~~~~~~---~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~ 145 (440)
.++..++..+.|.. .+..+.+|.+.|++++|+|++++|++++.||+|++||+.... ......|...+.+++
T Consensus 278 ~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~------~~~~~~~~~~v~~~~ 351 (577)
T 2ymu_A 278 ASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH------LQTLTGHSSSVWGVA 351 (577)
T ss_dssp EEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE------EEEECCCSSCEEEEE
T ss_pred EEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe------eEEEeCCCCCEEEEE
Confidence 34455666666643 466788999999999999999999999999999999986542 344567788999999
Q ss_pred EccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEe
Q 013578 146 FADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASC 225 (440)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 225 (440)
|+|+++++++++.+ ..+.+|+..... ......+... ...+.++|+++ +|+++
T Consensus 352 ~s~~g~~l~~~~~d---g~v~~~~~~~~~-----------------~~~~~~~~~~-------v~~~~~s~dg~-~l~~~ 403 (577)
T 2ymu_A 352 FSPDGQTIASASDD---KTVKLWNRNGQL-----------------LQTLTGHSSS-------VRGVAFSPDGQ-TIASA 403 (577)
T ss_dssp ECTTSSEEEEEETT---SEEEEEETTCCE-----------------EEEEECCSSC-------EEEEEECTTSS-CEEEE
T ss_pred ECCCCCEEEEEeCC---CEEEEEcCCCCE-----------------EEEecCCCCC-------eEEEEECCCCC-EEEEE
Confidence 99999999999876 456666532211 0001111111 12334578888 89999
Q ss_pred eCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEE
Q 013578 226 SEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWL 305 (440)
Q Consensus 226 ~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 305 (440)
+.|+.|++||. +++.+..+..|...+.+++|+|++++|++++.|+.|++||... + .+..+.+|...|.++
T Consensus 404 ~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~--------~~~~~~~~~~~v~~~ 473 (577)
T 2ymu_A 404 SDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-Q--------LLQTLTGHSSSVRGV 473 (577)
T ss_dssp ETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-C--------EEEEEECCSSCEEEE
T ss_pred eCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-C--------EEEEEcCCCCCEEEE
Confidence 99999999995 5788888999999999999999999999999999999999532 1 566788999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcC
Q 013578 306 CFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVE 384 (440)
Q Consensus 306 ~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~ 384 (440)
+|+|++++|++++.|+.|++||... ..+ ....+|...|++++|+|+|++|++++ |+.|++||.
T Consensus 474 ~~spd~~~las~~~d~~i~iw~~~~-~~~--------------~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~- 537 (577)
T 2ymu_A 474 AFSPDGQTIASASDDKTVKLWNRNG-QLL--------------QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR- 537 (577)
T ss_dssp EECTTSCEEEEEETTSEEEEEETTS-CEE--------------EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-
T ss_pred EEcCCCCEEEEEeCCCEEEEEcCCC-CEE--------------EEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-
Confidence 9999999999999999999999642 211 11235667799999999999999865 899999995
Q ss_pred CccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578 385 TGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL 433 (440)
Q Consensus 385 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~ 433 (440)
+++++..+ .+|.+.|++++|+||+ ++|+|++.|++|++||
T Consensus 538 ~~~~~~~~-~~h~~~v~~~~fs~dg--------~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 538 NGQLLQTL-TGHSSSVWGVAFSPDG--------QTIASASSDKTVKLWN 577 (577)
T ss_dssp TSCEEEEE-ECCSSCEEEEEECTTS--------SCEEEEETTSCEEEEC
T ss_pred CCCEEEEE-cCCCCCEEEEEEcCCC--------CEEEEEeCCCEEEEeC
Confidence 67888777 5999999999999998 8999999999999997
No 19
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.4e-40 Score=284.80 Aligned_cols=258 Identities=22% Similarity=0.303 Sum_probs=206.8
Q ss_pred cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC 163 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~ 163 (440)
+..+.+|.+.|++++|+|+|++||||+.|++|+||++...... ......+|.++|.+++|+++.
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~---~~~~l~gH~~~V~~v~~s~~~------------- 65 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK---LIDTLTGHEGPVWRVDWAHPK------------- 65 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC---CCEEECCCSSCEEEEEECCGG-------------
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE---EEEEEccccCCeEEEEecCCC-------------
Confidence 3467899999999999999999999999999999999754322 334556888999999997531
Q ss_pred eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc--e
Q 013578 164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK--L 241 (440)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~ 241 (440)
++. +|++|+.|++|++||+++++ .
T Consensus 66 -----------------------------------------------------~g~-~l~s~s~D~~v~iWd~~~~~~~~ 91 (297)
T 2pm7_B 66 -----------------------------------------------------FGT-ILASCSYDGKVMIWKEENGRWSQ 91 (297)
T ss_dssp -----------------------------------------------------GCS-EEEEEETTTEEEEEEBSSSCBCC
T ss_pred -----------------------------------------------------cCC-EEEEEcCCCEEEEEEcCCCceEE
Confidence 112 78999999999999998874 5
Q ss_pred eeeeeCCCCcccEEEecCC--CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCC---------
Q 013578 242 LGNVDTNQLKNNMAAISPN--GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPN--------- 310 (440)
Q Consensus 242 ~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~--------- 310 (440)
+..+..|...|.+++|+|+ +.+|++++.|+.|++||++.... .....+.+|...|.+++|+|+
T Consensus 92 ~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~------~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~ 165 (297)
T 2pm7_B 92 IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT------TSPIIIDAHAIGVNSASWAPATIEEDGEHN 165 (297)
T ss_dssp CEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC------BCCEEEECCSSCEEEEEECCCC--------
T ss_pred EEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc------eeeeeeecccCccceEeecCCcccccccCC
Confidence 5667788899999999997 89999999999999999975431 013457789999999999997
Q ss_pred ----CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC---CEEEEec-CCEEEEEE
Q 013578 311 ----SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG---KILAATH-GSTLQWLS 382 (440)
Q Consensus 311 ----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---~~l~~~~-~~~i~i~d 382 (440)
+++|++++.|++|++||+++..... . ......+|...|.+++|+|++ .+|++++ |+.|++||
T Consensus 166 ~~~~~~~l~sgs~D~~v~lwd~~~~~~~~------~----~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 166 GTKESRKFVTGGADNLVKIWKYNSDAQTY------V----LESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp ----CCEEEEEETTSCEEEEEEETTTTEE------E----EEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred CCCCcceEEEEcCCCcEEEEEEcCCCceE------E----EEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence 5789999999999999997543100 0 012234677789999999995 7888865 99999999
Q ss_pred cCCccc--h-hhh-hccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 383 VETGKV--L-DTA-EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 383 ~~~~~~--~-~~~-~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
+.++.. . ..+ ...|...|.+++|+|++ .+|++++.||+|++|+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--------~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSG--------NVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSS--------CCEEEEETTSCEEEEEEC
T ss_pred eCCCCCccceeeeecccCCCcEEEEEECCCC--------CEEEEEcCCCcEEEEEEC
Confidence 987531 1 111 13688899999999998 899999999999999976
No 20
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.4e-39 Score=314.79 Aligned_cols=294 Identities=19% Similarity=0.240 Sum_probs=230.4
Q ss_pred ccccccCcceeEEEEccCC-CEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578 85 NTLKGHGDSVTGLCFSSDG-KCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC 163 (440)
Q Consensus 85 ~~l~~H~~~V~~l~~s~dg-~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~ 163 (440)
..+++|++.|++++|+|++ ++|+||+.||+|++|++...............+|...|.+++|+|++++|++++.+ .
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D---g 452 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD---G 452 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT---S
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC---C
Confidence 4688999999999999864 79999999999999999875443333445567888999999999999999999987 5
Q ss_pred eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee
Q 013578 164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG 243 (440)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 243 (440)
.+++|+........ ....|... ...+.++++++ ++++++.|++|++||........
T Consensus 453 ~v~vwd~~~~~~~~----------------~~~~h~~~-------v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~~~~~ 508 (694)
T 3dm0_A 453 ELRLWDLAAGVSTR----------------RFVGHTKD-------VLSVAFSLDNR-QIVSASRDRTIKLWNTLGECKYT 508 (694)
T ss_dssp EEEEEETTTTEEEE----------------EEECCSSC-------EEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEE
T ss_pred cEEEEECCCCccee----------------EEeCCCCC-------EEEEEEeCCCC-EEEEEeCCCEEEEEECCCCccee
Confidence 77788765432110 01112222 22334578888 89999999999999986543322
Q ss_pred ee---eCCCCcccEEEecCCC--CeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe
Q 013578 244 NV---DTNQLKNNMAAISPNG--RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS 318 (440)
Q Consensus 244 ~~---~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~ 318 (440)
.. ..|...|.+++|+|++ ..|++++.|+.|++||++..+ ....+.+|.+.|++++|+|++++|++++
T Consensus 509 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~--------~~~~~~~h~~~v~~v~~spdg~~l~sg~ 580 (694)
T 3dm0_A 509 ISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK--------LRSTLAGHTGYVSTVAVSPDGSLCASGG 580 (694)
T ss_dssp ECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC--------EEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred eccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc--------EEEEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence 22 3577789999999987 589999999999999986554 6677889999999999999999999999
Q ss_pred CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhc----
Q 013578 319 KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEK---- 394 (440)
Q Consensus 319 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~---- 394 (440)
.||+|++||++++..+... .+...+.+++|+|++.+|+++.++.|++||+.+++.+..+..
T Consensus 581 ~Dg~i~iwd~~~~~~~~~~---------------~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~ 645 (694)
T 3dm0_A 581 KDGVVLLWDLAEGKKLYSL---------------EANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKA 645 (694)
T ss_dssp TTSBCEEEETTTTEEEECC---------------BCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC-
T ss_pred CCCeEEEEECCCCceEEEe---------------cCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhcccccc
Confidence 9999999999876543211 112348899999999999999999999999999887655421
Q ss_pred --------------cccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 395 --------------AHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 395 --------------~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
.+...+++++|+|++ .+|++|+.||+|+||++..
T Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~l~~spdg--------~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 646 EAEKADNSGPAATKRKVIYCTSLNWSADG--------STLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp ---------------CCCCEEEEEECTTS--------SEEEEEETTSEEEEEEC--
T ss_pred ccccccccccccCCceeEEeeeEEEcCCC--------CEEEEEcCCCeEEEEeccC
Confidence 111237899999999 8999999999999999864
No 21
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.8e-40 Score=301.96 Aligned_cols=304 Identities=14% Similarity=0.198 Sum_probs=220.7
Q ss_pred ccccccCcceeEEEEcc-CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEcc-CCCeEEEEeecCCc
Q 013578 85 NTLKGHGDSVTGLCFSS-DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFAD-NATSIVVATHNLSG 162 (440)
Q Consensus 85 ~~l~~H~~~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~~~~~ 162 (440)
....+|...|+||+|+| ++++||+|+.||+|+|||+...... ......+|.+.|.+|+|+| ++.+|++++.|
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~---~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D--- 186 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP---TFIKGIGAGGSITGLKFNPLNTNQFYASSME--- 186 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC---EEECCCSSSCCCCEEEECSSCTTEEEEECSS---
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce---eEEEccCCCCCEEEEEEeCCCCCEEEEEeCC---
Confidence 34567999999999999 5779999999999999999876543 3344567889999999998 67899999887
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL 242 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 242 (440)
..+.+|+........... .... ......+.+++++. +|++|+.|+.|++||++ ++.+
T Consensus 187 ~~v~iwd~~~~~~~~~~~--------------~~~~-------~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~-~~~~ 243 (435)
T 4e54_B 187 GTTRLQDFKGNILRVFAS--------------SDTI-------NIWFCSLDVSASSR-MVVTGDNVGNVILLNMD-GKEL 243 (435)
T ss_dssp SCEEEEETTSCEEEEEEC--------------CSSC-------SCCCCCEEEETTTT-EEEEECSSSBEEEEESS-SCBC
T ss_pred CEEEEeeccCCceeEEec--------------cCCC-------CccEEEEEECCCCC-EEEEEeCCCcEeeeccC-ccee
Confidence 467777654321100000 0000 00112234467887 99999999999999986 5667
Q ss_pred eeeeCCCCcccEEEecCCCC-eEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC
Q 013578 243 GNVDTNQLKNNMAAISPNGR-FLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG 321 (440)
Q Consensus 243 ~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg 321 (440)
..+..|...|.+++|+|++. +|++|+.|+.|++||++..... .......+|...|++++|+|+|.+|++++.||
T Consensus 244 ~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~-----~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~ 318 (435)
T 4e54_B 244 WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK-----ASFLYSLPHRHPVNAACFSPDGARLLTTDQKS 318 (435)
T ss_dssp CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSS-----SCCSBCCBCSSCEEECCBCTTSSEEEEEESSS
T ss_pred EEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccccc-----ceEEEeeeccccccceeECCCCCeeEEEcCCC
Confidence 78889999999999999876 6889999999999998755421 12334567999999999999999999999999
Q ss_pred cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-------------CCEEEEEEcCCccc
Q 013578 322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-------------GSTLQWLSVETGKV 388 (440)
Q Consensus 322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-------------~~~i~i~d~~~~~~ 388 (440)
.|++||++++.......... ........+..+.|+|++.+++++. ++.|++||..+++.
T Consensus 319 ~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~ 390 (435)
T 4e54_B 319 EIRVYSASQWDCPLGLIPHP--------HRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM 390 (435)
T ss_dssp CEEEEESSSSSSEEEECCCC--------CCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE
T ss_pred EEEEEECCCCccceEEeccc--------ccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE
Confidence 99999998765432111000 0000111122345555555554431 35799999999999
Q ss_pred hhhhhccccCCeEEE-EecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 389 LDTAEKAHEGEITCM-AWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 389 ~~~~~~~h~~~v~~v-~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
+..+..+|...|.++ +|+|++ .+|++|+ |++|+||+++.+++
T Consensus 391 ~~~l~~~~~~~v~s~~~fspdg--------~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 391 MCQLYDPESSGISSLNEFNPMG--------DTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp EEEECCSSCCCCCCEEEECTTS--------SCEEEEC-SSEEEECCCC----
T ss_pred EEEEeCCCCCcEEEEEEECCCC--------CEEEEEc-CCcEEEEECCcCee
Confidence 888766888999988 699998 7888876 88999999999876
No 22
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.8e-41 Score=306.11 Aligned_cols=323 Identities=14% Similarity=0.156 Sum_probs=229.9
Q ss_pred ccccccc-cccCcceeEEEEcc-CCCEEEEeeCCCcEEEEecCC---CCCcceeeEEecCCCCCCCceEEEccCCCeEEE
Q 013578 81 PLDVNTL-KGHGDSVTGLCFSS-DGKCLATACADGVIRVHKLDD---ASSKSFKFLRINLPPGGPPTAVAFADNATSIVV 155 (440)
Q Consensus 81 ~~~~~~l-~~H~~~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~---~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~ 155 (440)
...+..+ ++|.+.|++++|+| ++++|++|+.||+|+|||+.+ +... .. .....|...|.+++|+|+++.+++
T Consensus 52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~--~~-~~~~~h~~~v~~~~~~~~~~~l~s 128 (437)
T 3gre_A 52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVY--SS-SLTYDCSSTVTQITMIPNFDAFAV 128 (437)
T ss_dssp CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCC--SC-SEEEECSSCEEEEEECTTSSEEEE
T ss_pred ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccc--ce-eeeccCCCCEEEEEEeCCCCEEEE
Confidence 3456777 89999999999999 999999999999999999876 3211 11 112247799999999999999999
Q ss_pred EeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEe
Q 013578 156 ATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWH 235 (440)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd 235 (440)
++.+ ..+.+|+......................+.... +........ ...++++. ++++++.|+.|++||
T Consensus 129 ~s~d---g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~-----~~~~~~~~-~l~~~~~d~~i~iwd 198 (437)
T 3gre_A 129 SSKD---GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFG-KNEYAVRMR-----AFVNEEKS-LLVALTNLSRVIIFD 198 (437)
T ss_dssp EETT---SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGS-SCCCEEEEE-----EEECSSCE-EEEEEETTSEEEEEE
T ss_pred EeCC---CEEEEEEeccccCCceeeccccceeEEEEccCcc-cccCceEEE-----EEEcCCCC-EEEEEeCCCeEEEEe
Confidence 9987 4677776532100000000000000000000000 000011000 11245565 999999999999999
Q ss_pred CCCCceeeeeeC--CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee-ccccceEEEEEc----
Q 013578 236 GKTGKLLGNVDT--NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK-GHKSAVTWLCFA---- 308 (440)
Q Consensus 236 ~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~---- 308 (440)
+++++.+..+.. |...|.+++|+|++++|++|+.||.|++||++.+. .+..+. .|...|.+++|+
T Consensus 199 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~v~~~~~~~~~s 270 (437)
T 3gre_A 199 IRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNV--------LIRSWSFGDHAPITHVEVCQFYG 270 (437)
T ss_dssp TTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTE--------EEEEEBCTTCEEEEEEEECTTTC
T ss_pred CCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCcc--------EEEEEecCCCCceEEEEeccccC
Confidence 999999999987 78899999999999999999999999999997643 555554 688899999665
Q ss_pred CCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccc------------cCCCCCeeeeeeEEeCCCCCEEEEec-C
Q 013578 309 PNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPL------------LDSNGATLQYDRLSLSSDGKILAATH-G 375 (440)
Q Consensus 309 p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~v~~~~~s~~g~~l~~~~-~ 375 (440)
|++.+|++++.||.|++||++++.++.............. .....+...|.+++|+ ++++|++|+ |
T Consensus 271 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d 349 (437)
T 3gre_A 271 KNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEAT 349 (437)
T ss_dssp TTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGG
T ss_pred CCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCC
Confidence 4678999999999999999997765432111100000000 1112267789999999 778888876 9
Q ss_pred CEEEEEEcCCccchhhhhc------------------------------------cccCCeEEEEecCC--CCCCCCCcc
Q 013578 376 STLQWLSVETGKVLDTAEK------------------------------------AHEGEITCMAWAPK--TIPMGNQQV 417 (440)
Q Consensus 376 ~~i~i~d~~~~~~~~~~~~------------------------------------~h~~~v~~v~~~~~--~~~~~~~~~ 417 (440)
+.|++||+.+++....+.. .|.+.|++++|+++ +
T Consensus 350 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~-------- 421 (437)
T 3gre_A 350 SSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDET-------- 421 (437)
T ss_dssp TEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSS--------
T ss_pred CeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCc--------
Confidence 9999999999987766531 28999999999998 4
Q ss_pred eEEEEeeCCCeEEEEe
Q 013578 418 SVLATSSVDKKVKLWL 433 (440)
Q Consensus 418 ~~l~t~~~Dg~i~vw~ 433 (440)
.+|++|+.||.|+||+
T Consensus 422 ~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 422 PLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEEETTSCEEEEC
T ss_pred eEEEEEcCCceEEEeC
Confidence 7999999999999995
No 23
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-39 Score=289.39 Aligned_cols=291 Identities=12% Similarity=0.147 Sum_probs=234.8
Q ss_pred ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
....|.+|.+.|++++|+|+|++|++|+.||.|++||+.++. .......|...|.+++|+|+++++++++.+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d--- 95 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-----RLGTLDGHTGTIWSIDVDCFTKYCVTGSAD--- 95 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEETT---
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch-----hhhhhhhcCCcEEEEEEcCCCCEEEEEeCC---
Confidence 356789999999999999999999999999999999998764 345566788999999999999999999877
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCC-----ceEEEEeCC
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEG-----TDISIWHGK 237 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~vwd~~ 237 (440)
..+.+|+........ .+........+.+++++. ++++++.+ +.|++||+.
T Consensus 96 g~i~iwd~~~~~~~~------------------------~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~g~i~~~d~~ 150 (369)
T 3zwl_B 96 YSIKLWDVSNGQCVA------------------------TWKSPVPVKRVEFSPCGN-YFLAILDNVMKNPGSINIYEIE 150 (369)
T ss_dssp TEEEEEETTTCCEEE------------------------EEECSSCEEEEEECTTSS-EEEEEECCBTTBCCEEEEEEEE
T ss_pred CeEEEEECCCCcEEE------------------------EeecCCCeEEEEEccCCC-EEEEecCCccCCCCEEEEEEec
Confidence 467777655431111 011111223344578888 88888888 999999987
Q ss_pred CCc-----------eeeeeeCCCC--cccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEE
Q 013578 238 TGK-----------LLGNVDTNQL--KNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTW 304 (440)
Q Consensus 238 ~~~-----------~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~ 304 (440)
.+. .+..+..+.. .+.+++|+|++++|++++.||.|++||++... .....+..|...|.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~v~~ 223 (369)
T 3zwl_B 151 RDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY-------EYVDSIDLHEKSISD 223 (369)
T ss_dssp ECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT-------EEEEEEECCSSCEEE
T ss_pred CCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc-------EeEEEEecCCCceeE
Confidence 654 2333444444 89999999999999999999999999986522 256778889999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CC-------
Q 013578 305 LCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GS------- 376 (440)
Q Consensus 305 ~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~------- 376 (440)
++|+|++.+|++++.|+.|++||+++...... + .+...+..++|+|++++++++. ++
T Consensus 224 ~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-------~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 288 (369)
T 3zwl_B 224 MQFSPDLTYFITSSRDTNSFLVDVSTLQVLKK-------Y--------ETDCPLNTAVITPLKEFIILGGGQEAKDVTTT 288 (369)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEE-------E--------ECSSCEEEEEECSSSSEEEEEECCC-------
T ss_pred EEECCCCCEEEEecCCceEEEEECCCCceeee-------e--------cCCCCceeEEecCCCceEEEeecCCCceEEEE
Confidence 99999999999999999999999986543311 1 0234578899999999999865 44
Q ss_pred -------EEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 377 -------TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 377 -------~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
.+++||..+++.+..+ .+|.+.|++++|+|++ .+|++++.||.|++|+++.+
T Consensus 289 ~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~s~~~--------~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 289 SANEGKFEARFYHKIFEEEIGRV-QGHFGPLNTVAISPQG--------TSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp ------CEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTS--------SEEEEEETTSEEEEEEECHH
T ss_pred ecCCCcceeEEEecCCCcchhhe-ecccCcEEEEEECCCC--------CEEEEEcCCCeEEEEECccc
Confidence 8999999999999888 5899999999999998 89999999999999998753
No 24
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.2e-40 Score=288.19 Aligned_cols=257 Identities=16% Similarity=0.229 Sum_probs=200.3
Q ss_pred ccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcce
Q 013578 85 NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCS 164 (440)
Q Consensus 85 ~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~ 164 (440)
..+.+|.+.|++++|+|+|++||||+.|++|+|||+.++.. .......+|...|.+++|+++.
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~---~~~~~l~gH~~~V~~v~~~~~~-------------- 69 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ---ILIADLRGHEGPVWQVAWAHPM-------------- 69 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE---EEEEEEECCSSCEEEEEECCGG--------------
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc---EEEEEEcCCCccEEEEEeCCCC--------------
Confidence 35679999999999999999999999999999999986532 1334456788999999997531
Q ss_pred EEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc--ee
Q 013578 165 LYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK--LL 242 (440)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~ 242 (440)
++. +|++|+.|++|++||+++++ .+
T Consensus 70 ----------------------------------------------------~~~-~l~s~s~D~~v~iWd~~~~~~~~~ 96 (316)
T 3bg1_A 70 ----------------------------------------------------YGN-ILASCSYDRKVIIWREENGTWEKS 96 (316)
T ss_dssp ----------------------------------------------------GSS-CEEEEETTSCEEEECCSSSCCCEE
T ss_pred ----------------------------------------------------CCC-EEEEEECCCEEEEEECCCCcceEE
Confidence 111 78899999999999998873 56
Q ss_pred eeeeCCCCcccEEEecCC--CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCC----------
Q 013578 243 GNVDTNQLKNNMAAISPN--GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPN---------- 310 (440)
Q Consensus 243 ~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~---------- 310 (440)
..+..|...|.+++|+|+ +.+|++|+.|+.|++||++.... ......+.+|...|.+++|+|+
T Consensus 97 ~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 171 (316)
T 3bg1_A 97 HEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ-----WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHP 171 (316)
T ss_dssp EEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC-----EEECCBTTSSSSCBCCCEECCCCCC------C
T ss_pred EEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC-----cceeeeeccccCCcceEEEccccCCccccccc
Confidence 677889999999999998 88999999999999999865421 1124456789999999999997
Q ss_pred -------CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC----CEEEEec-CCEE
Q 013578 311 -------SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG----KILAATH-GSTL 378 (440)
Q Consensus 311 -------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g----~~l~~~~-~~~i 378 (440)
+.+|++++.|++|++||++..... . ......+|...|.+++|+|++ .+|++++ |+.|
T Consensus 172 ~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~-------~----~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v 240 (316)
T 3bg1_A 172 SGQKPNYIKRFASGGCDNLIKLWKEEEDGQW-------K----EEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRV 240 (316)
T ss_dssp CSCCCCCCCBEECCBTTSBCCEEEECTTSCE-------E----EEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEE
T ss_pred cccCccccceEEEecCCCeEEEEEeCCCCcc-------c----eeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeE
Confidence 468999999999999999643110 0 112234677789999999987 7788765 9999
Q ss_pred EEEEcCCc---cchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 379 QWLSVETG---KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 379 ~i~d~~~~---~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
++|++.+. +........|.+.|++++|+|++ .+|++++.||+|++|+..
T Consensus 241 ~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g--------~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 241 FIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITA--------NILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEECSSTTCCCCBCCEEEECSSCEEEEEECTTT--------CCEEEEESSSCEEEEEEC
T ss_pred EEEEccCccccchhhhhhhcCCCcEEEEEEcCCC--------CEEEEEcCCCeEEEEEEC
Confidence 99999873 21222225789999999999998 899999999999999976
No 25
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.9e-39 Score=305.91 Aligned_cols=299 Identities=25% Similarity=0.426 Sum_probs=241.8
Q ss_pred CCCCCCCCCcccCcc---ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceE
Q 013578 68 HSHGDKDQNKRHHPL---DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAV 144 (440)
Q Consensus 68 ~~~~~~~~~~~~~~~---~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v 144 (440)
..++..++..+.|.. .+..+.+|...|++++|+|++++|++++.|++|++|+.... .......|...|.++
T Consensus 236 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~------~~~~~~~h~~~v~~~ 309 (577)
T 2ymu_A 236 IASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ------LLQTLTGHSSSVWGV 309 (577)
T ss_dssp EEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC------EEEEECCCSSCEEEE
T ss_pred EEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc------EEEEEecCCCCeEEE
Confidence 344556777777754 46778899999999999999999999999999999997532 344556788999999
Q ss_pred EEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEE
Q 013578 145 AFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIAS 224 (440)
Q Consensus 145 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 224 (440)
+|+|+++.+++++.+ ..+.+|+...... .....+... ...+.++|+++ ++++
T Consensus 310 ~~~~~~~~l~t~~~d---~~i~~w~~~~~~~-----------------~~~~~~~~~-------v~~~~~s~~g~-~l~~ 361 (577)
T 2ymu_A 310 AFSPDGQTIASASDD---KTVKLWNRNGQHL-----------------QTLTGHSSS-------VWGVAFSPDGQ-TIAS 361 (577)
T ss_dssp EECTTSSEEEEEETT---SCEEEEETTSCEE-----------------EEECCCSSC-------EEEEEECTTSS-EEEE
T ss_pred EECCCCCEEEEEeCC---CeEEEEeCCCCee-----------------EEEeCCCCC-------EEEEEECCCCC-EEEE
Confidence 999999999999877 4566676432210 000111111 12234578888 8999
Q ss_pred eeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEE
Q 013578 225 CSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTW 304 (440)
Q Consensus 225 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~ 304 (440)
++.|+.|++||. +++.+..+..|...|.+++|+|++++|++++.|+.|++||.. + ..+..+.+|...|++
T Consensus 362 ~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~--------~~~~~~~~~~~~v~~ 431 (577)
T 2ymu_A 362 ASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G--------QLLQTLTGHSSSVWG 431 (577)
T ss_dssp EETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-C--------CEEEEEECCSSCEEE
T ss_pred EeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-C--------CEEEEecCCCCCeEE
Confidence 999999999995 578888899999999999999999999999999999999952 1 256678899999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEc
Q 013578 305 LCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSV 383 (440)
Q Consensus 305 ~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~ 383 (440)
++|+|++++|++++.|++|++||+... . .....+|...|.+++|+|++++|++++ |+.|++||.
T Consensus 432 ~~~s~d~~~l~~~~~d~~v~~w~~~~~-~--------------~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~ 496 (577)
T 2ymu_A 432 VAFSPDDQTIASASDDKTVKLWNRNGQ-L--------------LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 496 (577)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTSC-E--------------EEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred EEECCCCCEEEEEcCCCEEEEEECCCC-E--------------EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC
Confidence 999999999999999999999997532 1 111234566789999999999999865 899999995
Q ss_pred CCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 384 ETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 384 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
+++.+..+ .+|...|++++|+|++ ++|++++.||.|++||.+
T Consensus 497 -~~~~~~~~-~~h~~~v~~l~~s~dg--------~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 497 -NGQLLQTL-TGHSSSVRGVAFSPDG--------QTIASASDDKTVKLWNRN 538 (577)
T ss_dssp -TSCEEEEE-ECCSSCEEEEEECTTS--------SCEEEEETTSEEEEECTT
T ss_pred -CCCEEEEE-eCCCCCEEEEEEcCCC--------CEEEEEECcCEEEEEeCC
Confidence 67877777 5899999999999998 899999999999999964
No 26
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.9e-39 Score=281.86 Aligned_cols=268 Identities=16% Similarity=0.166 Sum_probs=219.2
Q ss_pred CCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCc
Q 013578 67 SHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPT 142 (440)
Q Consensus 67 ~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~ 142 (440)
..+++..|+.+++|.. .++.+.+|..+|.+++|+|++++|++|+.|++|++||+.+++ .......|...|.
T Consensus 27 ~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~-----~~~~~~~h~~~v~ 101 (304)
T 2ynn_A 27 WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-----KVVDFEAHPDYIR 101 (304)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC-----EEEEEECCSSCEE
T ss_pred EEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCc-----EEEEEeCCCCcEE
Confidence 3466778888888865 467888999999999999999999999999999999998765 3344567888999
Q ss_pred eEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEE
Q 013578 143 AVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTII 222 (440)
Q Consensus 143 ~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 222 (440)
+++|+|+++ ++
T Consensus 102 ~~~~~~~~~---------------------------------------------------------------------~l 112 (304)
T 2ynn_A 102 SIAVHPTKP---------------------------------------------------------------------YV 112 (304)
T ss_dssp EEEECSSSS---------------------------------------------------------------------EE
T ss_pred EEEEcCCCC---------------------------------------------------------------------EE
Confidence 999988765 68
Q ss_pred EEeeCCceEEEEeCCCC-ceeeeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578 223 ASCSEGTDISIWHGKTG-KLLGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300 (440)
Q Consensus 223 ~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~ 300 (440)
++|+.|++|++||++++ .....+..|...|.+++|+| ++.+|++|+.|+.|++||++.... ......+|..
T Consensus 113 ~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~-------~~~~~~~~~~ 185 (304)
T 2ynn_A 113 LSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-------NFTLTTGQER 185 (304)
T ss_dssp EEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC-------SEEEECCCTT
T ss_pred EEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc-------cceeccCCcC
Confidence 88999999999999887 45567888999999999999 678999999999999999865441 1222345668
Q ss_pred ceEEEEEcC--CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCE
Q 013578 301 AVTWLCFAP--NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GST 377 (440)
Q Consensus 301 ~v~~~~~~p--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~ 377 (440)
.|..+.|+| ++.+|++++.|++|++||++++.++. ...+|...|..++|+|++++|++|+ |+.
T Consensus 186 ~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~--------------~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~ 251 (304)
T 2ynn_A 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA--------------TLEGHMSNVSFAVFHPTLPIIISGSEDGT 251 (304)
T ss_dssp CEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEE--------------EEECCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred cEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccce--------------eeCCCCCCEEEEEECCCCCEEEEEcCCCe
Confidence 899999987 77899999999999999998765431 2235667799999999999999876 899
Q ss_pred EEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 378 LQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 378 i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
|++||..+++.+..+ ..|...+++++|+|++ . ..++++|+.| .+.+|++.+.
T Consensus 252 i~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~-~~~~asg~~~-g~~~~~~~~~ 303 (304)
T 2ynn_A 252 LKIWNSSTYKVEKTL-NVGLERSWCIATHPTG-----R-KNYIASGFDN-GFTVLSLGND 303 (304)
T ss_dssp EEEEETTTCCEEEEE-CCSSSSEEEEEECTTC-----G-GGCEEEEETT-EEEEEECC--
T ss_pred EEEEECCCCceeeec-cCCCccEEEEEECCCC-----C-ceEEEEecCC-ceEEEEeccC
Confidence 999999999999888 5888999999999986 1 1357777655 5888887654
No 27
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.7e-39 Score=291.01 Aligned_cols=310 Identities=15% Similarity=0.196 Sum_probs=227.3
Q ss_pred ccccccccCcceeEEEEccCC-CEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEcc-CCCeEEEEeecC
Q 013578 83 DVNTLKGHGDSVTGLCFSSDG-KCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFAD-NATSIVVATHNL 160 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~dg-~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~~~ 160 (440)
....+.+|.+.|++++|+|++ ++|++|+.||.|+|||+.+.... ......+|...|.+++|+| ++..+++++.+
T Consensus 65 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d- 140 (383)
T 3ei3_B 65 LHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT---SFIQGMGPGDAITGMKFNQFNTNQLFVSSIR- 140 (383)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE---EEECCCSTTCBEEEEEEETTEEEEEEEEETT-
T ss_pred eEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc---eeeecCCcCCceeEEEeCCCCCCEEEEEeCC-
Confidence 356788999999999999999 99999999999999999876532 2222246889999999999 67888888776
Q ss_pred CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc
Q 013578 161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK 240 (440)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 240 (440)
..+.+|+...... ..+.....+.. ....+.+++++. ++++++.|+.|++||+ +++
T Consensus 141 --~~i~iwd~~~~~~--------------~~~~~~~~~~~-------~v~~~~~~~~~~-~l~~~~~d~~i~i~d~-~~~ 195 (383)
T 3ei3_B 141 --GATTLRDFSGSVI--------------QVFAKTDSWDY-------WYCCVDVSVSRQ-MLATGDSTGRLLLLGL-DGH 195 (383)
T ss_dssp --TEEEEEETTSCEE--------------EEEECCCCSSC-------CEEEEEEETTTT-EEEEEETTSEEEEEET-TSC
T ss_pred --CEEEEEECCCCce--------------EEEeccCCCCC-------CeEEEEECCCCC-EEEEECCCCCEEEEEC-CCC
Confidence 5677776553210 00000011111 122334477888 9999999999999999 578
Q ss_pred eeeeeeCCCCcccEEEecCCCC-eEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC-CCCEEEEEe
Q 013578 241 LLGNVDTNQLKNNMAAISPNGR-FLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP-NSEQIITAS 318 (440)
Q Consensus 241 ~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~ 318 (440)
.+..+..|...|.+++|+|+++ +|++++.|+.|++||++...... ..+..+ +|...|.+++|+| ++.+|++++
T Consensus 196 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~ 270 (383)
T 3ei3_B 196 EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN----SYIAEM-PHEKPVNAAYFNPTDSTKLLTTD 270 (383)
T ss_dssp EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTT----CEEEEE-ECSSCEEEEEECTTTSCEEEEEE
T ss_pred EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCccc----ceEEEe-cCCCceEEEEEcCCCCCEEEEEc
Confidence 8889999999999999999999 99999999999999997643111 133334 6999999999999 999999999
Q ss_pred CCCcEEEEecCccccccCCCCccccc---cccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhcc
Q 013578 319 KDGTLRVWNINVRYHLDEDPKTLKVL---PIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKA 395 (440)
Q Consensus 319 ~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~ 395 (440)
.|+.|++||+++.............. .............+..++|+|++++ .++.|+.|++||+.+++.+..+...
T Consensus 271 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~ 349 (383)
T 3ei3_B 271 QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDP 349 (383)
T ss_dssp SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBT
T ss_pred CCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCC
Confidence 99999999998765432111000000 0000000001123445777777777 3345899999999999998887422
Q ss_pred -ccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 396 -HEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 396 -h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
|.+.+.+++|+|++ .+|++|+ ||.|++|++++
T Consensus 350 ~~~~~~~~~~~s~~g--------~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 350 NAAGIISLNKFSPTG--------DVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TBCSCCCEEEECTTS--------SEEEEEE-TTEEEEEECC-
T ss_pred CCCceEEEEEEecCc--------cEEEEec-CCcEEEEecCC
Confidence 56778888999998 8999997 99999999975
No 28
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.3e-38 Score=278.10 Aligned_cols=289 Identities=15% Similarity=0.185 Sum_probs=231.1
Q ss_pred cccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceE
Q 013578 86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSL 165 (440)
Q Consensus 86 ~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~ 165 (440)
...+|.+.|++++|+|++++|++++ ||.|++|++..+.............|...|.+++|+|+++++++++.+ ..+
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i 121 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA---STL 121 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS---SEE
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCC---CcE
Confidence 3448999999999999999999999 999999999876543322222334678899999999999999999876 467
Q ss_pred EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeee
Q 013578 166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNV 245 (440)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 245 (440)
.+|+........ ......+.. ....+.++++++ ++++++.|+.|++||+++++.+..+
T Consensus 122 ~~~d~~~~~~~~--------------~~~~~~~~~-------~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~~~~~~ 179 (337)
T 1gxr_A 122 SIWDLAAPTPRI--------------KAELTSSAP-------ACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQF 179 (337)
T ss_dssp EEEECCCC--EE--------------EEEEECSSS-------CEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEEECCCCCcce--------------eeecccCCC-------ceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeee
Confidence 777654431000 000001111 112234477777 8999999999999999999999999
Q ss_pred eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEE
Q 013578 246 DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRV 325 (440)
Q Consensus 246 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~i 325 (440)
..|...+.+++|+|++++|++++.||.|++||++..+ .+..+ .|...+.+++|+|++++|++++.|+.|++
T Consensus 180 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--------~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~ 250 (337)
T 1gxr_A 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR--------QLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEV 250 (337)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--------EEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCc--------eEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEE
Confidence 9999999999999999999999999999999986553 33333 47788999999999999999999999999
Q ss_pred EecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEE
Q 013578 326 WNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMA 404 (440)
Q Consensus 326 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 404 (440)
||+++.... ....+...+.+++|+|++++|++++ ++.|++||+.+++.+... .|...|.+++
T Consensus 251 ~~~~~~~~~---------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~--~~~~~v~~~~ 313 (337)
T 1gxr_A 251 LHVNKPDKY---------------QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS--KESSSVLSCD 313 (337)
T ss_dssp EETTSSCEE---------------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--ECSSCEEEEE
T ss_pred EECCCCCeE---------------EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe--cCCCcEEEEE
Confidence 999865321 1234556789999999999998865 899999999999887554 5899999999
Q ss_pred ecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578 405 WAPKTIPMGNQQVSVLATSSVDKKVKLWLA 434 (440)
Q Consensus 405 ~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~ 434 (440)
|+|++ .+|++++.||.|++|++
T Consensus 314 ~s~~~--------~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 314 ISVDD--------KYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ECTTS--------CEEEEEETTSCEEEEEE
T ss_pred ECCCC--------CEEEEecCCCeEEEEEE
Confidence 99998 89999999999999997
No 29
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.3e-39 Score=294.51 Aligned_cols=327 Identities=13% Similarity=0.137 Sum_probs=232.8
Q ss_pred cccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCc-ceeeEEecCCCCCCCceEEEccC----C---CeE
Q 013578 82 LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSK-SFKFLRINLPPGGPPTAVAFADN----A---TSI 153 (440)
Q Consensus 82 ~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~-~~~~~~~~~~~~~~v~~v~~~~~----~---~~l 153 (440)
...+.+.+|.+.|++++|+| ++|++|+.||+|++|++...... ..........|...|.+++|+|+ + ++|
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 34667899999999999998 79999999999999999876511 11223444578899999999999 9 899
Q ss_pred EEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccC----CCCCeE-EEEeeCC
Q 013578 154 VVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGT----ADGSTI-IASCSEG 228 (440)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-l~s~~~d 228 (440)
++++.+ ..+.+|+....... ....+.....+.... .......+.++ +++. + +++++.|
T Consensus 85 ~s~~~d---g~i~iw~~~~~~~~-----------~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~-~~l~~~~~d 147 (397)
T 1sq9_A 85 ATTSFS---GDLLFYRITREDET-----------KKVIFEKLDLLDSDM--KKHSFWALKWGASNDRLLS-HRLVATDVK 147 (397)
T ss_dssp EEEETT---SCEEEEEEEECTTT-----------CCEEEEEECCSCTTG--GGSCEEEEEEECCC----C-EEEEEEETT
T ss_pred EEEcCC---CCEEEEEccCCccc-----------ccccceeeccccccc--CCCcEEEEEEeeccCCCCc-eEEEEEeCC
Confidence 998877 45666665443210 000011111110000 00111223345 7777 6 9999999
Q ss_pred ceEEEEeCCC------Cceee-----ee-------eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeee
Q 013578 229 TDISIWHGKT------GKLLG-----NV-------DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVT 290 (440)
Q Consensus 229 ~~i~vwd~~~------~~~~~-----~~-------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 290 (440)
+.|++||+.+ ++.+. .+ ..|...+.+++|+|++ +|++++.||.|++||++...
T Consensus 148 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-------- 218 (397)
T 1sq9_A 148 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR-------- 218 (397)
T ss_dssp SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE--------
T ss_pred CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCc--------
Confidence 9999999998 66665 66 3478889999999999 99999999999999996543
Q ss_pred eeeeeec---c---ccceEEEEEcCCCCEEEEEeCC---CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeE
Q 013578 291 SVMQLKG---H---KSAVTWLCFAPNSEQIITASKD---GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRL 361 (440)
Q Consensus 291 ~~~~~~~---h---~~~v~~~~~~p~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 361 (440)
.+..+.. | ...|.+++|+|++.+|++++.| +.|++||++++..+......... .........+...|.++
T Consensus 219 ~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~ 297 (397)
T 1sq9_A 219 PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHS-SQASLGEFAHSSWVMSL 297 (397)
T ss_dssp EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC---------CCBSBSSCEEEE
T ss_pred eeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccc-ccccccccccCCcEEEE
Confidence 5667777 8 9999999999999999999999 99999999876443211100000 00000011156679999
Q ss_pred EeCCCCCEEEEec-CCEEEEEEcCCccchhhhhc------cc---------------cCCeEEEEecCCCCCC--CCCcc
Q 013578 362 SLSSDGKILAATH-GSTLQWLSVETGKVLDTAEK------AH---------------EGEITCMAWAPKTIPM--GNQQV 417 (440)
Q Consensus 362 ~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~------~h---------------~~~v~~v~~~~~~~~~--~~~~~ 417 (440)
+|+|++++|++++ |+.|++||+.+++.+..+ . +| ...|++++|+|++..+ +..+.
T Consensus 298 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~ 376 (397)
T 1sq9_A 298 SFNDSGETLCSAGWDGKLRFWDVKTKERITTL-NMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLN 376 (397)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTS
T ss_pred EECCCCCEEEEEeCCCeEEEEEcCCCceeEEE-ecccCcccchhhhhccccccccccCCceeEEEecccccccccccccc
Confidence 9999999999876 899999999999988877 4 56 8999999999995100 00011
Q ss_pred eEEEEeeCCCeEEEEeCCCCC
Q 013578 418 SVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 418 ~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
.+|++++.||.|++|++.+++
T Consensus 377 ~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 377 ESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp CEEEEEETTTEEEEEEEEC--
T ss_pred ceEEEecCCCcEEEEEcCCCC
Confidence 489999999999999998864
No 30
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=4.4e-39 Score=286.35 Aligned_cols=305 Identities=13% Similarity=0.102 Sum_probs=213.1
Q ss_pred CcceeEEEEccCCCEEEEeeCCC-------cEEEEecCCCCCccee---e--EEecCCCCCCCceEEEccCCCeEEEEee
Q 013578 91 GDSVTGLCFSSDGKCLATACADG-------VIRVHKLDDASSKSFK---F--LRINLPPGGPPTAVAFADNATSIVVATH 158 (440)
Q Consensus 91 ~~~V~~l~~s~dg~~l~t~s~dg-------~v~vW~~~~~~~~~~~---~--~~~~~~~~~~v~~v~~~~~~~~l~~~~~ 158 (440)
.-+|++++|+|||++|++||.|. .|++|++......... . ......+...|.++++ ++..++++..
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEEEEC
Confidence 34899999999999999997643 5999999876543211 1 1123456667877765 4567777654
Q ss_pred cCC--------cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEE-EEeeCCc
Q 013578 159 NLS--------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTII-ASCSEGT 229 (440)
Q Consensus 159 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~ 229 (440)
+.. ...+++|+............... ........ .....+.++|||+.++ ++++.|+
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~-------~~~~~~~~-------~~~~~v~fSpDg~~la~as~~~d~ 157 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVD-------FDASTNAD-------DYTKLVYISREGTVAAIASSKVPA 157 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEEC-------SSCCCCTT-------CCEEEEEECTTSSCEEEEESCSSC
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeec-------eeecCCcc-------cCEEEEEEcCCCCEEEEEECCCCC
Confidence 421 22344443322110000000000 00000000 0012345699999442 4566899
Q ss_pred eEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC
Q 013578 230 DISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP 309 (440)
Q Consensus 230 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p 309 (440)
+|++||+++++++..+. |...|.+++|+|+|++|++++. +.+++|+...+. ........+|...|.+++|+|
T Consensus 158 ~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~------~~~~~~~~~~~~~v~~v~fsp 229 (365)
T 4h5i_A 158 IMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGS------CIARKTDFDKNWSLSKINFIA 229 (365)
T ss_dssp EEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCC------EEEEECCCCTTEEEEEEEEEE
T ss_pred EEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCc------ceeeeecCCCCCCEEEEEEcC
Confidence 99999999999988886 5678999999999999999985 456777654433 012234557889999999999
Q ss_pred CCCEEEEEeCCC----cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcC
Q 013578 310 NSEQIITASKDG----TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVE 384 (440)
Q Consensus 310 ~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~ 384 (440)
++.++++++.|+ .+++|++...... ........++...|++++|+|||++||+|+ |+.|+|||+.
T Consensus 230 dg~~l~~~s~d~~~~~~i~~~~~~~~~~~----------~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~ 299 (365)
T 4h5i_A 230 DDTVLIAASLKKGKGIVLTKISIKSGNTS----------VLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLK 299 (365)
T ss_dssp TTEEEEEEEESSSCCEEEEEEEEETTEEE----------EEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred CCCEEEEEecCCcceeEEeecccccceec----------ceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECC
Confidence 999999999887 5888888644221 001122235566799999999999999876 8999999999
Q ss_pred CccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 385 TGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 385 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
+++++..+..+|...|++++|+||+ ++|+|||.|++||||+++..
T Consensus 300 ~~~~~~~~~~gH~~~V~~v~fSpdg--------~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 300 DLSMSKIFKQAHSFAITEVTISPDS--------TYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TTEEEEEETTSSSSCEEEEEECTTS--------CEEEEEETTSEEEEEECCTT
T ss_pred CCcEEEEecCcccCCEEEEEECCCC--------CEEEEEeCCCeEEEEEcCCC
Confidence 9999988667999999999999999 89999999999999999754
No 31
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.8e-39 Score=289.78 Aligned_cols=305 Identities=13% Similarity=0.121 Sum_probs=228.2
Q ss_pred ccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEE
Q 013578 87 LKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLY 166 (440)
Q Consensus 87 l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~ 166 (440)
+..|.++|++++|+|++++|++|+.||.|++||+.++.. ........|...|.+++|+|+++++++++.+ ..+.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d---g~i~ 77 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW---VQVHELKEHNGQVTGVDWAPDSNRIVTCGTD---RNAY 77 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE---EEEEEEECCSSCEEEEEEETTTTEEEEEETT---SCEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE---EeeeeecCCCCcccEEEEeCCCCEEEEEcCC---CeEE
Confidence 456999999999999999999999999999999987631 1334445788999999999999999999877 4566
Q ss_pred eeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce---ee
Q 013578 167 MYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL---LG 243 (440)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~---~~ 243 (440)
+|+.......... ....+.. ....+.++++++ ++++++.|+.|++||+..++. ..
T Consensus 78 vwd~~~~~~~~~~--------------~~~~~~~-------~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~ 135 (372)
T 1k8k_C 78 VWTLKGRTWKPTL--------------VILRINR-------AARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCK 135 (372)
T ss_dssp EEEEETTEEEEEE--------------ECCCCSS-------CEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEE
T ss_pred EEECCCCeeeeeE--------------EeecCCC-------ceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeee
Confidence 6665432100000 0000111 122334477887 899999999999999988763 23
Q ss_pred e-eeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCc----------eeeeeeeeeeeccccceEEEEEcCCCC
Q 013578 244 N-VDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGL----------VKAVTSVMQLKGHKSAVTWLCFAPNSE 312 (440)
Q Consensus 244 ~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~----------~~~~~~~~~~~~h~~~v~~~~~~p~~~ 312 (440)
. ...|...+.+++|+|++++|++++.||.|++||++...... ......+..+.+|...|.+++|+|++.
T Consensus 136 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 215 (372)
T 1k8k_C 136 HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS 215 (372)
T ss_dssp EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS
T ss_pred eeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC
Confidence 3 35678899999999999999999999999999975221000 001125667778999999999999999
Q ss_pred EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCC--cc---
Q 013578 313 QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVET--GK--- 387 (440)
Q Consensus 313 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~--~~--- 387 (440)
+|++++.|+.|++||++++..+. ....+...+.+++|+|++++|++|.|+.|++|++.+ ++
T Consensus 216 ~l~~~~~d~~i~i~d~~~~~~~~--------------~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~ 281 (372)
T 1k8k_C 216 RVAWVSHDSTVCLADADKKMAVA--------------TLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSF 281 (372)
T ss_dssp EEEEEETTTEEEEEEGGGTTEEE--------------EEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEE
T ss_pred EEEEEeCCCEEEEEECCCCceeE--------------EEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEE
Confidence 99999999999999998664321 112345568899999999999999999999999988 42
Q ss_pred -----------------------------ch------hhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEE
Q 013578 388 -----------------------------VL------DTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432 (440)
Q Consensus 388 -----------------------------~~------~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw 432 (440)
.. ..+..+|.+.|++++|.+.. +.+..+|+||+.||.|++|
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----g~~~~~l~s~~~Dg~i~~W 357 (372)
T 1k8k_C 282 GGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGG----KAKCSQFCTTGMDGGMSIW 357 (372)
T ss_dssp CCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEEST----TTSCSEEEEEETTSEEEEE
T ss_pred eeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCC----CcceeeEEEecCCCceEEE
Confidence 00 23324899999999987542 0111599999999999999
Q ss_pred eCCCC
Q 013578 433 LAPSL 437 (440)
Q Consensus 433 ~~~~~ 437 (440)
++.++
T Consensus 358 ~~~~~ 362 (372)
T 1k8k_C 358 DVRSL 362 (372)
T ss_dssp EHHHH
T ss_pred EecCh
Confidence 98654
No 32
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.6e-38 Score=277.65 Aligned_cols=265 Identities=18% Similarity=0.250 Sum_probs=215.5
Q ss_pred CCCCCCCCCCCcccCccc------cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCC
Q 013578 66 HSHSHGDKDQNKRHHPLD------VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGG 139 (440)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~------~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~ 139 (440)
....+++.|+.+++|... ...+.+|...|.+++|++++.++++|+.|++|++||+.++. .......+..
T Consensus 49 ~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~-----~~~~~~~~~~ 123 (321)
T 3ow8_A 49 ETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK-----QIKSIDAGPV 123 (321)
T ss_dssp CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----EEEEEECCTT
T ss_pred CEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCC-----EEEEEeCCCc
Confidence 346788889999998642 34689999999999999999999999999999999998764 2333445667
Q ss_pred CCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCC
Q 013578 140 PPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGS 219 (440)
Q Consensus 140 ~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (440)
.+.+++|+|+++++++++.+ ..+.+|+......... . ..+.. ....+.++|+++
T Consensus 124 ~~~~~~~spdg~~l~~g~~d---g~v~i~~~~~~~~~~~-------------~---~~~~~-------~v~~~~~spdg~ 177 (321)
T 3ow8_A 124 DAWTLAFSPDSQYLATGTHV---GKVNIFGVESGKKEYS-------------L---DTRGK-------FILSIAYSPDGK 177 (321)
T ss_dssp CCCCEEECTTSSEEEEECTT---SEEEEEETTTCSEEEE-------------E---ECSSS-------CEEEEEECTTSS
T ss_pred cEEEEEECCCCCEEEEEcCC---CcEEEEEcCCCceeEE-------------e---cCCCc-------eEEEEEECCCCC
Confidence 89999999999999999876 4666776544311100 0 00111 112344588888
Q ss_pred eEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccc
Q 013578 220 TIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK 299 (440)
Q Consensus 220 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~ 299 (440)
+|++++.|+.|++||+++++.+..+..|...|.+++|+|++++|++|+.|+.|++||++... ....+.+|.
T Consensus 178 -~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~--------~~~~~~~h~ 248 (321)
T 3ow8_A 178 -YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN--------LAGTLSGHA 248 (321)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC--------EEEEECCCS
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc--------eeEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999986554 567788999
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEE
Q 013578 300 SAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTL 378 (440)
Q Consensus 300 ~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i 378 (440)
..|.+++|+|++.+|++++.|++|++||++++.++. ...+|...|.+++|+|++++|++++ |+.|
T Consensus 249 ~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~--------------~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i 314 (321)
T 3ow8_A 249 SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVH--------------TFFDHQDQVWGVKYNGNGSKIVSVGDDQEI 314 (321)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--------------EECCCSSCEEEEEECTTSSEEEEEETTCCE
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEE--------------EEcCCCCcEEEEEECCCCCEEEEEeCCCeE
Confidence 999999999999999999999999999998765432 1234566799999999999888865 8999
Q ss_pred EEEEcC
Q 013578 379 QWLSVE 384 (440)
Q Consensus 379 ~i~d~~ 384 (440)
++||..
T Consensus 315 ~vwd~p 320 (321)
T 3ow8_A 315 HIYDCP 320 (321)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 999963
No 33
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=8.1e-39 Score=286.10 Aligned_cols=314 Identities=13% Similarity=0.113 Sum_probs=226.9
Q ss_pred ccccccCcceeEEEEccC----CCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccC----CCeEEEE
Q 013578 85 NTLKGHGDSVTGLCFSSD----GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADN----ATSIVVA 156 (440)
Q Consensus 85 ~~l~~H~~~V~~l~~s~d----g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~----~~~l~~~ 156 (440)
....+|.+.|++++|+|+ ...+++++.++.|++|++.++.............+...|.+++|+|+ +.+++++
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 345689999999999984 45666667777999999986543322112222346788999999999 5678888
Q ss_pred eecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCC-CCCeEEEEeeCCceEEEEe
Q 013578 157 THNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA-DGSTIIASCSEGTDISIWH 235 (440)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~~~d~~i~vwd 235 (440)
+.+ ..+.+|+........ ....+... ...+.++| ++. ++++++.|+.|++||
T Consensus 92 ~~d---g~i~v~d~~~~~~~~----------------~~~~~~~~-------i~~~~~~~~~~~-~l~s~~~dg~i~iwd 144 (366)
T 3k26_A 92 GSR---GIIRIINPITMQCIK----------------HYVGHGNA-------INELKFHPRDPN-LLLSVSKDHALRLWN 144 (366)
T ss_dssp ETT---CEEEEECTTTCCEEE----------------EEESCCSC-------EEEEEECSSCTT-EEEEEETTSCEEEEE
T ss_pred cCC---CEEEEEEchhceEee----------------eecCCCCc-------EEEEEECCCCCC-EEEEEeCCCeEEEEE
Confidence 876 577788765431110 00111111 22334467 555 999999999999999
Q ss_pred CCCCceeeee---eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCce--------------------eeeeee
Q 013578 236 GKTGKLLGNV---DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLV--------------------KAVTSV 292 (440)
Q Consensus 236 ~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~--------------------~~~~~~ 292 (440)
+.+++.+..+ ..|...+.+++|+|++++|++++.||.|++||++....... ......
T Consensus 145 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (366)
T 3k26_A 145 IQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDF 224 (366)
T ss_dssp TTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSE
T ss_pred eecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcc
Confidence 9999988887 67899999999999999999999999999999875431000 000112
Q ss_pred eeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC--CCEE
Q 013578 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD--GKIL 370 (440)
Q Consensus 293 ~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l 370 (440)
....+|...|.+++|+ +++|++++.|+.|++||+++.......................+...|.+++|+|+ +++|
T Consensus 225 ~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l 302 (366)
T 3k26_A 225 STRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKML 302 (366)
T ss_dssp EECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEE
T ss_pred ccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEE
Confidence 2334599999999998 77999999999999999987644211111110000112223345566889999999 9999
Q ss_pred EEec-CCEEEEEEcCCccchh----hhhccc--cCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 371 AATH-GSTLQWLSVETGKVLD----TAEKAH--EGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 371 ~~~~-~~~i~i~d~~~~~~~~----~~~~~h--~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
++++ |+.|++||+.+++... .+ .+| ...|++++|+|++ .+|++++.||.|++||+.+
T Consensus 303 ~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~--------~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 303 ALGNQVGKLYVWDLEVEDPHKAKCTTL-THHKCGAAIRQTSFSRDS--------SILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEECTTSCEEEEECCSSSGGGCEEEEE-CCTTCCSCEEEEEECTTS--------SEEEEEETTSEEEEEEC--
T ss_pred EEEecCCcEEEEECCCCCCccccceEE-cccccCCceEEEEeCCCC--------CeEEEEeCCCEEEEEEecC
Confidence 9876 8999999999987654 44 356 7899999999998 8999999999999999863
No 34
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=9.9e-38 Score=283.29 Aligned_cols=315 Identities=17% Similarity=0.253 Sum_probs=229.6
Q ss_pred ccccccccCcceeEEEEcc-CCCEEEEeeCCCcEEEEecCCCCCcceeeEE--------ecCCCCCCCceEEEcc-CCCe
Q 013578 83 DVNTLKGHGDSVTGLCFSS-DGKCLATACADGVIRVHKLDDASSKSFKFLR--------INLPPGGPPTAVAFAD-NATS 152 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~--------~~~~~~~~v~~v~~~~-~~~~ 152 (440)
....+.+|.+.|++++|+| ++++|++|+.||.|++||+.+.......... ....|...|.+++|+| ++..
T Consensus 35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 3556789999999999999 9999999999999999999877544221111 0124788999999999 6778
Q ss_pred EEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEE
Q 013578 153 IVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDIS 232 (440)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 232 (440)
+++++.+ ..+.+|+........... .........+ ....+++. ++++++.|+.|+
T Consensus 115 l~s~~~d---~~i~iwd~~~~~~~~~~~-----------------~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~v~ 169 (408)
T 4a11_B 115 FTSSSFD---KTLKVWDTNTLQTADVFN-----------------FEETVYSHHM----SPVSTKHC-LVAVGTRGPKVQ 169 (408)
T ss_dssp EEEEETT---SEEEEEETTTTEEEEEEE-----------------CSSCEEEEEE----CSSCSSCC-EEEEEESSSSEE
T ss_pred EEEEeCC---CeEEEeeCCCCccceecc-----------------CCCceeeeEe----ecCCCCCc-EEEEEcCCCeEE
Confidence 8888766 567777665432111100 0000001000 11123444 899999999999
Q ss_pred EEeCCCCceeeeeeCCCCcccEEEecCCCC-eEEEEecCCCEEEEEeEecCCCce--------eeeeeeeeeeccccceE
Q 013578 233 IWHGKTGKLLGNVDTNQLKNNMAAISPNGR-FLAAAAFTADVKVWEIVYSKDGLV--------KAVTSVMQLKGHKSAVT 303 (440)
Q Consensus 233 vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~--------~~~~~~~~~~~h~~~v~ 303 (440)
+||+.+++.+..+..|...+.+++|+|+++ +|++++.||.|++||++....... ..........+|...|.
T Consensus 170 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 249 (408)
T 4a11_B 170 LCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVN 249 (408)
T ss_dssp EEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEE
T ss_pred EEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCcee
Confidence 999999999999999999999999999998 588999999999999976541100 00011222367899999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEc
Q 013578 304 WLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSV 383 (440)
Q Consensus 304 ~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~ 383 (440)
+++|+|++++|++++.||.|++||++++........... ................+.+++++.++.|++||+
T Consensus 250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~ 321 (408)
T 4a11_B 250 GLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVC--------NNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTV 321 (408)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCC--------CCCSSCCCCEECCSSSSCEEEEEETTEEEEEET
T ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccc--------ccccccceeEEecCCCceEEEEecCCEEEEEEC
Confidence 999999999999999999999999997654322111100 000011112233445566777788999999999
Q ss_pred CCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 384 ETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 384 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
.+++.+..+ .+|.+.|++++|+|++ .+|++++.||.|++|++.+++.
T Consensus 322 ~~~~~~~~~-~~~~~~v~~~~~s~~~--------~~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 322 YSGEQITML-KGHYKTVDCCVFQSNF--------QELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp TTCCEEEEE-CCCSSCEEEEEEETTT--------TEEEEEETTSCEEEEEECC---
T ss_pred cCCcceeee-ccCCCeEEEEEEcCCC--------CEEEEECCCCeEEEEeCCCCCc
Confidence 999999988 5899999999999998 8999999999999999988753
No 35
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-38 Score=288.89 Aligned_cols=319 Identities=12% Similarity=0.158 Sum_probs=241.8
Q ss_pred CCCCCcccCcccc------ccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEE
Q 013578 72 DKDQNKRHHPLDV------NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA 145 (440)
Q Consensus 72 ~~~~~~~~~~~~~------~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~ 145 (440)
..++.+++|.... .....|...|++++|+|++++|++|+.||.|++|++...... .........|...|.+++
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~-~~~~~~~~~h~~~v~~~~ 120 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNA-INSMARFSNHSSSVKTVK 120 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSC-CCEEEECCCSSSCCCEEE
T ss_pred CCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeeccccccc-ccchhhccCCccceEEEE
Confidence 5677777775431 222368999999999999999999999999999999873211 124455667889999999
Q ss_pred EccC-CCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEE
Q 013578 146 FADN-ATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIAS 224 (440)
Q Consensus 146 ~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 224 (440)
|+|+ +.++++++.+ ..+.+|+............ .........+.. ....+.+++++..++++
T Consensus 121 ~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~-------~v~~~~~~~~~~~~l~~ 183 (416)
T 2pm9_A 121 FNAKQDNVLASGGNN---GEIFIWDMNKCTESPSNYT-------PLTPGQSMSSVD-------EVISLAWNQSLAHVFAS 183 (416)
T ss_dssp ECSSSTTBEEEECSS---SCEEBCBTTTTSSCTTTCC-------CBCCCCSCCSSC-------CCCEEEECSSCTTEEEE
T ss_pred EcCCCCCEEEEEcCC---CeEEEEECCCCcccccccc-------ccccccccCCCC-------CeeEEEeCCCCCcEEEE
Confidence 9998 8888888876 5688887765421000000 000000011111 12234457775559999
Q ss_pred eeCCceEEEEeCCCCceeeeeeCC------CCcccEEEecCCC-CeEEEEecCC---CEEEEEeEecCCCceeeeeeeee
Q 013578 225 CSEGTDISIWHGKTGKLLGNVDTN------QLKNNMAAISPNG-RFLAAAAFTA---DVKVWEIVYSKDGLVKAVTSVMQ 294 (440)
Q Consensus 225 ~~~d~~i~vwd~~~~~~~~~~~~~------~~~v~~~~~s~~~-~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~ 294 (440)
++.|+.|++||+++++.+..+..+ ...+.+++|+|++ .+|++++.|+ .|++||++... .....
T Consensus 184 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-------~~~~~ 256 (416)
T 2pm9_A 184 AGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-------TPLQT 256 (416)
T ss_dssp ESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-------SCSBC
T ss_pred EcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-------CCcEE
Confidence 999999999999999998888776 7889999999997 6899999998 99999997653 14556
Q ss_pred ee-ccccceEEEEEcC-CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC-CEEE
Q 013578 295 LK-GHKSAVTWLCFAP-NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG-KILA 371 (440)
Q Consensus 295 ~~-~h~~~v~~~~~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~ 371 (440)
+. +|...|.+++|+| ++.+|++++.|+.|++||++++..+. ...+|...|.+++|+|++ .+|+
T Consensus 257 ~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~--------------~~~~~~~~v~~~~~s~~~~~~l~ 322 (416)
T 2pm9_A 257 LNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLS--------------QFPARGNWCFKTKFAPEAPDLFA 322 (416)
T ss_dssp CCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEE--------------EEECSSSCCCCEEECTTCTTEEE
T ss_pred eecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccce--------------eecCCCCceEEEEECCCCCCEEE
Confidence 77 8999999999999 99999999999999999998754321 112455668899999999 7888
Q ss_pred Eec-CCEEEEEEcCCccchhhhh----------------------------------ccccCCeEEEEecCCCCCCCCCc
Q 013578 372 ATH-GSTLQWLSVETGKVLDTAE----------------------------------KAHEGEITCMAWAPKTIPMGNQQ 416 (440)
Q Consensus 372 ~~~-~~~i~i~d~~~~~~~~~~~----------------------------------~~h~~~v~~v~~~~~~~~~~~~~ 416 (440)
+++ |+.|++||+.+++...... ..|...+.+++|+|++
T Consensus 323 s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg------- 395 (416)
T 2pm9_A 323 CASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGG------- 395 (416)
T ss_dssp ECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTT-------
T ss_pred EEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCC-------
Confidence 865 8999999998876443221 1166788899999999
Q ss_pred ceEEEEeeCCCeEEEEeCCCC
Q 013578 417 VSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 417 ~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
++|++++.||.|+||++.+.
T Consensus 396 -~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 396 -KLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp -EEECBCTTSSCBCCBCCCCC
T ss_pred -eEEEEeCCCCeEEEEEeccC
Confidence 99999999999999999875
No 36
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-38 Score=273.74 Aligned_cols=288 Identities=17% Similarity=0.216 Sum_probs=226.2
Q ss_pred cccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578 82 LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS 161 (440)
Q Consensus 82 ~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~ 161 (440)
..++++.+|.+.|++++| |++++|++|+.||.|++||+.+.. .......|...|.+++|+|+++.+++++.++
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg- 81 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW-----LGTVVYTGQGFLNSVCYDSEKELLLFGGKDT- 81 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE-----EEEEEEECSSCEEEEEEETTTTEEEEEETTS-
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE-----EEEEeecCCccEEEEEECCCCCEEEEecCCC-
Confidence 457789999999999999 999999999999999999997653 3344446678999999999999999999884
Q ss_pred cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578 162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL 241 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 241 (440)
.+.+|+........ ....+ ..+...+... .+ +++ ++++++.|+.|++|| .++.
T Consensus 82 --~i~~~~~~~~~~~~----------~~~~~---~~~~~~i~~~-------~~--~~~-~l~~~~~d~~i~~~d--~~~~ 134 (313)
T 3odt_A 82 --MINGVPLFATSGED----------PLYTL---IGHQGNVCSL-------SF--QDG-VVISGSWDKTAKVWK--EGSL 134 (313)
T ss_dssp --CEEEEETTCCTTSC----------C-CEE---CCCSSCEEEE-------EE--ETT-EEEEEETTSEEEEEE--TTEE
T ss_pred --eEEEEEeeecCCCC----------cccch---hhcccCEEEE-------Ee--cCC-EEEEEeCCCCEEEEc--CCcE
Confidence 44444433221000 00000 1111111111 11 344 899999999999999 6778
Q ss_pred eeeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec-cccceEEEEEcCCCCEEEEEeC
Q 013578 242 LGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG-HKSAVTWLCFAPNSEQIITASK 319 (440)
Q Consensus 242 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~~~ 319 (440)
+..+..|...+.++.+.| ++++|++++.||.|++||... ....+.. |...|.+++|+|++. |++++.
T Consensus 135 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~----------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~ 203 (313)
T 3odt_A 135 VYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK----------VIKTFSGIHNDVVRHLAVVDDGH-FISCSN 203 (313)
T ss_dssp EEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE----------EEEEECSSCSSCEEEEEEEETTE-EEEEET
T ss_pred EEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc----------eEEEEeccCcccEEEEEEcCCCe-EEEccC
Confidence 888889999999999988 999999999999999999321 3445555 889999999999998 999999
Q ss_pred CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCC
Q 013578 320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGE 399 (440)
Q Consensus 320 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~ 399 (440)
||.|++||++++..+. ...+|...|.+++|+|++.+++++.|+.|++||+.+++.+..+ ..|...
T Consensus 204 dg~i~i~d~~~~~~~~--------------~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~ 268 (313)
T 3odt_A 204 DGLIKLVDMHTGDVLR--------------TYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVI-TLPAIS 268 (313)
T ss_dssp TSEEEEEETTTCCEEE--------------EEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEE-ECSSSC
T ss_pred CCeEEEEECCchhhhh--------------hhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEE-eccCce
Confidence 9999999998654321 1124556799999999997666677999999999999998888 589999
Q ss_pred eEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 400 ITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 400 v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
|.+++|+|++ . +++++.||.|++|++.+++
T Consensus 269 i~~~~~~~~~--------~-~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 269 IWSVDCMSNG--------D-IIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp EEEEEECTTS--------C-EEEEETTSCEEEEESCGGG
T ss_pred EEEEEEccCC--------C-EEEEeCCCcEEEEeCCCCc
Confidence 9999999997 5 7789999999999998764
No 37
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-39 Score=290.32 Aligned_cols=306 Identities=15% Similarity=0.113 Sum_probs=217.7
Q ss_pred ccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEE
Q 013578 87 LKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLY 166 (440)
Q Consensus 87 l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~ 166 (440)
++.|.++|++++|+|+|++|++|+.||.|+||++.++.. ........|...|.+++|+|++++|++++.+ ..+.
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d---~~v~ 80 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW---KHARTFSDHDKIVTCVDWAPKSNRIVTCSQD---RNAY 80 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE---EECCCBCCCSSCEEEEEECTTTCCEEEEETT---SSEE
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce---EEEEEEecCCceEEEEEEeCCCCEEEEEeCC---CeEE
Confidence 455778999999999999999999999999999986521 2334556788999999999999999999977 4677
Q ss_pred eeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc---eee
Q 013578 167 MYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK---LLG 243 (440)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~---~~~ 243 (440)
+|+........ .... ...+... ...+.++|+++ +|++++.|+.|++||+++++ ...
T Consensus 81 vwd~~~~~~~~----------~~~~---~~~~~~~-------v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~ 139 (377)
T 3dwl_C 81 VYEKRPDGTWK----------QTLV---LLRLNRA-------ATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSK 139 (377)
T ss_dssp EC------CCC----------CEEE---CCCCSSC-------EEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCE
T ss_pred EEEcCCCCcee----------eeeE---ecccCCc-------eEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeee
Confidence 77765532000 0000 0111111 22334577877 89999999999999999887 366
Q ss_pred eeeC-CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCc----------eeeeeeeeeeeccccceEEEEEcCCCC
Q 013578 244 NVDT-NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGL----------VKAVTSVMQLKGHKSAVTWLCFAPNSE 312 (440)
Q Consensus 244 ~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~----------~~~~~~~~~~~~h~~~v~~~~~~p~~~ 312 (440)
.+.. |...+.+++|+|++++|++++.|+.|++||+....... ......+..+ +|...|.+++|+|+++
T Consensus 140 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~ 218 (377)
T 3dwl_C 140 HLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN 218 (377)
T ss_dssp EECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS
T ss_pred EeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC
Confidence 7776 89999999999999999999999999999985322100 0112345555 8999999999999999
Q ss_pred EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCcc--ch-
Q 013578 313 QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGK--VL- 389 (440)
Q Consensus 313 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~--~~- 389 (440)
+|++++.|+.|++||++++..... ......+|...|.+++|+|++++|++++++.+.+|+..... ..
T Consensus 219 ~l~~~~~d~~i~iwd~~~~~~~~~----------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 288 (377)
T 3dwl_C 219 ALAYAGHDSSVTIAYPSAPEQPPR----------ALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTR 288 (377)
T ss_dssp CEEEEETTTEEC-CEECSTTSCEE----------ECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC---CCSB
T ss_pred EEEEEeCCCcEEEEECCCCCCcce----------eeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEEEe
Confidence 999999999999999987643100 01222345667899999999999999987777788765221 00
Q ss_pred ------------------------------------------------hhhhccccCCeEEEEecCCCCCCCCCcceEEE
Q 013578 390 ------------------------------------------------DTAEKAHEGEITCMAWAPKTIPMGNQQVSVLA 421 (440)
Q Consensus 390 ------------------------------------------------~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~ 421 (440)
..+...|.+.|+++++.+... .+...|+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~----~~~~~~~ 364 (377)
T 3dwl_C 289 DLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTP----GNITAFT 364 (377)
T ss_dssp CCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEET----TEEEEEE
T ss_pred eecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCC----CceEEEE
Confidence 001123999999999876531 1113799
Q ss_pred EeeCCCeEEEEeC
Q 013578 422 TSSVDKKVKLWLA 434 (440)
Q Consensus 422 t~~~Dg~i~vw~~ 434 (440)
|||.||.|++||+
T Consensus 365 s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 365 SSGTDGRVVLWTL 377 (377)
T ss_dssp EEETTSEEEEECC
T ss_pred eecCCCcEEEecC
Confidence 9999999999986
No 38
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-38 Score=287.98 Aligned_cols=318 Identities=14% Similarity=0.164 Sum_probs=240.3
Q ss_pred CCCCCCCCCCcccCcc--------------ccccccc----------cCcceeEEEEccCCCEEEEeeCCCcEEEEecCC
Q 013578 67 SHSHGDKDQNKRHHPL--------------DVNTLKG----------HGDSVTGLCFSSDGKCLATACADGVIRVHKLDD 122 (440)
Q Consensus 67 ~~~~~~~~~~~~~~~~--------------~~~~l~~----------H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~ 122 (440)
..+++..++..++|.. ....+.. |.+.|++++|+|++++|++|+.||.|++|+..
T Consensus 60 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~- 138 (425)
T 1r5m_A 60 ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKT- 138 (425)
T ss_dssp EEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEETT-
T ss_pred EEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC-
Confidence 4456667777777766 2222333 78899999999999999999999999999933
Q ss_pred CCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeeccccccccee
Q 013578 123 ASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRA 202 (440)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (440)
+. .......|...|.+++|+|+++++++++.+ ..+.+|+.................. .. . ....
T Consensus 139 ~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~-~~--~-----~~~~ 202 (425)
T 1r5m_A 139 GA-----LLNVLNFHRAPIVSVKWNKDGTHIISMDVE---NVTILWNVISGTVMQHFELKETGGS-SI--N-----AENH 202 (425)
T ss_dssp SC-----EEEEECCCCSCEEEEEECTTSSEEEEEETT---CCEEEEETTTTEEEEEECCC--------------------
T ss_pred CC-----eeeeccCCCccEEEEEECCCCCEEEEEecC---CeEEEEECCCCcEEEEeeccccCcc-ce--e-----eccc
Confidence 22 344556788999999999999999999876 4566776544321111110000000 00 0 0000
Q ss_pred EEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecC
Q 013578 203 ILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSK 282 (440)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 282 (440)
.........+.+++++ .+++++.++.|++||+.+++.+..+..|...+.+++|+|++++|++++.||.|++||++...
T Consensus 203 ~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 280 (425)
T 1r5m_A 203 SGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN 280 (425)
T ss_dssp ---CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBS
T ss_pred cCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence 0000002233334443 68899999999999999999998998999999999999999999999999999999987665
Q ss_pred CCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEE
Q 013578 283 DGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS 362 (440)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 362 (440)
....+.+|...|.+++|+|++ +|++++.|+.|++||++++..+. ....+...+.+++
T Consensus 281 --------~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~--------------~~~~~~~~i~~~~ 337 (425)
T 1r5m_A 281 --------SQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLA--------------LSIVDGVPIFAGR 337 (425)
T ss_dssp --------CSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEE--------------EEECTTCCEEEEE
T ss_pred --------cceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeE--------------ecccCCccEEEEE
Confidence 566778899999999999999 99999999999999998654321 1113445688999
Q ss_pred eCCCCCEEEEec-CCEEEEEEcCCcc--------------------chhhhhccccC--CeEEEEecCCCCCCCCCcceE
Q 013578 363 LSSDGKILAATH-GSTLQWLSVETGK--------------------VLDTAEKAHEG--EITCMAWAPKTIPMGNQQVSV 419 (440)
Q Consensus 363 ~s~~g~~l~~~~-~~~i~i~d~~~~~--------------------~~~~~~~~h~~--~v~~v~~~~~~~~~~~~~~~~ 419 (440)
|+|++++|++++ ++.|++||+.+++ .+..+ .+|.. .|++++|+|++ ++
T Consensus 338 ~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~--------~~ 408 (425)
T 1r5m_A 338 ISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY-QSSQDNDYIFDLSWNCAG--------NK 408 (425)
T ss_dssp ECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEE-CCTTCCCCEEEEEECTTS--------SE
T ss_pred EcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhh-cCcccCCceEEEEccCCC--------ce
Confidence 999999999876 8999999999888 67777 47766 99999999998 89
Q ss_pred EEEeeCCCeEEEEeCC
Q 013578 420 LATSSVDKKVKLWLAP 435 (440)
Q Consensus 420 l~t~~~Dg~i~vw~~~ 435 (440)
|++++.||.|++|+++
T Consensus 409 l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 409 ISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEESSSCCEEEECC
T ss_pred EEEEecCceEEEEeec
Confidence 9999999999999986
No 39
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=8.6e-38 Score=278.47 Aligned_cols=304 Identities=15% Similarity=0.203 Sum_probs=224.3
Q ss_pred cccccccCcceeEEEEccCCCEE-EEeeC---CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccC---CCeEEEE
Q 013578 84 VNTLKGHGDSVTGLCFSSDGKCL-ATACA---DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADN---ATSIVVA 156 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg~~l-~t~s~---dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~---~~~l~~~ 156 (440)
.+.+.+|.+.|++++|+|++..+ ++|+. ||.|++|++.++.... ....+|...|.+++|+|+ +.+++++
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 86 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL----LREIEKAKPIKCGTFGATSLQQRYLATG 86 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE----EEEEEESSCEEEEECTTCCTTTCCEEEE
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc----eeeecccCcEEEEEEcCCCCCCceEEEe
Confidence 45668899999999999999655 56665 9999999998765321 222356789999999999 6899998
Q ss_pred eecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeC
Q 013578 157 THNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHG 236 (440)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~ 236 (440)
+.+ ..+.+|+...... ....+ ..+... +..........++++++ ++++++.|+.|++||+
T Consensus 87 ~~d---g~i~iwd~~~~~~------------~~~~~---~~~~~~-v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~ 146 (357)
T 3i2n_A 87 DFG---GNLHIWNLEAPEM------------PVYSV---KGHKEI-INAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDP 146 (357)
T ss_dssp ETT---SCEEEECTTSCSS------------CSEEE---CCCSSC-EEEEEEESGGGCC-CCC-EEEEEETTSCEEEECT
T ss_pred cCC---CeEEEEeCCCCCc------------cEEEE---Eecccc-eEEEeeccccccCCCcc-EEEEEeCCCeEEEEeC
Confidence 877 5677777654320 00111 112111 11122222234577887 8999999999999999
Q ss_pred CCCc-eeeeeeCCCC----cccEEE----ecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEE
Q 013578 237 KTGK-LLGNVDTNQL----KNNMAA----ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF 307 (440)
Q Consensus 237 ~~~~-~~~~~~~~~~----~v~~~~----~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 307 (440)
.+++ .+..+..+.. .+.+++ |+|++++|++++.||.|++||++... ......|...|.+++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---------~~~~~~~~~~v~~~~~ 217 (357)
T 3i2n_A 147 RQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA---------LRWETNIKNGVCSLEF 217 (357)
T ss_dssp TSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE---------EEEEEECSSCEEEEEE
T ss_pred CCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc---------eeeecCCCCceEEEEc
Confidence 9887 6677765444 677887 78999999999999999999986553 2334668899999999
Q ss_pred cC---CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEec-CCEEEEEE
Q 013578 308 AP---NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATH-GSTLQWLS 382 (440)
Q Consensus 308 ~p---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~-~~~i~i~d 382 (440)
+| ++.+|++++.||.|++||+++...... + ......++...|.+++|+|+++ +|++++ |+.|++||
T Consensus 218 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 288 (357)
T 3i2n_A 218 DRKDISMNKLVATSLEGKFHVFDMRTQHPTKG-------F--ASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWK 288 (357)
T ss_dssp SCSSSSCCEEEEEESTTEEEEEEEEEEETTTE-------E--EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred CCCCCCCCEEEEECCCCeEEEEeCcCCCcccc-------e--eeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEee
Confidence 99 999999999999999999987543211 0 0111224566799999999998 677765 89999999
Q ss_pred cCCcc-------------------chhhhhccccCCeEEEEecCCCCCCCCCcceEEE-EeeCCCeEEEEeCCCCC
Q 013578 383 VETGK-------------------VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLA-TSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 383 ~~~~~-------------------~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~-t~~~Dg~i~vw~~~~~~ 438 (440)
+.++. .+..+ .+|.+.|++++|+|++ .+|+ +++.||.|++|++.+.+
T Consensus 289 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~--------~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 289 YEYPIQRSKKDSEGIEMGVAGSVSLLQNV-TLSTQPISSLDWSPDK--------RGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EECCSCC--CCTTSCCCCCCCEEEEEEEE-ECCSSCEEEEEECSSS--------TTEEEEEETTSEEEEEEECC--
T ss_pred cCCCcccccccCCCCccccccccceeecc-ccCCCCeeEEEEcCCC--------CeEEEEecCCCcEEEEECCCcc
Confidence 98653 33444 5799999999999998 7787 89999999999998765
No 40
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-37 Score=279.37 Aligned_cols=259 Identities=22% Similarity=0.314 Sum_probs=211.6
Q ss_pred ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
.+..+.+|.+.|++++|+|++++|++|+.||.|+||++..... ........|...|.+++|+++.
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~------------ 67 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH---KLIDTLTGHEGPVWRVDWAHPK------------ 67 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE---EEEEEECCCSSCEEEEEECCGG------------
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc---eeeeEecCCCCcEEEEEeCCCC------------
Confidence 4577899999999999999999999999999999999975432 2445566788899999998651
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc--
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK-- 240 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-- 240 (440)
++. +|++++.|+.|++||+.+++
T Consensus 68 ------------------------------------------------------~~~-~l~s~~~dg~v~iwd~~~~~~~ 92 (379)
T 3jrp_A 68 ------------------------------------------------------FGT-ILASCSYDGKVLIWKEENGRWS 92 (379)
T ss_dssp ------------------------------------------------------GCS-EEEEEETTSCEEEEEEETTEEE
T ss_pred ------------------------------------------------------CCC-EEEEeccCCEEEEEEcCCCcee
Confidence 111 78899999999999999887
Q ss_pred eeeeeeCCCCcccEEEecCC--CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC---------
Q 013578 241 LLGNVDTNQLKNNMAAISPN--GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP--------- 309 (440)
Q Consensus 241 ~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p--------- 309 (440)
.+..+..|...+.+++|+|+ +++|++++.||.|++||++.... .....+.+|...|.+++|+|
T Consensus 93 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 166 (379)
T 3jrp_A 93 QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT------TSPIIIDAHAIGVNSASWAPATIEEDGEH 166 (379)
T ss_dssp EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC------CCEEEEECCTTCEEEEEECCCC-------
T ss_pred EeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc------eeeEEecCCCCceEEEEEcCccccccccc
Confidence 67777888999999999999 99999999999999999976531 13345678999999999999
Q ss_pred ----CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC---CCEEEEec-CCEEEEE
Q 013578 310 ----NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD---GKILAATH-GSTLQWL 381 (440)
Q Consensus 310 ----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~~-~~~i~i~ 381 (440)
++.+|++++.|+.|++||+++..... .......+|...|.+++|+|+ +.+|++++ |+.|++|
T Consensus 167 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----------~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iw 236 (379)
T 3jrp_A 167 NGTKESRKFVTGGADNLVKIWKYNSDAQTY----------VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236 (379)
T ss_dssp ---CTTCEEEEEETTSCEEEEEEETTTTEE----------EEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred cCCCCCCEEEEEeCCCeEEEEEecCCCcce----------eeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence 69999999999999999998543210 011223356677999999999 88888866 8999999
Q ss_pred EcCCcc-----chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 382 SVETGK-----VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 382 d~~~~~-----~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
|+.+++ .+... ..|...|++++|+|++ .+|++++.||.|++|++..
T Consensus 237 d~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g--------~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 237 TQDNEQGPWKKTLLKE-EKFPDVLWRASWSLSG--------NVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp EESSTTSCCEEEESSS-SCCSSCEEEEEECSSS--------CCEEEEESSSSEEEEEEEE
T ss_pred eCCCCCccceeeeecc-ccCCCcEEEEEEcCCC--------CEEEEecCCCcEEEEeCCC
Confidence 999874 22222 3588899999999998 8999999999999999873
No 41
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3e-37 Score=273.98 Aligned_cols=264 Identities=18% Similarity=0.263 Sum_probs=211.4
Q ss_pred cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccC--CCeEEEEeecCC
Q 013578 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADN--ATSIVVATHNLS 161 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~--~~~l~~~~~~~~ 161 (440)
...+.+|.+.|++++|+|++++|++|+.||.|++||+.++... .........|...|.+++|+|. +.
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~d~~---------- 72 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN-WELSDSWRAHDSSIVAIDWASPEYGR---------- 72 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC-EEEEEEEECCSSCEEEEEECCGGGCS----------
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc-ceecceeccCCCcEEEEEEcCCCCCC----------
Confidence 4567899999999999999999999999999999999875432 2334455578889999999873 33
Q ss_pred cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC--
Q 013578 162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG-- 239 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-- 239 (440)
+|++++.|+.|++||+.++
T Consensus 73 -----------------------------------------------------------~l~s~~~dg~v~vwd~~~~~~ 93 (351)
T 3f3f_A 73 -----------------------------------------------------------IIASASYDKTVKLWEEDPDQE 93 (351)
T ss_dssp -----------------------------------------------------------EEEEEETTSCEEEEEECTTSC
T ss_pred -----------------------------------------------------------EEEEEcCCCeEEEEecCCCcc
Confidence 7888899999999999877
Q ss_pred -------ceeeeeeCCCCcccEEEecCC--CCeEEEEecCCCEEEEEeEecCCCceeeee-e----eeeeeccccceEEE
Q 013578 240 -------KLLGNVDTNQLKNNMAAISPN--GRFLAAAAFTADVKVWEIVYSKDGLVKAVT-S----VMQLKGHKSAVTWL 305 (440)
Q Consensus 240 -------~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~----~~~~~~h~~~v~~~ 305 (440)
+.+..+..|...+.+++|+|+ +++|++++.||.|++||++........... . .....+|...+.++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (351)
T 3f3f_A 94 ECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCL 173 (351)
T ss_dssp TTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEE
T ss_pred cccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEE
Confidence 557778889999999999999 999999999999999999766532211110 0 01122678899999
Q ss_pred EEcCC---CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC----CEEEEec-CCE
Q 013578 306 CFAPN---SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG----KILAATH-GST 377 (440)
Q Consensus 306 ~~~p~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g----~~l~~~~-~~~ 377 (440)
+|+|+ +.+|++++.|+.+.+|+....... ......+|...|.+++|+|++ ++|++++ |+.
T Consensus 174 ~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~------------~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~ 241 (351)
T 3f3f_A 174 SWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH------------VAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR 241 (351)
T ss_dssp EECCCSSSCCEEEEEETTEEEEEEECTTSCEE------------EEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC
T ss_pred EeccCCCCCcEEEEecCCCcEEEEccCCCcee------------eeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe
Confidence 99997 899999999999988877643210 122334567789999999998 7888765 899
Q ss_pred EEEEEcCCc----------------------------------------------cchhhhhccccCCeEEEEecCCCCC
Q 013578 378 LQWLSVETG----------------------------------------------KVLDTAEKAHEGEITCMAWAPKTIP 411 (440)
Q Consensus 378 i~i~d~~~~----------------------------------------------~~~~~~~~~h~~~v~~v~~~~~~~~ 411 (440)
|++||+.++ +.+..+ .+|.+.|++++|+|++
T Consensus 242 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~-- 318 (351)
T 3f3f_A 242 IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH-DDHNGEVWSVSWNLTG-- 318 (351)
T ss_dssp EEEEEEEECC---------------------------------------CCSEEEEEEEEE-CTTSSCEEEEEECSSS--
T ss_pred EEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE-ecccccEEEEEEcCCC--
Confidence 999999875 344444 5799999999999998
Q ss_pred CCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 412 MGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 412 ~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
.+|++|+.||.|++|++.+++
T Consensus 319 ------~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 319 ------TILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp ------CCEEEEETTSCEEEEEECTTS
T ss_pred ------CEEEEecCCCcEEEEecCcCc
Confidence 899999999999999998764
No 42
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=7.7e-38 Score=283.14 Aligned_cols=263 Identities=21% Similarity=0.338 Sum_probs=215.3
Q ss_pred CCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCc
Q 013578 67 SHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPT 142 (440)
Q Consensus 67 ~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~ 142 (440)
...+++.|+.+++|.. ..+++.+|.+.|++++|+|+|++|++|+.||+|++||+.+.. ......+|...|.
T Consensus 122 ~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~-----~~~~~~~h~~~V~ 196 (410)
T 1vyh_C 122 VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE-----CIRTMHGHDHNVS 196 (410)
T ss_dssp EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC-----EEECCCCCSSCEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----eeEEEcCCCCCEE
Confidence 3456677888888865 467899999999999999999999999999999999997654 4556678889999
Q ss_pred eEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEE
Q 013578 143 AVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTII 222 (440)
Q Consensus 143 ~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 222 (440)
+++|+|++.++++++.| ..+.+|+......... ...|...+ ..+.+++++. ++
T Consensus 197 ~v~~~p~~~~l~s~s~D---~~i~~wd~~~~~~~~~----------------~~~h~~~v-------~~~~~~~~g~-~l 249 (410)
T 1vyh_C 197 SVSIMPNGDHIVSASRD---KTIKMWEVQTGYCVKT----------------FTGHREWV-------RMVRPNQDGT-LI 249 (410)
T ss_dssp EEEECSSSSEEEEEETT---SEEEEEETTTCCEEEE----------------EECCSSCE-------EEEEECTTSS-EE
T ss_pred EEEEeCCCCEEEEEeCC---CeEEEEECCCCcEEEE----------------EeCCCccE-------EEEEECCCCC-EE
Confidence 99999999999999887 5777887654321100 01111111 1223467777 99
Q ss_pred EEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCC--------------------CCeEEEEecCCCEEEEEeEecC
Q 013578 223 ASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPN--------------------GRFLAAAAFTADVKVWEIVYSK 282 (440)
Q Consensus 223 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~--------------------~~~l~~~~~dg~i~i~d~~~~~ 282 (440)
++|+.|++|++||+.++++...+..|...+.+++|+|+ +.+|++|+.|+.|++||++.+.
T Consensus 250 ~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~ 329 (410)
T 1vyh_C 250 ASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329 (410)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred EEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 99999999999999999999999999999999999996 6789999999999999997654
Q ss_pred CCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEE
Q 013578 283 DGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS 362 (440)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 362 (440)
.+..+.+|...|.+++|+|++++|++++.|++|++||++++.++. ...+|...|.+++
T Consensus 330 --------~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~--------------~~~~h~~~v~~l~ 387 (410)
T 1vyh_C 330 --------CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK--------------TLNAHEHFVTSLD 387 (410)
T ss_dssp --------EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCE--------------EEECCSSCEEEEE
T ss_pred --------eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE--------------EEcCCCCcEEEEE
Confidence 677888999999999999999999999999999999998654321 1235566799999
Q ss_pred eCCCCCEEEEec-CCEEEEEEc
Q 013578 363 LSSDGKILAATH-GSTLQWLSV 383 (440)
Q Consensus 363 ~s~~g~~l~~~~-~~~i~i~d~ 383 (440)
|+|++.+|++|+ |+.|++|+.
T Consensus 388 ~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 388 FHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ECSSSSCEEEEETTSEEEEEC-
T ss_pred EcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999876 999999986
No 43
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-36 Score=275.01 Aligned_cols=294 Identities=16% Similarity=0.178 Sum_probs=221.1
Q ss_pred cccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578 82 LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS 161 (440)
Q Consensus 82 ~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~ 161 (440)
..+....+|...+.+.++++++..+++++.||.|++|++.++... ......|...|.+++|+|+++++++++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~----~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-- 155 (401)
T 4aez_A 82 ERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVS----ALAETDESTYVASVKWSHDGSFLSVGLGN-- 155 (401)
T ss_dssp SEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEE----EEEECCTTCCEEEEEECTTSSEEEEEETT--
T ss_pred ceeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEe----EeeecCCCCCEEEEEECCCCCEEEEECCC--
Confidence 344455588776544333334566889999999999999876532 22333477899999999999999999877
Q ss_pred cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCC-CCc
Q 013578 162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK-TGK 240 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~ 240 (440)
..+.+|+......... ...+...+... .+ ++. ++++++.|+.|++||++ .+.
T Consensus 156 -g~i~iwd~~~~~~~~~----------------~~~~~~~v~~~-------~~--~~~-~l~~~~~dg~i~i~d~~~~~~ 208 (401)
T 4aez_A 156 -GLVDIYDVESQTKLRT----------------MAGHQARVGCL-------SW--NRH-VLSSGSRSGAIHHHDVRIANH 208 (401)
T ss_dssp -SCEEEEETTTCCEEEE----------------ECCCSSCEEEE-------EE--ETT-EEEEEETTSEEEEEETTSSSC
T ss_pred -CeEEEEECcCCeEEEE----------------ecCCCCceEEE-------EE--CCC-EEEEEcCCCCEEEEecccCcc
Confidence 4677776544311110 01111111111 11 334 89999999999999998 566
Q ss_pred eeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCC-EEEEEe-
Q 013578 241 LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSE-QIITAS- 318 (440)
Q Consensus 241 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~~- 318 (440)
.+..+..|...+.+++|+|++++|++|+.||.|++||++... ....+.+|...|.+++|+|++. ++++++
T Consensus 209 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~--------~~~~~~~~~~~v~~~~~~p~~~~ll~~~~g 280 (401)
T 4aez_A 209 QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI--------PKFTKTNHNAAVKAVAWCPWQSNLLATGGG 280 (401)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS--------EEEEECCCSSCCCEEEECTTSTTEEEEECC
T ss_pred eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC--------ccEEecCCcceEEEEEECCCCCCEEEEecC
Confidence 778888999999999999999999999999999999997654 5667888999999999999775 555654
Q ss_pred -CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE--e-cCCEEEEEEcCCccchhhh-h
Q 013578 319 -KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA--T-HGSTLQWLSVETGKVLDTA-E 393 (440)
Q Consensus 319 -~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--~-~~~~i~i~d~~~~~~~~~~-~ 393 (440)
.|+.|++||++++..+.. + .+...+.+++|+|+++++++ | .++.|++||+.+++..... .
T Consensus 281 s~d~~i~i~d~~~~~~~~~-------~--------~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~ 345 (401)
T 4aez_A 281 TMDKQIHFWNAATGARVNT-------V--------DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI 345 (401)
T ss_dssp TTTCEEEEEETTTCCEEEE-------E--------ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEEECCCCCEEEE-------E--------eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEe
Confidence 799999999987644321 1 12235889999999999988 4 3899999999987654432 1
Q ss_pred ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 394 KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 394 ~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
.+|.+.|.+++|+|++ .+|++++.||.|++|++.+++.
T Consensus 346 ~~h~~~v~~~~~s~dg--------~~l~s~~~dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 346 PAHDTRVLYSALSPDG--------RILSTAASDENLKFWRVYDGDH 383 (401)
T ss_dssp ECCSSCCCEEEECTTS--------SEEEEECTTSEEEEEECCC---
T ss_pred cCCCCCEEEEEECCCC--------CEEEEEeCCCcEEEEECCCCcc
Confidence 5899999999999998 8999999999999999988753
No 44
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-38 Score=288.67 Aligned_cols=321 Identities=14% Similarity=0.081 Sum_probs=217.1
Q ss_pred CCCCCCCCCCcccCcccc--------ccccccCcceeEEEEccC------CCEEEEeeCCCcEEEEecCCCCCcc-----
Q 013578 67 SHSHGDKDQNKRHHPLDV--------NTLKGHGDSVTGLCFSSD------GKCLATACADGVIRVHKLDDASSKS----- 127 (440)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~--------~~l~~H~~~V~~l~~s~d------g~~l~t~s~dg~v~vW~~~~~~~~~----- 127 (440)
..++++.|+.+++|.... .++.+|.+.|++++|+|+ +.+||+|+.||+|+|||+..+....
T Consensus 175 ~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~ 254 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM 254 (524)
T ss_dssp -------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred hhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence 346677888888886532 236678899999999997 5799999999999999998664221
Q ss_pred -eeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEe
Q 013578 128 -FKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTL 206 (440)
Q Consensus 128 -~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (440)
.........|...|.+++|++++ .|++++.| ..+.+|+...... +...+ ..|...+....
T Consensus 255 ~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~D---gtV~lWD~~~~~~------------~~~~~---~~H~~~V~sv~ 315 (524)
T 2j04_B 255 CEKPSLTLSLADSLITTFDFLSPT-TVVCGFKN---GFVAEFDLTDPEV------------PSFYD---QVHDSYILSVS 315 (524)
T ss_dssp CCSCSEEECCTTTCEEEEEESSSS-EEEEEETT---SEEEEEETTBCSS------------CSEEE---ECSSSCEEEEE
T ss_pred ecCceEEEEcCCCCEEEEEecCCC-eEEEEeCC---CEEEEEECCCCCC------------ceEEe---ecccccEEEEE
Confidence 01112345678899999999864 78888877 5777887654210 00001 11222111110
Q ss_pred ecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCC--cccEEEecCCCCeEEEEecCCCEEEEEeEecCCC
Q 013578 207 FGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQL--KNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDG 284 (440)
Q Consensus 207 ~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~ 284 (440)
..+++++..+|++++.|++|++||++++++...+..|.. .+.+++|+|+++.|++++.|++|++||++...
T Consensus 316 -----~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~-- 388 (524)
T 2j04_B 316 -----TAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF-- 388 (524)
T ss_dssp -----EECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT--
T ss_pred -----EEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc--
Confidence 123566634999999999999999998877666655542 47899999999999999999999999997655
Q ss_pred ceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeC
Q 013578 285 LVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLS 364 (440)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 364 (440)
++..+.+|.+.|++++|+|++++|++|+.|++|++||+..+ .+.. .. ..........+..++|+
T Consensus 389 ------~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~----~~-----~~~~~~~~~~v~~v~~s 452 (524)
T 2j04_B 389 ------AVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHG----IK-----NSSATQKSLRLWKWDYS 452 (524)
T ss_dssp ------CCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTC----C-----------CCCCEEEECBCC
T ss_pred ------cceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccc----cc-----cCccceeeeEEEEeccC
Confidence 55678889999999999999999999999999999998643 1100 00 00000112346789999
Q ss_pred CCCCEEEEecCCEEEEEEcC-CccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 365 SDGKILAATHGSTLQWLSVE-TGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 365 ~~g~~l~~~~~~~i~i~d~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
|++..+...++ ..+|+.. ++..+..+ .+|...|.+|+|+|++ .....|++|+.||.||||++...
T Consensus 453 p~g~~~~~~~~--~~~~~~~~~g~~~~~l-~gh~~~V~~Vafsp~~-----~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 453 IKDDKYRIDSS--YEVYPLTVNDVSKAKI-DAHGINITCTKWNETS-----AGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp SSSCEEEECCC--CCCCC--------------CCCSCCCEEECCST-----TTTTEEEEECTTSEEEEEECSCC
T ss_pred CCCCeEEccCC--ceecccccCCcceeee-cCCCceEEEEECCCCC-----CccHHHHhhccCceEEEEEcccc
Confidence 99996643222 3334332 46666677 5899999999999996 11258999999999999998753
No 45
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.2e-36 Score=265.99 Aligned_cols=269 Identities=12% Similarity=0.166 Sum_probs=189.1
Q ss_pred EEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecc
Q 013578 115 IRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEH 194 (440)
Q Consensus 115 v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (440)
.+.|++..... ..+...|.+++|+|||+.|++++.. .+++|+............ .
T Consensus 16 ~r~w~~~~~~~---------~~~~~~v~~~~fs~dG~~l~~~sd~----~~r~Wd~~~~~~~~~~~~------------~ 70 (344)
T 4gqb_B 16 AREWNLPPNAP---------ACMERQLEAARYRSDGALLLGASSL----SGRCWAGSLWLFKDPCAA------------P 70 (344)
T ss_dssp -------CCSC---------SSCCSEEEEEEECTTSCEEEEEECC----SSSCCCEEEEEESSGGGT------------T
T ss_pred ccccCCCCCCc---------ccccCCEEEEEECCCCCEEEEEeCC----ceEEeeceeeeecccccc------------C
Confidence 46777654321 2244678999999999998877632 223333211100000000 0
Q ss_pred cccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeee----eeCCCCcccEEEecCCCCeEEEEecC
Q 013578 195 HKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN----VDTNQLKNNMAAISPNGRFLAAAAFT 270 (440)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~d 270 (440)
.................+.+++++ .+++++.||+|++||+.+++.+.. +.+|...|.+++|+|+|++|++|+.|
T Consensus 71 ~~~~~~~~~~~~~~v~~~~~s~d~--~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d 148 (344)
T 4gqb_B 71 NEGFCSAGVQTEAGVADLTWVGER--GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD 148 (344)
T ss_dssp CGGGCSEEEEESSCEEEEEEETTT--EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred CcceeeeeeccCCCEEEEEEeCCC--eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC
Confidence 000111111122223344556765 688999999999999998876543 34789999999999999999999999
Q ss_pred CCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCC-EEEEEeCCCcEEEEecCccccccCCCCcccccccccc
Q 013578 271 ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSE-QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLL 349 (440)
Q Consensus 271 g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 349 (440)
+.|++||+..++ .+..+.+|...|.+++|+|++. +|++++.|++|++||+++++.... .
T Consensus 149 ~~i~iwd~~~~~--------~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~------------~ 208 (344)
T 4gqb_B 149 ICIKVWDLAQQV--------VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ------------I 208 (344)
T ss_dssp SCEEEEETTTTE--------EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE------------C
T ss_pred CeEEEEECCCCc--------EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeee------------e
Confidence 999999997654 6788999999999999999885 789999999999999987654321 1
Q ss_pred CCCCCeeeeeeEEeCCC-CCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCC
Q 013578 350 DSNGATLQYDRLSLSSD-GKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDK 427 (440)
Q Consensus 350 ~~~~~~~~v~~~~~s~~-g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg 427 (440)
....+...+.+++|+|+ +++|++|+ |+.|++||+++++++..+ .+|...|++++|+|++. .+|++|+.|+
T Consensus 209 ~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~-~~h~~~v~~v~fsp~g~-------~~lasgs~D~ 280 (344)
T 4gqb_B 209 GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS-AVHSQCVTGLVFSPHSV-------PFLASLSEDC 280 (344)
T ss_dssp C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEE-ECCSSCEEEEEECSSSS-------CCEEEEETTS
T ss_pred ecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEE-cCCCCCEEEEEEccCCC-------eEEEEEeCCC
Confidence 11233345788999995 56777765 899999999999999988 59999999999999861 5799999999
Q ss_pred eEEEEeCCCCC
Q 013578 428 KVKLWLAPSLE 438 (440)
Q Consensus 428 ~i~vw~~~~~~ 438 (440)
+|+|||+.+++
T Consensus 281 ~i~vwd~~~~~ 291 (344)
T 4gqb_B 281 SLAVLDSSLSE 291 (344)
T ss_dssp CEEEECTTCCE
T ss_pred eEEEEECCCCc
Confidence 99999998764
No 46
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-37 Score=283.12 Aligned_cols=295 Identities=18% Similarity=0.210 Sum_probs=226.9
Q ss_pred cCcceeEEEEccCCC-EEEEe----------eCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEee
Q 013578 90 HGDSVTGLCFSSDGK-CLATA----------CADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATH 158 (440)
Q Consensus 90 H~~~V~~l~~s~dg~-~l~t~----------s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~ 158 (440)
+...|.+++|+|+|+ +|++| +.|+.|+||++.++.... ......|...|.+++|+|++++|++++.
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 87 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEK---PIASLQVDSKFNDLDWSHNNKIIAGALD 87 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCS---CSCCCCCSSCEEEEEECSSSSCEEEEES
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCc---EEEEEecCCceEEEEECCCCCeEEEEcc
Confidence 456899999999997 99999 899999999998764220 1122357789999999999999999987
Q ss_pred cCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC
Q 013578 159 NLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT 238 (440)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 238 (440)
+ ..+.+|+......... .......|.. ....+.++|++..++++++.|+.|++||+.+
T Consensus 88 d---g~v~vw~~~~~~~~~~------------~~~~~~~h~~-------~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 145 (416)
T 2pm9_A 88 N---GSLELYSTNEANNAIN------------SMARFSNHSS-------SVKTVKFNAKQDNVLASGGNNGEIFIWDMNK 145 (416)
T ss_dssp S---SCEEEECCSSTTSCCC------------EEEECCCSSS-------CCCEEEECSSSTTBEEEECSSSCEEBCBTTT
T ss_pred C---CeEEEeeccccccccc------------chhhccCCcc-------ceEEEEEcCCCCCEEEEEcCCCeEEEEECCC
Confidence 7 4677777654210000 0000011111 1223445777344999999999999999998
Q ss_pred Cc------eee---eeeCCCCcccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc------ccce
Q 013578 239 GK------LLG---NVDTNQLKNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH------KSAV 302 (440)
Q Consensus 239 ~~------~~~---~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h------~~~v 302 (440)
++ ... .+..|...+.+++|+|+ +.+|++++.||.|++||++... .+..+..| ...|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--------~~~~~~~~~~~~~~~~~v 217 (416)
T 2pm9_A 146 CTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK--------EVIHLSYTSPNSGIKQQL 217 (416)
T ss_dssp TSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE--------EEEEECCCCCSSCCCCCE
T ss_pred CccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC--------cceEEeccccccccCCce
Confidence 76 332 23568889999999999 7899999999999999986654 44455544 7899
Q ss_pred EEEEEcCCC-CEEEEEeCCC---cEEEEecCccccccCCCCccccccccccCCC-CCeeeeeeEEeCC-CCCEEEEec-C
Q 013578 303 TWLCFAPNS-EQIITASKDG---TLRVWNINVRYHLDEDPKTLKVLPIPLLDSN-GATLQYDRLSLSS-DGKILAATH-G 375 (440)
Q Consensus 303 ~~~~~~p~~-~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~-~g~~l~~~~-~ 375 (440)
.+++|+|++ .+|++++.|+ .|++||+++.... ..... +|...|.+++|+| ++++|++++ |
T Consensus 218 ~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~-------------~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d 284 (416)
T 2pm9_A 218 SVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP-------------LQTLNQGHQKGILSLDWCHQDEHLLLSSGRD 284 (416)
T ss_dssp EEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC-------------SBCCCSCCSSCEEEEEECSSCSSCEEEEESS
T ss_pred EEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC-------------cEEeecCccCceeEEEeCCCCCCeEEEEeCC
Confidence 999999997 6899999998 9999999864211 11222 5667799999999 899888876 8
Q ss_pred CEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 376 STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 376 ~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
+.|++||+.+++.+..+ .+|...|++++|+|+++ .+|++++.||.|++|++.+.+
T Consensus 285 g~v~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~-------~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 285 NTVLLWNPESAEQLSQF-PARGNWCFKTKFAPEAP-------DLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp SEEEEECSSSCCEEEEE-ECSSSCCCCEEECTTCT-------TEEEECCSSSEEEEEESCCCC
T ss_pred CCEEEeeCCCCccceee-cCCCCceEEEEECCCCC-------CEEEEEecCCcEEEEEccCCC
Confidence 99999999999998888 58999999999999862 599999999999999998765
No 47
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.4e-36 Score=264.81 Aligned_cols=295 Identities=13% Similarity=0.171 Sum_probs=214.8
Q ss_pred CCCCCCCCCCCcccCcccc-------ccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCC
Q 013578 66 HSHSHGDKDQNKRHHPLDV-------NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG 138 (440)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~-------~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~ 138 (440)
...++++.|+.+++|...- ....+|.+.|++++|+|+|++|++|+.|++|++|++..... .......+|.
T Consensus 29 ~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~---~~~~~~~~h~ 105 (345)
T 3fm0_A 29 TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF---ECVTTLEGHE 105 (345)
T ss_dssp SCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E---EEEEEECCCS
T ss_pred CEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe---EEEEEccCCC
Confidence 3457778889999886532 22468999999999999999999999999999999976542 2445567888
Q ss_pred CCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCC
Q 013578 139 GPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADG 218 (440)
Q Consensus 139 ~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (440)
..|.+++|+|++++|++++.| ..+.+|+....... ........|... ...+.++|++
T Consensus 106 ~~v~~v~~sp~~~~l~s~s~D---~~v~iwd~~~~~~~-------------~~~~~~~~h~~~-------v~~~~~~p~~ 162 (345)
T 3fm0_A 106 NEVKSVAWAPSGNLLATCSRD---KSVWVWEVDEEDEY-------------ECVSVLNSHTQD-------VKHVVWHPSQ 162 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETT---SCEEEEEECTTSCE-------------EEEEEECCCCSC-------EEEEEECSSS
T ss_pred CCceEEEEeCCCCEEEEEECC---CeEEEEECCCCCCe-------------EEEEEecCcCCC-------eEEEEECCCC
Confidence 999999999999999999987 45667765432100 000011111111 1223457888
Q ss_pred CeEEEEeeCCceEEEEeCCCCc--eeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCc-------eeee
Q 013578 219 STIIASCSEGTDISIWHGKTGK--LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGL-------VKAV 289 (440)
Q Consensus 219 ~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~-------~~~~ 289 (440)
. +|++++.|+.|++||..+++ +...+..|...|.+++|+|++++|++|+.|++|++||........ ....
T Consensus 163 ~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~ 241 (345)
T 3fm0_A 163 E-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSW 241 (345)
T ss_dssp S-CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEE
T ss_pred C-EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcc
Confidence 7 89999999999999998775 456788899999999999999999999999999999986443211 1122
Q ss_pred eeeeeeec-cccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC
Q 013578 290 TSVMQLKG-HKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK 368 (440)
Q Consensus 290 ~~~~~~~~-h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 368 (440)
.++..+.+ |...|.+++|+|++..|++++.|+.|++|+.+....... ...........+|...|.+++|+|++.
T Consensus 242 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~-----~~~~~~~~~~~~h~~~V~~v~~~p~~~ 316 (345)
T 3fm0_A 242 KCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQ-----PTFSLTAHLHQAHSQDVNCVAWNPKEP 316 (345)
T ss_dssp EEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTS-----CCEEEEEEETTSSSSCEEEEEECSSST
T ss_pred ceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcce-----eeEEEEeeecccccCcEeEeEEeCCCc
Confidence 34445555 889999999999999999999999999999875432111 111111223346778899999999985
Q ss_pred -EEEEec-CCEEEEEEcCCccchhhh
Q 013578 369 -ILAATH-GSTLQWLSVETGKVLDTA 392 (440)
Q Consensus 369 -~l~~~~-~~~i~i~d~~~~~~~~~~ 392 (440)
+||+|+ |+.|++|+..+++.+...
T Consensus 317 ~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 317 GLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp TEEEEEETTSCEEEEEECC-------
T ss_pred eEEEEcCCCCcEEEEEecCCCCcccc
Confidence 888765 999999999998876554
No 48
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-36 Score=277.68 Aligned_cols=293 Identities=16% Similarity=0.208 Sum_probs=223.4
Q ss_pred cccccc--cCcceeEEEEccCCC-EEEEeeCCCcEEEEec----CCCCC-----cceeeEEecC------CCCCCCceEE
Q 013578 84 VNTLKG--HGDSVTGLCFSSDGK-CLATACADGVIRVHKL----DDASS-----KSFKFLRINL------PPGGPPTAVA 145 (440)
Q Consensus 84 ~~~l~~--H~~~V~~l~~s~dg~-~l~t~s~dg~v~vW~~----~~~~~-----~~~~~~~~~~------~~~~~v~~v~ 145 (440)
...+.. |.+.|++++|+|+|+ +||+|+.||.|++|++ .++.. .......... .|...|.+++
T Consensus 36 ~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (425)
T 1r5m_A 36 VKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLA 115 (425)
T ss_dssp CEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEE
T ss_pred hhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEE
Confidence 344444 569999999999999 9999999999999999 76542 1111111111 1466899999
Q ss_pred EccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEe
Q 013578 146 FADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASC 225 (440)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 225 (440)
|+|++++|++++.+ ..+.+|+...... .....+... ...+.++++++ +++++
T Consensus 116 ~s~~~~~l~~~~~d---g~i~i~~~~~~~~-----------------~~~~~~~~~-------v~~~~~~~~~~-~l~~~ 167 (425)
T 1r5m_A 116 WSHDGNSIVTGVEN---GELRLWNKTGALL-----------------NVLNFHRAP-------IVSVKWNKDGT-HIISM 167 (425)
T ss_dssp ECTTSSEEEEEETT---SCEEEEETTSCEE-----------------EEECCCCSC-------EEEEEECTTSS-EEEEE
T ss_pred EcCCCCEEEEEeCC---CeEEEEeCCCCee-----------------eeccCCCcc-------EEEEEECCCCC-EEEEE
Confidence 99999999999877 4566665221100 000111111 22234477888 89999
Q ss_pred eCCceEEEEeCCCCceeeeeeCCCCc---------------ccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeee
Q 013578 226 SEGTDISIWHGKTGKLLGNVDTNQLK---------------NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVT 290 (440)
Q Consensus 226 ~~d~~i~vwd~~~~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 290 (440)
+.|+.|++||+.+++.+..+..+... +.+++|++++ .+++++.+|.|++||+....
T Consensus 168 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~-------- 238 (425)
T 1r5m_A 168 DVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKT-------- 238 (425)
T ss_dssp ETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSS--------
T ss_pred ecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCc--------
Confidence 99999999999999998888877666 8999999975 58888999999999997654
Q ss_pred eeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEE
Q 013578 291 SVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKIL 370 (440)
Q Consensus 291 ~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 370 (440)
....+.+|...|.+++|+|++++|++++.|+.|++||+++..... ....+...+.+++|+|++ ++
T Consensus 239 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--------------~~~~~~~~i~~~~~~~~~-~l 303 (425)
T 1r5m_A 239 PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQN--------------CFYGHSQSIVSASWVGDD-KV 303 (425)
T ss_dssp CSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSE--------------EECCCSSCEEEEEEETTT-EE
T ss_pred eeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccce--------------EecCCCccEEEEEECCCC-EE
Confidence 566777899999999999999999999999999999998653321 112455678999999999 66
Q ss_pred EE-ecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 371 AA-THGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 371 ~~-~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
++ +.++.|++||+.+++.+..+ ..|...|.+++|+|++ .+|++++.||.|++|++.++
T Consensus 304 ~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~i~~~~~s~~~--------~~l~~~~~dg~i~i~~~~~~ 362 (425)
T 1r5m_A 304 ISCSMDGSVRLWSLKQNTLLALS-IVDGVPIFAGRISQDG--------QKYAVAFMDGQVNVYDLKKL 362 (425)
T ss_dssp EEEETTSEEEEEETTTTEEEEEE-ECTTCCEEEEEECTTS--------SEEEEEETTSCEEEEECHHH
T ss_pred EEEeCCCcEEEEECCCCcEeEec-ccCCccEEEEEEcCCC--------CEEEEEECCCeEEEEECCCC
Confidence 65 45999999999999988887 5899999999999998 89999999999999998754
No 49
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.7e-36 Score=269.03 Aligned_cols=284 Identities=14% Similarity=0.181 Sum_probs=187.5
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC---cceEEeecccc
Q 013578 96 GLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS---GCSLYMYGEEK 172 (440)
Q Consensus 96 ~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~---~~~~~~~~~~~ 172 (440)
.+.+.+++.++ .++.+.....|++.... ...|...|.+++|+|||++|++++.+.. ...+++|+...
T Consensus 10 g~d~g~~~~~~-~~~g~~~~~~w~~p~~~---------p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~ 79 (357)
T 4g56_B 10 GVDLGTENLYF-QSNGSSKGSAWGRPVTA---------PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPE 79 (357)
T ss_dssp ----------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC
T ss_pred CCCCCccceEE-ecCCCccccccCCCCCC---------cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCC
Confidence 44555555454 44456778999886432 2357788999999999999999987632 23456665443
Q ss_pred ccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee----eeeCC
Q 013578 173 AISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG----NVDTN 248 (440)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~----~~~~~ 248 (440)
....... .............+.++|++. +++++.|++|++||+.+++... ....|
T Consensus 80 ~~~~~~~-------------------~~~~~~~~~~V~~~~~s~d~~--~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h 138 (357)
T 4g56_B 80 GAPNESL-------------------CTAGVQTEAGVTDVAWVSEKG--ILVASDSGAVELWEILEKESLLVNKFAKYEH 138 (357)
T ss_dssp ---CGGG-------------------CSEEEECSSCEEEEEEETTTE--EEEEETTSCEEEC--------CCCCEEECCC
T ss_pred CCcceeE-------------------ecccCCCCCCEEEEEEcCCCC--EEEEECCCEEEEeeccccceeEEEeeccCCC
Confidence 3111000 000011111223344577764 6678889999999999876543 23468
Q ss_pred CCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCC-EEEEEeCCCcEEEEe
Q 013578 249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSE-QIITASKDGTLRVWN 327 (440)
Q Consensus 249 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~~~dg~i~iwd 327 (440)
...|.+++|+|++++|++|+.|+.|++||+..++ .+..+.+|...|++++|+|++. ++++++.|++|++||
T Consensus 139 ~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~--------~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd 210 (357)
T 4g56_B 139 DDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA--------VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210 (357)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE--------EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECC
T ss_pred CCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc--------EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEE
Confidence 8899999999999999999999999999987654 6778899999999999999875 789999999999999
Q ss_pred cCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC-CEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEe
Q 013578 328 INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG-KILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAW 405 (440)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~ 405 (440)
++++..... .....+...+.+++|+|++ .+|++|+ |+.|++||+.+++.+..+ .+|...|++++|
T Consensus 211 ~~~~~~~~~------------~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~l~~ 277 (357)
T 4g56_B 211 TRKPKPATR------------IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS-AVHSQNITGLAY 277 (357)
T ss_dssp TTSSSCBCB------------CCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE-CCCSSCEEEEEE
T ss_pred CCCCceeee------------eeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE-eccceeEEEEEE
Confidence 987644321 1222344568899999985 5777765 899999999999998888 589999999999
Q ss_pred cCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 406 APKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 406 ~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
+|++. ++|++|+.||+|+|||+++++
T Consensus 278 sp~~~-------~~lasgs~D~~i~iwd~~~~~ 303 (357)
T 4g56_B 278 SYHSS-------PFLASISEDCTVAVLDADFSE 303 (357)
T ss_dssp CSSSS-------CCEEEEETTSCEEEECTTSCE
T ss_pred cCCCC-------CEEEEEeCCCEEEEEECCCCc
Confidence 99862 589999999999999998765
No 50
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=6.4e-36 Score=271.93 Aligned_cols=284 Identities=18% Similarity=0.233 Sum_probs=218.5
Q ss_pred ceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccc
Q 013578 93 SVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEK 172 (440)
Q Consensus 93 ~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 172 (440)
.++.|+||++ ++||+|. |++|+|||..+++.. .......|...|++|+|+|++++|++++.+ ..+.+|+...
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~---~~~~~~~~~~~V~sv~fspdg~~lasgs~D---g~v~iWd~~~ 178 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL---QLLQMEQPGEYISSVAWIKEGNYLAVGTSS---AEVQLWDVQQ 178 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE---EEEECCSTTCCEEEEEECTTSSEEEEEETT---SCEEEEETTT
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE---EEEEecCCCCcEEEEEECCCCCEEEEEECC---CeEEEEEcCC
Confidence 4788999975 5777765 999999999987532 122334677889999999999999999887 4677777654
Q ss_pred ccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC-ceeeeeeCCCCc
Q 013578 173 AISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG-KLLGNVDTNQLK 251 (440)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~ 251 (440)
...... ...|...... +..++. ++++|+.|+.+++||.... ..+..+..|...
T Consensus 179 ~~~~~~----------------~~~h~~~v~~---------~s~~~~-~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~ 232 (420)
T 4gga_A 179 QKRLRN----------------MTSHSARVGS---------LSWNSY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE 232 (420)
T ss_dssp TEEEEE----------------ECCCSSCEEE---------EEEETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSC
T ss_pred CcEEEE----------------EeCCCCceEE---------EeeCCC-EEEEEeCCCceeEeeecccceeeEEecccccc
Confidence 321111 1111111111 123444 8999999999999998864 456778899999
Q ss_pred ccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCC-EEEE--EeCCCcEEEEec
Q 013578 252 NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSE-QIIT--ASKDGTLRVWNI 328 (440)
Q Consensus 252 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s--~~~dg~i~iwd~ 328 (440)
+..+.++|+++++++++.|+.+++|+...+.. ....+.....|...|.+++|+|.+. .+++ |+.|++|++||+
T Consensus 233 ~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~----~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~ 308 (420)
T 4gga_A 233 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG----GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308 (420)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEESSCCSS----CSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEET
T ss_pred eeeeeecCCCCeeeeeeccccceEEeeccccc----cceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeC
Confidence 99999999999999999999999999876542 1124556778999999999999665 4554 357999999999
Q ss_pred CccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe---cCCEEEEEEcCCccchhhhhccccCCeEEEEe
Q 013578 329 NVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT---HGSTLQWLSVETGKVLDTAEKAHEGEITCMAW 405 (440)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~---~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~ 405 (440)
+++.+.... .....+.++.|+++++.++++ .|+.|++||..+++++..+ .+|.+.|++++|
T Consensus 309 ~t~~~~~~~---------------~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l-~gH~~~V~~l~~ 372 (420)
T 4gga_A 309 CSGACLSAV---------------DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL-KGHTSRVLSLTM 372 (420)
T ss_dssp TTTEEEEEE---------------ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE-CCCSSCEEEEEE
T ss_pred Cccccceee---------------ccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE-cCCCCCEEEEEE
Confidence 977543210 112347789999999988764 3799999999999999998 599999999999
Q ss_pred cCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 406 APKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 406 ~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
+|++ .+|+||+.|++|+|||+....
T Consensus 373 spdg--------~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 373 SPDG--------ATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp CTTS--------SCEEEEETTTEEEEECCSCSS
T ss_pred cCCC--------CEEEEEecCCeEEEEECCCCC
Confidence 9998 899999999999999997654
No 51
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=6.9e-36 Score=275.79 Aligned_cols=320 Identities=16% Similarity=0.212 Sum_probs=240.3
Q ss_pred CCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCc
Q 013578 67 SHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPT 142 (440)
Q Consensus 67 ~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~ 142 (440)
...++..|+.++.|.. .+..+.+|.+.|++++|+|++ +|++|+.||+|++||+.++. .......|...|.
T Consensus 134 ~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~-----~~~~~~~h~~~v~ 207 (464)
T 3v7d_B 134 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC-----CTHVFEGHNSTVR 207 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEE
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc-----EEEEECCCCCccE
Confidence 4567788888988864 467788999999999999988 99999999999999998764 3455667889999
Q ss_pred eEEEc--cCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEee--cccccccCCCC
Q 013578 143 AVAFA--DNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLF--GASATYGTADG 218 (440)
Q Consensus 143 ~v~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 218 (440)
+++|+ +++.++++++.+ ..+.+|+............... ........... ........ .......++++
T Consensus 208 ~l~~~~~~~~~~l~s~s~d---~~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~ 280 (464)
T 3v7d_B 208 CLDIVEYKNIKYIVTGSRD---NTLHVWKLPKESSVPDHGEEHD---YPLVFHTPEEN-PYFVGVLRGHMASVRTVSGHG 280 (464)
T ss_dssp EEEEEESSSCEEEEEEETT---SCEEEEECCCCCCC------CC---SSEEESCGGGC-TTEEEEECCCSSCEEEEEEET
T ss_pred EEEEecCCCCCEEEEEcCC---CcEEEeeCCCCcccccccccCC---cceEeeccCCC-eEEEEEccCccceEEEEcCCC
Confidence 99999 577888888877 4667776654322111110000 00000000000 00000000 00111124556
Q ss_pred CeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc
Q 013578 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH 298 (440)
Q Consensus 219 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h 298 (440)
. ++++++.|+.|++||+.+++.+..+..|...+.+++|+|++++|++|+.||.|++||++.+. .+..+.+|
T Consensus 281 ~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~--------~~~~~~~h 351 (464)
T 3v7d_B 281 N-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE--------LMYTLQGH 351 (464)
T ss_dssp T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE--------EEEEECCC
T ss_pred C-EEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--------EEEEEeCC
Confidence 6 89999999999999999999999999999999999999999999999999999999987654 67788999
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEE
Q 013578 299 KSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTL 378 (440)
Q Consensus 299 ~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i 378 (440)
...|.+++|+ +.+|++++.||.|++||+++...... . .+...+..++|+++++++++|+++.|
T Consensus 352 ~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~-----------~----~~~~~~~~~~~~~~~~~l~~~~dg~i 414 (464)
T 3v7d_B 352 TALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS-----------Y----HHTNLSAITTFYVSDNILVSGSENQF 414 (464)
T ss_dssp SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE-----------E----ECTTCCCEEEEEECSSEEEEEETTEE
T ss_pred CCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeee-----------e----cCCCCccEEEEEeCCCEEEEecCCeE
Confidence 9999999997 57999999999999999986532210 0 11223567899999999999999999
Q ss_pred EEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578 379 QWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA 434 (440)
Q Consensus 379 ~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~ 434 (440)
++||+.+++.+......|.+.|.+++|+.+ .++++++.||.+.+|-+
T Consensus 415 ~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~---------~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 415 NIYNLRSGKLVHANILKDADQIWSVNFKGK---------TLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EEEETTTCCEEESCTTTTCSEEEEEEEETT---------EEEEEEEETTEEEEEEE
T ss_pred EEEECCCCcEEehhhccCCCcEEEEEecCC---------EEEEEEEeCCeEEEEEe
Confidence 999999999988754689999999999854 67778888887766643
No 52
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.6e-35 Score=281.82 Aligned_cols=314 Identities=16% Similarity=0.212 Sum_probs=245.3
Q ss_pred cccccccccCcc-eeEEEEcc--CCCEEEEeeCCCcEEEEecCCCCCc---ceeeEEecCCCCCCCceEEEccCCCeEEE
Q 013578 82 LDVNTLKGHGDS-VTGLCFSS--DGKCLATACADGVIRVHKLDDASSK---SFKFLRINLPPGGPPTAVAFADNATSIVV 155 (440)
Q Consensus 82 ~~~~~l~~H~~~-V~~l~~s~--dg~~l~t~s~dg~v~vW~~~~~~~~---~~~~~~~~~~~~~~v~~v~~~~~~~~l~~ 155 (440)
..+..+.+|.+. |++++|+| ++++|++|+.||+|++||+.++... ..........|...|.+++|+|+++++++
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 133 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 133 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence 356788999999 99999999 9999999999999999999654100 11234445567889999999999999999
Q ss_pred EeecCC-cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEE
Q 013578 156 ATHNLS-GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIW 234 (440)
Q Consensus 156 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vw 234 (440)
++.+.. ...+++|+....... ...+...+ ..+.++|+++.++++++.|+.|++|
T Consensus 134 ~~~~~~~~~~v~~~d~~~~~~~------------------~~~~~~~v-------~~~~~~~~~~~~l~~~~~d~~v~vw 188 (615)
T 1pgu_A 134 VGEGRDNFGVFISWDSGNSLGE------------------VSGHSQRI-------NACHLKQSRPMRSMTVGDDGSVVFY 188 (615)
T ss_dssp EECCSSCSEEEEETTTCCEEEE------------------CCSCSSCE-------EEEEECSSSSCEEEEEETTTEEEEE
T ss_pred eccCCCCccEEEEEECCCccee------------------eecCCccE-------EEEEECCCCCcEEEEEeCCCcEEEE
Confidence 986532 257788874332111 01121111 2234478887789999999999999
Q ss_pred eCCCCceeeeeeCCCC---cccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee-e---ccccceEEEE
Q 013578 235 HGKTGKLLGNVDTNQL---KNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL-K---GHKSAVTWLC 306 (440)
Q Consensus 235 d~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~---~h~~~v~~~~ 306 (440)
|+.+++.+..+..|.. .+.+++|+|+ +++|++++.||.|++||+..++ .+..+ . +|...|.+++
T Consensus 189 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--------~~~~~~~~~~~~~~~v~~~~ 260 (615)
T 1pgu_A 189 QGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE--------FLKYIEDDQEPVQGGIFALS 260 (615)
T ss_dssp ETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC--------EEEECCBTTBCCCSCEEEEE
T ss_pred eCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC--------EeEEecccccccCCceEEEE
Confidence 9999999999999988 8999999999 9999999999999999986654 55566 5 8999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCccccccCCCCc----------------------------------------------
Q 013578 307 FAPNSEQIITASKDGTLRVWNINVRYHLDEDPKT---------------------------------------------- 340 (440)
Q Consensus 307 ~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------------------------------------------- 340 (440)
|+ ++.+|++++.|+.|++||++++..+......
T Consensus 261 ~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~ 339 (615)
T 1pgu_A 261 WL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHN 339 (615)
T ss_dssp ES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCS
T ss_pred Ec-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCC
Confidence 99 9999999999999999999865432110000
Q ss_pred -------------------------------------------------------ccccccc------------------
Q 013578 341 -------------------------------------------------------LKVLPIP------------------ 347 (440)
Q Consensus 341 -------------------------------------------------------~~~~~~~------------------ 347 (440)
...+...
T Consensus 340 ~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~ 419 (615)
T 1pgu_A 340 KGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGF 419 (615)
T ss_dssp SCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSE
T ss_pred CCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCC
Confidence 0000000
Q ss_pred -----------------------------------------------------------c--cCCCCCeeeeeeEEeCCC
Q 013578 348 -----------------------------------------------------------L--LDSNGATLQYDRLSLSSD 366 (440)
Q Consensus 348 -----------------------------------------------------------~--~~~~~~~~~v~~~~~s~~ 366 (440)
. .....+...|.+++|+|+
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 499 (615)
T 1pgu_A 420 TAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPS 499 (615)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTT
T ss_pred EEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCC
Confidence 0 223345667889999999
Q ss_pred CCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecC----------CCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 367 GKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAP----------KTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 367 g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~----------~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
+++|++++ |+.|++||+.+++.+..+...|...|++++|+| ++ .+|++++.||.|++|++.
T Consensus 500 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~--------~~l~~~~~dg~i~iw~~~ 571 (615)
T 1pgu_A 500 ETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEE--------DLVATGSLDTNIFIYSVK 571 (615)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSC--------CEEEEEETTSCEEEEESS
T ss_pred CCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCC--------CEEEEEcCCCcEEEEECC
Confidence 99999875 899999999999999888433999999999999 87 899999999999999998
Q ss_pred CC
Q 013578 436 SL 437 (440)
Q Consensus 436 ~~ 437 (440)
++
T Consensus 572 ~~ 573 (615)
T 1pgu_A 572 RP 573 (615)
T ss_dssp CT
T ss_pred CC
Confidence 86
No 53
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=5.4e-36 Score=275.24 Aligned_cols=300 Identities=13% Similarity=0.172 Sum_probs=195.5
Q ss_pred ccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCC------cceeeEEecCCCC------------CCCceEEEccCC
Q 013578 89 GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASS------KSFKFLRINLPPG------------GPPTAVAFADNA 150 (440)
Q Consensus 89 ~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~------~~~~~~~~~~~~~------------~~v~~v~~~~~~ 150 (440)
.|.+.|++++|+|+|++||+|+.||.|+||++.+... ..........+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 4789999999999999999999999999999987642 1222344555676 789999999987
Q ss_pred --CeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCC
Q 013578 151 --TSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEG 228 (440)
Q Consensus 151 --~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 228 (440)
..+++++.+ ..+.+|+........... .. ..+... ..... ......+-.....
T Consensus 106 ~~~~l~s~s~d---~~i~iw~~~~~~~~~~~~------------~~-~~~~g~-~~~~~--------~~~~~~~~~~~~~ 160 (447)
T 3dw8_B 106 NAAQFLLSTND---KTIKLWKISERDKRPEGY------------NL-KEEDGR-YRDPT--------TVTTLRVPVFRPM 160 (447)
T ss_dssp SSSEEEEEECS---SCEEEEEEEEEEEEEECC------------SC-C---------CC--------CCCSCCCCEEEEE
T ss_pred CcceEEEeCCC---CeEEEEecccccCCccee------------cc-cCcccc-ccCcc--------cccceEeccccch
Confidence 566666554 344444433221000000 00 000000 00000 0000000000000
Q ss_pred ceEEEEeCCCCceeee-eeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeee-------eeecccc
Q 013578 229 TDISIWHGKTGKLLGN-VDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM-------QLKGHKS 300 (440)
Q Consensus 229 ~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~~h~~ 300 (440)
+ |... ..+... ...|...|.+++|+|++++|++| .|+.|++||++... . ... .+.+|..
T Consensus 161 ~----~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~----~---~~~~~~~~~~~~~~~~~ 227 (447)
T 3dw8_B 161 D----LMVE-ASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITD----R---SFNIVDIKPANMEELTE 227 (447)
T ss_dssp E----EEEE-EEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEE----E---EEEEEECCCSSGGGCCC
T ss_pred h----eeee-ccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCC----c---eeeeeecccccccccCc
Confidence 0 0000 111222 35788999999999999999999 79999999986432 1 122 3668999
Q ss_pred ceEEEEEcCCC-CEEEEEeCCCcEEEEecCccccccCCCCcccccccccc-----CCCCCeeeeeeEEeCCCCCEEEEec
Q 013578 301 AVTWLCFAPNS-EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLL-----DSNGATLQYDRLSLSSDGKILAATH 374 (440)
Q Consensus 301 ~v~~~~~~p~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~g~~l~~~~ 374 (440)
.|.+++|+|++ .+|++++.||.|++||++++...... ...+..... ...++...|.+++|+|+|++|++++
T Consensus 228 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 304 (447)
T 3dw8_B 228 VITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH---SKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD 304 (447)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT---CEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE
T ss_pred ceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce---eeEeccCCCccccccccccCceEEEEEECCCCCEEEEee
Confidence 99999999998 89999999999999999876532110 111100000 0001112689999999999999987
Q ss_pred CCEEEEEEcCC-ccchhhhhccccCC---------------eEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 375 GSTLQWLSVET-GKVLDTAEKAHEGE---------------ITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 375 ~~~i~i~d~~~-~~~~~~~~~~h~~~---------------v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
++.|++||+.+ ++.+..+ .+|... +..++|+|++ .+|++|+.||.|++||+.+++
T Consensus 305 ~~~v~iwd~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~--------~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 305 YLSVKVWDLNMENRPVETY-QVHEYLRSKLCSLYENDCIFDKFECCWNGSD--------SVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp SSEEEEEETTCCSSCSCCE-ESCGGGTTTHHHHHHTSGGGCCCCEEECTTS--------SEEEEECSTTEEEEEETTTCC
T ss_pred CCeEEEEeCCCCcccccee-eccccccccccccccccccccceEEEECCCC--------CEEEEeccCCEEEEEEcCCCc
Confidence 79999999997 7777777 467532 3349999998 899999999999999998765
No 54
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.9e-35 Score=261.08 Aligned_cols=288 Identities=15% Similarity=0.220 Sum_probs=225.7
Q ss_pred cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeec
Q 013578 90 HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYG 169 (440)
Q Consensus 90 H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~ 169 (440)
|.+.|.+++|+|||++++++..++.+.+|...... ......+|...|.+++|+|+++++++++ + ..+.+|+
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~~~~-d---g~i~iw~ 78 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHA-----RQINTLNHGEVVCAVTISNPTRHVYTGG-K---GCVKVWD 78 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEE-----EEEEEECCSSCCCEEEECSSSSEEEEEC-B---SEEEEEE
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCcc-----ccceeccCCCceEEEEEecCCcEEEEcC-C---CeEEEEE
Confidence 56789999999999999999888777666543321 1222347889999999999999999987 4 5777777
Q ss_pred cccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc--eeeeeeC
Q 013578 170 EEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK--LLGNVDT 247 (440)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~ 247 (440)
.......... ..... ..+... ...+.++|+++ ++++++.|+.|++||+.+++ ....+..
T Consensus 79 ~~~~~~~~~~----------~~~~~-~~~~~~-------v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 139 (337)
T 1gxr_A 79 ISHPGNKSPV----------SQLDC-LNRDNY-------IRSCKLLPDGC-TLIVGGEASTLSIWDLAAPTPRIKAELTS 139 (337)
T ss_dssp TTSTTCCSCS----------EEEEC-SCTTSB-------EEEEEECTTSS-EEEEEESSSEEEEEECCCC--EEEEEEEC
T ss_pred CCCCCceeee----------ecccc-cCCCCc-------EEEEEEcCCCC-EEEEEcCCCcEEEEECCCCCcceeeeccc
Confidence 6543211000 00000 011111 22234477887 89999999999999999887 5667788
Q ss_pred CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN 327 (440)
Q Consensus 248 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd 327 (440)
|...+.+++|+|++++|++++.||.|++||++..+ ....+.+|...|.+++|+|++.+|++++.|+.|++||
T Consensus 140 ~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d 211 (337)
T 1gxr_A 140 SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT--------LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211 (337)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc--------eeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEE
Confidence 88899999999999999999999999999986554 5677888999999999999999999999999999999
Q ss_pred cCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEec
Q 013578 328 INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWA 406 (440)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~ 406 (440)
++++..... . .+...+.+++|+|++++++++. ++.|++||+.+++... + ..|...|.+++|+
T Consensus 212 ~~~~~~~~~-------~--------~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~-~~~~~~v~~~~~~ 274 (337)
T 1gxr_A 212 LREGRQLQQ-------H--------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-L-HLHESCVLSLKFA 274 (337)
T ss_dssp TTTTEEEEE-------E--------ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-E-CCCSSCEEEEEEC
T ss_pred CCCCceEee-------e--------cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-E-cCCccceeEEEEC
Confidence 987644321 0 1234578999999999999876 8999999999987654 3 4799999999999
Q ss_pred CCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 407 PKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 407 ~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
|++ ++|++++.||.|++|++.+++
T Consensus 275 ~~~--------~~l~~~~~dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 275 YCG--------KWFVSTGKDNLLNAWRTPYGA 298 (337)
T ss_dssp TTS--------SEEEEEETTSEEEEEETTTCC
T ss_pred CCC--------CEEEEecCCCcEEEEECCCCe
Confidence 998 899999999999999998875
No 55
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.7e-36 Score=263.77 Aligned_cols=278 Identities=17% Similarity=0.237 Sum_probs=207.2
Q ss_pred CCCCCCCCCCCcccCcc---------ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCC
Q 013578 66 HSHSHGDKDQNKRHHPL---------DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLP 136 (440)
Q Consensus 66 ~~~~~~~~~~~~~~~~~---------~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~ 136 (440)
....+++.|+.++.|.. ++..+.+|...|.+++|+|+|++|++|+.|++|++||+.+++ ......+
T Consensus 31 ~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~-----~~~~~~~ 105 (319)
T 3frx_A 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE-----TYQRFVG 105 (319)
T ss_dssp TEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----EEEEEEC
T ss_pred cEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCC-----eeEEEcc
Confidence 34577788888888853 367899999999999999999999999999999999998764 3455667
Q ss_pred CCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCC
Q 013578 137 PGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA 216 (440)
Q Consensus 137 ~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (440)
|...|.+++|+|++..+++++.| ..+.+|+....... ....|...+....+.+ ......
T Consensus 106 h~~~v~~~~~~~~~~~l~s~s~D---~~i~vwd~~~~~~~-----------------~~~~h~~~v~~~~~~~-~~~~~~ 164 (319)
T 3frx_A 106 HKSDVMSVDIDKKASMIISGSRD---KTIKVWTIKGQCLA-----------------TLLGHNDWVSQVRVVP-NEKADD 164 (319)
T ss_dssp CSSCEEEEEECTTSCEEEEEETT---SCEEEEETTSCEEE-----------------EECCCSSCEEEEEECC-C-----
T ss_pred CCCcEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeEE-----------------EEeccCCcEEEEEEcc-CCCCCC
Confidence 88999999999999999999988 46777765422100 0011111111111100 000112
Q ss_pred CCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee
Q 013578 217 DGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK 296 (440)
Q Consensus 217 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 296 (440)
++. .+++++.|+.|++||+++++....+..|...|.+++|+|++++|++|+.||.|++||+...+ .+..+.
T Consensus 165 ~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~--------~~~~~~ 235 (319)
T 3frx_A 165 DSV-TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK--------AMYTLS 235 (319)
T ss_dssp -CC-EEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE--------EEEEEE
T ss_pred Ccc-EEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--------EEEEec
Confidence 333 89999999999999999999999999999999999999999999999999999999986554 455555
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-C
Q 013578 297 GHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-G 375 (440)
Q Consensus 297 ~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~ 375 (440)
. ...|.+++|+|++.+|++++.+ .+++|++............. ......+...+.+++|+|||++|++|+ |
T Consensus 236 ~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~------~~~~~~~~~~v~~~~~spdg~~l~sg~~D 307 (319)
T 3frx_A 236 A-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEF------AGYSKAAEPHAVSLAWSADGQTLFAGYTD 307 (319)
T ss_dssp C-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCC------TTCCGGGCCCEEEEEECTTSSEEEEEETT
T ss_pred C-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccc------cccccCcCcceeEEEECCCCCEEEEeecC
Confidence 4 4689999999999999888754 69999998654432111000 001112344578999999999999876 8
Q ss_pred CEEEEEEcCCc
Q 013578 376 STLQWLSVETG 386 (440)
Q Consensus 376 ~~i~i~d~~~~ 386 (440)
+.|++||+.++
T Consensus 308 g~i~vWd~~t~ 318 (319)
T 3frx_A 308 NVIRVWQVMTA 318 (319)
T ss_dssp SCEEEEEEEEC
T ss_pred ceEEEEEEeec
Confidence 99999998764
No 56
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.4e-36 Score=273.53 Aligned_cols=284 Identities=14% Similarity=0.149 Sum_probs=214.9
Q ss_pred CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecc
Q 013578 91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGE 170 (440)
Q Consensus 91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~ 170 (440)
...+++++|+|+|++|++|+.||.|++||+.+..... ....+ ..+....|+++++++++++.+ ..+.+|+.
T Consensus 56 ~~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~ 126 (420)
T 3vl1_A 56 VDAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK-----MLKRA-DYTAVDTAKLQMRRFILGTTE---GDIKVLDS 126 (420)
T ss_dssp CBCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT-----TSCSC-CEEEEEEECSSSCEEEEEETT---SCEEEECT
T ss_pred cccccceeeeecCCeEEEEEcCCcEEEEEecccceee-----EEecC-CceEEEEEecCCCEEEEEECC---CCEEEEeC
Confidence 3446689999999999999999999999998654321 11122 334455789999999999877 46777775
Q ss_pred ccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCC
Q 013578 171 EKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQL 250 (440)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 250 (440)
....... ....|...+ ..+.++|+++ +|++++.|+.|++||+.+++.+..+..|..
T Consensus 127 ~~~~~~~----------------~~~~h~~~v-------~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~ 182 (420)
T 3vl1_A 127 NFNLQRE----------------IDQAHVSEI-------TKLKFFPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGHRA 182 (420)
T ss_dssp TSCEEEE----------------ETTSSSSCE-------EEEEECTTSS-EEEEEETTSEEEEEETTTCCCCEEEECCSS
T ss_pred CCcceee----------------ecccccCcc-------EEEEECCCCC-EEEEEeCCCeEEEEeCCCCcCceEEcCCCC
Confidence 4331110 111122222 2234478888 999999999999999999999999999999
Q ss_pred cccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec---c---------------------ccceEEEE
Q 013578 251 KNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG---H---------------------KSAVTWLC 306 (440)
Q Consensus 251 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---h---------------------~~~v~~~~ 306 (440)
.|.+++|+|++++|++++.||.|++||++.++ .+..+.. | ...+.+++
T Consensus 183 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~ 254 (420)
T 3vl1_A 183 TVTDIAIIDRGRNVLSASLDGTIRLWECGTGT--------TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLE 254 (420)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEETTTTE--------EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTC
T ss_pred cEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc--------eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceE
Confidence 99999999999999999999999999986543 3333332 2 34555566
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEec-CCEEEEEEcC
Q 013578 307 FAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATH-GSTLQWLSVE 384 (440)
Q Consensus 307 ~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~-~~~i~i~d~~ 384 (440)
|+|++++|++++.||.|++||++++..... ....+...|.+++|+|+++ +|++|+ |+.|++||+.
T Consensus 255 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------------~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~ 321 (420)
T 3vl1_A 255 FGTYGKYVIAGHVSGVITVHNVFSKEQTIQ-------------LPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLR 321 (420)
T ss_dssp SSCTTEEEEEEETTSCEEEEETTTCCEEEE-------------ECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred EcCCCCEEEEEcCCCeEEEEECCCCceeEE-------------cccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcC
Confidence 689999999999999999999986543211 1124556799999999998 888765 8999999999
Q ss_pred Cccc-hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 385 TGKV-LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 385 ~~~~-~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
+++. +..+...|...|.++.|. ++ .+|++++.||.|++|++...
T Consensus 322 ~~~~~~~~~~~~~~~~v~~~~~~-~~--------~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 322 SPECPVGEFLINEGTPINNVYFA-AG--------ALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp CTTSCSEEEEESTTSCEEEEEEE-TT--------EEEEEETTTEEEEEEEECCT
T ss_pred CCcCchhhhhccCCCCceEEEeC-CC--------CEEEEecCCccEEEEeccCC
Confidence 9865 556643477788888665 55 79999999999999998763
No 57
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.9e-35 Score=256.96 Aligned_cols=285 Identities=18% Similarity=0.236 Sum_probs=218.0
Q ss_pred ceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccc
Q 013578 93 SVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEK 172 (440)
Q Consensus 93 ~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 172 (440)
..++|+||+++ +||+| .|++|+|||+.+++.. .......|...|.+++|+|+++++++++.| ..+.+|+...
T Consensus 27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~---~~~~~~~~~~~V~~v~~~~~~~~l~sgs~D---g~v~iw~~~~ 98 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDIL---QLLQMEQPGEYISSVAWIKEGNYLAVGTSS---AEVQLWDVQQ 98 (318)
T ss_dssp TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEE---EEEECCSTTCCEEEEEECTTSSEEEEEETT---SEEEEEETTT
T ss_pred cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEE---EEEEecCCCCeEEEEEECCCCCEEEEEECC---CcEEEeecCC
Confidence 35789999886 77766 5999999999887532 112334677889999999999999999987 5677777654
Q ss_pred ccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC-ceeeeeeCCCCc
Q 013578 173 AISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG-KLLGNVDTNQLK 251 (440)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~ 251 (440)
...... ...|..... ....++. .+++++.++.+++|+.... ..+..+..|...
T Consensus 99 ~~~~~~----------------~~~h~~~~~---------~~~~~~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (318)
T 4ggc_A 99 QKRLRN----------------MTSHSARVG---------SLSWNSY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE 152 (318)
T ss_dssp TEEEEE----------------EECCSSCEE---------EEEEETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSC
T ss_pred ceeEEE----------------ecCccceEE---------EeecCCC-EEEEEecCCceEeeecCCCceeEEEEcCccCc
Confidence 421110 111111111 1123444 8999999999999998865 456777889999
Q ss_pred ccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEE---EEEeCCCcEEEEec
Q 013578 252 NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQI---ITASKDGTLRVWNI 328 (440)
Q Consensus 252 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l---~s~~~dg~i~iwd~ 328 (440)
+.++.+++++++|++++.||.|++||++.++.. .........|.+.|.++.++|++..+ ++++.+++|++||.
T Consensus 153 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~ 228 (318)
T 4ggc_A 153 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG----WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 228 (318)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEESSCBTTB----SCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEET
T ss_pred eEEEEEcCCCCEEEEEecCcceeEEECCCCccc----ccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEec
Confidence 999999999999999999999999999766521 12344566788899999999977643 46678899999999
Q ss_pred CccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe---cCCEEEEEEcCCccchhhhhccccCCeEEEEe
Q 013578 329 NVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT---HGSTLQWLSVETGKVLDTAEKAHEGEITCMAW 405 (440)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~---~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~ 405 (440)
+....... ..+...+..+.|+|++..++++ .|+.|++||+.+++++..+ .+|.+.|++++|
T Consensus 229 ~~~~~~~~---------------~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l-~gH~~~V~~l~~ 292 (318)
T 4ggc_A 229 CSGACLSA---------------VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL-KGHTSRVLSLTM 292 (318)
T ss_dssp TTCCEEEE---------------EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE-CCCSSCEEEEEE
T ss_pred cccccccc---------------ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEE-cCCCCCEEEEEE
Confidence 86533211 1223447789999999977754 3799999999999999998 599999999999
Q ss_pred cCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 406 APKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 406 ~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
+|++ .+|+|||.||+|+|||+....|
T Consensus 293 spdg--------~~l~S~s~D~~v~iWd~~~~dP 318 (318)
T 4ggc_A 293 SPDG--------ATVASAAADETLRLWRCFELDP 318 (318)
T ss_dssp CTTS--------SCEEEEETTTEEEEECCSCCCC
T ss_pred cCCC--------CEEEEEecCCeEEEEECCCCCC
Confidence 9998 8999999999999999988764
No 58
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.5e-35 Score=292.62 Aligned_cols=253 Identities=17% Similarity=0.274 Sum_probs=218.5
Q ss_pred ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
..+.+.+|.+.|.+++|+|+|++||+|+.||.|+|||+.++. .......|..+|.+++|+|+++
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~----------- 68 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV-----EVRSIQVTETPVRAGKFIARKN----------- 68 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----EEEEEECCSSCEEEEEEEGGGT-----------
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----eEEEEecCCCcEEEEEEeCCCC-----------
Confidence 356789999999999999999999999999999999998754 3344457888999999998765
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL 242 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 242 (440)
+|++++.|+.|++||+.+++.+
T Consensus 69 ----------------------------------------------------------~l~~~~~dg~i~vw~~~~~~~~ 90 (814)
T 3mkq_A 69 ----------------------------------------------------------WIIVGSDDFRIRVFNYNTGEKV 90 (814)
T ss_dssp ----------------------------------------------------------EEEEEETTSEEEEEETTTCCEE
T ss_pred ----------------------------------------------------------EEEEEeCCCeEEEEECCCCcEE
Confidence 6777888999999999999999
Q ss_pred eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC-CCCEEEEEeCCC
Q 013578 243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP-NSEQIITASKDG 321 (440)
Q Consensus 243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~dg 321 (440)
..+..|...+.+++|+|++++|++++.||.|++||+..+. .....+.+|...|.+++|+| ++..|++++.||
T Consensus 91 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 163 (814)
T 3mkq_A 91 VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (814)
T ss_dssp EEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS-------EEEEEEECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred EEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc-------eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCC
Confidence 9999999999999999999999999999999999986542 25667788999999999999 889999999999
Q ss_pred cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC--CCCEEEEec-CCEEEEEEcCCccchhhhhccccC
Q 013578 322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS--DGKILAATH-GSTLQWLSVETGKVLDTAEKAHEG 398 (440)
Q Consensus 322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~ 398 (440)
.|++||+++..... .. ...+...+..++|+| ++.+|++++ ++.|++||..+++.+..+ .+|.+
T Consensus 164 ~v~vwd~~~~~~~~-------~~------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~ 229 (814)
T 3mkq_A 164 TVKVWSLGQSTPNF-------TL------TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGHMS 229 (814)
T ss_dssp EEEEEETTCSSCSE-------EE------ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE-ECCSS
T ss_pred eEEEEECCCCccee-------EE------ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE-cCCCC
Confidence 99999997543211 00 112234578899999 999998876 899999999999988887 58999
Q ss_pred CeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 399 EITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 399 ~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
.|.+++|+|++ .+|++++.||.|++|++.+++
T Consensus 230 ~v~~~~~~~~~--------~~l~~~~~dg~v~vwd~~~~~ 261 (814)
T 3mkq_A 230 NVSFAVFHPTL--------PIIISGSEDGTLKIWNSSTYK 261 (814)
T ss_dssp CEEEEEECSSS--------SEEEEEETTSCEEEEETTTCS
T ss_pred CEEEEEEcCCC--------CEEEEEeCCCeEEEEECCCCc
Confidence 99999999998 899999999999999998764
No 59
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-36 Score=278.59 Aligned_cols=254 Identities=10% Similarity=0.031 Sum_probs=194.5
Q ss_pred cCcceeEEEEccCC---------CEEEE-------------------eeCCCcEEEEecCCCCCcceeeEEecCCCCCCC
Q 013578 90 HGDSVTGLCFSSDG---------KCLAT-------------------ACADGVIRVHKLDDASSKSFKFLRINLPPGGPP 141 (440)
Q Consensus 90 H~~~V~~l~~s~dg---------~~l~t-------------------~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v 141 (440)
+.+.|.+|+|+|++ ++||+ ++.|++|+||++.+++.... .......|.+.|
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~-~~~~l~~~~~~V 210 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCV-KVQTIVHSFGEV 210 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEE-EEEEEEECCCSE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCce-EEEEEEecCCcE
Confidence 67899999999986 66766 45789999999987653211 112223456789
Q ss_pred ceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeE
Q 013578 142 TAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTI 221 (440)
Q Consensus 142 ~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (440)
.+++|+|++.. .+++. +
T Consensus 211 ~~v~wsp~~~~--------------------------------------------------------------~~~~~-~ 227 (524)
T 2j04_B 211 WDLKWHEGCHA--------------------------------------------------------------PHLVG-C 227 (524)
T ss_dssp EEEEECSSCCC--------------------------------------------------------------SSSSC-E
T ss_pred EEEEECCCCCC--------------------------------------------------------------CCCCc-e
Confidence 99999987420 22333 8
Q ss_pred EEEeeCCceEEEEeCCCCce-----------eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeee
Q 013578 222 IASCSEGTDISIWHGKTGKL-----------LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVT 290 (440)
Q Consensus 222 l~s~~~d~~i~vwd~~~~~~-----------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 290 (440)
|++++.|++|++||+.++.. ...+..|...+.+++|+++ ..|++|+.||+|++||++.+. .
T Consensus 228 LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~-------~ 299 (524)
T 2j04_B 228 LSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPE-------V 299 (524)
T ss_dssp EEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCS-------S
T ss_pred EEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCC-------C
Confidence 99999999999999987642 2356778899999999986 489999999999999997543 1
Q ss_pred eeeeeeccccceEEE--EEcCCC-CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC
Q 013578 291 SVMQLKGHKSAVTWL--CFAPNS-EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG 367 (440)
Q Consensus 291 ~~~~~~~h~~~v~~~--~~~p~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 367 (440)
....+.+|...|.++ .|+|++ .+|+|++.|++|+|||+++..+... +. .+. ....|.+++|+|++
T Consensus 300 ~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~-------~~--~~~---~~~~v~~v~fsp~~ 367 (524)
T 2j04_B 300 PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKT-------TV--SRF---RGSNLVPVVYCPQI 367 (524)
T ss_dssp CSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCE-------EE--EEC---SCCSCCCEEEETTT
T ss_pred ceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccc-------cc--ccc---ccCcccceEeCCCc
Confidence 345678899999999 578887 8999999999999999987654321 00 000 01136789999999
Q ss_pred CEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 368 KILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 368 ~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
+.+++++ |+.|++||++++.++..+ .+|.+.|++|+|+|++ .+|++|+.||+|++|++..
T Consensus 368 ~~l~s~~~d~tv~lwd~~~~~~~~~l-~gH~~~V~sva~Sp~g--------~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 368 YSYIYSDGASSLRAVPSRAAFAVHPL-VSRETTITAIGVSRLH--------PMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp TEEEEECSSSEEEEEETTCTTCCEEE-EECSSCEEEEECCSSC--------CBCEEEETTTEEECCBSCS
T ss_pred CeEEEeCCCCcEEEEECcccccceee-ecCCCceEEEEeCCCC--------CeEEEEECCCEEEEEechH
Confidence 9888765 889999999999988777 5899999999999998 8999999999999999754
No 60
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.7e-35 Score=280.83 Aligned_cols=314 Identities=12% Similarity=0.168 Sum_probs=228.5
Q ss_pred CCCCCCCCCcccCcc----ccccccccCc---ceeEEEEccC-CCEEEEeeCCCcEEEEecCCCCCcceeeEEec-C---
Q 013578 68 HSHGDKDQNKRHHPL----DVNTLKGHGD---SVTGLCFSSD-GKCLATACADGVIRVHKLDDASSKSFKFLRIN-L--- 135 (440)
Q Consensus 68 ~~~~~~~~~~~~~~~----~~~~l~~H~~---~V~~l~~s~d-g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~-~--- 135 (440)
..++..++..+.|.. .+..+.+|.+ .|.+++|+|+ +++|++++.||.|++||+.++.. .... .
T Consensus 176 l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-----~~~~~~~~~ 250 (615)
T 1pgu_A 176 SMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF-----LKYIEDDQE 250 (615)
T ss_dssp EEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE-----EEECCBTTB
T ss_pred EEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCE-----eEEeccccc
Confidence 455566777777764 4567889999 9999999999 99999999999999999987642 2333 3
Q ss_pred CCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccC
Q 013578 136 PPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGT 215 (440)
Q Consensus 136 ~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (440)
.|...|.+++|+ +++++++++.+ ..+.+|+.............. ......... +. .
T Consensus 251 ~~~~~v~~~~~~-~~~~l~~~~~d---~~i~~wd~~~~~~~~~~~~~~------------~~~~~~~~~-------~~-~ 306 (615)
T 1pgu_A 251 PVQGGIFALSWL-DSQKFATVGAD---ATIRVWDVTTSKCVQKWTLDK------------QQLGNQQVG-------VV-A 306 (615)
T ss_dssp CCCSCEEEEEES-SSSEEEEEETT---SEEEEEETTTTEEEEEEECCT------------TCGGGCEEE-------EE-E
T ss_pred ccCCceEEEEEc-CCCEEEEEcCC---CcEEEEECCCCcEEEEEcCCC------------CcccCceeE-------EE-e
Confidence 788999999999 99999999877 567777765432111110000 000000000 11 1
Q ss_pred CCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCC---------------------------------CC
Q 013578 216 ADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPN---------------------------------GR 262 (440)
Q Consensus 216 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~---------------------------------~~ 262 (440)
+++. ++++++.|+.|++||+.+++.+..+..|...+.+++| |+ ++
T Consensus 307 ~~~~-~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~ 384 (615)
T 1pgu_A 307 TGNG-RIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQ 384 (615)
T ss_dssp EETT-EEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTT
T ss_pred CCCC-eEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCc
Confidence 2444 7888888888888888877777666666555555554 33 66
Q ss_pred eEEEEecCCCEEEEEeEecC------------------------------------------------------------
Q 013578 263 FLAAAAFTADVKVWEIVYSK------------------------------------------------------------ 282 (440)
Q Consensus 263 ~l~~~~~dg~i~i~d~~~~~------------------------------------------------------------ 282 (440)
.|++++.|+.|++||+....
T Consensus 385 ~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 464 (615)
T 1pgu_A 385 EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLE 464 (615)
T ss_dssp CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEET
T ss_pred EEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeec
Confidence 66777777777777765421
Q ss_pred -CCceeee-----eee-eeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCC-C
Q 013578 283 -DGLVKAV-----TSV-MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNG-A 354 (440)
Q Consensus 283 -~~~~~~~-----~~~-~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 354 (440)
++....+ ... ..+.+|...|++++|+|++++|++++.||.|++||++++..+.. ..+ |
T Consensus 465 ~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~--------------~~~~h 530 (615)
T 1pgu_A 465 EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTS--------------RWAFR 530 (615)
T ss_dssp TTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEC--------------CSCCC
T ss_pred CCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeE--------------eecCC
Confidence 1111000 011 45667899999999999999999999999999999987654321 223 5
Q ss_pred eeeeeeEEeCC----------CCCEEEEec-CCEEEEEEcCCc-cchhhhhccccCCeEEEEecCCCCCCCCCcceEEEE
Q 013578 355 TLQYDRLSLSS----------DGKILAATH-GSTLQWLSVETG-KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLAT 422 (440)
Q Consensus 355 ~~~v~~~~~s~----------~g~~l~~~~-~~~i~i~d~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t 422 (440)
...|.+++|+| ++++|++++ |+.|++||+.++ +.+..+ .+|.+.|++++|+|++ . |++
T Consensus 531 ~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~h~~~v~~l~~s~~~--------~-l~s 600 (615)
T 1pgu_A 531 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL-NAHKDGVNNLLWETPS--------T-LVS 600 (615)
T ss_dssp SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET-TSSTTCEEEEEEEETT--------E-EEE
T ss_pred CCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhh-hcCccceEEEEEcCCC--------C-eEE
Confidence 67799999999 999999876 899999999998 666666 6899999999999998 8 999
Q ss_pred eeCCCeEEEEeCCC
Q 013578 423 SSVDKKVKLWLAPS 436 (440)
Q Consensus 423 ~~~Dg~i~vw~~~~ 436 (440)
++.||.|++|++..
T Consensus 601 ~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 601 SGADACIKRWNVVL 614 (615)
T ss_dssp EETTSCEEEEEEC-
T ss_pred ecCCceEEEEeeec
Confidence 99999999999875
No 61
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-35 Score=291.78 Aligned_cols=208 Identities=13% Similarity=0.076 Sum_probs=159.9
Q ss_pred cccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578 82 LDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS 161 (440)
Q Consensus 82 ~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~ 161 (440)
.......||.+.|++++|+|++++||+|+.||+|+||+..... . .....|...|.+++|+| +++|++++.+
T Consensus 8 ~~~~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~-----~-~~~~~~~~~V~~l~fsp-g~~L~S~s~D-- 78 (902)
T 2oaj_A 8 LAETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVE-----V-VIKLEDRSAIKEMRFVK-GIYLVVINAK-- 78 (902)
T ss_dssp EEEEEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCE-----E-EEECSSCCCEEEEEEET-TTEEEEEETT--
T ss_pred eccccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcE-----E-EEEcCCCCCEEEEEEcC-CCEEEEEECc--
Confidence 3344456999999999999999999999999999999987543 1 22234678999999999 8888888876
Q ss_pred cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578 162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL 241 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 241 (440)
..+.+|+........ .+. +. .....+.++|+++ ++++|+.||.|++||+++++.
T Consensus 79 -~~v~lWd~~~~~~~~-------------~~~----~~-------~~V~~v~~sp~g~-~l~sgs~dg~V~lwd~~~~~~ 132 (902)
T 2oaj_A 79 -DTVYVLSLYSQKVLT-------------TVF----VP-------GKITSIDTDASLD-WMLIGLQNGSMIVYDIDRDQL 132 (902)
T ss_dssp -CEEEEEETTTCSEEE-------------EEE----CS-------SCEEEEECCTTCS-EEEEEETTSCEEEEETTTTEE
T ss_pred -CeEEEEECCCCcEEE-------------EEc----CC-------CCEEEEEECCCCC-EEEEEcCCCcEEEEECCCCcc
Confidence 577888765431110 000 00 1123345578888 899999999999999998875
Q ss_pred e-----------eeeeCCCCcccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec------------
Q 013578 242 L-----------GNVDTNQLKNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG------------ 297 (440)
Q Consensus 242 ~-----------~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~------------ 297 (440)
. ..+..|...|.+++|+|+ +..|++|+.||.| +||++... ....+..
T Consensus 133 ~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~--------~~~~~~~~~~~g~~~~~~~ 203 (902)
T 2oaj_A 133 SSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENE--------IKQSFIYELPPFAPGGDFS 203 (902)
T ss_dssp EEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTE--------EEEEECCCBCTTCCCSTTC
T ss_pred ccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCc--------eEEEEecccCCcCCCcccc
Confidence 3 234567889999999996 5789999999999 99986543 3333433
Q ss_pred ------cccceEEEEEcCCCCEEEEEeCCCcEEEEecCcccc
Q 013578 298 ------HKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYH 333 (440)
Q Consensus 298 ------h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~ 333 (440)
|...|++++|+|+|.+|++++.||+|++||+++++.
T Consensus 204 ~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 204 EKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHM 245 (902)
T ss_dssp CCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCE
T ss_pred cccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE
Confidence 457899999999999999999999999999976554
No 62
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.6e-35 Score=304.94 Aligned_cols=354 Identities=16% Similarity=0.181 Sum_probs=261.5
Q ss_pred CCCCCCCCCcccCcc----ccccccccCcceeEEEEcc--CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCC
Q 013578 68 HSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSS--DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPP 141 (440)
Q Consensus 68 ~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~--dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v 141 (440)
.+++..++.++.|.. .+..+.+|.+.|.+++|+| ++.++++|+.||.|++||+.++. ......+|...|
T Consensus 672 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~-----~~~~~~~h~~~v 746 (1249)
T 3sfz_A 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE-----CRNTMFGHTNSV 746 (1249)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS-----EEEEECCCSSCE
T ss_pred EEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc-----hhheecCCCCCE
Confidence 344556777777754 4678889999999999999 55689999999999999998765 345566888999
Q ss_pred ceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccC--------------C----------------CCCCcee
Q 013578 142 TAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQS--------------K----------------LPGPEIK 191 (440)
Q Consensus 142 ~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~----------------~~~~~~~ 191 (440)
.+++|+|+++.+++++.+ ..+.+|+.............. . .......
T Consensus 747 ~~~~~sp~~~~l~s~s~d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~ 823 (1249)
T 3sfz_A 747 NHCRFSPDDELLASCSAD---GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLL 823 (1249)
T ss_dssp EEEEECSSTTEEEEEESS---SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEE
T ss_pred EEEEEecCCCEEEEEECC---CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEE
Confidence 999999999999999887 467777765432111100000 0 0011122
Q ss_pred ecccccccceeEE--EeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec
Q 013578 192 WEHHKVHDKRAIL--TLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF 269 (440)
Q Consensus 192 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 269 (440)
|+........... .......+.++|++. ++++++.|+.|++||+.++..+..+..|...|.+++|+|++++|++++.
T Consensus 824 ~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~ 902 (1249)
T 3sfz_A 824 FDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-LAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASD 902 (1249)
T ss_dssp EETTTCCEEEEEECSSSSCCCEEEECSSTT-EEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEecCCCceeEEcCCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeC
Confidence 3322222111111 011234456688888 8999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeEecC------------------------------------------------------------------C
Q 013578 270 TADVKVWEIVYSK------------------------------------------------------------------D 283 (440)
Q Consensus 270 dg~i~i~d~~~~~------------------------------------------------------------------~ 283 (440)
||.|++|++.... +
T Consensus 903 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~ 982 (1249)
T 3sfz_A 903 DQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDED 982 (1249)
T ss_dssp TSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETT
T ss_pred CCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCC
Confidence 9999999954210 0
Q ss_pred Ccee-----eeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCcccc---------------
Q 013578 284 GLVK-----AVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKV--------------- 343 (440)
Q Consensus 284 ~~~~-----~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--------------- 343 (440)
+... .......+.+|...|.+++|+|++++|++++.||.|++||+.++............
T Consensus 983 g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~ 1062 (1249)
T 3sfz_A 983 GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWS 1062 (1249)
T ss_dssp SCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEE
T ss_pred CCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEE
Confidence 0000 01123455679999999999999999999999999999999876554221111000
Q ss_pred -------ccc----cccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCC
Q 013578 344 -------LPI----PLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411 (440)
Q Consensus 344 -------~~~----~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 411 (440)
+.. ......+|...|.+++|+|+++++++++ |+.|++||+.+++.+..+ .+|.+.|++++|+|++
T Consensus 1063 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l-~~h~~~v~~~~~s~dg-- 1139 (1249)
T 3sfz_A 1063 FDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL-KGHNGCVRCSAFSLDG-- 1139 (1249)
T ss_dssp SSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCC-CCCSSCEEEEEECSSS--
T ss_pred CCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeee-ccCCCcEEEEEECCCC--
Confidence 000 0111224566788999999999998876 899999999999998888 5899999999999998
Q ss_pred CCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 412 MGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 412 ~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
.+|++|+.||.|++|++.++++
T Consensus 1140 ------~~lat~~~dg~i~vwd~~~~~~ 1161 (1249)
T 3sfz_A 1140 ------ILLATGDDNGEIRIWNVSDGQL 1161 (1249)
T ss_dssp ------SEEEEEETTSCCCEEESSSSCC
T ss_pred ------CEEEEEeCCCEEEEEECCCCce
Confidence 8999999999999999998764
No 63
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.9e-35 Score=302.17 Aligned_cols=316 Identities=16% Similarity=0.263 Sum_probs=234.5
Q ss_pred ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
....+.+|.+.|++++|+|||++|++|+.||+|++||+.++. .......|...|.+++|+|+++++++++.+
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d--- 678 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-----KLLDIKAHEDEVLCCAFSSDDSYIATCSAD--- 678 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEETT---
T ss_pred ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-----EEEEeccCCCCEEEEEEecCCCEEEEEeCC---
Confidence 345678999999999999999999999999999999998765 344556888999999999999999999876
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCC-CCeEEEEeeCCceEEEEeCCCCce
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTAD-GSTIIASCSEGTDISIWHGKTGKL 241 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~ 241 (440)
..+.+|+........ .+ ..+...+ .++.++++ ...++++++.|+.|++||+.+++.
T Consensus 679 ~~v~vwd~~~~~~~~-------------~~---~~~~~~v-------~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~ 735 (1249)
T 3sfz_A 679 KKVKIWDSATGKLVH-------------TY---DEHSEQV-------NCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC 735 (1249)
T ss_dssp SEEEEEETTTCCEEE-------------EE---ECCSSCE-------EEEEECSSSSCCEEEEEETTSCEEEEETTSSSE
T ss_pred CeEEEEECCCCceEE-------------EE---cCCCCcE-------EEEEEecCCCceEEEEEeCCCeEEEEECCCcch
Confidence 467788765432110 00 1111111 12233453 333889999999999999999999
Q ss_pred eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCcee----------------------------------
Q 013578 242 LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVK---------------------------------- 287 (440)
Q Consensus 242 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---------------------------------- 287 (440)
+..+..|...|.+++|+|++++|++++.||.|++||+..+......
T Consensus 736 ~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 815 (1249)
T 3sfz_A 736 RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIV 815 (1249)
T ss_dssp EEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEE
T ss_pred hheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEE
Confidence 9999999999999999999999999999999999998543210000
Q ss_pred ------------eeeeee-eeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCc--------------
Q 013578 288 ------------AVTSVM-QLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKT-------------- 340 (440)
Q Consensus 288 ------------~~~~~~-~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------- 340 (440)
...... ...+|...|.+++|+|++.++++++.||.|++||+.++.........
T Consensus 816 ~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~ 895 (1249)
T 3sfz_A 816 AAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGS 895 (1249)
T ss_dssp EETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred EcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCC
Confidence 000111 12378899999999999999999999999999999876543211000
Q ss_pred ----------ccccccccc------------------------------------CC-----CCCeeeeeeEEeCCCCCE
Q 013578 341 ----------LKVLPIPLL------------------------------------DS-----NGATLQYDRLSLSSDGKI 369 (440)
Q Consensus 341 ----------~~~~~~~~~------------------------------------~~-----~~~~~~v~~~~~s~~g~~ 369 (440)
...+..... .. ......+.+++|+|++++
T Consensus 896 ~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~ 975 (1249)
T 3sfz_A 896 SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEY 975 (1249)
T ss_dssp EEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSE
T ss_pred EEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCE
Confidence 000000000 00 001124667788888888
Q ss_pred EEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 370 LAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 370 l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
+++|+ +|.|++||+.+++....+ .+|.+.|++++|+|++ .+|++++.||.|++|++.+++
T Consensus 976 l~~g~~~g~i~i~d~~~~~~~~~~-~~h~~~v~~l~~s~dg--------~~l~s~~~dg~i~vwd~~~~~ 1036 (1249)
T 3sfz_A 976 VAFGDEDGAIKIIELPNNRVFSSG-VGHKKAVRHIQFTADG--------KTLISSSEDSVIQVWNWQTGD 1036 (1249)
T ss_dssp EEEEETTSCCEEEETTTTSCEEEC-CCCSSCCCCEEECSSS--------SCEEEECSSSBEEEEETTTTE
T ss_pred EEEEcCCCCEEEEEcCCCceeeec-ccCCCceEEEEECCCC--------CEEEEEcCCCEEEEEECCCCc
Confidence 87765 788888888888877777 5899999999999998 899999999999999998764
No 64
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-34 Score=253.65 Aligned_cols=284 Identities=13% Similarity=0.185 Sum_probs=198.3
Q ss_pred CCCCCCCCCCcccCccc------cccc-cc-cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCC--cceeeEEecCC
Q 013578 67 SHSHGDKDQNKRHHPLD------VNTL-KG-HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASS--KSFKFLRINLP 136 (440)
Q Consensus 67 ~~~~~~~~~~~~~~~~~------~~~l-~~-H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~--~~~~~~~~~~~ 136 (440)
..+++..|+.+++|... +..+ .+ |.+.|++++|+|++++|++|+.|++|+||++..... ..........+
T Consensus 26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 105 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEG 105 (330)
T ss_dssp EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-
T ss_pred EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcC
Confidence 45677788888887543 2344 44 999999999999999999999999999999864321 11234455678
Q ss_pred CCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCC
Q 013578 137 PGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA 216 (440)
Q Consensus 137 ~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (440)
|...|.+++|+|++++|++++.| ..+.+|+....... .........|... ...+.++|
T Consensus 106 h~~~V~~v~~sp~g~~las~s~D---~~v~iwd~~~~~~~------------~~~~~~~~~h~~~-------v~~v~~~p 163 (330)
T 2hes_X 106 HENEVKGVAWSNDGYYLATCSRD---KSVWIWETDESGEE------------YECISVLQEHSQD-------VKHVIWHP 163 (330)
T ss_dssp ---CEEEEEECTTSCEEEEEETT---SCEEEEECCTTCCC------------CEEEEEECCCSSC-------EEEEEECS
T ss_pred CCCcEEEEEECCCCCEEEEEeCC---CEEEEEeccCCCCC------------eEEEEEeccCCCc-------eEEEEECC
Confidence 88999999999999999999987 56777765321000 0000011112211 22334578
Q ss_pred CCCeEEEEeeCCceEEEEeCCCC--ceeeeeeCCCCcccEEEecCC--CCeEEEEecCCCEEEEEeEecCCCceeeeeee
Q 013578 217 DGSTIIASCSEGTDISIWHGKTG--KLLGNVDTNQLKNNMAAISPN--GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSV 292 (440)
Q Consensus 217 ~~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 292 (440)
++. +|++++.|++|++||..++ +++..+..|...|.+++|+|+ +.+|++|+.|++|++||+..............
T Consensus 164 ~~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~ 242 (330)
T 2hes_X 164 SEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCE 242 (330)
T ss_dssp SSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEE
T ss_pred CCC-EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEe
Confidence 887 9999999999999998766 677888999999999999998 77899999999999999987643222233344
Q ss_pred eeeec-cccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCee-eeeeEEeCC--CCC
Q 013578 293 MQLKG-HKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATL-QYDRLSLSS--DGK 368 (440)
Q Consensus 293 ~~~~~-h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~--~g~ 368 (440)
..+.+ |...|.+++|++++ +|++++.||.|++||..++... .. .....+|.. .|.+++|+| +++
T Consensus 243 ~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~--------~~---~~~~~~h~~~~v~~v~~~~~~~~~ 310 (330)
T 2hes_X 243 AILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWK--------VF---AKRALCHGVYEINVVKWLELNGKT 310 (330)
T ss_dssp EECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEE--------EE---EEESCTTTTSCEEEEEEC-----C
T ss_pred eecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceE--------EE---eccccccccceEEEEEEecCCCce
Confidence 55555 89999999999765 7999999999999998754210 00 001123333 688999999 688
Q ss_pred EEEEec-CCEEEEEEcCC
Q 013578 369 ILAATH-GSTLQWLSVET 385 (440)
Q Consensus 369 ~l~~~~-~~~i~i~d~~~ 385 (440)
+|++|+ |+.|++|++++
T Consensus 311 ~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 311 ILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CEEEEETTSEEEEEEC--
T ss_pred EEEEecCCCcEEEEEecc
Confidence 888765 99999999865
No 65
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=7e-35 Score=257.71 Aligned_cols=286 Identities=17% Similarity=0.242 Sum_probs=203.3
Q ss_pred CCCCCCCCCCcccCcc-----------ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecC
Q 013578 67 SHSHGDKDQNKRHHPL-----------DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINL 135 (440)
Q Consensus 67 ~~~~~~~~~~~~~~~~-----------~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~ 135 (440)
..++++.|+.+++|.. +...+.+|...|++++|+|++.+|++|+.|++|++||+.++. ......
T Consensus 41 ~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~-----~~~~~~ 115 (343)
T 2xzm_R 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT-----TYKRFV 115 (343)
T ss_dssp EEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSC-----EEEEEE
T ss_pred EEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-----EEEEEc
Confidence 4567788888888864 346789999999999999999999999999999999998764 344556
Q ss_pred CCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecc---ccc
Q 013578 136 PPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGA---SAT 212 (440)
Q Consensus 136 ~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 212 (440)
.|...|.+++|+|+++++++++.+ ..+.+|+.......... ....+...+....+.+ ...
T Consensus 116 ~h~~~v~~v~~sp~~~~l~s~~~d---~~i~~wd~~~~~~~~~~--------------~~~~~~~~v~~~~~~~~~~~~~ 178 (343)
T 2xzm_R 116 GHQSEVYSVAFSPDNRQILSAGAE---REIKLWNILGECKFSSA--------------EKENHSDWVSCVRYSPIMKSAN 178 (343)
T ss_dssp CCCSCEEEEEECSSTTEEEEEETT---SCEEEEESSSCEEEECC--------------TTTSCSSCEEEEEECCCCCSCS
T ss_pred CCCCcEEEEEECCCCCEEEEEcCC---CEEEEEeccCCceeeee--------------cccCCCceeeeeeecccccccc
Confidence 788999999999999999999887 56777765422110000 0001111111111100 001
Q ss_pred ccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeee
Q 013578 213 YGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSV 292 (440)
Q Consensus 213 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 292 (440)
...+.+. ++++++.|+.|++|| .+.+....+..|...|.+++|+|+|++|++|+.||.|++||+..... ..
T Consensus 179 ~~~~~~~-~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~-------~~ 249 (343)
T 2xzm_R 179 KVQPFAP-YFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY-------PQ 249 (343)
T ss_dssp CCCSSCC-EEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSS-------CS
T ss_pred ccCCCCC-EEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcc-------cc
Confidence 1122234 899999999999999 45677778889999999999999999999999999999999843321 12
Q ss_pred eeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCcccccc-ccccCCCCCeeeeeeEEeCCCCCEEE
Q 013578 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLP-IPLLDSNGATLQYDRLSLSSDGKILA 371 (440)
Q Consensus 293 ~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~ 371 (440)
..+ .+...|.+++|+|++.++++ +.|+.|++||+.+....... ...... .......++...+.+++|+|+|++|+
T Consensus 250 ~~~-~~~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~ 325 (343)
T 2xzm_R 250 REF-DAGSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVC--TIEAEPITKAEGQKGKNPQCTSLAWNALGKKLF 325 (343)
T ss_dssp EEE-ECSSCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEE--ECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEE
T ss_pred eee-cCCCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceE--EeecCcchhhhhhcCCCCceEEEEECCCCCeEE
Confidence 222 24567999999999987765 46889999999865432100 000000 00112235667799999999999999
Q ss_pred Eec-CCEEEEEEcCCcc
Q 013578 372 ATH-GSTLQWLSVETGK 387 (440)
Q Consensus 372 ~~~-~~~i~i~d~~~~~ 387 (440)
+|+ ||.|++|++++++
T Consensus 326 sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 326 AGFTDGVIRTFSFETSA 342 (343)
T ss_dssp EEETTSEEEEEEEEEEE
T ss_pred EecCCceEEEEEEEccC
Confidence 875 9999999987764
No 66
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=7.2e-35 Score=257.17 Aligned_cols=266 Identities=15% Similarity=0.183 Sum_probs=208.4
Q ss_pred CCCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCC
Q 013578 66 HSHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPP 141 (440)
Q Consensus 66 ~~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v 141 (440)
....+++.|+.+++|.. .+..+..|...|.+++|+|+|++|++|+.|+.|++|++.+.... ........+|.+.|
T Consensus 68 ~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~-~~~~~~~~~h~~~v 146 (340)
T 1got_B 68 RLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN-VRVSRELAGHTGYL 146 (340)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS-CEEEEEEECCSSCE
T ss_pred CEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc-ceeEEEecCCCccE
Confidence 34567778888888864 46678899999999999999999999999999999999875432 23344556788999
Q ss_pred ceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeE
Q 013578 142 TAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTI 221 (440)
Q Consensus 142 ~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (440)
.++.|++++. +++++.+ ..+.+|+........ ....|... ...+.++|++. +
T Consensus 147 ~~~~~~~~~~-l~s~s~d---~~i~~wd~~~~~~~~----------------~~~~h~~~-------v~~~~~~~~~~-~ 198 (340)
T 1got_B 147 SCCRFLDDNQ-IVTSSGD---TTCALWDIETGQQTT----------------TFTGHTGD-------VMSLSLAPDTR-L 198 (340)
T ss_dssp EEEEEEETTE-EEEEETT---SCEEEEETTTTEEEE----------------EECCCSSC-------EEEEEECTTSS-E
T ss_pred EEEEECCCCc-EEEEECC---CcEEEEECCCCcEEE----------------EEcCCCCc-------eEEEEECCCCC-E
Confidence 9999998876 6777766 467777755432110 00111111 12234477887 9
Q ss_pred EEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee--ccc
Q 013578 222 IASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK--GHK 299 (440)
Q Consensus 222 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~h~ 299 (440)
+++++.|+.|++||+++++.+..+..|...|.+++|+|++++|++|+.||.|++||++... .+..+. .+.
T Consensus 199 l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~--------~~~~~~~~~~~ 270 (340)
T 1got_B 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ--------ELMTYSHDNII 270 (340)
T ss_dssp EEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--------EEEEECCTTCC
T ss_pred EEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCc--------EEEEEccCCcc
Confidence 9999999999999999999999999999999999999999999999999999999986543 233332 334
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEE
Q 013578 300 SAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTL 378 (440)
Q Consensus 300 ~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i 378 (440)
..|.+++|+|++++|++|+.|+.|++||+.+.... ....+|...|.+++|+|+|++|++|+ |+.|
T Consensus 271 ~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~--------------~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i 336 (340)
T 1got_B 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA--------------GVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE--------------EEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred cceEEEEECCCCCEEEEECCCCeEEEEEcccCcEe--------------eEeecCCCcEEEEEEcCCCCEEEEEcCCccE
Confidence 57999999999999999999999999999865432 11235677899999999999999876 9999
Q ss_pred EEEE
Q 013578 379 QWLS 382 (440)
Q Consensus 379 ~i~d 382 (440)
++||
T Consensus 337 ~iWd 340 (340)
T 1got_B 337 KIWN 340 (340)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9996
No 67
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-36 Score=289.85 Aligned_cols=259 Identities=22% Similarity=0.314 Sum_probs=209.6
Q ss_pred cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC 163 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~ 163 (440)
+..+.||.+.|++++|+|+|++|++|+.||+|+||++..... ........|.+.|.+++|+++.
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~---~~~~~l~~h~~~V~~l~~s~~~------------- 65 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH---KLIDTLTGHEGPVWRVDWAHPK------------- 65 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE---EEEEEECCCSSCEEEEEECCTT-------------
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC---ccceeccCCcCceEEEEecCCC-------------
Confidence 456889999999999999999999999999999999975432 3455566788999999998761
Q ss_pred eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc--e
Q 013578 164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK--L 241 (440)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~ 241 (440)
+++ ++++|+.||.|++||+.+++ .
T Consensus 66 -----------------------------------------------------~~~-~l~s~s~Dg~I~vwd~~~~~~~~ 91 (753)
T 3jro_A 66 -----------------------------------------------------FGT-ILASCSYDGKVLIWKEENGRWSQ 91 (753)
T ss_dssp -----------------------------------------------------SCS-EEEEEETTSCEEEEEEETTEEEE
T ss_pred -----------------------------------------------------CCC-EEEEEeCCCeEEEEECCCCcccc
Confidence 112 78899999999999999886 6
Q ss_pred eeeeeCCCCcccEEEecCC--CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC----------
Q 013578 242 LGNVDTNQLKNNMAAISPN--GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP---------- 309 (440)
Q Consensus 242 ~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p---------- 309 (440)
+..+..|...|.+++|+|+ +++|++|+.||.|++||++.... .....+.+|...|.+++|+|
T Consensus 92 ~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~------~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~ 165 (753)
T 3jro_A 92 IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT------TSPIIIDAHAIGVNSASWAPATIEEDGEHN 165 (753)
T ss_dssp EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC------CCCEEEECCSSCEEEEEECCCC--------
T ss_pred cccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC------cceeEeecCCCceEEEEecCcccccccccc
Confidence 7778889999999999999 99999999999999999976531 13445678999999999999
Q ss_pred ---CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC---CCEEEEec-CCEEEEEE
Q 013578 310 ---NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD---GKILAATH-GSTLQWLS 382 (440)
Q Consensus 310 ---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~~-~~~i~i~d 382 (440)
++.+|++++.||.|++||+++..... .......+|...|.+++|+|+ +.+|++++ |+.|++||
T Consensus 166 ~~~d~~~l~sgs~dg~I~iwd~~~~~~~~----------~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 166 GTKESRKFVTGGADNLVKIWKYNSDAQTY----------VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp -CGGGCCEEEEETTSCEEEEEEETTTTEE----------EEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred cCCCCCEEEEEECCCeEEEEeccCCcccc----------eeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 58999999999999999998642210 011223456677999999999 88888866 89999999
Q ss_pred cCCcc-----chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 383 VETGK-----VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 383 ~~~~~-----~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
+.+++ ..... ..|.+.|++++|+|++ .+|++|+.||.|++|++...
T Consensus 236 ~~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg--------~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 236 QDNEQGPWKKTLLKE-EKFPDVLWRASWSLSG--------NVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ESSSSSCCBCCBSSS-SCCSSCCCCEEECTTT--------CCEEEECSSSCEECCBCCSS
T ss_pred CCCCCCcceeEEecc-CCCCCceEEEEEcCCC--------CEEEEEcCCCEEEEEecCCC
Confidence 99874 22222 4688999999999998 89999999999999999853
No 68
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.2e-35 Score=267.88 Aligned_cols=307 Identities=10% Similarity=0.129 Sum_probs=227.2
Q ss_pred CCCCCCCCCcccCccc----cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCce
Q 013578 68 HSHGDKDQNKRHHPLD----VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143 (440)
Q Consensus 68 ~~~~~~~~~~~~~~~~----~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~ 143 (440)
..++..++..+.|... ...+.+| ..+....|+|++++|++|+.||.|++||+.++. .......|...|.+
T Consensus 71 l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~ 144 (420)
T 3vl1_A 71 LYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-----QREIDQAHVSEITK 144 (420)
T ss_dssp EEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-----EEEETTSSSSCEEE
T ss_pred EEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-----eeeecccccCccEE
Confidence 3455667777777653 4455566 455566789999999999999999999988653 34555688899999
Q ss_pred EEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEE
Q 013578 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIA 223 (440)
Q Consensus 144 v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 223 (440)
++|+|++++|++++.+ ..+.+|+....... ..+ ..|... ...+.++|+++ +|+
T Consensus 145 ~~~~~~~~~l~s~s~d---~~i~iwd~~~~~~~-------------~~~---~~h~~~-------v~~~~~~~~~~-~l~ 197 (420)
T 3vl1_A 145 LKFFPSGEALISSSQD---MQLKIWSVKDGSNP-------------RTL---IGHRAT-------VTDIAIIDRGR-NVL 197 (420)
T ss_dssp EEECTTSSEEEEEETT---SEEEEEETTTCCCC-------------EEE---ECCSSC-------EEEEEEETTTT-EEE
T ss_pred EEECCCCCEEEEEeCC---CeEEEEeCCCCcCc-------------eEE---cCCCCc-------EEEEEEcCCCC-EEE
Confidence 9999999999999887 56777776543111 001 111111 22334478888 899
Q ss_pred EeeCCceEEEEeCCCCceeeeeeCC------------------------CCcccEEEecCCCCeEEEEecCCCEEEEEeE
Q 013578 224 SCSEGTDISIWHGKTGKLLGNVDTN------------------------QLKNNMAAISPNGRFLAAAAFTADVKVWEIV 279 (440)
Q Consensus 224 s~~~d~~i~vwd~~~~~~~~~~~~~------------------------~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 279 (440)
+++.|+.|++||+++++.+..+..+ ...+.+++|+|++++|++|+.||.|++||++
T Consensus 198 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 277 (420)
T 3vl1_A 198 SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVF 277 (420)
T ss_dssp EEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETT
T ss_pred EEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECC
Confidence 9999999999999999988887643 2455666778999999999999999999997
Q ss_pred ecCCCceeeeeeeeeeeccccceEEEEEcCCCC-EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeee
Q 013578 280 YSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSE-QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQY 358 (440)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 358 (440)
... ........|...|.+++|+|++. +|++++.||.|++||++++... ...+. ..+...+
T Consensus 278 ~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~------~~~~~------~~~~~~v 338 (420)
T 3vl1_A 278 SKE-------QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP------VGEFL------INEGTPI 338 (420)
T ss_dssp TCC-------EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC------SEEEE------ESTTSCE
T ss_pred CCc-------eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc------hhhhh------ccCCCCc
Confidence 654 12223346889999999999998 9999999999999999865321 11110 1133456
Q ss_pred eeEEeCCCCCEEEEec-CCEEEEEEcCCccch---------hhhhccccCCeEEEEecCCCCCCCCCcce---EEEEeeC
Q 013578 359 DRLSLSSDGKILAATH-GSTLQWLSVETGKVL---------DTAEKAHEGEITCMAWAPKTIPMGNQQVS---VLATSSV 425 (440)
Q Consensus 359 ~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~---------~~~~~~h~~~v~~v~~~~~~~~~~~~~~~---~l~t~~~ 425 (440)
..+.+ +++++|++++ |+.|++|++...+.. ..+ ..|.+.|.+++|+|++ . .|++++.
T Consensus 339 ~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~--------~~~g~l~a~g~ 408 (420)
T 3vl1_A 339 NNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFL-VSNDDAVSQFCYVSDD--------ESNGEVLEVGK 408 (420)
T ss_dssp EEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEE-CCSSCCCCEEEEECCS--------SSSCEEEEEET
T ss_pred eEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEE-ccCCcceEEEEEccCC--------CCcceEEEEcC
Confidence 67755 5777888765 899999998874221 122 4688899999999998 5 6777888
Q ss_pred CCeEEEEeCCC
Q 013578 426 DKKVKLWLAPS 436 (440)
Q Consensus 426 Dg~i~vw~~~~ 436 (440)
+|.+.+|++++
T Consensus 409 ~g~~~~~~~~~ 419 (420)
T 3vl1_A 409 NNFCALYNLSN 419 (420)
T ss_dssp TTEEEEEESCC
T ss_pred CceEEEEeccC
Confidence 99999999976
No 69
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.2e-35 Score=259.48 Aligned_cols=295 Identities=14% Similarity=0.092 Sum_probs=221.0
Q ss_pred ccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCC-eEEEEeecCCcc
Q 013578 85 NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNAT-SIVVATHNLSGC 163 (440)
Q Consensus 85 ~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~~~~~~ 163 (440)
....+|.+.|++++|+|++++|++|+.||.|++|++....... .......|...|.+++|+|+++ ++++++.+ .
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g 79 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV--DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ---G 79 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE--EEEEEEECSSCEEEEEEEESSSEEEEEEETT---S
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccc--cceeeeecCCceEEEEECCCCCcEEEEEcCC---C
Confidence 3456899999999999999999999999999999998765221 1223346788999999999999 89998876 4
Q ss_pred eEEeecc-ccccccccccccCCCCCCceeeccccc--ccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC--
Q 013578 164 SLYMYGE-EKAISTNEGKQQSKLPGPEIKWEHHKV--HDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT-- 238 (440)
Q Consensus 164 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~-- 238 (440)
.+.+|+. ..... .. ... +...+. .+.+++ +. ++++++.|+.|++||+++
T Consensus 80 ~i~~wd~~~~~~~--------------~~---~~~~~~~~~v~-------~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~ 133 (342)
T 1yfq_A 80 EILKVDLIGSPSF--------------QA---LTNNEANLGIC-------RICKYG-DD-KLIAASWDGLIEVIDPRNYG 133 (342)
T ss_dssp CEEEECSSSSSSE--------------EE---CBSCCCCSCEE-------EEEEET-TT-EEEEEETTSEEEEECHHHHT
T ss_pred eEEEEEeccCCce--------------Ee---ccccCCCCceE-------EEEeCC-CC-EEEEEcCCCeEEEEcccccc
Confidence 6777776 44311 00 011 111111 222355 55 899999999999999987
Q ss_pred -------CceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEe-cCCCceeeeeeeeeeeccccceEEEEEcC-
Q 013578 239 -------GKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVY-SKDGLVKAVTSVMQLKGHKSAVTWLCFAP- 309 (440)
Q Consensus 239 -------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~p- 309 (440)
++++..+. +...+.+++|++++ +++++.|+.|++||++. ... ........|...|.+++|+|
T Consensus 134 ~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~------~~~~~~~~~~~~i~~i~~~~~ 204 (342)
T 1yfq_A 134 DGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDD------NGTIEESGLKYQIRDVALLPK 204 (342)
T ss_dssp TBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTC------CCEEEECSCSSCEEEEEECSG
T ss_pred cccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccc------cceeeecCCCCceeEEEECCC
Confidence 77776666 77889999999987 99999999999999976 331 01223446888999999999
Q ss_pred CCCEEEEEeCCCcEEEEecCcc--ccccCCCCcccccccc--ccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcC
Q 013578 310 NSEQIITASKDGTLRVWNINVR--YHLDEDPKTLKVLPIP--LLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVE 384 (440)
Q Consensus 310 ~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~ 384 (440)
++.+|++++.||.|++|+++.. .... .....+... ......+...|.+++|+|++++|++++ |+.|++||+.
T Consensus 205 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 205 EQEGYACSSIDGRVAVEFFDDQGDDYNS---SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp GGCEEEEEETTSEEEEEECCTTCCSTTC---TTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred CCCEEEEEecCCcEEEEEEcCCCccccc---ccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCc
Confidence 9999999999999999999864 1000 011111100 001113345799999999999998876 8999999999
Q ss_pred Cccchhhhhccc-cCCeEEEEecCCCCCCCCCcceEEEEeeCCCe-EEEEe
Q 013578 385 TGKVLDTAEKAH-EGEITCMAWAPKTIPMGNQQVSVLATSSVDKK-VKLWL 433 (440)
Q Consensus 385 ~~~~~~~~~~~h-~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~-i~vw~ 433 (440)
+++.+..+ .+| .+.|++++ |++ .+|++++.||. .+.|.
T Consensus 282 ~~~~~~~~-~~~h~~~v~~~~--~~~--------~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 282 TRKKIKNF-AKFNEDSVVKIA--CSD--------NILCLATSDDTFKTNAA 321 (342)
T ss_dssp TTEEEEEC-CCCSSSEEEEEE--ECS--------SEEEEEEECTHHHHCSS
T ss_pred cHhHhhhh-hcccCCCceEec--CCC--------CeEEEEecCCccccccc
Confidence 99998888 477 99999999 887 89999999999 44444
No 70
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.4e-34 Score=265.48 Aligned_cols=286 Identities=19% Similarity=0.257 Sum_probs=218.5
Q ss_pred ccccccccCcce-eEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578 83 DVNTLKGHGDSV-TGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS 161 (440)
Q Consensus 83 ~~~~l~~H~~~V-~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~ 161 (440)
....+.+|.+.| .++.+ ++++|++|+.||+|++||+.++. ......+|.+.|.+++|++++ .+++++.+
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~-----~~~~~~~h~~~V~~l~~~~~~-~l~s~s~d-- 182 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK-----FLLQLSGHDGGVWALKYAHGG-ILVSGSTD-- 182 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEECSTT-EEEEEETT--
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCc-----EEEEEeCCCcCEEEEEEcCCC-EEEEEeCC--
Confidence 356789998885 66666 67899999999999999998764 445566899999999999988 78888776
Q ss_pred cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578 162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL 241 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 241 (440)
..+.+|+......... ...|...+....+ ...+++. ++++++.|+.|++||+.++..
T Consensus 183 -g~i~vwd~~~~~~~~~----------------~~~h~~~v~~l~~-----~~~~~~~-~l~s~s~d~~i~vwd~~~~~~ 239 (464)
T 3v7d_B 183 -RTVRVWDIKKGCCTHV----------------FEGHNSTVRCLDI-----VEYKNIK-YIVTGSRDNTLHVWKLPKESS 239 (464)
T ss_dssp -SCEEEEETTTTEEEEE----------------ECCCSSCEEEEEE-----EESSSCE-EEEEEETTSCEEEEECCCCCC
T ss_pred -CCEEEEECCCCcEEEE----------------ECCCCCccEEEEE-----ecCCCCC-EEEEEcCCCcEEEeeCCCCcc
Confidence 5677776654321110 0111111111111 0123444 899999999999999987653
Q ss_pred -----------------------eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc
Q 013578 242 -----------------------LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH 298 (440)
Q Consensus 242 -----------------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h 298 (440)
+..+..|...+.++ ++++++|++|+.||.|++||++..+ .+..+.+|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~--------~~~~~~~~ 309 (464)
T 3v7d_B 240 VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMK--------CLYILSGH 309 (464)
T ss_dssp C------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTE--------EEEEECCC
T ss_pred cccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCc--------EEEEecCC
Confidence 34455666666554 7889999999999999999996554 67778899
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCE
Q 013578 299 KSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGST 377 (440)
Q Consensus 299 ~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~ 377 (440)
...|.+++|+|++++|++++.||.|++||++++..+. ...+|...|.+++|+ +.+|+++ .|+.
T Consensus 310 ~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~--------------~~~~h~~~v~~~~~~--~~~l~s~s~dg~ 373 (464)
T 3v7d_B 310 TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY--------------TLQGHTALVGLLRLS--DKFLVSAAADGS 373 (464)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE--------------EECCCSSCEEEEEEC--SSEEEEEETTSE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE--------------EEeCCCCcEEEEEEc--CCEEEEEeCCCc
Confidence 9999999999999999999999999999998765432 223556678899997 4677765 5999
Q ss_pred EEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 378 LQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 378 i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
|++||+.+++..... .|...+..++|++++ .+|++|+ ||.|++||+.+++
T Consensus 374 v~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~--------~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 374 IRGWDANDYSRKFSY--HHTNLSAITTFYVSD--------NILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp EEEEETTTCCEEEEE--ECTTCCCEEEEEECS--------SEEEEEE-TTEEEEEETTTCC
T ss_pred EEEEECCCCceeeee--cCCCCccEEEEEeCC--------CEEEEec-CCeEEEEECCCCc
Confidence 999999998876655 377788899999998 7888888 9999999999876
No 71
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.3e-34 Score=257.31 Aligned_cols=268 Identities=15% Similarity=0.207 Sum_probs=193.0
Q ss_pred CCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccC
Q 013578 136 PPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGT 215 (440)
Q Consensus 136 ~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (440)
.|...|.+++|+|++++|++++. ..+.+|+............................ .........+.++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~~----~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~v~~v~~s 132 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGCN----KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSS-----PSSDLYIRSVCFS 132 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEECB----SCEEEEETTTCCEEEEECC----------------------CCCCBEEEEEEC
T ss_pred CCCCEEEEEEECCCCCEEEEEcC----CcEEEEEecCCCEEEEecCcccccccccccccccc-----CCCceeEEEEEEC
Confidence 57899999999999999998763 24566654432211110000000000000000000 0000012345568
Q ss_pred CCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee
Q 013578 216 ADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL 295 (440)
Q Consensus 216 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 295 (440)
|+++ +|++++.|+.|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.|++||++.+. ....+
T Consensus 133 ~dg~-~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~--------~~~~~ 203 (393)
T 1erj_A 133 PDGK-FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ--------CSLTL 203 (393)
T ss_dssp TTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--------EEEEE
T ss_pred CCCC-EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe--------eEEEE
Confidence 8988 89999999999999999999999999999999999999999999999999999999986553 33334
Q ss_pred eccccceEEEEEcC-CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec
Q 013578 296 KGHKSAVTWLCFAP-NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH 374 (440)
Q Consensus 296 ~~h~~~v~~~~~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 374 (440)
. +...+.+++|+| ++.+|++++.|+.|++||++++..+.. +........+|...|.+++|+|+|++|++|+
T Consensus 204 ~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~-------~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s 275 (393)
T 1erj_A 204 S-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER-------LDSENESGTGHKDSVYSVVFTRDGQSVVSGS 275 (393)
T ss_dssp E-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEE-------EC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred E-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEe-------ecccccCCCCCCCCEEEEEECCCCCEEEEEe
Confidence 3 567899999999 899999999999999999987644321 1111122246677899999999999999876
Q ss_pred -CCEEEEEEcCCcc------------chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 375 -GSTLQWLSVETGK------------VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 375 -~~~i~i~d~~~~~------------~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
|+.|++||+.+.. +...+ .+|...|.+++|+|++ .+|++|+.||.|++||+.+++
T Consensus 276 ~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~--------~~l~sgs~D~~v~iwd~~~~~ 343 (393)
T 1erj_A 276 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTY-IGHKDFVLSVATTQND--------EYILSGSKDRGVLFWDKKSGN 343 (393)
T ss_dssp TTSEEEEEEC---------------CEEEEE-ECCSSCEEEEEECGGG--------CEEEEEETTSEEEEEETTTCC
T ss_pred CCCEEEEEECCCCCCcccccCCCCCcceEEE-ecccCcEEEEEECCCC--------CEEEEEeCCCeEEEEECCCCe
Confidence 8999999997643 22334 4799999999999998 899999999999999998875
No 72
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=258.13 Aligned_cols=302 Identities=12% Similarity=0.140 Sum_probs=218.6
Q ss_pred cccccccccCcceeEEEEccC---CCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEee
Q 013578 82 LDVNTLKGHGDSVTGLCFSSD---GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATH 158 (440)
Q Consensus 82 ~~~~~l~~H~~~V~~l~~s~d---g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~ 158 (440)
..+..+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+.... .......|...|.+++|+|++++|++++.
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT---IPKAQQMHTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE---EEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce---eEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence 456788999999999999999 699999999999999999873322 22444568899999999999999999987
Q ss_pred cCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeeccccccc--CCCCCeEEEEeeCCceEEEEeC
Q 013578 159 NLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYG--TADGSTIIASCSEGTDISIWHG 236 (440)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~d~~i~vwd~ 236 (440)
+ ..+.+|+........ ...+.. ....+.+ ++++. ++++++.|+.|++||+
T Consensus 107 d---g~v~iwd~~~~~~~~-----------------~~~~~~-------~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~ 158 (368)
T 3mmy_A 107 D---KTAKMWDLSSNQAIQ-----------------IAQHDA-------PVKTIHWIKAPNYS-CVMTGSWDKTLKFWDT 158 (368)
T ss_dssp T---SEEEEEETTTTEEEE-----------------EEECSS-------CEEEEEEEECSSCE-EEEEEETTSEEEEECS
T ss_pred C---CcEEEEEcCCCCcee-----------------eccccC-------ceEEEEEEeCCCCC-EEEEccCCCcEEEEEC
Confidence 7 567777765432110 001111 1112223 56665 8999999999999999
Q ss_pred CCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCE---
Q 013578 237 KTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQ--- 313 (440)
Q Consensus 237 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~--- 313 (440)
++++.+..+..+. .+.++.+ .+..+++++.++.+++|+++... ....... ..+...+.++.+.++...
T Consensus 159 ~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 229 (368)
T 3mmy_A 159 RSSNPMMVLQLPE-RCYCADV--IYPMAVVATAERGLIVYQLENQP----SEFRRIE--SPLKHQHRCVAIFKDKQNKPT 229 (368)
T ss_dssp SCSSCSEEEECSS-CEEEEEE--ETTEEEEEEGGGCEEEEECSSSC----EEEEECC--CSCSSCEEEEEEEECTTSCEE
T ss_pred CCCcEEEEEecCC-CceEEEe--cCCeeEEEeCCCcEEEEEecccc----chhhhcc--ccccCCCceEEEcccCCCCCC
Confidence 9999988887764 3444444 45688999999999999986543 1111222 223445566666665544
Q ss_pred -EEEEeCCCcEEEEecCccccccCCCCccccccc-----cccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCc
Q 013578 314 -IITASKDGTLRVWNINVRYHLDEDPKTLKVLPI-----PLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETG 386 (440)
Q Consensus 314 -l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~ 386 (440)
+++++.||.|++||++...... ....+.. .......+...|.+++|+|++++|++++ |+.|++||+.++
T Consensus 230 ~~~~~~~dg~i~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 305 (368)
T 3mmy_A 230 GFALGSIEGRVAIHYINPPNPAK----DNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR 305 (368)
T ss_dssp EEEEEETTSEEEEEESSCSCHHH----HSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred eEEEecCCCcEEEEecCCCCccc----cceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC
Confidence 9999999999999998653210 0000000 0011122233699999999999999875 899999999999
Q ss_pred cchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 387 KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 387 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
+.+..+ .+|...|++++|+|++ .+|++++.|+..+.|++-.
T Consensus 306 ~~~~~~-~~~~~~v~~~~~s~~g--------~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 306 TKLKTS-EQLDQPISACCFNHNG--------NIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EEEEEC-CCCSSCEEEEEECTTS--------SCEEEEECCCSTTCGGGCC
T ss_pred cEEEEe-cCCCCCceEEEECCCC--------CeEEEEecccccccccccC
Confidence 999888 5899999999999998 8999999998776666544
No 73
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.2e-35 Score=261.60 Aligned_cols=283 Identities=13% Similarity=0.182 Sum_probs=211.8
Q ss_pred CCCCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCc--ceeeEEecCCCC
Q 013578 65 PHSHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSK--SFKFLRINLPPG 138 (440)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~--~~~~~~~~~~~~ 138 (440)
....++++.|+.+++|.. .+..+.+|...|.+++|+|+|++|++|+.|+.+++|++...... .........+|.
T Consensus 78 ~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~ 157 (380)
T 3iz6_a 78 KNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHK 157 (380)
T ss_dssp SSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCS
T ss_pred CCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCC
Confidence 344677888999999965 46788999999999999999999999999999999999754311 122334566788
Q ss_pred CCCceEEEccCC-CeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCC-
Q 013578 139 GPPTAVAFADNA-TSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA- 216 (440)
Q Consensus 139 ~~v~~v~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 216 (440)
+.+.++.|+|++ ..+++++.| ..+.+|+............ .....|...+... .+.+
T Consensus 158 ~~v~~~~~~~~~~~~l~s~s~D---~~i~~wd~~~~~~~~~~~~-----------~~~~~h~~~v~~~-------~~~~~ 216 (380)
T 3iz6_a 158 GYASSCQYVPDQETRLITGSGD---QTCVLWDVTTGQRISIFGS-----------EFPSGHTADVLSL-------SINSL 216 (380)
T ss_dssp SCCCCCBCCSSSSSCEEEECTT---SCEEEECTTTCCEEEEECC-----------CSSSSCCSCEEEE-------EECSS
T ss_pred cceEEEEEecCCCCEEEEECCC---CcEEEEEcCCCcEEEEeec-----------ccCCCCccCeEEE-------EeecC
Confidence 999999999975 458888776 5778887655421111000 0001122222211 1233
Q ss_pred CCCeEEEEeeCCceEEEEeCC-CCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee
Q 013578 217 DGSTIIASCSEGTDISIWHGK-TGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL 295 (440)
Q Consensus 217 ~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 295 (440)
++. ++++|+.|++|++||++ .++.+..+.+|...|.+++|+|++++|++|+.||+|++||++.+. .+..+
T Consensus 217 ~~~-~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~--------~~~~~ 287 (380)
T 3iz6_a 217 NAN-MFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH--------QLQVY 287 (380)
T ss_dssp SCC-EEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTE--------EEEEE
T ss_pred CCC-EEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCc--------EEEEe
Confidence 444 99999999999999998 457788899999999999999999999999999999999997654 33333
Q ss_pred ecc-------ccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC
Q 013578 296 KGH-------KSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK 368 (440)
Q Consensus 296 ~~h-------~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 368 (440)
..+ ...|++++|+|+|++|++|+.||.|++||+..+..... + .....+|...|.+++|+|+|+
T Consensus 288 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~-------~---~~~~~~h~~~v~~l~~s~dg~ 357 (380)
T 3iz6_a 288 NREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLN-------L---GTLQNSHEGRISCLGLSSDGS 357 (380)
T ss_dssp CCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEE-------E---CCSCSSCCCCCCEEEECSSSS
T ss_pred cccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEE-------E---ecccCCCCCceEEEEECCCCC
Confidence 322 23589999999999999999999999999976543211 0 011245677899999999999
Q ss_pred EEEEec-CCEEEEEEcCCcc
Q 013578 369 ILAATH-GSTLQWLSVETGK 387 (440)
Q Consensus 369 ~l~~~~-~~~i~i~d~~~~~ 387 (440)
+|++|+ |+.|++|++...+
T Consensus 358 ~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 358 ALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEEEECTTSCEEEEECCSSS
T ss_pred EEEEeeCCCCEEEEecCCCc
Confidence 999987 9999999987664
No 74
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.6e-35 Score=264.99 Aligned_cols=270 Identities=14% Similarity=0.165 Sum_probs=213.5
Q ss_pred CCCCCCCcccCcc--------ccccccccCcceeEEEEcc-CCCEEEEeeCCCcEEEEecCCCCCcc--eeeEEecCCCC
Q 013578 70 HGDKDQNKRHHPL--------DVNTLKGHGDSVTGLCFSS-DGKCLATACADGVIRVHKLDDASSKS--FKFLRINLPPG 138 (440)
Q Consensus 70 ~~~~~~~~~~~~~--------~~~~l~~H~~~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~~--~~~~~~~~~~~ 138 (440)
.+..++.+.+|+. .+..+.+|.+.|++++|+| ++++|++|+.||+|+||++.++.... .........|.
T Consensus 52 ~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~ 131 (402)
T 2aq5_A 52 EASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT 131 (402)
T ss_dssp CCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCS
T ss_pred EEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCC
Confidence 4566677777653 3556889999999999999 99999999999999999998764210 01233445677
Q ss_pred CCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCC
Q 013578 139 GPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADG 218 (440)
Q Consensus 139 ~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (440)
..|.+++|+|++..
T Consensus 132 ~~v~~~~~~p~~~~------------------------------------------------------------------ 145 (402)
T 2aq5_A 132 KRVGIVAWHPTAQN------------------------------------------------------------------ 145 (402)
T ss_dssp SCEEEEEECSSBTT------------------------------------------------------------------
T ss_pred CeEEEEEECcCCCC------------------------------------------------------------------
Confidence 88999999887521
Q ss_pred CeEEEEeeCCceEEEEeCCCCceeeee--eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee-
Q 013578 219 STIIASCSEGTDISIWHGKTGKLLGNV--DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL- 295 (440)
Q Consensus 219 ~~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~- 295 (440)
++++++.|+.|++||+.+++.+..+ ..|...+.+++|+|++++|++++.||.|++||++.+. .+..+
T Consensus 146 --~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~ 215 (402)
T 2aq5_A 146 --VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT--------VVAEKD 215 (402)
T ss_dssp --EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE--------EEEEEE
T ss_pred --EEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc--------eeeeec
Confidence 7888899999999999999999888 7889999999999999999999999999999987654 45566
Q ss_pred eccccc-eEEEEEcCCCCEEEEE---eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE
Q 013578 296 KGHKSA-VTWLCFAPNSEQIITA---SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA 371 (440)
Q Consensus 296 ~~h~~~-v~~~~~~p~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 371 (440)
.+|.+. +.++.|+|++.+|+++ +.|+.|++||+++.... ... . ...+...+..++|+|++++|+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~------~~~-----~-~~~~~~~v~~~~~s~~~~~l~ 283 (402)
T 2aq5_A 216 RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP------LSL-----Q-ELDTSSGVLLPFFDPDTNIVY 283 (402)
T ss_dssp CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSC------SEE-----E-ECCCCSSCEEEEEETTTTEEE
T ss_pred cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCC------ceE-----E-eccCCCceeEEEEcCCCCEEE
Confidence 678776 8999999999999999 78999999999865321 000 0 112334578899999999886
Q ss_pred -Eec-CCEEEEEEcCCccc-hhhhhcc--ccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 372 -ATH-GSTLQWLSVETGKV-LDTAEKA--HEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 372 -~~~-~~~i~i~d~~~~~~-~~~~~~~--h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
+|. |+.|++||+.+++. +..+ .. |...|.+++|+|++ .+++ +.|+.+++|++.+++
T Consensus 284 ~~g~~dg~i~i~d~~~~~~~~~~l-~~~~~~~~v~~~~~sp~~--------~~~~--s~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 284 LCGKGDSSIRYFEITSEAPFLHYL-SMFSSKESQRGMGYMPKR--------GLEV--NKCEIARFYKLHERK 344 (402)
T ss_dssp EEETTCSCEEEEEECSSTTCEEEE-EEECCSSCCSEEEECCGG--------GSCG--GGTEEEEEEEEETTE
T ss_pred EEEcCCCeEEEEEecCCCcceEee-cccccCCcccceEEeccc--------ccce--ecceeEEEEEcCCCc
Confidence 454 89999999999884 3333 23 56899999999997 6665 357799999987653
No 75
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.8e-33 Score=258.11 Aligned_cols=280 Identities=23% Similarity=0.346 Sum_probs=218.3
Q ss_pred ccccccccCcce-eEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578 83 DVNTLKGHGDSV-TGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS 161 (440)
Q Consensus 83 ~~~~l~~H~~~V-~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~ 161 (440)
....+.+|.+.| .+ ++++|++|++|+.||+|++||+.++. ......+|...|.+++|+ +..+++++.+
T Consensus 110 ~~~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~~~~~--~~~l~s~~~d-- 178 (445)
T 2ovr_B 110 SPKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGK-----CLRTLVGHTGGVWSSQMR--DNIIISGSTD-- 178 (445)
T ss_dssp CCEEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCC-----EEEECCCCSSCEEEEEEE--TTEEEEEETT--
T ss_pred eeEEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCc-----EEEEEcCCCCCEEEEEec--CCEEEEEeCC--
Confidence 456789999875 55 44578999999999999999998764 445566888999999997 5688888877
Q ss_pred cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578 162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL 241 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 241 (440)
..+.+|+......... ...+...+.... .++. .+++++.|+.|++||+.+++.
T Consensus 179 -g~i~vwd~~~~~~~~~----------------~~~h~~~v~~~~---------~~~~-~l~s~s~dg~i~~wd~~~~~~ 231 (445)
T 2ovr_B 179 -RTLKVWNAETGECIHT----------------LYGHTSTVRCMH---------LHEK-RVVSGSRDATLRVWDIETGQC 231 (445)
T ss_dssp -SCEEEEETTTTEEEEE----------------ECCCSSCEEEEE---------EETT-EEEEEETTSEEEEEESSSCCE
T ss_pred -CeEEEEECCcCcEEEE----------------ECCCCCcEEEEE---------ecCC-EEEEEeCCCEEEEEECCCCcE
Confidence 4677776544321110 011111111111 1234 799999999999999999999
Q ss_pred eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC
Q 013578 242 LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG 321 (440)
Q Consensus 242 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg 321 (440)
+..+..|...+.++.+ +++++++|+.||.|++||++... .+..+.+|...|.+++| ++.+|++++.|+
T Consensus 232 ~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~ 299 (445)
T 2ovr_B 232 LHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETET--------CLHTLQGHTNRVYSLQF--DGIHVVSGSLDT 299 (445)
T ss_dssp EEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTE--------EEEEECCCSSCEEEEEE--CSSEEEEEETTS
T ss_pred EEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCc--------EeEEecCCCCceEEEEE--CCCEEEEEeCCC
Confidence 9999999999999998 78999999999999999987654 67778899999999999 788999999999
Q ss_pred cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhc--cccC
Q 013578 322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEK--AHEG 398 (440)
Q Consensus 322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~--~h~~ 398 (440)
.|++||++++..+. ...++...+.++.+ ++.++++++ |+.|++||+.+++.+..+.. .|..
T Consensus 300 ~i~i~d~~~~~~~~--------------~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 363 (445)
T 2ovr_B 300 SIRVWDVETGNCIH--------------TLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQS 363 (445)
T ss_dssp CEEEEETTTCCEEE--------------EECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSS
T ss_pred eEEEEECCCCCEEE--------------EEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCC
Confidence 99999998764431 11234445666665 566777765 89999999999998877731 3888
Q ss_pred CeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 399 EITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 399 ~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
.|++++|++ .+|++|+.||.|++|++.+++
T Consensus 364 ~v~~~~~~~----------~~l~s~~~dg~v~iwd~~~~~ 393 (445)
T 2ovr_B 364 AVTCLQFNK----------NFVITSSDDGTVKLWDLKTGE 393 (445)
T ss_dssp CEEEEEECS----------SEEEEEETTSEEEEEETTTCC
T ss_pred CEEEEEECC----------CEEEEEeCCCeEEEEECCCCc
Confidence 999999975 589999999999999999875
No 76
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=9e-34 Score=260.05 Aligned_cols=299 Identities=14% Similarity=0.219 Sum_probs=233.9
Q ss_pred CCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCce
Q 013578 68 HSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143 (440)
Q Consensus 68 ~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~ 143 (440)
..++..++.++.|.. .+..+.+|.+.|++++|+ +++|++|+.||+|++||+.+++ .......|...|.+
T Consensus 132 l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~ 204 (445)
T 2ovr_B 132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGE-----CIHTLYGHTSTVRC 204 (445)
T ss_dssp EEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEE
T ss_pred EEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCc-----EEEEECCCCCcEEE
Confidence 345667888888864 467889999999999997 6799999999999999998764 34555678889999
Q ss_pred EEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEE
Q 013578 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIA 223 (440)
Q Consensus 144 v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 223 (440)
++|+ +..+++++.+ ..+.+|+......... ...+...+.. +. .++. +++
T Consensus 205 ~~~~--~~~l~s~s~d---g~i~~wd~~~~~~~~~----------------~~~~~~~v~~-------~~--~~~~-~l~ 253 (445)
T 2ovr_B 205 MHLH--EKRVVSGSRD---ATLRVWDIETGQCLHV----------------LMGHVAAVRC-------VQ--YDGR-RVV 253 (445)
T ss_dssp EEEE--TTEEEEEETT---SEEEEEESSSCCEEEE----------------EECCSSCEEE-------EE--ECSS-CEE
T ss_pred EEec--CCEEEEEeCC---CEEEEEECCCCcEEEE----------------EcCCcccEEE-------EE--ECCC-EEE
Confidence 9995 5678888877 5677776554311100 0111111111 11 1455 899
Q ss_pred EeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceE
Q 013578 224 SCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVT 303 (440)
Q Consensus 224 s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~ 303 (440)
+++.|+.|++||+.+++.+..+..|...+.++.| +++++++|+.||.|++||++.++ .+..+.+|...+.
T Consensus 254 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~--------~~~~~~~~~~~v~ 323 (445)
T 2ovr_B 254 SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGN--------CIHTLTGHQSLTS 323 (445)
T ss_dssp EEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCC--------EEEEECCCCSCEE
T ss_pred EEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCC--------EEEEEcCCcccEE
Confidence 9999999999999999999999999999999998 88999999999999999997665 6777889999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEE
Q 013578 304 WLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLS 382 (440)
Q Consensus 304 ~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d 382 (440)
++.+ ++.+|++++.||.|++||++++..+.. ......+...|.+++|+ +.+|++|+ ||.|++||
T Consensus 324 ~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~-----------~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd 388 (445)
T 2ovr_B 324 GMEL--KDNILVSGNADSTVKIWDIKTGQCLQT-----------LQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD 388 (445)
T ss_dssp EEEE--ETTEEEEEETTSCEEEEETTTCCEEEE-----------ECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred EEEE--eCCEEEEEeCCCeEEEEECCCCcEEEE-----------EccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence 9888 466999999999999999986643321 11122355678889995 57777765 89999999
Q ss_pred cCCccchhhhh----ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCe----EEEEeCCCC
Q 013578 383 VETGKVLDTAE----KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKK----VKLWLAPSL 437 (440)
Q Consensus 383 ~~~~~~~~~~~----~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~----i~vw~~~~~ 437 (440)
+.+++.+..+. .+|.+.|++++|+|++ .+|++|+.||+ |.|||+...
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--------~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 389 LKTGEFIRNLVTLESGGSGGVVWRIRASNTK--------LVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp TTTCCEEEEEEECTTGGGTCEEEEEEECSSE--------EEEEEECSSSSSCCEEEEEECCCC
T ss_pred CCCCceeeeeeccccCCCCceEEEEEecCCE--------EEEEEcccCCCCccEEEEEECCCC
Confidence 99999877662 3688899999999998 89999999998 999999753
No 77
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6.7e-34 Score=252.12 Aligned_cols=268 Identities=13% Similarity=0.149 Sum_probs=207.2
Q ss_pred CCCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcc-eeeEEecCCCCCC
Q 013578 66 HSHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKS-FKFLRINLPPGGP 140 (440)
Q Consensus 66 ~~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~-~~~~~~~~~~~~~ 140 (440)
...++++.|+.+++|.. ..+.+..|...|.+++|+|+|.+|++|+.|+.+++|++....... .........|...
T Consensus 77 ~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~ 156 (354)
T 2pbi_B 77 RRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNY 156 (354)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSC
T ss_pred CEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCc
Confidence 34577788999999864 456778899999999999999999999999999999987542211 1122233467889
Q ss_pred CceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCC--CC
Q 013578 141 PTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA--DG 218 (440)
Q Consensus 141 v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 218 (440)
|.+++|+|++..+++++.+ ..+.+|+........ ....|...+.. ..+.+ ++
T Consensus 157 v~~~~~~~~~~~l~t~s~D---~~v~lwd~~~~~~~~----------------~~~~h~~~v~~-------~~~~~~~~g 210 (354)
T 2pbi_B 157 LSACSFTNSDMQILTASGD---GTCALWDVESGQLLQ----------------SFHGHGADVLC-------LDLAPSETG 210 (354)
T ss_dssp EEEEEECSSSSEEEEEETT---SEEEEEETTTCCEEE----------------EEECCSSCEEE-------EEECCCSSC
T ss_pred EEEEEEeCCCCEEEEEeCC---CcEEEEeCCCCeEEE----------------EEcCCCCCeEE-------EEEEeCCCC
Confidence 9999999999999999987 577788765432110 00111111111 11233 44
Q ss_pred CeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee--
Q 013578 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK-- 296 (440)
Q Consensus 219 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-- 296 (440)
. ++++|+.|+.|++||+++++++..+..|...|.+++|+|++++|++|+.|+.|++||++... .+..+.
T Consensus 211 ~-~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~--------~~~~~~~~ 281 (354)
T 2pbi_B 211 N-TFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR--------EVAIYSKE 281 (354)
T ss_dssp C-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--------EEEEECCT
T ss_pred C-EEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--------EEEEEcCC
Confidence 5 89999999999999999999999999999999999999999999999999999999986543 233333
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-C
Q 013578 297 GHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-G 375 (440)
Q Consensus 297 ~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~ 375 (440)
.+...+.+++|+|++.+|++++.|++|++||+.++..+ ....+|...|.+++|+|+|++|++|+ |
T Consensus 282 ~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~--------------~~l~~h~~~v~~l~~spdg~~l~sgs~D 347 (354)
T 2pbi_B 282 SIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRV--------------SILFGHENRVSTLRVSPDGTAFCSGSWD 347 (354)
T ss_dssp TCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEE--------------EEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred CcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceE--------------EEEECCCCcEEEEEECCCCCEEEEEcCC
Confidence 23457899999999999999999999999999865432 12236677899999999999999876 8
Q ss_pred CEEEEEE
Q 013578 376 STLQWLS 382 (440)
Q Consensus 376 ~~i~i~d 382 (440)
+.|++|+
T Consensus 348 ~~v~vW~ 354 (354)
T 2pbi_B 348 HTLRVWA 354 (354)
T ss_dssp SEEEEEC
T ss_pred CCEEecC
Confidence 9999995
No 78
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=4.4e-34 Score=261.16 Aligned_cols=276 Identities=16% Similarity=0.287 Sum_probs=211.7
Q ss_pred cccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceE
Q 013578 86 TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSL 165 (440)
Q Consensus 86 ~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~ 165 (440)
...+|...|.|+++ ++++|++|+.||+|++||+.+++ ......+|...|.+++| +++.+++++.+ ..+
T Consensus 128 ~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~l~~--~~~~l~sg~~d---g~i 195 (435)
T 1p22_A 128 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE-----CKRILTGHTGSVLCLQY--DERVIITGSSD---STV 195 (435)
T ss_dssp CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC-----EEEEECCCSSCEEEEEC--CSSEEEEEETT---SCE
T ss_pred cccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe-----EEEEEcCCCCcEEEEEE--CCCEEEEEcCC---CeE
Confidence 34467788999988 79999999999999999998764 34556678899999999 78899998877 467
Q ss_pred EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee---
Q 013578 166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL--- 242 (440)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~--- 242 (440)
.+|+......... ...+...+.. +.+ ++. .+++++.|+.|++||+.+++..
T Consensus 196 ~vwd~~~~~~~~~----------------~~~h~~~v~~-------l~~--~~~-~l~s~s~dg~i~vwd~~~~~~~~~~ 249 (435)
T 1p22_A 196 RVWDVNTGEMLNT----------------LIHHCEAVLH-------LRF--NNG-MMVTCSKDRSIAVWDMASPTDITLR 249 (435)
T ss_dssp EEEESSSCCEEEE----------------ECCCCSCEEE-------EEC--CTT-EEEEEETTSCEEEEECSSSSCCEEE
T ss_pred EEEECCCCcEEEE----------------EcCCCCcEEE-------EEE--cCC-EEEEeeCCCcEEEEeCCCCCCceee
Confidence 7776554321100 0111111111 111 233 8999999999999999988765
Q ss_pred eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCc
Q 013578 243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGT 322 (440)
Q Consensus 243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~ 322 (440)
..+..|...+.++++ ++++|++|+.||.|++||++.+. .+..+.+|...|.+++| ++.+|++|+.||.
T Consensus 250 ~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~--------~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~ 317 (435)
T 1p22_A 250 RVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCE--------FVRTLNGHKRGIACLQY--RDRLVVSGSSDNT 317 (435)
T ss_dssp EEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCC--------EEEEEECCSSCEEEEEE--ETTEEEEEETTSC
T ss_pred eEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCc--------EEEEEcCCCCcEEEEEe--CCCEEEEEeCCCe
Confidence 667788889999988 78999999999999999987655 67788899999999999 4679999999999
Q ss_pred EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCcc---------chhhh
Q 013578 323 LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGK---------VLDTA 392 (440)
Q Consensus 323 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~---------~~~~~ 392 (440)
|++||++++..+. ...+|...|.+++| ++.+|++|+ ||.|++||+.+++ .+..+
T Consensus 318 i~iwd~~~~~~~~--------------~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 381 (435)
T 1p22_A 318 IRLWDIECGACLR--------------VLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL 381 (435)
T ss_dssp EEEEETTTCCEEE--------------EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE
T ss_pred EEEEECCCCCEEE--------------EEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeec
Confidence 9999998764431 12345666888888 778888765 8999999998776 55556
Q ss_pred hccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 393 EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 393 ~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
.+|.+.|++++| ++ .+|++|+.||.|++||+.+.+
T Consensus 382 -~~h~~~v~~l~~--~~--------~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 382 -VEHSGRVFRLQF--DE--------FQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp -CCCSSCCCCEEE--CS--------SCEEECCSSSEEEEEC-----
T ss_pred -cCCCCCeEEEEe--CC--------CEEEEEeCCCEEEEEECCCCC
Confidence 589999999999 44 689999999999999997654
No 79
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=3.3e-34 Score=261.25 Aligned_cols=258 Identities=16% Similarity=0.226 Sum_probs=202.9
Q ss_pred cccccccCcceeEEEEccC-CCEEEEeeCCCcEEEEecCCCCCc-----ceeeEEecCCCCCCCceEEEccCCCeEEEEe
Q 013578 84 VNTLKGHGDSVTGLCFSSD-GKCLATACADGVIRVHKLDDASSK-----SFKFLRINLPPGGPPTAVAFADNATSIVVAT 157 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~d-g~~l~t~s~dg~v~vW~~~~~~~~-----~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~ 157 (440)
...+.+|.+.|++++|+|+ +.+|++++.||.|++|++...... ..........|...+.+++|+|++..
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~----- 195 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG----- 195 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-----
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-----
Confidence 4556789999999999997 789999999999999999762110 01123344467788899999886541
Q ss_pred ecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCC
Q 013578 158 HNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK 237 (440)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~ 237 (440)
+|++|+.||.|++||+.
T Consensus 196 ---------------------------------------------------------------~l~s~~~dg~i~vwd~~ 212 (430)
T 2xyi_A 196 ---------------------------------------------------------------YLLSASDDHTICLWDIN 212 (430)
T ss_dssp ---------------------------------------------------------------EEEEECTTSCEEEEETT
T ss_pred ---------------------------------------------------------------eEEEEeCCCeEEEEeCC
Confidence 67888899999999998
Q ss_pred CCce-------eeeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC
Q 013578 238 TGKL-------LGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP 309 (440)
Q Consensus 238 ~~~~-------~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p 309 (440)
++.. ...+..|...|.+++|+| ++.+|++++.||.|++||++..... .....+..|...|++++|+|
T Consensus 213 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~-----~~~~~~~~~~~~v~~i~~~p 287 (430)
T 2xyi_A 213 ATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS-----KPSHTVDAHTAEVNCLSFNP 287 (430)
T ss_dssp SCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS-----SCSEEEECCSSCEEEEEECS
T ss_pred CCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC-----cceeEeecCCCCeEEEEeCC
Confidence 7432 355667888999999999 7889999999999999999765211 14556678999999999999
Q ss_pred CCC-EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEe-cCCEEEEEEcCCc
Q 013578 310 NSE-QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAAT-HGSTLQWLSVETG 386 (440)
Q Consensus 310 ~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~-~~~~i~i~d~~~~ 386 (440)
++. +|++|+.||.|++||++.... +......|...|.+++|+|+++ +|+++ .|+.|++||+...
T Consensus 288 ~~~~~l~tg~~dg~v~vwd~~~~~~-------------~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 288 YSEFILATGSADKTVALWDLRNLKL-------------KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354 (430)
T ss_dssp SCTTEEEEEETTSEEEEEETTCTTS-------------CSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred CCCCEEEEEeCCCeEEEEeCCCCCC-------------CeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence 987 688999999999999985321 1112224566799999999996 46665 5899999999872
Q ss_pred --------------cchhhhhccccCCeEEEEecCCCCCCCCCcce-EEEEeeCCCeEEEEeCCC
Q 013578 387 --------------KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVS-VLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 387 --------------~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~-~l~t~~~Dg~i~vw~~~~ 436 (440)
+.+..+ .+|...|++++|+|++ . +|++++.||.|+||++..
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~--------~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 355 GEEQSTEDAEDGPPELLFIH-GGHTAKISDFSWNPNE--------PWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp TCCCCHHHHHHCCTTEEEEC-CCCSSCEEEEEECSSS--------TTEEEEEETTSEEEEEEECH
T ss_pred ccccCccccccCCcceEEEc-CCCCCCceEEEECCCC--------CCEEEEEECCCCEEEeEccc
Confidence 334444 5789999999999998 6 899999999999999864
No 80
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-34 Score=283.02 Aligned_cols=353 Identities=9% Similarity=0.068 Sum_probs=227.5
Q ss_pred CCCCCCCCCCcccCcccc---------------ccccccCcceeEEEEccC-CCEEEEeeCCCcEEEEecCCCCCcceee
Q 013578 67 SHSHGDKDQNKRHHPLDV---------------NTLKGHGDSVTGLCFSSD-GKCLATACADGVIRVHKLDDASSKSFKF 130 (440)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~---------------~~l~~H~~~V~~l~~s~d-g~~l~t~s~dg~v~vW~~~~~~~~~~~~ 130 (440)
..+.+..++.++.|+..- ..+.+|.+.|++++|+|+ +..|++|+.||+| +||+.++... ..
T Consensus 112 ~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~--~~ 188 (902)
T 2oaj_A 112 WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIK--QS 188 (902)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEE--EE
T ss_pred EEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceE--EE
Confidence 345566778888776531 346789999999999996 5799999999999 9999875421 11
Q ss_pred EEec---------------CCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccccccccc--c-----ccc------
Q 013578 131 LRIN---------------LPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNE--G-----KQQ------ 182 (440)
Q Consensus 131 ~~~~---------------~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~------ 182 (440)
+... ..|...|.+++|+|++++|++++.| ..+.+|+......... . ...
T Consensus 189 ~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~D---g~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~ 265 (902)
T 2oaj_A 189 FIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHED---NSLVFWDANSGHMIMARTVFETEINVPQPDYIR 265 (902)
T ss_dssp ECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETT---CCEEEEETTTCCEEEEECSSCSCTTSCCTTCCC
T ss_pred EecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCcEEEEEeecccccCCCCCcCCC
Confidence 1110 1234679999999999999999988 4677777644321110 0 000
Q ss_pred ----CCCCCCceeecccc----------c-c-------cceeEE-E------------------------ee----c--c
Q 013578 183 ----SKLPGPEIKWEHHK----------V-H-------DKRAIL-T------------------------LF----G--A 209 (440)
Q Consensus 183 ----~~~~~~~~~~~~~~----------~-~-------~~~~~~-~------------------------~~----~--~ 209 (440)
.........|.... . . ...... . .. . .
T Consensus 266 ~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v 345 (902)
T 2oaj_A 266 DSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPI 345 (902)
T ss_dssp CCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCE
T ss_pred CCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCce
Confidence 00000112231100 0 0 000000 0 00 0 0
Q ss_pred cccccC----------CCCCeEEEEeeCCceEEEEeCCCCceeee-----------------------------------
Q 013578 210 SATYGT----------ADGSTIIASCSEGTDISIWHGKTGKLLGN----------------------------------- 244 (440)
Q Consensus 210 ~~~~~~----------~~~~~~l~s~~~d~~i~vwd~~~~~~~~~----------------------------------- 244 (440)
....+. .+.. .+++++.|+.|++||+.++.....
T Consensus 346 ~~~~~~~~~sp~~~g~~d~~-~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~ 424 (902)
T 2oaj_A 346 VNILPIPRQSPYFAGCHNPG-LILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAA 424 (902)
T ss_dssp EEEEECCSSCSHHHHTBSCS-EEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTT
T ss_pred EEEEECCCCCCCcCCCCCce-eEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcc
Confidence 000111 1223 677888899999999977753321
Q ss_pred ------eeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee-----eccccceEEEEEcCCCCE
Q 013578 245 ------VDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL-----KGHKSAVTWLCFAPNSEQ 313 (440)
Q Consensus 245 ------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~p~~~~ 313 (440)
+.+|...+..++|+|++++|++|+.|++|++||+..+........ ...+ .+|...|.+++|+|++++
T Consensus 425 ~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~--~~~l~~~~~~~h~~~V~svafspdg~~ 502 (902)
T 2oaj_A 425 QNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASF--EVNLSRTLNKAKELAVDKISFAAETLE 502 (902)
T ss_dssp BCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCE--EEEHHHHTTCSSSCCEEEEEEETTTTE
T ss_pred cCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceE--EeechhhcCCCCCCceeEEEecCCCCe
Confidence 123334455567789999999999999999999876531100000 0112 278999999999999999
Q ss_pred EEEEeCCCcEEEEecCccccccC--------------------CCCc-----------cccccccccCCCCCeeeeeeEE
Q 013578 314 IITASKDGTLRVWNINVRYHLDE--------------------DPKT-----------LKVLPIPLLDSNGATLQYDRLS 362 (440)
Q Consensus 314 l~s~~~dg~i~iwd~~~~~~~~~--------------------~~~~-----------~~~~~~~~~~~~~~~~~v~~~~ 362 (440)
||+|+.||+|+|||+.++..... .+.. ...--.+.....+|...|++++
T Consensus 503 LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~sva 582 (902)
T 2oaj_A 503 LAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAIN 582 (902)
T ss_dssp EEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEE
T ss_pred EEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEE
Confidence 99999999999999987632100 0000 0000001223345778899999
Q ss_pred eCCCCCEEEEec-CCEEEEEEcCCccchh-----hhhccccCCeEEEEec-----CCCCCCCCCcceEEEEeeCCCeEEE
Q 013578 363 LSSDGKILAATH-GSTLQWLSVETGKVLD-----TAEKAHEGEITCMAWA-----PKTIPMGNQQVSVLATSSVDKKVKL 431 (440)
Q Consensus 363 ~s~~g~~l~~~~-~~~i~i~d~~~~~~~~-----~~~~~h~~~v~~v~~~-----~~~~~~~~~~~~~l~t~~~Dg~i~v 431 (440)
||||| +||+|+ |+.|++||++++..+. .+..+|.+.|++++|+ ||+ ..+.+|++|+.|++|++
T Consensus 583 fSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg-----~~~~~l~sgs~D~tv~~ 656 (902)
T 2oaj_A 583 NSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDG-----YSSILMVCGTDMGEVIT 656 (902)
T ss_dssp ECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSS-----SEEEEEEEEETTSEEEE
T ss_pred ecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCC-----CcceEEEEEecCCcEEE
Confidence 99999 999876 8999999998876543 2212799999999999 874 22279999999999999
Q ss_pred EeC
Q 013578 432 WLA 434 (440)
Q Consensus 432 w~~ 434 (440)
|++
T Consensus 657 wd~ 659 (902)
T 2oaj_A 657 YKI 659 (902)
T ss_dssp EEE
T ss_pred EEE
Confidence 998
No 81
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-34 Score=256.57 Aligned_cols=273 Identities=11% Similarity=0.068 Sum_probs=201.2
Q ss_pred ccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEee
Q 013578 89 GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMY 168 (440)
Q Consensus 89 ~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~ 168 (440)
.-...|.+++|+|||+++||++.|++|+ |..... ...+|...|.+++|+|+|. ...+.+|
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~--------~l~gh~~~v~~V~FsPdg~----------~~~~~~~ 72 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK--------DINCNSKNLFHVKEFPLEF----------ENKLDFE 72 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS--------CCSSBGGGTEEEEEECCCC----------CCTTTTS
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc--------eecCCCccEEEEEECCCCC----------cceEEEE
Confidence 3468899999999999999999999999 644332 1247889999999999981 1222233
Q ss_pred ccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCC
Q 013578 169 GEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN 248 (440)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 248 (440)
....... . . ..+. .....+.++|+|. .+++++.||.|++||.+. ++..+. |
T Consensus 73 ~~~~~~~-~---------------~--~~~~-------~~V~~vawSPdG~-~LAs~s~dg~V~iwd~~~--~l~~l~-~ 123 (588)
T 2j04_A 73 LAQQNGL-L---------------N--SQPV-------CYPRVCKPSPIDD-WMAVLSNNGNVSVFKDNK--MLTNLD-S 123 (588)
T ss_dssp CCCSSCS-S---------------T--TSCS-------CCEEEEEECSSSS-CEEEEETTSCEEEEETTE--EEEECC-C
T ss_pred eCCCceE-e---------------e--cCCC-------CcEEEEEECCCCC-EEEEEeCCCcEEEEeCCc--eeeecc-C
Confidence 2211100 0 0 0011 1223345589999 999999999999999654 666666 5
Q ss_pred CC-----cccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee----eccccceEEEEEcCCCCEEEEEeC
Q 013578 249 QL-----KNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL----KGHKSAVTWLCFAPNSEQIITASK 319 (440)
Q Consensus 249 ~~-----~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~----~~h~~~v~~~~~~p~~~~l~s~~~ 319 (440)
.. .+.+++|||||++|++|+.||+|++||+..+..... .+-.+..+ .+|..+|.+++|+|+| +++++.
T Consensus 124 ~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~-~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~ 200 (588)
T 2j04_A 124 KGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTP-EFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS 200 (588)
T ss_dssp SSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCC-CCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET
T ss_pred CCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccc-cceeeeeeecccccccccEEEEEEcCCc--EEEEeC
Confidence 54 499999999999999999999999999876431000 00123444 6788999999999999 888999
Q ss_pred CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhccccCC
Q 013578 320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGE 399 (440)
Q Consensus 320 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~ 399 (440)
|++|++||+..+.... ....+ ..+|...|.+++|+ |..||+++++.|++||..+++..... .+|.+.
T Consensus 201 D~tVrlWd~~~~~~~~----~~~tL------~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~-~gh~~~ 267 (588)
T 2j04_A 201 NNSVFSMTVSASSHQP----VSRMI------QNASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLK-TGSLEN 267 (588)
T ss_dssp TCCEEEECCCSSSSCC----CEEEE------ECCCSSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEE-CSCCSC
T ss_pred CCeEEEEECCCCcccc----ceeee------cccccCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEE-cCCCce
Confidence 9999999998653210 00000 02445668999999 68999888999999999988874333 379999
Q ss_pred eEEEEe--cCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 400 ITCMAW--APKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 400 v~~v~~--~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
|.+++| +|++ ..|+++++||+ ++|..+
T Consensus 268 V~~va~~~s~d~--------~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 268 FHIIPLNHEKES--------TILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CCEEEETTCSSC--------EEEEECSSCEE-EEEESS
T ss_pred EEEEEeeeCCCC--------CEEEEEcCCCC-EEEeec
Confidence 999999 9998 89999999999 999875
No 82
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6.9e-33 Score=241.86 Aligned_cols=252 Identities=19% Similarity=0.320 Sum_probs=199.0
Q ss_pred eEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecc
Q 013578 130 FLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGA 209 (440)
Q Consensus 130 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (440)
......+|...|.+++|+|+++++++++.+ ..+.+|+........ ....|... .
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~d---g~i~iw~~~~~~~~~----------------~~~~h~~~-------v 68 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSAD---KLIKIWGAYDGKFEK----------------TISGHKLG-------I 68 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETT---SCEEEEETTTCCEEE----------------EECCCSSC-------E
T ss_pred eEEEEcccCCcEEEEEECCCCCEEEEeeCC---CeEEEEeCCCcccch----------------hhccCCCc-------e
Confidence 344556888999999999999999999877 456677654321100 00111111 2
Q ss_pred cccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeee
Q 013578 210 SATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAV 289 (440)
Q Consensus 210 ~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 289 (440)
..+.++|+++ +|++++.|+.|++||+.+++.+..+..|...+.+++|+|++++|++|+.|+.|++||++.++
T Consensus 69 ~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~------- 140 (312)
T 4ery_A 69 SDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK------- 140 (312)
T ss_dssp EEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-------
T ss_pred EEEEEcCCCC-EEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-------
Confidence 2334578887 99999999999999999999999999999999999999999999999999999999997654
Q ss_pred eeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCE
Q 013578 290 TSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKI 369 (440)
Q Consensus 290 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 369 (440)
.+..+..|..+|.+++|+|++.+|++++.|+.|++||++++..+.. ....+...+..++|+|++++
T Consensus 141 -~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 206 (312)
T 4ery_A 141 -CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT-------------LIDDDNPPVSFVKFSPNGKY 206 (312)
T ss_dssp -EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-------------ECCSSCCCEEEEEECTTSSE
T ss_pred -EEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeE-------------EeccCCCceEEEEECCCCCE
Confidence 5677888999999999999999999999999999999986643311 01123345788999999999
Q ss_pred EEEec-CCEEEEEEcCCccchhhhhccccCCeEE--EEec-CCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 370 LAATH-GSTLQWLSVETGKVLDTAEKAHEGEITC--MAWA-PKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 370 l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~--v~~~-~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
|++++ |+.|++||+.+++.+..+ .+|...+.+ ..|+ +++ .+|++|+.||.|++||+.+++
T Consensus 207 l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------~~l~sg~~dg~i~vwd~~~~~ 270 (312)
T 4ery_A 207 ILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGG--------KWIVSGSEDNLVYIWNLQTKE 270 (312)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEE-CSSCCSSSCCCEEEECSSS--------CEEEECCTTSCEEEEETTTCC
T ss_pred EEEEcCCCeEEEEECCCCcEEEEE-EecCCceEEEEEEEEeCCC--------cEEEEECCCCEEEEEECCCch
Confidence 98865 899999999999988877 467654433 2343 455 799999999999999998765
No 83
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=5e-33 Score=240.54 Aligned_cols=235 Identities=18% Similarity=0.225 Sum_probs=183.3
Q ss_pred CCCCCCCCCCcccCcc------ccccccccCcceeEEEEcc--CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCC
Q 013578 67 SHSHGDKDQNKRHHPL------DVNTLKGHGDSVTGLCFSS--DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG 138 (440)
Q Consensus 67 ~~~~~~~~~~~~~~~~------~~~~l~~H~~~V~~l~~s~--dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~ 138 (440)
..++++.|+.+++|.. .+.+|.+|.++|++++|++ +|++|+||+.||+|+|||+.++... .......|.
T Consensus 23 ~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~---~~~~~~~h~ 99 (297)
T 2pm7_B 23 RMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWS---QIAVHAVHS 99 (297)
T ss_dssp EEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBC---CCEEECCCS
T ss_pred EEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceE---EEEEeecCC
Confidence 3567778888888754 4678999999999999986 4899999999999999999865422 223345677
Q ss_pred CCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCC
Q 013578 139 GPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADG 218 (440)
Q Consensus 139 ~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (440)
..|.+++|+|+.. +
T Consensus 100 ~~v~~v~~~p~~~------------------------------------------------------------------g 113 (297)
T 2pm7_B 100 ASVNSVQWAPHEY------------------------------------------------------------------G 113 (297)
T ss_dssp SCEEEEEECCGGG------------------------------------------------------------------C
T ss_pred CceeEEEeCcCCC------------------------------------------------------------------C
Confidence 8899999988610 1
Q ss_pred CeEEEEeeCCceEEEEeCCCCce--eeeeeCCCCcccEEEecCC-------------CCeEEEEecCCCEEEEEeEecCC
Q 013578 219 STIIASCSEGTDISIWHGKTGKL--LGNVDTNQLKNNMAAISPN-------------GRFLAAAAFTADVKVWEIVYSKD 283 (440)
Q Consensus 219 ~~~l~s~~~d~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~~-------------~~~l~~~~~dg~i~i~d~~~~~~ 283 (440)
. +|++++.|+.|++||++++.. ...+..|...+.+++|+|+ +++|++|+.|+.|++||++...
T Consensus 114 ~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~- 191 (297)
T 2pm7_B 114 P-MLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA- 191 (297)
T ss_dssp S-EEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTT-
T ss_pred c-EEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC-
Confidence 1 788899999999999987632 3566788899999999997 5799999999999999997654
Q ss_pred CceeeeeeeeeeeccccceEEEEEcCCC---CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeee
Q 013578 284 GLVKAVTSVMQLKGHKSAVTWLCFAPNS---EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDR 360 (440)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 360 (440)
........+.+|...|.+++|+|++ .+|++++.|++|++||++..... ... .......+...|.+
T Consensus 192 ---~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~----~~~-----~~~~~~~~~~~v~~ 259 (297)
T 2pm7_B 192 ---QTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP----WKK-----TLLKEEKFPDVLWR 259 (297)
T ss_dssp ---TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC----CEE-----EESSSSCCSSCEEE
T ss_pred ---ceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc----cce-----eeeecccCCCcEEE
Confidence 2223456788999999999999985 78999999999999999753210 000 01111244566899
Q ss_pred EEeCCCCCEEEEec-CCEEEEEEcC
Q 013578 361 LSLSSDGKILAATH-GSTLQWLSVE 384 (440)
Q Consensus 361 ~~~s~~g~~l~~~~-~~~i~i~d~~ 384 (440)
++|+|+|++|++++ |+.|++|+..
T Consensus 260 ~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 260 ASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEECCCCCEEEEEcCCCcEEEEEEC
Confidence 99999999999865 8999999976
No 84
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.2e-33 Score=274.52 Aligned_cols=308 Identities=15% Similarity=0.158 Sum_probs=234.6
Q ss_pred CCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCce
Q 013578 68 HSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143 (440)
Q Consensus 68 ~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~ 143 (440)
.+.+..++.+++|.. .+..+.+|.+.|++++|+|++++|++|+.||.|++||+.++. .......|...|.+
T Consensus 28 la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-----~~~~~~~~~~~v~~ 102 (814)
T 3mkq_A 28 VLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-----KVVDFEAHPDYIRS 102 (814)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC-----EEEEEECCSSCEEE
T ss_pred EEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----EEEEEecCCCCEEE
Confidence 345556677777764 467888999999999999999999999999999999998765 33444568899999
Q ss_pred EEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEE
Q 013578 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIA 223 (440)
Q Consensus 144 v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 223 (440)
++|+|+++++++++.+ ..+.+|+....... ......+... ...+.++|++...++
T Consensus 103 ~~~s~~~~~l~~~~~d---g~i~vw~~~~~~~~---------------~~~~~~~~~~-------v~~~~~~p~~~~~l~ 157 (814)
T 3mkq_A 103 IAVHPTKPYVLSGSDD---LTVKLWNWENNWAL---------------EQTFEGHEHF-------VMCVAFNPKDPSTFA 157 (814)
T ss_dssp EEECSSSSEEEEEETT---SEEEEEEGGGTSEE---------------EEEEECCSSC-------EEEEEEETTEEEEEE
T ss_pred EEEeCCCCEEEEEcCC---CEEEEEECCCCceE---------------EEEEcCCCCc-------EEEEEEEcCCCCEEE
Confidence 9999999999998876 46667765432100 0000111111 122334663333899
Q ss_pred EeeCCceEEEEeCCCCceeeeeeCCC-CcccEEEecC--CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578 224 SCSEGTDISIWHGKTGKLLGNVDTNQ-LKNNMAAISP--NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300 (440)
Q Consensus 224 s~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~ 300 (440)
+++.|+.|++||+.+++....+..+. ..+.+++|+| ++.+|++++.||.|++||+..+. .+..+.+|..
T Consensus 158 ~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--------~~~~~~~~~~ 229 (814)
T 3mkq_A 158 SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS--------CVATLEGHMS 229 (814)
T ss_dssp EEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE--------EEEEEECCSS
T ss_pred EEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc--------EEEEEcCCCC
Confidence 99999999999999888777776554 7899999999 99999999999999999986554 5777888999
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC--EEEEecCCEE
Q 013578 301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK--ILAATHGSTL 378 (440)
Q Consensus 301 ~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~~~~~i 378 (440)
.|.+++|+|++.+|++++.||.|++||+.++.... ....+...+.+++|+|+|. +++++.++.+
T Consensus 230 ~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~--------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 295 (814)
T 3mkq_A 230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK--------------TLNVGLERSWCIATHPTGRKNYIASGFDNGF 295 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEE--------------EECCSSSSEEEEEECTTCGGGEEEEEETTEE
T ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE--------------EeecCCCcEEEEEEccCCCceEEEEEeCCCE
Confidence 99999999999999999999999999998654321 1123344688999999998 6888889999
Q ss_pred EEEEcCCccchhhh------------------------------------------hccccCCeEEEEecCCCCCCCCCc
Q 013578 379 QWLSVETGKVLDTA------------------------------------------EKAHEGEITCMAWAPKTIPMGNQQ 416 (440)
Q Consensus 379 ~i~d~~~~~~~~~~------------------------------------------~~~h~~~v~~v~~~~~~~~~~~~~ 416 (440)
.+|++..+.....+ ...|...+.+++|+|++
T Consensus 296 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg------- 368 (814)
T 3mkq_A 296 TVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNG------- 368 (814)
T ss_dssp EEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTS-------
T ss_pred EEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCC-------
Confidence 99987643221111 02244568899999998
Q ss_pred ceEEEEeeCCCeEEEEeCCC
Q 013578 417 VSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 417 ~~~l~t~~~Dg~i~vw~~~~ 436 (440)
++|++++ ||.+.+|++..
T Consensus 369 -~~la~~~-~~~~~i~~~~~ 386 (814)
T 3mkq_A 369 -RFVTVVG-DGEYVIYTALA 386 (814)
T ss_dssp -SEEEEEE-TTEEEEEETTT
T ss_pred -CEEEEec-CCEEEEEECcc
Confidence 7888887 89999999754
No 85
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.7e-33 Score=245.58 Aligned_cols=276 Identities=20% Similarity=0.309 Sum_probs=204.8
Q ss_pred CCCCCCCCCCcccCcc---------ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCC
Q 013578 67 SHSHGDKDQNKRHHPL---------DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPP 137 (440)
Q Consensus 67 ~~~~~~~~~~~~~~~~---------~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~ 137 (440)
..++++.|+.+++|.. +.+.+.+|.+.|.+++|+|+|++|++|+.|+.|++|+..... .......+
T Consensus 53 ~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~-----~~~~~~~~ 127 (340)
T 4aow_A 53 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGT-----TTRRFVGH 127 (340)
T ss_dssp EEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----EEEEEECC
T ss_pred EEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccc-----eeeeecCC
Confidence 4567788898988864 356789999999999999999999999999999999988654 23334455
Q ss_pred CCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCC
Q 013578 138 GGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTAD 217 (440)
Q Consensus 138 ~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (440)
...+..+.+++++..+++++.+ ..+.+|+......... ....+....... .+.++
T Consensus 128 ~~~~~~~~~~~~~~~l~s~s~d---~~~~~~d~~~~~~~~~---------------~~~~~~~~v~~~-------~~~~~ 182 (340)
T 4aow_A 128 TKDVLSVAFSSDNRQIVSGSRD---KTIKLWNTLGVCKYTV---------------QDESHSEWVSCV-------RFSPN 182 (340)
T ss_dssp SSCEEEEEECTTSSCEEEEETT---SCEEEECTTSCEEEEE---------------CSSSCSSCEEEE-------EECSC
T ss_pred CCceeEEEEeecCccceeecCC---CeEEEEEeCCCceEEE---------------EeccccCcccce-------EEccC
Confidence 6778889999999999999877 4566666543211100 001111111111 11222
Q ss_pred C-CeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee
Q 013578 218 G-STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK 296 (440)
Q Consensus 218 ~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 296 (440)
+ ..++++++.|+.|++||+.+++.+..+..|...|.+++|+|++++|++|+.||.|++||++... .+..+.
T Consensus 183 ~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~--------~~~~~~ 254 (340)
T 4aow_A 183 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK--------HLYTLD 254 (340)
T ss_dssp SSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE--------EEEEEE
T ss_pred CCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc--------eeeeec
Confidence 2 2378899999999999999999999999999999999999999999999999999999986554 455555
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-C
Q 013578 297 GHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-G 375 (440)
Q Consensus 297 ~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~ 375 (440)
+...|.++.|+|++. +++++.|+.|++||+++.......... .......++...|.+++|+|+|++|++|+ |
T Consensus 255 -~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D 327 (340)
T 4aow_A 255 -GGDIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQE-----VISTSSKAEPPQCTSLAWSADGQTLFAGYTD 327 (340)
T ss_dssp -CSSCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC------------CCCCCEEEEEECTTSSEEEEEETT
T ss_pred -CCceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEecccc-----ceeeeccCCCCCEEEEEECCCCCEEEEEeCC
Confidence 456899999999876 556667999999999876543221111 11223346677899999999999999875 8
Q ss_pred CEEEEEEcCCcc
Q 013578 376 STLQWLSVETGK 387 (440)
Q Consensus 376 ~~i~i~d~~~~~ 387 (440)
|.|++||+++|+
T Consensus 328 g~v~iW~~~tGt 339 (340)
T 4aow_A 328 NLVRVWQVTIGT 339 (340)
T ss_dssp SCEEEEEEEC--
T ss_pred CEEEEEeCCCcC
Confidence 999999999986
No 86
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=7e-33 Score=254.51 Aligned_cols=286 Identities=11% Similarity=0.170 Sum_probs=195.4
Q ss_pred CCCCCCCCCCCcccCccc---------------cccccccC------------cceeEEEEccCC--CEEEEeeCCCcEE
Q 013578 66 HSHSHGDKDQNKRHHPLD---------------VNTLKGHG------------DSVTGLCFSSDG--KCLATACADGVIR 116 (440)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~---------------~~~l~~H~------------~~V~~l~~s~dg--~~l~t~s~dg~v~ 116 (440)
...+++..++.+++|... +..+.+|. +.|++++|+|++ .+|++++.||+|+
T Consensus 41 ~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~ 120 (447)
T 3dw8_B 41 ELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIK 120 (447)
T ss_dssp SEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEE
T ss_pred CEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEE
Confidence 345666777878777643 66788998 889999999998 8999999999999
Q ss_pred EEecCCCCCccee-----------------------------------eEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578 117 VHKLDDASSKSFK-----------------------------------FLRINLPPGGPPTAVAFADNATSIVVATHNLS 161 (440)
Q Consensus 117 vW~~~~~~~~~~~-----------------------------------~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~ 161 (440)
+|++......... .......|...|.+++
T Consensus 121 iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~---------------- 184 (447)
T 3dw8_B 121 LWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS---------------- 184 (447)
T ss_dssp EEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE----------------
T ss_pred EEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE----------------
Confidence 9998753321000 0000112222233333
Q ss_pred cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC-Cc
Q 013578 162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT-GK 240 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~ 240 (440)
++++++ +++++ .|+.|++||+.+ ++
T Consensus 185 ----------------------------------------------------~~~~~~-~l~s~-~d~~i~iwd~~~~~~ 210 (447)
T 3dw8_B 185 ----------------------------------------------------INSDYE-TYLSA-DDLRINLWHLEITDR 210 (447)
T ss_dssp ----------------------------------------------------ECTTSS-EEEEE-CSSEEEEEETTEEEE
T ss_pred ----------------------------------------------------EcCCCC-EEEEe-CCCeEEEEECCCCCc
Confidence 355555 77777 799999999984 34
Q ss_pred eee-------eeeCCCCcccEEEecCCC-CeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc------------
Q 013578 241 LLG-------NVDTNQLKNNMAAISPNG-RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS------------ 300 (440)
Q Consensus 241 ~~~-------~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~------------ 300 (440)
.+. .+..|...|.+++|+|++ ++|++|+.||.|++||++..... ......+.+|..
T Consensus 211 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 286 (447)
T 3dw8_B 211 SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC----DRHSKLFEEPEDPSNRSFFSEIIS 286 (447)
T ss_dssp EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS----CTTCEEECCC-----CCHHHHHTT
T ss_pred eeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc----cceeeEeccCCCccccccccccCc
Confidence 443 355788899999999998 99999999999999999765410 001455666665
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEecCc-cccccCCCCccccccc-cccCCCCCeeeeeeEEeCCCCCEEEEec-CCE
Q 013578 301 AVTWLCFAPNSEQIITASKDGTLRVWNINV-RYHLDEDPKTLKVLPI-PLLDSNGATLQYDRLSLSSDGKILAATH-GST 377 (440)
Q Consensus 301 ~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~ 377 (440)
.|.+++|+|++++|++++. +.|++||++. +..+............ ...........+..++|+|++++|++|+ |+.
T Consensus 287 ~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~ 365 (447)
T 3dw8_B 287 SISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNF 365 (447)
T ss_dssp CEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTE
T ss_pred eEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCE
Confidence 8999999999999999998 9999999986 3322111000000000 0000000001133599999999999876 899
Q ss_pred EEEEEcCCccchhhh-------------------------------hccccCCeEEEEecCCCCCCCCCcceEEEEeeCC
Q 013578 378 LQWLSVETGKVLDTA-------------------------------EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD 426 (440)
Q Consensus 378 i~i~d~~~~~~~~~~-------------------------------~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D 426 (440)
|++||+.+++.+... ...+...|.+++|+|++ .+|++++.|
T Consensus 366 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~--------~~la~~~~~ 437 (447)
T 3dw8_B 366 FRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKE--------NIIAVATTN 437 (447)
T ss_dssp EEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSS--------SEEEEECSS
T ss_pred EEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCC--------CEEEEEecc
Confidence 999999988764310 01245679999999998 899998877
Q ss_pred CeEEEEeCC
Q 013578 427 KKVKLWLAP 435 (440)
Q Consensus 427 g~i~vw~~~ 435 (440)
+ +++|...
T Consensus 438 ~-~~~~~~~ 445 (447)
T 3dw8_B 438 N-LYIFQDK 445 (447)
T ss_dssp C-EEEEECC
T ss_pred e-eeeeccc
Confidence 6 7777643
No 87
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.2e-32 Score=266.23 Aligned_cols=281 Identities=19% Similarity=0.270 Sum_probs=206.9
Q ss_pred CCCCCCCCCCCcccCcc---------ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCC
Q 013578 66 HSHSHGDKDQNKRHHPL---------DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLP 136 (440)
Q Consensus 66 ~~~~~~~~~~~~~~~~~---------~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~ 136 (440)
....+++.|+.+++|.. ..+.+.+|.+.|.+++|+|+|++|+||+.||+|+|||+.++. .......
T Consensus 396 ~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~-----~~~~~~~ 470 (694)
T 3dm0_A 396 DIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGV-----STRRFVG 470 (694)
T ss_dssp SEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----EEEEEEC
T ss_pred CEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc-----ceeEEeC
Confidence 34567888898988854 245788999999999999999999999999999999998764 3445567
Q ss_pred CCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCC
Q 013578 137 PGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA 216 (440)
Q Consensus 137 ~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (440)
|...|.+++|+|+++.+++++.| ..+.+|+......... ......|...+ .++.+++
T Consensus 471 h~~~v~~~~~s~~~~~l~s~s~D---~~i~iwd~~~~~~~~~-------------~~~~~~h~~~v-------~~~~~~~ 527 (694)
T 3dm0_A 471 HTKDVLSVAFSLDNRQIVSASRD---RTIKLWNTLGECKYTI-------------SEGGEGHRDWV-------SCVRFSP 527 (694)
T ss_dssp CSSCEEEEEECTTSSCEEEEETT---SCEEEECTTSCEEEEE-------------CSSTTSCSSCE-------EEEEECS
T ss_pred CCCCEEEEEEeCCCCEEEEEeCC---CEEEEEECCCCcceee-------------ccCCCCCCCcE-------EEEEEeC
Confidence 88999999999999999999987 5677777532211000 00001111111 1223356
Q ss_pred CC-CeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee
Q 013578 217 DG-STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL 295 (440)
Q Consensus 217 ~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 295 (440)
++ ...+++++.|++|++||+.+++....+..|...|.+++|+|++++|++|+.||.|++||++.++ .+..+
T Consensus 528 ~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~--------~~~~~ 599 (694)
T 3dm0_A 528 NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK--------KLYSL 599 (694)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTE--------EEECC
T ss_pred CCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--------eEEEe
Confidence 55 2389999999999999999999999999999999999999999999999999999999997654 44444
Q ss_pred eccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCcccccc-----ccccCCCCCeeeeeeEEeCCCCCEE
Q 013578 296 KGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLP-----IPLLDSNGATLQYDRLSLSSDGKIL 370 (440)
Q Consensus 296 ~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~s~~g~~l 370 (440)
. +...|.+++|+|++.+|++++ |+.|++||++++..+........... ........+...+++++|+|+|++|
T Consensus 600 ~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l 677 (694)
T 3dm0_A 600 E-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTL 677 (694)
T ss_dssp B-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEE
T ss_pred c-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEE
Confidence 4 456899999999998777765 56799999997765432111100000 0000111222347889999999999
Q ss_pred EEec-CCEEEEEEcC
Q 013578 371 AATH-GSTLQWLSVE 384 (440)
Q Consensus 371 ~~~~-~~~i~i~d~~ 384 (440)
++|+ ||.|++|++.
T Consensus 678 ~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 678 FSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEETTSEEEEEEC-
T ss_pred EEEcCCCeEEEEecc
Confidence 9876 9999999975
No 88
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=2.9e-32 Score=241.66 Aligned_cols=293 Identities=14% Similarity=0.155 Sum_probs=195.6
Q ss_pred ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
++..+.+|.+.|++++|+|||++|++|+.|+ ++||++...... ... +...+..+++.++++.+++++...
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~d-- 80 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI----MSQ---EMRHLSKVRMLHRTNYVAFVTGVK-- 80 (355)
T ss_dssp --------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE----EEE---ECSCCCEEEECTTSSEEEEECSST--
T ss_pred CccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCccee----eee---ecCCeEEEEEcCCCCEEEEEECCc--
Confidence 3556789999999999999999999998776 789998754321 111 113588899999999887665442
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC-ce
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG-KL 241 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~~ 241 (440)
..+.+|+........... +...+ ..+.++++ .++.+ .++.|++||+.++ +.
T Consensus 81 ~~v~iWd~~~~~~~~~~~-----------------~~~~v-------~~v~~~~~---~~~~~-~~~~i~i~d~~~~~~~ 132 (355)
T 3vu4_A 81 EVVHIWDDVKKQDVSRIK-----------------VDAPV-------KDLFLSRE---FIVVS-YGDVISVFKFGNPWKR 132 (355)
T ss_dssp TEEEEEETTTTEEEEEEE-----------------CSSCE-------EEEEECSS---EEEEE-ETTEEEEEESSTTCCB
T ss_pred cEEEEEECCCCcEEEEEE-----------------CCCce-------EEEEEcCC---EEEEE-EcCEEEEEECCCCcee
Confidence 477888765442111100 00001 11112232 33333 3678999999988 67
Q ss_pred eeeeeCCCCcccEEEecCCCCeEEE--EecCCCEEEEEeEecCCCce-------eeeee-eeeeeccccceEEEEEcCCC
Q 013578 242 LGNVDTNQLKNNMAAISPNGRFLAA--AAFTADVKVWEIVYSKDGLV-------KAVTS-VMQLKGHKSAVTWLCFAPNS 311 (440)
Q Consensus 242 ~~~~~~~~~~v~~~~~s~~~~~l~~--~~~dg~i~i~d~~~~~~~~~-------~~~~~-~~~~~~h~~~v~~~~~~p~~ 311 (440)
+..+.. +...+++++ .++++ |+.||.|++||+..+..... ....+ +..+.+|.+.|++++|+|++
T Consensus 133 ~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g 207 (355)
T 3vu4_A 133 ITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS 207 (355)
T ss_dssp SSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS
T ss_pred eEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC
Confidence 666654 344566777 56666 68899999999975431000 00112 67788999999999999999
Q ss_pred CEEEEEeCCCc-EEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccch
Q 013578 312 EQIITASKDGT-LRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVL 389 (440)
Q Consensus 312 ~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~ 389 (440)
++|++++.|++ |++||++++.++.. .....|...|.+++|+|+|++|++++ |+.|++||+..+...
T Consensus 208 ~~l~s~s~d~~~v~iwd~~~~~~~~~------------~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~ 275 (355)
T 3vu4_A 208 DMVATCSQDGTIIRVFKTEDGVLVRE------------FRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDN 275 (355)
T ss_dssp SEEEEEETTCSEEEEEETTTCCEEEE------------EECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcEEEE------------EEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCc
Confidence 99999999998 99999997654321 11112566799999999999999875 899999999765421
Q ss_pred h--h--------------------hhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 390 D--T--------------------AEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 390 ~--~--------------------~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
. . +...+......++|++++ .+|++++.||.+++|++..++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~--------~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 276 KRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISES--------SLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSS--------EEEEEETTTTEEEEEEEEEET
T ss_pred ccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCC--------CEEEEEeCCCeEEEEEEEcCC
Confidence 1 1 111112234779999998 899999999999999987644
No 89
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.2e-32 Score=248.87 Aligned_cols=293 Identities=15% Similarity=0.143 Sum_probs=209.3
Q ss_pred CCCCCCCCCCcccCcc----------ccccccccCcceeEEEEccC----C---CEEEEeeCCCcEEEEecCCCCCccee
Q 013578 67 SHSHGDKDQNKRHHPL----------DVNTLKGHGDSVTGLCFSSD----G---KCLATACADGVIRVHKLDDASSKSFK 129 (440)
Q Consensus 67 ~~~~~~~~~~~~~~~~----------~~~~l~~H~~~V~~l~~s~d----g---~~l~t~s~dg~v~vW~~~~~~~~~~~ 129 (440)
...++..++.+++|.. .+..+.+|...|.+++|+|+ | ++|++++.||.|++|++.++......
T Consensus 28 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 107 (397)
T 1sq9_A 28 FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKV 107 (397)
T ss_dssp EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCE
T ss_pred eEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccc
Confidence 3455666777766643 36678899999999999999 9 99999999999999999876642222
Q ss_pred eEEecCCC-----CCCCceEEEc----cCCCe-EEEEeecCCcceEEeecccc------ccccccccccCCCCCCceeec
Q 013578 130 FLRINLPP-----GGPPTAVAFA----DNATS-IVVATHNLSGCSLYMYGEEK------AISTNEGKQQSKLPGPEIKWE 193 (440)
Q Consensus 130 ~~~~~~~~-----~~~v~~v~~~----~~~~~-l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 193 (440)
.......| ...|.+++|+ |+++. +++++.+ ..+.+|+... ..... ..+...+.
T Consensus 108 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~ 176 (397)
T 1sq9_A 108 IFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK---GTTYIWKFHPFADESNSLTLN--------WSPTLELQ 176 (397)
T ss_dssp EEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT---SCEEEEEEESSSSHHHHTTTC--------CCCEEEEE
T ss_pred cceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC---CcEEEEeCCccccccccceee--------ccCcceee
Confidence 24444555 4889999999 99999 8888876 4566666554 11000 00000000
Q ss_pred c----cccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeC---C---CCcccEEEecCCCCe
Q 013578 194 H----HKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDT---N---QLKNNMAAISPNGRF 263 (440)
Q Consensus 194 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~---~---~~~v~~~~~s~~~~~ 263 (440)
. ...+ ......+.+++++ ++++++.|+.|++||+++++.+..+.. | ...+.+++|+|++++
T Consensus 177 ~~~~~~~~~-------~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~ 247 (397)
T 1sq9_A 177 GTVESPMTP-------SQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL 247 (397)
T ss_dssp EEECCSSSS-------CCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE
T ss_pred eeeccccCC-------CCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCE
Confidence 0 0000 1123334457777 899999999999999999999999988 8 889999999999999
Q ss_pred EEEEecC---CCEEEEEeEecCCCceeeeeeeeeeec-------------cccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578 264 LAAAAFT---ADVKVWEIVYSKDGLVKAVTSVMQLKG-------------HKSAVTWLCFAPNSEQIITASKDGTLRVWN 327 (440)
Q Consensus 264 l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~-------------h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd 327 (440)
|++++.| |.|++||++..+ .+..+.+ |...|.+++|+|++++|++++.||.|++||
T Consensus 248 l~~~~~d~~~g~i~i~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 248 LAIAHDSNSFGCITLYETEFGE--------RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp EEEEEEETTEEEEEEEETTTCC--------EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred EEEEecCCCCceEEEEECCCCc--------ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 9999999 999999987654 5666777 999999999999999999999999999999
Q ss_pred cCccccccCCCCccc--c-----ccccccCCCCCeeeeeeEEeCCCC----------CEEEEec-CCEEEEEEcCCcc
Q 013578 328 INVRYHLDEDPKTLK--V-----LPIPLLDSNGATLQYDRLSLSSDG----------KILAATH-GSTLQWLSVETGK 387 (440)
Q Consensus 328 ~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~v~~~~~s~~g----------~~l~~~~-~~~i~i~d~~~~~ 387 (440)
++++..+........ . .....+....|...|.+++|+|++ ++|++++ |+.|++|++.+|+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 320 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 987654422110000 0 000000111236779999999998 6787765 9999999998764
No 90
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.7e-32 Score=248.09 Aligned_cols=248 Identities=17% Similarity=0.197 Sum_probs=197.7
Q ss_pred cceeEEEEccCCCEE-EEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEcc-CCCeEEEEeecCCcceEEeec
Q 013578 92 DSVTGLCFSSDGKCL-ATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFAD-NATSIVVATHNLSGCSLYMYG 169 (440)
Q Consensus 92 ~~V~~l~~s~dg~~l-~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~~~~~~~~~~~~ 169 (440)
.....++++|+...+ ++++.||.|+||++...... ........+|...|.+++|+| ++.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-~~~~~~~~~h~~~V~~~~~~p~~~~------------------ 95 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-DKNVPLVCGHTAPVLDIAWCPHNDN------------------ 95 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-CTTCCCBCCCSSCEEEEEECTTCTT------------------
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC-CCCCceEecCCCCEEEEEeCCCCCC------------------
Confidence 345568999887544 46789999999999654321 112234457889999999988 543
Q ss_pred cccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC-------cee
Q 013578 170 EEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG-------KLL 242 (440)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-------~~~ 242 (440)
+|++++.|+.|++||+.++ +.+
T Consensus 96 ---------------------------------------------------~l~s~s~dg~v~vw~~~~~~~~~~~~~~~ 124 (402)
T 2aq5_A 96 ---------------------------------------------------VIASGSEDCTVMVWEIPDGGLVLPLREPV 124 (402)
T ss_dssp ---------------------------------------------------EEEEEETTSEEEEEECCTTCCSSCBCSCS
T ss_pred ---------------------------------------------------EEEEEeCCCeEEEEEccCCCCccccCCce
Confidence 7888899999999999987 567
Q ss_pred eeeeCCCCcccEEEecCCC-CeEEEEecCCCEEEEEeEecCCCceeeeeeeeee--eccccceEEEEEcCCCCEEEEEeC
Q 013578 243 GNVDTNQLKNNMAAISPNG-RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL--KGHKSAVTWLCFAPNSEQIITASK 319 (440)
Q Consensus 243 ~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~l~s~~~ 319 (440)
..+..|...|.+++|+|++ ++|++++.||.|++||+..+. .+..+ .+|...|.+++|+|++.+|++++.
T Consensus 125 ~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 196 (402)
T 2aq5_A 125 ITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA--------AVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196 (402)
T ss_dssp EEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE--------EEEEECTTTCCSCEEEEEECTTSSCEEEEET
T ss_pred EEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC--------ccEEEecCCCCCceEEEEECCCCCEEEEEec
Confidence 8888999999999999998 699999999999999987654 56667 789999999999999999999999
Q ss_pred CCcEEEEecCccccccCCCCccccccccccCCCCCee-eeeeEEeCCCCCEEEEe----cCCEEEEEEcCCccc-hhhhh
Q 013578 320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATL-QYDRLSLSSDGKILAAT----HGSTLQWLSVETGKV-LDTAE 393 (440)
Q Consensus 320 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~----~~~~i~i~d~~~~~~-~~~~~ 393 (440)
|+.|++||++++..+... ...+.. .+.++.|+|++++|++| .++.|++||+.+++. +....
T Consensus 197 d~~i~iwd~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~ 263 (402)
T 2aq5_A 197 DKRVRVIEPRKGTVVAEK-------------DRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE 263 (402)
T ss_dssp TSEEEEEETTTTEEEEEE-------------ECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE
T ss_pred CCcEEEEeCCCCceeeee-------------ccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe
Confidence 999999999876443210 012222 36789999999999998 589999999998775 33332
Q ss_pred ccccCCeEEEEecCCCCCCCCCcceEEE-EeeCCCeEEEEeCCCCC
Q 013578 394 KAHEGEITCMAWAPKTIPMGNQQVSVLA-TSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 394 ~~h~~~v~~v~~~~~~~~~~~~~~~~l~-t~~~Dg~i~vw~~~~~~ 438 (440)
..|...|.+++|+|++ .+|+ +|+.||.|++|++.+++
T Consensus 264 ~~~~~~v~~~~~s~~~--------~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 264 LDTSSGVLLPFFDPDT--------NIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp CCCCSSCEEEEEETTT--------TEEEEEETTCSCEEEEEECSST
T ss_pred ccCCCceeEEEEcCCC--------CEEEEEEcCCCeEEEEEecCCC
Confidence 3577889999999998 6775 55679999999998876
No 91
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=5.8e-33 Score=253.56 Aligned_cols=274 Identities=14% Similarity=0.161 Sum_probs=193.6
Q ss_pred CCCCCCCCCCCCcccCccc------cccccccCcceeEEEEcc-CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCC
Q 013578 65 PHSHSHGDKDQNKRHHPLD------VNTLKGHGDSVTGLCFSS-DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPP 137 (440)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~------~~~l~~H~~~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~ 137 (440)
....++++.|+.+++|+.. +..+.+|.+.|++|+|+| ++++|+||+.||+|++||+.+... ........+
T Consensus 132 ~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~---~~~~~~~~~ 208 (435)
T 4e54_B 132 PSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL---RVFASSDTI 208 (435)
T ss_dssp TTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE---EEEECCSSC
T ss_pred CCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce---eEEeccCCC
Confidence 3445677889999998653 345679999999999998 789999999999999999975431 223333344
Q ss_pred CCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCC
Q 013578 138 GGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTAD 217 (440)
Q Consensus 138 ~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (440)
...+.+++|+|++.++++++.+ ..+.+|+...... .....|...+. .+.++|+
T Consensus 209 ~~~~~~~~~~~~~~~l~~g~~d---g~i~~wd~~~~~~-----------------~~~~~h~~~v~-------~v~~~p~ 261 (435)
T 4e54_B 209 NIWFCSLDVSASSRMVVTGDNV---GNVILLNMDGKEL-----------------WNLRMHKKKVT-------HVALNPC 261 (435)
T ss_dssp SCCCCCEEEETTTTEEEEECSS---SBEEEEESSSCBC-----------------CCSBCCSSCEE-------EEEECTT
T ss_pred CccEEEEEECCCCCEEEEEeCC---CcEeeeccCccee-----------------EEEecccceEE-------eeeecCC
Confidence 5568899999999999999877 4677776542210 00112222222 2344788
Q ss_pred CCeEEEEeeCCceEEEEeCCCCceeee---eeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee
Q 013578 218 GSTIIASCSEGTDISIWHGKTGKLLGN---VDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ 294 (440)
Q Consensus 218 ~~~~l~s~~~d~~i~vwd~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 294 (440)
+..++++++.|+.|++||+++.+.... ...|...|.+++|+|+|++|++++.||.|++||+.... ....
T Consensus 262 ~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~--------~~~~ 333 (435)
T 4e54_B 262 CDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWD--------CPLG 333 (435)
T ss_dssp CSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSS--------SEEE
T ss_pred CceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCc--------cceE
Confidence 877899999999999999988765433 35688899999999999999999999999999987654 2223
Q ss_pred eecccc------ceEEEEEcCCCCEEEEEe------------CCCcEEEEecCccccccCCCCccccccccccCCCCCee
Q 013578 295 LKGHKS------AVTWLCFAPNSEQIITAS------------KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATL 356 (440)
Q Consensus 295 ~~~h~~------~v~~~~~~p~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (440)
+..|.. .+....|+|++..+++++ .++.|++||..++..+.. ...+|..
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~-------------l~~~~~~ 400 (435)
T 4e54_B 334 LIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQ-------------LYDPESS 400 (435)
T ss_dssp ECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEE-------------ECCSSCC
T ss_pred EecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEE-------------EeCCCCC
Confidence 333321 233456677666666554 345799999987654321 1123444
Q ss_pred eeeeE-EeCCCCCEEEEecCCEEEEEEcCCccch
Q 013578 357 QYDRL-SLSSDGKILAATHGSTLQWLSVETGKVL 389 (440)
Q Consensus 357 ~v~~~-~~s~~g~~l~~~~~~~i~i~d~~~~~~~ 389 (440)
.|.++ +|+|+|++|++|+|+.|+||++++++..
T Consensus 401 ~v~s~~~fspdg~~lasg~d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 401 GISSLNEFNPMGDTLASAMGYHILIWSQQEARTR 434 (435)
T ss_dssp CCCCEEEECTTSSCEEEECSSEEEECCCC-----
T ss_pred cEEEEEEECCCCCEEEEEcCCcEEEEECCcCeee
Confidence 56666 6999999999999999999999988753
No 92
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=5.7e-33 Score=249.80 Aligned_cols=278 Identities=12% Similarity=0.085 Sum_probs=184.4
Q ss_pred ccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEE
Q 013578 87 LKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLY 166 (440)
Q Consensus 87 l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~ 166 (440)
...|...+....+++++.+|++|+.|++|+|||+..++...........+|.+.|.+++|+|.... .
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~------~------- 151 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSA------D------- 151 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECT------T-------
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEcccccc------c-------
Confidence 344556666666777888999999999999999988765544555567789999999999873110 0
Q ss_pred eeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeee
Q 013578 167 MYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD 246 (440)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 246 (440)
...+++ +|++++.|++|++||+.++.++..+.
T Consensus 152 -----------------------------------------------~~~d~~-~las~s~D~tv~~Wd~~~~~~~~~~~ 183 (393)
T 4gq1_A 152 -----------------------------------------------NRLAEQ-VIASVGDDCTLIIWRLTDEGPILAGY 183 (393)
T ss_dssp -----------------------------------------------CSEEEE-EEEEEETTSEEEEEEEETTEEEEEEE
T ss_pred -----------------------------------------------cCCCCC-EEEEEECCCeEEEEECCCCceeeeec
Confidence 011333 89999999999999999888888888
Q ss_pred CCCCcccEEEecCCC-CeEEEEecCCCEEEEEeEecCCCceee-----------------eeeeeeeeccccceEEEEEc
Q 013578 247 TNQLKNNMAAISPNG-RFLAAAAFTADVKVWEIVYSKDGLVKA-----------------VTSVMQLKGHKSAVTWLCFA 308 (440)
Q Consensus 247 ~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~-----------------~~~~~~~~~h~~~v~~~~~~ 308 (440)
.|...+.+++|+|++ ++|++|+.||.|++||++.++...... ........+|...|.++.|+
T Consensus 184 ~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~ 263 (393)
T 4gq1_A 184 PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI 263 (393)
T ss_dssp ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEE
T ss_pred CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeee
Confidence 888999999999987 489999999999999986654211000 00112235788899999987
Q ss_pred -CCCCEEEEEeCCCcEEEEecCccccccCCCCcccccc-----ccccCCCCCeeeeeeEEeCCC-CCEEEEec-CCEEEE
Q 013578 309 -PNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLP-----IPLLDSNGATLQYDRLSLSSD-GKILAATH-GSTLQW 380 (440)
Q Consensus 309 -p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~-~~~i~i 380 (440)
|++..|++++.|+++++||+................. ............+..+.+.+. +.++++|+ |+.|++
T Consensus 264 ~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~l 343 (393)
T 4gq1_A 264 GSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQL 343 (393)
T ss_dssp TTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEE
T ss_pred cCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEE
Confidence 7999999999999999999987654322111100000 000000111112222333333 44566665 899999
Q ss_pred EEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 381 LSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 381 ~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
||+.+++....+ ..|...|.+++|+|++ ++||+++.|| +.+|++.
T Consensus 344 wd~~~~~~~~~~-~~~~~~V~svafspdG--------~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 344 INTYEKDSNSIP-IQLGMPIVDFCWHQDG--------SHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp EETTCTTCCEEE-EECSSCEEEEEECTTS--------SEEEEEESSE-EEEEEEG
T ss_pred EECCCCcEEEEe-cCCCCcEEEEEEcCCC--------CEEEEEeCCC-eEEEEEe
Confidence 999999988777 4788999999999999 8999998766 6666553
No 93
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-32 Score=240.04 Aligned_cols=276 Identities=11% Similarity=0.088 Sum_probs=194.0
Q ss_pred EEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccccccc
Q 013578 97 LCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAIST 176 (440)
Q Consensus 97 l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 176 (440)
..+.+++++|++|+.||+|++||+.++.... .+. ...|.++.|+|+ +++++.| ..+.+|+.......
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~--~~~-----~~~v~~~~~~~~---~~s~s~D---~~i~~w~~~~~~~~ 108 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTIT--TIT-----TPNPRTGGEHPA---IISRGPC---NRLLLLYPGNQITI 108 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEE--EEE-----EECCCTTCCCCS---EEEECST---TEEEEEETTTEEEE
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEE--EEe-----cCCceeeeeCCc---eEEecCC---CeEEEEEccCceEE
Confidence 3455688999999999999999998765321 111 266888889988 7777766 56777765543211
Q ss_pred ccccccCCCCCCceeecccccccceeEE-Ee-ecccccccCC--CCCeEEEEeeCCceEEEEeCCCCceeeeee-CCCCc
Q 013578 177 NEGKQQSKLPGPEIKWEHHKVHDKRAIL-TL-FGASATYGTA--DGSTIIASCSEGTDISIWHGKTGKLLGNVD-TNQLK 251 (440)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~--~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~ 251 (440)
|+........... .. .....+.++| +++ ++++++.|++|++||+++++.+.... .+...
T Consensus 109 ---------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~ 172 (343)
T 3lrv_A 109 ---------------LDSKTNKVLREIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVE 172 (343)
T ss_dssp ---------------EETTTCCEEEEEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCEEEEECCCSSCC
T ss_pred ---------------eecCCcceeEEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCCCc
Confidence 1111111000000 00 1123344567 777 89999999999999999998876653 34557
Q ss_pred ccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeee-eeeec-cccceEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 013578 252 NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSV-MQLKG-HKSAVTWLCFAPNSEQIITASKDGTLRVWNIN 329 (440)
Q Consensus 252 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~-h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~ 329 (440)
+.+++|+|++.+|++|+.||.|++||++.+. .. ..+.+ |.++|++++|+|++.+|++++ |+.|++||++
T Consensus 173 i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~--------~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~ 243 (343)
T 3lrv_A 173 YSSGVLHKDSLLLALYSPDGILDVYNLSSPD--------QASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLR 243 (343)
T ss_dssp CCEEEECTTSCEEEEECTTSCEEEEESSCTT--------SCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETT
T ss_pred eEEEEECCCCCEEEEEcCCCEEEEEECCCCC--------CCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcC
Confidence 9999999999999999999999999998765 33 56677 999999999999999999999 5599999999
Q ss_pred ccccccCCCCccccccccccCCCCCeeee--eeEEeCCCCCEEEEec--CCEEEEEEcCCccchhhhhccccCCeEEEEe
Q 013578 330 VRYHLDEDPKTLKVLPIPLLDSNGATLQY--DRLSLSSDGKILAATH--GSTLQWLSVETGKVLDTAEKAHEGEITCMAW 405 (440)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~s~~g~~l~~~~--~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~ 405 (440)
+....... ..+ ..+...+ .+++|+|+|++|++++ ++.+++|+..+....... .++..++|
T Consensus 244 ~~~~~~~~----~~~-------~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~ 307 (343)
T 3lrv_A 244 KDVGTLAY----PTY-------TIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-----DEESALCL 307 (343)
T ss_dssp SSTTCBSS----CCC-------BC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----EEEEECCC
T ss_pred CCCcceee----ccc-------ccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-----cCceeEec
Confidence 76443211 100 0111222 3699999999999843 899999999766543221 56788899
Q ss_pred cC---CCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578 406 AP---KTIPMGNQQVSVLATSSVDKKVKLWLA 434 (440)
Q Consensus 406 ~~---~~~~~~~~~~~~l~t~~~Dg~i~vw~~ 434 (440)
.+ +. ..|++++.||.++++-.
T Consensus 308 ~~~~~~~--------~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 308 QSDTADF--------TDMDVVCGDGGIAAILK 331 (343)
T ss_dssp ----CCC--------CEEEEEEETTEEEEEEE
T ss_pred Ccccccc--------ceeEEEecCCceEEEEe
Confidence 98 55 78999999999988754
No 94
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-31 Score=237.86 Aligned_cols=286 Identities=15% Similarity=0.138 Sum_probs=213.6
Q ss_pred CCCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCc
Q 013578 67 SHSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPT 142 (440)
Q Consensus 67 ~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~ 142 (440)
..+++..++.++.|.. .+..+.+|.+.|.+++|+|++++|++++.||.|++||+.++... ... .+...+.
T Consensus 46 ~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~-~~~~~v~ 119 (369)
T 3zwl_B 46 LLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCV-----ATW-KSPVPVK 119 (369)
T ss_dssp EEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE-----EEE-ECSSCEE
T ss_pred EEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE-----EEe-ecCCCeE
Confidence 4456667788887754 46788999999999999999999999999999999999876532 222 2668899
Q ss_pred eEEEccCCCeEEEEeec--CCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCe
Q 013578 143 AVAFADNATSIVVATHN--LSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGST 220 (440)
Q Consensus 143 ~v~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (440)
+++|+|+++++++++.+ .....+.+|+............... ....... .+.. ......+.++++++
T Consensus 120 ~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~--~~~~~~~---~~~~-----~~~~~~~~~~~~~~- 188 (369)
T 3zwl_B 120 RVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSE--EPIHKII---THEG-----LDAATVAGWSTKGK- 188 (369)
T ss_dssp EEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECS--SCSEEEE---CCTT-----CCCEEEEEECGGGC-
T ss_pred EEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccc--ceeeecc---CCcC-----ccceeEEEEcCCCC-
Confidence 99999999999998865 2224666666554321111100000 0000000 0000 00222334577777
Q ss_pred EEEEeeCCceEEEEeCCC-CceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccc
Q 013578 221 IIASCSEGTDISIWHGKT-GKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK 299 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~ 299 (440)
++++++.|+.|++||+.+ ++.+..+..|...+.+++|+|++++|++++.||.|++||++... ....+. +.
T Consensus 189 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--------~~~~~~-~~ 259 (369)
T 3zwl_B 189 YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ--------VLKKYE-TD 259 (369)
T ss_dssp EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--------EEEEEE-CS
T ss_pred EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCc--------eeeeec-CC
Confidence 899999999999999998 78888899999999999999999999999999999999986654 444444 77
Q ss_pred cceEEEEEcCCCCEEEEEeCCC--------------cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC
Q 013578 300 SAVTWLCFAPNSEQIITASKDG--------------TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS 365 (440)
Q Consensus 300 ~~v~~~~~~p~~~~l~s~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 365 (440)
..+.+++|+|+++++++++.++ .+++||+.+...+. ...+|...|.+++|+|
T Consensus 260 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~--------------~~~~~~~~v~~~~~s~ 325 (369)
T 3zwl_B 260 CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIG--------------RVQGHFGPLNTVAISP 325 (369)
T ss_dssp SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEE--------------EEECCSSCEEEEEECT
T ss_pred CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchh--------------heecccCcEEEEEECC
Confidence 8899999999999999999988 89999988654321 1234566799999999
Q ss_pred CCCEEEEec-CCEEEEEEcCCccchhhh
Q 013578 366 DGKILAATH-GSTLQWLSVETGKVLDTA 392 (440)
Q Consensus 366 ~g~~l~~~~-~~~i~i~d~~~~~~~~~~ 392 (440)
++++|++++ |+.|++|++.++.....+
T Consensus 326 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 353 (369)
T 3zwl_B 326 QGTSYASGGEDGFIRLHHFEKSYFDFKY 353 (369)
T ss_dssp TSSEEEEEETTSEEEEEEECHHHHTCCC
T ss_pred CCCEEEEEcCCCeEEEEECccccchhHH
Confidence 999999876 999999999887655443
No 95
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-31 Score=242.04 Aligned_cols=281 Identities=16% Similarity=0.218 Sum_probs=197.2
Q ss_pred CCCCCCCcccCccc----cccccc-cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceE
Q 013578 70 HGDKDQNKRHHPLD----VNTLKG-HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAV 144 (440)
Q Consensus 70 ~~~~~~~~~~~~~~----~~~l~~-H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v 144 (440)
.+..++.++.|... ...+.. |.+.|.+++|+|++++|++|+.||.|++||+.++. .......|...|.++
T Consensus 108 ~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~ 182 (401)
T 4aez_A 108 AVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT-----KLRTMAGHQARVGCL 182 (401)
T ss_dssp EEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCEEEE
T ss_pred EEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe-----EEEEecCCCCceEEE
Confidence 34456667766542 233333 89999999999999999999999999999998764 344556788999999
Q ss_pred EEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEE
Q 013578 145 AFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIAS 224 (440)
Q Consensus 145 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 224 (440)
+| ++..+++++.+ ..+.+|+....... ......+.. ....+.+++++. ++++
T Consensus 183 ~~--~~~~l~~~~~d---g~i~i~d~~~~~~~---------------~~~~~~~~~-------~v~~~~~~~~~~-~l~s 234 (401)
T 4aez_A 183 SW--NRHVLSSGSRS---GAIHHHDVRIANHQ---------------IGTLQGHSS-------EVCGLAWRSDGL-QLAS 234 (401)
T ss_dssp EE--ETTEEEEEETT---SEEEEEETTSSSCE---------------EEEEECCSS-------CEEEEEECTTSS-EEEE
T ss_pred EE--CCCEEEEEcCC---CCEEEEecccCcce---------------eeEEcCCCC-------CeeEEEEcCCCC-EEEE
Confidence 99 45788888876 56777765422100 000011111 122334577777 9999
Q ss_pred eeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCC-eEEEEe--cCCCEEEEEeEecCCCceeeeeeeeeeeccccc
Q 013578 225 CSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGR-FLAAAA--FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSA 301 (440)
Q Consensus 225 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~ 301 (440)
++.|+.|++||+.+++.+..+..|...+.+++|+|++. ++++++ .|+.|++||+..+. .+..+. +...
T Consensus 235 ~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~--------~~~~~~-~~~~ 305 (401)
T 4aez_A 235 GGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA--------RVNTVD-AGSQ 305 (401)
T ss_dssp EETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC--------EEEEEE-CSSC
T ss_pred EeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC--------EEEEEe-CCCc
Confidence 99999999999999999999999999999999999765 555544 79999999987654 444454 6678
Q ss_pred eEEEEEcCCCCEEEEEe--CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEE
Q 013578 302 VTWLCFAPNSEQIITAS--KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTL 378 (440)
Q Consensus 302 v~~~~~~p~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i 378 (440)
|.+++|+|++++|++++ .||.|++||++++.... .....+|...|.+++|+|+|++|++++ |+.|
T Consensus 306 v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~------------~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i 373 (401)
T 4aez_A 306 VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTK------------QVDIPAHDTRVLYSALSPDGRILSTAASDENL 373 (401)
T ss_dssp EEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEE------------EEEEECCSSCCCEEEECTTSSEEEEECTTSEE
T ss_pred EEEEEECCCCCeEEEEeecCCCcEEEEecCCcccee------------EEEecCCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 99999999999999854 89999999998643211 111234566789999999999999876 8999
Q ss_pred EEEEcCCccchhhhhccccCCeEEEE
Q 013578 379 QWLSVETGKVLDTAEKAHEGEITCMA 404 (440)
Q Consensus 379 ~i~d~~~~~~~~~~~~~h~~~v~~v~ 404 (440)
++|++.+++.+......+......+.
T Consensus 374 ~iw~~~~~~~~~~~~~~~~~~~~~i~ 399 (401)
T 4aez_A 374 KFWRVYDGDHVKRPIPITKTPSSSIT 399 (401)
T ss_dssp EEEECCC-------------------
T ss_pred EEEECCCCccccccccccCCCcccee
Confidence 99999999887765433444444443
No 96
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=1.2e-31 Score=226.55 Aligned_cols=298 Identities=14% Similarity=0.127 Sum_probs=195.6
Q ss_pred cccccccCc----ceeEEEEccCCC---EEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEE
Q 013578 84 VNTLKGHGD----SVTGLCFSSDGK---CLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVA 156 (440)
Q Consensus 84 ~~~l~~H~~----~V~~l~~s~dg~---~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~ 156 (440)
+..|+.-.+ .+.++-|-..|- .+++++.+ +|++|+..+. ..+........|+.+|..+.|.||...|+..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~lw~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 104 (356)
T 2w18_A 28 VSELKNPSGSCSVDVSAMFWERAGCKEPCIITACED-VVSLWKALDA--WQWEKLYTWHFAEVPVLQIVPVPDVYNLVCV 104 (356)
T ss_dssp EEEECCCCSSCEEEEEEEEEC----CEEEEEEEESS-EEEEEEESSS--SBEEEEEEEECCSSCEEEECCCTTCCSCEEE
T ss_pred eehhcCCCCCeEEEEeeeeeccCCCCccEEEEeccc-eEEEcccCCC--ccceeeEEEeccCceeEEEEEcCcccceeee
Confidence 444554433 355666655443 67787765 7999999875 3445667777888899999999987776665
Q ss_pred eec-CCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEee--CCceEEE
Q 013578 157 THN-LSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCS--EGTDISI 233 (440)
Q Consensus 157 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~d~~i~v 233 (440)
.-. .....++..-..... .....+.....+...+ ...++++ ++.+++ .|+.|++
T Consensus 105 ~~~~~~~~~v~sla~spd~------------~~~~~~l~s~g~~~~v----------~~l~~g~-lv~ss~~g~d~~V~~ 161 (356)
T 2w18_A 105 ALGNLEIREIRALFCSSDD------------ESEKQVLLKSGNIKAV----------LGLTKRR-LVSSSGTLSDQQVEV 161 (356)
T ss_dssp EECSSSEEEEEEECC------------------CCEEEEEEEEEEEE----------EEETTTE-EEEEESSSTTCEEEE
T ss_pred eeccccccceEEEEECCCc------------cccccEEEeCCCeEEE----------EecCCCc-EEEecccCCCCcEEE
Confidence 533 111222111110000 0000111111111111 0123443 555533 5999999
Q ss_pred EeC-CCCceeeeeeCCCCcccEEEecC---CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccc---cceEEEE
Q 013578 234 WHG-KTGKLLGNVDTNQLKNNMAAISP---NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK---SAVTWLC 306 (440)
Q Consensus 234 wd~-~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~ 306 (440)
|++ .+++.+..+..|...++.++|++ ++..|++|+.|++|+|||+.+++ .+..+.+|. ..+.+++
T Consensus 162 ~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk--------~l~tL~g~~~~v~~v~~va 233 (356)
T 2w18_A 162 MTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ--------LLKKMHIDDSYQASVCHKA 233 (356)
T ss_dssp EEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC--------EEEEEECCC---CCCEEEE
T ss_pred EEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc--------EEEEEcCCCcceeeeEEEE
Confidence 999 55888888889999999999999 78999999999999999998776 677777654 3677889
Q ss_pred EcCCCCEE------------EEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec
Q 013578 307 FAPNSEQI------------ITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH 374 (440)
Q Consensus 307 ~~p~~~~l------------~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 374 (440)
|+|+|.++ ++|+.|++|++||..++..+. .+.... ..+|...+. ..+.++.++|+++
T Consensus 234 fSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~-------v~~~~~--p~Gh~~~~l--sg~~sg~~lASgS 302 (356)
T 2w18_A 234 YSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVG-------VMLYCL--PPGQAGRFL--EGDVKDHCAAAIL 302 (356)
T ss_dssp EEETTEEEEEEC------------CCEEEEEEETTTTEEEE-------EEEECC--CTTCCCCEE--EEEEETTEEEEEE
T ss_pred ECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEE-------EEEeec--cCCCcceeE--ccccCCCEEEEEc
Confidence 99999876 567889999999998775532 110000 122322232 2333377888876
Q ss_pred -CCEEEEEEcCCccchhhhhccccCCeE-EEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 375 -GSTLQWLSVETGKVLDTAEKAHEGEIT-CMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 375 -~~~i~i~d~~~~~~~~~~~~~h~~~v~-~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
|++|+|||+.+++++..+ .+|...+. .++|+|++ ++|++|+.|++|||||+.
T Consensus 303 ~DgTIkIWDl~tGk~l~tL-~gH~~~vvs~vafSPDG--------~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 303 TSGTIAIWDLLLGQCTALL-PPVSDQHWSFVKWSGTD--------SHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp TTSCEEEEETTTCSEEEEE-CCC--CCCCEEEECSSS--------SEEEEECTTSCEEEEEEC
T ss_pred CCCcEEEEECCCCcEEEEe-cCCCCCeEEEEEECCCC--------CEEEEEECCCcEEEecCC
Confidence 999999999999999998 47877655 68999999 899999999999999963
No 97
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-31 Score=242.32 Aligned_cols=300 Identities=11% Similarity=0.015 Sum_probs=209.4
Q ss_pred CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCc-ceeeEE-------------------------------------
Q 013578 91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSK-SFKFLR------------------------------------- 132 (440)
Q Consensus 91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~-~~~~~~------------------------------------- 132 (440)
..++.+++|++||++|+++ .++.|++||+.+++.. ......
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3589999999999976665 5789999999877611 000000
Q ss_pred --------------ecCCCCCCCceEEEccCCCeE-EEEeecCCcceEEeeccc--cccccccccccCCCCCCceeeccc
Q 013578 133 --------------INLPPGGPPTAVAFADNATSI-VVATHNLSGCSLYMYGEE--KAISTNEGKQQSKLPGPEIKWEHH 195 (440)
Q Consensus 133 --------------~~~~~~~~v~~v~~~~~~~~l-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 195 (440)
...++...|.+++|+|++++| ++++.+ ..+.+|+.. ..... ..+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~d---g~v~iwd~~~~~~~~~-------------~~~~~- 145 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSD---KSLLVFDVDKTSKNVL-------------KLRKR- 145 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGG---TEEEEEEECSSSSSCE-------------EEEEE-
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCC---CeEEEEECcCCCCcee-------------eeeec-
Confidence 001234479999999999997 566555 456666654 21100 00000
Q ss_pred ccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee----eeeCCCCcccEEEecCC---CCeEEEEe
Q 013578 196 KVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG----NVDTNQLKNNMAAISPN---GRFLAAAA 268 (440)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~----~~~~~~~~v~~~~~s~~---~~~l~~~~ 268 (440)
.........+.++|++. +|++++.++.|++|++.+++... .+..|...|.+++|+|+ +++|++|+
T Consensus 146 -------~~~~~~v~~~~~sp~~~-~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~ 217 (450)
T 2vdu_B 146 -------FCFSKRPNAISIAEDDT-TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSD 217 (450)
T ss_dssp -------EECSSCEEEEEECTTSS-EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEE
T ss_pred -------ccCCCCceEEEEcCCCC-EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEc
Confidence 00011223455688888 89999999999999998877554 77788899999999999 99999999
Q ss_pred cCCCEEEEEeEecCCCceeeeeeeee-eeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCcc--cccc
Q 013578 269 FTADVKVWEIVYSKDGLVKAVTSVMQ-LKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTL--KVLP 345 (440)
Q Consensus 269 ~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~ 345 (440)
.|+.|++||++.+. .+.. +.+|...|.+++|+ ++.+|++++.|+.|++||++++..+....... ..+.
T Consensus 218 ~d~~i~vwd~~~~~--------~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~ 288 (450)
T 2vdu_B 218 RDEHIKISHYPQCF--------IVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYL 288 (450)
T ss_dssp TTSCEEEEEESCTT--------CEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGC
T ss_pred CCCcEEEEECCCCc--------eeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhh
Confidence 99999999997655 3444 56899999999999 99999999999999999999876543211100 0000
Q ss_pred c---------cccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEc--CCc---cchhhhhccccCCeEEEEecCCC
Q 013578 346 I---------PLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSV--ETG---KVLDTAEKAHEGEITCMAWAPKT 409 (440)
Q Consensus 346 ~---------~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~--~~~---~~~~~~~~~h~~~v~~v~~~~~~ 409 (440)
. ...........+..++|+|++++|+++. ++.|++|++ .++ +.+..+ ..| +.|.+++|+|++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~-~~~-~~v~~~~~~~~~ 366 (450)
T 2vdu_B 289 NDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQII-TFP-YNVISLSAHNDE 366 (450)
T ss_dssp CTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEE-ECS-SCEEEEEEETTE
T ss_pred hhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEe-ccC-CceEEEEecCCc
Confidence 0 0000012345688999999999998764 799999999 555 555555 356 889999999974
Q ss_pred CCCCCCcceEEEEeeC-------CCeEEEEeCCC
Q 013578 410 IPMGNQQVSVLATSSV-------DKKVKLWLAPS 436 (440)
Q Consensus 410 ~~~~~~~~~~l~t~~~-------Dg~i~vw~~~~ 436 (440)
++++.+. +..|.+|.+..
T Consensus 367 ---------~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 367 ---------FQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp ---------EEEEECCTTCCSSCCCSEEEEEEET
T ss_pred ---------EEEEEecccCCCCCCcceEEEEEEc
Confidence 5555433 55688887654
No 98
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.6e-31 Score=237.99 Aligned_cols=287 Identities=13% Similarity=0.038 Sum_probs=210.0
Q ss_pred CCCCCCCCCcccCcc------ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCC
Q 013578 68 HSHGDKDQNKRHHPL------DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPP 141 (440)
Q Consensus 68 ~~~~~~~~~~~~~~~------~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v 141 (440)
.+.+..++.+++|.. .+..+.+|.+.|.+++|+|++++|++++.||.|++||+.++... .......|...|
T Consensus 23 l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~~~v 99 (372)
T 1k8k_C 23 IAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK---PTLVILRINRAA 99 (372)
T ss_dssp EEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE---EEEECCCCSSCE
T ss_pred EEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeee---eeEEeecCCCce
Confidence 455556777777753 46678899999999999999999999999999999999765421 223345678899
Q ss_pred ceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeE
Q 013578 142 TAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTI 221 (440)
Q Consensus 142 ~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (440)
.+++|+|+++++++++.+ ..+.+|+......... .-.....+... ...+.++++++ +
T Consensus 100 ~~~~~~~~~~~l~~~~~d---~~v~i~d~~~~~~~~~------------~~~~~~~~~~~-------i~~~~~~~~~~-~ 156 (372)
T 1k8k_C 100 RCVRWAPNEKKFAVGSGS---RVISICYFEQENDWWV------------CKHIKKPIRST-------VLSLDWHPNSV-L 156 (372)
T ss_dssp EEEEECTTSSEEEEEETT---SSEEEEEEETTTTEEE------------EEEECTTCCSC-------EEEEEECTTSS-E
T ss_pred eEEEECCCCCEEEEEeCC---CEEEEEEecCCCccee------------eeeeecccCCC-------eeEEEEcCCCC-E
Confidence 999999999999999877 3455555443210000 00000111111 22334477777 8
Q ss_pred EEEeeCCceEEEEeC------------------CCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCC
Q 013578 222 IASCSEGTDISIWHG------------------KTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKD 283 (440)
Q Consensus 222 l~s~~~d~~i~vwd~------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 283 (440)
+++++.|+.|++||+ ..++.+..+..|...+.+++|+|++++|++++.||.|++||++.++
T Consensus 157 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~- 235 (372)
T 1k8k_C 157 LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM- 235 (372)
T ss_dssp EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT-
T ss_pred EEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-
Confidence 999999999999995 4678888888899999999999999999999999999999997665
Q ss_pred CceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCc--cc--cccCCCCc----------cccc---c-
Q 013578 284 GLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINV--RY--HLDEDPKT----------LKVL---P- 345 (440)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~--~~--~~~~~~~~----------~~~~---~- 345 (440)
.+..+..|...|.+++|+|++.+|+++ .|+.|++|+++. +. ........ ...+ .
T Consensus 236 -------~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (372)
T 1k8k_C 236 -------AVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDK 307 (372)
T ss_dssp -------EEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCC
T ss_pred -------eeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccc
Confidence 677788899999999999999988877 899999999987 32 10000000 0000 0
Q ss_pred ---c-----c-ccCCCCCeeeeeeEEeC-CCC---CEEEEec-CCEEEEEEcCCccch
Q 013578 346 ---I-----P-LLDSNGATLQYDRLSLS-SDG---KILAATH-GSTLQWLSVETGKVL 389 (440)
Q Consensus 346 ---~-----~-~~~~~~~~~~v~~~~~s-~~g---~~l~~~~-~~~i~i~d~~~~~~~ 389 (440)
. . .....+|...|.+++|. ++| .+|++|+ ||.|++|++.+++.+
T Consensus 308 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 308 KASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp CC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred ccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHh
Confidence 0 0 11123777889999966 666 8888865 999999999887654
No 99
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.4e-32 Score=236.12 Aligned_cols=233 Identities=17% Similarity=0.190 Sum_probs=181.2
Q ss_pred CCCCCCCCCCcccCcc------ccccccccCcceeEEEEcc--CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCC
Q 013578 67 SHSHGDKDQNKRHHPL------DVNTLKGHGDSVTGLCFSS--DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG 138 (440)
Q Consensus 67 ~~~~~~~~~~~~~~~~------~~~~l~~H~~~V~~l~~s~--dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~ 138 (440)
..++++.|+.+++|.. .+..|.+|.+.|++++|++ ++++|+||+.|++|++||+.++... .......|.
T Consensus 27 ~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~---~~~~~~~h~ 103 (316)
T 3bg1_A 27 RLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWE---KSHEHAGHD 103 (316)
T ss_dssp EEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCC---EEEEECCCS
T ss_pred EEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcce---EEEEccCCC
Confidence 3567788888888864 3567899999999999986 4899999999999999999865322 233456788
Q ss_pred CCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCC
Q 013578 139 GPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADG 218 (440)
Q Consensus 139 ~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (440)
..|.+++|+|+.. +
T Consensus 104 ~~V~~v~~~p~~~------------------------------------------------------------------g 117 (316)
T 3bg1_A 104 SSVNSVCWAPHDY------------------------------------------------------------------G 117 (316)
T ss_dssp SCCCEEEECCTTT------------------------------------------------------------------C
T ss_pred CceEEEEECCCCC------------------------------------------------------------------C
Confidence 8999999998631 1
Q ss_pred CeEEEEeeCCceEEEEeCCCCce---eeeeeCCCCcccEEEecCC-----------------CCeEEEEecCCCEEEEEe
Q 013578 219 STIIASCSEGTDISIWHGKTGKL---LGNVDTNQLKNNMAAISPN-----------------GRFLAAAAFTADVKVWEI 278 (440)
Q Consensus 219 ~~~l~s~~~d~~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~~-----------------~~~l~~~~~dg~i~i~d~ 278 (440)
. +|++++.|+.|++||+..+.. ...+..|...+.+++|+|+ +++|++|+.|+.|++||+
T Consensus 118 ~-~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~ 196 (316)
T 3bg1_A 118 L-ILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKE 196 (316)
T ss_dssp S-CEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEE
T ss_pred c-EEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEe
Confidence 1 688999999999999987632 3455678888999999997 478999999999999998
Q ss_pred EecCCCceeeeeeeeeeeccccceEEEEEcCCC----CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCC
Q 013578 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS----EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGA 354 (440)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (440)
+... .......+.+|...|.+++|+|++ .+|++++.|++|++||++...... .....+ ..+
T Consensus 197 ~~~~-----~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~---~~~~~~-------~~~ 261 (316)
T 3bg1_A 197 EEDG-----QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNT---WSPKLL-------HKF 261 (316)
T ss_dssp CTTS-----CEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCC---CBCCEE-------EEC
T ss_pred CCCC-----ccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccc---hhhhhh-------hcC
Confidence 5331 112456788999999999999986 789999999999999997531100 000000 123
Q ss_pred eeeeeeEEeCCCCCEEEEec-CCEEEEEEcC
Q 013578 355 TLQYDRLSLSSDGKILAATH-GSTLQWLSVE 384 (440)
Q Consensus 355 ~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~ 384 (440)
...|.+++|+|++++|++++ |+.|++|+..
T Consensus 262 ~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 262 NDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp SSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 45689999999999998865 8999999975
No 100
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6.6e-31 Score=233.67 Aligned_cols=206 Identities=13% Similarity=0.168 Sum_probs=160.6
Q ss_pred cccCcceeEEEEccCCCEEEE--eeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceE
Q 013578 88 KGHGDSVTGLCFSSDGKCLAT--ACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSL 165 (440)
Q Consensus 88 ~~H~~~V~~l~~s~dg~~l~t--~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~ 165 (440)
..+...+.+++|||||++|++ ++.|++|+|||+.+.... . ...|...|.+++|+|+++
T Consensus 130 ~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~-----~-~~~~~~~V~~v~fspdg~-------------- 189 (365)
T 4h5i_A 130 TNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEK-----F-EIETRGEVKDLHFSTDGK-------------- 189 (365)
T ss_dssp CCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEE-----E-EEECSSCCCEEEECTTSS--------------
T ss_pred CCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEE-----E-EeCCCCceEEEEEccCCc--------------
Confidence 345677999999999999765 457999999999876421 1 123667899999999877
Q ss_pred EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee--
Q 013578 166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG-- 243 (440)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-- 243 (440)
++++++.++ +++|+..+++.+.
T Consensus 190 -------------------------------------------------------~l~s~s~~~-~~~~~~~~~~~~~~~ 213 (365)
T 4h5i_A 190 -------------------------------------------------------VVAYITGSS-LEVISTVTGSCIARK 213 (365)
T ss_dssp -------------------------------------------------------EEEEECSSC-EEEEETTTCCEEEEE
T ss_pred -------------------------------------------------------eEEecccee-EEEEEeccCcceeee
Confidence 455555444 6677777776553
Q ss_pred eeeCCCCcccEEEecCCCCeEEEEecCC----CEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC
Q 013578 244 NVDTNQLKNNMAAISPNGRFLAAAAFTA----DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK 319 (440)
Q Consensus 244 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~ 319 (440)
....|...+.+++|+|+++++++++.|+ .+++|++.... ........+.+|...|++++|+|+|++||+|+.
T Consensus 214 ~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~ 289 (365)
T 4h5i_A 214 TDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGN----TSVLRSKQVTNRFKGITSMDVDMKGELAVLASN 289 (365)
T ss_dssp CCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTE----EEEEEEEEEESSCSCEEEEEECTTSCEEEEEET
T ss_pred ecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccce----ecceeeeeecCCCCCeEeEEECCCCCceEEEcC
Confidence 3345778899999999999999999887 47778875443 222345667889999999999999999999999
Q ss_pred CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCc
Q 013578 320 DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETG 386 (440)
Q Consensus 320 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~ 386 (440)
|++|+|||+++++.+.. ...+|...|++++|+|||++||+|+ |++|+|||+...
T Consensus 290 D~~V~iwd~~~~~~~~~-------------~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 290 DNSIALVKLKDLSMSKI-------------FKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TSCEEEEETTTTEEEEE-------------ETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCEEEEEECCCCcEEEE-------------ecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999987654321 1246778899999999999999976 999999998644
No 101
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.3e-31 Score=240.87 Aligned_cols=267 Identities=14% Similarity=0.156 Sum_probs=195.0
Q ss_pred CCCCCCCCCCCcccCccc----ccc--ccccCcceeEEEEcc-CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCC
Q 013578 66 HSHSHGDKDQNKRHHPLD----VNT--LKGHGDSVTGLCFSS-DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG 138 (440)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~----~~~--l~~H~~~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~ 138 (440)
...+++..++.+++|... ... +.+|.+.|.+++|+| ++++|++++.||.|++||+... ..........+.
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~ 163 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS---VIQVFAKTDSWD 163 (383)
T ss_dssp TEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC---EEEEEECCCCSS
T ss_pred CEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC---ceEEEeccCCCC
Confidence 345677778888888653 222 347999999999999 7899999999999999999852 222333334455
Q ss_pred CCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCC
Q 013578 139 GPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADG 218 (440)
Q Consensus 139 ~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (440)
..|.+++|+|+++++++++.+ ..+.+|+..... . .....+... ...+.++|++
T Consensus 164 ~~v~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~--------------~---~~~~~h~~~-------v~~~~~~~~~ 216 (383)
T 3ei3_B 164 YWYCCVDVSVSRQMLATGDST---GRLLLLGLDGHE--------------I---FKEKLHKAK-------VTHAEFNPRC 216 (383)
T ss_dssp CCEEEEEEETTTTEEEEEETT---SEEEEEETTSCE--------------E---EEEECSSSC-------EEEEEECSSC
T ss_pred CCeEEEEECCCCCEEEEECCC---CCEEEEECCCCE--------------E---EEeccCCCc-------EEEEEECCCC
Confidence 789999999999999999877 567777753210 0 000111111 2233457888
Q ss_pred CeEEEEeeCCceEEEEeCCC----CceeeeeeCCCCcccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeee
Q 013578 219 STIIASCSEGTDISIWHGKT----GKLLGNVDTNQLKNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM 293 (440)
Q Consensus 219 ~~~l~s~~~d~~i~vwd~~~----~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 293 (440)
+.++++++.|+.|++||+++ +..+..+ .|...+.+++|+| ++++|++++.|+.|++||++.... ..
T Consensus 217 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~--------~~ 287 (383)
T 3ei3_B 217 DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK--------PD 287 (383)
T ss_dssp TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS--------CS
T ss_pred CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc--------cc
Confidence 76899999999999999987 5566666 5788999999999 999999999999999999976652 22
Q ss_pred eeec-------cc----------cceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCee
Q 013578 294 QLKG-------HK----------SAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATL 356 (440)
Q Consensus 294 ~~~~-------h~----------~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (440)
.+.+ |. +.+..++|+|++++ +++.|+.|++||++++..+.. .....+..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~------------l~~~~~~~ 353 (383)
T 3ei3_B 288 QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQ------------LRDPNAAG 353 (383)
T ss_dssp EEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEE------------ECBTTBCS
T ss_pred ccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeee------------ecCCCCCc
Confidence 2222 22 34455677777766 778999999999987654321 11122344
Q ss_pred eeeeEEeCCCCCEEEEecCCEEEEEEcCC
Q 013578 357 QYDRLSLSSDGKILAATHGSTLQWLSVET 385 (440)
Q Consensus 357 ~v~~~~~s~~g~~l~~~~~~~i~i~d~~~ 385 (440)
.+..++|+|++++|++++|+.|++||+++
T Consensus 354 ~~~~~~~s~~g~~l~s~sd~~i~iw~~~~ 382 (383)
T 3ei3_B 354 IISLNKFSPTGDVLASGMGFNILIWNRED 382 (383)
T ss_dssp CCCEEEECTTSSEEEEEETTEEEEEECC-
T ss_pred eEEEEEEecCccEEEEecCCcEEEEecCC
Confidence 56678999999999999999999999874
No 102
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.8e-30 Score=231.04 Aligned_cols=289 Identities=14% Similarity=0.114 Sum_probs=201.0
Q ss_pred CCCcccCcccc-----ccccccCcceeEEEEccC---CCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEE
Q 013578 74 DQNKRHHPLDV-----NTLKGHGDSVTGLCFSSD---GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA 145 (440)
Q Consensus 74 ~~~~~~~~~~~-----~~l~~H~~~V~~l~~s~d---g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~ 145 (440)
++.+++|...- ....+|.+.|.+++|+|+ |++|++|+.||.|++||+.++.. .......|...|.++.
T Consensus 43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~ 118 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM----PVYSVKGHKEIINAID 118 (357)
T ss_dssp CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS----CSEEECCCSSCEEEEE
T ss_pred CcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc----cEEEEEecccceEEEe
Confidence 67777775532 223379999999999998 79999999999999999987652 2234457888999995
Q ss_pred ------EccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCC
Q 013578 146 ------FADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGS 219 (440)
Q Consensus 146 ------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (440)
|+|+++.+++++.+ ..+.+|+...... ....+.....+....+.... ....+++++.
T Consensus 119 ~~~~~~~s~~~~~l~~~~~d---~~i~vwd~~~~~~------------~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~ 181 (357)
T 3i2n_A 119 GIGGLGIGEGAPEIVTGSRD---GTVKVWDPRQKDD------------PVANMEPVQGENKRDCWTVA--FGNAYNQEER 181 (357)
T ss_dssp EESGGGCC-CCCEEEEEETT---SCEEEECTTSCSS------------CSEEECCCTTSCCCCEEEEE--EECCCC-CCC
T ss_pred eccccccCCCccEEEEEeCC---CeEEEEeCCCCCC------------cceeccccCCCCCCceEEEE--EEeccCCCCC
Confidence 57899999999877 5677887655320 11111111111111111110 0112467777
Q ss_pred eEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecC---CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee
Q 013578 220 TIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISP---NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK 296 (440)
Q Consensus 220 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 296 (440)
++++++.|+.|++||+++++.... ..+...+.+++|+| ++++|++++.||.|++||++........ ....+.
T Consensus 182 -~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~ 256 (357)
T 3i2n_A 182 -VVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGF---ASVSEK 256 (357)
T ss_dssp -EEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEE---EEEEEE
T ss_pred -EEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccce---eeeccC
Confidence 899999999999999998887544 45678899999999 9999999999999999999876521111 122445
Q ss_pred ccccceEEEEEcCCCC-EEEEEeCCCcEEEEecCccccccCCCCccccc-----cccccCCCCCeeeeeeEEeCCCCCEE
Q 013578 297 GHKSAVTWLCFAPNSE-QIITASKDGTLRVWNINVRYHLDEDPKTLKVL-----PIPLLDSNGATLQYDRLSLSSDGKIL 370 (440)
Q Consensus 297 ~h~~~v~~~~~~p~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~s~~g~~l 370 (440)
+|...|.+++|+|++. +|++++.||.|++||++............... ........+|...|.+++|+|++++|
T Consensus 257 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 336 (357)
T 3i2n_A 257 AHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGL 336 (357)
T ss_dssp CCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTE
T ss_pred CCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeE
Confidence 8999999999999998 89999999999999998654321110000000 01122234566779999999999988
Q ss_pred E-Eec-CCEEEEEEcCCccc
Q 013578 371 A-ATH-GSTLQWLSVETGKV 388 (440)
Q Consensus 371 ~-~~~-~~~i~i~d~~~~~~ 388 (440)
+ +++ |+.|++||+.+.+.
T Consensus 337 ~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 337 CVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEEEETTSEEEEEEECC---
T ss_pred EEEecCCCcEEEEECCCccc
Confidence 7 554 99999999987654
No 103
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-32 Score=246.99 Aligned_cols=278 Identities=10% Similarity=0.137 Sum_probs=201.0
Q ss_pred EEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEec-CCCCCCCceEEEcc-CCCeEEEEeecCCcceEEeeccccccc
Q 013578 98 CFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRIN-LPPGGPPTAVAFAD-NATSIVVATHNLSGCSLYMYGEEKAIS 175 (440)
Q Consensus 98 ~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~-~~~~~~v~~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~ 175 (440)
.|+|+++.+++++ .|+.... ..... .+|.+.|.+++|+| ++++|++++.+ ..+.+|+......
T Consensus 34 ~f~~~~~~~~~~~------~w~~~g~------~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~d---g~v~vwd~~~~~~ 98 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLRGK------LIATLMENEPNSITSSAVSPGETPYLITGSDQ---GVIKIWNLKEIIV 98 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCCCC------EEEEECTTTTSCEEEEEEECSSSCEEEEEETT---SEEEEEEHHHHHT
T ss_pred hcCCccccccccc------cccccce------EEeeeccCCCCceEEEEECCCCCCEEEEecCC---ceEEEeECccccc
Confidence 4788888888765 3764421 33334 67889999999999 99999999977 5777887654210
Q ss_pred cccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCC---CCceeeeeeC-----
Q 013578 176 TNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK---TGKLLGNVDT----- 247 (440)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~---~~~~~~~~~~----- 247 (440)
.... .....+ .|.. ....+.+++++. +|++++.|+.|++||+. +++....+..
T Consensus 99 ~~~~-------~~~~~~----~h~~-------~v~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~ 159 (437)
T 3gre_A 99 GEVY-------SSSLTY----DCSS-------TVTQITMIPNFD-AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRK 159 (437)
T ss_dssp TCCC-------SCSEEE----ECSS-------CEEEEEECTTSS-EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred Cccc-------ceeeec----cCCC-------CEEEEEEeCCCC-EEEEEeCCCEEEEEEeccccCCceeeccccceeEE
Confidence 0000 000000 1111 122344567777 99999999999999994 5555443322
Q ss_pred -------CCCcccEEE--ecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec--cccceEEEEEcCCCCEEEE
Q 013578 248 -------NQLKNNMAA--ISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG--HKSAVTWLCFAPNSEQIIT 316 (440)
Q Consensus 248 -------~~~~v~~~~--~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~l~s 316 (440)
+...+.++. +++++++|++|+.||.|++||++..+ .+..+.+ |.+.|++++|+|++.+|++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~h~~~v~~~~~s~~~~~l~s 231 (437)
T 3gre_A 160 INLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE--------RLQIIENSPRHGAVSSICIDEECCVLIL 231 (437)
T ss_dssp EEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC--------EEEEEECCGGGCCEEEEEECTTSCEEEE
T ss_pred EEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe--------eeEEEccCCCCCceEEEEECCCCCEEEE
Confidence 334455555 56789999999999999999997655 5667777 8999999999999999999
Q ss_pred EeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEE----eCCCCCEEEEec-CCEEEEEEcCCccchhh
Q 013578 317 ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS----LSSDGKILAATH-GSTLQWLSVETGKVLDT 391 (440)
Q Consensus 317 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~ 391 (440)
++.||.|++||++++..+.. + ...+...|.+++ |++++.+|++++ |+.|++||+.+++.+..
T Consensus 232 ~~~dg~i~iwd~~~~~~~~~-------~------~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 298 (437)
T 3gre_A 232 GTTRGIIDIWDIRFNVLIRS-------W------SFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYA 298 (437)
T ss_dssp EETTSCEEEEETTTTEEEEE-------E------BCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEE
T ss_pred EcCCCeEEEEEcCCccEEEE-------E------ecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEE
Confidence 99999999999986543311 0 013345688894 456788998876 89999999998886655
Q ss_pred hh-----------------------cc--ccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 392 AE-----------------------KA--HEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 392 ~~-----------------------~~--h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
+. .+ |...|++++|+ ++ .+|++|+.||.|++||+.++++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~--------~~l~s~~~d~~i~~wd~~~~~~ 362 (437)
T 3gre_A 299 FINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND--------KILLTDEATSSIVMFSLNELSS 362 (437)
T ss_dssp EESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT--------EEEEEEGGGTEEEEEETTCGGG
T ss_pred EEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc--------eEEEecCCCCeEEEEECCCccc
Confidence 42 11 66778888998 55 7999999999999999988763
No 104
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-30 Score=232.08 Aligned_cols=234 Identities=18% Similarity=0.237 Sum_probs=188.1
Q ss_pred CCCCCCCCCCcccCccc------cccccccCcceeEEEEccC--CCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCC
Q 013578 67 SHSHGDKDQNKRHHPLD------VNTLKGHGDSVTGLCFSSD--GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG 138 (440)
Q Consensus 67 ~~~~~~~~~~~~~~~~~------~~~l~~H~~~V~~l~~s~d--g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~ 138 (440)
..+++..++.+++|... +..+.+|.+.|++++|+++ +++|++|+.||.|++||+.++.. ........|.
T Consensus 25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~---~~~~~~~~~~ 101 (379)
T 3jrp_A 25 RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW---SQIAVHAVHS 101 (379)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE---EEEEEECCCS
T ss_pred EEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce---eEeeeecCCC
Confidence 34566678888888653 5678899999999999987 99999999999999999987642 2344555677
Q ss_pred CCCceEEEccC--CCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCC
Q 013578 139 GPPTAVAFADN--ATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA 216 (440)
Q Consensus 139 ~~v~~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (440)
..|.+++|+|+ +.
T Consensus 102 ~~v~~~~~~~~~~~~----------------------------------------------------------------- 116 (379)
T 3jrp_A 102 ASVNSVQWAPHEYGP----------------------------------------------------------------- 116 (379)
T ss_dssp SCEEEEEECCGGGCS-----------------------------------------------------------------
T ss_pred cceEEEEeCCCCCCC-----------------------------------------------------------------
Confidence 88999999886 33
Q ss_pred CCCeEEEEeeCCceEEEEeCCCCc--eeeeeeCCCCcccEEEecC-------------CCCeEEEEecCCCEEEEEeEec
Q 013578 217 DGSTIIASCSEGTDISIWHGKTGK--LLGNVDTNQLKNNMAAISP-------------NGRFLAAAAFTADVKVWEIVYS 281 (440)
Q Consensus 217 ~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~-------------~~~~l~~~~~dg~i~i~d~~~~ 281 (440)
++++++.|+.|++||+.++. ....+..|...+.+++|+| ++++|++++.||.|++||++..
T Consensus 117 ----~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 192 (379)
T 3jrp_A 117 ----LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD 192 (379)
T ss_dssp ----EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETT
T ss_pred ----EEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCC
Confidence 78888999999999998873 3455678889999999999 6999999999999999999865
Q ss_pred CCCceeeeeeeeeeeccccceEEEEEcCC---CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeee
Q 013578 282 KDGLVKAVTSVMQLKGHKSAVTWLCFAPN---SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQY 358 (440)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 358 (440)
. ........+.+|...|.+++|+|+ +.+|++++.||.|++||+++.... ..........+...|
T Consensus 193 ~----~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~~~~~v 259 (379)
T 3jrp_A 193 A----QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP---------WKKTLLKEEKFPDVL 259 (379)
T ss_dssp T----TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC---------CEEEESSSSCCSSCE
T ss_pred C----cceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc---------ceeeeeccccCCCcE
Confidence 4 233356678889999999999999 899999999999999999865311 001122233456678
Q ss_pred eeEEeCCCCCEEEEe-cCCEEEEEEcCC
Q 013578 359 DRLSLSSDGKILAAT-HGSTLQWLSVET 385 (440)
Q Consensus 359 ~~~~~s~~g~~l~~~-~~~~i~i~d~~~ 385 (440)
.+++|+|+|++|+++ .|+.|++|++..
T Consensus 260 ~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 260 WRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp EEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred EEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 999999999999876 489999999873
No 105
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.98 E-value=6.1e-31 Score=236.01 Aligned_cols=258 Identities=16% Similarity=0.128 Sum_probs=182.9
Q ss_pred CCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCC
Q 013578 137 PGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA 216 (440)
Q Consensus 137 ~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (440)
+.++|.+++|+|++++|++++.+ ..+.+|+...... .. ......|...+ ..+.++|
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d---~~i~iw~~~~~~~----~~----------~~~~~~h~~~v-------~~~~~s~ 65 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTAT---NQVELYEQDGNGW----KH----------ARTFSDHDKIV-------TCVDWAP 65 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSS---SCBCEEEEETTEE----EE----------CCCBCCCSSCE-------EEEEECT
T ss_pred CCCcEEEEEECCCCCEEEEecCC---CEEEEEEccCCce----EE----------EEEEecCCceE-------EEEEEeC
Confidence 44789999999999999998776 3455555443200 00 00011122211 2233478
Q ss_pred CCCeEEEEeeCCceEEEEeCCCCc---eeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeee
Q 013578 217 DGSTIIASCSEGTDISIWHGKTGK---LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM 293 (440)
Q Consensus 217 ~~~~~l~s~~~d~~i~vwd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 293 (440)
+++ +|++++.|+.|++||+.+++ ....+..|...+.+++|+|++++|++++.|+.|++||++.... .....
T Consensus 66 ~~~-~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----~~~~~ 139 (377)
T 3dwl_C 66 KSN-RIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND-----WWVSK 139 (377)
T ss_dssp TTC-CEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC----------CCCCE
T ss_pred CCC-EEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc-----ceeee
Confidence 877 89999999999999999877 6677778999999999999999999999999999999976541 11345
Q ss_pred eeec-cccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccc----cccccccCCCCCeeeeeeEEeCCCCC
Q 013578 294 QLKG-HKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLK----VLPIPLLDSNGATLQYDRLSLSSDGK 368 (440)
Q Consensus 294 ~~~~-h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~s~~g~ 368 (440)
.+.+ |...|.+++|+|++++|++++.|+.|++||++............. ......... +|...|.+++|+|+++
T Consensus 140 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~ 218 (377)
T 3dwl_C 140 HLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN 218 (377)
T ss_dssp EECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS
T ss_pred EeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC
Confidence 6666 999999999999999999999999999999975432111000000 001111222 6677799999999999
Q ss_pred EEEEec-CCEEEEEEcCCccc----hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 369 ILAATH-GSTLQWLSVETGKV----LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 369 ~l~~~~-~~~i~i~d~~~~~~----~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
+|++++ |+.|++||+.+++. +..+ .+|...|.+++|+|++ .+|++|+.|+.+ +|+..
T Consensus 219 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~--------~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 219 ALAYAGHDSSVTIAYPSAPEQPPRALITV-KLSQLPLRSLLWANES--------AIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp CEEEEETTTEEC-CEECSTTSCEEECCCE-ECSSSCEEEEEEEETT--------EEEEEESSSSEE-EECCC
T ss_pred EEEEEeCCCcEEEEECCCCCCcceeeEee-cCCCCceEEEEEcCCC--------CEEEEEcCCcEE-EEEeC
Confidence 999865 89999999999987 6777 5899999999999998 889888866655 66654
No 106
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.98 E-value=4e-31 Score=236.15 Aligned_cols=274 Identities=13% Similarity=0.201 Sum_probs=198.6
Q ss_pred CCCCcccCccc----cccccc-----cCcceeEEEEccC----CCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCC
Q 013578 73 KDQNKRHHPLD----VNTLKG-----HGDSVTGLCFSSD----GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGG 139 (440)
Q Consensus 73 ~~~~~~~~~~~----~~~l~~-----H~~~V~~l~~s~d----g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~ 139 (440)
.++.+++|... +..+.. |.+.|++++|+|+ |++|++|+.||.|++||+.++. .......|..
T Consensus 42 ~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-----~~~~~~~~~~ 116 (366)
T 3k26_A 42 GSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ-----CIKHYVGHGN 116 (366)
T ss_dssp ETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC-----EEEEEESCCS
T ss_pred CCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce-----EeeeecCCCC
Confidence 34456666442 333443 6688999999999 6799999999999999998764 3344457889
Q ss_pred CCceEEEcc-CCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCC
Q 013578 140 PPTAVAFAD-NATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADG 218 (440)
Q Consensus 140 ~v~~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (440)
.|.+++|+| ++..+++++.+ ..+.+|+......... +.....+...+ ..+.+++++
T Consensus 117 ~i~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~-------------~~~~~~~~~~v-------~~~~~~~~~ 173 (366)
T 3k26_A 117 AINELKFHPRDPNLLLSVSKD---HALRLWNIQTDTLVAI-------------FGGVEGHRDEV-------LSADYDLLG 173 (366)
T ss_dssp CEEEEEECSSCTTEEEEEETT---SCEEEEETTTTEEEEE-------------ECSTTSCSSCE-------EEEEECTTS
T ss_pred cEEEEEECCCCCCEEEEEeCC---CeEEEEEeecCeEEEE-------------ecccccccCce-------eEEEECCCC
Confidence 999999999 88999998877 4677777654321111 00001111111 223347778
Q ss_pred CeEEEEeeCCceEEEEeCCCCceeeeeeC----------------------------CCCcccEEEecCCCCeEEEEecC
Q 013578 219 STIIASCSEGTDISIWHGKTGKLLGNVDT----------------------------NQLKNNMAAISPNGRFLAAAAFT 270 (440)
Q Consensus 219 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~----------------------------~~~~v~~~~~s~~~~~l~~~~~d 270 (440)
. ++++++.|+.|++||+++++....+.. |...|.+++|+ +++|++++.|
T Consensus 174 ~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d 250 (366)
T 3k26_A 174 E-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCE 250 (366)
T ss_dssp S-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSS
T ss_pred C-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecC
Confidence 7 899999999999999998765544433 88899999998 7899999999
Q ss_pred CCEEEEEeEecCCC------ceeeeeeeeeeeccccceEEEEEcCC--CCEEEEEeCCCcEEEEecCccccccCCCCccc
Q 013578 271 ADVKVWEIVYSKDG------LVKAVTSVMQLKGHKSAVTWLCFAPN--SEQIITASKDGTLRVWNINVRYHLDEDPKTLK 342 (440)
Q Consensus 271 g~i~i~d~~~~~~~------~~~~~~~~~~~~~h~~~v~~~~~~p~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 342 (440)
|.|++||++..... .......+..+.+|...|.+++|+|+ +++|++++.||.|++||++++.....
T Consensus 251 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~------ 324 (366)
T 3k26_A 251 NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKA------ 324 (366)
T ss_dssp SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGC------
T ss_pred CEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccc------
Confidence 99999998765421 01122356778889999999999999 99999999999999999987643211
Q ss_pred cccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCC
Q 013578 343 VLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVET 385 (440)
Q Consensus 343 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~ 385 (440)
.........+...|.+++|+|++++|++++ |+.|++||+.+
T Consensus 325 --~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 325 --KCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp --EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred --cceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 000112222356799999999999999865 89999999853
No 107
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-30 Score=227.96 Aligned_cols=266 Identities=14% Similarity=0.196 Sum_probs=203.3
Q ss_pred CCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCce
Q 013578 68 HSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143 (440)
Q Consensus 68 ~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~ 143 (440)
..++..++.++.|.. ....+.+|.+.|.+++|+|++++|++|+.||.|++|++...... ........|...|.+
T Consensus 32 l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~--~~~~~~~~~~~~i~~ 109 (313)
T 3odt_A 32 VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGE--DPLYTLIGHQGNVCS 109 (313)
T ss_dssp EEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTS--CC-CEECCCSSCEEE
T ss_pred EEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCC--CcccchhhcccCEEE
Confidence 466677888888865 35667889999999999999999999999999999999865432 223445678889999
Q ss_pred EEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCC-CCCeEE
Q 013578 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA-DGSTII 222 (440)
Q Consensus 144 v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 222 (440)
++| +++.+++++.+ ..+.+|+....... ...+...... +.+.+ ++. ++
T Consensus 110 ~~~--~~~~l~~~~~d---~~i~~~d~~~~~~~------------------~~~~~~~v~~-------~~~~~~~~~-~l 158 (313)
T 3odt_A 110 LSF--QDGVVISGSWD---KTAKVWKEGSLVYN------------------LQAHNASVWD-------AKVVSFSEN-KF 158 (313)
T ss_dssp EEE--ETTEEEEEETT---SEEEEEETTEEEEE------------------EECCSSCEEE-------EEEEETTTT-EE
T ss_pred EEe--cCCEEEEEeCC---CCEEEEcCCcEEEe------------------cccCCCceeE-------EEEccCCCC-EE
Confidence 999 57788888877 46777762222110 0111111111 11233 555 89
Q ss_pred EEeeCCceEEEEeCCCCceeeeeeC-CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccc
Q 013578 223 ASCSEGTDISIWHGKTGKLLGNVDT-NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSA 301 (440)
Q Consensus 223 ~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~ 301 (440)
++++.|+.|++|| .++....+.. +...+.+++|+|++. +++++.||.|++||++.++ .+..+.+|...
T Consensus 159 ~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~ 227 (313)
T 3odt_A 159 LTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGD--------VLRTYEGHESF 227 (313)
T ss_dssp EEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCC--------EEEEEECCSSC
T ss_pred EEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchh--------hhhhhhcCCce
Confidence 9999999999999 4566666666 888999999999998 9999999999999997654 67778899999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEE
Q 013578 302 VTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWL 381 (440)
Q Consensus 302 v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~ 381 (440)
|.+++|+|++ .|++++.||.|++||++++.... ....+...|.+++|+|++++++++.|+.|++|
T Consensus 228 i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~--------------~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw 292 (313)
T 3odt_A 228 VYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQ--------------VITLPAISIWSVDCMSNGDIIVGSSDNLVRIF 292 (313)
T ss_dssp EEEEEECTTS-CEEEEETTSEEEEECTTTCCEEE--------------EEECSSSCEEEEEECTTSCEEEEETTSCEEEE
T ss_pred EEEEEEecCC-CEEEEecCCEEEEEECCCCceeE--------------EEeccCceEEEEEEccCCCEEEEeCCCcEEEE
Confidence 9999999999 69999999999999998764321 11233456899999999998888889999999
Q ss_pred EcCCccchhhh
Q 013578 382 SVETGKVLDTA 392 (440)
Q Consensus 382 d~~~~~~~~~~ 392 (440)
|+.+++.....
T Consensus 293 ~~~~~~~~~~~ 303 (313)
T 3odt_A 293 SQEKSRWASED 303 (313)
T ss_dssp ESCGGGCCC--
T ss_pred eCCCCceeehh
Confidence 99998876654
No 108
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=3.5e-30 Score=234.16 Aligned_cols=276 Identities=14% Similarity=0.223 Sum_probs=192.4
Q ss_pred CCCCcccCccc----cc--cccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEE
Q 013578 73 KDQNKRHHPLD----VN--TLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAF 146 (440)
Q Consensus 73 ~~~~~~~~~~~----~~--~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 146 (440)
.|.++++|+.. ++ .+.+|.+.|++|+|+|||++||+|+.||+|+|||+.++. .......|...+.++++
T Consensus 123 ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~-----~~~~~~~h~~~v~~~s~ 197 (420)
T 4gga_A 123 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-----RLRNMTSHSARVGSLSW 197 (420)
T ss_dssp ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEE
T ss_pred eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc-----EEEEEeCCCCceEEEee
Confidence 36677777643 23 345788999999999999999999999999999998764 44556678788877776
Q ss_pred ccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEee
Q 013578 147 ADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCS 226 (440)
Q Consensus 147 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 226 (440)
++..+++++.+ ..+.+|+....... ......|.... ....+.+++. ++++++
T Consensus 198 --~~~~l~sgs~d---~~i~~~d~~~~~~~---------------~~~~~~h~~~~-------~~~~~~~~g~-~l~s~~ 249 (420)
T 4gga_A 198 --NSYILSSGSRS---GHIHHHDVRVAEHH---------------VATLSGHSQEV-------CGLRWAPDGR-HLASGG 249 (420)
T ss_dssp --ETTEEEEEETT---SEEEEEETTSSSCE---------------EEEEECCSSCE-------EEEEECTTSS-EEEEEE
T ss_pred --CCCEEEEEeCC---CceeEeeeccccee---------------eEEecccccce-------eeeeecCCCC-eeeeee
Confidence 56788888776 45555543322100 00011111111 2233467777 899999
Q ss_pred CCceEEEEeCCCCc----eeeeeeCCCCcccEEEecCCCC-eEEE--EecCCCEEEEEeEecCCCceeeeeeeeeeeccc
Q 013578 227 EGTDISIWHGKTGK----LLGNVDTNQLKNNMAAISPNGR-FLAA--AAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK 299 (440)
Q Consensus 227 ~d~~i~vwd~~~~~----~~~~~~~~~~~v~~~~~s~~~~-~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~ 299 (440)
.|+.|++|+..+++ .+.....+...|.+++|+|.+. ++++ |+.|+.|++||+..+. ....+. +.
T Consensus 250 ~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~--------~~~~~~-~~ 320 (420)
T 4gga_A 250 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA--------CLSAVD-AH 320 (420)
T ss_dssp TTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE--------EEEEEE-CS
T ss_pred ccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc--------cceeec-cc
Confidence 99999999998765 3456677888999999999654 5554 4579999999987654 445555 44
Q ss_pred cceEEEEEcCCCCEEEEEe--CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CC
Q 013578 300 SAVTWLCFAPNSEQIITAS--KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GS 376 (440)
Q Consensus 300 ~~v~~~~~~p~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~ 376 (440)
..+.++.|+|++..+++++ .|+.|++||+.++.++ ....+|...|.+++|+|||++|++|+ |+
T Consensus 321 ~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v--------------~~l~gH~~~V~~l~~spdg~~l~S~s~D~ 386 (420)
T 4gga_A 321 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV--------------AELKGHTSRVLSLTMSPDGATVASAAADE 386 (420)
T ss_dssp SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE--------------EEECCCSSCEEEEEECTTSSCEEEEETTT
T ss_pred cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE--------------EEEcCCCCCEEEEEEcCCCCEEEEEecCC
Confidence 6789999999999888765 7999999999876443 22346778899999999999999865 99
Q ss_pred EEEEEEcCCccchhhhhccccCCeEEEEe
Q 013578 377 TLQWLSVETGKVLDTAEKAHEGEITCMAW 405 (440)
Q Consensus 377 ~i~i~d~~~~~~~~~~~~~h~~~v~~v~~ 405 (440)
.|++||+.+.......+ .+...+....+
T Consensus 387 tvriWdv~~~~~~~~~~-~~~~~~~~~s~ 414 (420)
T 4gga_A 387 TLRLWRCFELDPARRRE-REKASAAKSSL 414 (420)
T ss_dssp EEEEECCSCSSCC----------------
T ss_pred eEEEEECCCCCccchhh-hccCCcccccc
Confidence 99999998776665543 34444433333
No 109
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1.2e-29 Score=232.01 Aligned_cols=290 Identities=12% Similarity=0.084 Sum_probs=212.5
Q ss_pred ccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcce
Q 013578 85 NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCS 164 (440)
Q Consensus 85 ~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~ 164 (440)
..+..| ..+.+++|+|++.++++++.|+.|++||+.+++............|...+.+++|++++..+++++.+ ..
T Consensus 117 ~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d---~~ 192 (433)
T 3bws_A 117 SRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA---NA 192 (433)
T ss_dssp EEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG---TE
T ss_pred EEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC---CE
Confidence 334444 45679999998888899999999999999876532111111233667789999999999988888766 56
Q ss_pred EEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeee
Q 013578 165 LYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN 244 (440)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 244 (440)
+.+|+......... + ..+. .....+.++++++.++++++.++.|++||+.+++.+..
T Consensus 193 v~~~d~~~~~~~~~-------------~---~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~ 249 (433)
T 3bws_A 193 VHVFDLKTLAYKAT-------------V---DLTG-------KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK 249 (433)
T ss_dssp EEEEETTTCCEEEE-------------E---ECSS-------SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEEECCCceEEEE-------------E---cCCC-------CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE
Confidence 77776543211100 0 0001 11223445788886667777899999999999988887
Q ss_pred eeCCCCcccEEEecCCCCeEEEEe--------cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEE-E
Q 013578 245 VDTNQLKNNMAAISPNGRFLAAAA--------FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQI-I 315 (440)
Q Consensus 245 ~~~~~~~v~~~~~s~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l-~ 315 (440)
+..+ ..+.+++|+|++++|++++ .||.|++||+..++ ... ...|...+.+++|+|+++.+ +
T Consensus 250 ~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~--------~~~-~~~~~~~~~~~~~~~~g~~l~~ 319 (433)
T 3bws_A 250 TDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK--------LID-TIGPPGNKRHIVSGNTENKIYV 319 (433)
T ss_dssp CCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE--------EEE-EEEEEECEEEEEECSSTTEEEE
T ss_pred ecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc--------EEe-eccCCCCcceEEECCCCCEEEE
Confidence 7664 4588999999999999988 48899999986543 222 23466689999999999754 6
Q ss_pred EEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec----------------CCEEE
Q 013578 316 TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH----------------GSTLQ 379 (440)
Q Consensus 316 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----------------~~~i~ 379 (440)
+++.|+.|++||++++..... + .+...+..++|+|+|++++++. ||.|+
T Consensus 320 ~~~~~~~v~v~d~~~~~~~~~-------~--------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~ 384 (433)
T 3bws_A 320 SDMCCSKIEVYDLKEKKVQKS-------I--------PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVY 384 (433)
T ss_dssp EETTTTEEEEEETTTTEEEEE-------E--------ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEE
T ss_pred EecCCCEEEEEECCCCcEEEE-------e--------cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEE
Confidence 668999999999986543211 1 0123467899999999887754 35999
Q ss_pred EEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeC-CCeEEEEeCCC
Q 013578 380 WLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSV-DKKVKLWLAPS 436 (440)
Q Consensus 380 i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~-Dg~i~vw~~~~ 436 (440)
+||..+++.+..+. +...+.+++|+|++ ++|++++. |+.|++|+++.
T Consensus 385 ~~d~~~~~~~~~~~--~~~~~~~~~~s~dg--------~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 385 VIDTTTDTVKEFWE--AGNQPTGLDVSPDN--------RYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEETTTTEEEEEEE--CSSSEEEEEECTTS--------CEEEEEETTTTEEEEEEETT
T ss_pred EEECCCCcEEEEec--CCCCCceEEEcCCC--------CEEEEEECCCCeEEEEEecC
Confidence 99999999888774 45679999999998 78887765 99999999874
No 110
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=7.8e-30 Score=226.13 Aligned_cols=251 Identities=17% Similarity=0.204 Sum_probs=188.7
Q ss_pred CCCCCCCCCCcccCcc--------ccccccccCcceeEEEEcc--CCCEEEEeeCCCcEEEEecCCCCCc----ceeeEE
Q 013578 67 SHSHGDKDQNKRHHPL--------DVNTLKGHGDSVTGLCFSS--DGKCLATACADGVIRVHKLDDASSK----SFKFLR 132 (440)
Q Consensus 67 ~~~~~~~~~~~~~~~~--------~~~~l~~H~~~V~~l~~s~--dg~~l~t~s~dg~v~vW~~~~~~~~----~~~~~~ 132 (440)
..+++..++.+++|.. .+..+.+|.+.|++++|+| |+++|++|+.||+|++||+..+... ......
T Consensus 25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~ 104 (351)
T 3f3f_A 25 HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLC 104 (351)
T ss_dssp EEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEE
T ss_pred EEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceee
Confidence 3456677777877753 3556789999999999999 6999999999999999999876432 123445
Q ss_pred ecCCCCCCCceEEEccC--CCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeeccc
Q 013578 133 INLPPGGPPTAVAFADN--ATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGAS 210 (440)
Q Consensus 133 ~~~~~~~~v~~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (440)
....|...|.+++|+|+ +.
T Consensus 105 ~~~~~~~~v~~~~~~~~~~~~----------------------------------------------------------- 125 (351)
T 3f3f_A 105 TLNDSKGSLYSVKFAPAHLGL----------------------------------------------------------- 125 (351)
T ss_dssp EECCCSSCEEEEEECCGGGCS-----------------------------------------------------------
T ss_pred eecccCCceeEEEEcCCCCCc-----------------------------------------------------------
Confidence 55677888999999876 43
Q ss_pred ccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeee-------------CCCCcccEEEecCC---CCeEEEEecCCCEE
Q 013578 211 ATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD-------------TNQLKNNMAAISPN---GRFLAAAAFTADVK 274 (440)
Q Consensus 211 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-------------~~~~~v~~~~~s~~---~~~l~~~~~dg~i~ 274 (440)
++++++.|+.|++||+++++.+..+. .+...+.+++|+|+ +.+|++++.++.+.
T Consensus 126 ----------~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 195 (351)
T 3f3f_A 126 ----------KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAII 195 (351)
T ss_dssp ----------EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEE
T ss_pred ----------EEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEE
Confidence 67888889999999998877654433 46778999999997 99999999999997
Q ss_pred EEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCC----CEEEEEeCCCcEEEEecCccccccCCCCcccc-------
Q 013578 275 VWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS----EQIITASKDGTLRVWNINVRYHLDEDPKTLKV------- 343 (440)
Q Consensus 275 i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------- 343 (440)
+|+..... ......+.+|...|++++|+|++ .+|++++.||.|++||++..............
T Consensus 196 ~~~~~~~~------~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 269 (351)
T 3f3f_A 196 YQRGKDGK------LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNS 269 (351)
T ss_dssp EEECTTSC------EEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------
T ss_pred EEccCCCc------eeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCC
Confidence 77654332 22466778899999999999998 89999999999999999865322110000000
Q ss_pred -------------------------ccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhh
Q 013578 344 -------------------------LPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTA 392 (440)
Q Consensus 344 -------------------------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~ 392 (440)
.........+|...|.+++|+|++++|++++ |+.|++|++.+++.+..+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 270 ADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp ---------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred cccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 0012223345677899999999999999876 899999999988655443
No 111
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=1.2e-29 Score=224.48 Aligned_cols=259 Identities=10% Similarity=0.091 Sum_probs=190.0
Q ss_pred EEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeeccc
Q 013578 131 LRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGAS 210 (440)
Q Consensus 131 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (440)
.....+|.+.|.+++|+|+++++++++.+ ..+.+|+....... ........+.. ...
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d---~~v~iw~~~~~~~~-------------~~~~~~~~~~~-------~v~ 60 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWD---GSLTVYKFDIQAKN-------------VDLLQSLRYKH-------PLL 60 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETT---SEEEEEEEETTTTE-------------EEEEEEEECSS-------CEE
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCC---CeEEEEEeCCCCcc-------------ccceeeeecCC-------ceE
Confidence 34455788999999999999999999877 46777765443100 00000011111 122
Q ss_pred ccccCCCCCeEEEEeeCCceEEEEeC-CCCceeeeeeC--CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCcee
Q 013578 211 ATYGTADGSTIIASCSEGTDISIWHG-KTGKLLGNVDT--NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVK 287 (440)
Q Consensus 211 ~~~~~~~~~~~l~s~~~d~~i~vwd~-~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 287 (440)
.+.++++++.++++++.|+.|++||+ .+++. ..+.. |...|.+++|+| +++|++++.|+.|++||++........
T Consensus 61 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~ 138 (342)
T 1yfq_A 61 CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIA 138 (342)
T ss_dssp EEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEE
T ss_pred EEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccc
Confidence 23346665537889999999999999 77755 66777 899999999999 999999999999999998751100000
Q ss_pred -eeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCc-cccccCCCCccccccccccCCCCCeeeeeeEEeCC
Q 013578 288 -AVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINV-RYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS 365 (440)
Q Consensus 288 -~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 365 (440)
....+..+. |...|.+++|+|++ |++++.|+.|++||+++ .... . ......+...+.+++|+|
T Consensus 139 ~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~------~------~~~~~~~~~~i~~i~~~~ 203 (342)
T 1yfq_A 139 VKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDN------G------TIEESGLKYQIRDVALLP 203 (342)
T ss_dssp EEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCC------C------EEEECSCSSCEEEEEECS
T ss_pred ccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCcccccc------c------eeeecCCCCceeEEEECC
Confidence 011344455 88999999999887 99999999999999986 3211 0 001123345688999999
Q ss_pred -CCCEEEEec-CCEEEEEEcCCc------cchhhhhccccC---------CeEEEEecCCCCCCCCCcceEEEEeeCCCe
Q 013578 366 -DGKILAATH-GSTLQWLSVETG------KVLDTAEKAHEG---------EITCMAWAPKTIPMGNQQVSVLATSSVDKK 428 (440)
Q Consensus 366 -~g~~l~~~~-~~~i~i~d~~~~------~~~~~~~~~h~~---------~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~ 428 (440)
+++++++++ ++.|++|+.... +....+ ..|.. .|.+++|+|++ .+|++++.||.
T Consensus 204 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~--------~~l~~~~~dg~ 274 (342)
T 1yfq_A 204 KEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF-RCHRLNLKDTNLAYPVNSIEFSPRH--------KFLYTAGSDGI 274 (342)
T ss_dssp GGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE-ECCCCCTTCCSSCCCEEEEEECTTT--------CCEEEEETTSC
T ss_pred CCCCEEEEEecCCcEEEEEEcCCCcccccccceee-ecccccccccccceeEEEEEEcCCC--------CEEEEecCCce
Confidence 999988865 899999999887 555555 46654 99999999998 89999999999
Q ss_pred EEEEeCCCCC
Q 013578 429 VKLWLAPSLE 438 (440)
Q Consensus 429 i~vw~~~~~~ 438 (440)
|++||+.+++
T Consensus 275 i~vwd~~~~~ 284 (342)
T 1yfq_A 275 ISCWNLQTRK 284 (342)
T ss_dssp EEEEETTTTE
T ss_pred EEEEcCccHh
Confidence 9999998764
No 112
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.1e-30 Score=232.09 Aligned_cols=288 Identities=10% Similarity=0.045 Sum_probs=204.7
Q ss_pred CCCCCCCCCCCCCCcccCccccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCc
Q 013578 63 SKPHSHSHGDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPT 142 (440)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~ 142 (440)
+.-...++++.|.+++ .+...+.+.||...|++++|+|+| .++.+.+|+.+... .....+...|.
T Consensus 25 pDG~~iASas~D~TV~-d~~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-------~~~~~~~~~V~ 89 (588)
T 2j04_A 25 RDGTLYLTTFPDISIG-QPKYAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-------LLNSQPVCYPR 89 (588)
T ss_dssp TTSCEEEECSSSEEEE-EECCCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC-------SSTTSCSCCEE
T ss_pred CCCCEEEEEcCCceee-cccccceecCCCccEEEEEECCCC-------CcceEEEEeCCCce-------EeecCCCCcEE
Confidence 3344457778888888 455567778999999999999999 56666666543221 12224468899
Q ss_pred eEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEE
Q 013578 143 AVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTII 222 (440)
Q Consensus 143 ~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 222 (440)
+++|+|+|+.|++++.+ ..+.+|+......... +... ........+.++|||+ +|
T Consensus 90 ~vawSPdG~~LAs~s~d---g~V~iwd~~~~l~~l~-------------------~~~~--~~~~sv~svafSPDG~-~L 144 (588)
T 2j04_A 90 VCKPSPIDDWMAVLSNN---GNVSVFKDNKMLTNLD-------------------SKGN--LSSRTYHCFEWNPIES-SI 144 (588)
T ss_dssp EEEECSSSSCEEEEETT---SCEEEEETTEEEEECC-------------------CSSC--STTTCEEEEEECSSSS-CE
T ss_pred EEEECCCCCEEEEEeCC---CcEEEEeCCceeeecc-------------------CCCc--cccccEEEEEEcCCCC-EE
Confidence 99999999999999988 4566676433111100 0000 0000112455689999 99
Q ss_pred EEeeCCceEEEEeCCCCce-------eeee----eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeee
Q 013578 223 ASCSEGTDISIWHGKTGKL-------LGNV----DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTS 291 (440)
Q Consensus 223 ~s~~~d~~i~vwd~~~~~~-------~~~~----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 291 (440)
++|+.||+|++||+.++.. +..+ .+|...|.+++|+|+| +++++.|+.|++||+..+... ..
T Consensus 145 Asgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~-----~~ 217 (588)
T 2j04_A 145 VVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ-----PV 217 (588)
T ss_dssp EEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC-----CC
T ss_pred EEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc-----cc
Confidence 9999999999999998753 5665 5567799999999999 888899999999998654410 01
Q ss_pred eeee-eccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe--CCCCC
Q 013578 292 VMQL-KGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL--SSDGK 368 (440)
Q Consensus 292 ~~~~-~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~g~ 368 (440)
...+ .+|...|.+++|+ |..||+++ +++|++||+.++... .. ..+|...+..++| +|++.
T Consensus 218 ~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~-------------~~-~~gh~~~V~~va~~~s~d~~ 280 (588)
T 2j04_A 218 SRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSIS-------------SL-KTGSLENFHIIPLNHEKEST 280 (588)
T ss_dssp EEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEE-------------EE-ECSCCSCCCEEEETTCSSCE
T ss_pred eeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEE-------------EE-EcCCCceEEEEEeeeCCCCC
Confidence 2345 3788999999999 68899887 699999999865431 01 1156777899999 99999
Q ss_pred EEEEec-CCEEEEEEcC------Cccc-----------------hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEee
Q 013578 369 ILAATH-GSTLQWLSVE------TGKV-----------------LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSS 424 (440)
Q Consensus 369 ~l~~~~-~~~i~i~d~~------~~~~-----------------~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~ 424 (440)
.++++. +|. ++|... .+.. +..+ .+...|.+++|+|+| ..+|+++
T Consensus 281 ~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~--~~~~~I~~va~SPdG--------~~lA~~~ 349 (588)
T 2j04_A 281 ILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNY--ETTLVIHGISLSPDG--------YSIAIVY 349 (588)
T ss_dssp EEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSS--CCEEEEEEEEECTTS--------SEEEEEE
T ss_pred EEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeee--ccceEEEEEEECCCC--------CEEEEEE
Confidence 999987 788 888863 1111 1111 124459999999998 8899887
Q ss_pred C
Q 013578 425 V 425 (440)
Q Consensus 425 ~ 425 (440)
.
T Consensus 350 ~ 350 (588)
T 2j04_A 350 D 350 (588)
T ss_dssp E
T ss_pred e
Confidence 5
No 113
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=1.6e-29 Score=231.00 Aligned_cols=284 Identities=15% Similarity=0.253 Sum_probs=196.4
Q ss_pred CCCCCCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCce
Q 013578 68 HSHGDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTA 143 (440)
Q Consensus 68 ~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~ 143 (440)
..++..++.++.|+. .+..+.+|.+.|.+++| ++++|++|+.||+|++||+.++. .......|...|.+
T Consensus 146 l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~ 218 (435)
T 1p22_A 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE-----MLNTLIHHCEAVLH 218 (435)
T ss_dssp EEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC-----EEEEECCCCSCEEE
T ss_pred EEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc-----EEEEEcCCCCcEEE
Confidence 345567788888754 46678899999999999 78999999999999999998765 34555678899999
Q ss_pred EEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEE
Q 013578 144 VAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIA 223 (440)
Q Consensus 144 v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 223 (440)
++|++ ..+++++.+ ..+.+|+........ .......+...+... ..+++ +++
T Consensus 219 l~~~~--~~l~s~s~d---g~i~vwd~~~~~~~~-------------~~~~~~~~~~~v~~~---------~~~~~-~l~ 270 (435)
T 1p22_A 219 LRFNN--GMMVTCSKD---RSIAVWDMASPTDIT-------------LRRVLVGHRAAVNVV---------DFDDK-YIV 270 (435)
T ss_dssp EECCT--TEEEEEETT---SCEEEEECSSSSCCE-------------EEEEECCCSSCEEEE---------EEETT-EEE
T ss_pred EEEcC--CEEEEeeCC---CcEEEEeCCCCCCce-------------eeeEecCCCCcEEEE---------EeCCC-EEE
Confidence 99974 588888876 466777654431110 000011111111111 11455 899
Q ss_pred EeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceE
Q 013578 224 SCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVT 303 (440)
Q Consensus 224 s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~ 303 (440)
+++.|+.|++||+++++.+..+..|...+.++.+ +++++++|+.||.|++||++.+. .+..+.+|...|.
T Consensus 271 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~--------~~~~~~~h~~~v~ 340 (435)
T 1p22_A 271 SASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGA--------CLRVLEGHEELVR 340 (435)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCC--------EEEEECCCSSCEE
T ss_pred EEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCC--------EEEEEeCCcCcEE
Confidence 9999999999999999999999999999999988 47899999999999999997665 6778889999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEE
Q 013578 304 WLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLS 382 (440)
Q Consensus 304 ~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d 382 (440)
+++| ++.+|++|+.||.|++||+++.......... .......+|...|.+++| ++.+|++++ ||.|++||
T Consensus 341 ~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd 411 (435)
T 1p22_A 341 CIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGT-----LCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 411 (435)
T ss_dssp EEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTT-----TEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred EEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccc-----hheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEE
Confidence 9999 7889999999999999999865422111100 012223456677899999 777788766 99999999
Q ss_pred cCCccchhhhhccccCCeEEEEecC
Q 013578 383 VETGKVLDTAEKAHEGEITCMAWAP 407 (440)
Q Consensus 383 ~~~~~~~~~~~~~h~~~v~~v~~~~ 407 (440)
+.+........ ...+..++.|.+
T Consensus 412 ~~~~~~~~~~~--~~~~~~~~~~~~ 434 (435)
T 1p22_A 412 FLNDPAAQAEP--PRSPSRTYTYIS 434 (435)
T ss_dssp -------------------------
T ss_pred CCCCCCcccCC--CCCCccceeeec
Confidence 98877655442 334455555543
No 114
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-29 Score=245.49 Aligned_cols=234 Identities=18% Similarity=0.221 Sum_probs=190.2
Q ss_pred CCCCCCCCCCcccCcc------ccccccccCcceeEEEEccC--CCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCC
Q 013578 67 SHSHGDKDQNKRHHPL------DVNTLKGHGDSVTGLCFSSD--GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG 138 (440)
Q Consensus 67 ~~~~~~~~~~~~~~~~------~~~~l~~H~~~V~~l~~s~d--g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~ 138 (440)
...++..++.++.|.. .+..+.+|.+.|++++|+|+ +++|++|+.||+|++||+.++.. ........|.
T Consensus 23 ~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~---~~~~~~~~h~ 99 (753)
T 3jro_A 23 RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW---SQIAVHAVHS 99 (753)
T ss_dssp CEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE---EEEEEECCCS
T ss_pred eEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc---cccccccCCC
Confidence 3566777888888864 36678899999999999988 99999999999999999987532 2345556788
Q ss_pred CCCceEEEccC--CCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCC
Q 013578 139 GPPTAVAFADN--ATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA 216 (440)
Q Consensus 139 ~~v~~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (440)
..|.+++|+|+ +.
T Consensus 100 ~~V~~v~~sp~~~~~----------------------------------------------------------------- 114 (753)
T 3jro_A 100 ASVNSVQWAPHEYGP----------------------------------------------------------------- 114 (753)
T ss_dssp SCEEEEEECCGGGCS-----------------------------------------------------------------
T ss_pred CCeEEEEECCCCCCC-----------------------------------------------------------------
Confidence 89999999887 33
Q ss_pred CCCeEEEEeeCCceEEEEeCCCCc--eeeeeeCCCCcccEEEecC-------------CCCeEEEEecCCCEEEEEeEec
Q 013578 217 DGSTIIASCSEGTDISIWHGKTGK--LLGNVDTNQLKNNMAAISP-------------NGRFLAAAAFTADVKVWEIVYS 281 (440)
Q Consensus 217 ~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~-------------~~~~l~~~~~dg~i~i~d~~~~ 281 (440)
++++++.||.|++||+.++. ....+..|...+.+++|+| ++++|++|+.||.|++||++..
T Consensus 115 ----~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~ 190 (753)
T 3jro_A 115 ----LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD 190 (753)
T ss_dssp ----EEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETT
T ss_pred ----EEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCC
Confidence 78888999999999998773 3455677889999999999 5899999999999999999876
Q ss_pred CCCceeeeeeeeeeeccccceEEEEEcCC---CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeee
Q 013578 282 KDGLVKAVTSVMQLKGHKSAVTWLCFAPN---SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQY 358 (440)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 358 (440)
. ........+.+|...|++++|+|+ +.+|++++.||.|++||++++.... .........+...|
T Consensus 191 ~----~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~---------~~~~~~~~~~~~~v 257 (753)
T 3jro_A 191 A----QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW---------KKTLLKEEKFPDVL 257 (753)
T ss_dssp T----TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCC---------BCCBSSSSCCSSCC
T ss_pred c----ccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcc---------eeEEeccCCCCCce
Confidence 4 223356678899999999999999 8999999999999999998653210 01122334456678
Q ss_pred eeEEeCCCCCEEEEec-CCEEEEEEcCC
Q 013578 359 DRLSLSSDGKILAATH-GSTLQWLSVET 385 (440)
Q Consensus 359 ~~~~~s~~g~~l~~~~-~~~i~i~d~~~ 385 (440)
.+++|+|+|+++++++ ||.|++|++.+
T Consensus 258 ~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 258 WRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp CCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred EEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 9999999999999865 89999999874
No 115
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.9e-28 Score=220.88 Aligned_cols=268 Identities=12% Similarity=0.125 Sum_probs=197.8
Q ss_pred CEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccC
Q 013578 104 KCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQS 183 (440)
Q Consensus 104 ~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (440)
.++++++.|+.|++||+.+++. ......+ ..+.+++|+|+++++++++.. ...+.+|+.......
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~-----~~~~~~~-~~~~~~~~s~dg~~l~~~~~~--d~~i~v~d~~~~~~~------- 67 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKV-----TATIPVG-SNPMGAVISPDGTKVYVANAH--SNDVSIIDTATNNVI------- 67 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEE-----EEEEECS-SSEEEEEECTTSSEEEEEEGG--GTEEEEEETTTTEEE-------
T ss_pred EEEEEcCCCCEEEEEECCCCeE-----EEEeecC-CCcceEEECCCCCEEEEECCC--CCeEEEEECCCCeEE-------
Confidence 4688899999999999987642 2222223 568999999999988655432 246777765443111
Q ss_pred CCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCe
Q 013578 184 KLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRF 263 (440)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 263 (440)
..+........+.++|+++.++++++.++.|++||+.+++.+..+..+. .+.+++|+|+++.
T Consensus 68 -----------------~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~ 129 (391)
T 1l0q_A 68 -----------------ATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKK 129 (391)
T ss_dssp -----------------EEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSE
T ss_pred -----------------EEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC-CcceEEECCCCCE
Confidence 0011111233445688999666777788999999999999888877654 6789999999997
Q ss_pred E-EEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEE-EEEeCCCcEEEEecCccccccCCCCcc
Q 013578 264 L-AAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQI-ITASKDGTLRVWNINVRYHLDEDPKTL 341 (440)
Q Consensus 264 l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~ 341 (440)
| ++++.++.|++||+..++ ....+..+ ..+.+++|+|++++| ++++.|+.|++||++++.....
T Consensus 130 l~~~~~~~~~v~~~d~~~~~--------~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~----- 195 (391)
T 1l0q_A 130 LYVTNNGDKTVSVINTVTKA--------VINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT----- 195 (391)
T ss_dssp EEEEETTTTEEEEEETTTTE--------EEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE-----
T ss_pred EEEEeCCCCEEEEEECCCCc--------EEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEE-----
Confidence 7 677789999999986543 34445544 457999999999887 5777899999999987643211
Q ss_pred ccccccccCCCCCeeeeeeEEeCCCCCEEEEe----cCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcc
Q 013578 342 KVLPIPLLDSNGATLQYDRLSLSSDGKILAAT----HGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQV 417 (440)
Q Consensus 342 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~----~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~ 417 (440)
+ .+...+.+++|+|+|++|+++ .++.|++||+.+++.+..+. .| ..+.+++|+|++
T Consensus 196 --~--------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~-~~~~~~~~s~dg-------- 255 (391)
T 1l0q_A 196 --V--------KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP-VG-PDPAGIAVTPDG-------- 255 (391)
T ss_dssp --E--------ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE-CC-SSEEEEEECTTS--------
T ss_pred --E--------ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEe-cC-CCccEEEEccCC--------
Confidence 1 012347789999999988875 47999999999998887774 44 458999999998
Q ss_pred eEE-EEeeCCCeEEEEeCCCCC
Q 013578 418 SVL-ATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 418 ~~l-~t~~~Dg~i~vw~~~~~~ 438 (440)
++| ++++.|+.|++||+.+++
T Consensus 256 ~~l~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 256 KKVYVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp SEEEEEETTTTEEEEEETTTTE
T ss_pred CEEEEEcCCCCEEEEEECCCCc
Confidence 655 677889999999998764
No 116
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=9.7e-29 Score=224.06 Aligned_cols=312 Identities=13% Similarity=0.121 Sum_probs=186.1
Q ss_pred CCCCCCCCCCcccCccc----cccc-------------cccCcceeEEEEcc-CCCEEEEeeCCCcEEEEecCCCCCcce
Q 013578 67 SHSHGDKDQNKRHHPLD----VNTL-------------KGHGDSVTGLCFSS-DGKCLATACADGVIRVHKLDDASSKSF 128 (440)
Q Consensus 67 ~~~~~~~~~~~~~~~~~----~~~l-------------~~H~~~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~~~ 128 (440)
..+++..++.+++|... ...+ .+|.+.|.+++|+| ++.+|++++.||.|++||+.++...
T Consensus 58 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-- 135 (408)
T 4a11_B 58 YMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA-- 135 (408)
T ss_dssp EEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEE--
T ss_pred EEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccc--
Confidence 34566667777777553 1112 36999999999999 7889999999999999999876422
Q ss_pred eeEEecCCCCCCCceEEEccCCC---eEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEE
Q 013578 129 KFLRINLPPGGPPTAVAFADNAT---SIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILT 205 (440)
Q Consensus 129 ~~~~~~~~~~~~v~~v~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (440)
. ...+...+.++.|++.+. .+++++.+ ..+.+|+....... ..+ ..+...
T Consensus 136 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~d~~~~~~~-------------~~~---~~~~~~---- 188 (408)
T 4a11_B 136 ---D-VFNFEETVYSHHMSPVSTKHCLVAVGTRG---PKVQLCDLKSGSCS-------------HIL---QGHRQE---- 188 (408)
T ss_dssp ---E-EEECSSCEEEEEECSSCSSCCEEEEEESS---SSEEEEESSSSCCC-------------EEE---CCCCSC----
T ss_pred ---e-eccCCCceeeeEeecCCCCCcEEEEEcCC---CeEEEEeCCCccee-------------eee---cCCCCc----
Confidence 1 122557889999998544 78888766 45666665433111 000 111111
Q ss_pred eecccccccCCCCCeEEEEeeCCceEEEEeCCCCc-eeeee---------------eCCCCcccEEEecCCCCeEEEEec
Q 013578 206 LFGASATYGTADGSTIIASCSEGTDISIWHGKTGK-LLGNV---------------DTNQLKNNMAAISPNGRFLAAAAF 269 (440)
Q Consensus 206 ~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~---------------~~~~~~v~~~~~s~~~~~l~~~~~ 269 (440)
...+.++|++..++++++.|+.|++||++++. .+..+ ..|...+.+++|+|++++|++++.
T Consensus 189 ---v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 265 (408)
T 4a11_B 189 ---ILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT 265 (408)
T ss_dssp ---EEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET
T ss_pred ---EEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC
Confidence 22334578888679999999999999998765 33333 467788999999999999999999
Q ss_pred CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCcccccccccc
Q 013578 270 TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLL 349 (440)
Q Consensus 270 dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 349 (440)
||.|++||+..+...... ...........+........+..+++++.|+.|++||+.++..+ .
T Consensus 266 dg~i~vwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~--------------~ 328 (408)
T 4a11_B 266 DNRMRLWNSSNGENTLVN---YGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI--------------T 328 (408)
T ss_dssp TSCEEEEETTTCCBCCCC---CCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE--------------E
T ss_pred CCeEEEEECCCCccceec---cccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce--------------e
Confidence 999999998765411000 00000111122222222334556777888999999999876433 1
Q ss_pred CCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCe
Q 013578 350 DSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKK 428 (440)
Q Consensus 350 ~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~ 428 (440)
...+|...|.+++|+|++++|++++ ||.|++||+.+++.+.... .+. ....+.+.. ...+.+++.|+.
T Consensus 329 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-~~~---~~~~~~~~~-------~~~~~~~~~~~~ 397 (408)
T 4a11_B 329 MLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDD-ETT---TKSQLNPAF-------EDAWSSSDEEGG 397 (408)
T ss_dssp EECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-------------------------------------------
T ss_pred eeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCC-ceE---ecccccccc-------ceeecccCccCc
Confidence 2235667799999999999999876 8999999999998876553 222 112333322 145667788999
Q ss_pred EEEEeCCCCC
Q 013578 429 VKLWLAPSLE 438 (440)
Q Consensus 429 i~vw~~~~~~ 438 (440)
+++|+.+..+
T Consensus 398 ~~~W~~~~~~ 407 (408)
T 4a11_B 398 TSAWSHPQFE 407 (408)
T ss_dssp ----------
T ss_pred eeecCCcccC
Confidence 9999987643
No 117
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=4.4e-28 Score=212.07 Aligned_cols=260 Identities=14% Similarity=0.210 Sum_probs=184.6
Q ss_pred CCCCCcccCccc----ccc--ccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEE
Q 013578 72 DKDQNKRHHPLD----VNT--LKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA 145 (440)
Q Consensus 72 ~~~~~~~~~~~~----~~~--l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~ 145 (440)
..|+++++|+.. ++. +.+|...|++++|+|+|++|++|+.||+|++|++.+++ .......|...+. +
T Consensus 42 g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~-----~~~~~~~h~~~~~--~ 114 (318)
T 4ggc_A 42 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-----RLRNMTSHSARVG--S 114 (318)
T ss_dssp EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----EEEEEECCSSCEE--E
T ss_pred EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce-----eEEEecCccceEE--E
Confidence 357888888653 333 45788899999999999999999999999999998764 3344455655554 4
Q ss_pred EccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEe
Q 013578 146 FADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASC 225 (440)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 225 (440)
+++++..+++++.++ .+.++....... .......+.... ....+.+++. +++++
T Consensus 115 ~~~~~~~l~s~~~~~---~~~~~~~~~~~~---------------~~~~~~~~~~~~-------~~~~~~~~~~-~l~s~ 168 (318)
T 4ggc_A 115 LSWNSYILSSGSRSG---HIHHHDVRVAEH---------------HVATLSGHSQEV-------CGLRWAPDGR-HLASG 168 (318)
T ss_dssp EEEETTEEEEEETTS---EEEEEETTSSSC---------------EEEEEECCSSCE-------EEEEECTTSS-EEEEE
T ss_pred eecCCCEEEEEecCC---ceEeeecCCCce---------------eEEEEcCccCce-------EEEEEcCCCC-EEEEE
Confidence 555677888877663 333333222100 000011111111 1223356777 89999
Q ss_pred eCCceEEEEeCCCCce----eeeeeCCCCcccEEEecCCCCeE---EEEecCCCEEEEEeEecCCCceeeeeeeeeeecc
Q 013578 226 SEGTDISIWHGKTGKL----LGNVDTNQLKNNMAAISPNGRFL---AAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH 298 (440)
Q Consensus 226 ~~d~~i~vwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l---~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h 298 (440)
+.|+.|++||+.+++. ......+...+.+++++|++..+ ++++.++.|++||..... ......+
T Consensus 169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~---------~~~~~~~ 239 (318)
T 4ggc_A 169 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA---------CLSAVDA 239 (318)
T ss_dssp ETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC---------EEEEEEC
T ss_pred ecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc---------ccccccc
Confidence 9999999999987653 34445667789999999976543 356778999999976543 2233457
Q ss_pred ccceEEEEEcCCCCEEEEEe--CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-C
Q 013578 299 KSAVTWLCFAPNSEQIITAS--KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-G 375 (440)
Q Consensus 299 ~~~v~~~~~~p~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~ 375 (440)
...+..+.|+|++..+++++ .|+.|++||++++..+ ....+|...|++++|+|+|++|++|+ |
T Consensus 240 ~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~--------------~~l~gH~~~V~~l~~spdg~~l~S~s~D 305 (318)
T 4ggc_A 240 HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV--------------AELKGHTSRVLSLTMSPDGATVASAAAD 305 (318)
T ss_dssp SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE--------------EEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEE--------------EEEcCCCCCEEEEEEcCCCCEEEEEecC
Confidence 78899999999999887665 7999999999876543 12346778899999999999999865 9
Q ss_pred CEEEEEEcCCcc
Q 013578 376 STLQWLSVETGK 387 (440)
Q Consensus 376 ~~i~i~d~~~~~ 387 (440)
+.|++||+.+..
T Consensus 306 ~~v~iWd~~~~d 317 (318)
T 4ggc_A 306 ETLRLWRCFELD 317 (318)
T ss_dssp TEEEEECCSCCC
T ss_pred CeEEEEECCCCC
Confidence 999999987653
No 118
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=4.4e-28 Score=214.80 Aligned_cols=251 Identities=10% Similarity=0.103 Sum_probs=172.4
Q ss_pred ecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeeccccc
Q 013578 133 INLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASAT 212 (440)
Q Consensus 133 ~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (440)
....|...|.+++|+|++++|++++.+ .+.+|+......... ....+....
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~la~g~~~----~~~iw~~~~~~~~~~-------------------------~~~~~~~~~ 64 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSCLILSTLK----SFEIYNVHPVAHIMS-------------------------QEMRHLSKV 64 (355)
T ss_dssp -----CCCCCEEEECTTSSEEEEECSS----EEEEEEETTEEEEEE-------------------------EECSCCCEE
T ss_pred ccccCCCceEEEEECCCCCEEEEEcCC----EEEEEecCCcceeee-------------------------eecCCeEEE
Confidence 335678999999999999999988765 245665433211000 000011122
Q ss_pred ccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEec-CCCceeeeee
Q 013578 213 YGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYS-KDGLVKAVTS 291 (440)
Q Consensus 213 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~ 291 (440)
.+.++++.++++++.|++|++||..+++.+..+.. ...+.++.++++. ++++ .++.|++||+... + .
T Consensus 65 ~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~-~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~--------~ 132 (355)
T 3vu4_A 65 RMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKV-DAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWK--------R 132 (355)
T ss_dssp EECTTSSEEEEECSSTTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCC--------B
T ss_pred EEcCCCCEEEEEECCccEEEEEECCCCcEEEEEEC-CCceEEEEEcCCE--EEEE-EcCEEEEEECCCCce--------e
Confidence 23455664667888899999999999999988874 5689999998764 4444 4789999998765 2 2
Q ss_pred eeeeeccccceEEEEEcCCCCEEEE--EeCCCcEEEEecCccccccCCCCcccc-cccc-ccCCCCCeeeeeeEEeCCCC
Q 013578 292 VMQLKGHKSAVTWLCFAPNSEQIIT--ASKDGTLRVWNINVRYHLDEDPKTLKV-LPIP-LLDSNGATLQYDRLSLSSDG 367 (440)
Q Consensus 292 ~~~~~~h~~~v~~~~~~p~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~v~~~~~s~~g 367 (440)
+..+.. +...+++++ .+++. |+.||.|++||++++............ ...+ .....+|...|.+++|+|+|
T Consensus 133 ~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g 207 (355)
T 3vu4_A 133 ITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS 207 (355)
T ss_dssp SSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS
T ss_pred eEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC
Confidence 333332 344566676 56665 578999999999875422111000000 0001 23345778889999999999
Q ss_pred CEEEEec-CCE-EEEEEcCCccchhhhhcc-ccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 368 KILAATH-GST-LQWLSVETGKVLDTAEKA-HEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 368 ~~l~~~~-~~~-i~i~d~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
++|++|+ |+. |++||+.+++.+..+..+ |.+.|++++|+|++ .+|++++.|++|++|++...
T Consensus 208 ~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~--------~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 208 DMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDG--------SKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp SEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTS--------CEEEEEETTCEEEEEESSCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCC--------CEEEEEECCCEEEEEEccCC
Confidence 9999876 887 999999999999888535 99999999999998 89999999999999999765
No 119
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=1.1e-28 Score=224.76 Aligned_cols=230 Identities=17% Similarity=0.275 Sum_probs=177.4
Q ss_pred ccccccccCcceeEEEEccCCC-EEEEeeCCCcEEEEecCCCCCcc--eeeEEecCCCCCCCceEEEccCCCeEEEEeec
Q 013578 83 DVNTLKGHGDSVTGLCFSSDGK-CLATACADGVIRVHKLDDASSKS--FKFLRINLPPGGPPTAVAFADNATSIVVATHN 159 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~dg~-~l~t~s~dg~v~vW~~~~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~ 159 (440)
++..+.+|...|.+++|+|++. +|++|+.||.|++|++....... .........|...|.+++|+|++.
T Consensus 173 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-------- 244 (430)
T 2xyi_A 173 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHE-------- 244 (430)
T ss_dssp CSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCT--------
T ss_pred CcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCC--------
Confidence 4567889999999999999998 99999999999999998743221 111334456778899999987432
Q ss_pred CCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC
Q 013578 160 LSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG 239 (440)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 239 (440)
.++++++.|+.|++||++++
T Consensus 245 ------------------------------------------------------------~~l~s~~~dg~i~i~d~~~~ 264 (430)
T 2xyi_A 245 ------------------------------------------------------------SLFGSVADDQKLMIWDTRNN 264 (430)
T ss_dssp ------------------------------------------------------------TEEEEEETTSEEEEEETTCS
T ss_pred ------------------------------------------------------------CEEEEEeCCCeEEEEECCCC
Confidence 17888999999999999987
Q ss_pred ---ceeeeeeCCCCcccEEEecCCCC-eEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCC-EE
Q 013578 240 ---KLLGNVDTNQLKNNMAAISPNGR-FLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSE-QI 314 (440)
Q Consensus 240 ---~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l 314 (440)
+.+..+..|...+++++|+|++. +|++|+.||.|++||++... ..+..+.+|...|.+++|+|++. +|
T Consensus 265 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-------~~~~~~~~h~~~v~~i~~sp~~~~~l 337 (430)
T 2xyi_A 265 NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-------LKLHSFESHKDEIFQVQWSPHNETIL 337 (430)
T ss_dssp CSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-------SCSEEEECCSSCEEEEEECSSCTTEE
T ss_pred CCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-------CCeEEeecCCCCEEEEEECCCCCCEE
Confidence 56777888999999999999987 68899999999999997643 25677888999999999999985 68
Q ss_pred EEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEec-CCEEEEEEcCCcc
Q 013578 315 ITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATH-GSTLQWLSVETGK 387 (440)
Q Consensus 315 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~-~~~i~i~d~~~~~ 387 (440)
++++.|+.|++||++.......................+|...|.+++|+|+++ +|++++ |+.|++|++....
T Consensus 338 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 338 ASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp EEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred EEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 999999999999998632211000000000112334456677899999999999 676654 8999999987543
No 120
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.2e-27 Score=215.74 Aligned_cols=309 Identities=13% Similarity=0.154 Sum_probs=212.7
Q ss_pred CCCCCCcccCcc----ccccccccCcceeEEEEccCCCEE-EEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEE
Q 013578 71 GDKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCL-ATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVA 145 (440)
Q Consensus 71 ~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l-~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~ 145 (440)
+..++.++.|+. .+..+.+|. .+.+++|+|+|++| ++++.|++|++||+.+++. .... .+...+.+++
T Consensus 8 ~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-----~~~~-~~~~~v~~~~ 80 (391)
T 1l0q_A 8 NSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-----IATV-PAGSSPQGVA 80 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-----EEEE-ECSSSEEEEE
T ss_pred cCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-----EEEE-ECCCCccceE
Confidence 344555666543 345566664 58999999999977 6777999999999987642 2222 2234899999
Q ss_pred EccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEe
Q 013578 146 FADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASC 225 (440)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 225 (440)
|+|+++++++++.+ ...+.+|+........ .+........+.++++++.+++++
T Consensus 81 ~spdg~~l~~~~~~--~~~v~v~d~~~~~~~~------------------------~~~~~~~~~~~~~s~dg~~l~~~~ 134 (391)
T 1l0q_A 81 VSPDGKQVYVTNMA--SSTLSVIDTTSNTVAG------------------------TVKTGKSPLGLALSPDGKKLYVTN 134 (391)
T ss_dssp ECTTSSEEEEEETT--TTEEEEEETTTTEEEE------------------------EEECSSSEEEEEECTTSSEEEEEE
T ss_pred ECCCCCEEEEEECC--CCEEEEEECCCCeEEE------------------------EEeCCCCcceEEECCCCCEEEEEe
Confidence 99999998877644 2467777655431110 011111223445688998666889
Q ss_pred eCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeE-EEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEE
Q 013578 226 SEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFL-AAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTW 304 (440)
Q Consensus 226 ~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~ 304 (440)
+.++.|++||+.+++.+..+..+. .+.+++|+|+++.| ++++.++.|++||++.+. ....+. +...+.+
T Consensus 135 ~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~--------~~~~~~-~~~~~~~ 204 (391)
T 1l0q_A 135 NGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS--------VIDTVK-VEAAPSG 204 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--------EEEEEE-CSSEEEE
T ss_pred CCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCe--------EEEEEe-cCCCccc
Confidence 999999999999999888887654 46899999999987 566788999999986543 333333 5668899
Q ss_pred EEEcCCCCEEEEEe---CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE-Ee-cCCEEE
Q 013578 305 LCFAPNSEQIITAS---KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA-AT-HGSTLQ 379 (440)
Q Consensus 305 ~~~~p~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~-~~~~i~ 379 (440)
++|+|++++|++++ .++.|++||++++..+. .+. .+ ..+.+++|+|+|++|+ ++ .++.|+
T Consensus 205 ~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~-------~~~-------~~-~~~~~~~~s~dg~~l~~s~~~d~~v~ 269 (391)
T 1l0q_A 205 IAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA-------RIP-------VG-PDPAGIAVTPDGKKVYVALSFXNTVS 269 (391)
T ss_dssp EEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE-------EEE-------CC-SSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred eEECCCCCEEEEEecCcCCCcEEEEECCCCeEEE-------EEe-------cC-CCccEEEEccCCCEEEEEcCCCCEEE
Confidence 99999999998888 68999999998664321 111 11 1256899999999774 44 489999
Q ss_pred EEEcCCccchhhhhccccCCeE---EEEecCCCCCCC---------C-----CcceEEEEeeCCCeEEEEeCCCCC
Q 013578 380 WLSVETGKVLDTAEKAHEGEIT---CMAWAPKTIPMG---------N-----QQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 380 i~d~~~~~~~~~~~~~h~~~v~---~v~~~~~~~~~~---------~-----~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
+||+.+++.+..+. .|..+.. .+.+.|++.... . .+...+...+.|..+++|++..+.
T Consensus 270 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~ 344 (391)
T 1l0q_A 270 VIDTATNTITATMA-VGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGS 344 (391)
T ss_dssp EEETTTTEEEEEEE-CSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSC
T ss_pred EEECCCCcEEEEEE-CCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCc
Confidence 99999998877763 4433221 133333221100 0 011346677789999999997765
No 121
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=1.2e-28 Score=221.59 Aligned_cols=212 Identities=13% Similarity=0.157 Sum_probs=142.7
Q ss_pred CeEEEEeeCCceEEEEeCCCCcee-----eeeeCCCCcccEEEecC--------CCCeEEEEecCCCEEEEEeEecCCCc
Q 013578 219 STIIASCSEGTDISIWHGKTGKLL-----GNVDTNQLKNNMAAISP--------NGRFLAAAAFTADVKVWEIVYSKDGL 285 (440)
Q Consensus 219 ~~~l~s~~~d~~i~vwd~~~~~~~-----~~~~~~~~~v~~~~~s~--------~~~~l~~~~~dg~i~i~d~~~~~~~~ 285 (440)
..++++++.|++|++||..+++.. ..+.+|...|.+++|+| ++++|++|+.|++|+|||+....
T Consensus 101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~--- 177 (393)
T 4gq1_A 101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG--- 177 (393)
T ss_dssp EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE---
T ss_pred CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc---
Confidence 338999999999999999887643 34678999999999998 88999999999999999997654
Q ss_pred eeeeeeeeeeeccccceEEEEEcCCCC-EEEEEeCCCcEEEEecCccccccCCCCcccc-----------ccccccCCCC
Q 013578 286 VKAVTSVMQLKGHKSAVTWLCFAPNSE-QIITASKDGTLRVWNINVRYHLDEDPKTLKV-----------LPIPLLDSNG 353 (440)
Q Consensus 286 ~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------~~~~~~~~~~ 353 (440)
....+.+|..+|.+++|+|++. +|++++.|++|++||++++............ .........+
T Consensus 178 -----~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 252 (393)
T 4gq1_A 178 -----PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSG 252 (393)
T ss_dssp -----EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------C
T ss_pred -----eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccc
Confidence 5666778999999999999875 7999999999999999877554321111000 0011122345
Q ss_pred CeeeeeeEEeC-CCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCC------------CCCcceE
Q 013578 354 ATLQYDRLSLS-SDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPM------------GNQQVSV 419 (440)
Q Consensus 354 ~~~~v~~~~~s-~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~------------~~~~~~~ 419 (440)
+...+.++.|+ ++++.++++. |+.+++||+.+++....+ ..|...+..+.+.|+.... +.....+
T Consensus 253 ~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (393)
T 4gq1_A 253 IASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEI-SDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYF 331 (393)
T ss_dssp CSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTEE
T ss_pred ccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceE-eeecCccccEEEccccccccccCcceeEEEccCCCCEE
Confidence 66678888886 8999988876 899999999998877776 3676666666666542100 0012257
Q ss_pred EEEeeCCCeEEEEeCCCCCC
Q 013578 420 LATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 420 l~t~~~Dg~i~vw~~~~~~~ 439 (440)
+++|+.||+|++||+.++++
T Consensus 332 ~~sgs~Dg~V~lwd~~~~~~ 351 (393)
T 4gq1_A 332 ATAHSQHGLIQLINTYEKDS 351 (393)
T ss_dssp EEEETTTTEEEEEETTCTTC
T ss_pred EEEECCCCEEEEEECCCCcE
Confidence 78889999999999998764
No 122
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.4e-28 Score=220.51 Aligned_cols=200 Identities=16% Similarity=0.110 Sum_probs=163.3
Q ss_pred ccccccCCCCCeEEEEeeCCceEEEEeCC--CCceeeeee--CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCC
Q 013578 209 ASATYGTADGSTIIASCSEGTDISIWHGK--TGKLLGNVD--TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDG 284 (440)
Q Consensus 209 ~~~~~~~~~~~~~l~s~~~d~~i~vwd~~--~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~ 284 (440)
..++.++|+++.++++++.|+.|++||+. +++.+..+. .+...+.+++|+|++++|++|+.+|.|++|++......
T Consensus 105 v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~ 184 (450)
T 2vdu_B 105 IRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEE 184 (450)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCS
T ss_pred eEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccc
Confidence 34456789999556999999999999999 888887776 45678999999999999999999999999998655411
Q ss_pred ceeeeeeeeeeeccccceEEEEEcCC---CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeE
Q 013578 285 LVKAVTSVMQLKGHKSAVTWLCFAPN---SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRL 361 (440)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~~p~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 361 (440)
. .....+.+|...|.+++|+|+ +++|++++.|+.|++||++++..+.. ...+|...|.++
T Consensus 185 ~----~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-------------~~~~h~~~v~~~ 247 (450)
T 2vdu_B 185 K----FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK-------------WLFGHKHFVSSI 247 (450)
T ss_dssp S----CCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE-------------ECCCCSSCEEEE
T ss_pred c----ccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee-------------eecCCCCceEEE
Confidence 0 023367789999999999999 99999999999999999986543211 123566779999
Q ss_pred EeCCCCCEEEEec-CCEEEEEEcCCccchhhhhc------------------------cccCCeEEEEecCCCCCCCCCc
Q 013578 362 SLSSDGKILAATH-GSTLQWLSVETGKVLDTAEK------------------------AHEGEITCMAWAPKTIPMGNQQ 416 (440)
Q Consensus 362 ~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~------------------------~h~~~v~~v~~~~~~~~~~~~~ 416 (440)
+|+ ++++|++++ |+.|++||+.+++.+..+.. .+...|.+++|+|++
T Consensus 248 ~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~------- 319 (450)
T 2vdu_B 248 CCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL------- 319 (450)
T ss_dssp EEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS-------
T ss_pred EEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC-------
Confidence 999 999999876 89999999999987666531 223579999999998
Q ss_pred ceEEEEee-CCCeEEEEeC
Q 013578 417 VSVLATSS-VDKKVKLWLA 434 (440)
Q Consensus 417 ~~~l~t~~-~Dg~i~vw~~ 434 (440)
++|++++ .|+.|++|++
T Consensus 320 -~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 320 -PFVAFFVEATKCIIILEM 337 (450)
T ss_dssp -SEEEEEETTCSEEEEEEE
T ss_pred -CEEEEEECCCCeEEEEEe
Confidence 7898888 8999999999
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.6e-27 Score=210.66 Aligned_cols=231 Identities=9% Similarity=0.002 Sum_probs=168.8
Q ss_pred EccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEe
Q 013578 146 FADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASC 225 (440)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 225 (440)
+.+++..+++++.| ..+.+|+......... +. ......+.+.|+ ++++
T Consensus 44 ~~~d~~~l~sg~~D---g~v~iwd~~~~~~~~~------------------------~~-~~~v~~~~~~~~----~~s~ 91 (343)
T 3lrv_A 44 MYYDKWVCMCRCED---GALHFTQLKDSKTITT------------------------IT-TPNPRTGGEHPA----IISR 91 (343)
T ss_dssp SSEEEEEEEEEEET---TEEEEEEESSSSCEEE------------------------EE-EECCCTTCCCCS----EEEE
T ss_pred hcCCCCEEEEECCC---CcEEEEECCCCcEEEE------------------------Ee-cCCceeeeeCCc----eEEe
Confidence 44678889999888 5677776544311100 00 112223333444 8999
Q ss_pred eCCceEEEEeCC---------CCceeeeee-CCCCcccEEEecC--CCCeEEEEecCCCEEEEEeEecCCCceeeeeeee
Q 013578 226 SEGTDISIWHGK---------TGKLLGNVD-TNQLKNNMAAISP--NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM 293 (440)
Q Consensus 226 ~~d~~i~vwd~~---------~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 293 (440)
+.|++|++|+.. +++.+..+. .|...|.+++|+| ++++|++++.||.|++||++.+. ...
T Consensus 92 s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--------~~~ 163 (343)
T 3lrv_A 92 GPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS--------QYI 163 (343)
T ss_dssp CSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC--------EEE
T ss_pred cCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc--------EEE
Confidence 999999999655 555454444 5567899999999 99999999999999999997654 333
Q ss_pred ee-eccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCC-CCeeeeeeEEeCCCCCEEE
Q 013578 294 QL-KGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSN-GATLQYDRLSLSSDGKILA 371 (440)
Q Consensus 294 ~~-~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~ 371 (440)
.. ..|...|.+++|+|++.+|++|+.||.|++||++++.... . ... +|...|.+++|+|+|.+|+
T Consensus 164 ~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~------~-------~~~~~h~~~v~~l~fs~~g~~l~ 230 (343)
T 3lrv_A 164 VHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQAS------S-------RFPVDEEAKIKEVKFADNGYWMV 230 (343)
T ss_dssp EECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCC------E-------ECCCCTTSCEEEEEECTTSSEEE
T ss_pred EEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCc------c-------EEeccCCCCEEEEEEeCCCCEEE
Confidence 33 3355689999999999999999999999999999764320 0 112 2567799999999999999
Q ss_pred EecCCEEEEEEcCCccchhhhhc--cccCCeE--EEEecCCCCCCCCCcceEEEEeeC-CCeEEEEeCCCC
Q 013578 372 ATHGSTLQWLSVETGKVLDTAEK--AHEGEIT--CMAWAPKTIPMGNQQVSVLATSSV-DKKVKLWLAPSL 437 (440)
Q Consensus 372 ~~~~~~i~i~d~~~~~~~~~~~~--~h~~~v~--~v~~~~~~~~~~~~~~~~l~t~~~-Dg~i~vw~~~~~ 437 (440)
+++++.|++||+++++.+..+.. .|...+. +++|+|++ .+|++++. |+.|+||++...
T Consensus 231 s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 231 VECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSG--------KNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp EEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTS--------SEEEEEETTTTEEEEEEECTT
T ss_pred EEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCC--------CEEEEecCCCCcEEEEEEccc
Confidence 98888999999999987665531 1334444 69999998 89999998 999999998654
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2.7e-27 Score=200.08 Aligned_cols=215 Identities=14% Similarity=0.067 Sum_probs=149.5
Q ss_pred cceeEEEEccC----CCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEe
Q 013578 92 DSVTGLCFSSD----GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYM 167 (440)
Q Consensus 92 ~~V~~l~~s~d----g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~ 167 (440)
..|+.|+|+|| ++++++++.+ +++|++.++. .......+|...|..++|+|+|+.+...........+
T Consensus 112 ~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~----lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~-- 183 (356)
T 2w18_A 112 REIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRR----LVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETI-- 183 (356)
T ss_dssp EEEEEECC------CCEEEEEEEEE--EEEEEETTTE----EEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCE--
T ss_pred cceEEEEECCCccccccEEEeCCCe--EEEEecCCCc----EEEecccCCCCcEEEEEECCCCceeeeeccCCCceee--
Confidence 36777888888 8899998855 8899996542 1222246688999999999999877653322111100
Q ss_pred eccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCC---CCCeEEEEeeCCceEEEEeCCCCceeee
Q 013578 168 YGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA---DGSTIIASCSEGTDISIWHGKTGKLLGN 244 (440)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 244 (440)
..+++ ++. +|++++.|++|++||+++++++++
T Consensus 184 --------------------------------------------l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TGk~l~t 218 (356)
T 2w18_A 184 --------------------------------------------LTFAEVQGMQE-ALLGTTIMNNIVIWNLKTGQLLKK 218 (356)
T ss_dssp --------------------------------------------EEEEEEETSTT-EEEEEETTSEEEEEETTTCCEEEE
T ss_pred --------------------------------------------EEeeccCCCCc-eEEEecCCCcEEEEECCCCcEEEE
Confidence 01122 334 999999999999999999999999
Q ss_pred eeCCC---CcccEEEecCCCCeE------------EEEecCCCEEEEEeEecCCCceeeeeeeeee-----eccccceEE
Q 013578 245 VDTNQ---LKNNMAAISPNGRFL------------AAAAFTADVKVWEIVYSKDGLVKAVTSVMQL-----KGHKSAVTW 304 (440)
Q Consensus 245 ~~~~~---~~v~~~~~s~~~~~l------------~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-----~~h~~~v~~ 304 (440)
+..|. ..+.+++|+|+|+++ ++|+.|++|++||..+++ .+..+ .+|...+.+
T Consensus 219 L~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk--------~l~v~~~~~p~Gh~~~~ls 290 (356)
T 2w18_A 219 MHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL--------SVGVMLYCLPPGQAGRFLE 290 (356)
T ss_dssp EECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE--------EEEEEEECCCTTCCCCEEE
T ss_pred EcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE--------EEEEEEeeccCCCcceeEc
Confidence 97643 356677999999887 567889999999986543 22222 367666555
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeee-eeEEeCCCCCEEEEec-CCEEEEEE
Q 013578 305 LCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQY-DRLSLSSDGKILAATH-GSTLQWLS 382 (440)
Q Consensus 305 ~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~g~~l~~~~-~~~i~i~d 382 (440)
..+ ++.++++++.|++|+|||+++++++.. ..+|...+ ..++|+|||++|++|+ |++|++||
T Consensus 291 g~~--sg~~lASgS~DgTIkIWDl~tGk~l~t--------------L~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 291 GDV--KDHCAAAILTSGTIAIWDLLLGQCTAL--------------LPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp EEE--ETTEEEEEETTSCEEEEETTTCSEEEE--------------ECCC--CCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred ccc--CCCEEEEEcCCCcEEEEECCCCcEEEE--------------ecCCCCCeEEEEEECCCCCEEEEEECCCcEEEec
Confidence 554 478899999999999999998765421 12333333 4589999999999987 99999998
Q ss_pred c
Q 013578 383 V 383 (440)
Q Consensus 383 ~ 383 (440)
.
T Consensus 355 ~ 355 (356)
T 2w18_A 355 Y 355 (356)
T ss_dssp E
T ss_pred C
Confidence 5
No 125
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=2.1e-27 Score=212.16 Aligned_cols=200 Identities=17% Similarity=0.222 Sum_probs=149.2
Q ss_pred EEEEeeCCceEEEEeCCC-Ccee-eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc
Q 013578 221 IIASCSEGTDISIWHGKT-GKLL-GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH 298 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~-~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h 298 (440)
+|++++.|+.|++||+.+ +..+ ..+..|...|.+++|+|++++|++++.||.|++||+.... ...+.+|
T Consensus 56 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~---------~~~~~~~ 126 (368)
T 3mmy_A 56 FLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ---------AIQIAQH 126 (368)
T ss_dssp EEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---------EEEEEEC
T ss_pred EEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCC---------ceeeccc
Confidence 788899999999999997 5554 7788899999999999999999999999999999986543 3335679
Q ss_pred ccceEEEEE--cCCCCEEEEEeCCCcEEEEecCccccccCCCCccccc---------------------cc------ccc
Q 013578 299 KSAVTWLCF--APNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVL---------------------PI------PLL 349 (440)
Q Consensus 299 ~~~v~~~~~--~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~---------------------~~------~~~ 349 (440)
...|.+++| +|++.+|++++.||.|++||++++..+.......... .. ...
T Consensus 127 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 206 (368)
T 3mmy_A 127 DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRR 206 (368)
T ss_dssp SSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEE
T ss_pred cCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhh
Confidence 999999999 8999999999999999999998765432211100000 00 000
Q ss_pred CCCCCeeeeeeEEeCCCCCE----EEE-ecCCEEEEEEcCCcc---chhhhhccccC------------CeEEEEecCCC
Q 013578 350 DSNGATLQYDRLSLSSDGKI----LAA-THGSTLQWLSVETGK---VLDTAEKAHEG------------EITCMAWAPKT 409 (440)
Q Consensus 350 ~~~~~~~~v~~~~~s~~g~~----l~~-~~~~~i~i~d~~~~~---~~~~~~~~h~~------------~v~~v~~~~~~ 409 (440)
..........++++.++... +++ +.++.|++|++.... .+..+ .+|.. .|++++|+|++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 285 (368)
T 3mmy_A 207 IESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTF-KCHRSNGTNTSAPQDIYAVNGIAFHPVH 285 (368)
T ss_dssp CCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEE-ECSEEC----CCCEEECCEEEEEECTTT
T ss_pred ccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceee-eeeecccccccccccccceEEEEEecCC
Confidence 00111122344555444432 555 459999999999873 34444 45655 79999999998
Q ss_pred CCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 410 IPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 410 ~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
.+|++|+.||.|++||+.+++
T Consensus 286 --------~~l~s~~~dg~i~iwd~~~~~ 306 (368)
T 3mmy_A 286 --------GTLATVGSDGRFSFWDKDART 306 (368)
T ss_dssp --------CCEEEEETTSCEEEEETTTTE
T ss_pred --------CEEEEEccCCeEEEEECCCCc
Confidence 899999999999999998764
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=1.9e-25 Score=207.89 Aligned_cols=322 Identities=11% Similarity=0.035 Sum_probs=209.3
Q ss_pred CCCCCcccCcc----ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEec--CCCCCcceeeEEecCCCCCCCceEE
Q 013578 72 DKDQNKRHHPL----DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKL--DDASSKSFKFLRINLPPGGPPTAVA 145 (440)
Q Consensus 72 ~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~--~~~~~~~~~~~~~~~~~~~~v~~v~ 145 (440)
..+..+..++. .+.++..+.. +.+++|+|||++|++++.|++|++||+ .+.. .... ..++..+..++
T Consensus 156 ~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-----~~~~-i~~g~~p~~va 228 (543)
T 1nir_A 156 RDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-----KVAE-IKIGIEARSVE 228 (543)
T ss_dssp GGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-----EEEE-EECCSEEEEEE
T ss_pred cCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-----EEEE-EecCCCcceEE
Confidence 34455555543 3455663323 899999999999999999999999999 4432 1222 12456689999
Q ss_pred Ecc----CCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeE
Q 013578 146 FAD----NATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTI 221 (440)
Q Consensus 146 ~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (440)
|+| ++++++++... ...+.+|+............. ....+....+.. .....+.+++++..+
T Consensus 229 ~sp~~~~dg~~l~v~~~~--~~~v~v~D~~t~~~~~~i~~~------g~~~~~~~~~~~------~~v~~i~~s~~~~~~ 294 (543)
T 1nir_A 229 SSKFKGYEDRYTIAGAYW--PPQFAIMDGETLEPKQIVSTR------GMTVDTQTYHPE------PRVAAIIASHEHPEF 294 (543)
T ss_dssp ECCSTTCTTTEEEEEEEE--SSEEEEEETTTCCEEEEEECC------EECSSSCCEESC------CCEEEEEECSSSSEE
T ss_pred eCCCcCCCCCEEEEEEcc--CCeEEEEeccccccceeeccc------CcccCccccccC------CceEEEEECCCCCEE
Confidence 999 99999998764 245566654432111000000 000000000000 011234457888878
Q ss_pred EEEeeCCceEEEEeCCCCceee--eeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeeeec-
Q 013578 222 IASCSEGTDISIWHGKTGKLLG--NVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQLKG- 297 (440)
Q Consensus 222 l~s~~~d~~i~vwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~- 297 (440)
+++...++.|.+||..+.+.+. .+. +...+..+.|+|+|++|++++ .+++|.+||+.+++ .+..+..
T Consensus 295 ~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~--------l~~~i~~g 365 (543)
T 1nir_A 295 IVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRR--------LSALVDVG 365 (543)
T ss_dssp EEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTE--------EEEEEECS
T ss_pred EEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCe--------EEEeeccC
Confidence 8999999999999998876543 443 345578899999999877665 58899999986554 3333432
Q ss_pred ---cccceEEEEEcCC-CCEEEEEe-CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE
Q 013578 298 ---HKSAVTWLCFAPN-SEQIITAS-KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA 372 (440)
Q Consensus 298 ---h~~~v~~~~~~p~-~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 372 (440)
|.+....+ ++|+ +..++++. .|++|.+||+.+.............+ ..+...+..++++|+|++|++
T Consensus 366 ~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l-------~~~g~~~~~v~~~pdg~~l~v 437 (543)
T 1nir_A 366 KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL-------QGQGGGSLFIKTHPKSSHLYV 437 (543)
T ss_dssp SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE-------ECSCSCCCCEECCTTCCEEEE
T ss_pred CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE-------EcCCCCceEEEcCCCCCcEEE
Confidence 55444444 5777 56667765 58999999998632111101111111 122233567999999999999
Q ss_pred ec--------CCEEEEEEcCCccch-hhhh-------ccccCCeEEEEecCCCCCCCCCcceEEEEe-----eCCCeEEE
Q 013578 373 TH--------GSTLQWLSVETGKVL-DTAE-------KAHEGEITCMAWAPKTIPMGNQQVSVLATS-----SVDKKVKL 431 (440)
Q Consensus 373 ~~--------~~~i~i~d~~~~~~~-~~~~-------~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~-----~~Dg~i~v 431 (440)
+. ++.|.+||+.+++.. ..+. ..+...+..++|+|+| +.|+.+ +.|+.|.|
T Consensus 438 ~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g--------~~~~~s~~~~~~~~~~i~v 509 (543)
T 1nir_A 438 DTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG--------DEVWFSVWNGKNDSSALVV 509 (543)
T ss_dssp CCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSS--------SEEEEEEECCTTSCCEEEE
T ss_pred ecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCC--------CEEEEEeecCCCCCCeEEE
Confidence 75 579999999999876 3321 2456789999999998 566644 24899999
Q ss_pred EeCCCCCC
Q 013578 432 WLAPSLES 439 (440)
Q Consensus 432 w~~~~~~~ 439 (440)
||..++++
T Consensus 510 ~D~~t~~~ 517 (543)
T 1nir_A 510 VDDKTLKL 517 (543)
T ss_dssp EETTTTEE
T ss_pred EECCCceE
Confidence 99998764
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=1.4e-25 Score=202.75 Aligned_cols=284 Identities=18% Similarity=0.100 Sum_probs=198.1
Q ss_pred cCcceeEEEEccCCC-EEEEee----CCC----cEEEEec--CCCCCcceeeEEecCCCCCCCceEEEcc----------
Q 013578 90 HGDSVTGLCFSSDGK-CLATAC----ADG----VIRVHKL--DDASSKSFKFLRINLPPGGPPTAVAFAD---------- 148 (440)
Q Consensus 90 H~~~V~~l~~s~dg~-~l~t~s----~dg----~v~vW~~--~~~~~~~~~~~~~~~~~~~~v~~v~~~~---------- 148 (440)
+...|...+|++.|. ++++|+ .|| +++|||+ .+++.. .......|...+..+++.+
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~g 137 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVL---AQNSYKVNKQWLRYAGHTASDEVFEKLTG 137 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEE---EEEEEEECGGGHHHHHHHHHHHHHHHHHS
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEE---eeeEEEcChhHHHHHHHHHHHHHHHHHcC
Confidence 445788889988875 666876 567 8999999 766421 1122334555666666664
Q ss_pred ----CCCeEEEEeecCCc---ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeE
Q 013578 149 ----NATSIVVATHNLSG---CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTI 221 (440)
Q Consensus 149 ----~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (440)
.+..++.++.+... ..+++|+...... ..............++|+|+ .
T Consensus 138 ~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~------------------------~~l~~~~~~v~~~~~Spdg~-~ 192 (415)
T 2hqs_A 138 IKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ------------------------FVVHRSPQPLMSPAWSPDGS-K 192 (415)
T ss_dssp SCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC------------------------EEEEEESSCEEEEEECTTSS-E
T ss_pred CCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC------------------------EEEeCCCCcceeeEEcCCCC-E
Confidence 26677777665333 5777777543210 00001111223345689999 7
Q ss_pred EEEeeCCc---eEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEE-EEecCCC--EEEEEeEecCCCceeeeeeeeee
Q 013578 222 IASCSEGT---DISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLA-AAAFTAD--VKVWEIVYSKDGLVKAVTSVMQL 295 (440)
Q Consensus 222 l~s~~~d~---~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~ 295 (440)
+++++.++ .|++||+.+++.. .+..+...+.+++|+|+|+.|+ +++.++. |++||+..+. ...+
T Consensus 193 la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~---------~~~l 262 (415)
T 2hqs_A 193 LAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---------IRQV 262 (415)
T ss_dssp EEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC---------EEEC
T ss_pred EEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC---------EEeC
Confidence 77777664 8999999988775 4556677899999999999888 6666665 8888875543 3456
Q ss_pred eccccceEEEEEcCCCCEEEEEeC-CC--cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE
Q 013578 296 KGHKSAVTWLCFAPNSEQIITASK-DG--TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA 372 (440)
Q Consensus 296 ~~h~~~v~~~~~~p~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 372 (440)
..|...+.+++|+|+|++|++++. ++ .|.+||+.++... . ...+...+..++|+|+|++|+.
T Consensus 263 ~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~--------~-------l~~~~~~~~~~~~spdG~~l~~ 327 (415)
T 2hqs_A 263 TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ--------R-------ITWEGSQNQDADVSSDGKFMVM 327 (415)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE--------E-------CCCSSSEEEEEEECTTSSEEEE
T ss_pred cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE--------E-------EecCCCcccCeEECCCCCEEEE
Confidence 678889999999999999988876 45 5777788754311 0 0112235778999999999987
Q ss_pred ec-C---CEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCC---eEEEEeCCCC
Q 013578 373 TH-G---STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDK---KVKLWLAPSL 437 (440)
Q Consensus 373 ~~-~---~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg---~i~vw~~~~~ 437 (440)
+. + ..|++||+.+++... + ..|. .+.+++|+|++ ++|++++.|+ .|++|++...
T Consensus 328 ~~~~~g~~~i~~~d~~~~~~~~-l-~~~~-~~~~~~~spdg--------~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 328 VSSNGGQQHIAKQDLATGGVQV-L-SSTF-LDETPSLAPNG--------TMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp EEECSSCEEEEEEETTTCCEEE-C-CCSS-SCEEEEECTTS--------SEEEEEEEETTEEEEEEEETTSC
T ss_pred EECcCCceEEEEEECCCCCEEE-e-cCCC-CcCCeEEcCCC--------CEEEEEEcCCCccEEEEEECCCC
Confidence 64 2 589999999988743 3 2344 89999999998 8888888877 7999998754
No 128
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.94 E-value=1.4e-25 Score=205.08 Aligned_cols=291 Identities=12% Similarity=0.108 Sum_probs=196.8
Q ss_pred cCcceeEEE---EccCCCEEEEe--------------eCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCe
Q 013578 90 HGDSVTGLC---FSSDGKCLATA--------------CADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATS 152 (440)
Q Consensus 90 H~~~V~~l~---~s~dg~~l~t~--------------s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~ 152 (440)
+...+..++ |+|+++.++.. +.|+.++||.++..... ....... .....+.+++|+|++ .
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~-~~~~~~~~~~~s~~~-~ 135 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGIT-HRFISRF-KTGFQPKSVRFIDNT-R 135 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCS-EEEEEEE-ECSSCBCCCEESSSS-E
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCc-ceEEEEE-cCCCCceEEEEeCCC-e
Confidence 345677777 88877665533 33444466666542211 1122222 223556799999944 4
Q ss_pred EEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEE
Q 013578 153 IVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDIS 232 (440)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 232 (440)
+++++.. ...+.+|+............ .....+...+. .+.+++++. ++++++.|+.|+
T Consensus 136 ~~~~~~~--~~~i~~~d~~~g~~~~~~~~-----------~~~~~~~~~v~-------~~~~~~~~~-~~~s~~~d~~v~ 194 (433)
T 3bws_A 136 LAIPLLE--DEGMDVLDINSGQTVRLSPP-----------EKYKKKLGFVE-------TISIPEHNE-LWVSQMQANAVH 194 (433)
T ss_dssp EEEEBTT--SSSEEEEETTTCCEEEECCC-----------HHHHTTCCEEE-------EEEEGGGTE-EEEEEGGGTEEE
T ss_pred EEEEeCC--CCeEEEEECCCCeEeeecCc-----------ccccccCCcee-------EEEEcCCCE-EEEEECCCCEEE
Confidence 4444433 24577776554321100000 00011111111 122345555 899999999999
Q ss_pred EEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCC
Q 013578 233 IWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS 311 (440)
Q Consensus 233 vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 311 (440)
+||+.+++.+..+..+...+.+++|+|+++.+++++ .|+.|++||++.++ .+..+.. ...+.+++|+|++
T Consensus 195 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~--------~~~~~~~-~~~~~~~~~~~~g 265 (433)
T 3bws_A 195 VFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL--------EIRKTDK-IGLPRGLLLSKDG 265 (433)
T ss_dssp EEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE--------EEEECCC-CSEEEEEEECTTS
T ss_pred EEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc--------EEEEecC-CCCceEEEEcCCC
Confidence 999999999999988888999999999999886555 79999999986543 3444443 3458999999999
Q ss_pred CEEEEEe--------CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE-Ee-cCCEEEEE
Q 013578 312 EQIITAS--------KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA-AT-HGSTLQWL 381 (440)
Q Consensus 312 ~~l~s~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~-~~~~i~i~ 381 (440)
++|++++ .|+.|++||++++..... . .+...+..++|+|+++.++ ++ .++.|++|
T Consensus 266 ~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~-------~--------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~ 330 (433)
T 3bws_A 266 KELYIAQFSASNQESGGGRLGIYSMDKEKLIDT-------I--------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVY 330 (433)
T ss_dssp SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE-------E--------EEEECEEEEEECSSTTEEEEEETTTTEEEEE
T ss_pred CEEEEEECCCCccccCCCeEEEEECCCCcEEee-------c--------cCCCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 9999888 488999999986543211 0 1233567899999998554 43 48999999
Q ss_pred EcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeC---------------CCeEEEEeCCCCC
Q 013578 382 SVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSV---------------DKKVKLWLAPSLE 438 (440)
Q Consensus 382 d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~---------------Dg~i~vw~~~~~~ 438 (440)
|+.+++.+..+. +...+.+++|+|++ ++|++++. ||.|++||+.+++
T Consensus 331 d~~~~~~~~~~~--~~~~~~~~~~s~dg--------~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 331 DLKEKKVQKSIP--VFDKPNTIALSPDG--------KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp ETTTTEEEEEEE--CSSSEEEEEECTTS--------SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred ECCCCcEEEEec--CCCCCCeEEEcCCC--------CEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 999998887763 77889999999998 77777776 5799999998764
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=2.4e-25 Score=201.16 Aligned_cols=276 Identities=13% Similarity=0.103 Sum_probs=195.0
Q ss_pred CcccCcc--c----c--ccccccCcceeEEEEcc--------------CCCEEEEeeCC------CcEEEEecCCCCCcc
Q 013578 76 NKRHHPL--D----V--NTLKGHGDSVTGLCFSS--------------DGKCLATACAD------GVIRVHKLDDASSKS 127 (440)
Q Consensus 76 ~~~~~~~--~----~--~~l~~H~~~V~~l~~s~--------------dg~~l~t~s~d------g~v~vW~~~~~~~~~ 127 (440)
..++|+. . + ..+.+|...+..+++++ .+..++.++.+ +.|++||++....
T Consensus 94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~-- 171 (415)
T 2hqs_A 94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ-- 171 (415)
T ss_dssp EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC--
T ss_pred EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC--
Confidence 5566655 2 2 45788999999888875 15677776654 7999999975432
Q ss_pred eeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEee
Q 013578 128 FKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLF 207 (440)
Q Consensus 128 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (440)
.....|...+.+++|+|+++.+++++.+.....+++|+........ . ..+. .
T Consensus 172 ----~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~--------------l---~~~~-------~ 223 (415)
T 2hqs_A 172 ----FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------V---ASFP-------R 223 (415)
T ss_dssp ----EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE--------------E---ECCS-------S
T ss_pred ----EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE--------------e---ecCC-------C
Confidence 2223456789999999999999999987656688888765431100 0 0000 0
Q ss_pred cccccccCCCCCeEEEEeeCCce--EEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec-CC--CEEEEEeEecC
Q 013578 208 GASATYGTADGSTIIASCSEGTD--ISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF-TA--DVKVWEIVYSK 282 (440)
Q Consensus 208 ~~~~~~~~~~~~~~l~s~~~d~~--i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~i~d~~~~~ 282 (440)
......++|+|+.++++++.++. |++||+.+++. ..+..+...+.+++|+|+|++|++++. ++ .|++||+..+.
T Consensus 224 ~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~ 302 (415)
T 2hqs_A 224 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA 302 (415)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC
Confidence 12234568999966657776654 99999998876 556667778899999999999998886 45 45555654332
Q ss_pred CCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCC---CcEEEEecCccccccCCCCccccccccccCCCCCeeeee
Q 013578 283 DGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKD---GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYD 359 (440)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 359 (440)
...+..+...+.+++|+|+|++|++++.+ ..|++||+.++.... + ..+. .+.
T Consensus 303 ---------~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~--------l-------~~~~-~~~ 357 (415)
T 2hqs_A 303 ---------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV--------L-------SSTF-LDE 357 (415)
T ss_dssp ---------CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE--------C-------CCSS-SCE
T ss_pred ---------EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE--------e-------cCCC-CcC
Confidence 23344566788999999999999988764 589999998653310 0 1111 477
Q ss_pred eEEeCCCCCEEEEec-CC---EEEEEEcCCccchhhhhccccCCeEEEEecCCC
Q 013578 360 RLSLSSDGKILAATH-GS---TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKT 409 (440)
Q Consensus 360 ~~~~s~~g~~l~~~~-~~---~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~ 409 (440)
.++|+|+|++|+.++ ++ .|++||+.. +....+ ..|.+.|.+++|+|..
T Consensus 358 ~~~~spdg~~l~~~s~~~~~~~l~~~d~~g-~~~~~l-~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 358 TPSLAPNGTMVIYSSSQGMGSVLNLVSTDG-RFKARL-PATDGQVKFPAWSPYL 409 (415)
T ss_dssp EEEECTTSSEEEEEEEETTEEEEEEEETTS-CCEEEC-CCSSSEEEEEEECCCC
T ss_pred CeEEcCCCCEEEEEEcCCCccEEEEEECCC-CcEEEe-eCCCCCCcCCcccccc
Confidence 899999999888754 43 799999874 445555 4799999999999974
No 130
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=9.1e-23 Score=179.34 Aligned_cols=284 Identities=12% Similarity=0.072 Sum_probs=182.2
Q ss_pred EEEccCCC-EEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccc
Q 013578 97 LCFSSDGK-CLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAIS 175 (440)
Q Consensus 97 l~~s~dg~-~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 175 (440)
..|.++++ .+++++.++.|++||+.+++.. .....+...+ .++|+|+++++++++... ..+++|+......
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~-----~~~~~~~~~~-~~~~s~dg~~l~~~~~~~--~~i~~~d~~~~~~ 74 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEIL-----NQITLGYDFV-DTAITSDCSNVVVTSDFC--QTLVQIETQLEPP 74 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEE-----EEEECCCCEE-EEEECSSSCEEEEEESTT--CEEEEEECSSSSC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCccccee-----eeEEccCCcc-eEEEcCCCCEEEEEeCCC--CeEEEEECCCCce
Confidence 34556555 4778889999999999876532 1111233445 999999999888877642 3666666543310
Q ss_pred cccccccCCCCCCceeecccccccceeEEEeecccc-cccCCCCCeEEEEeeCC-c--eEEEEeCCCCceeeeeeCCCCc
Q 013578 176 TNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASA-TYGTADGSTIIASCSEG-T--DISIWHGKTGKLLGNVDTNQLK 251 (440)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~s~~~d-~--~i~vwd~~~~~~~~~~~~~~~~ 251 (440)
. .........+.. +.++|+|+ +++++..+ + .|.+||+.+++.+..+..+. .
T Consensus 75 ~-----------------------~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~ 129 (331)
T 3u4y_A 75 K-----------------------VVAIQEGQSSMADVDITPDDQ-FAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-D 129 (331)
T ss_dssp E-----------------------EEEEEECSSCCCCEEECTTSS-EEEECCCSSSSCEEEEEETTTTEEEEEEECCT-T
T ss_pred e-----------------------EEecccCCCCccceEECCCCC-EEEEecCCCCcccEEEEECCCCCeEEEEECCC-C
Confidence 0 111222223334 56689998 55555555 3 89999999998888776544 4
Q ss_pred ccEEEecCCCCeEEEE-ecCCC-EEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEE-eCCCcEEEEec
Q 013578 252 NNMAAISPNGRFLAAA-AFTAD-VKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA-SKDGTLRVWNI 328 (440)
Q Consensus 252 v~~~~~s~~~~~l~~~-~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~-~~dg~i~iwd~ 328 (440)
...++|+|+|++|+++ ..++. |.+|++.... ...... ...+ .....+.+++|+|+|++++.+ ..++.|++||+
T Consensus 130 ~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g--~~~~~~-~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~ 205 (331)
T 3u4y_A 130 AVGIAISPNGNGLILIDRSSANTVRRFKIDADG--VLFDTG-QEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILET 205 (331)
T ss_dssp EEEEEECTTSSCEEEEEETTTTEEEEEEECTTC--CEEEEE-EEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred ccceEECCCCCEEEEEecCCCceEEEEEECCCC--cEeecC-Cccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEEC
Confidence 5899999999866655 45588 9999986322 111111 1222 334567999999999966554 46889999999
Q ss_pred CccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcCCccc--hhhhh------ccccC
Q 013578 329 NVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSVETGKV--LDTAE------KAHEG 398 (440)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~~~~~--~~~~~------~~h~~ 398 (440)
+++.... ....+. ....+..++|+|||++++++. ++.|.+||..+++. +..+. .....
T Consensus 206 ~~~~~~~----~~~~~~--------~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 273 (331)
T 3u4y_A 206 QNPENIT----LLNAVG--------TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLF 273 (331)
T ss_dssp SSTTSCE----EEEEEE--------CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGT
T ss_pred CCCcccc----eeeecc--------CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcc
Confidence 8654300 011111 012356799999999776653 67899999999877 22221 01112
Q ss_pred CeEEEEecCCCCCCCCCcceEEE-EeeCCCeEEEEeCCCC
Q 013578 399 EITCMAWAPKTIPMGNQQVSVLA-TSSVDKKVKLWLAPSL 437 (440)
Q Consensus 399 ~v~~v~~~~~~~~~~~~~~~~l~-t~~~Dg~i~vw~~~~~ 437 (440)
....++|+|++ ++|+ ++..++.|.+|++...
T Consensus 274 ~~~~~~~spdg--------~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 274 GANQMALNKTE--------TKLFISANISRELKVFTISGK 305 (331)
T ss_dssp TCCCEEECTTS--------SEEEEEETTTTEEEEEETTSC
T ss_pred cccceEECCCC--------CEEEEecCCCCcEEEEEecCC
Confidence 23568999998 6665 4555679999999764
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=1.1e-23 Score=195.89 Aligned_cols=282 Identities=13% Similarity=0.088 Sum_probs=196.7
Q ss_pred EEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecc--ccccc
Q 013578 98 CFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGE--EKAIS 175 (440)
Q Consensus 98 ~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~ 175 (440)
+|+|++.++++++.|++|.+||..+++.. . ....++ .+..++|+|+++++++++.+ ..+.+|+. ....
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~--~--~i~~g~--~~~~v~~spdg~~l~v~~~d---~~V~v~D~~~~t~~- 213 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIV--K--VIDTGY--AVHISRMSASGRYLLVIGRD---ARIDMIDLWAKEPT- 213 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEE--E--EEECST--TEEEEEECTTSCEEEEEETT---SEEEEEETTSSSCE-
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEE--E--EEecCc--ccceEEECCCCCEEEEECCC---CeEEEEECcCCCCc-
Confidence 38899999999999999999999876531 1 111122 37899999999999999876 56667765 2211
Q ss_pred cccccccCCCCCCceeecccccccceeEEEeecccccccCC----CCCeEEEEeeCCceEEEEeCCCCceeeeeeCC---
Q 013578 176 TNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA----DGSTIIASCSEGTDISIWHGKTGKLLGNVDTN--- 248 (440)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--- 248 (440)
....+.....+..+.++| +|+.+++++..+++|.+||..+++++..+..+
T Consensus 214 -----------------------~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~ 270 (543)
T 1nir_A 214 -----------------------KVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT 270 (543)
T ss_dssp -----------------------EEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEEC
T ss_pred -----------------------EEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcc
Confidence 001111122334455688 99944444446899999999999998887652
Q ss_pred --------CCcccEEEecCCCCe-EEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe-
Q 013578 249 --------QLKNNMAAISPNGRF-LAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS- 318 (440)
Q Consensus 249 --------~~~v~~~~~s~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~- 318 (440)
...+..+.++|++.. +++...+++|.+||+...+.. .+..+ .+...+.++.|+|+|++|++++
T Consensus 271 ~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l------~~~~i-~~~~~~~~~~~spdg~~l~va~~ 343 (543)
T 1nir_A 271 VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL------TVTSI-GAAPFLHDGGWDSSHRYFMTAAN 343 (543)
T ss_dssp SSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSC------EEEEE-ECCSSCCCEEECTTSCEEEEEEG
T ss_pred cCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcc------eeEEe-ccCcCccCceECCCCCEEEEEec
Confidence 225778999997665 455667899999998654310 11122 2556788999999999876554
Q ss_pred CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC-CCEEEEec--CCEEEEEEcCC-------ccc
Q 013578 319 KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD-GKILAATH--GSTLQWLSVET-------GKV 388 (440)
Q Consensus 319 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~--~~~i~i~d~~~-------~~~ 388 (440)
.+++|.+||+.++++... +.... ..|......+ ++|+ |++++++. ++.|.+||+.+ +++
T Consensus 344 ~~~~v~v~D~~tg~l~~~-------i~~g~---~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~ 412 (543)
T 1nir_A 344 NSNKVAVIDSKDRRLSAL-------VDVGK---TPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKK 412 (543)
T ss_dssp GGTEEEEEETTTTEEEEE-------EECSS---SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSE
T ss_pred CCCeEEEEECCCCeEEEe-------eccCC---CCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeE
Confidence 588999999998755321 11000 0111111122 4676 66777764 79999999998 788
Q ss_pred hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEee-------CCCeEEEEeCCCCCC
Q 013578 389 LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSS-------VDKKVKLWLAPSLES 439 (440)
Q Consensus 389 ~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~-------~Dg~i~vw~~~~~~~ 439 (440)
+..+ .+|.+.+..++|+|++ ++|++++ .+++|.|||+.+++.
T Consensus 413 v~~l-~~~g~~~~~v~~~pdg--------~~l~v~~~~~~~~~~~~~v~v~d~~~~~~ 461 (543)
T 1nir_A 413 VAEL-QGQGGGSLFIKTHPKS--------SHLYVDTTFNPDARISQSVAVFDLKNLDA 461 (543)
T ss_dssp EEEE-ECSCSCCCCEECCTTC--------CEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred EEEE-EcCCCCceEEEcCCCC--------CcEEEecCCCCCcccCceEEEEECCCCCC
Confidence 8888 4888889999999998 8899887 378999999998763
No 132
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.92 E-value=3.7e-24 Score=202.87 Aligned_cols=278 Identities=10% Similarity=0.086 Sum_probs=187.4
Q ss_pred ccccccc-CcceeEEEEccCCCEEEEeeC-CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578 84 VNTLKGH-GDSVTGLCFSSDGKCLATACA-DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS 161 (440)
Q Consensus 84 ~~~l~~H-~~~V~~l~~s~dg~~l~t~s~-dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~ 161 (440)
++.++.+ ..+|++++|+|||++||+++. ||+++||+++++. ..+....+...+..++|+|| +.++++..+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~-----~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g 86 (582)
T 3o4h_A 13 VRDVERLIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE-----TVKLNREPINSVLDPHYGVG-RVILVRDVSKG 86 (582)
T ss_dssp HHHHHHHHHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE-----EEECCSSCCSEECEECTTCS-EEEEEEECSTT
T ss_pred HHHHHHHhccchheeecCCCCCeEEEEEccCCceeEEEEcCCC-----cEeeecccccccccccCCCC-eEEEEeccCCC
Confidence 3444433 668999999999999999887 9999999986543 22333333357899999999 55555543222
Q ss_pred c--ceEEeecc--ccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCC
Q 013578 162 G--CSLYMYGE--EKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK 237 (440)
Q Consensus 162 ~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~ 237 (440)
. ..++.++. ..... .+.. .... ....++++++..+++...++.+.+||+.
T Consensus 87 ~~~~~l~~~~~~~~g~~~---------------~l~~--~~~~---------~~~~~s~dg~~~~~~s~~~~~~~l~d~~ 140 (582)
T 3o4h_A 87 AEQHALFKVNTSRPGEEQ---------------RLEA--VKPM---------RILSGVDTGEAVVFTGATEDRVALYALD 140 (582)
T ss_dssp SCCEEEEEEETTSTTCCE---------------ECTT--SCSB---------EEEEEEECSSCEEEEEECSSCEEEEEEE
T ss_pred CcceEEEEEeccCCCccc---------------cccC--CCCc---------eeeeeCCCCCeEEEEecCCCCceEEEcc
Confidence 2 23444433 21100 0000 0000 0113367776555554444456699999
Q ss_pred CCceeeeeeCCCCcccEEEecCCCCeEEEEecC----CCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCE
Q 013578 238 TGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFT----ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQ 313 (440)
Q Consensus 238 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 313 (440)
+++.......+. ..++|+|||++|++++.+ +.|++||+..+. ...+..|.+.+..++|+|||++
T Consensus 141 ~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~---------~~~l~~~~~~~~~~~~SpDG~~ 208 (582)
T 3o4h_A 141 GGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG---------LRVFDSGEGSFSSASISPGMKV 208 (582)
T ss_dssp TTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC---------CEEECCSSCEEEEEEECTTSCE
T ss_pred CCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC---------ceEeecCCCccccceECCCCCE
Confidence 887655544332 789999999999988877 678999876543 3456778888999999999999
Q ss_pred EEEEeCCC--cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEE--------eCCCCCEEEEec-CCEEEEEE
Q 013578 314 IITASKDG--TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS--------LSSDGKILAATH-GSTLQWLS 382 (440)
Q Consensus 314 l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~s~~g~~l~~~~-~~~i~i~d 382 (440)
|+++..++ .|++||+.++... . ..++...+..++ |+|||.+++++. ++.+++|+
T Consensus 209 l~~~~~~~~~~i~~~d~~~~~~~-~--------------~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 209 TAGLETAREARLVTVDPRDGSVE-D--------------LELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI 273 (582)
T ss_dssp EEEEECSSCEEEEEECTTTCCEE-E--------------CCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred EEEccCCCeeEEEEEcCCCCcEE-E--------------ccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEE
Confidence 99888888 8999999865432 1 112222344455 999998777665 89999999
Q ss_pred cCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCe---EEEEeCC
Q 013578 383 VETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKK---VKLWLAP 435 (440)
Q Consensus 383 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~---i~vw~~~ 435 (440)
+ |+... .+.+.|.+++|+ ++ .++++++.+.+ +.+|+..
T Consensus 274 ~--g~~~~----~~~~~v~~~~~s-dg--------~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 274 D--GERVE----APQGNHGRVVLW-RG--------KLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp T--TEEEC----CCSSEEEEEEEE-TT--------EEEEEEEETTEEEEEEEETTC
T ss_pred E--CCeec----cCCCceEEEEec-CC--------EEEEEEcCCCCCCeEEEEcCC
Confidence 9 66554 244678999999 87 78888888744 6666654
No 133
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=8.7e-24 Score=213.14 Aligned_cols=312 Identities=13% Similarity=0.126 Sum_probs=207.9
Q ss_pred ccccccccCcceeEEEEccCCCEEEEeeCC------CcEEEEecCCCCCcceeeEEecCCCCCCC-------ceEEEccC
Q 013578 83 DVNTLKGHGDSVTGLCFSSDGKCLATACAD------GVIRVHKLDDASSKSFKFLRINLPPGGPP-------TAVAFADN 149 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~d------g~v~vW~~~~~~~~~~~~~~~~~~~~~~v-------~~v~~~~~ 149 (440)
..+.+.+|.+.|.+++|||||++||+++.+ ..|.+|++.++. ......|...+ ..++|+||
T Consensus 44 ~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~------~~~lt~~~~~~~~~~~~~~~~~~SpD 117 (1045)
T 1k32_A 44 STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE------IKRITYFSGKSTGRRMFTDVAGFDPD 117 (1045)
T ss_dssp CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE------EEECCCCCEEEETTEECSEEEEECTT
T ss_pred cEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC------eEEcccCCCcccccccccccccCCCC
Confidence 356788999999999999999999988654 378999987653 22334455555 89999999
Q ss_pred CCeEEEEeecC---CcceEEeecccccccc--ccccc------------------cC-----------------------
Q 013578 150 ATSIVVATHNL---SGCSLYMYGEEKAIST--NEGKQ------------------QS----------------------- 183 (440)
Q Consensus 150 ~~~l~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~------------------~~----------------------- 183 (440)
|+.++++..+. ....++.++....... ..... ..
T Consensus 118 g~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~ 197 (1045)
T 1k32_A 118 GNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFK 197 (1045)
T ss_dssp CCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEE
T ss_pred CEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeE
Confidence 99444444321 2245666654332111 00000 00
Q ss_pred -----------------------CCCCCceeecccc-cccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC
Q 013578 184 -----------------------KLPGPEIKWEHHK-VHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG 239 (440)
Q Consensus 184 -----------------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 239 (440)
........|.... ......+..........++|+|+ .++.+ .++.|++||+...
T Consensus 198 ~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~-~la~~-~~~~i~~~d~~~~ 275 (1045)
T 1k32_A 198 KIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGR-RILFS-KGGSIYIFNPDTE 275 (1045)
T ss_dssp EEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSS-CEEEE-ETTEEEEECTTTC
T ss_pred ECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCC-EEEEE-eCCEEEEecCCce
Confidence 0000001111100 00000000001122345678888 45554 4888999999544
Q ss_pred ceeeeeeC-----------CCCcccEEEec-CCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc-ceEEEE
Q 013578 240 KLLGNVDT-----------NQLKNNMAAIS-PNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS-AVTWLC 306 (440)
Q Consensus 240 ~~~~~~~~-----------~~~~v~~~~~s-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~ 306 (440)
+ +..+.. +...+..++|+ |+|++|++++ ++.|.+|++..+. ...+..|.. .+.+++
T Consensus 276 ~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~---------~~~~~~~~~~~~~~~~ 344 (1045)
T 1k32_A 276 K-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY---------VLKVPEPLRIRYVRRG 344 (1045)
T ss_dssp C-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB---------EEECSCCSCEEEEEEC
T ss_pred E-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc---------eEEccCCCcceEEeee
Confidence 3 334443 23368999999 9999999988 8899999875432 233556777 899999
Q ss_pred EcCCCCEEEEEeCCCcEE-EEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcC
Q 013578 307 FAPNSEQIITASKDGTLR-VWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVE 384 (440)
Q Consensus 307 ~~p~~~~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~ 384 (440)
|+ +|+.|+.++.++.+. +||+.++... . + .++...+..++|+|||++|+++. ++.|++||+.
T Consensus 345 ~s-dg~~l~~~s~~~~l~~~~d~~~~~~~--------~----l---~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~ 408 (1045)
T 1k32_A 345 GD-TKVAFIHGTREGDFLGIYDYRTGKAE--------K----F---EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE 408 (1045)
T ss_dssp SS-SEEEEEEEETTEEEEEEEETTTCCEE--------E----C---CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred Ec-CCCeEEEEECCCceEEEEECCCCCce--------E----e---cCCccceeeeEECCCCCEEEEECCCCeEEEEECC
Confidence 99 999999999888888 8898754221 0 0 13345578899999999998765 7899999999
Q ss_pred CccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCC----------eEEEEeCCCCC
Q 013578 385 TGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDK----------KVKLWLAPSLE 438 (440)
Q Consensus 385 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg----------~i~vw~~~~~~ 438 (440)
+++....+ .+|.+.+.+++|+||+ ++|++++.++ .|++||+.+++
T Consensus 409 tg~~~~~~-~~~~~~v~~~~~SpDG--------~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 409 TGKPTVIE-RSREAMITDFTISDNS--------RFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp TCCEEEEE-ECSSSCCCCEEECTTS--------CEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred CCceEEec-cCCCCCccceEECCCC--------CeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 99877665 4788999999999998 8888887654 89999998754
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=7.8e-23 Score=180.65 Aligned_cols=284 Identities=11% Similarity=0.112 Sum_probs=178.7
Q ss_pred EEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccc--ccccccccccc
Q 013578 105 CLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEE--KAISTNEGKQQ 182 (440)
Q Consensus 105 ~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 182 (440)
.+++++.|+.|++|+++..... .... ...+...+..++|+|+++++++++.+. ..+.+|+.. .....
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~--~~v~~~~~~~~~~~~~------ 75 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGAL--TLTQ-VVDVPGQVQPMVVSPDKRYLYVGVRPE--FRVLAYRIAPDDGALT------ 75 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCE--EEEE-EEECSSCCCCEEECTTSSEEEEEETTT--TEEEEEEECTTTCCEE------
T ss_pred EEEeCCCCCeEEEEEECCCCcE--EEee-eEecCCCCceEEECCCCCEEEEeecCC--CeEEEEEecCCCCcee------
Confidence 4445578999999999642211 1111 234557899999999999998888753 455555543 11000
Q ss_pred CCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCC---CCceeeeeeCCCCcccEEEecC
Q 013578 183 SKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK---TGKLLGNVDTNQLKNNMAAISP 259 (440)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~---~~~~~~~~~~~~~~v~~~~~s~ 259 (440)
....+.....+..+.++++++.+++++..++.|.+||+. +.+.+..+..+ ..+.+++|+|
T Consensus 76 ----------------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~ 138 (343)
T 1ri6_A 76 ----------------FAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP 138 (343)
T ss_dssp ----------------EEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT
T ss_pred ----------------eccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC
Confidence 000001111234455689998555666668999999994 33444554443 4578899999
Q ss_pred CCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeee--eeec-cccceEEEEEcCCCCEEEEEe-CCCcEEEEecCccccc
Q 013578 260 NGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVM--QLKG-HKSAVTWLCFAPNSEQIITAS-KDGTLRVWNINVRYHL 334 (440)
Q Consensus 260 ~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~-h~~~v~~~~~~p~~~~l~s~~-~dg~i~iwd~~~~~~~ 334 (440)
+++++++++ .++.|++||+.... ... ... .+.. ....+.+++|+|++++|+.++ .++.|.+||++....
T Consensus 139 dg~~l~~~~~~~~~v~~~d~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g- 212 (343)
T 1ri6_A 139 DNRTLWVPALKQDRICLFTVSDDG--HLV---AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG- 212 (343)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTS--CEE---EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS-
T ss_pred CCCEEEEecCCCCEEEEEEecCCC--cee---eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCC-
Confidence 999888887 89999999996421 111 111 2222 335788999999999776554 789999999963110
Q ss_pred cCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-e-cCCEEEEEEcC--Cc--cchhhhhccccCCeEEEEecCC
Q 013578 335 DEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-T-HGSTLQWLSVE--TG--KVLDTAEKAHEGEITCMAWAPK 408 (440)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~-~~~~i~i~d~~--~~--~~~~~~~~~h~~~v~~v~~~~~ 408 (440)
.......... ..........+..++|+|+|++|++ + .++.|.+||+. ++ +.+..+. .+ ..+.+++|+|+
T Consensus 213 --~~~~~~~~~~-~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~-~~-~~~~~~~~s~d 287 (343)
T 1ri6_A 213 --NIECVQTLDM-MPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP-TE-TQPRGFNVDHS 287 (343)
T ss_dssp --CCEEEEEEEC-SCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE-CS-SSCCCEEECTT
T ss_pred --cEEEEeeccc-cCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec-CC-CccceEEECCC
Confidence 0000000000 0001112234567999999997775 3 37999999998 33 3444442 23 34899999999
Q ss_pred CCCCCCCcceEEEEee-CCCeEEEEeCC
Q 013578 409 TIPMGNQQVSVLATSS-VDKKVKLWLAP 435 (440)
Q Consensus 409 ~~~~~~~~~~~l~t~~-~Dg~i~vw~~~ 435 (440)
+ ++|++++ .|+.|.+|+++
T Consensus 288 g--------~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 288 G--------KYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp S--------SEEEEECTTTCEEEEEEEE
T ss_pred C--------CEEEEecCCCCeEEEEEEc
Confidence 8 7777766 68999999554
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=2.3e-23 Score=179.96 Aligned_cols=255 Identities=12% Similarity=0.138 Sum_probs=178.3
Q ss_pred CCCCCcccCcc---ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCC-CCCcceeeEEecCCC-CCCCceEEE
Q 013578 72 DKDQNKRHHPL---DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDD-ASSKSFKFLRINLPP-GGPPTAVAF 146 (440)
Q Consensus 72 ~~~~~~~~~~~---~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~-~~~~~~~~~~~~~~~-~~~v~~v~~ 146 (440)
..++.+..|.. ....+..|.+.|.+++|+|||++|++++ ++.|++||+.+ +... .....+ ...+.+++|
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~-----~~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE-----KVDTGFATICNNDHGI 92 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE-----ECCCTTCCCBCSCCEE
T ss_pred CcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce-----EeccccccccccceEE
Confidence 34444554443 2445677999999999999999999987 78999999987 5432 222222 367888999
Q ss_pred ccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEee
Q 013578 147 ADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCS 226 (440)
Q Consensus 147 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 226 (440)
+|++++++++..+. +
T Consensus 93 spdg~~l~~~~~~~--------------------------------------------------------~--------- 107 (297)
T 2ojh_A 93 SPDGALYAISDKVE--------------------------------------------------------F--------- 107 (297)
T ss_dssp CTTSSEEEEEECTT--------------------------------------------------------T---------
T ss_pred CCCCCEEEEEEeCC--------------------------------------------------------C---------
Confidence 99988776654320 0
Q ss_pred CCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEE-EEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEE
Q 013578 227 EGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLA-AAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWL 305 (440)
Q Consensus 227 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 305 (440)
....|..|+..+++. ..+..+. .+..++|+|+++.|+ ++..++.+++|+++.... ....+..|...+.++
T Consensus 108 ~~~~l~~~~~~~~~~-~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~ 178 (297)
T 2ojh_A 108 GKSAIYLLPSTGGTP-RLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG-------VETRLTHGEGRNDGP 178 (297)
T ss_dssp SSCEEEEEETTCCCC-EECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC-------CEEECCCSSSCEEEE
T ss_pred CcceEEEEECCCCce-EEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCC-------cceEcccCCCccccc
Confidence 123355566555543 3333333 478889999999887 677899999999865431 234556677889999
Q ss_pred EEcCCCCEEEEEe-CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-C--------
Q 013578 306 CFAPNSEQIITAS-KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-G-------- 375 (440)
Q Consensus 306 ~~~p~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~-------- 375 (440)
+|+|++++|+.++ .|+.+++|++..... .. .....+...+..++|+|+|++|+.+. +
T Consensus 179 ~~s~dg~~l~~~~~~~~~~~i~~~~~~~~------~~-------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 245 (297)
T 2ojh_A 179 DYSPDGRWIYFNSSRTGQMQIWRVRVDGS------SV-------ERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPR 245 (297)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTSS------CE-------EECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCS
T ss_pred eECCCCCEEEEEecCCCCccEEEECCCCC------Cc-------EEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccc
Confidence 9999999887766 589999999862210 11 11122345678899999999888754 2
Q ss_pred ---CEEEEEEcCCccchhhh-hccccCCeEEEEecCCCCCCCCCcceEEEEeeCCC
Q 013578 376 ---STLQWLSVETGKVLDTA-EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDK 427 (440)
Q Consensus 376 ---~~i~i~d~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg 427 (440)
+.|++||+.+++..... ..+|...+.+++|+|++ ++|++++.|.
T Consensus 246 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg--------~~l~~~~~~~ 293 (297)
T 2ojh_A 246 DLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDG--------DEFAYVRYFP 293 (297)
T ss_dssp SEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTS--------SEEEEEEECC
T ss_pred cCceEEEEEecCCCCceeeeccCCCCcccccceECCCC--------CEEEEEEecc
Confidence 56999999988753322 13678899999999998 7787777654
No 136
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=2.7e-23 Score=202.94 Aligned_cols=289 Identities=10% Similarity=0.094 Sum_probs=189.3
Q ss_pred CcceeEEEEccCCCEEEEeeC-CC-----cEEEEecCCCCCcceeeEEecCCCC----------------------CCCc
Q 013578 91 GDSVTGLCFSSDGKCLATACA-DG-----VIRVHKLDDASSKSFKFLRINLPPG----------------------GPPT 142 (440)
Q Consensus 91 ~~~V~~l~~s~dg~~l~t~s~-dg-----~v~vW~~~~~~~~~~~~~~~~~~~~----------------------~~v~ 142 (440)
...|.+++|||||++|++++. |+ .|++||+.+++.. .... ...+. ..+.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTR--LLVD-SKVVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEE--EEEC-GGGTC--------------------CCEESC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCcee--Eccc-hhhcccccccccchhhhhhhhhhhccccCcc
Confidence 457999999999999999998 88 8999999876532 1111 11111 2378
Q ss_pred eEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEE
Q 013578 143 AVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTII 222 (440)
Q Consensus 143 ~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 222 (440)
+++|+|||++|++++. ..+++|+....... ....+ ..+.. ......++|||+ .+
T Consensus 113 ~~~~SpDg~~l~~~~~----~~i~~~d~~~~~~~----~~~~l----------~~~~~-------~~~~~~~SPDG~-~l 166 (741)
T 2ecf_A 113 DYQWSPDAQRLLFPLG----GELYLYDLKQEGKA----AVRQL----------THGEG-------FATDAKLSPKGG-FV 166 (741)
T ss_dssp CCEECTTSSEEEEEET----TEEEEEESSSCSTT----SCCBC----------CCSSS-------CEEEEEECTTSS-EE
T ss_pred eeEECCCCCEEEEEeC----CcEEEEECCCCCcc----eEEEc----------ccCCc-------ccccccCCCCCC-EE
Confidence 9999999999999875 57777776543000 00000 00001 112234589999 66
Q ss_pred EEeeCCceEEEEeCCCCceeeeeeCCCCc----------------ccEEEecCCCCeEEEEecCC---------------
Q 013578 223 ASCSEGTDISIWHGKTGKLLGNVDTNQLK----------------NNMAAISPNGRFLAAAAFTA--------------- 271 (440)
Q Consensus 223 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~----------------v~~~~~s~~~~~l~~~~~dg--------------- 271 (440)
+.++. +.|++||+.+++.......+... +..++|+|||++|++++.|+
T Consensus 167 a~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~ 245 (741)
T 2ecf_A 167 SFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADR 245 (741)
T ss_dssp EEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSC
T ss_pred EEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCc
Confidence 66654 57999999988766544433321 47899999999999998765
Q ss_pred ------------------CEEEEEeEe-cCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC-----CCcEEEEe
Q 013578 272 ------------------DVKVWEIVY-SKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK-----DGTLRVWN 327 (440)
Q Consensus 272 ------------------~i~i~d~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~-----dg~i~iwd 327 (440)
.|++||+.. ++. . .+.....|...+.+++| |||++|+.++. +..|++||
T Consensus 246 ~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~---~---~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d 318 (741)
T 2ecf_A 246 TDVIEQRYPAAGDANVQVKLGVISPAEQAQT---Q---WIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVT 318 (741)
T ss_dssp EEEEEEECCBTTSCCCEEEEEEECSSTTCCC---E---EECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEE
T ss_pred ccceEeecCCCCCCCCeeEEEEEECCCCCce---E---EecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEE
Confidence 677777754 331 0 11111247788999999 99999987764 56799999
Q ss_pred cCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcC-CccchhhhhccccCCeEEE-E
Q 013578 328 INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVE-TGKVLDTAEKAHEGEITCM-A 404 (440)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~-~~~~~~~~~~~h~~~v~~v-~ 404 (440)
+.++.... ... .........+..++|+|||++++++. ++.+++|... +++ ...+ ..|...|..+ .
T Consensus 319 ~~~g~~~~-------~~~---~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l-~~~~~~v~~~~~ 386 (741)
T 2ecf_A 319 LASNQQRV-------LAH---ETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAAL-THGNWSVDELLA 386 (741)
T ss_dssp TTTCCEEE-------EEE---EECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEES-CCSSSCEEEEEE
T ss_pred CCCCceEE-------EEE---cCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeee-eecceEEEeEeE
Confidence 98764321 000 00000001245789999999877765 6666666554 344 5555 4677788887 5
Q ss_pred ecCCCCCCCCCcceEE-EEeeCCC--eEEEEeCCC
Q 013578 405 WAPKTIPMGNQQVSVL-ATSSVDK--KVKLWLAPS 436 (440)
Q Consensus 405 ~~~~~~~~~~~~~~~l-~t~~~Dg--~i~vw~~~~ 436 (440)
|+|++ +.| ++++.|+ .++||+++.
T Consensus 387 ~s~dg--------~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 387 VDEKA--------GLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp EETTT--------TEEEEEECSSCTTCBEEEEEET
T ss_pred EeCCC--------CEEEEEEeCCCCceEEEEEEEc
Confidence 99998 555 4555565 899999853
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=2.5e-23 Score=202.61 Aligned_cols=289 Identities=12% Similarity=0.042 Sum_probs=185.6
Q ss_pred cceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCC---CCceEEEccCCCeEEEEeecCCc------
Q 013578 92 DSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGG---PPTAVAFADNATSIVVATHNLSG------ 162 (440)
Q Consensus 92 ~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~---~v~~v~~~~~~~~l~~~~~~~~~------ 162 (440)
..+.+++|+|||+++++ +.||+|++||+.+++.. .....+.. .+.+++|+|||++|++++.+...
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~-----~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~ 90 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTST-----VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYT 90 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE-----EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCC
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE-----EEeccccccccccceEEECCCCCEEEEEecCccceeecce
Confidence 34788999999998776 78999999999887532 22233332 48999999999999999765332
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL 242 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 242 (440)
..+++|+........- .....+ ........++|||+ .|+.++. +.|++||+.+++..
T Consensus 91 ~~i~~~d~~~~~~~~l--------------~~~~~~-------~~~~~~~~~SPdG~-~la~~~~-~~i~~~~~~~g~~~ 147 (723)
T 1xfd_A 91 GYYVLSKIPHGDPQSL--------------DPPEVS-------NAKLQYAGWGPKGQ-QLIFIFE-NNIYYCAHVGKQAI 147 (723)
T ss_dssp SEEEEEESSSCCCEEC--------------CCTTCC-------SCCCSBCCBCSSTT-CEEEEET-TEEEEESSSSSCCE
T ss_pred eeEEEEECCCCceEec--------------cCCccc-------cccccccEECCCCC-EEEEEEC-CeEEEEECCCCceE
Confidence 4667776554321000 000000 00123455699999 5666655 68999999988776
Q ss_pred eeeeCCCCcc------------------cEEEecCCCCeEEEEecCC---------------------------------
Q 013578 243 GNVDTNQLKN------------------NMAAISPNGRFLAAAAFTA--------------------------------- 271 (440)
Q Consensus 243 ~~~~~~~~~v------------------~~~~~s~~~~~l~~~~~dg--------------------------------- 271 (440)
.....+...+ .+++|+|||+.|++++.++
T Consensus 148 ~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 227 (723)
T 1xfd_A 148 RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPS 227 (723)
T ss_dssp EEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCE
T ss_pred EEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCe
Confidence 6554433333 7899999999999987653
Q ss_pred -CEEEEEeEecCCCceeeeeeeeeeec------cccceEEEEEcCCCCEEEEEeC----CCcEEEEecCccccccCCCCc
Q 013578 272 -DVKVWEIVYSKDGLVKAVTSVMQLKG------HKSAVTWLCFAPNSEQIITASK----DGTLRVWNINVRYHLDEDPKT 340 (440)
Q Consensus 272 -~i~i~d~~~~~~~~~~~~~~~~~~~~------h~~~v~~~~~~p~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~ 340 (440)
.|++||+..+. ....+.. +...+.+++|+|||++|++.+. +..|++||+.++....
T Consensus 228 ~~l~~~d~~~~~--------~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~----- 294 (723)
T 1xfd_A 228 ISLHVIGLNGPT--------HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK----- 294 (723)
T ss_dssp EEEEEEESSSSC--------CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE-----
T ss_pred eEEEEEECCCCc--------eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceE-----
Confidence 67788875443 1223333 3667899999999998877653 3579999998664321
Q ss_pred cccccccccCCCCCee-eeeeEEeCCCCCEEEEe---cCC------EEEEEE-cCCccc--hhhhhccccCCeEE-EEec
Q 013578 341 LKVLPIPLLDSNGATL-QYDRLSLSSDGKILAAT---HGS------TLQWLS-VETGKV--LDTAEKAHEGEITC-MAWA 406 (440)
Q Consensus 341 ~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~---~~~------~i~i~d-~~~~~~--~~~~~~~h~~~v~~-v~~~ 406 (440)
... ....+... ....++|+|||+.|+.. .++ .|++|| ..+++. ...+. .+...+.. ++|+
T Consensus 295 --~~~---~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~-~~~~~~~~~~~~s 368 (723)
T 1xfd_A 295 --KHE---DESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT-SGDWDVTKILAYD 368 (723)
T ss_dssp --EEE---EECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC-CSSSCEEEEEEEE
T ss_pred --EEE---eccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEee-cCCeEEEeeeEEc
Confidence 000 00000000 01368999999977643 255 577777 344441 44443 33344554 6999
Q ss_pred CCCCCCCCCcceEEEEeeCC---CeEEEEeCCC
Q 013578 407 PKTIPMGNQQVSVLATSSVD---KKVKLWLAPS 436 (440)
Q Consensus 407 ~~~~~~~~~~~~~l~t~~~D---g~i~vw~~~~ 436 (440)
|++ +.|+..+.+ +.+++|+++.
T Consensus 369 pdg--------~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 369 EKG--------NKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp TTT--------TEEEEEESSSCTTCCEEEEECS
T ss_pred CCC--------CEEEEEEcCCCCcceEEEEEeC
Confidence 998 677655554 8899999864
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=2.7e-22 Score=177.97 Aligned_cols=281 Identities=10% Similarity=0.076 Sum_probs=191.3
Q ss_pred cCcceeEEEEccCCCEEEEeeC-------CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 90 HGDSVTGLCFSSDGKCLATACA-------DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 90 H~~~V~~l~~s~dg~~l~t~s~-------dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
....+..++|+|+|++|++++. ++.|.+||..+++.. .... ....+..++|+|++++++++... .
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~--~~~~----~~~~~~~~~~s~dg~~l~v~~~~--~ 110 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT--QAIH----NDLKPFGATINNTTQTLWFGNTV--N 110 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE--EEEE----ESSCCCSEEEETTTTEEEEEETT--T
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE--EEEe----cCCCcceEEECCCCCEEEEEecC--C
Confidence 3456889999999998888874 568999999876522 1111 23558899999999988777654 2
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEe-eCCceEEEEeCCCCce
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASC-SEGTDISIWHGKTGKL 241 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~i~vwd~~~~~~ 241 (440)
..+.+|+............. ...... ......+..+.++++++.+++++ +.++.|.+||..+++.
T Consensus 111 ~~v~~~d~~~~~~~~~~~~~-------------~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~ 176 (353)
T 3vgz_A 111 SAVTAIDAKTGEVKGRLVLD-------------DRKRTE-EVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL 176 (353)
T ss_dssp TEEEEEETTTCCEEEEEESC-------------CCCCCS-SCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE
T ss_pred CEEEEEeCCCCeeEEEEecC-------------CCcccc-ccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce
Confidence 46677765443211100000 000000 00000112344578888555555 3578899999999998
Q ss_pred eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee----ccccceEEEEEcCCCCEEEEE
Q 013578 242 LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK----GHKSAVTWLCFAPNSEQIITA 317 (440)
Q Consensus 242 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----~h~~~v~~~~~~p~~~~l~s~ 317 (440)
+..+..+...+..++|+|++++|++++.++.|.+||+..++ ....+. ++...+.+++|+|++++++.+
T Consensus 177 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 177 KTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNK--------ILSRKKLLDDGKEHFFINISLDTARQRAFIT 248 (353)
T ss_dssp EEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTE--------EEEEEECCCSSSCCCEEEEEEETTTTEEEEE
T ss_pred EEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCe--------EEEEEEcCCCCCCcccceEEECCCCCEEEEE
Confidence 88887555668889999999999999999999999986543 222222 245668899999999987766
Q ss_pred eC-CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe--cCCEEEEEEcCCccchhhhhc
Q 013578 318 SK-DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT--HGSTLQWLSVETGKVLDTAEK 394 (440)
Q Consensus 318 ~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~--~~~~i~i~d~~~~~~~~~~~~ 394 (440)
+. ++.|.+||+.++..... +.. +. ...++|+|+|++++++ .++.|.+||..+++.+..+.
T Consensus 249 ~~~~~~v~~~d~~~~~~~~~-------~~~------~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~- 311 (353)
T 3vgz_A 249 DSKAAEVLVVDTRNGNILAK-------VAA------PE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD- 311 (353)
T ss_dssp ESSSSEEEEEETTTCCEEEE-------EEC------SS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE-
T ss_pred eCCCCEEEEEECCCCcEEEE-------EEc------CC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe-
Confidence 64 58999999986643211 111 11 1369999999966554 37999999999999887764
Q ss_pred cccCCeEEEEecCCCCCCCCCcceEEEEeeCC
Q 013578 395 AHEGEITCMAWAPKTIPMGNQQVSVLATSSVD 426 (440)
Q Consensus 395 ~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D 426 (440)
....+.+++|+|++ ++|+.+..+
T Consensus 312 -~~~~~~~~~~s~dg--------~~l~v~~~~ 334 (353)
T 3vgz_A 312 -TPTHPNSLALSADG--------KTLYVSVKQ 334 (353)
T ss_dssp -CCSEEEEEEECTTS--------CEEEEEEEC
T ss_pred -cCCCCCeEEEcCCC--------CEEEEEEcc
Confidence 34578999999998 655555544
No 139
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=9.1e-23 Score=179.75 Aligned_cols=274 Identities=10% Similarity=0.043 Sum_probs=184.7
Q ss_pred CEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCC-CCceEEEccCCCeEEEEeecCCcceEEeecccccccccccccc
Q 013578 104 KCLATACADGVIRVHKLDDASSKSFKFLRINLPPGG-PPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQ 182 (440)
Q Consensus 104 ~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (440)
++|++++.++.|++||+.+++.. .....++.. .+..++|+|+++.++++... ...+.+|+.........
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~----~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~--~~~v~~~d~~~~~~~~~---- 71 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVD----KVITIADAGPTPMVPMVAPGGRIAYATVNK--SESLVKIDLVTGETLGR---- 71 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEE----EEEECTTCTTCCCCEEECTTSSEEEEEETT--TTEEEEEETTTCCEEEE----
T ss_pred cEEEEcCCCCeEEEEECCCCcEE----EEEEcCCCCCCccceEEcCCCCEEEEEeCC--CCeEEEEECCCCCeEee----
Confidence 57999999999999999876421 112222222 58899999999988776644 34566676543311100
Q ss_pred CCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEee------------CCceEEEEeCCCCceeeeeeCCCC
Q 013578 183 SKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCS------------EGTDISIWHGKTGKLLGNVDTNQL 250 (440)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~------------~d~~i~vwd~~~~~~~~~~~~~~~ 250 (440)
+.. .... .....+..+.++++|+ .++++. .++.|.+||+.+++.+..+.. ..
T Consensus 72 ---------~~~--~~~~---~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~ 135 (337)
T 1pby_B 72 ---------IDL--STPE---ERVKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PR 135 (337)
T ss_dssp ---------EEC--CBTT---EEEECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CS
T ss_pred ---------EEc--CCcc---cccccccceEECCCCC-EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CC
Confidence 000 0000 0011234456688998 555554 578999999999888877765 34
Q ss_pred cccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC---------
Q 013578 251 KNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG--------- 321 (440)
Q Consensus 251 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg--------- 321 (440)
.+..++|+|++++|+++ ++.|++||+..++ ....+..+.. ...+.|+|++..|+..+.++
T Consensus 136 ~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~--------~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 204 (337)
T 1pby_B 136 QITMLAWARDGSKLYGL--GRDLHVMDPEAGT--------LVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYT 204 (337)
T ss_dssp SCCCEEECTTSSCEEEE--SSSEEEEETTTTE--------EEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred CcceeEECCCCCEEEEe--CCeEEEEECCCCc--------Eeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeec
Confidence 57889999999998888 6899999986543 2333332220 11237899988765554332
Q ss_pred ---------------cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCc
Q 013578 322 ---------------TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETG 386 (440)
Q Consensus 322 ---------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~ 386 (440)
.|.+||+.++... .... ..+...+..++|+|+|++++++ ++.|++||+.++
T Consensus 205 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~--------~~~~-----~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~ 270 (337)
T 1pby_B 205 ARKDIDPADPTAYRTGLLTMDLETGEMA--------MREV-----RIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKN 270 (337)
T ss_dssp EBTTSCTTSGGGEEEEEEEEETTTCCEE--------EEEE-----EECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTT
T ss_pred cccccccccccccccceEEEeCCCCCce--------Eeec-----CCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCC
Confidence 4688888765331 0110 1112335679999999999888 799999999999
Q ss_pred cchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 387 KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 387 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
+.+..+. ....+.+++|+|++ ++|++++.|+.|++||+.+++
T Consensus 271 ~~~~~~~--~~~~~~~~~~s~dg--------~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 271 ASIKRVP--LPHSYYSVNVSTDG--------STVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp EEEEEEE--CSSCCCEEEECTTS--------CEEEEESBSSEEEEEETTTCC
T ss_pred cCcceec--CCCceeeEEECCCC--------CEEEEEcCCCcEEEEECcCCc
Confidence 8877764 34568999999998 788888889999999998875
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=5.5e-22 Score=192.54 Aligned_cols=294 Identities=14% Similarity=0.145 Sum_probs=188.4
Q ss_pred cceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccc
Q 013578 92 DSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEE 171 (440)
Q Consensus 92 ~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~ 171 (440)
..|.+++|||| ++++.+ .|+.|++||+.++.. .....+...+.+++|+|||++++++. + ..+++|+..
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~------~~l~~~~~~~~~~~~SpdG~~la~~~-~---~~i~v~~~~ 149 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKV------TYLFDTNEETASLDFSPVGDRVAYVR-N---HNLYIARGG 149 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEE------EEEECCTTCCTTCEECTTSSEEEEEE-T---TEEEEEECB
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCce------EEccCCcccccCCcCCCCCCEEEEEE-C---CeEEEEecC
Confidence 56999999999 666555 359999999987532 12223456789999999999999863 3 578888765
Q ss_pred c-----ccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEee--------------------
Q 013578 172 K-----AISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCS-------------------- 226 (440)
Q Consensus 172 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-------------------- 226 (440)
. ......... ......+... ..... ........++|||+ +|++++
T Consensus 150 ~~~~~~g~~~~~~~~----~~~~~~~g~~-~~~ee----~~~~~~~~~SpDg~-~la~~~~d~~~~~~~~~~~~~~~~~~ 219 (706)
T 2z3z_A 150 KLGEGMSRAIAVTID----GTETLVYGQA-VHQRE----FGIEKGTFWSPKGS-CLAFYRMDQSMVKPTPIVDYHPLEAE 219 (706)
T ss_dssp CTTSCCCCCEESCSC----CBTTEEESSC-CGGGC----TTCCCSEEECTTSS-EEEEEEEECTTSCCEEEEECCSSSCE
T ss_pred cccccCCCcEEeccC----CCCCeEcccc-hhhhh----cCCCceEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCc
Confidence 4 211100000 0000000000 00000 00123455689999 555555
Q ss_pred -------------CCceEEEEeCCCCceeeeee--CCCCcccEEEecCCCCeEEEEecCC-----CEEEEEeEecCCCce
Q 013578 227 -------------EGTDISIWHGKTGKLLGNVD--TNQLKNNMAAISPNGRFLAAAAFTA-----DVKVWEIVYSKDGLV 286 (440)
Q Consensus 227 -------------~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~ 286 (440)
.+..|++||+.+++...... .+...+..++|+|||++|++++.++ .|++||+..+.
T Consensus 220 ~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~---- 295 (706)
T 2z3z_A 220 SKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR---- 295 (706)
T ss_dssp EEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC----
T ss_pred eEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc----
Confidence 44679999999887654432 3456688999999999999988775 89999976542
Q ss_pred eeeeeeeeeecccc---ceEEEEEcC--CCCEEEEEeCCCcEEEEecC-ccccccCCCCccccccccccCCCCCeeeeee
Q 013578 287 KAVTSVMQLKGHKS---AVTWLCFAP--NSEQIITASKDGTLRVWNIN-VRYHLDEDPKTLKVLPIPLLDSNGATLQYDR 360 (440)
Q Consensus 287 ~~~~~~~~~~~h~~---~v~~~~~~p--~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 360 (440)
....+.. ..+.. .+.+++|+| +|++|++++.|+.+++|++. .+..+ ..+ ..+...+..
T Consensus 296 -~~~~~~~-~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~-------~~l-------~~~~~~v~~ 359 (706)
T 2z3z_A 296 -FVRTLFV-ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLI-------RQV-------TKGEWEVTN 359 (706)
T ss_dssp -EEEEEEE-EECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEE-------EEC-------CCSSSCEEE
T ss_pred -eeeEEEE-ccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEE-------Eec-------CCCCeEEEe
Confidence 0011111 11222 346789999 99999999999999999876 22111 111 122333555
Q ss_pred -EEeCCCCCEEEEe-c-CC----EEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCC----CeE
Q 013578 361 -LSLSSDGKILAAT-H-GS----TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD----KKV 429 (440)
Q Consensus 361 -~~~s~~g~~l~~~-~-~~----~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D----g~i 429 (440)
++|+|+|+.|+.+ . ++ .|+.||..+++ ...+ .|...+.+++|+|++ ++|+....+ +.|
T Consensus 360 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l--~~~~~~~~~~~spdg--------~~l~~~~~~~~~p~~i 428 (706)
T 2z3z_A 360 FAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDL--TPESGMHRTQLSPDG--------SAIIDIFQSPTVPRKV 428 (706)
T ss_dssp EEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEES--CCSSSEEEEEECTTS--------SEEEEEEECSSCSCEE
T ss_pred eeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceec--cCCCceEEEEECCCC--------CEEEEEecCCCCCcEE
Confidence 7999999977654 3 33 77788887776 3333 267789999999998 677665443 569
Q ss_pred EEEeCCCCC
Q 013578 430 KLWLAPSLE 438 (440)
Q Consensus 430 ~vw~~~~~~ 438 (440)
++|++.+++
T Consensus 429 ~l~d~~~~~ 437 (706)
T 2z3z_A 429 TVTNIGKGS 437 (706)
T ss_dssp EEEESSSCE
T ss_pred EEEECCCCe
Confidence 999997753
No 141
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=8.1e-23 Score=185.15 Aligned_cols=215 Identities=13% Similarity=0.119 Sum_probs=150.4
Q ss_pred cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCc------ceee----EEecCCCCCCCceEEEccCCCeEEEEeec
Q 013578 90 HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSK------SFKF----LRINLPPGGPPTAVAFADNATSIVVATHN 159 (440)
Q Consensus 90 H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~------~~~~----~~~~~~~~~~v~~v~~~~~~~~l~~~~~~ 159 (440)
+...++.+++++++.++++++.|+ ++||+....... .... ......+...|.+++|+|++++|+++
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~--- 110 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSAC--- 110 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEE---
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEE---
Confidence 345689999999999999999998 999886421100 0000 00112234456677776665533211
Q ss_pred CCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC
Q 013578 160 LSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG 239 (440)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 239 (440)
..+++.|+.|++||+.++
T Consensus 111 --------------------------------------------------------------~~sgs~d~~v~iwd~~~~ 128 (434)
T 2oit_A 111 --------------------------------------------------------------MMSSEYGSIIAFFDVRTF 128 (434)
T ss_dssp --------------------------------------------------------------EEETTTEEEEEEEEHHHH
T ss_pred --------------------------------------------------------------EeccCCCceEEEEEcccc
Confidence 006788999999998654
Q ss_pred --------ce---eeeeeCCCCcccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEE
Q 013578 240 --------KL---LGNVDTNQLKNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF 307 (440)
Q Consensus 240 --------~~---~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 307 (440)
+. +..+..|...|.+++|+|+ +++|++++.||+|++||++... ......+|...|.+++|
T Consensus 129 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~--------~~~~~~~~~~~v~~v~w 200 (434)
T 2oit_A 129 SNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV--------KVCATLPSTVAVTSVCW 200 (434)
T ss_dssp HCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE--------EEEEEECGGGCEEEEEE
T ss_pred ccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc--------ceeeccCCCCceeEEEE
Confidence 22 3455668889999999998 8999999999999999997653 34455678999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--C------CEEE
Q 013578 308 APNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--G------STLQ 379 (440)
Q Consensus 308 ~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~------~~i~ 379 (440)
+|+|++|++|+.||+|++||++ +... ..+..+......+...+.+++|++++.++++.. + ..++
T Consensus 201 spdg~~lasgs~dg~v~iwd~~-~~~~-------~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~ 272 (434)
T 2oit_A 201 SPKGKQLAVGKQNGTVVQYLPT-LQEK-------KVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVV 272 (434)
T ss_dssp CTTSSCEEEEETTSCEEEECTT-CCEE-------EEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEE
T ss_pred cCCCCEEEEEcCCCcEEEEccC-Cccc-------ccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceE
Confidence 9999999999999999999997 2211 111111111123455789999999999887532 3 2489
Q ss_pred EEEcCCc
Q 013578 380 WLSVETG 386 (440)
Q Consensus 380 i~d~~~~ 386 (440)
+|++...
T Consensus 273 i~~l~~~ 279 (434)
T 2oit_A 273 MALLPKK 279 (434)
T ss_dssp EEECCCT
T ss_pred EEEeccC
Confidence 9998765
No 142
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.90 E-value=5.1e-22 Score=175.87 Aligned_cols=251 Identities=14% Similarity=0.092 Sum_probs=173.2
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccc
Q 013578 96 GLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAIS 175 (440)
Q Consensus 96 ~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 175 (440)
++++++++.++++++.+++|.+||+.+++.. .....+....+..++|+|+++.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~----~~~~~~~~~~~~~~~~s~dg~~----------------------- 56 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVY----KSCVMPDKFGPGTAMMAPDNRT----------------------- 56 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEE----EEEECSSCCSSCEEEECTTSSE-----------------------
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEE----EEEecCCCCCCceeEECCCCCE-----------------------
Confidence 4578889999999999999999999876421 1111222125677888777653
Q ss_pred cccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCC------
Q 013578 176 TNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQ------ 249 (440)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~------ 249 (440)
+++++..++.|.+||+.+++.+..+....
T Consensus 57 ---------------------------------------------~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~ 91 (349)
T 1jmx_B 57 ---------------------------------------------AYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVG 91 (349)
T ss_dssp ---------------------------------------------EEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEE
T ss_pred ---------------------------------------------EEEEeCCCCcEEEEeCCCCcEEEEEEccccccccc
Confidence 34445567889999999998877776432
Q ss_pred CcccEEEecCCCCeEEEEecC------------CCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEE
Q 013578 250 LKNNMAAISPNGRFLAAAAFT------------ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA 317 (440)
Q Consensus 250 ~~v~~~~~s~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~ 317 (440)
..+..++|+|+|++|++++.+ +.|.+||+..++.. ..+..+. +...+.+++|+|+|+ ++.+
T Consensus 92 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-----~~~~~~~-~~~~~~~~~~s~dg~-l~~~ 164 (349)
T 1jmx_B 92 RSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA-----KPVRTFP-MPRQVYLMRAADDGS-LYVA 164 (349)
T ss_dssp ECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB-----CCSEEEE-CCSSCCCEEECTTSC-EEEE
T ss_pred ccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc-----ceeeecc-CCCcccceeECCCCc-EEEc
Confidence 237889999999999999865 89999998654311 1122233 334688999999999 6665
Q ss_pred eCCCcEEEEecCccccccCCCCcccc-----------------------c--ccccc-------------------CC-C
Q 013578 318 SKDGTLRVWNINVRYHLDEDPKTLKV-----------------------L--PIPLL-------------------DS-N 352 (440)
Q Consensus 318 ~~dg~i~iwd~~~~~~~~~~~~~~~~-----------------------~--~~~~~-------------------~~-~ 352 (440)
+. .|.+||+.++............ . ..... .. .
T Consensus 165 ~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 242 (349)
T 1jmx_B 165 GP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKT 242 (349)
T ss_dssp SS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTT
T ss_pred cC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccC
Confidence 44 4999999876543221110000 0 00000 00 0
Q ss_pred ---------CCeeeeeeEEeCC-CCCEEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEE
Q 013578 353 ---------GATLQYDRLSLSS-DGKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLAT 422 (440)
Q Consensus 353 ---------~~~~~v~~~~~s~-~g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t 422 (440)
.....+..++|+| +|++++++ ++.|++||+.+++.+..+. ....+.+++|+|++ ++|++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg--------~~l~~ 311 (349)
T 1jmx_B 243 GKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN--LDHTYYCVAFDKKG--------DKLYL 311 (349)
T ss_dssp CCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE--CSSCCCEEEECSSS--------SCEEE
T ss_pred CcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEc--CCCCccceEECCCC--------CEEEE
Confidence 0011345788899 99999988 8999999999998877764 34457899999998 77888
Q ss_pred eeCCCeEEEEeCCCCC
Q 013578 423 SSVDKKVKLWLAPSLE 438 (440)
Q Consensus 423 ~~~Dg~i~vw~~~~~~ 438 (440)
++.++.|++||+.+++
T Consensus 312 ~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 312 GGTFNDLAVFNPDTLE 327 (349)
T ss_dssp ESBSSEEEEEETTTTE
T ss_pred ecCCCeEEEEeccccc
Confidence 8889999999998764
No 143
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=9.2e-22 Score=174.07 Aligned_cols=259 Identities=15% Similarity=0.186 Sum_probs=163.8
Q ss_pred cccCcceeEEEEccCCCEEEEeeC---CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcce
Q 013578 88 KGHGDSVTGLCFSSDGKCLATACA---DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCS 164 (440)
Q Consensus 88 ~~H~~~V~~l~~s~dg~~l~t~s~---dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~ 164 (440)
..+...+..++|+|||+ |++++. ++.|.+|++.++... .+.....+...+..++|+|+++++++++
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~---~~~~~~~~~~~p~~~a~spdg~~l~~~~------- 104 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH---KLNTVVAPGTPPAYVAVDEARQLVYSAN------- 104 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE---EEEEEEEESCCCSEEEEETTTTEEEEEE-------
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE---EeeeeecCCCCCEEEEECCCCCEEEEEe-------
Confidence 45667888999999999 555544 689999999765422 2222223456788899988877544332
Q ss_pred EEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC-Cc--e
Q 013578 165 LYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT-GK--L 241 (440)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~--~ 241 (440)
..++.|.+|++.. +. .
T Consensus 105 -------------------------------------------------------------~~~~~v~v~~~~~~g~~~~ 123 (347)
T 3hfq_A 105 -------------------------------------------------------------YHKGTAEVMKIAADGALTL 123 (347)
T ss_dssp -------------------------------------------------------------TTTTEEEEEEECTTSCEEE
T ss_pred -------------------------------------------------------------CCCCEEEEEEeCCCCCeee
Confidence 2456677777742 22 2
Q ss_pred eeeeeC---------CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc-ccceEEEEEcCCC
Q 013578 242 LGNVDT---------NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH-KSAVTWLCFAPNS 311 (440)
Q Consensus 242 ~~~~~~---------~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~ 311 (440)
+..+.. ....+.+++|+|+|+++++...++.|.+|++... +... ....+..+ ...+..++|+|+|
T Consensus 124 ~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~--g~~~---~~~~~~~~~g~~p~~~~~spdg 198 (347)
T 3hfq_A 124 TDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA--GQLS---EQSVLTMEAGFGPRHLVFSPDG 198 (347)
T ss_dssp EEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT--SCEE---EEEEEECCTTCCEEEEEECTTS
T ss_pred cceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC--CcEE---EeeeEEcCCCCCCceEEECCCC
Confidence 222221 1224678999999996666666889999999722 1111 11222222 2357889999999
Q ss_pred CEEEE-EeCCCcEEEEecCc--cccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe--cCCEEEEEEcCCc
Q 013578 312 EQIIT-ASKDGTLRVWNINV--RYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT--HGSTLQWLSVETG 386 (440)
Q Consensus 312 ~~l~s-~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~--~~~~i~i~d~~~~ 386 (440)
++|++ ...++.|.+|++.. +... ........ .........+..++|+|||++|+++ .++.|.+|++...
T Consensus 199 ~~l~v~~~~~~~v~v~~~~~~~g~~~-----~~~~~~~~-~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~ 272 (347)
T 3hfq_A 199 QYAFLAGELSSQIASLKYDTQTGAFT-----QLGIVKTI-PADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD 272 (347)
T ss_dssp SEEEEEETTTTEEEEEEEETTTTEEE-----EEEEEESS-CTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred CEEEEEeCCCCEEEEEEecCCCCceE-----Eeeeeeec-CCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence 96665 55788999999874 2110 00000000 0001112346789999999977543 3799999999732
Q ss_pred ---cchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeC-CCeEEEEeC--CCCC
Q 013578 387 ---KVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSV-DKKVKLWLA--PSLE 438 (440)
Q Consensus 387 ---~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~-Dg~i~vw~~--~~~~ 438 (440)
+.+..+ ..+...+.+++|+|++ ++|++++. ++.|.+|++ .+++
T Consensus 273 g~~~~~~~~-~~~~~~~~~~~~spdg--------~~l~v~~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 273 GHLTLIQQI-STEGDFPRDFDLDPTE--------AFVVVVNQNTDNATLYARDLTSGK 321 (347)
T ss_dssp GCEEEEEEE-ECSSSCCCEEEECTTS--------SEEEEEETTTTEEEEEEECTTTCC
T ss_pred CcEEEeEEE-ecCCCCcCeEEECCCC--------CEEEEEEcCCCcEEEEEEeCCCCe
Confidence 333344 3456678999999998 77777765 589999954 4443
No 144
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=3.4e-22 Score=201.62 Aligned_cols=290 Identities=14% Similarity=0.026 Sum_probs=206.4
Q ss_pred cCcceeEEEEc-cCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCC-CCceEEEccCCCeEEEEeecCCcceEE-
Q 013578 90 HGDSVTGLCFS-SDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGG-PPTAVAFADNATSIVVATHNLSGCSLY- 166 (440)
Q Consensus 90 H~~~V~~l~~s-~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~~~~~l~~~~~~~~~~~~~- 166 (440)
|...|.+++|+ |||++|++++ ++.|.+|++..+.. .....+.. .+..++|+ +++.+++++.+ ..++
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~s-dg~~l~~~s~~---~~l~~ 362 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV------LKVPEPLRIRYVRRGGD-TKVAFIHGTRE---GDFLG 362 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBE------EECSCCSCEEEEEECSS-SEEEEEEEETT---EEEEE
T ss_pred cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCce------EEccCCCcceEEeeeEc-CCCeEEEEECC---CceEE
Confidence 55679999999 9999999988 78999999876531 12334445 78899999 99999988763 4566
Q ss_pred eeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeee
Q 013578 167 MYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD 246 (440)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 246 (440)
+++....... .. ..+.. ......++|+|+ .|++++.++.|++||+.+++....+.
T Consensus 363 ~~d~~~~~~~--------------~l---~~~~~-------~~~~~~~SpDG~-~la~~~~~~~v~~~d~~tg~~~~~~~ 417 (1045)
T 1k32_A 363 IYDYRTGKAE--------------KF---EENLG-------NVFAMGVDRNGK-FAVVANDRFEIMTVDLETGKPTVIER 417 (1045)
T ss_dssp EEETTTCCEE--------------EC---CCCCC-------SEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEECCCCCce--------------Ee---cCCcc-------ceeeeEECCCCC-EEEEECCCCeEEEEECCCCceEEecc
Confidence 6654432100 00 00101 112234589998 88888999999999999998887777
Q ss_pred CCCCcccEEEecCCCCeEEEEecCC----------CEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEE
Q 013578 247 TNQLKNNMAAISPNGRFLAAAAFTA----------DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT 316 (440)
Q Consensus 247 ~~~~~v~~~~~s~~~~~l~~~~~dg----------~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s 316 (440)
.+...+..++|+|||++|++++.++ .|++||+..+ ....+..|...+.+++|+|+|++|++
T Consensus 418 ~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g---------~~~~l~~~~~~~~~~~~spdG~~l~~ 488 (1045)
T 1k32_A 418 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR---------KIFAATTENSHDYAPAFDADSKNLYY 488 (1045)
T ss_dssp CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT---------EEEECSCSSSBEEEEEECTTSCEEEE
T ss_pred CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC---------cEEEeeCCCcccCCceEcCCCCEEEE
Confidence 8888899999999999999887654 8999998543 24556678888999999999999999
Q ss_pred EeCCCcEEEEecCccccccCCC----------Ccccc--------------c-----cccccCCCCCeeeeeeEEeCCCC
Q 013578 317 ASKDGTLRVWNINVRYHLDEDP----------KTLKV--------------L-----PIPLLDSNGATLQYDRLSLSSDG 367 (440)
Q Consensus 317 ~~~dg~i~iwd~~~~~~~~~~~----------~~~~~--------------~-----~~~~~~~~~~~~~v~~~~~s~~g 367 (440)
++.++..++|+........... ..... + .........+...+..++++|||
T Consensus 489 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg 568 (1045)
T 1k32_A 489 LSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESS 568 (1045)
T ss_dssp EESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSE
T ss_pred EecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCC
Confidence 9998888888865332210000 00000 0 00011112234557889999999
Q ss_pred CEEEE------------e--cCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578 368 KILAA------------T--HGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL 433 (440)
Q Consensus 368 ~~l~~------------~--~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~ 433 (440)
+++++ + ....|++||+.+++... + . ..+.+++|+||+ ++|++++.| .|++|+
T Consensus 569 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~-l-~---~~v~~~~~S~DG--------~~l~~~~~~-~i~~~d 634 (1045)
T 1k32_A 569 ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE-V-K---NNLTDLRLSADR--------KTVMVRKDD-GKIYTF 634 (1045)
T ss_dssp EEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE-E-E---EEEEEEEECTTS--------CEEEEEETT-SCEEEE
T ss_pred eEEEEecccCcccccccccCCCceEEEEECCCCcEEE-e-e---cCcceEEECCCC--------CEEEEEcCC-cEEEEe
Confidence 97775 1 14588999998887532 2 1 568899999999 889988866 799999
Q ss_pred CCCCC
Q 013578 434 APSLE 438 (440)
Q Consensus 434 ~~~~~ 438 (440)
+.+++
T Consensus 635 ~~~~~ 639 (1045)
T 1k32_A 635 PLEKP 639 (1045)
T ss_dssp ESSCT
T ss_pred CccCc
Confidence 98876
No 145
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=3.8e-21 Score=169.80 Aligned_cols=283 Identities=14% Similarity=0.159 Sum_probs=174.5
Q ss_pred cccCcceeEEEEccCCCEEEEeeCC-CcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEE
Q 013578 88 KGHGDSVTGLCFSSDGKCLATACAD-GVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLY 166 (440)
Q Consensus 88 ~~H~~~V~~l~~s~dg~~l~t~s~d-g~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~ 166 (440)
..|...+.+++|+|+|++|++++.+ +.|++|+++....... ....... ...+..++|+|+++++++++.. ...+.
T Consensus 34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~--~~~i~ 109 (343)
T 1ri6_A 34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT-FAAESAL-PGSLTHISTDHQGQFVFVGSYN--AGNVS 109 (343)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE-EEEEEEC-SSCCSEEEECTTSSEEEEEETT--TTEEE
T ss_pred EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCcee-ecccccc-CCCCcEEEEcCCCCEEEEEecC--CCeEE
Confidence 3577889999999999999998876 9999999983222211 1111112 2478999999999998887754 23456
Q ss_pred eeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC-Cceee--
Q 013578 167 MYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT-GKLLG-- 243 (440)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~-- 243 (440)
+|+...... ............+..+.++|+++.+++++..++.|++||+.+ ++...
T Consensus 110 ~~d~~~~~~---------------------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~ 168 (343)
T 1ri6_A 110 VTRLEDGLP---------------------VGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQD 168 (343)
T ss_dssp EEEEETTEE---------------------EEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEE
T ss_pred EEECCCCcc---------------------ccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeec
Confidence 665421100 000000111112344556899985555554889999999987 54432
Q ss_pred --eeeC-CCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeeeecc---ccceEEEEEcCCCCEEEE
Q 013578 244 --NVDT-NQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQLKGH---KSAVTWLCFAPNSEQIIT 316 (440)
Q Consensus 244 --~~~~-~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~~p~~~~l~s 316 (440)
.+.. ....+..++|+|+++++++++ .++.|.+|++.... +..........+... ...+.+++|+|++++|+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v 247 (343)
T 1ri6_A 169 PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH-GNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYA 247 (343)
T ss_dssp EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTT-SCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEE
T ss_pred ccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCC-CcEEEEeeccccCccccccCCccceEECCCCCEEEE
Confidence 2222 234677899999999776665 78999999985422 111111112212211 345778999999988774
Q ss_pred -EeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEE--cCCccc--h
Q 013578 317 -ASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLS--VETGKV--L 389 (440)
Q Consensus 317 -~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d--~~~~~~--~ 389 (440)
+..++.|.+||+..... ...... ... .+. .+..++|+|+|++|+++. ++.+.+|+ ..+++. +
T Consensus 248 ~~~~~~~i~v~d~~~~~~------~~~~~~--~~~--~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 316 (343)
T 1ri6_A 248 CDRTASLITVFSVSEDGS------VLSKEG--FQP--TET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEK 316 (343)
T ss_dssp EETTTTEEEEEEECTTSC------CEEEEE--EEE--CSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEE
T ss_pred EecCCCEEEEEEEcCCCC------ceEEee--eec--CCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEc
Confidence 45789999999973110 000000 000 111 166899999999887765 68999994 446643 3
Q ss_pred hhhhccccCCeEEEEecCCC
Q 013578 390 DTAEKAHEGEITCMAWAPKT 409 (440)
Q Consensus 390 ~~~~~~h~~~v~~v~~~~~~ 409 (440)
..+. ......+++|.++.
T Consensus 317 ~~~~--~g~~p~~i~~~~~~ 334 (343)
T 1ri6_A 317 GRYA--VGQGPMWVVVNAHE 334 (343)
T ss_dssp EEEE--CSSSCCEEEEEEEC
T ss_pred cccc--cCCCCeeEEEEccc
Confidence 3332 23457778887764
No 146
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=2.7e-21 Score=166.93 Aligned_cols=226 Identities=11% Similarity=0.078 Sum_probs=161.5
Q ss_pred EeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCC
Q 013578 108 TACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPG 187 (440)
Q Consensus 108 t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (440)
+++.|++|++||+.++... ....+...+.+++|+|+++++
T Consensus 17 ~~~~~~~i~~~d~~~~~~~------~~~~~~~~v~~~~~spdg~~l---------------------------------- 56 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR------VVWQTPELFEAPNWSPDGKYL---------------------------------- 56 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE------EEEEESSCCEEEEECTTSSEE----------------------------------
T ss_pred CCCcceeEEEEeCCCCcee------eeccCCcceEeeEECCCCCEE----------------------------------
Confidence 4568899999999876422 222356789999999987743
Q ss_pred CceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC-CceeeeeeCC-CCcccEEEecCCCCeEE
Q 013578 188 PEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT-GKLLGNVDTN-QLKNNMAAISPNGRFLA 265 (440)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~-~~~v~~~~~s~~~~~l~ 265 (440)
++++ ++.|++||+.+ ++.......+ ...+.+++|+|++++|+
T Consensus 57 -----------------------------------~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 100 (297)
T 2ojh_A 57 -----------------------------------LLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYA 100 (297)
T ss_dssp -----------------------------------EEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEE
T ss_pred -----------------------------------EEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEE
Confidence 3333 56799999998 7776666554 36788999999999999
Q ss_pred EEe--cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEE-EEeCCCcEEEEecCccccccCCCCccc
Q 013578 266 AAA--FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII-TASKDGTLRVWNINVRYHLDEDPKTLK 342 (440)
Q Consensus 266 ~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~ 342 (440)
+++ .++...||.+..... ....+..+ ..+..++|+|++++|+ +++.|+.+++|+++.... ..
T Consensus 101 ~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~------~~- 165 (297)
T 2ojh_A 101 ISDKVEFGKSAIYLLPSTGG-------TPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG------VE- 165 (297)
T ss_dssp EEECTTTSSCEEEEEETTCC-------CCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC------CE-
T ss_pred EEEeCCCCcceEEEEECCCC-------ceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCC------cc-
Confidence 998 446788887754321 12233333 3488999999999877 778899999999753210 00
Q ss_pred cccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcC-CccchhhhhccccCCeEEEEecCCCCCCCCCcceE
Q 013578 343 VLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSVE-TGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSV 419 (440)
Q Consensus 343 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~ 419 (440)
.....+...+..++|+|+|++|+.+. ++.+++|++. .+..+..+ ..|...+.+++|+|++ ++
T Consensus 166 ------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~s~dg--------~~ 230 (297)
T 2ojh_A 166 ------TRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI-TDSAYGDWFPHPSPSG--------DK 230 (297)
T ss_dssp ------EECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC-CCCSEEEEEEEECTTS--------SE
T ss_pred ------eEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE-ecCCcccCCeEECCCC--------CE
Confidence 01112334578899999999877643 7888888875 44455555 4677889999999998 78
Q ss_pred EEEeeCC-----------CeEEEEeCCCCCC
Q 013578 420 LATSSVD-----------KKVKLWLAPSLES 439 (440)
Q Consensus 420 l~t~~~D-----------g~i~vw~~~~~~~ 439 (440)
|++++.+ +.|++|++.+++.
T Consensus 231 l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 231 VVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp EEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred EEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 8888766 5699999987653
No 147
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.89 E-value=9.6e-22 Score=191.95 Aligned_cols=292 Identities=11% Similarity=0.083 Sum_probs=188.2
Q ss_pred cceeEEEEccCCCEEEEeeCCCcEEEEecCCC---CCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEee
Q 013578 92 DSVTGLCFSSDGKCLATACADGVIRVHKLDDA---SSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMY 168 (440)
Q Consensus 92 ~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~---~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~ 168 (440)
..|.+++|||||++|++++. +.|++||+.++ ... ....+...+..++|+|||++|++++.+ .+++|
T Consensus 109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~------~l~~~~~~~~~~~~SPDG~~la~~~~~----~i~~~ 177 (741)
T 2ecf_A 109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR------QLTHGEGFATDAKLSPKGGFVSFIRGR----NLWVI 177 (741)
T ss_dssp EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCC------BCCCSSSCEEEEEECTTSSEEEEEETT----EEEEE
T ss_pred cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEE------EcccCCcccccccCCCCCCEEEEEeCC----cEEEE
Confidence 34899999999999999986 89999999876 321 233455778999999999999988743 67888
Q ss_pred ccccccccccccccCC-CCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCc------------------
Q 013578 169 GEEKAISTNEGKQQSK-LPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGT------------------ 229 (440)
Q Consensus 169 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~------------------ 229 (440)
+............... .......|-.... ........++|||+ .|+.++.|+
T Consensus 178 d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~--------~~~~~~~~~SpDg~-~l~~~~~d~~~~~~~~~~~~~p~~~~~ 248 (741)
T 2ecf_A 178 DLASGRQMQLTADGSTTIGNGIAEFVADEE--------MDRHTGYWWAPDDS-AIAYARIDESPVPVQKRYEVYADRTDV 248 (741)
T ss_dssp ETTTTEEEECCCCCCSSEEESCCCHHHHHH--------SCCCCSEEECTTSS-CEEEEEEECTTSCEEEEEEECSSCEEE
T ss_pred ecCCCCEEEeccCCccceeccccceeeeec--------cccccceEECCCCC-EEEEEEEcCCCCceEecCCCCCCcccc
Confidence 7654321100000000 0000000000000 00123456689999 555555443
Q ss_pred ---------------eEEEEeCCC-Cceeeeee--CCCCcccEEEecCCCCeEEEEec-----CCCEEEEEeEecCCCce
Q 013578 230 ---------------DISIWHGKT-GKLLGNVD--TNQLKNNMAAISPNGRFLAAAAF-----TADVKVWEIVYSKDGLV 286 (440)
Q Consensus 230 ---------------~i~vwd~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~ 286 (440)
.|++||+.+ ++...... .+...+..++| |||++|++++. +..|++||+..+.
T Consensus 249 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~---- 323 (741)
T 2ecf_A 249 IEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ---- 323 (741)
T ss_dssp EEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC----
T ss_pred eEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc----
Confidence 789999988 77654332 35667889999 99999998764 4678999976543
Q ss_pred eeeeeeeeeecccc----ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeE-
Q 013578 287 KAVTSVMQLKGHKS----AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRL- 361 (440)
Q Consensus 287 ~~~~~~~~~~~h~~----~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~- 361 (440)
....+..+.. .+.+++|+|||+++++++.||.++||.+.... . ... ...+...+..+
T Consensus 324 ----~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~------~-~~~-------l~~~~~~v~~~~ 385 (741)
T 2ecf_A 324 ----QRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKG------K-AAA-------LTHGNWSVDELL 385 (741)
T ss_dssp ----EEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSS------C-EEE-------SCCSSSCEEEEE
T ss_pred ----eEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCC------C-eee-------eeecceEEEeEe
Confidence 2233333332 45689999999999999999988888775211 0 111 11223345566
Q ss_pred EeCCCCCEEEE-ec-CC--EEEEEEcCC-ccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCC----CeEEEE
Q 013578 362 SLSSDGKILAA-TH-GS--TLQWLSVET-GKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD----KKVKLW 432 (440)
Q Consensus 362 ~~s~~g~~l~~-~~-~~--~i~i~d~~~-~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D----g~i~vw 432 (440)
.|+|+|+.|+. +. ++ .+++|++.. +.....+. +...+..++|+|++ ++|+....+ ..+.+|
T Consensus 386 ~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~--~~~~~~~~~~spdg--------~~l~~~~~~~~~p~~~~l~ 455 (741)
T 2ecf_A 386 AVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS--KAPGMHSASFARNA--------SVYVDSWSNNSTPPQIELF 455 (741)
T ss_dssp EEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC--CSCSEEEEEECTTS--------SEEEEEEEETTEEEEEEEE
T ss_pred EEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc--cCCCceEEEECCCC--------CEEEEEecCCCCCCeEEEE
Confidence 69999997764 44 34 889999864 55555553 36678999999998 666654433 468888
Q ss_pred eCCC
Q 013578 433 LAPS 436 (440)
Q Consensus 433 ~~~~ 436 (440)
+...
T Consensus 456 ~~~~ 459 (741)
T 2ecf_A 456 RANG 459 (741)
T ss_dssp ETTS
T ss_pred EcCC
Confidence 8653
No 148
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.88 E-value=7.6e-21 Score=172.23 Aligned_cols=166 Identities=14% Similarity=0.162 Sum_probs=128.3
Q ss_pred ccCcceeEEEEccCCCEEE----EeeCCCcEEEEecCCC-----CC-cceeeEEecCCCCCCCceEEEccCCCeEEEEee
Q 013578 89 GHGDSVTGLCFSSDGKCLA----TACADGVIRVHKLDDA-----SS-KSFKFLRINLPPGGPPTAVAFADNATSIVVATH 158 (440)
Q Consensus 89 ~H~~~V~~l~~s~dg~~l~----t~s~dg~v~vW~~~~~-----~~-~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~ 158 (440)
.|.+.|++++|+|+|++|+ +|+.|++|+|||+.+. .. ..........+|...|.+++|+|+..
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~------- 162 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVP------- 162 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCT-------
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCC-------
Confidence 3567899999999999999 8999999999998754 11 11223445556778899999988621
Q ss_pred cCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC
Q 013578 159 NLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT 238 (440)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 238 (440)
. ++++++.|++|++||+++
T Consensus 163 ------------------------------------------------------------~-~las~s~Dg~v~iwD~~~ 181 (434)
T 2oit_A 163 ------------------------------------------------------------S-MVAVCLADGSIAVLQVTE 181 (434)
T ss_dssp ------------------------------------------------------------T-EEEEEETTSCEEEEEESS
T ss_pred ------------------------------------------------------------C-EEEEEECCCeEEEEEcCC
Confidence 1 788899999999999999
Q ss_pred CceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee-------ccccceEEEEEcCCC
Q 013578 239 GKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK-------GHKSAVTWLCFAPNS 311 (440)
Q Consensus 239 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~p~~ 311 (440)
+..+.....|...+.+++|+|+|++|++|+.||.|++||++ +. ....+. .|...|.+++|++++
T Consensus 182 ~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~--------~~~~~~~~~~~~~~~~~~v~~v~w~~~~ 252 (434)
T 2oit_A 182 TVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ--------EKKVIPCPPFYESDHPVRVLDVLWIGTY 252 (434)
T ss_dssp SEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CC--------EEEEECCCTTCCTTSCEEEEEEEEEETT
T ss_pred CcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc--------ccccccCCcccCCCCceeEEEEEEecCc
Confidence 87776667788899999999999999999999999999986 22 112222 234489999999988
Q ss_pred CEEEEE-eCCCc------EEEEecCcc
Q 013578 312 EQIITA-SKDGT------LRVWNINVR 331 (440)
Q Consensus 312 ~~l~s~-~~dg~------i~iwd~~~~ 331 (440)
.++++. +.||. +++|+++..
T Consensus 253 ~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 253 VFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred eEEEEEccCCCccCCCCceEEEEeccC
Confidence 877543 34433 899999854
No 149
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.88 E-value=2e-20 Score=165.94 Aligned_cols=247 Identities=15% Similarity=0.123 Sum_probs=178.0
Q ss_pred CCCceEEEccCCCeEEEEeecCC----cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeeccccccc
Q 013578 139 GPPTAVAFADNATSIVVATHNLS----GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYG 214 (440)
Q Consensus 139 ~~v~~v~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (440)
..+..++|+|+++++++++.++. ...+++|+...... ...+.....+..+.+
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~------------------------~~~~~~~~~~~~~~~ 96 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV------------------------TQAIHNDLKPFGATI 96 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE------------------------EEEEEESSCCCSEEE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE------------------------EEEEecCCCcceEEE
Confidence 56788999999999988875532 35677776544311 111111122344556
Q ss_pred CCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCc---------ccEEEecCCCCeEEEEe--cCCCEEEEEeEecCC
Q 013578 215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLK---------NNMAAISPNGRFLAAAA--FTADVKVWEIVYSKD 283 (440)
Q Consensus 215 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~---------v~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~ 283 (440)
+++|+.+++++..++.|.+||..+++.+..+..+... +..++|+|+++++++++ .++.|.+||+...+
T Consensus 97 s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~- 175 (353)
T 3vgz_A 97 NNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK- 175 (353)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE-
T ss_pred CCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc-
Confidence 8899877777788899999999999988887764322 57899999999888876 47889999986543
Q ss_pred CceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe
Q 013578 284 GLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL 363 (440)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 363 (440)
....+..+...+.+++|+|++++|++++.++.|.+||+.++..... +. ....++...+..++|
T Consensus 176 -------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~-------~~---~~~~~~~~~~~~~~~ 238 (353)
T 3vgz_A 176 -------LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSR-------KK---LLDDGKEHFFINISL 238 (353)
T ss_dssp -------EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEE-------EE---CCCSSSCCCEEEEEE
T ss_pred -------eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEE-------EE---cCCCCCCcccceEEE
Confidence 3444544555688999999999999999999999999987654321 11 011122334677999
Q ss_pred CCCCCEEEEec--CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcce-EEEEeeCCCeEEEEeCCCCC
Q 013578 364 SSDGKILAATH--GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVS-VLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 364 s~~g~~l~~~~--~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~-~l~t~~~Dg~i~vw~~~~~~ 438 (440)
+|+|++++++. ++.|.+||..+++.+..+.. +. ...++|+|++ + ++++...++.|.+||+.+++
T Consensus 239 s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~--~~~~~~s~dg--------~~l~v~~~~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 239 DTARQRAFITDSKAAEVLVVDTRNGNILAKVAA-PE--SLAVLFNPAR--------NEAYVTHRQAGKVSVIDAKSYK 305 (353)
T ss_dssp ETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC-SS--CCCEEEETTT--------TEEEEEETTTTEEEEEETTTTE
T ss_pred CCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc-CC--CceEEECCCC--------CEEEEEECCCCeEEEEECCCCe
Confidence 99999776654 58999999999998877642 22 3679999998 5 45555579999999998764
No 150
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.88 E-value=3.1e-20 Score=180.81 Aligned_cols=296 Identities=8% Similarity=0.020 Sum_probs=181.8
Q ss_pred CCCCCcccCccc----cccccccCc---ceeEEEEccCCCEEEEeeCC---------CcEEEEecCCCCCcceeeEEecC
Q 013578 72 DKDQNKRHHPLD----VNTLKGHGD---SVTGLCFSSDGKCLATACAD---------GVIRVHKLDDASSKSFKFLRINL 135 (440)
Q Consensus 72 ~~~~~~~~~~~~----~~~l~~H~~---~V~~l~~s~dg~~l~t~s~d---------g~v~vW~~~~~~~~~~~~~~~~~ 135 (440)
+.++..+.|+.. ...+.+|.. .|.+++|||||++|++++.+ +.+.+||+.++... .+....
T Consensus 34 ~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~l~~~~ 110 (723)
T 1xfd_A 34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ---SLDPPE 110 (723)
T ss_dssp CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE---ECCCTT
T ss_pred eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE---eccCCc
Confidence 456677777542 345556654 49999999999999999875 77889999877531 122223
Q ss_pred CCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEee--------
Q 013578 136 PPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLF-------- 207 (440)
Q Consensus 136 ~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 207 (440)
.+...+..++|+|||+.|+.++. ..+++|+............. ..........
T Consensus 111 ~~~~~~~~~~~SPdG~~la~~~~----~~i~~~~~~~g~~~~~~~~~---------------~~~~~~~g~~~~v~~ee~ 171 (723)
T 1xfd_A 111 VSNAKLQYAGWGPKGQQLIFIFE----NNIYYCAHVGKQAIRVVSTG---------------KEGVIYNGLSDWLYEEEI 171 (723)
T ss_dssp CCSCCCSBCCBCSSTTCEEEEET----TEEEEESSSSSCCEEEECCC---------------BTTTEEEEECCHHHHHTT
T ss_pred cccccccccEECCCCCEEEEEEC----CeEEEEECCCCceEEEecCC---------------CCCceECcccceeEEEEe
Confidence 34445899999999999999875 36888876543211000000 0000000000
Q ss_pred --cccccccCCCCCeEEEEeeCC----------------------------------ceEEEEeCCCCceeeeeeCC---
Q 013578 208 --GASATYGTADGSTIIASCSEG----------------------------------TDISIWHGKTGKLLGNVDTN--- 248 (440)
Q Consensus 208 --~~~~~~~~~~~~~~l~s~~~d----------------------------------~~i~vwd~~~~~~~~~~~~~--- 248 (440)
......++|||+ .|+.++.+ ..|++||+.+++....+..+
T Consensus 172 ~~~~~~~~~SpDg~-~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~ 250 (723)
T 1xfd_A 172 LKTHIAHWWSPDGT-RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDP 250 (723)
T ss_dssp SSSSEEEEECTTSS-EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCG
T ss_pred ccCcceEEECCCCC-EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccC
Confidence 012355689998 55555433 27999999988765555543
Q ss_pred ---CCcccEEEecCCCCeEEEEecC----CCEEEEEeEecCCCceeeeeeeeeeec-cccceE----EEEEcCCCCEEEE
Q 013578 249 ---QLKNNMAAISPNGRFLAAAAFT----ADVKVWEIVYSKDGLVKAVTSVMQLKG-HKSAVT----WLCFAPNSEQIIT 316 (440)
Q Consensus 249 ---~~~v~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~-h~~~v~----~~~~~p~~~~l~s 316 (440)
...+..++|+|||++|++.... ..|++||+..++ ....+.. +...+. .++|+|||+.|+.
T Consensus 251 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~--------~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 322 (723)
T 1xfd_A 251 RMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV--------CTKKHEDESEAWLHRQNEEPVFSKDGRKFFF 322 (723)
T ss_dssp GGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC--------EEEEEEEECSSCCCCCCCCCEECTTSCSEEE
T ss_pred CCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc--------ceEEEEeccCCEEeccCCCceEcCCCCeEEE
Confidence 5567889999999998777543 468899975543 2222222 334443 7899999997775
Q ss_pred --EeCCC------cEEEEec-CccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cC---CEEEEEEc
Q 013578 317 --ASKDG------TLRVWNI-NVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HG---STLQWLSV 383 (440)
Q Consensus 317 --~~~dg------~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~---~~i~i~d~ 383 (440)
+..++ .|.+||+ .++.. .....+ . .++......++|+|||+.|+.. .+ +.+++|++
T Consensus 323 ~~~~~~~~~~~~~~l~~~d~~~~~~~-----~~~~~l-----~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 391 (723)
T 1xfd_A 323 IRAIPQGGRGKFYHITVSSSQPNSSN-----DNIQSI-----T-SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSA 391 (723)
T ss_dssp EEEECCSSSSCEEEEEEECSSCCSSS-----CCCCBS-----C-CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEE
T ss_pred EEecccCCCcceeEEEEEeccCCCCc-----cceeEe-----e-cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEE
Confidence 44666 4666773 32210 000111 0 1111112236999999988754 33 78899988
Q ss_pred CCcc--chhhhhcc--ccCCeEEEEecCCC
Q 013578 384 ETGK--VLDTAEKA--HEGEITCMAWAPKT 409 (440)
Q Consensus 384 ~~~~--~~~~~~~~--h~~~v~~v~~~~~~ 409 (440)
.... ....+... |...+..++|+|++
T Consensus 392 ~~~~~~~~~~l~~~~~~~~~~~~~~~spdg 421 (723)
T 1xfd_A 392 NTVGNFNRQCLSCDLVENCTYFSASFSHSM 421 (723)
T ss_dssp CSSTTCCCBCSSTTSSSSCCCCEEEECTTS
T ss_pred eCCCCCCcceecccccCCCCeEEEEECCCC
Confidence 6432 33333211 67779999999998
No 151
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=3.4e-20 Score=162.83 Aligned_cols=264 Identities=11% Similarity=0.060 Sum_probs=165.4
Q ss_pred ccccccCcceeEEEEccCCCEEEEeeC-CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578 85 NTLKGHGDSVTGLCFSSDGKCLATACA-DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC 163 (440)
Q Consensus 85 ~~l~~H~~~V~~l~~s~dg~~l~t~s~-dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~ 163 (440)
..+..+...+ +++|+|||++|++++. ++.|.+||+.++... ......+..+..+++|+|+++++++...++...
T Consensus 34 ~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~----~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 108 (331)
T 3u4y_A 34 NQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK----VVAIQEGQSSMADVDITPDDQFAVTVTGLNHPF 108 (331)
T ss_dssp EEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE----EEEEEECSSCCCCEEECTTSSEEEECCCSSSSC
T ss_pred eeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee----EEecccCCCCccceEECCCCCEEEEecCCCCcc
Confidence 3444556667 9999999997776665 899999999876531 122222334444499999999999433332222
Q ss_pred eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCce-EEEEeCCCCcee
Q 013578 164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTD-ISIWHGKTGKLL 242 (440)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~-i~vwd~~~~~~~ 242 (440)
.+.+|+........ .+.....+..+.++|+|+.+++++..++. |.+|++.....+
T Consensus 109 ~i~v~d~~~~~~~~------------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~ 164 (331)
T 3u4y_A 109 NMQSYSFLKNKFIS------------------------TIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVL 164 (331)
T ss_dssp EEEEEETTTTEEEE------------------------EEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCE
T ss_pred cEEEEECCCCCeEE------------------------EEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcE
Confidence 67777764432110 01111122345568999867777777788 999998754432
Q ss_pred e----eeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEE
Q 013578 243 G----NVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA 317 (440)
Q Consensus 243 ~----~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~ 317 (440)
. ...........++|+|+|+++++++ .++.|++||+..++. ...+..+. ....+.+++|+|+|++|+.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~-----~~~~~~~~-~~~~~~~~~~spdg~~l~v~ 238 (331)
T 3u4y_A 165 FDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN-----ITLLNAVG-TNNLPGTIVVSRDGSTVYVL 238 (331)
T ss_dssp EEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS-----CEEEEEEE-CSSCCCCEEECTTSSEEEEE
T ss_pred eecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc-----cceeeecc-CCCCCceEEECCCCCEEEEE
Confidence 1 1112344578899999999766655 588999999875541 00133444 33667899999999977665
Q ss_pred e-CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-c-CCEEEEEEcCCccc
Q 013578 318 S-KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-H-GSTLQWLSVETGKV 388 (440)
Q Consensus 318 ~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~-~~~i~i~d~~~~~~ 388 (440)
+ .++.|.+||+.++.... ...+................++|+|||++|+++ . ++.|.+||+.....
T Consensus 239 ~~~~~~i~~~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 239 TESTVDVFNFNQLSGTLSF-----VKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp CSSEEEEEEEETTTTEEEE-----EEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred EcCCCEEEEEECCCCceee-----ecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 4 57789999998765410 000000000000111112468999999987654 3 67999999987654
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=3.8e-19 Score=158.16 Aligned_cols=287 Identities=12% Similarity=0.148 Sum_probs=174.5
Q ss_pred cCcceeEEEEccCCCEEEEeeCC----CcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceE
Q 013578 90 HGDSVTGLCFSSDGKCLATACAD----GVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSL 165 (440)
Q Consensus 90 H~~~V~~l~~s~dg~~l~t~s~d----g~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~ 165 (440)
|...+..++|+|||++|++++.+ +.|.+|+++...... ..+.....+...+..+++ ++++++++... ...+
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~-~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~--~~~v 122 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL-HLLNTQKTMGADPCYLTT--NGKNIVTANYS--GGSI 122 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE-EEEEEEECSSSCEEEEEE--CSSEEEEEETT--TTEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE-EEeeEeccCCCCcEEEEE--CCCEEEEEECC--CCEE
Confidence 67788899999999999999886 799999997642221 122222223455677777 88888887654 3455
Q ss_pred EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce----
Q 013578 166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL---- 241 (440)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~---- 241 (440)
.+|+.................... ....... ...+..+.++|+|+.+++++..++.|++|++.....
T Consensus 123 ~~~~~~~~g~~~~~~~~~~~~g~~--~~~~~~~-------~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~ 193 (361)
T 3scy_A 123 TVFPIGQDGALLPASDVIEFKGSG--PDKERQT-------MPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNK 193 (361)
T ss_dssp EEEEBCTTSCBCSCSEEEECCCCC--SCTTTCS-------SCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTC
T ss_pred EEEEeCCCCcCcccceeEEccCCC--CCccccC-------CCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccc
Confidence 566543221110000000000000 0000000 001123456899996667776788999998775431
Q ss_pred --e-------eeeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCC
Q 013578 242 --L-------GNVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS 311 (440)
Q Consensus 242 --~-------~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 311 (440)
+ ............++|+|+|+++++++ .++.|.+|++..+. ......+.....+.....+++|+|+|
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~---~~~~~~~~~~~~~~~~~~~i~~spdg 270 (361)
T 3scy_A 194 EKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM---LDEIQTVAADTVNAQGSGDIHLSPDG 270 (361)
T ss_dssp CCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTE---EEEEEEEESCSSCCCCEEEEEECTTS
T ss_pred cceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc---eEEeEEEecCCCCCCCcccEEECCCC
Confidence 1 11122344567899999999888887 58999999997332 12222222333344557899999999
Q ss_pred CEEEEEeCC--CcEEEEecCc--cccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEE--Ec
Q 013578 312 EQIITASKD--GTLRVWNINV--RYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWL--SV 383 (440)
Q Consensus 312 ~~l~s~~~d--g~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~--d~ 383 (440)
++|+++..+ +.|.+|++.. +.. .....+ . . ...+..++|+|||++|+++. ++.|.+| |.
T Consensus 271 ~~l~v~~~~~~~~i~v~~~~~~~g~~-----~~~~~~--~---~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 271 KYLYASNRLKADGVAIFKVDETNGTL-----TKVGYQ--L---T---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp SEEEEEECSSSCEEEEEEECTTTCCE-----EEEEEE--E---C---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred CEEEEECCCCCCEEEEEEEcCCCCcE-----EEeeEe--c---C---CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 998776654 8999999962 210 000000 0 0 12356799999999888764 6889995 55
Q ss_pred CCccchhhhhccccCCeEEEEec
Q 013578 384 ETGKVLDTAEKAHEGEITCMAWA 406 (440)
Q Consensus 384 ~~~~~~~~~~~~h~~~v~~v~~~ 406 (440)
.+++........+...+.|+.|.
T Consensus 338 ~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 338 ATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp TTCCEEECSCCEECSSEEEEEEE
T ss_pred CCCcEeecceeeeCCCCeEEEEc
Confidence 67776554433456689999886
No 153
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=1.1e-20 Score=183.55 Aligned_cols=285 Identities=14% Similarity=0.110 Sum_probs=179.5
Q ss_pred ceeEEEEccCCCEEEEeeCCCcEEEEecCCCCC--cceeeEEec-------------CCCCCCCceEEEccCCCeEEEEe
Q 013578 93 SVTGLCFSSDGKCLATACADGVIRVHKLDDASS--KSFKFLRIN-------------LPPGGPPTAVAFADNATSIVVAT 157 (440)
Q Consensus 93 ~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~--~~~~~~~~~-------------~~~~~~v~~v~~~~~~~~l~~~~ 157 (440)
.+..+.|+ |+.+++++.|+ | +||+.+++. .. +.... ..+...+.+++|+|+ +.++.+.
T Consensus 27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~--l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~ 99 (706)
T 2z3z_A 27 YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT--RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT 99 (706)
T ss_dssp -CTTCEEE--TTEEEEEETTE-E-EEEC-------CE--EEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE
T ss_pred cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE--eechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE
Confidence 35667888 66777888888 8 999988764 21 11110 001256999999999 7666664
Q ss_pred ecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCC
Q 013578 158 HNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK 237 (440)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~ 237 (440)
. ..+++|+........ ............++|||+ .++.+ .++.|++||+.
T Consensus 100 ~----~~i~~~d~~~~~~~~------------------------l~~~~~~~~~~~~SpdG~-~la~~-~~~~i~v~~~~ 149 (706)
T 2z3z_A 100 Q----GGLVGFDMLARKVTY------------------------LFDTNEETASLDFSPVGD-RVAYV-RNHNLYIARGG 149 (706)
T ss_dssp T----TEEEEEETTTTEEEE------------------------EECCTTCCTTCEECTTSS-EEEEE-ETTEEEEEECB
T ss_pred C----CEEEEEECCCCceEE------------------------ccCCcccccCCcCCCCCC-EEEEE-ECCeEEEEecC
Confidence 3 577777764431100 000001123455689999 55554 67899999999
Q ss_pred C-----CceeeeeeCCCCc--------------ccEEEecCCCCeEEEEe------------------------------
Q 013578 238 T-----GKLLGNVDTNQLK--------------NNMAAISPNGRFLAAAA------------------------------ 268 (440)
Q Consensus 238 ~-----~~~~~~~~~~~~~--------------v~~~~~s~~~~~l~~~~------------------------------ 268 (440)
+ ++.......+... +.+++|+|||++|++++
T Consensus 150 ~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g 229 (706)
T 2z3z_A 150 KLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAG 229 (706)
T ss_dssp CTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTT
T ss_pred cccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCC
Confidence 8 7766544433332 47899999999999987
Q ss_pred ---cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC-----cEEEEecCccccccCCCCc
Q 013578 269 ---FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG-----TLRVWNINVRYHLDEDPKT 340 (440)
Q Consensus 269 ---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~ 340 (440)
.+..|++||+..+. ...+.....|...+.+++|+|||++|++++.|+ .|++||+.++.....
T Consensus 230 ~~~~~~~l~~~d~~~~~------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~---- 299 (706)
T 2z3z_A 230 TPSHHVTVGIYHLATGK------TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRT---- 299 (706)
T ss_dssp SCCCEEEEEEEETTTTE------EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEE----
T ss_pred CCCCeeEEEEEECCCCc------eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeE----
Confidence 34668899885432 011111224677899999999999999988776 899999987622110
Q ss_pred cccccccccCCCCCeeeeeeEEeCC--CCCEEEEec-CCEEEEEEcC-CccchhhhhccccCCeEE-EEecCCCCCCCCC
Q 013578 341 LKVLPIPLLDSNGATLQYDRLSLSS--DGKILAATH-GSTLQWLSVE-TGKVLDTAEKAHEGEITC-MAWAPKTIPMGNQ 415 (440)
Q Consensus 341 ~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~-~~~i~i~d~~-~~~~~~~~~~~h~~~v~~-v~~~~~~~~~~~~ 415 (440)
+. ..........+..++|+| ||++++++. ++.+++|.+. +++.+..+ ..|...+.. ++|+|++
T Consensus 300 ---~~--~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l-~~~~~~v~~~~~~spdg------ 367 (706)
T 2z3z_A 300 ---LF--VETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV-TKGEWEVTNFAGFDPKG------ 367 (706)
T ss_dssp ---EE--EEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEEC-CCSSSCEEEEEEECTTS------
T ss_pred ---EE--EccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEec-CCCCeEEEeeeEEcCCC------
Confidence 00 000001111235689999 999888875 6778888775 56666666 467777877 7999998
Q ss_pred cceEEEE-eeCCC----eEEEEeCCCCC
Q 013578 416 QVSVLAT-SSVDK----KVKLWLAPSLE 438 (440)
Q Consensus 416 ~~~~l~t-~~~Dg----~i~vw~~~~~~ 438 (440)
+.|+. ++.++ .|..|++.+++
T Consensus 368 --~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 368 --TRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp --SEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred --CEEEEEecCCCCceEEEEEEEcCCCC
Confidence 55554 44444 67777776654
No 154
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.87 E-value=7.1e-19 Score=156.40 Aligned_cols=288 Identities=12% Similarity=0.132 Sum_probs=175.2
Q ss_pred EEEEeeCC--CcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccc-cccccccccc
Q 013578 105 CLATACAD--GVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEE-KAISTNEGKQ 181 (440)
Q Consensus 105 ~l~t~s~d--g~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 181 (440)
+|+.|+.. +.|.+|+++...................+..++|+|+++++++++.+ .+.+|+.. ......
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~----~v~~~~~~~~g~~~~---- 75 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK----KWSSFAVKSPTEIVH---- 75 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT----EEEEEEEEETTEEEE----
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc----eEEEEEECCCCCEEE----
Confidence 35556543 56888877543322111111112233578899999999998887765 56666543 110000
Q ss_pred cCCCCCCceeecccccccceeEEEeecccccccCCCCCe-EEEEee-------------CCceEEEEeCC-CCceeeeee
Q 013578 182 QSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGST-IIASCS-------------EGTDISIWHGK-TGKLLGNVD 246 (440)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~-------------~d~~i~vwd~~-~~~~~~~~~ 246 (440)
... ......+..+.++|+|+. +++++. .++.+.+|++. +++....+.
T Consensus 76 ---------~~~---------~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~ 137 (365)
T 1jof_A 76 ---------EAS---------HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQ 137 (365)
T ss_dssp ---------EEE---------EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEE
T ss_pred ---------eeE---------eecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEe
Confidence 000 000011334567889985 344553 68899999997 466544433
Q ss_pred ----CCCCcccEEEecCCCCeEEEEec-CCCEEEEEeE-ecCCCceeeeeeeeeee--ccccceEEEEEcCCCCEEEEEe
Q 013578 247 ----TNQLKNNMAAISPNGRFLAAAAF-TADVKVWEIV-YSKDGLVKAVTSVMQLK--GHKSAVTWLCFAPNSEQIITAS 318 (440)
Q Consensus 247 ----~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~-~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~l~s~~ 318 (440)
.+...+.+++|+|+|++|++++. ++.|++||+. .++ .. .+..+. .|...+..++|+|+|++|++++
T Consensus 138 ~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~---~~---~~~~~~~~~~g~~p~~~~~spdg~~l~v~~ 211 (365)
T 1jof_A 138 NYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGE---VE---LVGSVDAPDPGDHPRWVAMHPTGNYLYALM 211 (365)
T ss_dssp EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC---EE---EEEEEECSSTTCCEEEEEECTTSSEEEEEE
T ss_pred eEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCC---EE---EeeeEecCCCCCCCCEeEECCCCCEEEEEE
Confidence 23456889999999999888764 6789999986 332 11 122232 2456789999999999988777
Q ss_pred C-CCcEEEEecCc--cccccCCCCccccccccccCCCCCee------eeeeEE-eCCCCCEEEEec--CC-----EEEEE
Q 013578 319 K-DGTLRVWNINV--RYHLDEDPKTLKVLPIPLLDSNGATL------QYDRLS-LSSDGKILAATH--GS-----TLQWL 381 (440)
Q Consensus 319 ~-dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~~-~s~~g~~l~~~~--~~-----~i~i~ 381 (440)
. ++.|.+|++.. +..... ......+ +. ...++.. .+..++ |+|||++|+++. ++ .|.+|
T Consensus 212 ~~~~~v~v~~~~~~~g~~~~~-~~~~~~~--~~-~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~ 287 (365)
T 1jof_A 212 EAGNRICEYVIDPATHMPVYT-HHSFPLI--PP-GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGF 287 (365)
T ss_dssp TTTTEEEEEEECTTTCCEEEE-EEEEESS--CT-TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEE
T ss_pred CCCCeEEEEEEeCCCCcEEEc-cceEEcC--CC-CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEE
Confidence 5 78999998752 211000 0000000 00 0011111 467899 999999887653 23 89999
Q ss_pred EcC-Cccchhh--hhccccCCeEEEEecC---CCCCCCCCcceEEEEeeC-CCeEEEEeCCC
Q 013578 382 SVE-TGKVLDT--AEKAHEGEITCMAWAP---KTIPMGNQQVSVLATSSV-DKKVKLWLAPS 436 (440)
Q Consensus 382 d~~-~~~~~~~--~~~~h~~~v~~v~~~~---~~~~~~~~~~~~l~t~~~-Dg~i~vw~~~~ 436 (440)
++. +++.... ....+...+..++|+| ++ ++|++++. ++.|++|+++.
T Consensus 288 ~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg--------~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 288 KLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD--------EWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp EECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT--------TEEEEECSSSCEEEEEEEET
T ss_pred EECCCCCEEEeeeeeecCCCCcccceecCCCcCC--------CEEEEEEcCCCeEEEEEEch
Confidence 996 5664321 1123455677899999 77 78888876 48999998864
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=1.1e-18 Score=155.11 Aligned_cols=288 Identities=12% Similarity=0.123 Sum_probs=170.9
Q ss_pred CCEEEEee----CCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecC-CcceEEeecccc--ccc
Q 013578 103 GKCLATAC----ADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL-SGCSLYMYGEEK--AIS 175 (440)
Q Consensus 103 g~~l~t~s----~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~-~~~~~~~~~~~~--~~~ 175 (440)
..+++.|+ .++.|.+|+++........... . +...+..++|+|++++|++++.+. ....+.+|.... ...
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~-~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~ 89 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSD-A--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL 89 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEE-E--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeec-c--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence 34555553 4678999988654333222222 2 557788999999999999888752 123444443322 100
Q ss_pred cccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeee----e--C--
Q 013578 176 TNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNV----D--T-- 247 (440)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~----~--~-- 247 (440)
.. ....... ...+....+ +++.++++...++.|.+|++.....+..+ . .
T Consensus 90 ~~--------------~~~~~~~-------~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~ 146 (361)
T 3scy_A 90 HL--------------LNTQKTM-------GADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSG 146 (361)
T ss_dssp EE--------------EEEEECS-------SSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCC
T ss_pred EE--------------eeEeccC-------CCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCC
Confidence 00 0000000 001111122 67755555567899999999754333221 1 1
Q ss_pred ------CCCcccEEEecCCCCeEEEEec-CCCEEEEEeEecCC----Cceeee-eeeeeeeccccceEEEEEcCCCCEEE
Q 013578 248 ------NQLKNNMAAISPNGRFLAAAAF-TADVKVWEIVYSKD----GLVKAV-TSVMQLKGHKSAVTWLCFAPNSEQII 315 (440)
Q Consensus 248 ------~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~----~~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~ 315 (440)
+...+.+++|+|+|++|++++. ++.|.+|++..... ...... ........+...+.+++|+|+|++++
T Consensus 147 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 226 (361)
T 3scy_A 147 PDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAY 226 (361)
T ss_dssp SCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred CCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEE
Confidence 1122467999999997776654 78999999865431 000000 00111222345678999999999887
Q ss_pred EEe-CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec---CCEEEEEEcC--Ccc--
Q 013578 316 TAS-KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH---GSTLQWLSVE--TGK-- 387 (440)
Q Consensus 316 s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---~~~i~i~d~~--~~~-- 387 (440)
+++ .++.|.+||+.++... .... ......+......++|+|||++|+++. ++.|.+|++. +++
T Consensus 227 v~~~~~~~v~v~~~~~g~~~-----~~~~----~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~ 297 (361)
T 3scy_A 227 LINEIGGTVIAFRYADGMLD-----EIQT----VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLT 297 (361)
T ss_dssp EEETTTCEEEEEEEETTEEE-----EEEE----EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEE
T ss_pred EEcCCCCeEEEEEecCCceE-----EeEE----EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEE
Confidence 777 6899999999854221 0000 011111122346899999999886643 4789999985 454
Q ss_pred chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEee-CCCeEEEEeCC
Q 013578 388 VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSS-VDKKVKLWLAP 435 (440)
Q Consensus 388 ~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~-~Dg~i~vw~~~ 435 (440)
.+..+. . ...+.+++|+|++ ++|++++ .++.|.+|+++
T Consensus 298 ~~~~~~-~-g~~~~~~~~spdg--------~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 298 KVGYQL-T-GIHPRNFIITPNG--------KYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EEEEEE-C-SSCCCEEEECTTS--------CEEEEEETTTTEEEEEEEC
T ss_pred EeeEec-C-CCCCceEEECCCC--------CEEEEEECCCCCEEEEEEE
Confidence 333332 2 4578899999998 7777776 67999997554
No 156
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.85 E-value=2.7e-20 Score=180.98 Aligned_cols=289 Identities=13% Similarity=0.068 Sum_probs=177.2
Q ss_pred eEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCC---CCCceEEEccCCCeEEEEeecC------CcceE
Q 013578 95 TGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPG---GPPTAVAFADNATSIVVATHNL------SGCSL 165 (440)
Q Consensus 95 ~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~---~~v~~v~~~~~~~~l~~~~~~~------~~~~~ 165 (440)
..++|+|||++++++ .|++|++||+.+++.. .....+. ..+.+++|+|||++|++++... ....+
T Consensus 19 ~~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i 92 (719)
T 1z68_A 19 FFPNWISGQEYLHQS-ADNNIVLYNIETGQSY-----TILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATY 92 (719)
T ss_dssp CCCEESSSSEEEEEC-TTSCEEEEESSSCCEE-----EEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred CccEECCCCeEEEEc-CCCCEEEEEcCCCcEE-----EEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEE
Confidence 378999999766554 6999999999887532 2221221 2489999999999999887632 12567
Q ss_pred EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeee
Q 013578 166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNV 245 (440)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 245 (440)
++|+......... ..+. .......++|||+ .|+.+. ++.|++|++.+++.....
T Consensus 93 ~~~d~~~g~~~~~----~~l~--------------------~~~~~~~~SPDG~-~la~~~-~~~i~~~~~~~g~~~~l~ 146 (719)
T 1z68_A 93 YIYDLSNGEFVRG----NELP--------------------RPIQYLCWSPVGS-KLAYVY-QNNIYLKQRPGDPPFQIT 146 (719)
T ss_dssp EEEETTTTEECCS----SCCC--------------------SSBCCEEECSSTT-CEEEEE-TTEEEEESSTTSCCEECC
T ss_pred EEEECCCCccccc----eecC--------------------cccccceECCCCC-EEEEEE-CCeEEEEeCCCCCcEEEe
Confidence 7887654421000 0000 1123355699999 555554 678999999888765433
Q ss_pred e-CCCC-----------------cccEEEecCCCCeEEEEecCC----------------------------------CE
Q 013578 246 D-TNQL-----------------KNNMAAISPNGRFLAAAAFTA----------------------------------DV 273 (440)
Q Consensus 246 ~-~~~~-----------------~v~~~~~s~~~~~l~~~~~dg----------------------------------~i 273 (440)
. ++.. ...+++|+|||++|++++.|. .|
T Consensus 147 ~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l 226 (719)
T 1z68_A 147 FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRI 226 (719)
T ss_dssp CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEE
T ss_pred cCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEE
Confidence 2 2111 125899999999999988652 67
Q ss_pred EEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC----cEEEEe----cCccccccCCCCcccccc
Q 013578 274 KVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG----TLRVWN----INVRYHLDEDPKTLKVLP 345 (440)
Q Consensus 274 ~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg----~i~iwd----~~~~~~~~~~~~~~~~~~ 345 (440)
++||+..+.............+.+|...+.+++|+||++++++....+ .|.+|| +.++.... ...
T Consensus 227 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~-------~~~ 299 (719)
T 1z68_A 227 FIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK-------TQE 299 (719)
T ss_dssp EEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG-------GGE
T ss_pred EEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE-------EEe
Confidence 788875443100000000022446788899999999988777654322 488899 66553321 000
Q ss_pred ccccCCCCCeeeee-----eEEeCCCCCEEEE--ec-CC--EEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCC
Q 013578 346 IPLLDSNGATLQYD-----RLSLSSDGKILAA--TH-GS--TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQ 415 (440)
Q Consensus 346 ~~~~~~~~~~~~v~-----~~~~s~~g~~l~~--~~-~~--~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~ 415 (440)
....++...+. .++|+|||+.++. +. ++ .|++||+.+++. ..+ ..+...+..+.+. ++
T Consensus 300 ---~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~l-t~~~~~v~~~~~~-d~------ 367 (719)
T 1z68_A 300 ---HIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQI-TSGKWEAINIFRV-TQ------ 367 (719)
T ss_dssp ---EEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EEC-SCSSSCEEEEEEE-CS------
T ss_pred ---cccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-Eec-ccCceEEEEEEEE-eC------
Confidence 00011222233 6899999996554 32 33 688888877763 344 2455568777777 65
Q ss_pred cceEEEEeeC-----CCeEEEEeCCC
Q 013578 416 QVSVLATSSV-----DKKVKLWLAPS 436 (440)
Q Consensus 416 ~~~~l~t~~~-----Dg~i~vw~~~~ 436 (440)
..|+..+. ++..++|.++.
T Consensus 368 --~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 368 --DSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp --SEEEEEESCGGGCTTCBEEEEEEC
T ss_pred --CEEEEEEecCCCCCceEEEEEEeC
Confidence 45554444 48899998753
No 157
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.84 E-value=8.1e-20 Score=164.23 Aligned_cols=292 Identities=14% Similarity=0.129 Sum_probs=177.5
Q ss_pred cccccccCcceeE-----EEEccCCCEEEEeeC-CCc--EEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEE
Q 013578 84 VNTLKGHGDSVTG-----LCFSSDGKCLATACA-DGV--IRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVV 155 (440)
Q Consensus 84 ~~~l~~H~~~V~~-----l~~s~dg~~l~t~s~-dg~--v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~ 155 (440)
+..+..|...... .+|||||++|+.++. +|. |.+||+.+++ .......+...+..++|+|+++.|+.
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~-----~~~lt~~~~~~~~~~~~spdg~~l~~ 97 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV-----ATQLTEGRGDNTFGGFLSPDDDALFY 97 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCE-----EEECCCSSCBCSSSCEECTTSSEEEE
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCc-----eEEeeeCCCCCccceEEcCCCCEEEE
Confidence 4556666655555 899999999999887 774 7777777654 22333444455567899999999999
Q ss_pred EeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEE-----------
Q 013578 156 ATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIAS----------- 224 (440)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s----------- 224 (440)
+..+ ..+++|+........ .+... ...... .....++++. +++.
T Consensus 98 ~~~~---~~l~~~d~~~g~~~~-------------~~~~~---~~~~~~-----~~~~~~~dg~-~l~~~~~~~~~~~~~ 152 (388)
T 3pe7_A 98 VKDG---RNLMRVDLATLEENV-------------VYQVP---AEWVGY-----GTWVANSDCT-KLVGIEIRREDWVPL 152 (388)
T ss_dssp EETT---TEEEEEETTTCCEEE-------------EEECC---TTEEEE-----EEEEECTTSS-EEEEEEEEGGGCCCC
T ss_pred EeCC---CeEEEEECCCCccee-------------eeech---hhcccc-----cceeECCCCC-eeccccccCcccccc
Confidence 8865 456666654431100 00000 000000 0012256776 4432
Q ss_pred -----------eeCCceEEEEeCCCCceeeeeeCCCCcccEEEecC-CCCeEEEEecCC------CEEEEEeEecCCCce
Q 013578 225 -----------CSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISP-NGRFLAAAAFTA------DVKVWEIVYSKDGLV 286 (440)
Q Consensus 225 -----------~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg------~i~i~d~~~~~~~~~ 286 (440)
...+..|++||+.+++..... .+...+..++|+| +|+.|+....++ .|.++|+....
T Consensus 153 ~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---- 227 (388)
T 3pe7_A 153 TDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN---- 227 (388)
T ss_dssp CSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC----
T ss_pred cccchhhhhhccCCcceEEEEECCCCceEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc----
Confidence 234578999999988754433 4455678899999 999998877643 56666653322
Q ss_pred eeeeeeeeeeccc--cceEEEEEcCCCCEEEEEeC-CC----cEEEEecCccccccCCCCccccccccccCCCCCe-eee
Q 013578 287 KAVTSVMQLKGHK--SAVTWLCFAPNSEQIITASK-DG----TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGAT-LQY 358 (440)
Q Consensus 287 ~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 358 (440)
...+..+. ..+..++|+|||+.|+..+. ++ .|++||+.++... .....+ ...+. ...
T Consensus 228 -----~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~-----~l~~~~-----~~~~~~~~~ 292 (388)
T 3pe7_A 228 -----MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENR-----QLTSMP-----ACSHLMSNY 292 (388)
T ss_dssp -----CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEE-----EEEEEC-----CEEEEEECT
T ss_pred -----eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceE-----EEEcCC-----CceeeeecC
Confidence 22333333 35788999999998765443 22 3999999876421 000000 00000 001
Q ss_pred eeEEeCCCCCEEEEe----------cCCEEEEEEcCCccchhhhhccccC-----------CeEEEEecCCCCCCCCCcc
Q 013578 359 DRLSLSSDGKILAAT----------HGSTLQWLSVETGKVLDTAEKAHEG-----------EITCMAWAPKTIPMGNQQV 417 (440)
Q Consensus 359 ~~~~~s~~g~~l~~~----------~~~~i~i~d~~~~~~~~~~~~~h~~-----------~v~~v~~~~~~~~~~~~~~ 417 (440)
...+|+|||+.|+.. .+..|++||+.+++... + ..|.. .+.+++|+||+
T Consensus 293 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l-~~~~~~~~~~~~~~~~~~~~~~~spDg-------- 362 (388)
T 3pe7_A 293 DGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHR-V-ARHDTSWKVFEGDRQVTHPHPSFTPDD-------- 362 (388)
T ss_dssp TSSEEEEEECCC------------CCCCEEEEEETTTTEEEE-E-EECCCCCCCBTTBSSTTCCCCEECTTS--------
T ss_pred CCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEE-e-ccccCcccccccccccCCCCccCCCCC--------
Confidence 234799999988752 35689999999887543 3 23544 57889999998
Q ss_pred eEEEEee-CCCeEEEEeCC
Q 013578 418 SVLATSS-VDKKVKLWLAP 435 (440)
Q Consensus 418 ~~l~t~~-~Dg~i~vw~~~ 435 (440)
+.|+..+ .+|...||.++
T Consensus 363 ~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 363 KQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp SEEEEEECTTSSCEEEEEE
T ss_pred CEEEEEecCCCceeEEEEE
Confidence 5665544 57877777654
No 158
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.83 E-value=2.2e-19 Score=174.68 Aligned_cols=266 Identities=14% Similarity=0.070 Sum_probs=163.6
Q ss_pred CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCC-----CCceEEEccCCCeEEEEeecCCcceE
Q 013578 91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGG-----PPTAVAFADNATSIVVATHNLSGCSL 165 (440)
Q Consensus 91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~-----~v~~v~~~~~~~~l~~~~~~~~~~~~ 165 (440)
.....+++|+|||++|+++ ||+|++||+.++... .....+.. ....++|+|||++++.++.+...
T Consensus 16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~--- 85 (740)
T 4a5s_A 16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS-----VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQ--- 85 (740)
T ss_dssp CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEE-----EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEEC---
T ss_pred cccccccEECCCCcEEEEc--CCcEEEEECCCCceE-----EEEechhhhhhcccccceEECCCCCEEEEEECCeee---
Confidence 3456789999999999986 999999999987632 22222221 22448889999988877654100
Q ss_pred EeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeee
Q 013578 166 YMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNV 245 (440)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 245 (440)
| --+..+.+.+||+.+++.. .+
T Consensus 86 --------------------------~-------------------------------r~~~~~~~~~~d~~~~~~~-~l 107 (740)
T 4a5s_A 86 --------------------------W-------------------------------RHSYTASYDIYDLNKRQLI-TE 107 (740)
T ss_dssp --------------------------S-------------------------------SSCEEEEEEEEETTTTEEC-CS
T ss_pred --------------------------E-------------------------------EEccceEEEEEECCCCcEE-Ec
Confidence 0 0011245889999988754 45
Q ss_pred eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceee-eeeeeeeecccc---------ceEEEEEcCCCCEEE
Q 013578 246 DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKA-VTSVMQLKGHKS---------AVTWLCFAPNSEQII 315 (440)
Q Consensus 246 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~h~~---------~v~~~~~~p~~~~l~ 315 (440)
..+...+...+|||||+.||.+. ++.|++|++..+....... ......+.++.. ....+.|||||++|+
T Consensus 108 ~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la 186 (740)
T 4a5s_A 108 ERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLA 186 (740)
T ss_dssp SCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEE
T ss_pred ccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEE
Confidence 55566789999999999999885 7899999986543100000 000011222221 223589999999999
Q ss_pred EEeCCCc-EE-----------------------------------EEecCc---cccccCCCCccccccccccCCCCCee
Q 013578 316 TASKDGT-LR-----------------------------------VWNINV---RYHLDEDPKTLKVLPIPLLDSNGATL 356 (440)
Q Consensus 316 s~~~dg~-i~-----------------------------------iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (440)
..+.|.+ ++ +||+.+ +... ....+..+. ...++..
T Consensus 187 ~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~-----~~~~l~~~~-~~~~~~~ 260 (740)
T 4a5s_A 187 YAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNA-----TSIQITAPA-SMLIGDH 260 (740)
T ss_dssp EEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCC-----CEEEECCCH-HHHTSCE
T ss_pred EEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcc-----eEEEecCCc-cCCCCCe
Confidence 8864433 44 444443 2100 000000000 0002455
Q ss_pred eeeeEEeCCCCCEEEEec-----CCEEEEEEcCCcc----chhh--h-hccccCCeE-----EEEecCCCCCCCCCcceE
Q 013578 357 QYDRLSLSSDGKILAATH-----GSTLQWLSVETGK----VLDT--A-EKAHEGEIT-----CMAWAPKTIPMGNQQVSV 419 (440)
Q Consensus 357 ~v~~~~~s~~g~~l~~~~-----~~~i~i~d~~~~~----~~~~--~-~~~h~~~v~-----~v~~~~~~~~~~~~~~~~ 419 (440)
.+..++|+|||++++... +..|++||+.+++ +... + ...|.+.|. .+.|+||+ +.
T Consensus 261 ~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG--------~~ 332 (740)
T 4a5s_A 261 YLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG--------NS 332 (740)
T ss_dssp EEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS--------SE
T ss_pred EEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCC--------CE
Confidence 688999999999766532 2479999999987 2221 1 134555554 78999998 66
Q ss_pred EE-EeeC-C--CeEEEEeCCCCCC
Q 013578 420 LA-TSSV-D--KKVKLWLAPSLES 439 (440)
Q Consensus 420 l~-t~~~-D--g~i~vw~~~~~~~ 439 (440)
|+ ..+. + ..|.+|++.++++
T Consensus 333 l~~~~s~~~G~~~l~~~~~~~~~~ 356 (740)
T 4a5s_A 333 FYKIISNEEGYRHICYFQIDKKDC 356 (740)
T ss_dssp EEEEEECTTSCEEEEEEETTCSSC
T ss_pred EEEEEEcCCCceEEEEEECCCCce
Confidence 65 5554 3 4578888876653
No 159
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.82 E-value=4.9e-19 Score=155.78 Aligned_cols=245 Identities=12% Similarity=0.131 Sum_probs=162.8
Q ss_pred ceeEEEEccCCCEE-EEeeCCCcEEEEecCCCCCcceeeEEecCCC----CCCCceEEEccCCCeEEEEeecC-------
Q 013578 93 SVTGLCFSSDGKCL-ATACADGVIRVHKLDDASSKSFKFLRINLPP----GGPPTAVAFADNATSIVVATHNL------- 160 (440)
Q Consensus 93 ~V~~l~~s~dg~~l-~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~----~~~v~~v~~~~~~~~l~~~~~~~------- 160 (440)
.+.+++|+|||+++ ++++.++.|.+||+.+++.. ......+ ...+..++|+|++++++++....
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 110 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL----GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF 110 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE----EEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE----eeEEcCCcccccccccceEECCCCCEEEEEecccccccccc
Confidence 58899999999766 45566889999999876522 1111121 22688999999999988885210
Q ss_pred --CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC
Q 013578 161 --SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT 238 (440)
Q Consensus 161 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 238 (440)
....+.+|+...... ...+.....+..+.++|+++ +++++ ++.|++||+.+
T Consensus 111 ~~~~~~i~v~d~~~~~~------------------------~~~~~~~~~~~~~~~s~dg~-~l~~~--~~~i~~~d~~~ 163 (337)
T 1pby_B 111 EVQPTRVALYDAETLSR------------------------RKAFEAPRQITMLAWARDGS-KLYGL--GRDLHVMDPEA 163 (337)
T ss_dssp EECCCEEEEEETTTTEE------------------------EEEEECCSSCCCEEECTTSS-CEEEE--SSSEEEEETTT
T ss_pred cccCceEEEEECCCCcE------------------------EEEEeCCCCcceeEECCCCC-EEEEe--CCeEEEEECCC
Confidence 124566665543211 01111111233445688998 44444 57799999999
Q ss_pred CceeeeeeCCCCcccEEEecCCCCeEEEEecCC------------------------CEEEEEeEecCCCceeeeeeeee
Q 013578 239 GKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTA------------------------DVKVWEIVYSKDGLVKAVTSVMQ 294 (440)
Q Consensus 239 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg------------------------~i~i~d~~~~~~~~~~~~~~~~~ 294 (440)
++.+..+..+.. ...+.|+|+++.+++.+.++ .|.+||+..++ . ....
T Consensus 164 ~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~---~----~~~~ 235 (337)
T 1pby_B 164 GTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE---M----AMRE 235 (337)
T ss_dssp TEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC---E----EEEE
T ss_pred CcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC---c----eEee
Confidence 988877765431 12337899998776665443 35677765433 1 1233
Q ss_pred eeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec
Q 013578 295 LKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH 374 (440)
Q Consensus 295 ~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 374 (440)
+..+...+.+++|+|++++|+++ ++.|.+||+.+++.... +.. ...+..++|+|+|++|+++.
T Consensus 236 ~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~-------~~~--------~~~~~~~~~s~dg~~l~~~~ 298 (337)
T 1pby_B 236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKR-------VPL--------PHSYYSVNVSTDGSTVWLGG 298 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEE-------EEC--------SSCCCEEEECTTSCEEEEES
T ss_pred cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcce-------ecC--------CCceeeEEECCCCCEEEEEc
Confidence 44566778899999999999888 68999999986543211 110 12356799999999777654
Q ss_pred -CCEEEEEEcCCccchhhhh
Q 013578 375 -GSTLQWLSVETGKVLDTAE 393 (440)
Q Consensus 375 -~~~i~i~d~~~~~~~~~~~ 393 (440)
++.|++||+.+++.+..+.
T Consensus 299 ~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 299 ALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp BSSEEEEEETTTCCEEEEEE
T ss_pred CCCcEEEEECcCCcEEEEEE
Confidence 8999999999998877763
No 160
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.81 E-value=2.1e-17 Score=141.81 Aligned_cols=247 Identities=15% Similarity=0.219 Sum_probs=164.1
Q ss_pred cccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEec---CCCCCCCceEEEccCCCeEEEEeecCCcce
Q 013578 88 KGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRIN---LPPGGPPTAVAFADNATSIVVATHNLSGCS 164 (440)
Q Consensus 88 ~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~---~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~ 164 (440)
.+|-..+.+++++++|+++++...++.|.+||..... ....... ..+...+..+++.
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~---~~~~~~~~~~~~~~~~p~~i~~~----------------- 85 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF---KFQFGECGKRDSQLLYPNRVAVV----------------- 85 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE---EEEECCBSSSTTCBSSEEEEEEE-----------------
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcE---EEEecccCCCcccccCceEEEEE-----------------
Confidence 4567789999999999999988889999999976321 0011000 0011223334432
Q ss_pred EEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEee-CCceEEEEeCCCCceee
Q 013578 165 LYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCS-EGTDISIWHGKTGKLLG 243 (440)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~ 243 (440)
.+++. ++++.. .++.|++|| .+++.+.
T Consensus 86 --------------------------------------------------~~~g~-l~v~~~~~~~~i~~~d-~~g~~~~ 113 (286)
T 1q7f_A 86 --------------------------------------------------RNSGD-IIVTERSPTHQIQIYN-QYGQFVR 113 (286)
T ss_dssp --------------------------------------------------TTTTE-EEEEECGGGCEEEEEC-TTSCEEE
T ss_pred --------------------------------------------------cCCCe-EEEEcCCCCCEEEEEC-CCCcEEE
Confidence 12222 344442 267799999 5677666
Q ss_pred eeeC-CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee--ccccceEEEEEcCCCCEEEEEeCC
Q 013578 244 NVDT-NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK--GHKSAVTWLCFAPNSEQIITASKD 320 (440)
Q Consensus 244 ~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~l~s~~~d 320 (440)
.+.. +...+..++++++|+++++...++.|.+||.. +. ....+. ++...+.+++++|+|+++++...+
T Consensus 114 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~--------~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~ 184 (286)
T 1q7f_A 114 KFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GN--------VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA 184 (286)
T ss_dssp EECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC--------EEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred EecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CC--------EEEEeCCCCccCCcEEEEECCCCCEEEEECCC
Confidence 6643 23457889999999988777778899999852 11 122222 344568999999999988888889
Q ss_pred CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CC-EEEEEEcCCccchhhhhcccc-
Q 013578 321 GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GS-TLQWLSVETGKVLDTAEKAHE- 397 (440)
Q Consensus 321 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~-~i~i~d~~~~~~~~~~~~~h~- 397 (440)
+.|++||..... + ..+ ...++......++++++|+++++.. ++ .|.+|+. +++.+..+. .+.
T Consensus 185 ~~i~~~~~~g~~-~-------~~~-----~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~-~~~~ 249 (286)
T 1q7f_A 185 HCVKVFNYEGQY-L-------RQI-----GGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALE-SKVK 249 (286)
T ss_dssp TEEEEEETTCCE-E-------EEE-----SCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEE-ESSC
T ss_pred CEEEEEcCCCCE-E-------EEE-----ccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEc-ccCC
Confidence 999999975321 1 111 1111123466899999999888765 54 9999995 466555553 333
Q ss_pred -CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 398 -GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 398 -~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
..+.+++++|++ +++++ +.|++|++|++....+
T Consensus 250 ~~~~~~i~~~~~g--------~l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 250 HAQCFDVALMDDG--------SVVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp CSCEEEEEEETTT--------EEEEE-ETTTEEEEEECSCCCC
T ss_pred CCcceeEEECCCC--------cEEEE-CCCCeEEEEEcccccc
Confidence 347899999998 77777 6799999999976543
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.81 E-value=8.4e-19 Score=170.52 Aligned_cols=307 Identities=7% Similarity=-0.013 Sum_probs=184.5
Q ss_pred CCCcccCcc----ccccccccCc---ceeEEEEccCCCEEEEeeC---------CCcEEEEecCCCCCcceeeEEecCCC
Q 013578 74 DQNKRHHPL----DVNTLKGHGD---SVTGLCFSSDGKCLATACA---------DGVIRVHKLDDASSKSFKFLRINLPP 137 (440)
Q Consensus 74 ~~~~~~~~~----~~~~l~~H~~---~V~~l~~s~dg~~l~t~s~---------dg~v~vW~~~~~~~~~~~~~~~~~~~ 137 (440)
++++..|+. ....+.+|.. .|.+++|||||++|++++. |+.|++||+.+++.... ...
T Consensus 35 d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~------~~l 108 (719)
T 1z68_A 35 DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG------NEL 108 (719)
T ss_dssp TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS------SCC
T ss_pred CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc------eec
Confidence 555665543 2333444443 4999999999999999876 78999999987653100 011
Q ss_pred CCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEe----------e
Q 013578 138 GGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTL----------F 207 (440)
Q Consensus 138 ~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~ 207 (440)
...+..++|+|||+.|+.+.. ..+++|+........-.. ..+...+.... .
T Consensus 109 ~~~~~~~~~SPDG~~la~~~~----~~i~~~~~~~g~~~~l~~---------------~~~~~~v~~g~~~~v~~ee~~~ 169 (719)
T 1z68_A 109 PRPIQYLCWSPVGSKLAYVYQ----NNIYLKQRPGDPPFQITF---------------NGRENKIFNGIPDWVYEEEMLA 169 (719)
T ss_dssp CSSBCCEEECSSTTCEEEEET----TEEEEESSTTSCCEECCC---------------CCBTTTEEESSCCHHHHHHTTC
T ss_pred CcccccceECCCCCEEEEEEC----CeEEEEeCCCCCcEEEec---------------CCCcCCeEcccccceeeeeccc
Confidence 256889999999999998853 378888765432110000 00000000000 0
Q ss_pred cccccccCCCCCeEEEEeeCCc----------------------------------eEEEEeCCCCcee--------eee
Q 013578 208 GASATYGTADGSTIIASCSEGT----------------------------------DISIWHGKTGKLL--------GNV 245 (440)
Q Consensus 208 ~~~~~~~~~~~~~~l~s~~~d~----------------------------------~i~vwd~~~~~~~--------~~~ 245 (440)
......++|||+ .|+.++.|. .|++||+.+++.. ..+
T Consensus 170 ~~~~~~wSPDG~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 248 (719)
T 1z68_A 170 TKYALWWSPNGK-FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMI 248 (719)
T ss_dssp SSCCEEECTTSS-EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHH
T ss_pred CcccEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccC
Confidence 012456799999 666555431 7889999887643 122
Q ss_pred eCCCCcccEEEecCCCCeEEEEecCC----CEEEEE----eEecCCCceeeeeeeeee----eccccceE-----EEEEc
Q 013578 246 DTNQLKNNMAAISPNGRFLAAAAFTA----DVKVWE----IVYSKDGLVKAVTSVMQL----KGHKSAVT-----WLCFA 308 (440)
Q Consensus 246 ~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~i~d----~~~~~~~~~~~~~~~~~~----~~h~~~v~-----~~~~~ 308 (440)
..+...+..++|+||++++++....+ .|.+|| +..++ ....+ .+|...+. .+.|+
T Consensus 249 ~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~--------~~~~~~~~~~~~~~~~~~~~~~~~~~s 320 (719)
T 1z68_A 249 ASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD--------CPKTQEHIEESRTGWAGGFFVSTPVFS 320 (719)
T ss_dssp HTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE--------CCGGGEEEEECSSSCSSSSSCCCCEEC
T ss_pred CCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc--------eEEEEecccccCCceEccccCCccEEC
Confidence 34667789999999988777754332 377777 43332 22222 35677776 88999
Q ss_pred CCCCEEEE--EeCCC--cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-ecC-----CEE
Q 013578 309 PNSEQIIT--ASKDG--TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-THG-----STL 378 (440)
Q Consensus 309 p~~~~l~s--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~-----~~i 378 (440)
|||+.|+. ...+| .|.+||+.++.. ..+ ..+...+..+.++ +++.|+. +.+ +..
T Consensus 321 pdg~~l~~~~~~~~g~~~l~~~~~~~~~~--------~~l-------t~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~ 384 (719)
T 1z68_A 321 YDAISYYKIFSDKDGYKHIHYIKDTVENA--------IQI-------TSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRR 384 (719)
T ss_dssp TTSSCEEEEEECTTSCEEEEEESSCSTTC--------EEC-------SCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCB
T ss_pred CCCCeEEEEEEccCCceEEEEEECCCCce--------Eec-------ccCceEEEEEEEE-eCCEEEEEEecCCCCCceE
Confidence 99996654 44555 466667654321 111 1112235556666 7776654 434 667
Q ss_pred EEEEcCC--ccc-hhhh---hccccCCeEEEEecCCCCCCCCCcceEEE-EeeCC--CeEEEEeCCCCC
Q 013578 379 QWLSVET--GKV-LDTA---EKAHEGEITCMAWAPKTIPMGNQQVSVLA-TSSVD--KKVKLWLAPSLE 438 (440)
Q Consensus 379 ~i~d~~~--~~~-~~~~---~~~h~~~v~~v~~~~~~~~~~~~~~~~l~-t~~~D--g~i~vw~~~~~~ 438 (440)
++|.+.. +.. ...+ ..+|...+..+.|+|++ ++++ +++.+ ..+.+|++.+++
T Consensus 385 ~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg--------~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 385 NIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYA--------KYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp EEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGG--------SSEEEEECCBSSCEEEEECSSSCC
T ss_pred EEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCC--------CEEEEEcCCCCCCeEEEEECCCCC
Confidence 7777643 421 1222 12366778899999987 4444 44443 568899887765
No 162
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.81 E-value=2.4e-17 Score=145.66 Aligned_cols=220 Identities=12% Similarity=0.158 Sum_probs=136.7
Q ss_pred ccccccCcceeEEEEccCCCEEEEee-CCCcEEEEecCCCCCcceeeEEecCC--------CCCCCceEEEccCCCeEEE
Q 013578 85 NTLKGHGDSVTGLCFSSDGKCLATAC-ADGVIRVHKLDDASSKSFKFLRINLP--------PGGPPTAVAFADNATSIVV 155 (440)
Q Consensus 85 ~~l~~H~~~V~~l~~s~dg~~l~t~s-~dg~v~vW~~~~~~~~~~~~~~~~~~--------~~~~v~~v~~~~~~~~l~~ 155 (440)
..+..|...+..++|+|||++|++++ .++.|++|++...... ......... ....+.+++|+
T Consensus 79 ~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~s-------- 149 (347)
T 3hfq_A 79 NTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGAL-TLTDTVQHSGHGPRPEQDGSHIHYTDLT-------- 149 (347)
T ss_dssp EEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCE-EEEEEEECCCCCSSTTCSSCCEEEEEEC--------
T ss_pred eeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCe-eecceeecCCCCCCccccCCCceEEEEC--------
Confidence 34455788899999999999998888 7899999999643211 111111110 01123344444
Q ss_pred EeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEe
Q 013578 156 ATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWH 235 (440)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd 235 (440)
|+|+ ++++...++.|++|+
T Consensus 150 ------------------------------------------------------------pdg~-l~v~~~~~~~v~~~~ 168 (347)
T 3hfq_A 150 ------------------------------------------------------------PDNR-LAVIDLGSDKVYVYN 168 (347)
T ss_dssp ------------------------------------------------------------TTSC-EEEEETTTTEEEEEE
T ss_pred ------------------------------------------------------------CCCc-EEEEeCCCCEEEEEE
Confidence 4444 555666677899999
Q ss_pred CC-CCceee--eeeC-CCCcccEEEecCCCCeEEEE-ecCCCEEEEEeEecCCCceeeeeeeeeeeccc------cceEE
Q 013578 236 GK-TGKLLG--NVDT-NQLKNNMAAISPNGRFLAAA-AFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK------SAVTW 304 (440)
Q Consensus 236 ~~-~~~~~~--~~~~-~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~------~~v~~ 304 (440)
+. +++... .+.. ....+..++|+|+|++++++ ..++.|.+|++.... +.. .....+.... ..+..
T Consensus 169 ~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~-g~~---~~~~~~~~~~~~~~~~~~~~~ 244 (347)
T 3hfq_A 169 VSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQT-GAF---TQLGIVKTIPADYTAHNGAAA 244 (347)
T ss_dssp ECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTT-TEE---EEEEEEESSCTTCCSCCEEEE
T ss_pred ECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCC-Cce---EEeeeeeecCCCCCCCCccee
Confidence 88 454322 2222 22356789999999976665 567899999987422 111 1122222222 45889
Q ss_pred EEEcCCCCEE-EEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEE
Q 013578 305 LCFAPNSEQI-ITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWL 381 (440)
Q Consensus 305 ~~~~p~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~ 381 (440)
++|+|+|++| ++...++.|.+|++.....+ .....+ ..+...+..++|+|||++|+++. ++.+.+|
T Consensus 245 i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~----~~~~~~-------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 245 IRLSHDGHFLYVSNRGYNTLAVFAVTADGHL----TLIQQI-------STEGDFPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp EEECTTSCEEEEEEETTTEEEEEEECGGGCE----EEEEEE-------ECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEECCCCcE----EEeEEE-------ecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 9999999987 45566899999999732110 001100 11112356899999999887764 5899999
Q ss_pred --EcCCccch
Q 013578 382 --SVETGKVL 389 (440)
Q Consensus 382 --d~~~~~~~ 389 (440)
|..+|++.
T Consensus 314 ~~d~~tg~l~ 323 (347)
T 3hfq_A 314 ARDLTSGKLS 323 (347)
T ss_dssp EECTTTCCEE
T ss_pred EEeCCCCeEE
Confidence 55566654
No 163
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.80 E-value=3e-17 Score=143.55 Aligned_cols=193 Identities=12% Similarity=0.133 Sum_probs=132.9
Q ss_pred cCCCCCeEEEEeeCCceEEEEeCCCCc-eeeeee---------CCCCcccEEEecC-CCCeEEEEe-cCCCEEEEEeEec
Q 013578 214 GTADGSTIIASCSEGTDISIWHGKTGK-LLGNVD---------TNQLKNNMAAISP-NGRFLAAAA-FTADVKVWEIVYS 281 (440)
Q Consensus 214 ~~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~---------~~~~~v~~~~~s~-~~~~l~~~~-~dg~i~i~d~~~~ 281 (440)
+.++|+ ++++...++.|++||..... .+..+. .+......++++| +++++++.+ .++.|++|+.. +
T Consensus 98 ~d~~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g 175 (329)
T 3fvz_A 98 IDTDGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-G 175 (329)
T ss_dssp ECTTSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-S
T ss_pred ECCCCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-C
Confidence 356666 67777778889999975432 444442 2233577899999 788777775 68999999832 2
Q ss_pred CCCceeeeeeeeeee----------ccccceEEEEEcCC-CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccC
Q 013578 282 KDGLVKAVTSVMQLK----------GHKSAVTWLCFAPN-SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLD 350 (440)
Q Consensus 282 ~~~~~~~~~~~~~~~----------~h~~~v~~~~~~p~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 350 (440)
. .+..+. ++.....+++++|+ +.++++...++.|++||..++..+.. +.
T Consensus 176 ~--------~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~-------~~----- 235 (329)
T 3fvz_A 176 K--------FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVRE-------IK----- 235 (329)
T ss_dssp C--------EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE-------EC-----
T ss_pred C--------EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEE-------Ee-----
Confidence 1 222221 22344889999998 77777777899999999985543321 11
Q ss_pred CCCCeeeeeeEEeCCCCCEEEEe--------cCCEEEEEEcCCccchhhhh--ccccCCeEEEEecCCCCCCCCCcceEE
Q 013578 351 SNGATLQYDRLSLSSDGKILAAT--------HGSTLQWLSVETGKVLDTAE--KAHEGEITCMAWAPKTIPMGNQQVSVL 420 (440)
Q Consensus 351 ~~~~~~~v~~~~~s~~g~~l~~~--------~~~~i~i~d~~~~~~~~~~~--~~h~~~v~~v~~~~~~~~~~~~~~~~l 420 (440)
.......+..++++| +..++.. .+..|++|+..+++.+..+. .++...+.+|+++|++ .++
T Consensus 236 ~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG--------~ly 306 (329)
T 3fvz_A 236 HASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG--------TVY 306 (329)
T ss_dssp CTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS--------EEE
T ss_pred ccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC--------CEE
Confidence 111222355788888 4333331 13589999999999887762 2566789999999998 899
Q ss_pred EEeeCCCeEEEEeCCCC
Q 013578 421 ATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 421 ~t~~~Dg~i~vw~~~~~ 437 (440)
++...+++|++|++...
T Consensus 307 vad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 307 IGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EEESSSCCEEEEEEEEC
T ss_pred EEECCCCEEEEEeCCcc
Confidence 99999999999998643
No 164
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.79 E-value=5.4e-17 Score=156.29 Aligned_cols=306 Identities=12% Similarity=0.041 Sum_probs=183.6
Q ss_pred ccccccccCcceeEEEEccCCCEEEEe--eCCCcEEEEecCCCCCcceeeEEecCCCCCCCc---------eEEEc--cC
Q 013578 83 DVNTLKGHGDSVTGLCFSSDGKCLATA--CADGVIRVHKLDDASSKSFKFLRINLPPGGPPT---------AVAFA--DN 149 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~--s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~---------~v~~~--~~ 149 (440)
....+.+|...|..++|++++-++++. +.++...||....+.. ......+...+. ...|+ ||
T Consensus 15 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~SPD 89 (662)
T 3azo_A 15 DAALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA-----EESALPAPWNVRNRVFEYSGFPWAGVPRPA 89 (662)
T ss_dssp CHHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC-----EEESSCTTCCBCCCGGGTCCCCEEEECCSS
T ss_pred CHHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC-----cceeCCCCccccccccccCCccceeeeecC
Confidence 356688999999999999887777777 6688999999743321 222333434444 56666 99
Q ss_pred CCe-EEEEeecCCcceEEeeccc----cccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEE
Q 013578 150 ATS-IVVATHNLSGCSLYMYGEE----KAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIAS 224 (440)
Q Consensus 150 ~~~-l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 224 (440)
++. |+.+... ...|++++.. ........ .. ...+.. ......++|||+ .|+.
T Consensus 90 g~~~la~~~~~--~~~l~~~~~~~~g~~~~~~l~~-----~~--------~~~~~~-------~~~~~~~spDg~-~l~~ 146 (662)
T 3azo_A 90 GGPLLVFTHFG--DQRLYAFEPDAPGGAVPRPLTP-----VS--------AVGGGL-------RWADPVLLPERG-EVWC 146 (662)
T ss_dssp SSCEEEEEBTT--TCCEEEECTTSTTCCCCEECSC-----CC--------CSTTCE-------EEEEEEEETTTT-EEEE
T ss_pred CCeEEEEEECC--CCeEEEEcCCCCCCCCCEeccC-----Cc--------cCCCCc-------cccCcEECCCCC-EEEE
Confidence 999 7766543 3556766644 11100000 00 000000 112234589999 5665
Q ss_pred eeCC----------ceEEEEeCCC------Cceeeeee-CCCCcccEEEecCCCCeEEEEecCC--------CEEEEEeE
Q 013578 225 CSEG----------TDISIWHGKT------GKLLGNVD-TNQLKNNMAAISPNGRFLAAAAFTA--------DVKVWEIV 279 (440)
Q Consensus 225 ~~~d----------~~i~vwd~~~------~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg--------~i~i~d~~ 279 (440)
++.+ ..|++||+.+ ++. ..+. .+...+..++|+|||++|+.++.++ .|++||+.
T Consensus 147 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~ 225 (662)
T 3azo_A 147 MAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVT 225 (662)
T ss_dssp EEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEEC
T ss_pred EEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEEC
Confidence 5555 5799999987 544 3444 4455677889999999999887553 68999986
Q ss_pred -ecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC--cEEEEecCccccccCCCCccccccccccCCCCCee
Q 013578 280 -YSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG--TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATL 356 (440)
Q Consensus 280 -~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (440)
.+. ... ......+|...+..+.|+|||+++++++.++ .|.+||+.++........... ...+ .-..
T Consensus 226 ~~g~---~~~--~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~-~~~p-----~w~~ 294 (662)
T 3azo_A 226 EDGR---FAD--TRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEE-FAGP-----LWTP 294 (662)
T ss_dssp TTSC---EEE--EEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSB-SSCC-----CCST
T ss_pred CCCc---ccc--cEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccccc-ccCc-----cccc
Confidence 231 001 2222334568899999999999888888888 555566544322110000000 0000 0001
Q ss_pred eeeeEEeCCCCCEEEEecCCEEEEE--EcCCccchhhhhccccCCeEEE-EecCCCCCCCCCcceEEEEeeCCCe--EEE
Q 013578 357 QYDRLSLSSDGKILAATHGSTLQWL--SVETGKVLDTAEKAHEGEITCM-AWAPKTIPMGNQQVSVLATSSVDKK--VKL 431 (440)
Q Consensus 357 ~v~~~~~s~~g~~l~~~~~~~i~i~--d~~~~~~~~~~~~~h~~~v~~v-~~~~~~~~~~~~~~~~l~t~~~Dg~--i~v 431 (440)
.+..++|+|++++++++..+.+++| |..+++ +..+ ..|.+.+..+ +++++. -++++++.+.. |.+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l-~~~~~~~~~~~s~~~~~--------~~~~~~~~~~~~~i~~ 364 (662)
T 3azo_A 295 GMRWFAPLANGLIAVVHGKGAAVLGILDPESGE-LVDA-AGPWTEWAATLTVSGTR--------AVGVAASPRTAYEVVE 364 (662)
T ss_dssp TCCSEEECTTSCEEEEEBSSSCEEEEEETTTTE-EEEC-CSSCCEEEEEEEEETTE--------EEEEEEETTEEEEEEE
T ss_pred cCceEeEeCCCEEEEEEEcCccEEEEEECCCCc-EEEe-cCCCCeEEEEEecCCCE--------EEEEEcCCCCCCEEEE
Confidence 1456899999998888654767777 666665 4445 4577778777 665543 34455555554 455
Q ss_pred EeCCCCC
Q 013578 432 WLAPSLE 438 (440)
Q Consensus 432 w~~~~~~ 438 (440)
|++.+++
T Consensus 365 ~d~~~g~ 371 (662)
T 3azo_A 365 LDTVTGR 371 (662)
T ss_dssp EETTTCC
T ss_pred EECCCCc
Confidence 5655554
No 165
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.78 E-value=4.3e-18 Score=161.26 Aligned_cols=231 Identities=10% Similarity=0.037 Sum_probs=150.6
Q ss_pred CCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCC
Q 013578 139 GPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADG 218 (440)
Q Consensus 139 ~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (440)
.+|.+++|+|||+.|++++.... .+.+|........ . + ..+.. .......++||
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g--~~~lw~~~~g~~~----~---l----------t~~~~------~~~~~~~~spd- 75 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEG--SVNAYLYDGGETV----K---L----------NREPI------NSVLDPHYGVG- 75 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETT--EEEEEEEETTEEE----E---C----------CSSCC------SEECEECTTCS-
T ss_pred cchheeecCCCCCeEEEEEccCC--ceeEEEEcCCCcE----e---e----------ecccc------cccccccCCCC-
Confidence 57899999999999999887432 3444442211100 0 0 00000 01122344677
Q ss_pred CeEEEEeeC---CceEEEEeCCC---CceeeeeeCCCCcccEEEecCCCCe-EEEEecCCCEEEEEeEecCCCceeeeee
Q 013578 219 STIIASCSE---GTDISIWHGKT---GKLLGNVDTNQLKNNMAAISPNGRF-LAAAAFTADVKVWEIVYSKDGLVKAVTS 291 (440)
Q Consensus 219 ~~~l~s~~~---d~~i~vwd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 291 (440)
+ ++++++. +...++|.+.. +... .+... ......+|+|+|+. +++...++.+.+||+..++
T Consensus 76 ~-~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~--------- 143 (582)
T 3o4h_A 76 R-VILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGG--------- 143 (582)
T ss_dssp E-EEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE---------
T ss_pred e-EEEEeccCCCCcceEEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCc---------
Confidence 4 7776664 44455544332 3222 33222 23446788888864 3344455666799986553
Q ss_pred eeeeeccccceEEEEEcCCCCEEEEEeCC----CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC
Q 013578 292 VMQLKGHKSAVTWLCFAPNSEQIITASKD----GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG 367 (440)
Q Consensus 292 ~~~~~~h~~~v~~~~~~p~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 367 (440)
...+..+.. .+++|+|||++|++++.| +.|++||+.++... ....+...+..++|||||
T Consensus 144 ~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~---------------~l~~~~~~~~~~~~SpDG 206 (582)
T 3o4h_A 144 LRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR---------------VFDSGEGSFSSASISPGM 206 (582)
T ss_dssp EEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE---------------EECCSSCEEEEEEECTTS
T ss_pred EEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce---------------EeecCCCccccceECCCC
Confidence 222222333 789999999999988877 78999998865321 011334456889999999
Q ss_pred CEEEEec-CC--EEEEEEcCCccchhhhhccccCCeEEEE--------ecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578 368 KILAATH-GS--TLQWLSVETGKVLDTAEKAHEGEITCMA--------WAPKTIPMGNQQVSVLATSSVDKKVKLWLA 434 (440)
Q Consensus 368 ~~l~~~~-~~--~i~i~d~~~~~~~~~~~~~h~~~v~~v~--------~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~ 434 (440)
++|+++. ++ .|++||+.+++.. .+ .+|...+..++ |+||+ .++++++.||++++|++
T Consensus 207 ~~l~~~~~~~~~~i~~~d~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~spdg--------~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 207 KVTAGLETAREARLVTVDPRDGSVE-DL-ELPSKDFSSYRPTAITWLGYLPDG--------RLAVVARREGRSAVFID 274 (582)
T ss_dssp CEEEEEECSSCEEEEEECTTTCCEE-EC-CCSCSHHHHHCCSEEEEEEECTTS--------CEEEEEEETTEEEEEET
T ss_pred CEEEEccCCCeeEEEEEcCCCCcEE-Ec-cCCCcChhhhhhccccceeEcCCC--------cEEEEEEcCCcEEEEEE
Confidence 9999654 56 8999999999877 44 57777787778 99998 89999999999999998
No 166
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.78 E-value=1.4e-17 Score=150.02 Aligned_cols=295 Identities=13% Similarity=0.056 Sum_probs=172.8
Q ss_pred CcceeEEEEccCCCEEEEeeCC---CcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEe
Q 013578 91 GDSVTGLCFSSDGKCLATACAD---GVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYM 167 (440)
Q Consensus 91 ~~~V~~l~~s~dg~~l~t~s~d---g~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~ 167 (440)
...+.+++|+|||++|+....+ ..|.+|++.+++. .............+.|+|+++.|+.+..+. .+++
T Consensus 35 ~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~-----~~l~~~~~~~~~~~~~spdg~~l~~~~~~~---~l~~ 106 (396)
T 3c5m_A 35 RNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA-----VQLTEGKGDNTFGGFISTDERAFFYVKNEL---NLMK 106 (396)
T ss_dssp CCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE-----EECCCSSCBCTTTCEECTTSSEEEEEETTT---EEEE
T ss_pred ceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE-----EEeecCCCCccccceECCCCCEEEEEEcCC---cEEE
Confidence 3447889999999998877543 3677788776532 222222222334488999999998887663 5777
Q ss_pred eccccccccccccccCCCCCCceeeccccc----ccceeEEEeecccccccCCCCCeEEEEe----eCCceEEEEeCCCC
Q 013578 168 YGEEKAISTNEGKQQSKLPGPEIKWEHHKV----HDKRAILTLFGASATYGTADGSTIIASC----SEGTDISIWHGKTG 239 (440)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~s~----~~d~~i~vwd~~~~ 239 (440)
++........-.... .. |..... ........ .......++|+++.+++.. ..+..|++||+.++
T Consensus 107 ~d~~~~~~~~~~~~~----~~---~~~~g~~l~~~~~~~~~~-~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g 178 (396)
T 3c5m_A 107 VDLETLEEQVIYTVD----EE---WKGYGTWVANSDCTKLVG-IEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETG 178 (396)
T ss_dssp EETTTCCEEEEEECC----TT---EEEEEEEEECTTSSEEEE-EEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTC
T ss_pred EECCCCCcEEEEecc----cc---cCCCCCEEEeccCCcccc-ccccccccCCCCcceeeeeeccCCCcceEEEEECCCC
Confidence 765433111000000 00 100000 00000000 0001134577777333322 46678999999988
Q ss_pred ceeeeeeCCCCcccEEEecC-CCCeEEEEecC------CCEEEEEeEecCCCceeeeeeeeeeecc--ccceEEEEEcCC
Q 013578 240 KLLGNVDTNQLKNNMAAISP-NGRFLAAAAFT------ADVKVWEIVYSKDGLVKAVTSVMQLKGH--KSAVTWLCFAPN 310 (440)
Q Consensus 240 ~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~ 310 (440)
+..... .+...+..+.|+| +++.|+..+.+ ..|.+||+.... ...+..+ ...+..++|+|+
T Consensus 179 ~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---------~~~l~~~~~~~~~~~~~~spd 248 (396)
T 3c5m_A 179 ELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN---------VRKIKEHAEGESCTHEFWIPD 248 (396)
T ss_dssp CEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC---------CEESSCCCTTEEEEEEEECTT
T ss_pred cEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc---------eeEeeccCCCccccceEECCC
Confidence 765444 3455678899999 78877776654 357777753321 1222222 235788999999
Q ss_pred CCEEEEEeCC-----CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC-CCCEEEEec----------
Q 013578 311 SEQIITASKD-----GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS-DGKILAATH---------- 374 (440)
Q Consensus 311 ~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~---------- 374 (440)
|++|+..+.+ +.|++||+.++.... + ....+ .. +.|+| ||++++.+.
T Consensus 249 g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~--------l----~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~ 311 (396)
T 3c5m_A 249 GSAMAYVSYFKGQTDRVIYKANPETLENEE--------V----MVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADA 311 (396)
T ss_dssp SSCEEEEEEETTTCCEEEEEECTTTCCEEE--------E----EECCS----EE-EEEECSSSSEEEEEECCC-------
T ss_pred CCEEEEEecCCCCccceEEEEECCCCCeEE--------e----eeCCC----CC-CCccCCCCceEEEecCCcceeeccc
Confidence 9988777544 449999997653210 0 00111 12 78999 999887642
Q ss_pred -------CCEEEEEEcCCccchhhhhccccC-----------CeEEEEecCCCCCCCCCcceEEEEeeC-CCeEEEEe--
Q 013578 375 -------GSTLQWLSVETGKVLDTAEKAHEG-----------EITCMAWAPKTIPMGNQQVSVLATSSV-DKKVKLWL-- 433 (440)
Q Consensus 375 -------~~~i~i~d~~~~~~~~~~~~~h~~-----------~v~~v~~~~~~~~~~~~~~~~l~t~~~-Dg~i~vw~-- 433 (440)
+..|++||+.+++.. .+ ..|.. .+..++|+|++ +.|+.++. ++...+|.
T Consensus 312 ~~~~~~~~~~i~~~d~~~~~~~-~l-~~~~~~~~~~~~~~~~~~~~~~~s~dg--------~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 312 DSYNIENDPFLYVLNTKAKSAQ-KL-CKHSTSWDVLDGDRQITHPHPSFTPND--------DGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp ---CCCCCCEEEEEETTTTBCC-EE-EECCCCCCCBTTBSSTTCCCCEECTTS--------SEEEEEECTTSSCEEEEEE
T ss_pred cccccCCCCcEEEEecccCceE-Ec-cCCCCccccccccccCCCCCceEccCC--------CeEEEEecCCCCceEEEEE
Confidence 378999999888753 33 23443 25678999998 66666554 56555554
Q ss_pred CCCCC
Q 013578 434 APSLE 438 (440)
Q Consensus 434 ~~~~~ 438 (440)
+..++
T Consensus 382 ~~~~~ 386 (396)
T 3c5m_A 382 VPESY 386 (396)
T ss_dssp CCTTC
T ss_pred Ecccc
Confidence 44443
No 167
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.77 E-value=8.2e-16 Score=135.79 Aligned_cols=261 Identities=9% Similarity=0.066 Sum_probs=165.8
Q ss_pred cceeEEEEccCCCEEEEee---------CCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecC--
Q 013578 92 DSVTGLCFSSDGKCLATAC---------ADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNL-- 160 (440)
Q Consensus 92 ~~V~~l~~s~dg~~l~t~s---------~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~-- 160 (440)
..+..+++ ||++++... .++.|.+|++.++... .. ..+..++|+|||++|+.+..+.
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-----~l-----~~~~~~~~SpDg~~la~~~~~~~~ 82 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-----FI-----ENATMPRISPDGKKIAFMRANEEK 82 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-----EE-----ESCEEEEECTTSSEEEEEEEETTT
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-----Ec-----ccCCCeEECCCCCEEEEEEeccCC
Confidence 45677788 898887642 2667999998876421 11 4578899999999999887654
Q ss_pred CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeC-------------
Q 013578 161 SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSE------------- 227 (440)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~------------- 227 (440)
....+++++...... ........ .....++|+|+.++++...
T Consensus 83 ~~~~l~~~~~~~g~~------------------------~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~ 137 (347)
T 2gop_A 83 KVSEIWVADLETLSS------------------------KKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV 137 (347)
T ss_dssp TEEEEEEEETTTTEE------------------------EEEEEESE-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred CcceEEEEECCCCce------------------------EEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence 334566665433210 00011111 2334568899855544422
Q ss_pred -------------CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCC-------CEEEEEeEecCCCcee
Q 013578 228 -------------GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTA-------DVKVWEIVYSKDGLVK 287 (440)
Q Consensus 228 -------------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~ 287 (440)
...|++||+.+++.+..+.. . .+..++|+|+| +++++..++ ...||.+. ..
T Consensus 138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~----- 208 (347)
T 2gop_A 138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DG----- 208 (347)
T ss_dssp CCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TT-----
T ss_pred ceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CC-----
Confidence 35799999998876455544 3 78899999999 777776542 56777766 22
Q ss_pred eeeeeeeeeccccceEEEEEcCCCCEEEEEeCC--------CcEEEEecCccccccCCCCccccccccccCCCCCeeeee
Q 013578 288 AVTSVMQLKGHKSAVTWLCFAPNSEQIITASKD--------GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYD 359 (440)
Q Consensus 288 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 359 (440)
....+..+ ..+..+ +|+|++|+.++.+ ..|.+|| ++... .....+...+.
T Consensus 209 ---~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~--------------~l~~~~~~~~~ 266 (347)
T 2gop_A 209 ---KEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM--------------GILDEVDRGVG 266 (347)
T ss_dssp ---EEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE--------------ESSTTCCSEEE
T ss_pred ---ceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE--------------eccccCCcccC
Confidence 12223333 445544 9999998887754 3577777 22111 00112234466
Q ss_pred e-EEeCCCCCEEEEe-cCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeE-EEEeCC
Q 013578 360 R-LSLSSDGKILAAT-HGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKV-KLWLAP 435 (440)
Q Consensus 360 ~-~~~s~~g~~l~~~-~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i-~vw~~~ 435 (440)
. +.|+ |+ +++++ .++.+++| +.+++....+ .+.+.|.+++|+| . ++++++.++.. .+|.++
T Consensus 267 ~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~--~~~~~v~~~~~s~-~---------~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 267 QAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA--KGRHWIMGFDVDE-I---------VVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE--CSSSEEEEEEESS-S---------EEEEEECSSSCCEEEEES
T ss_pred CccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe--cCCCeEEeeeeeC-c---------EEEEEcCCCChHHheEeC
Confidence 5 8999 88 66665 48899999 7766553332 4577899999999 6 66666666665 788765
No 168
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.76 E-value=7.5e-17 Score=143.33 Aligned_cols=262 Identities=11% Similarity=0.058 Sum_probs=153.5
Q ss_pred cCcceeEEEEccCCCEEEEeeCCCcEEEEecC-CCCCcceeeEEecCCCCCCCceEEEccCCCeEE-EEeec------C-
Q 013578 90 HGDSVTGLCFSSDGKCLATACADGVIRVHKLD-DASSKSFKFLRINLPPGGPPTAVAFADNATSIV-VATHN------L- 160 (440)
Q Consensus 90 H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~-~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~-~~~~~------~- 160 (440)
+...+..++|+|||++|++++.+ .|.+|++. ++... ...... .. +.+..++|+|++++++ ..+.. .
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~--~~~~~~-~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 112 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV--HEASHP-IG-GHPRANDADTNTRAIFLLAAKQPPYAVYAN 112 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE--EEEEEE-CC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE--EeeEee-cC-CCCccEEECCCCCEEEEEEecCCcceeccc
Confidence 34578899999999999999988 99999997 44321 111111 11 2367799999999633 22210 0
Q ss_pred ----CcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeC
Q 013578 161 ----SGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHG 236 (440)
Q Consensus 161 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~ 236 (440)
....+.+|+........ ....... + .....+..+.++|+|+.++++...++.|++|++
T Consensus 113 ~~~~~~g~v~v~~~~~~g~~~------------~~~~~~~-~-----~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~ 174 (365)
T 1jof_A 113 PFYKFAGYGNVFSVSETGKLE------------KNVQNYE-Y-----QENTGIHGMVFDPTETYLYSADLTANKLWTHRK 174 (365)
T ss_dssp EESSSCCEEEEEEECTTCCEE------------EEEEEEE-C-----CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred eeecCCceEEEEccCCCCcCc------------ceEeeEE-e-----CCCCcceEEEECCCCCEEEEEcCCCCEEEEEEE
Confidence 12234444432100000 0000000 0 001123345568999844444445678999999
Q ss_pred C-CCcee--eeeeC--CCCcccEEEecCCCCeEEEEec-CCCEEEEEeEecCCCceee-eeeeeeee----cccc-----
Q 013578 237 K-TGKLL--GNVDT--NQLKNNMAAISPNGRFLAAAAF-TADVKVWEIVYSKDGLVKA-VTSVMQLK----GHKS----- 300 (440)
Q Consensus 237 ~-~~~~~--~~~~~--~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~-~~~~~~~~----~h~~----- 300 (440)
. +++.. ..+.. +...+..++|+|+|++|++++. ++.|.+|++.... +.... ...+..+. +|..
T Consensus 175 ~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~-g~~~~~~~~~~~~~~~~~g~~~~~~~~ 253 (365)
T 1jof_A 175 LASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT-HMPVYTHHSFPLIPPGIPDRDPETGKG 253 (365)
T ss_dssp CTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT-CCEEEEEEEEESSCTTCCCBCTTTSSB
T ss_pred CCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCC-CcEEEccceEEcCCCCcCCcccccccc
Confidence 8 67643 33332 2456788999999999988875 6889999885321 11110 11122221 2332
Q ss_pred -ceEEEE-EcCCCCEEEEEeCCC------cEEEEecC-ccccccCCCCccccccccccCCCCCeeeeeeEEeCC---CCC
Q 013578 301 -AVTWLC-FAPNSEQIITASKDG------TLRVWNIN-VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS---DGK 368 (440)
Q Consensus 301 -~v~~~~-~~p~~~~l~s~~~dg------~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~g~ 368 (440)
.+..++ |+|||++|++++.+. .|.+|++. ++... .... .. ..+......++|+| ||+
T Consensus 254 ~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~-------~~~~-~~---~~~~~~~~~~a~sp~~~dg~ 322 (365)
T 1jof_A 254 LYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE-------KQLF-LS---PTPTSGGHSNAVSPCPWSDE 322 (365)
T ss_dssp SEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE-------EEEE-EE---ECSSCCTTCCCEEECTTCTT
T ss_pred cccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE-------Eeee-ee---ecCCCCcccceecCCCcCCC
Confidence 588999 999999888766432 89999996 22110 0000 00 00111244689999 899
Q ss_pred EEEEec--CCEEEEEEcCCc
Q 013578 369 ILAATH--GSTLQWLSVETG 386 (440)
Q Consensus 369 ~l~~~~--~~~i~i~d~~~~ 386 (440)
+|+++. ++.|.+|++...
T Consensus 323 ~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 323 WMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEECSSSCEEEEEEEETT
T ss_pred EEEEEEcCCCeEEEEEEchh
Confidence 998875 489999998765
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.75 E-value=2.4e-16 Score=139.32 Aligned_cols=279 Identities=10% Similarity=0.074 Sum_probs=172.9
Q ss_pred cccccccCcceeEEEEccCCCEEEEee----------CCCcEEEEecCCCCCcceeeEEecC---CCCCCCceEEEccCC
Q 013578 84 VNTLKGHGDSVTGLCFSSDGKCLATAC----------ADGVIRVHKLDDASSKSFKFLRINL---PPGGPPTAVAFADNA 150 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s----------~dg~v~vW~~~~~~~~~~~~~~~~~---~~~~~v~~v~~~~~~ 150 (440)
+.++..+..+ .++|+|||++|++++ .+++|.+||..+.+.. ..+.... .++..+..++|+|+|
T Consensus 44 ~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~--~~i~~~~~~~~~g~~p~~i~~spdg 119 (361)
T 2oiz_A 44 LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFE--KEISLPPKRVQGLNYDGLFRQTTDG 119 (361)
T ss_dssp EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEE--EEEEECTTBCCBCCCGGGEEECTTS
T ss_pred EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEE--EEEEcCccccccCCCcceEEECCCC
Confidence 3455556555 899999999999886 3678999998765422 1222111 123567899999999
Q ss_pred CeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCce
Q 013578 151 TSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTD 230 (440)
Q Consensus 151 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 230 (440)
++++++.... ...+.+++.......... + .. . ........|++...+++.+.||.
T Consensus 120 ~~l~v~n~~~-~~~v~v~d~~~~~~~~~~-----i-------~~-----~-------~~~~v~~~p~~~~~~~~~~~dg~ 174 (361)
T 2oiz_A 120 KFIVLQNASP-ATSIGIVDVAKGDYVEDV-----T-------AA-----A-------GCWSVIPQPNRPRSFMTICGDGG 174 (361)
T ss_dssp SEEEEEEESS-SEEEEEEETTTTEEEEEE-----G-------GG-----T-------TEEEEEECTTSSSEEEEEETTSS
T ss_pred CEEEEECCCC-CCeEEEEECCCCcEEEEE-----e-------cC-----C-------CcceeEEcCCCCeeEEEECCCCc
Confidence 9999886531 245666655443111000 0 00 0 00001235666557788889999
Q ss_pred EEEEeCCC-Cceee------eeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccc----
Q 013578 231 ISIWHGKT-GKLLG------NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK---- 299 (440)
Q Consensus 231 i~vwd~~~-~~~~~------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~---- 299 (440)
+.+|+... ++... .+.....+ ..+.+++++..++..+.++.+.++|+..........+........+.
T Consensus 175 ~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p 253 (361)
T 2oiz_A 175 LLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVP 253 (361)
T ss_dssp EEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEE
T ss_pred EEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccccccc
Confidence 99998865 55441 12222222 23345677878888888999999997533210000000000000000
Q ss_pred cceEEEEEcCCCCEEEEEeC-----------CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC
Q 013578 300 SAVTWLCFAPNSEQIITASK-----------DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK 368 (440)
Q Consensus 300 ~~v~~~~~~p~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 368 (440)
.....++|+|++..++.+.. .+.|.+||+.+.+.+.. ++ .+. ...++|+|||+
T Consensus 254 ~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~-------i~-------~~~--p~~ia~spdg~ 317 (361)
T 2oiz_A 254 GGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR-------IP-------GRD--ALSMTIDQQRN 317 (361)
T ss_dssp CCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE-------EE-------CTT--CCEEEEETTTT
T ss_pred CCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE-------Ee-------cCC--eeEEEECCCCC
Confidence 11223789999888776543 34799999987654321 11 111 56899999999
Q ss_pred EEEEecCCEEEEEEcCCc--cchhhhhccccCCeEEEEecCCC
Q 013578 369 ILAATHGSTLQWLSVETG--KVLDTAEKAHEGEITCMAWAPKT 409 (440)
Q Consensus 369 ~l~~~~~~~i~i~d~~~~--~~~~~~~~~h~~~v~~v~~~~~~ 409 (440)
+|+++.++.|.+||..++ +.+..+ ..+......++++|+|
T Consensus 318 ~l~v~n~~~v~v~D~~t~~l~~~~~i-~~~G~~P~~~~~~p~G 359 (361)
T 2oiz_A 318 LMLTLDGGNVNVYDISQPEPKLLRTI-EGAAEASLQVQFHPVG 359 (361)
T ss_dssp EEEEECSSCEEEEECSSSSCEEEEEE-TTSCSSEEEEEECCCS
T ss_pred EEEEeCCCeEEEEECCCCcceeeEEe-ccCCCCcEEEEecCCC
Confidence 998877799999999999 888876 2577788999999997
No 170
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.74 E-value=9.7e-16 Score=148.40 Aligned_cols=264 Identities=13% Similarity=0.061 Sum_probs=168.9
Q ss_pred ccCcceeEEEEccCCCEEEEeeCCC-----cEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578 89 GHGDSVTGLCFSSDGKCLATACADG-----VIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC 163 (440)
Q Consensus 89 ~H~~~V~~l~~s~dg~~l~t~s~dg-----~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~ 163 (440)
+|...+..++|||||++||.++.++ .|++||+.+++..... .. ...+..++|+||++.|+.+..+....
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~-----~~-~~~~~~~~wspDg~~l~~~~~~~~~~ 195 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-----LE-RVKFSCMAWTHDGKGMFYNAYPQQDG 195 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-----EE-EECSCCEEECTTSSEEEEEECCCCSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc-----cc-CcccceEEEEeCCCEEEEEEECCccc
Confidence 5666899999999999999776543 8999999887532211 11 12367899999999999887652110
Q ss_pred eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce--
Q 013578 164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL-- 241 (440)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-- 241 (440)
. . ++. .-.......|++|++.+++.
T Consensus 196 ~--------~-------------------------------------------~~~--~~~~~~~~~v~~~~l~t~~~~~ 222 (710)
T 2xdw_A 196 K--------S-------------------------------------------DGT--ETSTNLHQKLYYHVLGTDQSED 222 (710)
T ss_dssp C--------C-------------------------------------------SSS--CCCCCCCCEEEEEETTSCGGGC
T ss_pred c--------c-------------------------------------------ccc--ccccCCCCEEEEEECCCCcccc
Confidence 0 0 000 00001234589999987752
Q ss_pred --eeeeeCCCCcccEEEecCCCCeEEEEec-----CCCEEEEEeEe------cCCCceeeeeeeeeeeccccceEEEEEc
Q 013578 242 --LGNVDTNQLKNNMAAISPNGRFLAAAAF-----TADVKVWEIVY------SKDGLVKAVTSVMQLKGHKSAVTWLCFA 308 (440)
Q Consensus 242 --~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~i~d~~~------~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 308 (440)
+.....+...+..+.|+|||++|+.++. +..|++||+.. +.. ....+..+...+.. .|+
T Consensus 223 ~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-------~~~~l~~~~~~~~~-~~s 294 (710)
T 2xdw_A 223 ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL-------KWVKLIDNFEGEYD-YVT 294 (710)
T ss_dssp EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-------CCEEEECSSSSCEE-EEE
T ss_pred eEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc-------ceEEeeCCCCcEEE-EEe
Confidence 2222223344668899999999998875 56789999864 210 23344556555555 488
Q ss_pred CCCCEEEEEeCC----CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CC--EEEEE
Q 013578 309 PNSEQIITASKD----GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GS--TLQWL 381 (440)
Q Consensus 309 p~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~--~i~i~ 381 (440)
|+|..|+..+.+ +.|.+||+.++... ....+ .. ......+..++|++++.++++.. ++ .|++|
T Consensus 295 ~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~-----~~~~l----~~-~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~ 364 (710)
T 2xdw_A 295 NEGTVFTFKTNRHSPNYRLINIDFTDPEES-----KWKVL----VP-EHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLH 364 (710)
T ss_dssp EETTEEEEEECTTCTTCEEEEEETTSCCGG-----GCEEE----EC-CCSSCEEEEEEEETTTEEEEEEEETTEEEEEEE
T ss_pred ccCCEEEEEECCCCCCCEEEEEeCCCCCcc-----cceec----cC-CCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEE
Confidence 899887766643 35999998754210 00111 11 11112466788887777777754 55 57778
Q ss_pred EcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEE-EeeC---CCeEEEEeCCCCC
Q 013578 382 SVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLA-TSSV---DKKVKLWLAPSLE 438 (440)
Q Consensus 382 d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~-t~~~---Dg~i~vw~~~~~~ 438 (440)
++.+|+.+..+ ..+.+.+..+.++|++ ..|+ +.++ .++|.+||+.+++
T Consensus 365 ~~~~g~~~~~l-~~~~~~v~~~~~s~d~--------~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 365 DLATGALLKIF-PLEVGSVVGYSGQKKD--------TEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ETTTCCEEEEE-CCCSSEEEEEECCTTC--------SEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ECCCCCEEEec-CCCCceEEEEecCCCC--------CEEEEEEeCCCCCCEEEEEECCCCc
Confidence 88788766666 3567789999999986 4443 3333 5789999998776
No 171
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.73 E-value=1.9e-16 Score=140.00 Aligned_cols=153 Identities=12% Similarity=0.168 Sum_probs=109.0
Q ss_pred CCeEEEEeeCCceEEEEeCCCCceeeeeeCCC-CcccEEEecCCCCeEEEE-ecCCCEEEEEeEecCCCceeeeeeeeee
Q 013578 218 GSTIIASCSEGTDISIWHGKTGKLLGNVDTNQ-LKNNMAAISPNGRFLAAA-AFTADVKVWEIVYSKDGLVKAVTSVMQL 295 (440)
Q Consensus 218 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 295 (440)
+..++++++.++.|++||+.+++.+..+..+. ..+..++|+|++++++++ ..++.|.+||+..++ ....+
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~--------~~~~~ 81 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK--------NTFHA 81 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE--------EEEEE
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc--------EEEEE
Confidence 34488999999999999999999888877543 257889999999876554 468899999986443 22233
Q ss_pred ec-c-----ccceEEEEEcCCCCEEEEEeCC------------CcEEEEecCccccccCCCCccccccccccCCCCCeee
Q 013578 296 KG-H-----KSAVTWLCFAPNSEQIITASKD------------GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQ 357 (440)
Q Consensus 296 ~~-h-----~~~v~~~~~~p~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (440)
.. + ...+.+++|+|+|++|++++.+ +.|.+||+.++..... .... . +...
T Consensus 82 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~----~~~~-----~---~~~~ 149 (349)
T 1jmx_B 82 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP----VRTF-----P---MPRQ 149 (349)
T ss_dssp ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC----SEEE-----E---CCSS
T ss_pred EcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccce----eeec-----c---CCCc
Confidence 22 1 2347889999999999988865 8999999987533211 1111 0 1113
Q ss_pred eeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhh
Q 013578 358 YDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTA 392 (440)
Q Consensus 358 v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~ 392 (440)
+.+++|+|+|+ ++++ ++.|++||..+++....+
T Consensus 150 ~~~~~~s~dg~-l~~~-~~~i~~~d~~~~~~~~~~ 182 (349)
T 1jmx_B 150 VYLMRAADDGS-LYVA-GPDIYKMDVKTGKYTVAL 182 (349)
T ss_dssp CCCEEECTTSC-EEEE-SSSEEEECTTTCCEEEEE
T ss_pred ccceeECCCCc-EEEc-cCcEEEEeCCCCceeccc
Confidence 67899999999 4444 334999999988866544
No 172
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.72 E-value=2.4e-15 Score=132.90 Aligned_cols=290 Identities=10% Similarity=0.028 Sum_probs=172.2
Q ss_pred CCCEEEEee------CCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeec-------CCcceEEee
Q 013578 102 DGKCLATAC------ADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHN-------LSGCSLYMY 168 (440)
Q Consensus 102 dg~~l~t~s------~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~-------~~~~~~~~~ 168 (440)
++++++... .|+.|.+||..+++.. ........ . .++|+|++++++++... .....+.+|
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~-----~~i~~g~~-p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~ 86 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFL-----GMVPTAFN-G-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVW 86 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEE-----EEEECCEE-E-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEE
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEE-----EEecCCCC-C-ceEECCCCCEEEEEEecccccccCCCCCEEEEE
Confidence 555555543 4789999998776421 11112223 3 89999999999988641 112346666
Q ss_pred ccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeC-CceEEEEeCCCCceeee-ee
Q 013578 169 GEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSE-GTDISIWHGKTGKLLGN-VD 246 (440)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~-~~ 246 (440)
+............ ...+ ......+..+.++|+|+.++++... ++.|.+||+.+++.+.. +.
T Consensus 87 d~~t~~~~~~i~~-------------~~~~----~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~ 149 (361)
T 2oiz_A 87 DADKLTFEKEISL-------------PPKR----VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA 149 (361)
T ss_dssp ETTTCCEEEEEEE-------------CTTB----CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG
T ss_pred ECcCCcEEEEEEc-------------Cccc----cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec
Confidence 5443211000000 0000 0001234556679999944444433 68899999999988877 65
Q ss_pred CCCCcccEEEecCCC-CeEEEEecCCCEEEEEeEecCCCcee-eeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEE
Q 013578 247 TNQLKNNMAAISPNG-RFLAAAAFTADVKVWEIVYSKDGLVK-AVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLR 324 (440)
Q Consensus 247 ~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~ 324 (440)
... ...+.+.|++ ..+++.+.||.+.+|++.... ... .......+..+..++ .+.++|++..++..+.++.|.
T Consensus 150 ~~~--~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g--~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~ 224 (361)
T 2oiz_A 150 AAG--CWSVIPQPNRPRSFMTICGDGGLLTINLGEDG--KVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVY 224 (361)
T ss_dssp GTT--EEEEEECTTSSSEEEEEETTSSEEEEEECTTS--SEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEE
T ss_pred CCC--cceeEEcCCCCeeEEEECCCCcEEEEEECCCC--cEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEE
Confidence 422 1224566765 677888899999999875322 111 000001222222222 334467787777788899999
Q ss_pred EEecCccccccCCCCcccccccc---ccCCCCCeeeeeeEEeCCCCCEEEEec------------CCEEEEEEcCCccch
Q 013578 325 VWNINVRYHLDEDPKTLKVLPIP---LLDSNGATLQYDRLSLSSDGKILAATH------------GSTLQWLSVETGKVL 389 (440)
Q Consensus 325 iwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~~~~------------~~~i~i~d~~~~~~~ 389 (440)
++|+...... ....+... .............++|+|+++.+.++. .+.|.+||+.+++.+
T Consensus 225 v~d~~~~~~~-----~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v 299 (361)
T 2oiz_A 225 SADFSGDEVK-----VDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV 299 (361)
T ss_dssp EEECSSSSCE-----EEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE
T ss_pred EEEecCCCce-----ecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE
Confidence 9998643211 00000000 000000011122378999988666532 248999999999999
Q ss_pred hhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 390 DTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 390 ~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
..+. .+. +.+++|+|++ ++|++++. +.|.+||+.++
T Consensus 300 ~~i~-~~~--p~~ia~spdg--------~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 300 ARIP-GRD--ALSMTIDQQR--------NLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp EEEE-CTT--CCEEEEETTT--------TEEEEECS-SCEEEEECSSS
T ss_pred EEEe-cCC--eeEEEECCCC--------CEEEEeCC-CeEEEEECCCC
Confidence 8884 444 9999999998 78888776 99999999887
No 173
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.72 E-value=4e-15 Score=128.15 Aligned_cols=245 Identities=11% Similarity=0.102 Sum_probs=159.8
Q ss_pred cccccccCcceeEEEEccCCC-EEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 84 VNTLKGHGDSVTGLCFSSDGK-CLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg~-~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
+..+..+.....+++|+|+|+ +++++..++.|..|+..++ . ... ..+...+.+++++++++
T Consensus 20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~---~~~---~~~~~~~~~l~~~~dg~----------- 81 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L---SPE---MHPSHHQNGHCLNKQGH----------- 81 (296)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E---EEE---ESSCSSEEEEEECTTCC-----------
T ss_pred EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e---EEE---ECCCCCcceeeECCCCc-----------
Confidence 455666777889999999998 7888888999999998764 1 111 12334566777776654
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL 242 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 242 (440)
++++...++.|.+||..+++..
T Consensus 82 ----------------------------------------------------------l~v~~~~~~~i~~~d~~~g~~~ 103 (296)
T 3e5z_A 82 ----------------------------------------------------------LIACSHGLRRLERQREPGGEWE 103 (296)
T ss_dssp ----------------------------------------------------------EEEEETTTTEEEEECSTTCCEE
T ss_pred ----------------------------------------------------------EEEEecCCCeEEEEcCCCCcEE
Confidence 3444444566888888777654
Q ss_pred eeeeC----CCCcccEEEecCCCCeEEE----Eec-----------CCCEEEEEeEecCCCceeeeeeeeeeeccccceE
Q 013578 243 GNVDT----NQLKNNMAAISPNGRFLAA----AAF-----------TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVT 303 (440)
Q Consensus 243 ~~~~~----~~~~v~~~~~s~~~~~l~~----~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~ 303 (440)
..... ....+..++++|+|+++++ |+. .+.-.||.+.... ....+..+.....
T Consensus 104 ~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g--------~~~~~~~~~~~~~ 175 (296)
T 3e5z_A 104 SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDG--------TLSAPIRDRVKPN 175 (296)
T ss_dssp EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTS--------CEEEEECCCSSEE
T ss_pred EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCC--------CEEEeecCCCCCc
Confidence 33221 1224567999999998887 331 0122455543321 1223344556778
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecC-ccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEE
Q 013578 304 WLCFAPNSEQIITASKDGTLRVWNIN-VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLS 382 (440)
Q Consensus 304 ~~~~~p~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d 382 (440)
.++|+|+++.|++.+.++.|.+||+. .+.... ....+ ......+..++++++|+++++. ++.|.+|+
T Consensus 176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~----~~~~~-------~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~ 243 (296)
T 3e5z_A 176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEY----QGVHF-------TVEPGKTDGLRVDAGGLIWASA-GDGVHVLT 243 (296)
T ss_dssp EEEECTTSCEEEEETTTTEEEEEEECSSSCEEE----EEEEE-------CCSSSCCCSEEEBTTSCEEEEE-TTEEEEEC
T ss_pred cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcC----CCeEe-------eCCCCCCCeEEECCCCCEEEEc-CCeEEEEC
Confidence 99999999988777788999999986 221100 00011 0112234579999999987777 89999999
Q ss_pred cCCccchhhhhccccCCeEEEEe-cCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 383 VETGKVLDTAEKAHEGEITCMAW-APKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 383 ~~~~~~~~~~~~~h~~~v~~v~~-~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
.. ++.+..+ ..+.. +++++| .|++ ..|+.++.++ +.-+++.+
T Consensus 244 ~~-g~~~~~~-~~~~~-~~~~~f~~~d~--------~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 244 PD-GDELGRV-LTPQT-TSNLCFGGPEG--------RTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp TT-SCEEEEE-ECSSC-CCEEEEESTTS--------CEEEEEETTE-EEEEECSC
T ss_pred CC-CCEEEEE-ECCCC-ceeEEEECCCC--------CEEEEEcCCe-EEEEEccc
Confidence 86 7766666 35556 999999 5776 6777777664 44444444
No 174
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.72 E-value=5.3e-16 Score=149.81 Aligned_cols=261 Identities=12% Similarity=0.027 Sum_probs=158.2
Q ss_pred cccCcceeEEEEccCCCEEE-----EeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 88 KGHGDSVTGLCFSSDGKCLA-----TACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 88 ~~H~~~V~~l~~s~dg~~l~-----t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
++|...+.+++|||||++|| .|+.+.+|++||+.+++... ..... ......++|+||++.|+.++.+...
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~----~~~~~-~~~~~~~~wspDg~~l~~~~~d~~~ 191 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK----VDVIE-GGKYATPKWTPDSKGFYYEWLPTDP 191 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS----SCCBS-CCTTCCCEECTTSSEEEEEECCCCT
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC----CcccC-cccccceEEecCCCEEEEEEecCCC
Confidence 36777899999999999999 45556789999999875320 00011 1123689999999998887765210
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc--
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK-- 240 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-- 240 (440)
. . . .........|++|++.+++
T Consensus 192 ~---------~---------------------------------------------~--~~~~~~~~~v~~~~l~t~~~~ 215 (695)
T 2bkl_A 192 S---------I---------------------------------------------K--VDERPGYTTIRYHTLGTEPSK 215 (695)
T ss_dssp T---------S---------------------------------------------C--GGGGGGGCEEEEEETTSCGGG
T ss_pred C---------C---------------------------------------------c--cccCCCCCEEEEEECCCCchh
Confidence 0 0 0 0000123448999988775
Q ss_pred --eeeeeeCCCCcccEEEecCCCCeEEEEecCC----CEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEE
Q 013578 241 --LLGNVDTNQLKNNMAAISPNGRFLAAAAFTA----DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQI 314 (440)
Q Consensus 241 --~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l 314 (440)
.+.....+...+..+.|+|||++|+.++.++ .|++|+...+ ....+..+...+....+ ++|.++
T Consensus 216 ~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~---------~~~~l~~~~~~~~~~~~-~~g~l~ 285 (695)
T 2bkl_A 216 DTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK---------DFRLLVKGVGAKYEVHA-WKDRFY 285 (695)
T ss_dssp CEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS---------SCEEEEECSSCCEEEEE-ETTEEE
T ss_pred ceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC---------ceEEeecCCCceEEEEe-cCCcEE
Confidence 2333333445677899999999999887665 4555532111 13334445556666666 566644
Q ss_pred EEEe---CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcC-Cccch
Q 013578 315 ITAS---KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVE-TGKVL 389 (440)
Q Consensus 315 ~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~-~~~~~ 389 (440)
+... .++.|.+||+.++... .... +. .......+..++|+ ++.++++.. ++..++|... +++..
T Consensus 286 ~~s~~~~~~~~l~~~d~~~~~~~-----~~~~----l~-~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~ 354 (695)
T 2bkl_A 286 VLTDEGAPRQRVFEVDPAKPARA-----SWKE----IV-PEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPV 354 (695)
T ss_dssp EEECTTCTTCEEEEEBTTBCSGG-----GCEE----EE-CCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEE
T ss_pred EEECCCCCCCEEEEEeCCCCCcc-----CCeE----Ee-cCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCee
Confidence 4443 2578999998754210 0010 01 11112346677887 666666654 7777666544 35544
Q ss_pred hhhhccccCCeEEEEecCCCCCCCCCcceEEE-Eee---CCCeEEEEeCCCCC
Q 013578 390 DTAEKAHEGEITCMAWAPKTIPMGNQQVSVLA-TSS---VDKKVKLWLAPSLE 438 (440)
Q Consensus 390 ~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~-t~~---~Dg~i~vw~~~~~~ 438 (440)
..+...+.+.|..++++|++ ..|+ +.+ ..++|++||+.+++
T Consensus 355 ~~l~~~~~~~v~~~~~s~d~--------~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 355 RTVQLPGVGAASNLMGLEDL--------DDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EECCCSSSSEECCCBSCTTC--------SEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEecCCCCeEEEEeecCCCC--------CEEEEEEcCCCCCCEEEEEECCCCc
Confidence 44432236678889999986 4444 332 35789999998765
No 175
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.71 E-value=6e-15 Score=125.25 Aligned_cols=240 Identities=8% Similarity=-0.016 Sum_probs=157.1
Q ss_pred ceeEEEEccCCCEEE-EeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccc
Q 013578 93 SVTGLCFSSDGKCLA-TACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEE 171 (440)
Q Consensus 93 ~V~~l~~s~dg~~l~-t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~ 171 (440)
...+++++++|++++ +.+.++.|.+|+..+.... .........+.++++.++++
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~p~~i~~~~~g~-------------------- 79 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-----VLPFNGLYQPQGLAVDGAGT-------------------- 79 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----E-----ECCCCSCCSCCCEEECTTCC--------------------
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccc-----eEeeCCcCCcceeEECCCCC--------------------
Confidence 678999999999777 5577889999987543211 11112223456666665544
Q ss_pred cccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCc
Q 013578 172 KAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLK 251 (440)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 251 (440)
++++.. ++.|.+||................
T Consensus 80 -------------------------------------------------l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~ 109 (270)
T 1rwi_B 80 -------------------------------------------------VYVTDF-NNRVVTLAAGSNNQTVLPFDGLNY 109 (270)
T ss_dssp -------------------------------------------------EEEEET-TTEEEEECTTCSCCEECCCCSCSS
T ss_pred -------------------------------------------------EEEEcC-CCEEEEEeCCCceEeeeecCCcCC
Confidence 333333 667888887654432221122245
Q ss_pred ccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q 013578 252 NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVR 331 (440)
Q Consensus 252 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~ 331 (440)
+..++++++|+++++...++.|.+|+..... ...........+.+++++|+|+++++...++.|.+||....
T Consensus 110 p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~ 181 (270)
T 1rwi_B 110 PEGLAVDTQGAVYVADRGNNRVVKLAAGSKT--------QTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN 181 (270)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTTCCS--------CEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred CcceEECCCCCEEEEECCCCEEEEEECCCce--------eEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence 7889999999977777778889998642211 11111223346788999999997777777889999998754
Q ss_pred ccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCC
Q 013578 332 YHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTI 410 (440)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~ 410 (440)
..... ..........++++++|.++++.. ++.|.+|+.......... ..+...+.++++++++
T Consensus 182 ~~~~~--------------~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g- 245 (270)
T 1rwi_B 182 NQVVL--------------PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP-FTGLNTPLAVAVDSDR- 245 (270)
T ss_dssp CEEEC--------------CCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECC-CCSCSCEEEEEECTTC-
T ss_pred ceEee--------------cccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeec-cCCCCCceeEEECCCC-
Confidence 32110 001113356899999998777654 789999998765443322 2344678999999998
Q ss_pred CCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 411 PMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 411 ~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
+++++...++.|+++++...+
T Consensus 246 -------~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 246 -------TVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp -------CEEEEEGGGTEEEEECCCGGG
T ss_pred -------CEEEEECCCCEEEEEcCCCcc
Confidence 788888899999999987654
No 176
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.70 E-value=1.7e-14 Score=126.57 Aligned_cols=246 Identities=13% Similarity=0.096 Sum_probs=152.6
Q ss_pred ccccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 83 DVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
....+.+|...+.+++|+++|++++++..++.|.+||..++... .....+...+.+++|+++++.+++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~-----~~~~~~~~~~~~i~~~~dg~l~v~------- 103 (333)
T 2dg1_A 36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK-----RPFVSHKANPAAIKIHKDGRLFVC------- 103 (333)
T ss_dssp EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-----EEEECSSSSEEEEEECTTSCEEEE-------
T ss_pred eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE-----EEeeCCCCCcceEEECCCCcEEEE-------
Confidence 34566777788899999999998888888999999998765422 111133456788888877653332
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCC----ceEEEEeCCC
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEG----TDISIWHGKT 238 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d----~~i~vwd~~~ 238 (440)
...+ +.|.+||..+
T Consensus 104 --------------------------------------------------------------~~~~~~~~~~i~~~d~~~ 121 (333)
T 2dg1_A 104 --------------------------------------------------------------YLGDFKSTGGIFAATENG 121 (333)
T ss_dssp --------------------------------------------------------------ECTTSSSCCEEEEECTTS
T ss_pred --------------------------------------------------------------eCCCCCCCceEEEEeCCC
Confidence 2222 4688888877
Q ss_pred Cceeeeee--CCCCcccEEEecCCCCeEEEEecC----CCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCC
Q 013578 239 GKLLGNVD--TNQLKNNMAAISPNGRFLAAAAFT----ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSE 312 (440)
Q Consensus 239 ~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 312 (440)
++....+. .....+..++++|+|+++++...+ +...||.+.... + ....+..+...+.+++|+|+++
T Consensus 122 ~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~-~------~~~~~~~~~~~~~~i~~~~dg~ 194 (333)
T 2dg1_A 122 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-R------TVTPIIQNISVANGIALSTDEK 194 (333)
T ss_dssp CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-C------CEEEEEEEESSEEEEEECTTSS
T ss_pred CEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCC-C------EEEEeecCCCcccceEECCCCC
Confidence 65543332 233467889999999877765431 234555553221 0 1111222334578999999998
Q ss_pred EEE-EEeCCCcEEEEecCcc-ccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccch
Q 013578 313 QII-TASKDGTLRVWNINVR-YHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVL 389 (440)
Q Consensus 313 ~l~-s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~ 389 (440)
.|+ +.+.++.|.+||+++. ..... ... . ......++ ..+..++++++|+++++.. ++.|.+||. +++.+
T Consensus 195 ~l~v~~~~~~~i~~~d~~~~g~~~~~----~~~-~-~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~ 266 (333)
T 2dg1_A 195 VLWVTETTANRLHRIALEDDGVTIQP----FGA-T-IPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPI 266 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSSSEEE----EEE-E-EEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEE
T ss_pred EEEEEeCCCCeEEEEEecCCCcCccc----ccc-e-EEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEE
Confidence 664 4456789999998631 11100 000 0 00001111 2456799999999777654 689999998 45555
Q ss_pred hhhhcccc------CCeEEEEecCCCCCCCCCcceEEEEeeCC
Q 013578 390 DTAEKAHE------GEITCMAWAPKTIPMGNQQVSVLATSSVD 426 (440)
Q Consensus 390 ~~~~~~h~------~~v~~v~~~~~~~~~~~~~~~~l~t~~~D 426 (440)
..+. .+. ..+.+++|+|++ ..|+.++.+
T Consensus 267 ~~~~-~~~~~~g~~~~~~~~~~~~dg--------~~L~v~~~~ 300 (333)
T 2dg1_A 267 GQIL-IPGRDEGHMLRSTHPQFIPGT--------NQLIICSND 300 (333)
T ss_dssp EEEE-CTTGGGTCSCBCCEEEECTTS--------CEEEEEEEC
T ss_pred EEEE-cCCCccccccCcceEEECCCC--------CEEEEEeCc
Confidence 4442 222 268999999986 455554444
No 177
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.69 E-value=1.9e-15 Score=135.62 Aligned_cols=242 Identities=8% Similarity=-0.008 Sum_probs=150.5
Q ss_pred eEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEE
Q 013578 143 AVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTII 222 (440)
Q Consensus 143 ~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 222 (440)
..+|+|||++|+.++.......+++++............ +. .......++|||+ .|
T Consensus 40 ~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~----------------~~-------~~~~~~~~spdg~-~l 95 (388)
T 3pe7_A 40 QKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG----------------RG-------DNTFGGFLSPDDD-AL 95 (388)
T ss_dssp SCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCS----------------SC-------BCSSSCEECTTSS-EE
T ss_pred CccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeC----------------CC-------CCccceEEcCCCC-EE
Confidence 378999999999998754455677777554321110000 00 0001234589999 77
Q ss_pred EEeeCCceEEEEeCCCCceeeeeeCCCCcccEE--EecCCCCeEEEEe----------------------cCCCEEEEEe
Q 013578 223 ASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMA--AISPNGRFLAAAA----------------------FTADVKVWEI 278 (440)
Q Consensus 223 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~~~~----------------------~dg~i~i~d~ 278 (440)
+.++.++.|++||+.+++....+..+...+... .+++++++++... .+..|.+||+
T Consensus 96 ~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 175 (388)
T 3pe7_A 96 FYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDL 175 (388)
T ss_dssp EEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEET
T ss_pred EEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEEC
Confidence 777788899999999998776666555444333 3589999887432 3456888887
Q ss_pred EecCCCceeeeeeeeeeeccccceEEEEEcC-CCCEEEEEeCC------CcEEEEecCccccccCCCCccccccccccCC
Q 013578 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP-NSEQIITASKD------GTLRVWNINVRYHLDEDPKTLKVLPIPLLDS 351 (440)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 351 (440)
..++ ...+..+...+..++|+| +|+.|+..+.+ ..|.++|+...... .+ ..
T Consensus 176 ~~g~---------~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~--------~l-----~~ 233 (388)
T 3pe7_A 176 KTGE---------STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR--------KV-----KT 233 (388)
T ss_dssp TTCC---------EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE--------ES-----CC
T ss_pred CCCc---------eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE--------Ee-----ee
Confidence 5543 333445667789999999 99998877753 36777777643211 00 01
Q ss_pred CCCeeeeeeEEeCCCCCEEEEec---CC---EEEEEEcCCccchhhhh-ccccC---CeEEEEecCCCCCCCCCcceEEE
Q 013578 352 NGATLQYDRLSLSSDGKILAATH---GS---TLQWLSVETGKVLDTAE-KAHEG---EITCMAWAPKTIPMGNQQVSVLA 421 (440)
Q Consensus 352 ~~~~~~v~~~~~s~~g~~l~~~~---~~---~i~i~d~~~~~~~~~~~-~~h~~---~v~~v~~~~~~~~~~~~~~~~l~ 421 (440)
......+..++|+|||+.|+... ++ .|++||+.+++...... .++.. ....+.|+||+ +.|+
T Consensus 234 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg--------~~l~ 305 (388)
T 3pe7_A 234 HAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDG--------SDAP 305 (388)
T ss_dssp CCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEE--------CCC-
T ss_pred CCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCC--------Ccce
Confidence 11113466789999999776532 22 49999999987432211 11110 12224799998 5565
Q ss_pred Ee---------eCCCeEEEEeCCCCC
Q 013578 422 TS---------SVDKKVKLWLAPSLE 438 (440)
Q Consensus 422 t~---------~~Dg~i~vw~~~~~~ 438 (440)
.. ..+..|++|++.+++
T Consensus 306 ~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 306 VDVQDDSGYKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp -----------CCCCEEEEEETTTTE
T ss_pred eEeeeccccccCCCCEEEEEeccCCc
Confidence 43 456789999998764
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.69 E-value=4.2e-15 Score=143.11 Aligned_cols=209 Identities=11% Similarity=0.011 Sum_probs=127.1
Q ss_pred cccccccCccee---------EEEEc--cCCCE-EEEeeC-CCcEEEEecC--C-CCCcceeeEEecCC-----CCCCCc
Q 013578 84 VNTLKGHGDSVT---------GLCFS--SDGKC-LATACA-DGVIRVHKLD--D-ASSKSFKFLRINLP-----PGGPPT 142 (440)
Q Consensus 84 ~~~l~~H~~~V~---------~l~~s--~dg~~-l~t~s~-dg~v~vW~~~--~-~~~~~~~~~~~~~~-----~~~~v~ 142 (440)
.+.+..|...+. ...|+ |||++ |+.++. +..|.+|++. . +.. .. ... +...+.
T Consensus 60 ~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~-----~~-l~~~~~~~~~~~~~ 133 (662)
T 3azo_A 60 EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP-----RP-LTPVSAVGGGLRWA 133 (662)
T ss_dssp EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCC-----EE-CSCCCCSTTCEEEE
T ss_pred cceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCC-----Ee-ccCCccCCCCcccc
Confidence 344556665555 56565 99998 776654 4555555554 2 221 11 112 445678
Q ss_pred eEEEccCCCeEEEEeec-------CCcceEEeecccc------ccccccccccCCCCCCceeecccccccceeEEEeecc
Q 013578 143 AVAFADNATSIVVATHN-------LSGCSLYMYGEEK------AISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGA 209 (440)
Q Consensus 143 ~v~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (440)
.++|+|||+.|++++.+ .....+++|+... .... .+. . .+ ....
T Consensus 134 ~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------~l~------~---~~-------~~~~ 190 (662)
T 3azo_A 134 DPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-------ELS------D---DA-------HRFV 190 (662)
T ss_dssp EEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-------ESS------C---SC-------SSEE
T ss_pred CcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-------EEE------e---cC-------CCcc
Confidence 99999999999998876 3335677776554 1100 000 0 00 0112
Q ss_pred cccccCCCCCeEEEEeeCC--------ceEEEEeCC-CC---ceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEE
Q 013578 210 SATYGTADGSTIIASCSEG--------TDISIWHGK-TG---KLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWE 277 (440)
Q Consensus 210 ~~~~~~~~~~~~l~s~~~d--------~~i~vwd~~-~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d 277 (440)
....++|||+ .|+.++.+ ..|++||+. ++ +.......+...+..+.|+|||+++++++.++...||.
T Consensus 191 ~~~~~SpDG~-~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~ 269 (662)
T 3azo_A 191 TGPRLSPDGR-QAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHR 269 (662)
T ss_dssp CCCEECTTSS-EEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEE
T ss_pred cCceECCCCC-EEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEE
Confidence 2344689999 55544433 479999998 56 44333444467788999999999888888888656665
Q ss_pred eEecCCCceeeeeeeeeeeccccc--------eEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 013578 278 IVYSKDGLVKAVTSVMQLKGHKSA--------VTWLCFAPNSEQIITASKDGTLRVWNIN 329 (440)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~h~~~--------v~~~~~~p~~~~l~s~~~dg~i~iwd~~ 329 (440)
++... +. .......+... +.+++|+|+++++++++. +.++||.+.
T Consensus 270 ~~~~~-~~-----~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 270 VDPAT-GA-----ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp ECTTT-CC-----EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred EECCC-Cc-----eeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 54211 11 11111122211 567899999999999998 999999543
No 179
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.66 E-value=1.5e-15 Score=147.70 Aligned_cols=200 Identities=12% Similarity=0.130 Sum_probs=138.1
Q ss_pred ccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCc---c--cEEEecCCCCeEEEEecC---------CCEEEEEe
Q 013578 213 YGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLK---N--NMAAISPNGRFLAAAAFT---------ADVKVWEI 278 (440)
Q Consensus 213 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~---v--~~~~~s~~~~~l~~~~~d---------g~i~i~d~ 278 (440)
.++++|+ +++++ |+.|++||+.+++....+..+... + ..++|||||++|+.++.+ +.+.+||+
T Consensus 23 ~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~ 99 (740)
T 4a5s_A 23 RWISDHE-YLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL 99 (740)
T ss_dssp EECSSSE-EEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred EECCCCc-EEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEEC
Confidence 4478886 77775 899999999999987777665432 2 337899999999999876 56779998
Q ss_pred EecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCe---
Q 013578 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGAT--- 355 (440)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 355 (440)
..++ ...+..|.+.+...+|||||+.||.+. |+.|++||+.++...+-....... .. ..++.
T Consensus 100 ~~~~---------~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~---~~--~~g~~~~v 164 (740)
T 4a5s_A 100 NKRQ---------LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKED---II--YNGITDWV 164 (740)
T ss_dssp TTTE---------ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTT---TE--EESBCCHH
T ss_pred CCCc---------EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCcc---ce--ecCccccc
Confidence 6553 334666778899999999999998885 689999999876432110000000 00 00000
Q ss_pred ------eeeeeEEeCCCCCEEEEec--CC-----------------------------------EEEEEEcCC---ccc-
Q 013578 356 ------LQYDRLSLSSDGKILAATH--GS-----------------------------------TLQWLSVET---GKV- 388 (440)
Q Consensus 356 ------~~v~~~~~s~~g~~l~~~~--~~-----------------------------------~i~i~d~~~---~~~- 388 (440)
.....+.|||||+.||... ++ .|++||+.+ ++.
T Consensus 165 ~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~ 244 (740)
T 4a5s_A 165 YEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNA 244 (740)
T ss_dssp HHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCC
T ss_pred ccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcc
Confidence 1123589999999998752 11 588899998 731
Q ss_pred -hhhhhc-----cccCCeEEEEecCCCCCCCCCcceEEEEeeC----CCeEEEEeCCCCC
Q 013578 389 -LDTAEK-----AHEGEITCMAWAPKTIPMGNQQVSVLATSSV----DKKVKLWLAPSLE 438 (440)
Q Consensus 389 -~~~~~~-----~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~----Dg~i~vw~~~~~~ 438 (440)
...+.. +|...+..++|+||+ ++++.... +..|++||+.+++
T Consensus 245 ~~~~l~~~~~~~~~~~~~~~~~wspdg--------~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 245 TSIQITAPASMLIGDHYLCDVTWATQE--------RISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp CEEEECCCHHHHTSCEEEEEEEEEETT--------EEEEEEEESSTTEEEEEEEEEETTT
T ss_pred eEEEecCCccCCCCCeEEEEEEEeCCC--------eEEEEEeCCCCCEEEEEEEECCCCc
Confidence 112211 377789999999998 65655432 4479999998876
No 180
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.65 E-value=1.2e-14 Score=130.78 Aligned_cols=241 Identities=8% Similarity=-0.031 Sum_probs=150.2
Q ss_pred CCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCC
Q 013578 140 PPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGS 219 (440)
Q Consensus 140 ~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (440)
.+..++|+|+|++++.+........+++++........-... . ........++|+|+
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~----------------~-------~~~~~~~~~spdg~ 93 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEG----------------K-------GDNTFGGFISTDER 93 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCS----------------S-------CBCTTTCEECTTSS
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecC----------------C-------CCccccceECCCCC
Confidence 378889999999998887664445677776544311000000 0 00011134589998
Q ss_pred eEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccE-------------------EEecCCCCeEEEE-----ecCCCEEE
Q 013578 220 TIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNM-------------------AAISPNGRFLAAA-----AFTADVKV 275 (440)
Q Consensus 220 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~-------------------~~~s~~~~~l~~~-----~~dg~i~i 275 (440)
.|+.++.++.|++||+.+++.......+...... +.++|+++.++.+ ..+..|++
T Consensus 94 -~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~ 172 (396)
T 3c5m_A 94 -AFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIK 172 (396)
T ss_dssp -EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEE
T ss_pred -EEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEE
Confidence 7777777778999999988765555433321111 2467777776654 34567888
Q ss_pred EEeEecCCCceeeeeeeeeeeccccceEEEEEcC-CCCEEEEEeCC------CcEEEEecCccccccCCCCccccccccc
Q 013578 276 WEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP-NSEQIITASKD------GTLRVWNINVRYHLDEDPKTLKVLPIPL 348 (440)
Q Consensus 276 ~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~ 348 (440)
||+..+. ...+..+...+..+.|+| ++..|+..+.+ ..|.+||+..+... . +
T Consensus 173 ~d~~~g~---------~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~--------~----l 231 (396)
T 3c5m_A 173 VDIETGE---------LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR--------K----I 231 (396)
T ss_dssp EETTTCC---------EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE--------E----S
T ss_pred EECCCCc---------EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee--------E----e
Confidence 8875433 222234667789999999 78877766543 35888887643211 0 0
Q ss_pred cCCCCCeeeeeeEEeCCCCCEEEEec-C-----CEEEEEEcCCccchhhhhccccCCeEEEEecC-CCCCCCCCcceEEE
Q 013578 349 LDSNGATLQYDRLSLSSDGKILAATH-G-----STLQWLSVETGKVLDTAEKAHEGEITCMAWAP-KTIPMGNQQVSVLA 421 (440)
Q Consensus 349 ~~~~~~~~~v~~~~~s~~g~~l~~~~-~-----~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~~~~~~~~~l~ 421 (440)
.. ......+..++|+|||++|+... + +.|++||+.+++..... ... ... +.|+| ++ ++|+
T Consensus 232 ~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~--~~~-~~~-~~~s~~dg--------~~l~ 298 (396)
T 3c5m_A 232 KE-HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM--VMP-PCS-HLMSNFDG--------SLMV 298 (396)
T ss_dssp SC-CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE--ECC-SEE-EEEECSSS--------SEEE
T ss_pred ec-cCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee--eCC-CCC-CCccCCCC--------ceEE
Confidence 01 11123467899999999776642 2 44999999988754322 111 233 89999 88 6777
Q ss_pred Eee----------------CCCeEEEEeCCCCC
Q 013578 422 TSS----------------VDKKVKLWLAPSLE 438 (440)
Q Consensus 422 t~~----------------~Dg~i~vw~~~~~~ 438 (440)
+++ .++.|++|++.+++
T Consensus 299 ~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 299 GDGCDAPVDVADADSYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp EEECCC----------CCCCCCEEEEEETTTTB
T ss_pred EecCCcceeeccccccccCCCCcEEEEecccCc
Confidence 654 34789999998764
No 181
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.65 E-value=1.5e-12 Score=112.09 Aligned_cols=286 Identities=8% Similarity=0.044 Sum_probs=177.9
Q ss_pred ccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEE
Q 013578 87 LKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLY 166 (440)
Q Consensus 87 l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~ 166 (440)
+..+...+.+++++++|+++++...++.|.+||.. +... ... .......+..+++.+++...++...+ ..+.
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~---~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~---~~i~ 81 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT---EYP-LPTPDAKVMCLTISSDGEVWFTENAA---NKIG 81 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE---EEE-CSSTTCCEEEEEECTTSCEEEEETTT---TEEE
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE---Eec-CCcccCceeeEEECCCCCEEEeCCCC---CeEE
Confidence 44566789999999999988877778899999987 3311 111 11234678899999998866654332 3455
Q ss_pred eeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeee-e
Q 013578 167 MYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGN-V 245 (440)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-~ 245 (440)
.++....... +.... .. ..+..+.+.++|. ++++...++.|.+||. +++.... .
T Consensus 82 ~~~~~g~~~~---------------~~~~~-~~-------~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~~~ 136 (299)
T 2z2n_A 82 RITKKGIIKE---------------YTLPN-PD-------SAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIREYEL 136 (299)
T ss_dssp EECTTSCEEE---------------EECSS-TT-------CCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEEC
T ss_pred EECCCCcEEE---------------EeCCC-cC-------CCceeeEECCCCC-EEEEecCCceEEEECC-CCCEEEecC
Confidence 5543311100 00000 00 0112233456776 6666666788999998 5554322 2
Q ss_pred eCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEE
Q 013578 246 DTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRV 325 (440)
Q Consensus 246 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~i 325 (440)
......+..++++++|+++++...++.|..||. .+. .. ...+..+...+.+++++++|.++++...++.|.+
T Consensus 137 ~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~---~~----~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 208 (299)
T 2z2n_A 137 PNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGD---IT----EFKIPTPASGPVGITKGNDDALWFVEIIGNKIGR 208 (299)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC---EE----EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred CCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCc---EE----EeeCCCCCCcceeEEECCCCCEEEEccCCceEEE
Confidence 223456788999999988777766788999986 322 11 1112334456889999999987777667889999
Q ss_pred EecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcCCccchhhhhccccCCeEEEE
Q 013578 326 WNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVETGKVLDTAEKAHEGEITCMA 404 (440)
Q Consensus 326 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 404 (440)
||. ++... .+.. ......+..++++++|+++++. .++.|..||. +++........+...+.+++
T Consensus 209 ~~~-~g~~~--------~~~~-----~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~ 273 (299)
T 2z2n_A 209 ITT-SGEIT--------EFKI-----PTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGIC 273 (299)
T ss_dssp ECT-TCCEE--------EEEC-----SSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEE
T ss_pred ECC-CCcEE--------EEEC-----CCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEE
Confidence 998 43211 0100 1122346789999999977776 4789999998 45432221123456799999
Q ss_pred ecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 405 WAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 405 ~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
+ +++ .++++.+ .+.+..++..+.+
T Consensus 274 ~-~~g--------~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 274 F-DGE--------TIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp E-CSS--------CEEEEET-TTEEEEEEEC---
T ss_pred e-cCC--------CEEEEec-CCcEEEEEcCccc
Confidence 9 886 5555544 5677777776543
No 182
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.64 E-value=7.5e-13 Score=122.95 Aligned_cols=307 Identities=12% Similarity=0.080 Sum_probs=178.7
Q ss_pred cceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEc----cCCCeEEEEeecCCcceEEe
Q 013578 92 DSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFA----DNATSIVVATHNLSGCSLYM 167 (440)
Q Consensus 92 ~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~----~~~~~l~~~~~~~~~~~~~~ 167 (440)
..+.++.|+|||+++++++.|+.|.+||+......... .. ..+.....++|+ |+|++++++.... ..+.+
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~--~i--~~G~~P~~ia~s~~~~pDGk~l~v~n~~~--~~v~V 270 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA--EI--KIGSEARSIETSKMEGWEDKYAIAGAYWP--PQYVI 270 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE--EE--ECCSEEEEEEECCSTTCTTTEEEEEEEET--TEEEE
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeE--EE--ecCCCCceeEEccccCCCCCEEEEEEccC--CeEEE
Confidence 35679999999999999999999999999622222111 11 223457899999 6999999988763 34445
Q ss_pred eccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee--eee
Q 013578 168 YGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL--GNV 245 (440)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~--~~~ 245 (440)
++............ .....+....+... ....+..++++..+++....+|.|.++|..+.+.+ ..+
T Consensus 271 iD~~t~~~~~~i~~------~~~~~~~~~~~p~~------rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i 338 (567)
T 1qks_A 271 MDGETLEPKKIQST------RGMTYDEQEYHPEP------RVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI 338 (567)
T ss_dssp EETTTCCEEEEEEC------CEECTTTCCEESCC------CEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE
T ss_pred EECCCCcEEEEEec------cccccccccccCCC------ceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee
Confidence 55433211100000 00000000000000 01123335666667777788899999998875432 223
Q ss_pred eCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeee--eeccccceEEEEEcCCCCEE-EEEe-CC
Q 013578 246 DTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQ--LKGHKSAVTWLCFAPNSEQI-ITAS-KD 320 (440)
Q Consensus 246 ~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l-~s~~-~d 320 (440)
.. ......+.|+|+|++|+++. .+++|.++|+.+++ ... .+.. -..|.+.-..+ ++|++..+ +++. .+
T Consensus 339 ~~-~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k---l~~--~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~ 411 (567)
T 1qks_A 339 SA-ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK---LVA--IEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGD 411 (567)
T ss_dssp EC-CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE---EEE--EEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSS
T ss_pred ec-cccccCceECCCCCEEEEEeCCCCeEEEEECCCCc---EEE--EEeccCcCCCCccceee-ECCCCCcEEEeCCCCC
Confidence 22 23456789999999988776 57889999986543 111 1111 12243322222 68875544 4443 46
Q ss_pred CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--------CCEEEEEEcCCc-----c
Q 013578 321 GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--------GSTLQWLSVETG-----K 387 (440)
Q Consensus 321 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--------~~~i~i~d~~~~-----~ 387 (440)
++|.++|..+...........+.+.. .... -..+..+|++++|.+.. .+.|.++|+.+. .
T Consensus 412 ~~Vsvid~~~~~~~~~~~kvv~~i~~----~g~g---~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~ 484 (567)
T 1qks_A 412 DSVALIGTDPEGHPDNAWKILDSFPA----LGGG---SLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSD 484 (567)
T ss_dssp SEEEEEECCTTTCTTTBTSEEEEEEC----SCSC---CCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSC
T ss_pred CeEEEecCCCCCCccccCEEEEEEec----CCCC---CEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccC
Confidence 89999999863211111111111111 1111 12477899999888754 359999999877 2
Q ss_pred ch-hhhh-------ccccCCeEEEEecCCCCCCCCCcceEEEEe-e----CCCeEEEEeCCCCC
Q 013578 388 VL-DTAE-------KAHEGEITCMAWAPKTIPMGNQQVSVLATS-S----VDKKVKLWLAPSLE 438 (440)
Q Consensus 388 ~~-~~~~-------~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~-~----~Dg~i~vw~~~~~~ 438 (440)
.. ..+. ......+..+.|+|+| +.+..+ . .++.|.|+|..+++
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G--------~~~~~s~~~~~~~~~~i~v~D~~t~~ 540 (567)
T 1qks_A 485 PEFKTLPIAEWAGITEGQPRVVQGEFNKDG--------TEVWFSVWNGKDQESALVVVDDKTLE 540 (567)
T ss_dssp CCEEEECHHHHHTCCSSCCEEEEEEECTTS--------SEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred CCcEEeccccccccCCCCcceEeeeECCCC--------CEEEEEeecCCCCCCcEEEEECCCce
Confidence 11 1111 0124578999999998 444443 2 37999999998865
No 183
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.63 E-value=1.7e-13 Score=115.96 Aligned_cols=218 Identities=12% Similarity=0.070 Sum_probs=144.8
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccc
Q 013578 102 DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQ 181 (440)
Q Consensus 102 dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (440)
.+++|++++.|+.|.+||.++++.. .....+....+.++.++|+|+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~----w~~~~~~~~~~~~~~~~pdG~------------------------------ 49 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIV----WEYPLEKGWECNSVAATKAGE------------------------------ 49 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEE----EEEECCTTCCCCEEEECTTSC------------------------------
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEE----EEeCCCccCCCcCeEECCCCC------------------------------
Confidence 4689999999999999998776532 222222113567777777665
Q ss_pred cCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCC-CCcccEEEecCC
Q 013578 182 QSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN-QLKNNMAAISPN 260 (440)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~s~~ 260 (440)
+++ +.++.|..||. +++.+..+..+ ...+.++.+.++
T Consensus 50 ---------------------------------------ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~d 87 (276)
T 3no2_A 50 ---------------------------------------ILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPD 87 (276)
T ss_dssp ---------------------------------------EEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTT
T ss_pred ---------------------------------------EEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCC
Confidence 333 23455888888 78888888764 246778899999
Q ss_pred CCeEEEEec-CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCC
Q 013578 261 GRFLAAAAF-TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPK 339 (440)
Q Consensus 261 ~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 339 (440)
|+++++.+. ++.|..+|. .++ .............+......+++.++|+++++...++.|..||.+ ++.+.+...
T Consensus 88 G~~lv~~~~~~~~v~~vd~-~Gk--~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~ 163 (276)
T 3no2_A 88 GNALVAWCGHPSTILEVNM-KGE--VLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL 163 (276)
T ss_dssp SCEEEEEESTTEEEEEECT-TSC--EEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC
T ss_pred CCEEEEecCCCCEEEEEeC-CCC--EEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEEC
Confidence 999999887 666665553 121 111111101111233345667889999999999999999999987 544322110
Q ss_pred ccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhcccc------CCeEEEEecCCCCCC
Q 013578 340 TLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHE------GEITCMAWAPKTIPM 412 (440)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~------~~v~~v~~~~~~~~~ 412 (440)
. .....+...++|.+++++. ++.|..+|..+|+.+.++. .+. ..+..+...+++
T Consensus 164 ------------~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~-~~~~~~~~l~~~~~~~~~~~G--- 224 (276)
T 3no2_A 164 ------------S---GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN-ANDIEGVQLFFVAQLFPLQNG--- 224 (276)
T ss_dssp ------------S---SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE-GGGSBSCCCSEEEEEEECTTS---
T ss_pred ------------C---CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec-CCCCCCccccccccceEcCCC---
Confidence 0 1233577789999888766 5689999999999987763 221 237788888887
Q ss_pred CCCcceEEEEe
Q 013578 413 GNQQVSVLATS 423 (440)
Q Consensus 413 ~~~~~~~l~t~ 423 (440)
.++++.
T Consensus 225 -----~i~v~~ 230 (276)
T 3no2_A 225 -----GLYICN 230 (276)
T ss_dssp -----CEEEEE
T ss_pred -----CEEEEe
Confidence 666665
No 184
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.62 E-value=7.6e-14 Score=135.70 Aligned_cols=260 Identities=13% Similarity=0.118 Sum_probs=154.2
Q ss_pred ccCcceeEEEEccCCCEEEEeeCC-----CcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578 89 GHGDSVTGLCFSSDGKCLATACAD-----GVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC 163 (440)
Q Consensus 89 ~H~~~V~~l~~s~dg~~l~t~s~d-----g~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~ 163 (440)
+|...+..++|||||++||.++.+ ..|++||+.+++...... ....+..++|+|| +.|+.+..+....
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~------~~~~~~~~~wspD-~~l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL------KWVKFSGLAWLGN-DALLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE------EEEESCCCEESTT-SEEEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC------CCceeccEEEECC-CEEEEEEecCccc
Confidence 344578899999999999987654 469999999876421111 1122467899999 9888876542100
Q ss_pred eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce--
Q 013578 164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL-- 241 (440)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-- 241 (440)
+. .+........|++|++.++..
T Consensus 233 ------------------------------------------------------~~-~~~~~~~~~~v~~~~lgt~~~~~ 257 (741)
T 1yr2_A 233 ------------------------------------------------------GQ-AFQALNYNQTVWLHRLGTPQSAD 257 (741)
T ss_dssp -------------------------------------------------------------CCCCCEEEEEETTSCGGGC
T ss_pred ------------------------------------------------------cc-ccccCCCCCEEEEEECCCCchhC
Confidence 00 011112244588888877652
Q ss_pred eeeee--CCCCcccEEEecCCCCeEEEEecCC-----CEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEE
Q 013578 242 LGNVD--TNQLKNNMAAISPNGRFLAAAAFTA-----DVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQI 314 (440)
Q Consensus 242 ~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l 314 (440)
...+. .+...+..+.|+|||++|+..+.++ .|++||+..+.. . ....+..+...+.... +|+|+.|
T Consensus 258 ~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~----~--~~~~l~~~~~~~~~~~-~~dg~~l 330 (741)
T 1yr2_A 258 QPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI----G--PVTALIPDLKAQWDFV-DGVGDQL 330 (741)
T ss_dssp EEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE----C--CCEEEECSSSSCEEEE-EEETTEE
T ss_pred EEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC----c--ccEEecCCCCceEEEE-eccCCEE
Confidence 12222 2222467889999999998887654 789999865410 0 0233444555555553 4889888
Q ss_pred EEEeCC----CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEEcC-Cccc
Q 013578 315 ITASKD----GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLSVE-TGKV 388 (440)
Q Consensus 315 ~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d~~-~~~~ 388 (440)
+..+.+ +.|.+||+.+.. ..... +.. .+...+..++++ ++.++++. .++..++|... +++.
T Consensus 331 ~~~s~~~~~~~~l~~~d~~~~~------~~~~~----l~~--~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~ 397 (741)
T 1yr2_A 331 WFVSGDGAPLKKIVRVDLSGST------PRFDT----VVP--ESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKP 397 (741)
T ss_dssp EEEECTTCTTCEEEEEECSSSS------CEEEE----EEC--CCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCE
T ss_pred EEEECCCCCCCEEEEEeCCCCc------cccEE----Eec--CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCc
Confidence 877753 459999987531 00000 011 112235567776 45555554 47766655443 4555
Q ss_pred hhhhhccccCCeEEEEecCCCCCCCCCcceEEE-Eee---CCCeEEEEeCCCCC
Q 013578 389 LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLA-TSS---VDKKVKLWLAPSLE 438 (440)
Q Consensus 389 ~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~-t~~---~Dg~i~vw~~~~~~ 438 (440)
...+...+.+.|..+.++|++ ..|+ +.+ ..++|++||+.+++
T Consensus 398 ~~~l~~~~~~~v~~~~~s~d~--------~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 398 AGAVSLPGIGSASGLSGRPGD--------RHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEECBCSSSCEEEEEECCBTC--------SCEEEEEEETTEEEEEEEEETTTTE
T ss_pred eeeccCCCCeEEEEeecCCCC--------CEEEEEEcCCCCCCEEEEEECCCCc
Confidence 554532346778999999986 4343 333 35889999998764
No 185
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.61 E-value=3.9e-14 Score=124.21 Aligned_cols=185 Identities=11% Similarity=0.067 Sum_probs=120.8
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecC----CCEEEEEeEecCCCceeeeeeeeeee
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFT----ADVKVWEIVYSKDGLVKAVTSVMQLK 296 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~ 296 (440)
+++++..++.|.+||..+++.......+...+.+++++++|+++++...+ +.|.+||...... . ......
T Consensus 58 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~---~---~~~~~~ 131 (333)
T 2dg1_A 58 LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL---Q---DIIEDL 131 (333)
T ss_dssp EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC---E---EEECSS
T ss_pred EEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEE---E---EEEccC
Confidence 55566677889999998887655443455678999999999988777666 6798998654331 0 011111
Q ss_pred ccccceEEEEEcCCCCEEEEEeC------CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEE
Q 013578 297 GHKSAVTWLCFAPNSEQIITASK------DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKIL 370 (440)
Q Consensus 297 ~h~~~v~~~~~~p~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 370 (440)
.+...+.+++++|+|+++++... .+.|..||..++.. ..+. ........++|+|+|++|
T Consensus 132 ~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~-------~~~~~~~~i~~~~dg~~l 196 (333)
T 2dg1_A 132 STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV--------TPII-------QNISVANGIALSTDEKVL 196 (333)
T ss_dssp SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE--------EEEE-------EEESSEEEEEECTTSSEE
T ss_pred ccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEE--------EEee-------cCCCcccceEECCCCCEE
Confidence 23457899999999987776653 24455555443211 0000 011125679999999866
Q ss_pred EEe-c-CCEEEEEEcCC-ccchhhh----h---ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 371 AAT-H-GSTLQWLSVET-GKVLDTA----E---KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 371 ~~~-~-~~~i~i~d~~~-~~~~~~~----~---~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
..+ . ++.|++|+..+ +..+..+ . .++ ..+..+++++++ +++++...++.|.+|+..
T Consensus 197 ~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G--------~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 197 WVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDD--------NLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTC--------CEEEEEETTTEEEEECTT
T ss_pred EEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCC--------CEEEEEcCCCEEEEECCC
Confidence 543 3 68999999864 3332211 0 112 467889999998 777777778999999974
No 186
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.61 E-value=7.9e-13 Score=114.81 Aligned_cols=252 Identities=13% Similarity=0.114 Sum_probs=154.0
Q ss_pred cccccCcceeEEEEccCCCEEEE-------eeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEee
Q 013578 86 TLKGHGDSVTGLCFSSDGKCLAT-------ACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATH 158 (440)
Q Consensus 86 ~l~~H~~~V~~l~~s~dg~~l~t-------~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~ 158 (440)
.+...-....+++|+++|+++++ +..++.|.+|+..++....... .....+...+..+++++++
T Consensus 12 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~i~~~~~~-------- 82 (314)
T 1pjx_A 12 KVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-PEVNGYGGIPAGCQCDRDA-------- 82 (314)
T ss_dssp EEECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-CEETTEECCEEEEEECSSS--------
T ss_pred hhhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-cccCCCCCCCceEEEecCC--------
Confidence 34444556789999999988888 6778999999977654211000 0000111334444444441
Q ss_pred cCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC
Q 013578 159 NLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT 238 (440)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 238 (440)
++ ++++.. ...|.+||..
T Consensus 83 -----------------------------------------------------------g~-l~v~~~-~~~l~~~d~~- 100 (314)
T 1pjx_A 83 -----------------------------------------------------------NQ-LFVADM-RLGLLVVQTD- 100 (314)
T ss_dssp -----------------------------------------------------------SE-EEEEET-TTEEEEEETT-
T ss_pred -----------------------------------------------------------Cc-EEEEEC-CCCEEEEeCC-
Confidence 22 333332 3358888877
Q ss_pred Cceeee-eeC----CCCcccEEEecCCCCeEEEEecC---------------CCEEEEEeEecCCCceeeeeeeeeeecc
Q 013578 239 GKLLGN-VDT----NQLKNNMAAISPNGRFLAAAAFT---------------ADVKVWEIVYSKDGLVKAVTSVMQLKGH 298 (440)
Q Consensus 239 ~~~~~~-~~~----~~~~v~~~~~s~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~~~~~~~~~~~h 298 (440)
++.... ... ....+..++++++|+++++...+ +.|..||.. + . ...+..+
T Consensus 101 g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g---~------~~~~~~~ 170 (314)
T 1pjx_A 101 GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G---Q------MIQVDTA 170 (314)
T ss_dssp SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S---C------EEEEEEE
T ss_pred CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C---C------EEEeccC
Confidence 654332 211 12347889999999887776554 345545432 1 1 1112223
Q ss_pred ccceEEEEEc----CCCCEEEEE-eCCCcEEEEecCc-cccccCCCCccccccccccCCCCCe-eeeeeEEeCCCCCEEE
Q 013578 299 KSAVTWLCFA----PNSEQIITA-SKDGTLRVWNINV-RYHLDEDPKTLKVLPIPLLDSNGAT-LQYDRLSLSSDGKILA 371 (440)
Q Consensus 299 ~~~v~~~~~~----p~~~~l~s~-~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~ 371 (440)
......++|+ |+++.|+.+ ..++.|.+||++. +... .... ......+. .....++++++|++++
T Consensus 171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~-----~~~~----~~~~~~~~~~~p~~i~~d~~G~l~v 241 (314)
T 1pjx_A 171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIE-----NKKV----WGHIPGTHEGGADGMDFDEDNNLLV 241 (314)
T ss_dssp ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEE-----EEEE----EEECCCCSSCEEEEEEEBTTCCEEE
T ss_pred CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccc-----cceE----EEECCCCCCCCCCceEECCCCCEEE
Confidence 3456889999 999765544 5678999999762 2110 0000 00111111 3356799999999877
Q ss_pred Ee-cCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcce-EEEEeeCCCeEEEEeCCC
Q 013578 372 AT-HGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVS-VLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 372 ~~-~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~-~l~t~~~Dg~i~vw~~~~ 436 (440)
+. .++.|.+||..+++.+..+ ..+...+.+++|++++ + ++++...++.|..|++..
T Consensus 242 ~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~i~~~~dg--------~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 242 ANWGSSHIEVFGPDGGQPKMRI-RCPFEKPSNLHFKPQT--------KTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEETTTEEEEECTTCBSCSEEE-ECSSSCEEEEEECTTS--------SEEEEEETTTTEEEEEECSS
T ss_pred EEcCCCEEEEEcCCCCcEeEEE-eCCCCCceeEEECCCC--------CEEEEEeCCCCeEEEEeCCC
Confidence 75 4789999999888876665 3566789999999997 6 555656678999999864
No 187
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.60 E-value=4.3e-13 Score=116.94 Aligned_cols=238 Identities=12% Similarity=0.044 Sum_probs=156.2
Q ss_pred cceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccc
Q 013578 92 DSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEE 171 (440)
Q Consensus 92 ~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~ 171 (440)
.....+.+. +++++++...++.|.+||..+++.. ... .....+..++++++++
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~-----~~i-~~~~~p~~i~~~~~g~-------------------- 96 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEV-----GRI-TGFTSPRYIHFLSDEK-------------------- 96 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEE-----EEE-ECCSSEEEEEEEETTE--------------------
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEE-----EEc-CCCCCCcEEEEeCCCe--------------------
Confidence 446778874 4556666667899999999876531 111 1224456666655441
Q ss_pred cccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCC--
Q 013578 172 KAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQ-- 249 (440)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-- 249 (440)
++++...++.|.+||..+++....+....
T Consensus 97 -------------------------------------------------lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~ 127 (328)
T 3dsm_A 97 -------------------------------------------------AYVTQIWDYRIFIINPKTYEITGYIECPDMD 127 (328)
T ss_dssp -------------------------------------------------EEEEEBSCSEEEEEETTTTEEEEEEECTTCC
T ss_pred -------------------------------------------------EEEEECCCCeEEEEECCCCeEEEEEEcCCcc
Confidence 33444467889999999998877776543
Q ss_pred ---CcccEEEecCCCCeEEEEe--cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCC----
Q 013578 250 ---LKNNMAAISPNGRFLAAAA--FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKD---- 320 (440)
Q Consensus 250 ---~~v~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d---- 320 (440)
.....+++ ++..|+++. .++.|.++|+.+.+ ....+.. ......++++|+|++++++..+
T Consensus 128 ~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~--------~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~ 196 (328)
T 3dsm_A 128 MESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDK--------VVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGS 196 (328)
T ss_dssp TTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTE--------EEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTC
T ss_pred ccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCe--------EEEEEEc-CCCccceEEcCCCCEEEEECCCccCC
Confidence 13456777 455555555 48899999986543 2333332 2345688999999977776654
Q ss_pred ------CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhh-hh
Q 013578 321 ------GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDT-AE 393 (440)
Q Consensus 321 ------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~-~~ 393 (440)
+.|.++|..+.+... .+..+ .+ .....++++|+++.|.++.. .|.+||..+++.... +.
T Consensus 197 ~~~~~~~~v~~id~~t~~v~~-------~~~~~----~g--~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~ 262 (328)
T 3dsm_A 197 PYGYEAPSLYRIDAETFTVEK-------QFKFK----LG--DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFL 262 (328)
T ss_dssp SSCBCCCEEEEEETTTTEEEE-------EEECC----TT--CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSB
T ss_pred ccccCCceEEEEECCCCeEEE-------EEecC----CC--CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeee
Confidence 789999998654321 11110 01 13567999999998887765 899999999886432 11
Q ss_pred ccccCCeEEEEecCCCCCCCCCcceEEEEe----eCCCeEEEEeCCCCC
Q 013578 394 KAHEGEITCMAWAPKTIPMGNQQVSVLATS----SVDKKVKLWLAPSLE 438 (440)
Q Consensus 394 ~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~----~~Dg~i~vw~~~~~~ 438 (440)
..+......++++|++. .++++. ..++.|.+|+.. ++
T Consensus 263 ~~~~~~p~gi~vdp~~g-------~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 263 EFRDTKYYGLTVNPNNG-------EVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp CCCSSCEEEEEECTTTC-------CEEEEECTTSSSEEEEEEECTT-CC
T ss_pred cCCCCceEEEEEcCCCC-------eEEEEcccccccCCEEEEECCC-CC
Confidence 12246789999999430 566666 678999999987 54
No 188
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.59 E-value=6.2e-14 Score=135.38 Aligned_cols=182 Identities=7% Similarity=-0.006 Sum_probs=117.1
Q ss_pred eeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCC-------------EEEEEeEecCCCceeeeee
Q 013578 225 CSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTAD-------------VKVWEIVYSKDGLVKAVTS 291 (440)
Q Consensus 225 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-------------i~i~d~~~~~~~~~~~~~~ 291 (440)
|+.+..|++||+.+++.+..-.........++|+|||+.|+.++.|.. |++|++..+.. ....
T Consensus 143 G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~----~~~l 218 (695)
T 2bkl_A 143 AADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS----KDTV 218 (695)
T ss_dssp TCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG----GCEE
T ss_pred CCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCch----hceE
Confidence 445678999999998865111111122267899999999999988776 99999865431 1113
Q ss_pred eeeeeccccceEEEEEcCCCCEEEEEeCCC----cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC
Q 013578 292 VMQLKGHKSAVTWLCFAPNSEQIITASKDG----TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG 367 (440)
Q Consensus 292 ~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 367 (440)
+.....|...+.++.|+|||++|+..+.++ .|++|+..++. ...+. ... ..+....+ ++|
T Consensus 219 v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~--------~~~l~----~~~---~~~~~~~~-~~g 282 (695)
T 2bkl_A 219 VHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD--------FRLLV----KGV---GAKYEVHA-WKD 282 (695)
T ss_dssp EECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS--------CEEEE----ECS---SCCEEEEE-ETT
T ss_pred EEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc--------eEEee----cCC---CceEEEEe-cCC
Confidence 444445667889999999999998877665 56666543221 11110 001 11223445 566
Q ss_pred CEEEEec----CCEEEEEEcCCccc--hhhhhccc-cCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 368 KILAATH----GSTLQWLSVETGKV--LDTAEKAH-EGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 368 ~~l~~~~----~~~i~i~d~~~~~~--~~~~~~~h-~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
.+++.+. ++.|.+||+.+++. ...+...+ ...+..++|+ ++ .++++...|+..+||.++
T Consensus 283 ~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~--------~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 283 RFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG--------HLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT--------EEEEEEEETTEEEEEEEE
T ss_pred cEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC--------EEEEEEEECCEEEEEEEe
Confidence 6444443 47999999988763 23332223 4468889998 44 789999999999888664
No 189
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.59 E-value=7e-13 Score=113.49 Aligned_cols=203 Identities=13% Similarity=0.118 Sum_probs=133.0
Q ss_pred ccCcceeEEEE-ccCCCEEEEeeC-CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEE
Q 013578 89 GHGDSVTGLCF-SSDGKCLATACA-DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLY 166 (440)
Q Consensus 89 ~H~~~V~~l~~-s~dg~~l~t~s~-dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~ 166 (440)
+|...+.++++ .++++++++... ++.|++|+.. +.. .......+...+..++++++++
T Consensus 74 ~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~-g~~----~~~~~~~~~~~~~~i~~~~~g~--------------- 133 (286)
T 1q7f_A 74 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQF----VRKFGATILQHPRGVTVDNKGR--------------- 133 (286)
T ss_dssp TCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-SCE----EEEECTTTCSCEEEEEECTTSC---------------
T ss_pred ccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC-CcE----EEEecCccCCCceEEEEeCCCC---------------
Confidence 45567899999 577877777643 8899999943 221 1111122223455666665543
Q ss_pred eeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeee
Q 013578 167 MYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD 246 (440)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 246 (440)
++++...++.|.+||.. ++.+..+.
T Consensus 134 ------------------------------------------------------l~v~~~~~~~i~~~~~~-g~~~~~~~ 158 (286)
T 1q7f_A 134 ------------------------------------------------------IIVVECKVMRVIIFDQN-GNVLHKFG 158 (286)
T ss_dssp ------------------------------------------------------EEEEETTTTEEEEECTT-SCEEEEEE
T ss_pred ------------------------------------------------------EEEEECCCCEEEEEcCC-CCEEEEeC
Confidence 44555556778888854 55555553
Q ss_pred --CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee--ccccceEEEEEcCCCCEEEEEeCCC-
Q 013578 247 --TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK--GHKSAVTWLCFAPNSEQIITASKDG- 321 (440)
Q Consensus 247 --~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~l~s~~~dg- 321 (440)
.+...+..++++++|+++++...++.|++||... . .+..+. ++...+.+++++|+|+++++...++
T Consensus 159 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~--------~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~ 229 (286)
T 1q7f_A 159 CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-Q--------YLRQIGGEGITNYPIGVGINSNGEILIADNHNNF 229 (286)
T ss_dssp CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-C--------EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSC
T ss_pred CCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-C--------EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCE
Confidence 2334578899999999887777889999999632 1 233332 2335789999999999888887776
Q ss_pred cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccc
Q 013578 322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKV 388 (440)
Q Consensus 322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~ 388 (440)
.|.+||.... .+ ..+.. ......+..++++|+|+++++..++.|++|+.....+
T Consensus 230 ~i~~~~~~g~-~~-------~~~~~-----~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 230 NLTIFTQDGQ-LI-------SALES-----KVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQLAP 283 (286)
T ss_dssp EEEEECTTSC-EE-------EEEEE-----SSCCSCEEEEEEETTTEEEEEETTTEEEEEECSCCCC
T ss_pred EEEEECCCCC-EE-------EEEcc-----cCCCCcceeEEECCCCcEEEECCCCeEEEEEcccccc
Confidence 9999996532 11 11110 1111235679999999988887789999999865443
No 190
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.57 E-value=1.9e-12 Score=120.20 Aligned_cols=277 Identities=12% Similarity=0.040 Sum_probs=173.9
Q ss_pred cCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccc--ccccccc
Q 013578 101 SDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEE--KAISTNE 178 (440)
Q Consensus 101 ~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~ 178 (440)
+.+.++++...+++|.++|..+++.. .. ...+..+..+.|+||++++++++.+ ..+.+++.. ...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~-----~~-i~~g~~p~~v~~SpDGr~lyv~~~d---g~V~viD~~~~t~~---- 231 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIK-----TV-LDTGYAVHISRLSASGRYLFVIGRD---GKVNMIDLWMKEPT---- 231 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEE-----EE-EECSSCEEEEEECTTSCEEEEEETT---SEEEEEETTSSSCC----
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEE-----EE-EeCCCCccceEECCCCCEEEEEcCC---CeEEEEECCCCCCc----
Confidence 45567778888999999999876421 11 1233456799999999999988754 356666542 110
Q ss_pred ccccCCCCCCceeecccccccceeEEEeecccccccC----CCCCeEEEEeeCCceEEEEeCCCCceeeeeeCC------
Q 013578 179 GKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGT----ADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN------ 248 (440)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~------ 248 (440)
....+.....+..+.++ |||+..+++...++.|.++|..+.+.+..+...
T Consensus 232 --------------------~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~ 291 (567)
T 1qks_A 232 --------------------TVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDE 291 (567)
T ss_dssp --------------------EEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTT
T ss_pred --------------------EeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccc
Confidence 00111111223344557 699977777778899999999999988877532
Q ss_pred -----CCcccEEEecCCCCeEEEE-ecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe-CCC
Q 013578 249 -----QLKNNMAAISPNGRFLAAA-AFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS-KDG 321 (440)
Q Consensus 249 -----~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~-~dg 321 (440)
...+..+..++++..+++. ..+|+|.++|..... .. .+..+ ........+.|+|++++|++++ .++
T Consensus 292 ~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~-----~~-~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn 364 (567)
T 1qks_A 292 QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN-----NL-KTTEI-SAERFLHDGGLDGSHRYFITAANARN 364 (567)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS-----EE-EEEEE-ECCSSEEEEEECTTSCEEEEEEGGGT
T ss_pred ccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc-----cc-eeeee-eccccccCceECCCCCEEEEEeCCCC
Confidence 1245677888876655444 456889888864332 00 11222 1234567889999999887665 578
Q ss_pred cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEE-eCCC-CCEEEEec--CCEEEEEEcCC-------ccchh
Q 013578 322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS-LSSD-GKILAATH--GSTLQWLSVET-------GKVLD 390 (440)
Q Consensus 322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~-g~~l~~~~--~~~i~i~d~~~-------~~~~~ 390 (440)
.|.++|+.+++.... +. ......|.. .... ++|+ +.+.+++. ++.|.++|..+ .+.+.
T Consensus 365 ~V~ViD~~t~kl~~~-------i~--vgg~~Phpg--~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~ 433 (567)
T 1qks_A 365 KLVVIDTKEGKLVAI-------ED--TGGQTPHPG--RGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILD 433 (567)
T ss_dssp EEEEEETTTTEEEEE-------EE--CSSSSBCCT--TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE
T ss_pred eEEEEECCCCcEEEE-------Ee--ccCcCCCCc--cceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEE
Confidence 999999997654321 11 100001110 1122 5787 55555553 58999999988 45555
Q ss_pred hhhccccCCeEEEEecCCCCCCCCCcceEEEEeeC-------CCeEEEEeCCCC
Q 013578 391 TAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSV-------DKKVKLWLAPSL 437 (440)
Q Consensus 391 ~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~-------Dg~i~vw~~~~~ 437 (440)
.+. .....-..+..+|++ ++|..... ..+|.|+|+.+.
T Consensus 434 ~i~-~~g~g~~~i~~~p~~--------~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 434 SFP-ALGGGSLFIKTHPNS--------QYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEE-CSCSCCCCEECCTTC--------SEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred EEe-cCCCCCEEEEeCCCC--------CeEEEecCCCCCcccCceEEEEECCcc
Confidence 553 333333457789998 66666542 358999998865
No 191
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.56 E-value=8.1e-13 Score=127.98 Aligned_cols=182 Identities=9% Similarity=0.028 Sum_probs=119.1
Q ss_pred ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCC----------------EEEEEeEecCCCceeeeeee
Q 013578 229 TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTAD----------------VKVWEIVYSKDGLVKAVTSV 292 (440)
Q Consensus 229 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~----------------i~i~d~~~~~~~~~~~~~~~ 292 (440)
..|++||+.+++.+..... ...+..++|+|||+.|+.++.++. |++|++..+.. ....+
T Consensus 151 ~~i~v~d~~tg~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~----~~~~v 225 (710)
T 2xdw_A 151 VTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS----EDILC 225 (710)
T ss_dssp EEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG----GCEEE
T ss_pred EEEEEEECCCCCCCccccc-CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcc----cceEE
Confidence 3799999999887653322 223678999999999999988766 89999854431 10122
Q ss_pred eeeeccccceEEEEEcCCCCEEEEEeC-----CCcEEEEecCc------cccccCCCCccccccccccCCCCCeeeeeeE
Q 013578 293 MQLKGHKSAVTWLCFAPNSEQIITASK-----DGTLRVWNINV------RYHLDEDPKTLKVLPIPLLDSNGATLQYDRL 361 (440)
Q Consensus 293 ~~~~~h~~~v~~~~~~p~~~~l~s~~~-----dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 361 (440)
.....|...+.++.|+|||++|+..+. +..|++||+.+ +.. ....+ .... ..+. .
T Consensus 226 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~------~~~~l----~~~~---~~~~-~ 291 (710)
T 2xdw_A 226 AEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL------KWVKL----IDNF---EGEY-D 291 (710)
T ss_dssp ECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC------CCEEE----ECSS---SSCE-E
T ss_pred eccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc------ceEEe----eCCC---CcEE-E
Confidence 233335566889999999999887764 56899999875 210 01111 1111 1111 2
Q ss_pred EeCCCCCEEEEec-----CCEEEEEEcCCccc--hhhhhccccC--CeEEEEecCCCCCCCCCcceEEEEeeCCCe--EE
Q 013578 362 SLSSDGKILAATH-----GSTLQWLSVETGKV--LDTAEKAHEG--EITCMAWAPKTIPMGNQQVSVLATSSVDKK--VK 430 (440)
Q Consensus 362 ~~s~~g~~l~~~~-----~~~i~i~d~~~~~~--~~~~~~~h~~--~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~--i~ 430 (440)
.|+++|..|+..+ ...|.+||+.+++. ...+. .|.. .+..++|++++ .++++...|+. |.
T Consensus 292 ~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~--------~lv~~~~~~g~~~l~ 362 (710)
T 2xdw_A 292 YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV-PEHEKDVLEWVACVRSN--------FLVLCYLHDVKNTLQ 362 (710)
T ss_dssp EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE-CCCSSCEEEEEEEETTT--------EEEEEEEETTEEEEE
T ss_pred EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc-CCCCCCeEEEEEEEcCC--------EEEEEEEECCEEEEE
Confidence 5888988776532 24799999988752 23332 3443 68889999776 78889988985 55
Q ss_pred EEeCCCCC
Q 013578 431 LWLAPSLE 438 (440)
Q Consensus 431 vw~~~~~~ 438 (440)
+|++.+++
T Consensus 363 ~~~~~~g~ 370 (710)
T 2xdw_A 363 LHDLATGA 370 (710)
T ss_dssp EEETTTCC
T ss_pred EEECCCCC
Confidence 56664543
No 192
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.55 E-value=7.1e-13 Score=112.11 Aligned_cols=187 Identities=12% Similarity=0.149 Sum_probs=139.2
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCC-CcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc-
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQ-LKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH- 298 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h- 298 (440)
++++++.++.|.+||.++++.+.++..+. ..+.++.++|+|++|+ +.++.|+.||. .++ .+..+..+
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~--------~~W~~~~~~ 75 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGR--------ELWNIAAPA 75 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSC--------EEEEEECCT
T ss_pred EEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCC--------EEEEEcCCC
Confidence 89999999999999999999999988765 4688999999999888 44677988887 443 44455543
Q ss_pred ccceEEEEEcCCCCEEEEEeC-CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CC
Q 013578 299 KSAVTWLCFAPNSEQIITASK-DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GS 376 (440)
Q Consensus 299 ~~~v~~~~~~p~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~ 376 (440)
...+.++.+.|+|+++++.+. ++.|..+|.. ++.+.+ +.... ....+......+++.++|.++++.. ++
T Consensus 76 ~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~-------~~~~~-~~~~~~~~~~~v~~~~~G~~lv~~~~~~ 146 (276)
T 3no2_A 76 GCEMQTARILPDGNALVAWCGHPSTILEVNMK-GEVLSK-------TEFET-GIERPHAQFRQINKNKKGNYLVPLFATS 146 (276)
T ss_dssp TCEEEEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEE-------EEECC-SCSSGGGSCSCCEECTTSCEEEEETTTT
T ss_pred CccccccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEE-------EeccC-CCCcccccccCceECCCCCEEEEecCCC
Confidence 346889999999999999887 7777777753 322211 11000 0011112244577899999998875 79
Q ss_pred EEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 377 TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 377 ~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
.|..||.+ |+.+..+. ....+.++...+++ .++++++.+++|..+|..+++
T Consensus 147 ~v~~~d~~-G~~~w~~~--~~~~~~~~~~~~~g--------~~~v~~~~~~~v~~~d~~tG~ 197 (276)
T 3no2_A 147 EVREIAPN-GQLLNSVK--LSGTPFSSAFLDNG--------DCLVACGDAHCFVQLNLESNR 197 (276)
T ss_dssp EEEEECTT-SCEEEEEE--CSSCCCEEEECTTS--------CEEEECBTTSEEEEECTTTCC
T ss_pred EEEEECCC-CCEEEEEE--CCCCccceeEcCCC--------CEEEEeCCCCeEEEEeCcCCc
Confidence 99999998 99888874 23456778888887 789988888899999988765
No 193
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.54 E-value=2.8e-11 Score=106.94 Aligned_cols=293 Identities=10% Similarity=-0.005 Sum_probs=167.6
Q ss_pred EccCCCEEEEeeC--CC---cEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeec-------CCcceEE
Q 013578 99 FSSDGKCLATACA--DG---VIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHN-------LSGCSLY 166 (440)
Q Consensus 99 ~s~dg~~l~t~s~--dg---~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~-------~~~~~~~ 166 (440)
..|++++++.... .+ +|.++|..+++. ... .+.+... .++++||+++++++... .....+.
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~-----~~~-i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~ 100 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSI-----LGH-VNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVE 100 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeE-----EEE-ecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEE
Confidence 3467766666543 22 789999887642 221 2222334 99999999999988631 0123455
Q ss_pred eeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeC-CceEEEEeCCCCceeee-
Q 013578 167 MYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSE-GTDISIWHGKTGKLLGN- 244 (440)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~- 244 (440)
+++............. . ..+ ......+....++|||+.++++... ++.|.++| .+++.+..
T Consensus 101 viD~~t~~~~~~i~~~----~-----------~~~-~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~ 163 (373)
T 2mad_H 101 VFDPVTFLPIADIELP----D-----------APR-FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQL 163 (373)
T ss_pred EEECCCCcEEEEEECC----C-----------ccc-cccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEE
Confidence 5554332111000000 0 000 0000123345568999955544433 57899999 99988877
Q ss_pred eeCCCCcccEEEecCCC-CeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccce-EEEEEcCCCCEEEEEeCCCc
Q 013578 245 VDTNQLKNNMAAISPNG-RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAV-TWLCFAPNSEQIITASKDGT 322 (440)
Q Consensus 245 ~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v-~~~~~~p~~~~l~s~~~dg~ 322 (440)
+.... ++.+.|++ +.+++.+.||++.++|. .++... .......+ ....++ ....+.+++..++..+.++.
T Consensus 164 i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~--~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~ 235 (373)
T 2mad_H 164 LSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG--AGLVGAML-TAAQNLLTQPAQANKSGRIVWPVYSGK 235 (373)
T ss_pred cCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE--EEeccccc-cCCcceeecceeEecCCEEEEEcCCce
Confidence 65432 34455554 45566778999999998 543100 00000001 112222 23456666655544456789
Q ss_pred EEEEecCccccccCCCCccccccccc---cCCCCCeeeeeeEEeCCCCCEEEEec-----------CCEEEEEEcCCccc
Q 013578 323 LRVWNINVRYHLDEDPKTLKVLPIPL---LDSNGATLQYDRLSLSSDGKILAATH-----------GSTLQWLSVETGKV 388 (440)
Q Consensus 323 i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~s~~g~~l~~~~-----------~~~i~i~d~~~~~~ 388 (440)
+.+.|+...... ....+.... ............++++|+++.+.+.. ++.|.++|..+++.
T Consensus 236 v~vid~~~~~~~-----v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v 310 (373)
T 2mad_H 236 ILQADISAAGAT-----NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT 310 (373)
T ss_pred EEEEeccCCcce-----EeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEE
Confidence 999998643211 000010000 00000111133478999988766642 25899999999999
Q ss_pred hhhhhccccCCeEEEEecCCCCCCCCCcce-EEEEee-CCCeEEEEeCCCCC
Q 013578 389 LDTAEKAHEGEITCMAWAPKTIPMGNQQVS-VLATSS-VDKKVKLWLAPSLE 438 (440)
Q Consensus 389 ~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~-~l~t~~-~Dg~i~vw~~~~~~ 438 (440)
+..+. -.....+++|+||+ + +++++. .++.|.+||+.+++
T Consensus 311 v~~i~--~g~~p~~i~~s~Dg--------~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 311 SSQIS--LGHDVDAISVAQDG--------GPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred EEEEE--CCCCcCeEEECCCC--------CeEEEEEcCCCCeEEEEECCCCC
Confidence 88885 33468999999998 6 677776 58999999998876
No 194
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.52 E-value=7.7e-13 Score=115.54 Aligned_cols=207 Identities=14% Similarity=0.090 Sum_probs=130.5
Q ss_pred ccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEec------CCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 89 GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRIN------LPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 89 ~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~------~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
++-.....++++|+|+++++...++.|++|+.+..... ...+... ..+-..+..++++|+
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~-~~~~~~~~~~g~~~~~~~~P~~ia~~~~------------- 153 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGP-LLILGRSMQPGSDQNHFCQPTDVAVEPS------------- 153 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCC-SEEESBTTBCCCSTTCCSSEEEEEECTT-------------
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEE-EEEecccCCCCCCccccCCCcEEEEeCC-------------
Confidence 45567899999999999999888999999997643211 1111000 111123445555541
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEee-CCceEEEEeCCCCce
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCS-EGTDISIWHGKTGKL 241 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~ 241 (440)
++. ++++.+ .++.|++|+ .+++.
T Consensus 154 ------------------------------------------------------~g~-lyv~d~~~~~~I~~~~-~~g~~ 177 (329)
T 3fvz_A 154 ------------------------------------------------------TGA-VFVSDGYCNSRIVQFS-PSGKF 177 (329)
T ss_dssp ------------------------------------------------------TCC-EEEEECSSCCEEEEEC-TTSCE
T ss_pred ------------------------------------------------------CCe-EEEEeCCCCCeEEEEc-CCCCE
Confidence 222 455554 467788888 45666
Q ss_pred eeeeeCC----------CCcccEEEecCC-CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee--eccccceEEEEEc
Q 013578 242 LGNVDTN----------QLKNNMAAISPN-GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL--KGHKSAVTWLCFA 308 (440)
Q Consensus 242 ~~~~~~~----------~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~ 308 (440)
+..+... ......++++|+ ++++++...++.|++||...++ .+..+ ..+...+.+++|+
T Consensus 178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~--------~~~~~~~~~~~~~~~~~~~~ 249 (329)
T 3fvz_A 178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE--------FVREIKHASFGRNVFAISYI 249 (329)
T ss_dssp EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC--------EEEEECCTTTTTCEEEEEEE
T ss_pred EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc--------EEEEEeccccCCCcceeeec
Confidence 6555321 123678999998 7777777778899999976333 33333 3456678899999
Q ss_pred CCCCEEEEE-------eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEE
Q 013578 309 PNSEQIITA-------SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQW 380 (440)
Q Consensus 309 p~~~~l~s~-------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i 380 (440)
| +..+++. ..+..|++||+.++..+.... ....+......++++|+|.++++.. ++.|++
T Consensus 250 p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~-----------~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~ 317 (329)
T 3fvz_A 250 P-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFK-----------PVRKHFDMPHDIVASEDGTVYIGDAHTNTVWK 317 (329)
T ss_dssp T-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEEC-----------CSSSCCSSEEEEEECTTSEEEEEESSSCCEEE
T ss_pred C-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEc-----------CCCCccCCeeEEEECCCCCEEEEECCCCEEEE
Confidence 9 4333333 345589999988765432110 0112333467899999997666654 789999
Q ss_pred EEcCC
Q 013578 381 LSVET 385 (440)
Q Consensus 381 ~d~~~ 385 (440)
|+...
T Consensus 318 ~~~~~ 322 (329)
T 3fvz_A 318 FTLTE 322 (329)
T ss_dssp EEEEE
T ss_pred EeCCc
Confidence 99754
No 195
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.52 E-value=1.1e-11 Score=107.87 Aligned_cols=300 Identities=11% Similarity=0.000 Sum_probs=174.0
Q ss_pred EEEccCCCEEEEeeC-----CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeec-------CCcce
Q 013578 97 LCFSSDGKCLATACA-----DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHN-------LSGCS 164 (440)
Q Consensus 97 l~~s~dg~~l~t~s~-----dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~-------~~~~~ 164 (440)
....|+++.++.... ++.|.+.|..+.+.. ..+. .+ ... .++++||+++++++... .....
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~--~~I~--vG--~~P-~va~spDG~~lyVan~~~~r~~~G~~~~~ 110 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVI--GMID--GG--FLP-NPVVADDGSFIAHASTVFSRIARGERTDY 110 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEE--EEEE--EC--SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEE--EEEE--CC--CCC-cEEECCCCCEEEEEcccccccccCCCCCE
Confidence 445688888777754 678999998876422 1111 12 223 49999999999887631 01245
Q ss_pred EEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEee-CCceEEEEeCCCCceee
Q 013578 165 LYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCS-EGTDISIWHGKTGKLLG 243 (440)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~ 243 (440)
+.+++.............. + ........+..+.++|||+.++++.. .++.|.++|+.+++.+.
T Consensus 111 VsviD~~t~~v~~~I~v~~-------------g---~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~ 174 (386)
T 3sjl_D 111 VEVFDPVTLLPTADIELPD-------------A---PRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKR 174 (386)
T ss_dssp EEEECTTTCCEEEEEEETT-------------C---CCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred EEEEECCCCeEEEEEECCC-------------c---cccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEE
Confidence 6666665432111100000 0 00000113445667999995555544 37889999999999998
Q ss_pred eeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceE-EEEEc-CCCCEEEEEeCCC
Q 013578 244 NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVT-WLCFA-PNSEQIITASKDG 321 (440)
Q Consensus 244 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~-p~~~~l~s~~~dg 321 (440)
++..... ...+....+.+++.+.||++.+.++..... .... ....+.....++. ...|. ++|++++ .+.+|
T Consensus 175 tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~--v~~~-~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g 247 (386)
T 3sjl_D 175 MLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGT--PEIT-HTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTG 247 (386)
T ss_dssp EEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSC--CEEE-ECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTS
T ss_pred EEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCe--EEEe-ecceeccccccccccceeEcCCCcEEE-EeCCC
Confidence 8865331 223333455677777888888888754221 1000 0011111122222 24564 6776555 55589
Q ss_pred cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-----------CCEEEEEEcCCccchh
Q 013578 322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-----------GSTLQWLSVETGKVLD 390 (440)
Q Consensus 322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----------~~~i~i~d~~~~~~~~ 390 (440)
+|.+.|+.+...... .....+........-.......++++++++.+.+.. .+.|.++|+.+++.+.
T Consensus 248 ~V~v~d~~~~~~~v~--~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~ 325 (386)
T 3sjl_D 248 KIHQIDLSSGDAKFL--PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA 325 (386)
T ss_dssp EEEEEECTTSSCEEC--CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE
T ss_pred EEEEEECCCCcceee--cceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEE
Confidence 999999975431100 000000000000000112233588899988766642 2579999999999999
Q ss_pred hhhccccCCeEEEEecCCCCCCCCCcce-EEEE-eeCCCeEEEEeCCCCC
Q 013578 391 TAEKAHEGEITCMAWAPKTIPMGNQQVS-VLAT-SSVDKKVKLWLAPSLE 438 (440)
Q Consensus 391 ~~~~~h~~~v~~v~~~~~~~~~~~~~~~-~l~t-~~~Dg~i~vw~~~~~~ 438 (440)
.+..++ .++.|++++|+ + +|++ ...++.|.++|..+++
T Consensus 326 ~i~vg~--~~~~lavs~D~--------~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 326 KFEMGH--EIDSINVSQDE--------KPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp EEEEEE--EECEEEECSSS--------SCEEEEEETTTTEEEEEETTTCC
T ss_pred EEECCC--CcceEEECCCC--------CeEEEEEcCCCCeEEEEECCCCc
Confidence 886443 68999999997 4 5555 5569999999998876
No 196
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.51 E-value=9.5e-12 Score=111.55 Aligned_cols=255 Identities=12% Similarity=0.104 Sum_probs=150.8
Q ss_pred cceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccc
Q 013578 92 DSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEE 171 (440)
Q Consensus 92 ~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~ 171 (440)
.....|+|+++|+++++...++.|++||..++... ..... ..... ++|+++++.++++..+.
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~-----~~~~~-~~~~~-ia~~~~g~~l~~~d~~~----------- 192 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT-----TVHPG-FKGGK-PAVTKDKQRVYSIGWEG----------- 192 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE-----EEEET-CCBCB-CEECTTSSEEEEEBSST-----------
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE-----Eeecc-CCCCc-eeEecCCCcEEEEecCC-----------
Confidence 46889999999998888878899999998765321 11111 22233 77777766544332210
Q ss_pred cccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeee----eC
Q 013578 172 KAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNV----DT 247 (440)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~----~~ 247 (440)
...|.+|+...+.....+ ..
T Consensus 193 --------------------------------------------------------~~~I~~~d~~~~~~~~~~g~~~~~ 216 (409)
T 3hrp_A 193 --------------------------------------------------------THTVYVYMKASGWAPTRIGQLGST 216 (409)
T ss_dssp --------------------------------------------------------TCEEEEEEGGGTTCEEEEEECCTT
T ss_pred --------------------------------------------------------CceEEEEEcCCCceeEEeeeccch
Confidence 115666665544332222 21
Q ss_pred CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccce-E-EEEEcCC-CCEEEEEeCCCcEE
Q 013578 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAV-T-WLCFAPN-SEQIITASKDGTLR 324 (440)
Q Consensus 248 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v-~-~~~~~p~-~~~l~s~~~dg~i~ 324 (440)
....+.+++++|++..|+++..++.|+.||..... ...... ....++...- . .++|+|+ +.++++-..++.|+
T Consensus 217 ~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~---~~~~~~-~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~ 292 (409)
T 3hrp_A 217 FSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE---VTLIKQ-LELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVY 292 (409)
T ss_dssp SCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC---EEEEEE-CCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEE
T ss_pred hcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC---EEEEec-ccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEE
Confidence 34556789999965566667778889999875332 000000 0012222222 3 9999995 56666666788999
Q ss_pred EEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe--cCCEEEEEEcCCccchhhhhccc------
Q 013578 325 VWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT--HGSTLQWLSVETGKVLDTAEKAH------ 396 (440)
Q Consensus 325 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~--~~~~i~i~d~~~~~~~~~~~~~h------ 396 (440)
.|+.................. .-......-.....++++++|.++++- .++.|+.|+..+++..... ++
T Consensus 293 ~~~~~g~~~~~~g~~~~~g~~-dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~--g~~~~~g~ 369 (409)
T 3hrp_A 293 KITPDGECEWFCGSATQKTVQ-DGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA--GQVDVASQ 369 (409)
T ss_dssp EECTTCCEEEEEECTTCCSCB-CEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE--ECTTCBSC
T ss_pred EEecCCCEEEEEeCCCCCCcC-CCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe--CCCCCCCc
Confidence 998764311000000000000 000000001235679999999966664 4689999998777643221 22
Q ss_pred ---------cCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 397 ---------EGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 397 ---------~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
-.....+++++++ .++++-..+++|+.++++
T Consensus 370 ~~g~~~~~~~~~P~giavd~~g--------~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 370 IDGTPLEATFNYPYDICYDGEG--------GYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp CCBSTTTCCBSSEEEEEECSSS--------EEEEEESTTCEEEEEEEC
T ss_pred CCCChhceEeCCceEEEEcCCC--------CEEEEECCCCeEEEEEeC
Confidence 2468999999998 888888888999988763
No 197
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.50 E-value=6.6e-11 Score=101.79 Aligned_cols=241 Identities=10% Similarity=0.053 Sum_probs=154.9
Q ss_pred ccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEee
Q 013578 89 GHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMY 168 (440)
Q Consensus 89 ~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~ 168 (440)
.....+.+++++++|++.++...++.|.+|+.. +... ... .......+..+++.+++.
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~---~~~-~~~~~~~~~~i~~~~~g~----------------- 74 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK---EFE-VPTPDAKVMCLIVSSLGD----------------- 74 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE---EEE-CSSTTCCEEEEEECTTSC-----------------
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE---EEE-CCCCCCcceeEEECCCCC-----------------
Confidence 455688999999999988887778999999876 3211 111 111123445555554443
Q ss_pred ccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee-eeeC
Q 013578 169 GEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG-NVDT 247 (440)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-~~~~ 247 (440)
++++...++.|..||.. ++... .+..
T Consensus 75 ----------------------------------------------------l~v~~~~~~~v~~~d~~-g~~~~~~~~~ 101 (300)
T 2qc5_A 75 ----------------------------------------------------IWFTENGANKIGKLSKK-GGFTEYPLPQ 101 (300)
T ss_dssp ----------------------------------------------------EEEEETTTTEEEEECTT-SCEEEEECSS
T ss_pred ----------------------------------------------------EEEEecCCCeEEEECCC-CCeEEecCCC
Confidence 34444445668888876 54421 1222
Q ss_pred CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 013578 248 NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWN 327 (440)
Q Consensus 248 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd 327 (440)
....+..++++++|+++++...++.|..||.. +. .. ...+......+.+++++++++++++...++.|..||
T Consensus 102 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~---~~----~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 173 (300)
T 2qc5_A 102 PDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT---IY----EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRIT 173 (300)
T ss_dssp TTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC---EE----EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred CCCCCccceECCCCCEEEEccCCCeEEEECCC-CC---EE----EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEEC
Confidence 33567889999999887777667888888864 22 11 111222445689999999999666666678899998
Q ss_pred cCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEec
Q 013578 328 INVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWA 406 (440)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~ 406 (440)
.. +... .+. .......+..++++++|.+.++.. .+.|.+|+. +++........+...+.+++++
T Consensus 174 ~~-g~~~--------~~~-----~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d 238 (300)
T 2qc5_A 174 NT-GKLE--------EYP-----LPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAG 238 (300)
T ss_dssp TT-CCEE--------EEE-----CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred CC-CcEE--------Eee-----CCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEEC
Confidence 73 2211 010 011123466899999998777765 678999998 5554332112345678999999
Q ss_pred CCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 407 PKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 407 ~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
+++ .++++...++.|..|+..
T Consensus 239 ~~g--------~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 239 KNS--------EIWFTEWGANQIGRITND 259 (300)
T ss_dssp STT--------CEEEEETTTTEEEEECTT
T ss_pred CCC--------CEEEeccCCCeEEEECCC
Confidence 998 666666667889998873
No 198
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.49 E-value=4.1e-12 Score=111.99 Aligned_cols=223 Identities=14% Similarity=0.162 Sum_probs=129.6
Q ss_pred cceeEEEEccCCCEEEEeeCC---Cc--EEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC-----
Q 013578 92 DSVTGLCFSSDGKCLATACAD---GV--IRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS----- 161 (440)
Q Consensus 92 ~~V~~l~~s~dg~~l~t~s~d---g~--v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~----- 161 (440)
..+..++|||||++|+.++.+ +. |.+|++.+++. ..... .. . +..++|+|+++.|+.++.+..
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~--~~l~~---~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~ 131 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS--KKILE---AK-N-IRSLEWNEDSRKLLIVGFKRREDEDF 131 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE--EEEEE---ES-E-EEEEEECTTSSEEEEEEECCCC----
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce--EEEEc---CC-C-ccceeECCCCCEEEEEEccCCCcCCc
Confidence 568899999999999988754 34 66667765432 11221 11 3 889999999999998875310
Q ss_pred -------------------cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEE
Q 013578 162 -------------------GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTII 222 (440)
Q Consensus 162 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 222 (440)
...+++++. ........+... ......++|+| ++
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~------------------------~~~~~~~~l~~~-~~~~~~~spdg--~~ 184 (347)
T 2gop_A 132 IFEDDVPAWFDDLGFFDGEKTTFWIFDT------------------------ESEEVIEEFEKP-RFSSGIWHRDK--IV 184 (347)
T ss_dssp -----CCCC---------CEEEEEEEET------------------------TTTEEEEEEEEE-TTCEEEEETTE--EE
T ss_pred EEEcccceeecCcccccCccceEEEEEC------------------------CCCeEEeeecCC-CcccccCCCCe--EE
Confidence 122233322 221110111111 33445567888 55
Q ss_pred EEeeCC---------ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCC--------CEEEEEeEecCCCc
Q 013578 223 ASCSEG---------TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTA--------DVKVWEIVYSKDGL 285 (440)
Q Consensus 223 ~s~~~d---------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--------~i~i~d~~~~~~~~ 285 (440)
+++..+ ..|.++| +++. ..+..+ ..+. .++|+|++|+.++.++ .|.+|| .+.
T Consensus 185 ~~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~-~~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~--- 253 (347)
T 2gop_A 185 VNVPHREIIPQYFKFWDIYIWE--DGKE-EKMFEK-VSFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKE--- 253 (347)
T ss_dssp EEEECCCSSCCSSCCEEEEEEE--TTEE-EEEEEE-ESEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSC---
T ss_pred EEEecccccccccccccEEEeC--CCce-EEeccC-ccee--eECCCCCEEEEEEccccCCccccceEEEEC--CCc---
Confidence 555443 2455556 4543 333333 3333 3499999998887543 466666 221
Q ss_pred eeeeeeeeeeeccccceEE-EEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeC
Q 013578 286 VKAVTSVMQLKGHKSAVTW-LCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLS 364 (440)
Q Consensus 286 ~~~~~~~~~~~~h~~~v~~-~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 364 (440)
.......|...+.. +.|+ ++ ++++++.++.++|| +.++.. .. .. .+...+..++|+
T Consensus 254 -----~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~-------~~-----~~---~~~~~v~~~~~s 310 (347)
T 2gop_A 254 -----VMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI-------KP-----IA---KGRHWIMGFDVD 310 (347)
T ss_dssp -----EEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE-------EE-----EE---CSSSEEEEEEES
T ss_pred -----eEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce-------EE-----Ee---cCCCeEEeeeee
Confidence 22223455677886 9999 88 88999999999999 873211 00 11 113457889999
Q ss_pred CCCCEEEE-ecCCEE-EEEEcC
Q 013578 365 SDGKILAA-THGSTL-QWLSVE 384 (440)
Q Consensus 365 ~~g~~l~~-~~~~~i-~i~d~~ 384 (440)
| .++++ ..++.. .+|...
T Consensus 311 ~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 311 E--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp S--SEEEEEECSSSCCEEEEES
T ss_pred C--cEEEEEcCCCChHHheEeC
Confidence 9 55554 444432 555554
No 199
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.49 E-value=2.8e-11 Score=103.95 Aligned_cols=225 Identities=12% Similarity=0.116 Sum_probs=139.9
Q ss_pred ccCcceeEEEEccC-CCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEe
Q 013578 89 GHGDSVTGLCFSSD-GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYM 167 (440)
Q Consensus 89 ~H~~~V~~l~~s~d-g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~ 167 (440)
.+..---+..|+|+ +.++++...++.|..||..++... .. .....+.+++++++++.
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~---~~----~~~~~~~~i~~~~dG~l--------------- 67 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ---RV----TMDAPVSSVALRQSGGY--------------- 67 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE---EE----ECSSCEEEEEEBTTSSE---------------
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE---EE----eCCCceEEEEECCCCCE---------------
Confidence 34445668899995 556667677899999998865421 11 12355677777776652
Q ss_pred eccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeC
Q 013578 168 YGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDT 247 (440)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 247 (440)
+++ . +..|.+||..+++.......
T Consensus 68 ------------------------------------------------------~v~-~-~~~l~~~d~~~g~~~~~~~~ 91 (297)
T 3g4e_A 68 ------------------------------------------------------VAT-I-GTKFCALNWKEQSAVVLATV 91 (297)
T ss_dssp ------------------------------------------------------EEE-E-TTEEEEEETTTTEEEEEEEC
T ss_pred ------------------------------------------------------EEE-E-CCeEEEEECCCCcEEEEEec
Confidence 222 2 23477777776654322221
Q ss_pred ----CCCcccEEEecCCCCeEEEEecC---------CCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEE
Q 013578 248 ----NQLKNNMAAISPNGRFLAAAAFT---------ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQI 314 (440)
Q Consensus 248 ----~~~~v~~~~~s~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l 314 (440)
....+..++++|+|+++++...+ ....+|.+.... . ...+..+......++|+|+++.|
T Consensus 92 ~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g--~------~~~~~~~~~~pngi~~spdg~~l 163 (297)
T 3g4e_A 92 DNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH--H------VKKYFDQVDISNGLDWSLDHKIF 163 (297)
T ss_dssp CTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS--C------EEEEEEEESBEEEEEECTTSCEE
T ss_pred CCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC--C------EEEEeeccccccceEEcCCCCEE
Confidence 12346779999999976654332 345677664322 1 11122233456899999999876
Q ss_pred E-EEeCCCcEEEEecC--ccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchh
Q 013578 315 I-TASKDGTLRVWNIN--VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLD 390 (440)
Q Consensus 315 ~-s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~ 390 (440)
+ +.+.++.|.+||+. ++... ..+. .............++++++|.+.++.. ++.|..||..+++.+.
T Consensus 164 yv~~~~~~~i~~~~~d~~~G~~~-----~~~~----~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~ 234 (297)
T 3g4e_A 164 YYIDSLSYSVDAFDYDLQTGQIS-----NRRS----VYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQ 234 (297)
T ss_dssp EEEEGGGTEEEEEEECTTTCCEE-----EEEE----EEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEE
T ss_pred EEecCCCCcEEEEeccCCCCccc-----CcEE----EEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEE
Confidence 4 55567899999974 22110 0000 001111122356799999998777654 6889999999999888
Q ss_pred hhhccccCCeEEEEec-CCC
Q 013578 391 TAEKAHEGEITCMAWA-PKT 409 (440)
Q Consensus 391 ~~~~~h~~~v~~v~~~-~~~ 409 (440)
.+. .+...+++++|. |++
T Consensus 235 ~i~-~p~~~~t~~~f~g~d~ 253 (297)
T 3g4e_A 235 TVK-LPVDKTTSCCFGGKNY 253 (297)
T ss_dssp EEE-CSSSBEEEEEEESGGG
T ss_pred EEE-CCCCCceEEEEeCCCC
Confidence 773 566789999998 775
No 200
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.48 E-value=1.2e-11 Score=106.20 Aligned_cols=228 Identities=11% Similarity=0.045 Sum_probs=138.7
Q ss_pred cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEe-cCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRI-NLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
...+..+...+.+++++++|+++++...++.|.+||..++.... .... .......+..++++|+|+.+++....+..
T Consensus 61 ~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~--~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~ 138 (296)
T 3e5z_A 61 LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWES--IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGID 138 (296)
T ss_dssp EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEE--EECEETTEECCCCCCEEECTTSCEEEEECSHHHH
T ss_pred eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEE--EeeccCCCCCCCCCCEEECCCCCEEEECCccccc
Confidence 34455677889999999999988888778899999987654321 1111 11112456788999888766543210000
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCcee
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLL 242 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 242 (440)
. .+... . .......+.|..++.. ++.
T Consensus 139 ~---~~~~~---------------------------------------------~----~~~~~~~~~l~~~~~~-g~~- 164 (296)
T 3e5z_A 139 K---PEEGY---------------------------------------------G----GEMELPGRWVFRLAPD-GTL- 164 (296)
T ss_dssp C---GGGSS---------------------------------------------C----CCCCSSSCEEEEECTT-SCE-
T ss_pred c---ccccc---------------------------------------------c----ccccCCCcEEEEECCC-CCE-
Confidence 0 00000 0 0000012345555554 333
Q ss_pred eeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCce-eeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC
Q 013578 243 GNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLV-KAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG 321 (440)
Q Consensus 243 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg 321 (440)
..+..+......++|+|+++.|++.+.++.|.+|++... +.. .. ...+..+...+.+++++++|+++++. ++
T Consensus 165 ~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~--g~~~~~---~~~~~~~~~~p~~i~~d~~G~l~v~~--~~ 237 (296)
T 3e5z_A 165 SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNAR--GETEYQ---GVHFTVEPGKTDGLRVDAGGLIWASA--GD 237 (296)
T ss_dssp EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSS--SCEEEE---EEEECCSSSCCCSEEEBTTSCEEEEE--TT
T ss_pred EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCC--CcCcCC---CeEeeCCCCCCCeEEECCCCCEEEEc--CC
Confidence 333334455678999999999977777889999998621 111 11 11123355667889999999866655 78
Q ss_pred cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe-CCCCCEEEEecCCEEEEEEcCCccchh
Q 013578 322 TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL-SSDGKILAATHGSTLQWLSVETGKVLD 390 (440)
Q Consensus 322 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~g~~l~~~~~~~i~i~d~~~~~~~~ 390 (440)
.|.+||... ..+ ..+. .+.. +.+++| +|+++.|.+++.+.+.-++..+.++.+
T Consensus 238 ~v~~~~~~g-~~~-------~~~~-------~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 238 GVHVLTPDG-DEL-------GRVL-------TPQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNVRGLEH 291 (296)
T ss_dssp EEEEECTTS-CEE-------EEEE-------CSSC-CCEEEEESTTSCEEEEEETTEEEEEECSCCBCCC
T ss_pred eEEEECCCC-CEE-------EEEE-------CCCC-ceeEEEECCCCCEEEEEcCCeEEEEEcccccccc
Confidence 999999862 211 1111 1112 667889 689998888877788888887776654
No 201
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.47 E-value=5.6e-12 Score=121.46 Aligned_cols=257 Identities=13% Similarity=0.112 Sum_probs=153.3
Q ss_pred cccCcceeEEEEccCCCEEEE-----eeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc
Q 013578 88 KGHGDSVTGLCFSSDGKCLAT-----ACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG 162 (440)
Q Consensus 88 ~~H~~~V~~l~~s~dg~~l~t-----~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~ 162 (440)
++|...+..++|||||++||. |+.+.+|++||+.+++....... ......++|+ |++.|+.+..+..
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~------~~k~~~~~Ws-Dg~~l~y~~~~~~- 196 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK------DVKFSGISWL-GNEGFFYSSYDKP- 196 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE------EEESCCCEEE-TTTEEEEEESSCC-
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccC------CceeccEEEe-CCCEEEEEEecCc-
Confidence 357778999999999999984 33346799999998763211110 0124577899 9998888765511
Q ss_pred ceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce-
Q 013578 163 CSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL- 241 (440)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~- 241 (440)
++. .+........|++|++.++..
T Consensus 197 ------------------------------------------------------~~~-~~~~~~~~~~v~~~~lgt~~~~ 221 (693)
T 3iuj_A 197 ------------------------------------------------------DGS-ELSARTDQHKVYFHRLGTAQED 221 (693)
T ss_dssp ------------------------------------------------------C--------CCCCEEEEEETTSCGGG
T ss_pred ------------------------------------------------------ccc-cccccCCCcEEEEEECCCCccc
Confidence 000 111112345688999877642
Q ss_pred ---eeeeeC-CCCcccEEEecCCCCeEEEEec----CCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCE
Q 013578 242 ---LGNVDT-NQLKNNMAAISPNGRFLAAAAF----TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQ 313 (440)
Q Consensus 242 ---~~~~~~-~~~~v~~~~~s~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 313 (440)
+..... +......+.++|||++|+.... +..|+++|+..+.. ....+..+....... ++++|..
T Consensus 222 ~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~-------~~~~l~~~~~~~~~~-~~~~g~~ 293 (693)
T 3iuj_A 222 DRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA-------PLLTVQGDLDADVSL-VDNKGST 293 (693)
T ss_dssp CEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC-------CCEEEECSSSSCEEE-EEEETTE
T ss_pred ceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC-------ceEEEeCCCCceEEE-EeccCCE
Confidence 222222 2334567899999998876543 24788888755431 233444555555555 5666665
Q ss_pred EEE-EeCC---CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CC--EEEEEEcCC
Q 013578 314 IIT-ASKD---GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GS--TLQWLSVET 385 (440)
Q Consensus 314 l~s-~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~--~i~i~d~~~ 385 (440)
|+. ...+ +.|..+|+.++... ..+.+ .. . ...+. .|+++++.|+... ++ .|++|++..
T Consensus 294 l~~~t~~~~~~~~l~~~d~~~~~~~-----~~~~l----~~-~--~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g 359 (693)
T 3iuj_A 294 LYLLTNRDAPNRRLVTVDAANPGPA-----HWRDL----IP-E--RQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEG 359 (693)
T ss_dssp EEEEECTTCTTCEEEEEETTSCCGG-----GCEEE----EC-C--CSSCE--EEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred EEEEECCCCCCCEEEEEeCCCCCcc-----ccEEE----ec-C--CCCEE--EEEEECCEEEEEEEECCeeEEEEEECCC
Confidence 554 4333 57888998754220 01111 11 1 11122 8899999887653 44 788999875
Q ss_pred ccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCC----CeEEEEeCCCCC
Q 013578 386 GKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD----KKVKLWLAPSLE 438 (440)
Q Consensus 386 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D----g~i~vw~~~~~~ 438 (440)
+.. ..+...+.+.+..+.+++++ ..|+....+ +++..||+.+++
T Consensus 360 ~~~-~~l~~p~~~~~~~~~~~~d~--------~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 360 KRV-REVALPGLGSVSGFNGKHDD--------PALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp CEE-EEECCSSSSEEEECCCCTTC--------SCEEEEEECSSSCCEEEEECTTTCC
T ss_pred Cee-EEeecCCCceEEeeecCCCC--------CEEEEEecCCCCCCEEEEEECCCCe
Confidence 543 33322455678888888876 444433333 789999987764
No 202
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.47 E-value=1.3e-11 Score=104.60 Aligned_cols=202 Identities=9% Similarity=-0.013 Sum_probs=129.4
Q ss_pred cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeec
Q 013578 90 HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYG 169 (440)
Q Consensus 90 H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~ 169 (440)
+...+.+++++++|+++++.. ++.|.+|+....... .........+..+++.++++
T Consensus 65 ~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-----~~~~~~~~~p~~i~~~~~g~------------------ 120 (270)
T 1rwi_B 65 GLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-----VLPFDGLNYPEGLAVDTQGA------------------ 120 (270)
T ss_dssp SCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-----ECCCCSCSSEEEEEECTTCC------------------
T ss_pred CcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-----eeecCCcCCCcceEECCCCC------------------
Confidence 345788999999999766665 889999997654321 11111113445555555443
Q ss_pred cccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCC
Q 013578 170 EEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQ 249 (440)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 249 (440)
++++...++.|.+|+..+...........
T Consensus 121 ---------------------------------------------------l~v~~~~~~~i~~~~~~~~~~~~~~~~~~ 149 (270)
T 1rwi_B 121 ---------------------------------------------------VYVADRGNNRVVKLAAGSKTQTVLPFTGL 149 (270)
T ss_dssp ---------------------------------------------------EEEEEGGGTEEEEECTTCCSCEECCCCSC
T ss_pred ---------------------------------------------------EEEEECCCCEEEEEECCCceeEeeccccC
Confidence 44444445667777655444332222223
Q ss_pred CcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 013578 250 LKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNIN 329 (440)
Q Consensus 250 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~ 329 (440)
..+..++++++|+++++...++.|.+||..... .......+...+.+++++++|.++++...++.|.+||..
T Consensus 150 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~ 221 (270)
T 1rwi_B 150 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN--------QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG 221 (270)
T ss_dssp CSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC--------EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred CCceeEEEeCCCCEEEEECCCCEEEEEecCCCc--------eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence 456889999999977776677899999864332 111112233568899999999777777778899999986
Q ss_pred ccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccc
Q 013578 330 VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKV 388 (440)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~ 388 (440)
...... . ...+...+..++++++|+++++.. ++.|++|+....+.
T Consensus 222 ~~~~~~--------~------~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 222 STTSTV--------L------PFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CSCCEE--------C------CCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CCccee--------e------ccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 532110 0 011123467899999999776654 89999999876654
No 203
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.46 E-value=1e-12 Score=114.93 Aligned_cols=130 Identities=9% Similarity=-0.029 Sum_probs=92.3
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~ 300 (440)
.|+++ .++.|++||+.+.........+...+..+.+.+. .+++++.||.|.+||+..+. .. .+..
T Consensus 99 ~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~--------~~----~~~~ 163 (388)
T 1xip_A 99 QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS--------TK----QLAQ 163 (388)
T ss_dssp EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC--------EE----EEEE
T ss_pred EEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCc--------cc----cccC
Confidence 55555 6788999999877666566666667777666544 38889999999999986443 11 1456
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccc--cCCCCCeeeeeeEEeCCCCCEEEE
Q 013578 301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPL--LDSNGATLQYDRLSLSSDGKILAA 372 (440)
Q Consensus 301 ~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~ 372 (440)
.|+|++|+|+| ++.|..||++++|+......-. ...++.+. ....++...|.++.|.+++.++++
T Consensus 164 ~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~-----k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 164 NVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEK-----QFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp SEEEEEECSSE--EEEEETTSCEEEEEEETTEEEE-----EEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred CceEEEEcCCc--eEEEEcCCcEEEEcCCCccccc-----cceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 89999999999 6789999999999887543200 11111111 111235678999999999999987
No 204
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.46 E-value=8.2e-11 Score=103.92 Aligned_cols=251 Identities=10% Similarity=0.033 Sum_probs=148.7
Q ss_pred EEEEccCCCEEEEee----------CCCcEEEEecCCCCCcceeeEEec----CCCCCCCceEEEccCCCeEEEEeecCC
Q 013578 96 GLCFSSDGKCLATAC----------ADGVIRVHKLDDASSKSFKFLRIN----LPPGGPPTAVAFADNATSIVVATHNLS 161 (440)
Q Consensus 96 ~l~~s~dg~~l~t~s----------~dg~v~vW~~~~~~~~~~~~~~~~----~~~~~~v~~v~~~~~~~~l~~~~~~~~ 161 (440)
.++++|||++|+.+. .++.|.+||..+.+.. ..+... .........++|+|||++++++....
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~--~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~- 146 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPI--ADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA- 146 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEE--EEEECCCccccccCCCccceEECCCCCEEEEEecCC-
Confidence 999999999999886 3678999999865422 111111 00123466899999999999986431
Q ss_pred cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578 162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL 241 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 241 (440)
...+.+++ ........ .++ ...+..+.+++...+++.+.||.+.++|. +++.
T Consensus 147 ~~~v~viD-~t~~~~~~-----~i~---------------------~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~ 198 (373)
T 2mad_H 147 GPAVGLVV-QGGSSDDQ-----LLS---------------------SPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGA 198 (373)
T ss_pred CCeEEEEE-CCCCEEeE-----EcC---------------------CCceEEEEeCCCceEEEEcCCCCEEEEEC-CCcE
Confidence 23455555 33311100 000 00011224555556777788999999999 8876
Q ss_pred eeeee-----CCCCcc-cEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeee----eeeccccceEEEEEcCCC
Q 013578 242 LGNVD-----TNQLKN-NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM----QLKGHKSAVTWLCFAPNS 311 (440)
Q Consensus 242 ~~~~~-----~~~~~v-~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----~~~~h~~~v~~~~~~p~~ 311 (440)
+.... ....++ ....+.+++..++..+..+.+.+.|+..........+.... ...-.......+.++|++
T Consensus 199 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~ 278 (373)
T 2mad_H 199 AGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSS 278 (373)
T ss_pred EEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCC
Confidence 63322 111111 22355666665555557888999888543210000000000 000011224457899999
Q ss_pred CEEEEEeC----------CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEec--CCEE
Q 013578 312 EQIITASK----------DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATH--GSTL 378 (440)
Q Consensus 312 ~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~--~~~i 378 (440)
+.++.... ++.|.++|+.+.+.+.. ++. . .....++|+|||+ +++++. ++.|
T Consensus 279 ~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~-------i~~-----g---~~p~~i~~s~Dg~~~l~v~~~~~~~V 343 (373)
T 2mad_H 279 DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQ-------ISL-----G---HDVDAISVAQDGGPDLYALSAGTEVL 343 (373)
T ss_pred CEEEEEeccCCcccccCCCCeEEEEECCCCEEEEE-------EEC-----C---CCcCeEEECCCCCeEEEEEcCCCCeE
Confidence 88877653 35799999987654321 111 0 1245799999999 666654 7999
Q ss_pred EEEEcCCccchhhh
Q 013578 379 QWLSVETGKVLDTA 392 (440)
Q Consensus 379 ~i~d~~~~~~~~~~ 392 (440)
.++|..+++.+..+
T Consensus 344 ~ViD~~t~~vv~~i 357 (373)
T 2mad_H 344 HIYDAGAGDQDQST 357 (373)
T ss_pred EEEECCCCCEEeee
Confidence 99999999988773
No 205
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.45 E-value=5.7e-11 Score=105.47 Aligned_cols=295 Identities=9% Similarity=0.017 Sum_probs=171.4
Q ss_pred cCCCEEEEeeC-C----CcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeec-------CCcceEEee
Q 013578 101 SDGKCLATACA-D----GVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHN-------LSGCSLYMY 168 (440)
Q Consensus 101 ~dg~~l~t~s~-d----g~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~-------~~~~~~~~~ 168 (440)
+++++++.... + +.|.+.|..+.+.. .....+ ... .++++||+++++++... .....+.++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv----~~I~vG--~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~Vsvi 154 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRIL----GMTDGG--FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVF 154 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEE----EEEEEC--SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEE----EEEECC--CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEE
Confidence 36665555543 2 68999999876432 111112 334 89999999999988631 012456666
Q ss_pred ccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeC-CceEEEEeCCCCceeeeeeC
Q 013578 169 GEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSE-GTDISIWHGKTGKLLGNVDT 247 (440)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~ 247 (440)
+............... ........+..+.+++||+.++++... ++.|.+.|+.+++.+..+..
T Consensus 155 D~~t~~vv~~I~v~g~----------------~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v 218 (426)
T 3c75_H 155 DPVTFLPIADIELPDA----------------PRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV 218 (426)
T ss_dssp CTTTCCEEEEEEETTC----------------CCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred ECCCCcEEEEEECCCc----------------cccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc
Confidence 6554321111000000 000001224556779999955554433 68899999999999888875
Q ss_pred CCCcccEEEecCCC-CeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccce-EEEEEcCCCCEEEEEeCCCcEEE
Q 013578 248 NQLKNNMAAISPNG-RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAV-TWLCFAPNSEQIITASKDGTLRV 325 (440)
Q Consensus 248 ~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v-~~~~~~p~~~~l~s~~~dg~i~i 325 (440)
... ....|++ ..+++.+.||++.+.++..++ .... ....+.....++ ..+.|.+++..++..+..+.|.+
T Consensus 219 ~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~---v~~~-~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~V 290 (426)
T 3c75_H 219 PDC----YHIFPASPTVFYMNCRDGSLARVDFADGE---TKVT-NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQ 290 (426)
T ss_dssp CSE----EEEEEEETTEEEEEETTSSEEEEECCTTC---CEEE-ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEE
T ss_pred CCc----eeeccCCCcEEEEEcCCCCEEEEECCCCc---EEEE-eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEE
Confidence 332 2333433 455666678887777762222 0000 001111111222 23567899888777778899999
Q ss_pred EecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-----------CCEEEEEEcCCccchhhhhc
Q 013578 326 WNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-----------GSTLQWLSVETGKVLDTAEK 394 (440)
Q Consensus 326 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----------~~~i~i~d~~~~~~~~~~~~ 394 (440)
.|+.......... ....................++++|+++.+.+.. ++.|.++|..+.+.+..+..
T Consensus 291 iD~~~~~~~v~~~--~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 291 ADLTAEGATFRAP--IEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEECSSCEEECCC--EESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EeccCCceEEeee--eeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 9986432110000 0000000000000011122478999988666542 25799999999999998853
Q ss_pred cccCCeEEEEecCCCCCCCCCcce-EEEEee-CCCeEEEEeCCCCC
Q 013578 395 AHEGEITCMAWAPKTIPMGNQQVS-VLATSS-VDKKVKLWLAPSLE 438 (440)
Q Consensus 395 ~h~~~v~~v~~~~~~~~~~~~~~~-~l~t~~-~Dg~i~vw~~~~~~ 438 (440)
+ .....++|+||+ + +++++. .++.|.|+|+.+++
T Consensus 369 g--~~P~gia~spDg--------~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 369 G--HEIDSINVSQDA--------EPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp E--EEECEEEECCSS--------SCEEEEEETTTTEEEEEETTTCC
T ss_pred C--CCcCeEEEccCC--------CEEEEEEcCCCCeEEEEECCCCC
Confidence 3 358999999998 6 777777 59999999998876
No 206
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.45 E-value=1.4e-12 Score=114.15 Aligned_cols=161 Identities=7% Similarity=0.010 Sum_probs=115.8
Q ss_pred ccCCCCCeEEEEeeCCceEEEEeCCCCc-----------eeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEec
Q 013578 213 YGTADGSTIIASCSEGTDISIWHGKTGK-----------LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYS 281 (440)
Q Consensus 213 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~-----------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 281 (440)
..++... ++++|+.++ +.+|++...+ ...... ... |+.++| ++++|+++ .++.|++||++..
T Consensus 44 ais~~~g-ll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl 116 (388)
T 1xip_A 44 DISNSKS-LFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF--HGDQVLVS-TRNALYSLDLEEL 116 (388)
T ss_dssp EEETTTT-EEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE--ETTEEEEE-ESSEEEEEESSST
T ss_pred EEcCCCC-EEEEeCCCE-EEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhh
Confidence 3355666 788888886 7779865332 112233 344 999999 99999999 8899999998665
Q ss_pred CCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeE
Q 013578 282 KDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRL 361 (440)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 361 (440)
. .......|...+.++.+.+. .+++++.||.|.+||+..+.... ....|+++
T Consensus 117 ~--------~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~------------------~~~~Vs~v 168 (388)
T 1xip_A 117 S--------EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ------------------LAQNVTSF 168 (388)
T ss_dssp T--------CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE------------------EEESEEEE
T ss_pred h--------ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc------------------ccCCceEE
Confidence 4 22234456677888777654 38889999999999998553210 23458999
Q ss_pred EeCCCCCEEEEecCCEEEEEEcCCccc--hhhh------h--ccccCCeEEEEecCCC
Q 013578 362 SLSSDGKILAATHGSTLQWLSVETGKV--LDTA------E--KAHEGEITCMAWAPKT 409 (440)
Q Consensus 362 ~~s~~g~~l~~~~~~~i~i~d~~~~~~--~~~~------~--~~h~~~v~~v~~~~~~ 409 (440)
+|||+| +.++..||.+++|+...++. ...+ . .+|...|.+|.|.+++
T Consensus 169 ~WSpkG-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~ 225 (388)
T 1xip_A 169 DVTNSQ-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ 225 (388)
T ss_dssp EECSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred EEcCCc-eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC
Confidence 999999 45556699999998887774 3333 1 1477889999999987
No 207
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.43 E-value=1.2e-11 Score=108.55 Aligned_cols=188 Identities=10% Similarity=0.031 Sum_probs=106.7
Q ss_pred CceEEEEeCCCCceeeeeeCC------CCcccEEEecCCCCeEEEE-e---cCCCEEEEEeEecCCCceee------e-e
Q 013578 228 GTDISIWHGKTGKLLGNVDTN------QLKNNMAAISPNGRFLAAA-A---FTADVKVWEIVYSKDGLVKA------V-T 290 (440)
Q Consensus 228 d~~i~vwd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~-~---~dg~i~i~d~~~~~~~~~~~------~-~ 290 (440)
+..|.+||+.+++.+..+... ...+..+++++++..++++ . .++.|.+||+..++...... . .
T Consensus 92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~ 171 (343)
T 2qe8_A 92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPED 171 (343)
T ss_dssp CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCS
T ss_pred CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccc
Confidence 456888999888876666532 2345789999865555444 3 57889999975432100000 0 0
Q ss_pred eeeeeec--------------cccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCcccccc-ccccCCCCCe
Q 013578 291 SVMQLKG--------------HKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLP-IPLLDSNGAT 355 (440)
Q Consensus 291 ~~~~~~~--------------h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 355 (440)
......+ ....+..|+|+|+++.|+.+..++. ++|.+................. .... ++.
T Consensus 172 ~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~---g~~ 247 (343)
T 2qe8_A 172 IDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERY---SEK 247 (343)
T ss_dssp CCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEE---EEC
T ss_pred cceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEec---ccC
Confidence 0000000 0123688999999998888877663 5555442211100000000000 0000 111
Q ss_pred eeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCC
Q 013578 356 LQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDK 427 (440)
Q Consensus 356 ~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg 427 (440)
.....++++++|.++++.. ++.|.+||..+++........+...+.+++|.+++ .++++.+..+
T Consensus 248 g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g--------~l~v~~~~~~ 312 (343)
T 2qe8_A 248 PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDG--------YLYFDCNQLH 312 (343)
T ss_dssp CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTS--------CEEEEECCGG
T ss_pred CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCC--------cEEEEeCccc
Confidence 1245699999999877764 78999999866664332211234568999999987 6777766443
No 208
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.42 E-value=1.1e-11 Score=120.69 Aligned_cols=179 Identities=13% Similarity=0.077 Sum_probs=112.1
Q ss_pred ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCC--------------EEEEEeEecCCCceeeeeeeee
Q 013578 229 TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTAD--------------VKVWEIVYSKDGLVKAVTSVMQ 294 (440)
Q Consensus 229 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~--------------i~i~d~~~~~~~~~~~~~~~~~ 294 (440)
..|++||+.+++.+... .+...+..++|+|| +.|+.++.++. |++|++.++.. ....+..
T Consensus 189 ~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~----~~~lv~~ 262 (741)
T 1yr2_A 189 RTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS----ADQPVFA 262 (741)
T ss_dssp EEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGG----GCEEEEC
T ss_pred EEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCch----hCEEEec
Confidence 45999999998875432 12223457899999 99998887654 77777643321 0112333
Q ss_pred eeccccceEEEEEcCCCCEEEEEeCCC-----cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCE
Q 013578 295 LKGHKSAVTWLCFAPNSEQIITASKDG-----TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKI 369 (440)
Q Consensus 295 ~~~h~~~v~~~~~~p~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 369 (440)
...+...+.++.|+|||++|+..+.++ .|++||+.++.. .....+ ..... .+... ++|+|+.
T Consensus 263 ~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~-----~~~~~l----~~~~~---~~~~~-~~~dg~~ 329 (741)
T 1yr2_A 263 TPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI-----GPVTAL----IPDLK---AQWDF-VDGVGDQ 329 (741)
T ss_dssp CTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE-----CCCEEE----ECSSS---SCEEE-EEEETTE
T ss_pred cCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC-----cccEEe----cCCCC---ceEEE-EeccCCE
Confidence 333444688999999999988777544 799999875410 001111 11111 11122 3488887
Q ss_pred EEEec-----CCEEEEEEcCCcc-chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 370 LAATH-----GSTLQWLSVETGK-VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 370 l~~~~-----~~~i~i~d~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
|+... ++.|.+||+.++. ....+...+...+..++|.. + .++++...|+..+||.++
T Consensus 330 l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~-~--------~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 330 LWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAG-N--------RLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp EEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEB-T--------EEEEEEEETTEEEEEEEE
T ss_pred EEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEEC-C--------EEEEEEEECCEEEEEEEe
Confidence 76543 3579999998752 33333234555677888884 3 688999999988888654
No 209
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.41 E-value=6e-11 Score=102.35 Aligned_cols=239 Identities=10% Similarity=0.045 Sum_probs=140.7
Q ss_pred ccccccccCcceeEEEEccCCC-EEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC
Q 013578 83 DVNTLKGHGDSVTGLCFSSDGK-CLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS 161 (440)
Q Consensus 83 ~~~~l~~H~~~V~~l~~s~dg~-~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~ 161 (440)
.+..+..+.....+..|+|+|+ +++++..++.|..|+.. +.. .... .....+..++++++|+.+
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~---~~~~---~~~~~~~gl~~d~dG~l~-------- 100 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV---DVLL---DATAFTNGNAVDAQQRLV-------- 100 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE---EEEE---ESCSCEEEEEECTTSCEE--------
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE---EEEe---CCCCccceeeECCCCCEE--------
Confidence 3455666667788999999998 66677788999999873 321 1111 123456677777766532
Q ss_pred cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578 162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL 241 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 241 (440)
++...++.|.+|+.. ++.
T Consensus 101 -------------------------------------------------------------v~~~~~~~v~~~~~~-g~~ 118 (305)
T 3dr2_A 101 -------------------------------------------------------------HCEHGRRAITRSDAD-GQA 118 (305)
T ss_dssp -------------------------------------------------------------EEETTTTEEEEECTT-SCE
T ss_pred -------------------------------------------------------------EEECCCCEEEEECCC-CCE
Confidence 222223345555553 332
Q ss_pred eeeee---C-CCCcccEEEecCCCCeEEE----Eec-------------CCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578 242 LGNVD---T-NQLKNNMAAISPNGRFLAA----AAF-------------TADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300 (440)
Q Consensus 242 ~~~~~---~-~~~~v~~~~~s~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~ 300 (440)
..... . ....+..++++++|+++++ |.. .+.|+.||...++ ...+. ...
T Consensus 119 ~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~---------~~~~~-~~~ 188 (305)
T 3dr2_A 119 HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP---------LQRMA-DLD 188 (305)
T ss_dssp EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC---------CEEEE-EES
T ss_pred EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc---------EEEEe-cCC
Confidence 11111 0 1123567899999998876 332 1334444432222 11111 334
Q ss_pred ceEEEEEcCCCCEEEEEeCC------CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec
Q 013578 301 AVTWLCFAPNSEQIITASKD------GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH 374 (440)
Q Consensus 301 ~v~~~~~~p~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 374 (440)
....++|+|+++.|+.+... +.|.+|++.... +.. ...+ ... .......++++++|++.++.
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~----~~~~----~~~--~~~~pdgi~~d~~G~lwv~~- 256 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHD----RRHF----ASV--PDGLPDGFCVDRGGWLWSSS- 256 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEE----EEEE----ECC--SSSCCCSEEECTTSCEEECC-
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccC----CeEE----EEC--CCCCCCeEEECCCCCEEEec-
Confidence 56889999999988777654 689999987432 100 0000 000 01123468999999966555
Q ss_pred CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEE
Q 013578 375 GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKL 431 (440)
Q Consensus 375 ~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~v 431 (440)
.+.|.+|+. +++.+..+. .+. .+.+++|.+++ +.|..++.++..++
T Consensus 257 ~~gv~~~~~-~g~~~~~~~-~~~-~~~~~~f~~d~--------~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 257 GTGVCVFDS-DGQLLGHIP-TPG-TASNCTFDQAQ--------QRLFITGGPCLWML 302 (305)
T ss_dssp SSEEEEECT-TSCEEEEEE-CSS-CCCEEEECTTS--------CEEEEEETTEEEEE
T ss_pred CCcEEEECC-CCCEEEEEE-CCC-ceeEEEEeCCC--------CEEEEEcCCeEEEE
Confidence 456999998 566666653 233 58999999887 66776666654433
No 210
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.40 E-value=2.2e-11 Score=106.04 Aligned_cols=265 Identities=12% Similarity=0.082 Sum_probs=153.5
Q ss_pred EEEEccCCCEEEEee----------CCCcEEEEecCCCCCcceeeEEecC----CCCCCCceEEEccCCCeEEEEeecCC
Q 013578 96 GLCFSSDGKCLATAC----------ADGVIRVHKLDDASSKSFKFLRINL----PPGGPPTAVAFADNATSIVVATHNLS 161 (440)
Q Consensus 96 ~l~~s~dg~~l~t~s----------~dg~v~vW~~~~~~~~~~~~~~~~~----~~~~~v~~v~~~~~~~~l~~~~~~~~ 161 (440)
.++++|||++|+.++ .++.|.+||..+.+.. ..+.... ..+.....++|+|||++++++....
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~--~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~- 158 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPT--ADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP- 158 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE--EEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS-
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEE--EEEECCCccccccCCCCceEEEcCCCCEEEEEEcCC-
Confidence 499999999888775 3678999999886532 1222111 1124678899999999998876421
Q ss_pred cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC-Cc
Q 013578 162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT-GK 240 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~ 240 (440)
...+.+++............ ..+....|.+...+++.+.||.+.+.++.+ ++
T Consensus 159 ~~~VsVID~~t~~vv~tI~v---------------------------~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~ 211 (386)
T 3sjl_D 159 APAVGVVDLEGKAFKRMLDV---------------------------PDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGT 211 (386)
T ss_dssp SCEEEEEETTTTEEEEEEEC---------------------------CSEEEEEEEETTEEEEEETTSCEEEEECCSSSC
T ss_pred CCeEEEEECCCCcEEEEEEC---------------------------CCcceeecCCCceeEEECCCCCEEEEECCCCCe
Confidence 24566666544321111000 000011233333566777788888888875 55
Q ss_pred eeeeeeCC----CCccc-EEEe-cCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee--e-ec-cccceEEEEEcCC
Q 013578 241 LLGNVDTN----QLKNN-MAAI-SPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ--L-KG-HKSAVTWLCFAPN 310 (440)
Q Consensus 241 ~~~~~~~~----~~~v~-~~~~-s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~-~~-h~~~v~~~~~~p~ 310 (440)
........ ..++. ...| .++|++++ .+.+|+|++.|+..........+..... . .+ ..+....++++|+
T Consensus 212 v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~ 290 (386)
T 3sjl_D 212 PEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA 290 (386)
T ss_dssp CEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETT
T ss_pred EEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCC
Confidence 43211111 11221 1355 36776555 5568999999975432100000000000 0 00 1233445778999
Q ss_pred CCEEEEEeC----------CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEec--CCE
Q 013578 311 SEQIITASK----------DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATH--GST 377 (440)
Q Consensus 311 ~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~--~~~ 377 (440)
++.++.... ..+|.+.|+.+.+.+.. +.. ...+..+++++|++ +|+++. ++.
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~-------i~v--------g~~~~~lavs~D~~~~ly~tn~~~~~ 355 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAK-------FEM--------GHEIDSINVSQDEKPLLYALSTGDKT 355 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE-------EEE--------EEEECEEEECSSSSCEEEEEETTTTE
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEE-------EEC--------CCCcceEEECCCCCeEEEEEcCCCCe
Confidence 988877643 24799999987754421 111 12466899999997 666543 799
Q ss_pred EEEEEcCCccchhhhhccccCCeEEEEecCC
Q 013578 378 LQWLSVETGKVLDTAEKAHEGEITCMAWAPK 408 (440)
Q Consensus 378 i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~ 408 (440)
|.++|..+++.+.++. ..+.-+.|.+++|
T Consensus 356 VsViD~~t~k~~~~i~--~~~~p~~l~~s~d 384 (386)
T 3sjl_D 356 LYIHDAESGEELRSVN--QLGHGPQVITTAD 384 (386)
T ss_dssp EEEEETTTCCEEEEEC--CCCSSCCEEEECC
T ss_pred EEEEECCCCcEEEEec--CCCCCceeEECCc
Confidence 9999999999988874 3344555555554
No 211
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.39 E-value=2.5e-10 Score=98.07 Aligned_cols=237 Identities=9% Similarity=0.068 Sum_probs=149.1
Q ss_pred CCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCC
Q 013578 139 GPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADG 218 (440)
Q Consensus 139 ~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (440)
..+.++++.++++..++...+ ..+..++........ .... .. ..+..+...++|
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~---~~v~~~d~~~~~~~~---------------~~~~-~~-------~~~~~i~~~~~g 68 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKA---NMISCINLDGKITEY---------------PLPT-PD-------AKVMCLTISSDG 68 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTT---TEEEEECTTCCEEEE---------------ECSS-TT-------CCEEEEEECTTS
T ss_pred CCccceEECCCCCEEEEecCC---CcEEEEcCCCCeEEe---------------cCCc-cc-------CceeeEEECCCC
Confidence 568899999998866654322 345555543111000 0000 00 112223345777
Q ss_pred CeEEEEeeCCceEEEEeCCCCceeeeee--CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee
Q 013578 219 STIIASCSEGTDISIWHGKTGKLLGNVD--TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK 296 (440)
Q Consensus 219 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 296 (440)
. ++++...++.|..||.. ++. ..+. .....+..++++++|+++++...++.|..||. .+. . ......
T Consensus 69 ~-l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~---~----~~~~~~ 137 (299)
T 2z2n_A 69 E-VWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK---I----REYELP 137 (299)
T ss_dssp C-EEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC---E----EEEECS
T ss_pred C-EEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC---E----EEecCC
Confidence 6 66666667889999976 433 2232 23456788999999988877777888999986 222 1 111222
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-C
Q 013578 297 GHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-G 375 (440)
Q Consensus 297 ~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~ 375 (440)
.+...+.+++++++|..+++...++.|..||. ++.... +.. ......+..++++++|.++++.. +
T Consensus 138 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~--------~~~-----~~~~~~~~~i~~~~~g~l~v~~~~~ 203 (299)
T 2z2n_A 138 NKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE--------FKI-----PTPASGPVGITKGNDDALWFVEIIG 203 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE--------EEC-----SSTTCCEEEEEECTTSSEEEEETTT
T ss_pred CCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE--------eeC-----CCCCCcceeEEECCCCCEEEEccCC
Confidence 34456899999999987777767789999998 432210 000 01122356899999999777654 7
Q ss_pred CEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 376 STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 376 ~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
+.|.+||. +++........+...+.++++++++ .++++...++.|.+|+..
T Consensus 204 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g--------~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 204 NKIGRITT-SGEITEFKIPTPNARPHAITAGAGI--------DLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp TEEEEECT-TCCEEEEECSSTTCCEEEEEECSTT--------CEEEEETTTTEEEEEETT
T ss_pred ceEEEECC-CCcEEEEECCCCCCCceeEEECCCC--------CEEEeccCCceEEEECCC
Confidence 89999999 6664332112345679999999998 666666577889999873
No 212
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.39 E-value=6.1e-10 Score=96.86 Aligned_cols=220 Identities=15% Similarity=0.181 Sum_probs=133.0
Q ss_pred ceeEEEEccCC-CEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccc
Q 013578 93 SVTGLCFSSDG-KCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEE 171 (440)
Q Consensus 93 ~V~~l~~s~dg-~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~ 171 (440)
-..+..|+|++ .++++...++.|..|+..++... .. . ....+.+++|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~---~~--~--~~~~v~~i~~~~dg~l------------------- 103 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT---VH--A--LPFMGSALAKISDSKQ------------------- 103 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE---EE--E--CSSCEEEEEEEETTEE-------------------
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE---EE--E--CCCcceEEEEeCCCeE-------------------
Confidence 35678999974 55666667889999998765321 11 1 1245677777766542
Q ss_pred cccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeC----
Q 013578 172 KAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDT---- 247 (440)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~---- 247 (440)
+++ +.++ |.+||..+++.......
T Consensus 104 --------------------------------------------------~v~-~~~g-l~~~d~~~g~~~~~~~~~~~~ 131 (326)
T 2ghs_A 104 --------------------------------------------------LIA-SDDG-LFLRDTATGVLTLHAELESDL 131 (326)
T ss_dssp --------------------------------------------------EEE-ETTE-EEEEETTTCCEEEEECSSTTC
T ss_pred --------------------------------------------------EEE-ECCC-EEEEECCCCcEEEEeeCCCCC
Confidence 222 2333 77788776664322221
Q ss_pred CCCcccEEEecCCCCeEEEEecC----CCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEE-eCCCc
Q 013578 248 NQLKNNMAAISPNGRFLAAAAFT----ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA-SKDGT 322 (440)
Q Consensus 248 ~~~~v~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~-~~dg~ 322 (440)
....+..++++|+|+++++...+ +...||.+. .. . ...+..+......++|+|+++.|+.+ +.++.
T Consensus 132 ~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g--~------~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 132 PGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KG--K------VTKLFADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp TTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TT--E------EEEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred CCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CC--c------EEEeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 12346789999999876654322 345666655 21 1 11122233456789999999876554 45789
Q ss_pred EEEEecC--ccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCC
Q 013578 323 LRVWNIN--VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGE 399 (440)
Q Consensus 323 i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~ 399 (440)
|.+||+. ++..+.. .+.+ ............++++++|.+.++.. ++.|.+|+. +++.+..+ ..+...
T Consensus 203 I~~~d~~~~~Gl~~~~----~~~~----~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i-~~~~~~ 272 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGK----AEVF----IDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARY-EVPGKQ 272 (326)
T ss_dssp EEEEEBCTTTCCBSSC----CEEE----EECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEE-ECSCSB
T ss_pred EEEEEcccccCCcccC----ceEE----EECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEE-ECCCCC
Confidence 9999986 3301100 0000 00011122346799999998777654 689999998 57666655 345667
Q ss_pred eEEEEec-CCC
Q 013578 400 ITCMAWA-PKT 409 (440)
Q Consensus 400 v~~v~~~-~~~ 409 (440)
+++++|. +++
T Consensus 273 ~~~~af~g~d~ 283 (326)
T 2ghs_A 273 TTCPAFIGPDA 283 (326)
T ss_dssp EEEEEEESTTS
T ss_pred cEEEEEecCCC
Confidence 9999998 775
No 213
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.39 E-value=5.4e-10 Score=96.05 Aligned_cols=238 Identities=10% Similarity=0.032 Sum_probs=147.3
Q ss_pred cCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeec
Q 013578 90 HGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYG 169 (440)
Q Consensus 90 H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~ 169 (440)
+...+.+++++++|+++++...++.|..||.. +... ... .......+..+++.+++.
T Consensus 60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~---~~~-~~~~~~~~~~i~~~~~g~------------------ 116 (300)
T 2qc5_A 60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT---EYP-LPQPDSGPYGITEGLNGD------------------ 116 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE---EEE-CSSTTCCEEEEEECSTTC------------------
T ss_pred CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE---Eec-CCCCCCCCccceECCCCC------------------
Confidence 44678999999999988877778889999876 3211 111 111223445555554443
Q ss_pred cccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee-eeeCC
Q 013578 170 EEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG-NVDTN 248 (440)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-~~~~~ 248 (440)
++++...++.|..||.. ++... .+...
T Consensus 117 ---------------------------------------------------l~v~~~~~~~i~~~~~~-g~~~~~~~~~~ 144 (300)
T 2qc5_A 117 ---------------------------------------------------IWFTQLNGDRIGKLTAD-GTIYEYDLPNK 144 (300)
T ss_dssp ---------------------------------------------------EEEEETTTTEEEEECTT-SCEEEEECSST
T ss_pred ---------------------------------------------------EEEEccCCCeEEEECCC-CCEEEccCCCC
Confidence 34444445567777766 54432 12223
Q ss_pred CCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEec
Q 013578 249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNI 328 (440)
Q Consensus 249 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~ 328 (440)
...+..++++++|+++++...++.|..||. .+. .. ......+...+.+++++++|.++++....+.|.+||.
T Consensus 145 ~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~---~~----~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 216 (300)
T 2qc5_A 145 GSYPAFITLGSDNALWFTENQNNSIGRITN-TGK---LE----EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT 216 (300)
T ss_dssp TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC---EE----EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred CCCceeEEECCCCCEEEEecCCCeEEEECC-CCc---EE----EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC
Confidence 445788999999996666655778888886 221 11 1122234456889999999987776666778999997
Q ss_pred CccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecC
Q 013578 329 NVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAP 407 (440)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~ 407 (440)
. +... .... ......+..++++++|++.++.. ++.|..|+. +++............+.++++.+
T Consensus 217 ~-g~~~--------~~~~-----~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~ 281 (300)
T 2qc5_A 217 T-GEIS--------EYDI-----PTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGK 281 (300)
T ss_dssp T-CCEE--------EEEC-----SSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECT
T ss_pred C-CcEE--------EEEC-----CCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCC
Confidence 3 2111 0000 01123366899999999777664 689999998 45433221122345688999999
Q ss_pred CCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 408 KTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 408 ~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
++ .++++.. . .|..++..
T Consensus 282 ~g--------~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 282 DG--------SVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp TS--------CEEEECS-S-EEEEEEEC
T ss_pred CC--------CEEEEcc-C-ceEEeCCC
Confidence 97 6555554 4 67666653
No 214
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.37 E-value=2.9e-11 Score=105.33 Aligned_cols=185 Identities=10% Similarity=-0.027 Sum_probs=126.7
Q ss_pred CeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc
Q 013578 219 STIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH 298 (440)
Q Consensus 219 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h 298 (440)
..++++...++.|.+||..+++.+..+.. ......++++++++.+++...++.|.+||..+.+ ....+...
T Consensus 54 ~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~--------~~~~i~~g 124 (328)
T 3dsm_A 54 GIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYE--------ITGYIECP 124 (328)
T ss_dssp TEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTE--------EEEEEECT
T ss_pred CEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCe--------EEEEEEcC
Confidence 33666667788999999999999888864 3457889999998544444378999999975443 22222222
Q ss_pred c-----cceEEEEEcCCCCEEEEEe-CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE
Q 013578 299 K-----SAVTWLCFAPNSEQIITAS-KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA 372 (440)
Q Consensus 299 ~-----~~v~~~~~~p~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 372 (440)
. .....+++ .++..+++.. .++.|.++|++++..... +.. . .....++++|+|+++++
T Consensus 125 ~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~-------i~~-----g---~~p~~i~~~~dG~l~v~ 188 (328)
T 3dsm_A 125 DMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDE-------LTI-----G---IQPTSLVMDKYNKMWTI 188 (328)
T ss_dssp TCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEE-------EEC-----S---SCBCCCEECTTSEEEEE
T ss_pred CccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEE-------EEc-----C---CCccceEEcCCCCEEEE
Confidence 1 14567777 3444444443 488999999987654321 110 0 11346899999998777
Q ss_pred ecC-----------CEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 373 THG-----------STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 373 ~~~-----------~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
+.+ +.|.++|..+++....+..........++|+|++ ..|..+.. .|.+||+.+++
T Consensus 189 ~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~--------~~lyv~~~--~v~~~d~~t~~ 255 (328)
T 3dsm_A 189 TDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTR--------DTLYWINN--DIWRMPVEADR 255 (328)
T ss_dssp BCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTS--------CEEEEESS--SEEEEETTCSS
T ss_pred ECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCC--------CEEEEEcc--EEEEEECCCCc
Confidence 642 6899999999987766532223478999999987 66666554 89999998765
No 215
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.32 E-value=1.9e-10 Score=102.18 Aligned_cols=252 Identities=12% Similarity=0.070 Sum_probs=150.4
Q ss_pred EEEEccCCCEEEEee----------CCCcEEEEecCCCCCcceeeEEec-CC---CCCCCceEEEccCCCeEEEEeecCC
Q 013578 96 GLCFSSDGKCLATAC----------ADGVIRVHKLDDASSKSFKFLRIN-LP---PGGPPTAVAFADNATSIVVATHNLS 161 (440)
Q Consensus 96 ~l~~s~dg~~l~t~s----------~dg~v~vW~~~~~~~~~~~~~~~~-~~---~~~~v~~v~~~~~~~~l~~~~~~~~ 161 (440)
.++++|||++|+.+. .++.|.++|..+.+.. ..+... .. .......++|+||+++++++....
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv--~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~- 198 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPI--ADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSP- 198 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE--EEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSS-
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEE--EEEECCCccccccCCCcceEEEcCCCCEEEEEecCC-
Confidence 899999999888876 4678999999876532 112211 00 124567899999999999886431
Q ss_pred cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCce
Q 013578 162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKL 241 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 241 (440)
...+.+.+............ ..+....|++...+++.+.||.+.+.+..+++.
T Consensus 199 ~~~VsVID~~t~kvv~~I~v---------------------------~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v 251 (426)
T 3c75_H 199 APAVGVVDLEGKTFDRMLDV---------------------------PDCYHIFPASPTVFYMNCRDGSLARVDFADGET 251 (426)
T ss_dssp SCEEEEEETTTTEEEEEEEC---------------------------CSEEEEEEEETTEEEEEETTSSEEEEECCTTCC
T ss_pred CCeEEEEECCCCeEEEEEEc---------------------------CCceeeccCCCcEEEEEcCCCCEEEEECCCCcE
Confidence 23455555544321110000 000111233433666677788888888765654
Q ss_pred eee----eeCCCCcc-cEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeee----eeeccccceEEEEEcCCCC
Q 013578 242 LGN----VDTNQLKN-NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM----QLKGHKSAVTWLCFAPNSE 312 (440)
Q Consensus 242 ~~~----~~~~~~~v-~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----~~~~h~~~v~~~~~~p~~~ 312 (440)
... +.....++ ..+.+.+++..++..+..+.+.+.|+..........+.... ...........++++|++.
T Consensus 252 ~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~ 331 (426)
T 3c75_H 252 KVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSD 331 (426)
T ss_dssp EEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGT
T ss_pred EEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCC
Confidence 422 22222221 23567899888888888899999997533200000000000 0000111222368999988
Q ss_pred EEEEEeC----------CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEec--CCEEE
Q 013578 313 QIITASK----------DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATH--GSTLQ 379 (440)
Q Consensus 313 ~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~--~~~i~ 379 (440)
+++.... ++.|.+.|+.+.+.+.. ++.. .....++|+|||+ ++++.. ++.|.
T Consensus 332 rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~-------I~vg--------~~P~gia~spDg~~~lyv~n~~s~~Vs 396 (426)
T 3c75_H 332 RIYLLVDQRDEWKHKAASRFVVVLNAETGERINK-------IELG--------HEIDSINVSQDAEPLLYALSAGTQTLH 396 (426)
T ss_dssp EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE-------EEEE--------EEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred EEEEEecccccccccCCCCEEEEEECCCCeEEEE-------EECC--------CCcCeEEEccCCCEEEEEEcCCCCeEE
Confidence 7766542 35799999987654321 1111 1256799999999 777755 79999
Q ss_pred EEEcCCccchhhh
Q 013578 380 WLSVETGKVLDTA 392 (440)
Q Consensus 380 i~d~~~~~~~~~~ 392 (440)
++|+.+++.+.++
T Consensus 397 VID~~t~kvv~tI 409 (426)
T 3c75_H 397 IYDAATGEELRSV 409 (426)
T ss_dssp EEETTTCCEEEEE
T ss_pred EEECCCCCEEEEe
Confidence 9999999998776
No 216
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.30 E-value=1.8e-10 Score=100.58 Aligned_cols=267 Identities=9% Similarity=-0.017 Sum_probs=153.4
Q ss_pred cccccccCcceeEEEEccCCCEEEEee----------CCCcEEEEecCCCCCcceeeEEecCC----CCCCCceEEEccC
Q 013578 84 VNTLKGHGDSVTGLCFSSDGKCLATAC----------ADGVIRVHKLDDASSKSFKFLRINLP----PGGPPTAVAFADN 149 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s----------~dg~v~vW~~~~~~~~~~~~~~~~~~----~~~~v~~v~~~~~ 149 (440)
+.++..-..+ .+.++|||++++.+. .+++|.+||+.+.+.. ..+..... .......++++||
T Consensus 59 ~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv--~~I~v~~~~~~~~g~~P~~ia~SpD 134 (368)
T 1mda_H 59 LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI--ADIELPDAPRFSVGPRVHIIGNCAS 134 (368)
T ss_dssp EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE--EEEEETTSCSCCBSCCTTSEEECTT
T ss_pred EEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE--EEEECCCccccccCCCcceEEEcCC
Confidence 3344333345 799999999998886 4789999999987632 11211100 1245789999999
Q ss_pred CCeEEEEeecCCcceEEe--eccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeC
Q 013578 150 ATSIVVATHNLSGCSLYM--YGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSE 227 (440)
Q Consensus 150 ~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 227 (440)
|++++++.... ...+.+ ++... ... +. . ..+....++++..+++.+.
T Consensus 135 Gk~lyVan~~~-~~~v~V~~iD~~t-v~~--------------------------i~-v--~~~~~~~p~g~~~~~~~~~ 183 (368)
T 1mda_H 135 SACLLFFLFGS-SAAAGLSVPGASD-DQL--------------------------TK-S--ASCFHIHPGAAATHYLGSC 183 (368)
T ss_dssp SSCEEEEECSS-SCEEEEEETTTEE-EEE--------------------------EE-C--SSCCCCEEEETTEEECCCC
T ss_pred CCEEEEEccCC-CCeEEEEEEchhh-ceE--------------------------EE-C--CCceEEccCCCeEEEEEcC
Confidence 99999886431 123333 55433 100 00 0 0001123455446667777
Q ss_pred CceEEEEeCCC-----Cceee----eeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee---e
Q 013578 228 GTDISIWHGKT-----GKLLG----NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ---L 295 (440)
Q Consensus 228 d~~i~vwd~~~-----~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~ 295 (440)
|+.+.+.|+.+ ++... .+.....+. . .+++..++..+. +.+.+.|+..........+..... .
T Consensus 184 dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~ 258 (368)
T 1mda_H 184 PASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKA 258 (368)
T ss_dssp TTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHH
T ss_pred CCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccc
Confidence 88888888876 33321 122222222 3 666666666666 999999975322100000000000 0
Q ss_pred ec-cccceEEEEEcCCCCEEEEEeC---------CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC
Q 013578 296 KG-HKSAVTWLCFAPNSEQIITASK---------DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS 365 (440)
Q Consensus 296 ~~-h~~~v~~~~~~p~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 365 (440)
.+ .......++++|++++++.+.. ++.+.++|+.+.+.+.. ++. ......++|+|
T Consensus 259 ~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~-------i~v--------g~~p~gi~~s~ 323 (368)
T 1mda_H 259 DNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP-------ISN--------GHDSDAIIAAQ 323 (368)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC-------CEE--------EEEECEEEECC
T ss_pred cccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEE-------EEC--------CCCcceEEECC
Confidence 00 0111222689999988876533 23566999997754422 111 11356799999
Q ss_pred CCCE-EEE-e-cCCEEEEEEcCCccchhhhhccccCCeEEEEecC
Q 013578 366 DGKI-LAA-T-HGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAP 407 (440)
Q Consensus 366 ~g~~-l~~-~-~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~ 407 (440)
||+. +++ . .++.|.++|+.+++.+..+. -......+++.+
T Consensus 324 Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~--vg~~P~~i~~~~ 366 (368)
T 1mda_H 324 DGASDNYANSAGTEVLDIYDAASDQDQSSVE--LDKGPESLSVQN 366 (368)
T ss_dssp SSSCEEEEEETTTTEEEEEESSSCEEEEECC--CCSCCCEEECCC
T ss_pred CCCEEEEEccCCCCeEEEEECCCCcEEEEEE--CCCCCCEEEeec
Confidence 9983 444 4 37999999999999998885 234456666654
No 217
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.24 E-value=3.2e-09 Score=91.86 Aligned_cols=220 Identities=10% Similarity=0.028 Sum_probs=128.2
Q ss_pred cCcceeEEEEccC-CCEEEEeeCCCcEEEEecCCCCCcceee-EEec-CCCCCCCceEEEccCCCeEEEEeecCCcceEE
Q 013578 90 HGDSVTGLCFSSD-GKCLATACADGVIRVHKLDDASSKSFKF-LRIN-LPPGGPPTAVAFADNATSIVVATHNLSGCSLY 166 (440)
Q Consensus 90 H~~~V~~l~~s~d-g~~l~t~s~dg~v~vW~~~~~~~~~~~~-~~~~-~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~ 166 (440)
+...+.+++++++ |+++++.. ++.|.+|+.+ +... .. .... ......+.++++.++++..++...+.....
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~--~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~-- 142 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFE--EIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPA-- 142 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEE--ECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTS--
T ss_pred CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEE--EEEeccCCCccccCCcCEEECCCCCEEEEecCcccccc--
Confidence 5678999999999 76555554 4468889887 4321 01 0000 011245788999988875554432200000
Q ss_pred eeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeee
Q 013578 167 MYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD 246 (440)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 246 (440)
.+. .. .....+.|..|+.. ++......
T Consensus 143 ------------------------~~~----------------------~~------~~~~~~~l~~~~~~-g~~~~~~~ 169 (314)
T 1pjx_A 143 ------------------------DYT----------------------RS------MQEKFGSIYCFTTD-GQMIQVDT 169 (314)
T ss_dssp ------------------------CCC----------------------BT------TSSSCEEEEEECTT-SCEEEEEE
T ss_pred ------------------------ccc----------------------cc------ccCCCCeEEEECCC-CCEEEecc
Confidence 000 00 00112346666654 44332222
Q ss_pred CCCCcccEEEec----CCCCeEEEE-ecCCCEEEEEeEecCCCceeeeeeeeeeeccc-cceEEEEEcCCCCEEEEEeCC
Q 013578 247 TNQLKNNMAAIS----PNGRFLAAA-AFTADVKVWEIVYSKDGLVKAVTSVMQLKGHK-SAVTWLCFAPNSEQIITASKD 320 (440)
Q Consensus 247 ~~~~~v~~~~~s----~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~p~~~~l~s~~~d 320 (440)
+......++++ ++++.|+++ ..++.|.+||+... +..........+.++. ..+..++++++|+++++...+
T Consensus 170 -~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~--g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~ 246 (314)
T 1pjx_A 170 -AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP--AKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS 246 (314)
T ss_dssp -EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET--TEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred -CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCC--CccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCC
Confidence 22345778999 999766665 45788999998621 1111112233344444 567899999999988887788
Q ss_pred CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcCC
Q 013578 321 GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSVET 385 (440)
Q Consensus 321 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~~ 385 (440)
+.|.+||.+++... ..+. .+...+.+++++++|+.|.++. ++.|..|++..
T Consensus 247 ~~i~~~d~~~g~~~-------~~~~-------~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 247 SHIEVFGPDGGQPK-------MRIR-------CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TEEEEECTTCBSCS-------EEEE-------CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CEEEEEcCCCCcEe-------EEEe-------CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 89999998744321 1111 1113467899999999555443 56999999865
No 218
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.18 E-value=2.9e-09 Score=95.43 Aligned_cols=200 Identities=9% Similarity=-0.000 Sum_probs=124.6
Q ss_pred ccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCC--CEEEEEeEecCCCceee
Q 013578 211 ATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTA--DVKVWEIVYSKDGLVKA 288 (440)
Q Consensus 211 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~ 288 (440)
.+.+.++++ ++++...++.|++||..+++........ .... ++|+++++.|+++..++ .|.+|+..... .
T Consensus 135 ~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~--~--- 206 (409)
T 3hrp_A 135 GIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW--A--- 206 (409)
T ss_dssp EEEECSTTE-EEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT--C---
T ss_pred EEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc--e---
Confidence 344467776 7777777889999999877665554442 2334 89999999999998876 56666653322 0
Q ss_pred eeeeeeeec-cccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC-
Q 013578 289 VTSVMQLKG-HKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD- 366 (440)
Q Consensus 289 ~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~- 366 (440)
...+..+.. ....+.+++++|++..|+.+..++.|+.||..++.... ..... ........+...++|+|+
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~-----~~~~~---~~g~~~~~P~~~ia~~p~~ 278 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTL-----IKQLE---LSGSLGTNPGPYLIYYFVD 278 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEE-----EEECC---CCSCCCCSSCCEEEEETTT
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEE-----Eeccc---ccCCCCCCccccEEEeCCC
Confidence 001111112 34567899999955555557778899999987543210 00000 000000001127999996
Q ss_pred CCEEEEec-CCEEEEEEcCCccchhhhhccc---------------cCCeEEEEecCCCCCCCCCcceEEEEee-CCCeE
Q 013578 367 GKILAATH-GSTLQWLSVETGKVLDTAEKAH---------------EGEITCMAWAPKTIPMGNQQVSVLATSS-VDKKV 429 (440)
Q Consensus 367 g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h---------------~~~v~~v~~~~~~~~~~~~~~~~l~t~~-~Dg~i 429 (440)
+.++++.. ++.|+.|+.... +..+ .++ -.....+++++++ .++++-. .++.|
T Consensus 279 g~lyv~d~~~~~I~~~~~~g~--~~~~-~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG--------~lyvad~~~~~~I 347 (409)
T 3hrp_A 279 SNFYMSDQNLSSVYKITPDGE--CEWF-CGSATQKTVQDGLREEALFAQPNGMTVDEDG--------NFYIVDGFKGYCL 347 (409)
T ss_dssp TEEEEEETTTTEEEEECTTCC--EEEE-EECTTCCSCBCEEGGGCBCSSEEEEEECTTC--------CEEEEETTTTCEE
T ss_pred CEEEEEeCCCCEEEEEecCCC--EEEE-EeCCCCCCcCCCcccccEeCCCeEEEEeCCC--------CEEEEeCCCCCEE
Confidence 55444433 689999987543 1111 122 2358899999998 7777777 78999
Q ss_pred EEEeCCCC
Q 013578 430 KLWLAPSL 437 (440)
Q Consensus 430 ~vw~~~~~ 437 (440)
+.|++.++
T Consensus 348 ~~~~~~~G 355 (409)
T 3hrp_A 348 RKLDILDG 355 (409)
T ss_dssp EEEETTTT
T ss_pred EEEECCCC
Confidence 99997654
No 219
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.17 E-value=4.7e-09 Score=90.03 Aligned_cols=192 Identities=10% Similarity=0.051 Sum_probs=122.9
Q ss_pred cCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeee
Q 013578 214 GTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM 293 (440)
Q Consensus 214 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 293 (440)
+.+++..++++...++.|+.||..+++. ..+.. ...+.+++++++|++++ +. ++.|.+||...+. . ..+.
T Consensus 20 w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~-~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g~---~---~~~~ 89 (297)
T 3g4e_A 20 WEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTM-DAPVSSVALRQSGGYVA-TI-GTKFCALNWKEQS---A---VVLA 89 (297)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTCCE-EEEEC-SSCEEEEEEBTTSSEEE-EE-TTEEEEEETTTTE---E---EEEE
T ss_pred EECCCCEEEEEECCCCEEEEEECCCCcE-EEEeC-CCceEEEEECCCCCEEE-EE-CCeEEEEECCCCc---E---EEEE
Confidence 3565565788888889999999987765 33332 45688999999999554 44 5678888864332 1 1111
Q ss_pred eeec--cccceEEEEEcCCCCEEEEEeCC---------CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEE
Q 013578 294 QLKG--HKSAVTWLCFAPNSEQIITASKD---------GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS 362 (440)
Q Consensus 294 ~~~~--h~~~v~~~~~~p~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 362 (440)
.... ....+..++++|+|+++++...+ ..-.+|.+...... .... ........++
T Consensus 90 ~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-------~~~~-------~~~~~pngi~ 155 (297)
T 3g4e_A 90 TVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-------KKYF-------DQVDISNGLD 155 (297)
T ss_dssp ECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-------EEEE-------EEESBEEEEE
T ss_pred ecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE-------EEEe-------eccccccceE
Confidence 1111 12457899999999976655332 23456655421110 0000 0111245799
Q ss_pred eCCCCCEEEEec--CCEEEEEEc--CCccch-----hhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578 363 LSSDGKILAATH--GSTLQWLSV--ETGKVL-----DTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWL 433 (440)
Q Consensus 363 ~s~~g~~l~~~~--~~~i~i~d~--~~~~~~-----~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~ 433 (440)
|+|+++.|..++ ++.|.+|++ .++... ..+ ..+.+.+..+++++++ ++.++...++.|.+|+
T Consensus 156 ~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~-~~~~~~p~g~~~d~~G--------~lwva~~~~~~v~~~d 226 (297)
T 3g4e_A 156 WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKL-EKEEQIPDGMCIDAEG--------KLWVACYNGGRVIRLD 226 (297)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEEC-CGGGCEEEEEEEBTTS--------CEEEEEETTTEEEEEC
T ss_pred EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEEC-CCCCCCCCeeEECCCC--------CEEEEEcCCCEEEEEc
Confidence 999999776543 689999987 455431 122 1244578899999998 7888877788999999
Q ss_pred CCCCC
Q 013578 434 APSLE 438 (440)
Q Consensus 434 ~~~~~ 438 (440)
..+++
T Consensus 227 ~~tG~ 231 (297)
T 3g4e_A 227 PVTGK 231 (297)
T ss_dssp TTTCC
T ss_pred CCCce
Confidence 98664
No 220
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.17 E-value=1.2e-11 Score=109.40 Aligned_cols=181 Identities=10% Similarity=-0.036 Sum_probs=100.2
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~ 300 (440)
.+++++.|+.|+.||..+|+.+..+.. ..+.+..+..++..+++++.||.|+.||..+++ .+..+..+..
T Consensus 11 ~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~--------~~w~~~~~~~ 80 (369)
T 2hz6_A 11 LLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNE--------GLTKLPFTIP 80 (369)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----C--------CSEECSCCHH
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCc--------eeeeeeccCc
Confidence 788899999999999999999888776 445555556678888888899999999987665 2222221111
Q ss_pred -ceE-EEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCE
Q 013578 301 -AVT-WLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGST 377 (440)
Q Consensus 301 -~v~-~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~ 377 (440)
.+. +..+. .+..|++++.|+.|+.||.++++.+...... . ...++|++..++++ .++.
T Consensus 81 ~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~--------------~----~~~~~p~~~~v~~~~~dg~ 141 (369)
T 2hz6_A 81 ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSA--------------F----ADSLSPSTSLLYLGRTEYT 141 (369)
T ss_dssp HHHTTCSCC------CCCCEEEEEEEEECCC----------------------------------------EEEEEEEEE
T ss_pred cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCC--------------C----cccccccCCEEEEEecCCE
Confidence 110 00111 3456778888999999999987654321110 0 12345566666655 4899
Q ss_pred EEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 378 LQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 378 i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
|+.||..+|+.+..+. .+. .....+.++. .....++.++.||.|+.||..+++
T Consensus 142 v~a~d~~tG~~~W~~~-~~~--~~~~~~~~~~-----~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 142 ITMYDTKTRELRWNAT-YFD--YAASLPEDDV-----DYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp EECCCSSSSSCCCEEE-EEE--ECCBCCCCCT-----TCCCCEEEEETSCEEEEECTTTCC
T ss_pred EEEEECCCCCEEEeEe-ccc--ccCccccCCc-----cccceEEEECCCCEEEEEECCCCc
Confidence 9999999999877653 111 2223333321 000356778889999999998876
No 221
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.16 E-value=9.9e-09 Score=90.11 Aligned_cols=176 Identities=11% Similarity=0.097 Sum_probs=109.8
Q ss_pred CceEEEEeCCCCceeeeeeCCCCc---ccEEEecCCCCeEEEEe-------------------cCCCEEEEEeEecCCCc
Q 013578 228 GTDISIWHGKTGKLLGNVDTNQLK---NNMAAISPNGRFLAAAA-------------------FTADVKVWEIVYSKDGL 285 (440)
Q Consensus 228 d~~i~vwd~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~ 285 (440)
.+.|.++|.++++.+..+.....+ ...+.|+|+++.+++.. ...+|.+||+...+
T Consensus 163 ~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k--- 239 (462)
T 2ece_A 163 PGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK--- 239 (462)
T ss_dssp CCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE---
T ss_pred CCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc---
Confidence 367999999999999888643222 33578899999888884 36889999986532
Q ss_pred eeeeeeeeeeec--cccceEEEEE--cCCCCEEEEEe------CCCcEEEEecCccccccCCCCccccccccccCC----
Q 013578 286 VKAVTSVMQLKG--HKSAVTWLCF--APNSEQIITAS------KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDS---- 351 (440)
Q Consensus 286 ~~~~~~~~~~~~--h~~~v~~~~~--~p~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---- 351 (440)
.+.++.. .......+.| +|++++++.++ .+++|.+|..+.+... ....+.++....
T Consensus 240 -----~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~-----~~~vIdi~~~~v~~~l 309 (462)
T 2ece_A 240 -----RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWN-----AEKVIEIPAEPLEGNL 309 (462)
T ss_dssp -----EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEE-----EEEEEEECCEECCSSC
T ss_pred -----EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCcee-----EEEEEeCCCccccccc
Confidence 2333332 1123445555 99999887776 4568887766532110 001110000000
Q ss_pred -------CCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcCCc---cchhhhhcc-------c------cCCeEEEEec
Q 013578 352 -------NGATLQYDRLSLSSDGKILAATH--GSTLQWLSVETG---KVLDTAEKA-------H------EGEITCMAWA 406 (440)
Q Consensus 352 -------~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~~~---~~~~~~~~~-------h------~~~v~~v~~~ 406 (440)
.+.......+.+|+||++|.++. .+.|.+||+... +.+..+..+ | .+.-..++++
T Consensus 310 p~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lS 389 (462)
T 2ece_A 310 PEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEIS 389 (462)
T ss_dssp CGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEEC
T ss_pred cccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEc
Confidence 00012356799999999998875 689999998633 344443222 1 0135889999
Q ss_pred CCCCCCCCCcceEEEEee
Q 013578 407 PKTIPMGNQQVSVLATSS 424 (440)
Q Consensus 407 ~~~~~~~~~~~~~l~t~~ 424 (440)
||+ ++|+.+.
T Consensus 390 pDG--------k~LyVaN 399 (462)
T 2ece_A 390 RDG--------RRVYVTN 399 (462)
T ss_dssp TTS--------SEEEEEC
T ss_pred CCC--------CEEEEEc
Confidence 998 6777766
No 222
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.16 E-value=3e-11 Score=106.92 Aligned_cols=158 Identities=10% Similarity=0.059 Sum_probs=82.8
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCc-cc-EEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecc
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLK-NN-MAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGH 298 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-v~-~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h 298 (440)
.+++++.|+.|+.||..+++.+..+..+... +. ...+. .+..+++++.++.|+.||..+++ .+..+..+
T Consensus 51 ~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~--------~~w~~~~~ 121 (369)
T 2hz6_A 51 AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGE--------KQQTLSSA 121 (369)
T ss_dssp CEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-------------------
T ss_pred EEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCc--------EEEEecCC
Confidence 5666788999999999998876665433111 11 11111 35567888889999999998776 33333333
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC----CCEEEEec
Q 013578 299 KSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD----GKILAATH 374 (440)
Q Consensus 299 ~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----g~~l~~~~ 374 (440)
. ...++|++..+++++.|+.|+.||.++++.+.... .. .....+++.+ +.+++++.
T Consensus 122 ~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-------~~---------~~~~~~~~~~~~~~~~v~~~~~ 181 (369)
T 2hz6_A 122 F----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT-------YF---------DYAASLPEDDVDYKMSHFVSNG 181 (369)
T ss_dssp ---------------EEEEEEEEEEECCCSSSSSCCCEEE-------EE---------EECCBCCCCCTTCCCCEEEEET
T ss_pred C----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe-------cc---------cccCccccCCccccceEEEECC
Confidence 2 23456788889999999999999998775432110 00 0122333333 56666667
Q ss_pred CCEEEEEEcCCccchhhhhccccCCeEE-EEecCCC
Q 013578 375 GSTLQWLSVETGKVLDTAEKAHEGEITC-MAWAPKT 409 (440)
Q Consensus 375 ~~~i~i~d~~~~~~~~~~~~~h~~~v~~-v~~~~~~ 409 (440)
++.++.||..+|+.+.... ...++.. ..+++++
T Consensus 182 dg~v~a~d~~tG~~~W~~~--~~~pv~~~~~~~~dg 215 (369)
T 2hz6_A 182 DGLVVTVDSESGDVLWIQN--YASPVVAFYVWQREG 215 (369)
T ss_dssp SCEEEEECTTTCCEEEEEE--CSSCEEEEEECTTSS
T ss_pred CCEEEEEECCCCcEEEEec--CCCceEEEEEecCCc
Confidence 9999999999999877653 3444433 3455554
No 223
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.15 E-value=1.6e-09 Score=94.69 Aligned_cols=199 Identities=12% Similarity=0.001 Sum_probs=131.7
Q ss_pred EEEEeeCCc----eEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEe----------cCCCEEEEEeEecCCCce
Q 013578 221 IIASCSEGT----DISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAA----------FTADVKVWEIVYSKDGLV 286 (440)
Q Consensus 221 ~l~s~~~d~----~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~ 286 (440)
.+++...++ +|.++|..+++.+.++.....+ .+.++||+++++++. .++.|.+||+.+.+
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~---- 107 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL---- 107 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC----
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC----
Confidence 555555455 7899999999999999876665 799999999999987 36789999987665
Q ss_pred eeeeeeeeeecc-------ccceEEEEEcCCCCEEEEEeC--CCcEEE--EecCccccccC-------------------
Q 013578 287 KAVTSVMQLKGH-------KSAVTWLCFAPNSEQIITASK--DGTLRV--WNINVRYHLDE------------------- 336 (440)
Q Consensus 287 ~~~~~~~~~~~h-------~~~v~~~~~~p~~~~l~s~~~--dg~i~i--wd~~~~~~~~~------------------- 336 (440)
.+..+... ......++++|||++++.+.. +..|.+ +|+.+...+..
T Consensus 108 ----vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~ 183 (368)
T 1mda_H 108 ----PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSC 183 (368)
T ss_dssp ----EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCC
T ss_pred ----EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcC
Confidence 34444322 123568999999999988864 456888 88854111100
Q ss_pred C-------CCc-----ccc-------ccc---c------------------ccCCCCC---------------------e
Q 013578 337 D-------PKT-----LKV-------LPI---P------------------LLDSNGA---------------------T 355 (440)
Q Consensus 337 ~-------~~~-----~~~-------~~~---~------------------~~~~~~~---------------------~ 355 (440)
. ... .+. +.. + ....... .
T Consensus 184 dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p 263 (368)
T 1mda_H 184 PASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRS 263 (368)
T ss_dssp TTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE
T ss_pred CCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEecccccccccccc
Confidence 0 000 000 000 0 0000000 0
Q ss_pred eeeeeEEeCCCCCEEEEe-c-C--------CEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEee-
Q 013578 356 LQYDRLSLSSDGKILAAT-H-G--------STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSS- 424 (440)
Q Consensus 356 ~~v~~~~~s~~g~~l~~~-~-~--------~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~- 424 (440)
.....++++||++.+.++ . . +.+.++|+.+++.+..+..+. ....++|+||+. .++++..
T Consensus 264 ~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~-------~l~va~~~ 334 (368)
T 1mda_H 264 AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGA-------SDNYANSA 334 (368)
T ss_dssp CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSS-------CEEEEEET
T ss_pred CcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCC-------EEEEEccC
Confidence 001127799998877653 2 2 367799999999998885333 689999999971 3667777
Q ss_pred CCCeEEEEeCCCCC
Q 013578 425 VDKKVKLWLAPSLE 438 (440)
Q Consensus 425 ~Dg~i~vw~~~~~~ 438 (440)
.++.|.++|+.+++
T Consensus 335 ~~~~VsVID~~t~k 348 (368)
T 1mda_H 335 GTEVLDIYDAASDQ 348 (368)
T ss_dssp TTTEEEEEESSSCE
T ss_pred CCCeEEEEECCCCc
Confidence 59999999998875
No 224
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.11 E-value=2e-08 Score=96.02 Aligned_cols=193 Identities=11% Similarity=0.027 Sum_probs=124.4
Q ss_pred CceEEEEeCCCCceeeeeeCCCCc--------------------------------ccEEEecCCCCeEEEEecCC----
Q 013578 228 GTDISIWHGKTGKLLGNVDTNQLK--------------------------------NNMAAISPNGRFLAAAAFTA---- 271 (440)
Q Consensus 228 d~~i~vwd~~~~~~~~~~~~~~~~--------------------------------v~~~~~s~~~~~l~~~~~dg---- 271 (440)
++.|+.||..+|+.+..+...... ...+++++++..+++++.++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~ 268 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS 268 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence 689999999999988776542211 13578889999999887664
Q ss_pred ---------------CEEEEEeEecCCCceeeeeeeeeee--ccc-------cceEEEEEcCCC---CEEEEEeCCCcEE
Q 013578 272 ---------------DVKVWEIVYSKDGLVKAVTSVMQLK--GHK-------SAVTWLCFAPNS---EQIITASKDGTLR 324 (440)
Q Consensus 272 ---------------~i~i~d~~~~~~~~~~~~~~~~~~~--~h~-------~~v~~~~~~p~~---~~l~s~~~dg~i~ 324 (440)
.|..+|..+++ .+..++ .|. ....-+....+| ..++.++.+|.|+
T Consensus 269 ~~~~~~~~gd~~~~~sv~AlD~~TG~--------~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~ 340 (677)
T 1kb0_A 269 HKVRSPKGGDNLYLASIVALDPDTGK--------YKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFF 340 (677)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCC--------EEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEE
T ss_pred CCCCCccCCCCeeeEEEEEEECCCCC--------EEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEE
Confidence 37778876654 222222 121 122233444477 6789999999999
Q ss_pred EEecCccccccCCCCcccc----cc---cc--------------cc-CCCCCeeeeeeEEeCCCCCEEEEec--------
Q 013578 325 VWNINVRYHLDEDPKTLKV----LP---IP--------------LL-DSNGATLQYDRLSLSSDGKILAATH-------- 374 (440)
Q Consensus 325 iwd~~~~~~~~~~~~~~~~----~~---~~--------------~~-~~~~~~~~v~~~~~s~~g~~l~~~~-------- 374 (440)
++|.++++.+......... +. .+ .. ...+. .....++++|++.++.+..
T Consensus 341 ~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~-~~w~~~a~dp~~~~~yv~~~~~~~~~~ 419 (677)
T 1kb0_A 341 VLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA-HNWHPMSFNPQTGLVYLPAQNVPVNLM 419 (677)
T ss_dssp EEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS-SCSSCCEEETTTTEEEEEEEECCCEEE
T ss_pred EEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccc-cCCCCceEcCCCCEEEEeChhcceeee
Confidence 9999988765321110000 00 00 00 00000 1123688999888776531
Q ss_pred ------------------------------------CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcce
Q 013578 375 ------------------------------------GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVS 418 (440)
Q Consensus 375 ------------------------------------~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~ 418 (440)
.+.|..||+.+++.+..+. +..++....+..++ .
T Consensus 420 ~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~~~g--------~ 489 (677)
T 1kb0_A 420 DDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE--HVSPWNGGTLTTAG--------N 489 (677)
T ss_dssp ECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETT--------T
T ss_pred cccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC--CCCCCcCcceEeCC--------C
Confidence 1689999999999888764 44555555566655 5
Q ss_pred EEEEeeCCCeEEEEeCCCCCC
Q 013578 419 VLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 419 ~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
+++.++.||.+++||+.+++.
T Consensus 490 ~v~~g~~dg~l~a~D~~tG~~ 510 (677)
T 1kb0_A 490 VVFQGTADGRLVAYHAATGEK 510 (677)
T ss_dssp EEEEECTTSEEEEEETTTCCE
T ss_pred EEEEECCCCcEEEEECCCCce
Confidence 888899999999999998873
No 225
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.09 E-value=2.5e-08 Score=85.84 Aligned_cols=219 Identities=11% Similarity=0.067 Sum_probs=122.8
Q ss_pred ccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecC-CCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578 85 NTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINL-PPGGPPTAVAFADNATSIVVATHNLSGC 163 (440)
Q Consensus 85 ~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~~~~~~~~~~ 163 (440)
..+..+...+.+++++++|+++++...++.|.+|+.+ +... ....... .....+..+++.++|+..++-...+
T Consensus 79 ~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~--~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g--- 152 (305)
T 3dr2_A 79 DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAH--LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFG--- 152 (305)
T ss_dssp EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE--EEECEETTEECSCCCCEEECTTSCEEEECCSGG---
T ss_pred EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEE--EEEeccCCCccCCCCCEEECCCCCEEEeCcCCC---
Confidence 3445566778999999999977766666789999875 3211 1111111 1124567888888887554311000
Q ss_pred eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee
Q 013578 164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG 243 (440)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 243 (440)
.... + .+. ........+.|..||..+++...
T Consensus 153 ------~~~~------------------~------------------------~~~-~~~~~~~~~~v~~~d~~~g~~~~ 183 (305)
T 3dr2_A 153 ------LRKP------------------S------------------------QGC-PADPELAHHSVYRLPPDGSPLQR 183 (305)
T ss_dssp ------GSCG------------------G------------------------GSC-CCCCSSSCEEEEEECSSSCCCEE
T ss_pred ------cccc------------------c------------------------ccc-ccccccCCCeEEEEcCCCCcEEE
Confidence 0000 0 000 00000112347777776665433
Q ss_pred eeeCCCCcccEEEecCCCCeEEEEecC------CCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEE
Q 013578 244 NVDTNQLKNNMAAISPNGRFLAAAAFT------ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITA 317 (440)
Q Consensus 244 ~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~ 317 (440)
.. .......++|+|+++.|+++... +.|.+|++.... ......... ...+....++++++|++. ++
T Consensus 184 ~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~---l~~~~~~~~--~~~~~pdgi~~d~~G~lw-v~ 255 (305)
T 3dr2_A 184 MA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA---LHDRRHFAS--VPDGLPDGFCVDRGGWLW-SS 255 (305)
T ss_dssp EE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE---EEEEEEEEC--CSSSCCCSEEECTTSCEE-EC
T ss_pred Ee--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC---ccCCeEEEE--CCCCCCCeEEECCCCCEE-Ee
Confidence 32 23345779999999988888765 679999886322 111111111 123445678999999944 44
Q ss_pred eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEc
Q 013578 318 SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSV 383 (440)
Q Consensus 318 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~ 383 (440)
+.+ .|.+|+.... .+ ..+..+ . .+..++|+++++.|..+..+.++.+++
T Consensus 256 ~~~-gv~~~~~~g~-~~-------~~~~~~-------~-~~~~~~f~~d~~~L~it~~~~l~~~~~ 304 (305)
T 3dr2_A 256 SGT-GVCVFDSDGQ-LL-------GHIPTP-------G-TASNCTFDQAQQRLFITGGPCLWMLPL 304 (305)
T ss_dssp CSS-EEEEECTTSC-EE-------EEEECS-------S-CCCEEEECTTSCEEEEEETTEEEEEEC
T ss_pred cCC-cEEEECCCCC-EE-------EEEECC-------C-ceeEEEEeCCCCEEEEEcCCeEEEEEC
Confidence 444 4999987532 11 111111 1 266799999998777776666665543
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.09 E-value=3.6e-08 Score=94.39 Aligned_cols=194 Identities=11% Similarity=0.020 Sum_probs=122.0
Q ss_pred CceEEEEeCCCCceeeeeeCCC-------------------------------CcccEEEecCCCCeEEEEecCCC----
Q 013578 228 GTDISIWHGKTGKLLGNVDTNQ-------------------------------LKNNMAAISPNGRFLAAAAFTAD---- 272 (440)
Q Consensus 228 d~~i~vwd~~~~~~~~~~~~~~-------------------------------~~v~~~~~s~~~~~l~~~~~dg~---- 272 (440)
++.|+.||..+|+.+..+.... .....++++|++..+++++.++.
T Consensus 182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~ 261 (689)
T 1yiq_A 182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP 261 (689)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence 6899999999999887664210 01125788898899999987763
Q ss_pred ---------------EEEEEeEecCCCceeeeeeeeeeec--cc-------cceEEEEEcCCCC---EEEEEeCCCcEEE
Q 013578 273 ---------------VKVWEIVYSKDGLVKAVTSVMQLKG--HK-------SAVTWLCFAPNSE---QIITASKDGTLRV 325 (440)
Q Consensus 273 ---------------i~i~d~~~~~~~~~~~~~~~~~~~~--h~-------~~v~~~~~~p~~~---~l~s~~~dg~i~i 325 (440)
|..+|..+++ .+-.++. |. .++.......+|+ .++.++.+|.+++
T Consensus 262 ~~~~~~~gd~~y~~~v~AlD~~TG~--------~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~ 333 (689)
T 1yiq_A 262 KWRSQAKGDNLFLSSIVAVNADTGE--------YVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYV 333 (689)
T ss_dssp HHHHTTCSCCTTTTEEEEEETTTCC--------EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEE
T ss_pred CCCCCCCCCceeeeeEEEEEccCCc--------eeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEE
Confidence 8888887665 2222221 21 1222223233565 7889999999999
Q ss_pred EecCccccccCCCCcc------------cccccc--c--c---------CCCCCeeeeeeEEeCCCCCEEEEec------
Q 013578 326 WNINVRYHLDEDPKTL------------KVLPIP--L--L---------DSNGATLQYDRLSLSSDGKILAATH------ 374 (440)
Q Consensus 326 wd~~~~~~~~~~~~~~------------~~~~~~--~--~---------~~~~~~~~v~~~~~s~~g~~l~~~~------ 374 (440)
+|.++++.+....... ..+..+ . . ...........++++|+..++.+..
T Consensus 334 lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~ 413 (689)
T 1yiq_A 334 IDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAY 413 (689)
T ss_dssp EETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEE
T ss_pred EECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEecccccee
Confidence 9999887752111000 000000 0 0 0000001123478888877666531
Q ss_pred ----------------------------------------CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCC
Q 013578 375 ----------------------------------------GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGN 414 (440)
Q Consensus 375 ----------------------------------------~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~ 414 (440)
++.|+.||+.+|+.+..+. +..++..-.+...+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~tag----- 486 (689)
T 1yiq_A 414 YEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVP--YVTIFNGGTLSTAG----- 486 (689)
T ss_dssp EECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETT-----
T ss_pred eeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEcc--CCCCccCccceECC-----
Confidence 2679999999999888764 33334443455454
Q ss_pred CcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 415 QQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 415 ~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
.+++.|+.||.++.||.++++.
T Consensus 487 ---glvf~gt~dg~l~a~D~~tG~~ 508 (689)
T 1yiq_A 487 ---NLVFEGSADGRVIAYAADTGEK 508 (689)
T ss_dssp ---TEEEEECTTSEEEEEETTTCCE
T ss_pred ---CEEEEECCCCcEEEEECCCCcc
Confidence 5899999999999999999873
No 227
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.09 E-value=5e-09 Score=95.34 Aligned_cols=254 Identities=10% Similarity=0.059 Sum_probs=145.4
Q ss_pred CCCEEEEeeC-CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEE-c-cCCCeEEEEeecCCcceEEeecccccccccc
Q 013578 102 DGKCLATACA-DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAF-A-DNATSIVVATHNLSGCSLYMYGEEKAISTNE 178 (440)
Q Consensus 102 dg~~l~t~s~-dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~-~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (440)
||++|..... ++.|.+-|+++.+.. +.+ ..+....+..+++ . |+++++++++... +-
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~--~ii--~ip~g~~phg~~~~~~p~~~~v~~~~~~~----~p------------ 159 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCD--AIL--EIPNAKGIHGLRPQKWPRSNYVFCNGEDE----TP------------ 159 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEE--EEE--ECSSCCSEEEEEECCSSBCSEEEEEECSC----EE------------
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEe--eEE--eCCCCCCCcceeeeecCCCcEEEEecccc----cc------------
Confidence 8888877665 556999999886532 122 3444466788888 4 9999988776430 00
Q ss_pred ccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEec
Q 013578 179 GKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAIS 258 (440)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s 258 (440)
..+||+.+......++.+.++|..+.+.+.++.... ....++++
T Consensus 160 -----------------------------------~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~s 203 (595)
T 1fwx_A 160 -----------------------------------LVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDAD 203 (595)
T ss_dssp -----------------------------------SSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEEC
T ss_pred -----------------------------------cCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEEC
Confidence 022333222222345668889999988888877544 45678899
Q ss_pred CCCCeEEEEecCC---------------CEEEEEeEecC----CCceeee-------------ee-eeeeeccccceEEE
Q 013578 259 PNGRFLAAAAFTA---------------DVKVWEIVYSK----DGLVKAV-------------TS-VMQLKGHKSAVTWL 305 (440)
Q Consensus 259 ~~~~~l~~~~~dg---------------~i~i~d~~~~~----~~~~~~~-------------~~-~~~~~~h~~~v~~~ 305 (440)
|+|+++++.+.+. .|.++|..... ++..... .. +..+. -.....++
T Consensus 204 pdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv 282 (595)
T 1fwx_A 204 YEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGC 282 (595)
T ss_dssp SSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEE-EESSCCCE
T ss_pred CCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEe-cCCCceEE
Confidence 9999999988653 24444431110 0000000 01 11121 12245679
Q ss_pred EEcCCCCEEEEEe-CCCcEEEEecCccccccC-CCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEE
Q 013578 306 CFAPNSEQIITAS-KDGTLRVWNINVRYHLDE-DPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWL 381 (440)
Q Consensus 306 ~~~p~~~~l~s~~-~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~ 381 (440)
.++|||++++.++ .+.+|.++|+.+...... .............. ...-..++|+++| ++.+.. ++.|.+|
T Consensus 283 ~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v----G~gP~h~aF~~dG-~aY~t~~ldsqV~kw 357 (595)
T 1fwx_A 283 NMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL----GLGPLHTAFDGRG-NAYTSLFLDSQVVKW 357 (595)
T ss_dssp EECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC----CSCEEEEEECTTS-EEEEEETTTTEEEEE
T ss_pred EEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC----CCCcceEEECCCC-eEEEEEecCCcEEEE
Confidence 9999999877665 678999999996532100 00000000000011 1224569999999 555543 8999999
Q ss_pred EcCC----------ccchhhhhc----cccCCeEEEEecCCCCCCCCCcceEEEEeeC
Q 013578 382 SVET----------GKVLDTAEK----AHEGEITCMAWAPKTIPMGNQQVSVLATSSV 425 (440)
Q Consensus 382 d~~~----------~~~~~~~~~----~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~ 425 (440)
|+.+ .+.+..+.. +|...-.++.++||| ++|+++..
T Consensus 358 di~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DG--------k~l~~~Nk 407 (595)
T 1fwx_A 358 NIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATN--------DWLVCLSK 407 (595)
T ss_dssp EHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCS--------SEEEEEES
T ss_pred EhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCC--------CEEEEcCC
Confidence 9977 334444421 222222334567887 77777643
No 228
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.08 E-value=3.3e-09 Score=102.21 Aligned_cols=180 Identities=9% Similarity=0.043 Sum_probs=109.5
Q ss_pred CCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCC-------------EEEEEeEecCCCceeeeeeee
Q 013578 227 EGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTAD-------------VKVWEIVYSKDGLVKAVTSVM 293 (440)
Q Consensus 227 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-------------i~i~d~~~~~~~~~~~~~~~~ 293 (440)
....|++||+.+++.+... ........++|+ |++.|+.++.+.. |++|++.+... ....+.
T Consensus 153 ~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~----~~~~v~ 226 (693)
T 3iuj_A 153 DWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQE----DDRLVF 226 (693)
T ss_dssp CEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGG----GCEEEE
T ss_pred ceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcc----cceEEE
Confidence 3357999999999865431 112223567999 9999999987743 88888754431 111344
Q ss_pred eeec-cccceEEEEEcCCCCEEEEEeC----CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC
Q 013578 294 QLKG-HKSAVTWLCFAPNSEQIITASK----DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK 368 (440)
Q Consensus 294 ~~~~-h~~~v~~~~~~p~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 368 (440)
.... |...+.++.|+|||++|+.... +..|+++|+.++.. ....+ ..... ..... ++++|.
T Consensus 227 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~------~~~~l----~~~~~---~~~~~-~~~~g~ 292 (693)
T 3iuj_A 227 GAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA------PLLTV----QGDLD---ADVSL-VDNKGS 292 (693)
T ss_dssp SCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC------CCEEE----ECSSS---SCEEE-EEEETT
T ss_pred ecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC------ceEEE----eCCCC---ceEEE-EeccCC
Confidence 4444 5556789999999998754432 34899999875421 11111 11111 11122 566666
Q ss_pred EEE-Eec----CCEEEEEEcCCccc--hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEee-CCC--eEEEEeCCCC
Q 013578 369 ILA-ATH----GSTLQWLSVETGKV--LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSS-VDK--KVKLWLAPSL 437 (440)
Q Consensus 369 ~l~-~~~----~~~i~i~d~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~-~Dg--~i~vw~~~~~ 437 (440)
.|+ .+. .+.|..+++.++.. ...+ ..|...+. .|++++ ..|+... .|+ .|++|++..+
T Consensus 293 ~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l-~~~~~~~~--~~s~~g--------~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 293 TLYLLTNRDAPNRRLVTVDAANPGPAHWRDL-IPERQQVL--TVHSGS--------GYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp EEEEEECTTCTTCEEEEEETTSCCGGGCEEE-ECCCSSCE--EEEEET--------TEEEEEEEETTEEEEEEECTTSC
T ss_pred EEEEEECCCCCCCEEEEEeCCCCCccccEEE-ecCCCCEE--EEEEEC--------CEEEEEEEECCeeEEEEEECCCC
Confidence 544 333 36899999988764 2334 35665555 788876 5555444 454 6888888643
No 229
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.06 E-value=2e-08 Score=88.01 Aligned_cols=234 Identities=9% Similarity=0.015 Sum_probs=125.2
Q ss_pred cccCcceeEEEEccCCCEEEEeeC-----CCcEEEEecCCCCCcceeeEEec---CCCCCCCceEEEccCCCeEEEEeec
Q 013578 88 KGHGDSVTGLCFSSDGKCLATACA-----DGVIRVHKLDDASSKSFKFLRIN---LPPGGPPTAVAFADNATSIVVATHN 159 (440)
Q Consensus 88 ~~H~~~V~~l~~s~dg~~l~t~s~-----dg~v~vW~~~~~~~~~~~~~~~~---~~~~~~v~~v~~~~~~~~l~~~~~~ 159 (440)
.+|-..+.+++++++|+++++-.. ++.|.+||+.+++.. ...... ..+...+..+++++++..++++...
T Consensus 63 ~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~--~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~ 140 (343)
T 2qe8_A 63 IITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLS--RVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPA 140 (343)
T ss_dssp CCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEE--EEEECCTTTSCTTCCCCEEEEETTTTEEEEEECC
T ss_pred ccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEE--EEEECChhhcccccccceEEEecCCCEEEEEcCc
Confidence 357788999999999987665443 578999999866421 111111 1223456889999876555444321
Q ss_pred -CCcceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC
Q 013578 160 -LSGCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT 238 (440)
Q Consensus 160 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 238 (440)
.....+.+++...... |.....+.. .......+..+|. .+.+...++.++.|.
T Consensus 141 ~~~~~~i~v~d~~~g~~----------------~r~~~~~~~------~~~~~~~~~~~g~-~~~~~~~~g~~~~~~--- 194 (343)
T 2qe8_A 141 PDDKAALIRVDLQTGLA----------------ARVLQGYPG------IAPEDIDLVIDGV-PVQIGQPDGTVIRPH--- 194 (343)
T ss_dssp SGGGCEEEEEETTTCCE----------------EEECTTCTT------TSCCSCCCEETTE-ECBEECTTSCEECCC---
T ss_pred cCCCCeEEEEECCCCCE----------------EEEecCCCc------ccccccceeECCE-EEEeccCCCceecee---
Confidence 0123455554332210 000000000 0000011122332 333344444443332
Q ss_pred CceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEec--CCCceeeeee--eeeeeccccceEEEEEcCCCCEE
Q 013578 239 GKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYS--KDGLVKAVTS--VMQLKGHKSAVTWLCFAPNSEQI 314 (440)
Q Consensus 239 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~--~~~~~~h~~~v~~~~~~p~~~~l 314 (440)
..+..++++|+|+.|+++..++. ++|.+... ..+....... .....++.+....++++++|.++
T Consensus 195 -----------~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~ 262 (343)
T 2qe8_A 195 -----------LGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIY 262 (343)
T ss_dssp -----------CCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEE
T ss_pred -----------cccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEE
Confidence 13567999999999999887764 55665432 1110000000 01122344556789999999988
Q ss_pred EEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec
Q 013578 315 ITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH 374 (440)
Q Consensus 315 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 374 (440)
++...++.|.+||.+++... .... .........++|.++|+++++..
T Consensus 263 va~~~~~~V~~~d~~~G~~~-------~~~~------~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 263 VGDLAHSAIGVITSADRAYK-------LLVT------DEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp EEEGGGTEEEEEETTTTEEE-------EEEE------CGGGSCEEEEEECTTSCEEEEEC
T ss_pred EEccCCCeEEEEECCCCCEE-------EEEE------CCceecCCeeEECCCCcEEEEeC
Confidence 88888999999998433210 0000 00122356799999888776654
No 230
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.04 E-value=1.7e-07 Score=83.24 Aligned_cols=181 Identities=8% Similarity=0.043 Sum_probs=108.6
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcc-----cEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKN-----NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL 295 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 295 (440)
.++.++.++.|..+|..+++.+.......... ...... +..+++++.++.+..+|..+++ .+...
T Consensus 145 ~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~--------~~w~~ 214 (376)
T 3q7m_A 145 LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQ--------MIWQQ 214 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCC--------EEEEE
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCc--------EEEEE
Confidence 67778889999999999999887765432211 122222 4567888889999999976554 12111
Q ss_pred eccc--c-----ceEEEEEcC--CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC
Q 013578 296 KGHK--S-----AVTWLCFAP--NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD 366 (440)
Q Consensus 296 ~~h~--~-----~v~~~~~~p--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 366 (440)
.... . .+..+...| .+..++.++.++.+..+|.++++.+.... ... ...+.. .+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~------------~~~----~~~~~~-~~ 277 (376)
T 3q7m_A 215 RISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE------------LGS----VNDFIV-DG 277 (376)
T ss_dssp ECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC------------CCC----EEEEEE-ET
T ss_pred ecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc------------CCC----CCCceE-EC
Confidence 1100 0 000011111 24567788889999999998775432211 000 112222 24
Q ss_pred CCEEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 367 GKILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 367 g~~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
+.++++..++.|..+|..+|+.+..........+...... + ..|+.++.+|.+.++|..+++
T Consensus 278 ~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~-~---------~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 278 NRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY-N---------GNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp TEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE-T---------TEEEEECTTSEEEEEETTTCC
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE-C---------CEEEEEeCCCeEEEEECCCCc
Confidence 5555556688999999999998765431222223333332 2 368888889999999998876
No 231
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.03 E-value=3.9e-08 Score=85.41 Aligned_cols=188 Identities=10% Similarity=0.010 Sum_probs=117.5
Q ss_pred cCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeee
Q 013578 214 GTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM 293 (440)
Q Consensus 214 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 293 (440)
++++++.++++...++.|..||..+++.. .+.. ...+.+++++++|+++++. .+ .|.+||...+. .. .+.
T Consensus 56 ~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~-~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~---~~---~~~ 125 (326)
T 2ghs_A 56 FDPASGTAWWFNILERELHELHLASGRKT-VHAL-PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGV---LT---LHA 125 (326)
T ss_dssp EETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC-SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCC---EE---EEE
T ss_pred EeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEC-CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCc---EE---EEe
Confidence 46776667888888889999999877543 3332 3568899999999877654 44 48888864332 11 111
Q ss_pred eeec--cccceEEEEEcCCCCEEEEEeCC----CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC
Q 013578 294 QLKG--HKSAVTWLCFAPNSEQIITASKD----GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG 367 (440)
Q Consensus 294 ~~~~--h~~~v~~~~~~p~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 367 (440)
.... ....+..++++|+|+++++...+ +...||.+.++.. ..+. ........++|+|+|
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~--------~~~~-------~~~~~~~~i~~s~dg 190 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKV--------TKLF-------ADISIPNSICFSPDG 190 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEE--------EEEE-------EEESSEEEEEECTTS
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcE--------EEee-------CCCcccCCeEEcCCC
Confidence 1111 12458899999999976655422 2334444332211 0000 001124579999999
Q ss_pred CEEEEec--CCEEEEEEcC--Cc-cch-----hhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 368 KILAATH--GSTLQWLSVE--TG-KVL-----DTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 368 ~~l~~~~--~~~i~i~d~~--~~-~~~-----~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
+.|..+. ++.|.+|+.. ++ +.. ..+ ......+..+++.+++ .++++...++.|.+|+..
T Consensus 191 ~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~-~~~~~~p~gi~~d~~G--------~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 191 TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS-TGIKGGMDGSVCDAEG--------HIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC-TTSSSEEEEEEECTTS--------CEEEEEETTTEEEEECTT
T ss_pred CEEEEEECCCCEEEEEEcccccCCcccCceEEEEC-CCCCCCCCeeEECCCC--------CEEEEEeCCCEEEEECCC
Confidence 8765543 6899999986 56 321 111 1234567889999997 677776667889999874
No 232
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.96 E-value=1.2e-07 Score=82.58 Aligned_cols=182 Identities=14% Similarity=0.035 Sum_probs=117.6
Q ss_pred CCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee
Q 013578 215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ 294 (440)
Q Consensus 215 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 294 (440)
.+++. ++.++.++.|..+|.. ++.+..+......+.++...+++.+++. + +.|..+| ..+. ....
T Consensus 145 ~~~g~--l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~--------~~~~ 209 (330)
T 3hxj_A 145 SEDGT--IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFG-S--DKVYAIN-PDGT--------EKWN 209 (330)
T ss_dssp CTTSC--EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEE-S--SSEEEEC-TTSC--------EEEE
T ss_pred cCCCE--EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEE-e--CEEEEEC-CCCc--------EEEE
Confidence 33554 5667777889999998 8877777666666777888888875544 4 7888888 3332 2233
Q ss_pred eeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec
Q 013578 295 LKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH 374 (440)
Q Consensus 295 ~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 374 (440)
.......+.++...++|. |..++.++.|..+|... ..+. ... . ....+..+.+.+++.+.+++.
T Consensus 210 ~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g-~~~~-------~~~--~-----~~~~~~~~~~~~~g~l~v~t~ 273 (330)
T 3hxj_A 210 FYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG-TEKW-------RFK--T-----GKRIESSPVIGNTDTIYFGSY 273 (330)
T ss_dssp ECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS-CEEE-------EEE--C-----SSCCCSCCEECTTSCEEEECT
T ss_pred EccCCcceeceEECCCCe-EEEEcCCCeEEEECCCC-CEeE-------Eee--C-----CCCccccceEcCCCeEEEecC
Confidence 333445678888888775 55667778888887532 2111 010 0 011123456677888777777
Q ss_pred CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 375 GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 375 ~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
++.|..+|. +++.+..+. .....+.++...+++ .|..++.+|.+++...+..+
T Consensus 274 ~ggl~~~d~-~g~~~~~~~-~~~~~~~~~~~d~~g---------~l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 274 DGHLYAINP-DGTEKWNFE-TGSWIIATPVIDENG---------TIYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp TCEEEEECT-TSCEEEEEE-CSSCCCSCCEECTTC---------CEEEECTTSCEEEEEC----
T ss_pred CCCEEEECC-CCcEEEEEE-cCCccccceEEcCCC---------EEEEEcCCCeEEEEeccccc
Confidence 889999996 677665552 344567777777775 57778899999998876544
No 233
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.92 E-value=6.3e-07 Score=75.37 Aligned_cols=185 Identities=8% Similarity=-0.066 Sum_probs=108.4
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeeeeccc
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQLKGHK 299 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~ 299 (440)
++++....+.|..+++........+.........+++++++..|+.+. ..+.|.++++.... . ........
T Consensus 50 ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~----~----~~~~~~~~ 121 (267)
T 1npe_A 50 VYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ----R----RVLFDTGL 121 (267)
T ss_dssp EEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----C----EEEECSSC
T ss_pred EEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC----E----EEEEECCC
Confidence 444444566788888765543333332234568899999766666554 46778888864221 0 01111112
Q ss_pred cceEEEEEcCCCCEEEEEeC---CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--
Q 013578 300 SAVTWLCFAPNSEQIITASK---DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-- 374 (440)
Q Consensus 300 ~~v~~~~~~p~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-- 374 (440)
.....++++|++..|+.+.. .+.|..+++..... ..+ .. ........+++++++..|..++
T Consensus 122 ~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~--------~~~----~~--~~~~~P~gia~d~~~~~lyv~d~~ 187 (267)
T 1npe_A 122 VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR--------RIL----AQ--DNLGLPNGLTFDAFSSQLCWVDAG 187 (267)
T ss_dssp SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC--------EEE----EC--TTCSCEEEEEEETTTTEEEEEETT
T ss_pred CCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc--------EEE----EE--CCCCCCcEEEEcCCCCEEEEEECC
Confidence 45689999997665555443 36788888763211 000 00 0112245799999877665544
Q ss_pred CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 375 GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 375 ~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
.+.|.++|.........+. .......++... + .++++....+.|.+++..+++
T Consensus 188 ~~~I~~~~~~g~~~~~~~~--~~~~P~gi~~d~-~--------~lyva~~~~~~v~~~d~~~g~ 240 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVLE--GLQYPFAVTSYG-K--------NLYYTDWKTNSVIAMDLAISK 240 (267)
T ss_dssp TTEEEEEETTEEEEEEEEE--CCCSEEEEEEET-T--------EEEEEETTTTEEEEEETTTTE
T ss_pred CCEEEEEecCCCceEEEec--CCCCceEEEEeC-C--------EEEEEECCCCeEEEEeCCCCC
Confidence 6899999987654333221 223445676653 3 566666667899999987654
No 234
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.89 E-value=6.3e-08 Score=84.34 Aligned_cols=174 Identities=10% Similarity=0.007 Sum_probs=114.8
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~ 300 (440)
.+..++.++.|..+|.. ++...........+.++...+++. +++++.++.|..||.. +. ....+.....
T Consensus 109 ~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~--------~~~~~~~~~~ 177 (330)
T 3hxj_A 109 ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GT--------EKWRFKTNDA 177 (330)
T ss_dssp EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SC--------EEEEEECSSC
T ss_pred EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CC--------EeEEEecCCC
Confidence 57777888889999988 877766665555567777777776 5567778889999875 33 2233333445
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEE
Q 013578 301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQW 380 (440)
Q Consensus 301 ~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i 380 (440)
.+.++...+++..+ .++ +.|..+| .++..... .. .....+.++...++|.+.+++.++.|..
T Consensus 178 ~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~~~~~-------~~-------~~~~~~~~~~~~~~g~l~v~t~~~gl~~ 239 (330)
T 3hxj_A 178 ITSAASIGKDGTIY-FGS--DKVYAIN-PDGTEKWN-------FY-------AGYWTVTRPAISEDGTIYVTSLDGHLYA 239 (330)
T ss_dssp CCSCCEECTTCCEE-EES--SSEEEEC-TTSCEEEE-------EC-------CSSCCCSCCEECTTSCEEEEETTTEEEE
T ss_pred ceeeeEEcCCCEEE-EEe--CEEEEEC-CCCcEEEE-------Ec-------cCCcceeceEECCCCeEEEEcCCCeEEE
Confidence 56777777777744 444 7889999 54332211 00 0112366788899998888877888888
Q ss_pred EEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578 381 LSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA 434 (440)
Q Consensus 381 ~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~ 434 (440)
+|. +++.+..+. .....+..+...+++ .|..++.+|.|..++.
T Consensus 240 ~~~-~g~~~~~~~-~~~~~~~~~~~~~~g---------~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 240 INP-DGTEKWRFK-TGKRIESSPVIGNTD---------TIYFGSYDGHLYAINP 282 (330)
T ss_dssp ECT-TSCEEEEEE-CSSCCCSCCEECTTS---------CEEEECTTCEEEEECT
T ss_pred ECC-CCCEeEEee-CCCCccccceEcCCC---------eEEEecCCCCEEEECC
Confidence 874 565555442 233334455666554 5777788888988885
No 235
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.88 E-value=5.9e-08 Score=88.42 Aligned_cols=203 Identities=12% Similarity=0.013 Sum_probs=127.4
Q ss_pred CCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCC-CCcccEEEe-c-CCCCeEEEEec------------------CCCE
Q 013578 215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN-QLKNNMAAI-S-PNGRFLAAAAF------------------TADV 273 (440)
Q Consensus 215 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~-s-~~~~~l~~~~~------------------dg~i 273 (440)
.+||+.++++...+..|.+.|+.+.++...+... ......+++ + |+++++++++. ++.+
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 3577767777777888999999999988755432 234667777 5 99999998852 3456
Q ss_pred EEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC---------------cEEEEecCccccccCCC
Q 013578 274 KVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG---------------TLRVWNINVRYHLDEDP 338 (440)
Q Consensus 274 ~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg---------------~i~iwd~~~~~~~~~~~ 338 (440)
.+.|..+.+ ...++.-. +....++++|+|+++++.+.+. .|.+.|...........
T Consensus 178 tvID~~t~~--------v~~qI~Vg-g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~G 248 (595)
T 1fwx_A 178 TAVDADKWE--------VAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG 248 (595)
T ss_dssp EEEETTTTE--------EEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred EEEECCCCe--------EEEEEEeC-CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCC
Confidence 777764332 23333211 1346688999999999888653 25555543221100000
Q ss_pred -----CccccccccccCCC------CCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcCCccc------------hhhhh
Q 013578 339 -----KTLKVLPIPLLDSN------GATLQYDRLSLSSDGKILAATH--GSTLQWLSVETGKV------------LDTAE 393 (440)
Q Consensus 339 -----~~~~~~~~~~~~~~------~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~~~~~------------~~~~~ 393 (440)
.....+........ .-.....++.++|||+++++++ +..|.++|+.+.+. ...++
T Consensus 249 k~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~ 328 (595)
T 1fwx_A 249 DYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE 328 (595)
T ss_dssp CSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred CeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC
Confidence 00111110000000 0011234699999999988875 68999999997642 22222
Q ss_pred ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 394 KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 394 ~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
-......++|+|+| ...++.-.|+.|.+|++..
T Consensus 329 --vG~gP~h~aF~~dG--------~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 329 --LGLGPLHTAFDGRG--------NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp --CCSCEEEEEECTTS--------EEEEEETTTTEEEEEEHHH
T ss_pred --CCCCcceEEECCCC--------eEEEEEecCCcEEEEEhhH
Confidence 33468999999998 7777888899999999864
No 236
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.88 E-value=9.6e-08 Score=78.75 Aligned_cols=197 Identities=9% Similarity=0.052 Sum_probs=123.4
Q ss_pred cccCCCCCeEEEEeeC--CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceee
Q 013578 212 TYGTADGSTIIASCSE--GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKA 288 (440)
Q Consensus 212 ~~~~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~ 288 (440)
+.+++++. ++++.+. ++.|+++|+.+++.+..+..... .....+..+++.|+.+. .++.+.++|..+.+
T Consensus 26 l~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~------ 97 (266)
T 2iwa_A 26 LVYAENDT-LFESTGLYGRSSVRQVALQTGKVENIHKMDDS-YFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLS------ 97 (266)
T ss_dssp EEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEETTCSEEEEEETTTTE------
T ss_pred EEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEEEecCCC-cceEEEEEeCCEEEEEEecCCEEEEEECCCCc------
Confidence 44466653 4454443 57899999999999988764332 12222333455665555 57889999975443
Q ss_pred eeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC
Q 013578 289 VTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK 368 (440)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 368 (440)
.+.++...... ...+++||+.++.+..++.|.++|..+.+.... +.. ..........+.+.|. +|+
T Consensus 98 --v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~-------I~V--g~~~~p~~~~nele~~-dg~ 163 (266)
T 2iwa_A 98 --NIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKK-------HNV--KYNGHRVIRLNELEYI-NGE 163 (266)
T ss_dssp --EEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEE-------EEC--EETTEECCCEEEEEEE-TTE
T ss_pred --EEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEE-------EEE--CCCCcccccceeEEEE-CCE
Confidence 33334321111 233556888777777788999999986543221 111 1000011124456777 776
Q ss_pred EEEEec-CCEEEEEEcCCccchhhhhccc------------cCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 369 ILAATH-GSTLQWLSVETGKVLDTAEKAH------------EGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 369 ~l~~~~-~~~i~i~d~~~~~~~~~~~~~h------------~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
+.+... ++.|.+.|..+++.+..+..+. ....+.|+|+|++. ++++|+...+++.+-++.
T Consensus 164 lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~-------~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 164 VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK-------RIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT-------EEEEEETTCSEEEEEEEE
T ss_pred EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCC-------EEEEECCCCCeEEEEEEe
Confidence 555543 7899999999999877664210 13568999999862 688888889999998876
Q ss_pred CC
Q 013578 436 SL 437 (440)
Q Consensus 436 ~~ 437 (440)
..
T Consensus 237 ~~ 238 (266)
T 2iwa_A 237 LV 238 (266)
T ss_dssp EC
T ss_pred cc
Confidence 54
No 237
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.85 E-value=9.8e-07 Score=72.77 Aligned_cols=154 Identities=8% Similarity=-0.080 Sum_probs=94.8
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec--c
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG--H 298 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--h 298 (440)
+.++.-.++.+.++|..+++.+.++..... ....+++||+.++++..+++|.++|..+.+ ....+.- .
T Consensus 78 lyv~t~~~~~v~viD~~t~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~--------v~~~I~Vg~~ 147 (266)
T 2iwa_A 78 LYQVVWLKNIGFIYDRRTLSNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFK--------LIKKHNVKYN 147 (266)
T ss_dssp EEEEETTCSEEEEEETTTTEEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCC--------EEEEEECEET
T ss_pred EEEEEecCCEEEEEECCCCcEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCc--------EEEEEEECCC
Confidence 455556788899999999999988865411 234466788888888788889999975433 2222221 1
Q ss_pred ---ccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-ec
Q 013578 299 ---KSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-TH 374 (440)
Q Consensus 299 ---~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~ 374 (440)
-..++.+.|. ++..++....++.|.+.|..+++......-.. ..+...............++|+|+++.+.+ +.
T Consensus 148 ~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g-~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk 225 (266)
T 2iwa_A 148 GHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPN-LRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK 225 (266)
T ss_dssp TEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHH-HHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET
T ss_pred CcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCC-cccccccccccccCceEEEEEcCCCCEEEEECC
Confidence 1236788888 67655555567899999999876543211100 000000011111223568999999875554 43
Q ss_pred -CCEEEEEEcCCc
Q 013578 375 -GSTLQWLSVETG 386 (440)
Q Consensus 375 -~~~i~i~d~~~~ 386 (440)
.+.++..++...
T Consensus 226 ~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 226 LWPKLFEIKLHLV 238 (266)
T ss_dssp TCSEEEEEEEEEC
T ss_pred CCCeEEEEEEecc
Confidence 578888777554
No 238
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.84 E-value=2.2e-07 Score=88.86 Aligned_cols=165 Identities=15% Similarity=0.109 Sum_probs=98.3
Q ss_pred eEEEEeCCCCceeeeeeCCCC---------cccEEEecCCC---CeEEEEecCCCEEEEEeEecCCCceeeeee---eee
Q 013578 230 DISIWHGKTGKLLGNVDTNQL---------KNNMAAISPNG---RFLAAAAFTADVKVWEIVYSKDGLVKAVTS---VMQ 294 (440)
Q Consensus 230 ~i~vwd~~~~~~~~~~~~~~~---------~v~~~~~s~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~ 294 (440)
.|..+|..+|+.+..++.... ....+....+| ..++.++.+|.++++|..+++......... ...
T Consensus 284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~ 363 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (677)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence 599999999998877654211 12222333477 689999999999999976654100000000 000
Q ss_pred eeccccce------------------------EEEEEcCCCCEEEEEeCC------------------------------
Q 013578 295 LKGHKSAV------------------------TWLCFAPNSEQIITASKD------------------------------ 320 (440)
Q Consensus 295 ~~~h~~~v------------------------~~~~~~p~~~~l~s~~~d------------------------------ 320 (440)
+.....++ ..++|+|+..++++...+
T Consensus 364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g 443 (677)
T 1kb0_A 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA 443 (677)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence 00000000 257889988888776532
Q ss_pred -------------CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCc
Q 013578 321 -------------GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETG 386 (440)
Q Consensus 321 -------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~ 386 (440)
|.|..||+.+++.+.+.... ..+....+..++.+++.+. ++.+++||..+|
T Consensus 444 ~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~---------------~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG 508 (677)
T 1kb0_A 444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV---------------SPWNGGTLTTAGNVVFQGTADGRLVAYHAATG 508 (677)
T ss_dssp EEECSSCCCSCCEEEEEEEETTTTEEEEEEEES---------------SSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred cccccccCCCCCccEEEEEeCCCCcEEeecCCC---------------CCCcCcceEeCCCEEEEECCCCcEEEEECCCC
Confidence 67888888876543221100 0122334555666666554 899999999999
Q ss_pred cchhhhhccccCCeEEEEecCCC
Q 013578 387 KVLDTAEKAHEGEITCMAWAPKT 409 (440)
Q Consensus 387 ~~~~~~~~~h~~~v~~v~~~~~~ 409 (440)
+.+..+..++.....-+.|..++
T Consensus 509 ~~lw~~~~~~~~~~~p~~y~~~G 531 (677)
T 1kb0_A 509 EKLWEAPTGTGVVAAPSTYMVDG 531 (677)
T ss_dssp CEEEEEECSSCCCSCCEEEEETT
T ss_pred ceeeeeeCCCCcccCCEEEEeCC
Confidence 99988864554444556666776
No 239
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.82 E-value=5.3e-07 Score=79.31 Aligned_cols=191 Identities=12% Similarity=0.089 Sum_probs=118.2
Q ss_pred CCCCeEEEEeeCCceEEEEeCCCC----ceeeeee-------CCCCcccEEEecCCCCeEEEEecC------CCEEEEEe
Q 013578 216 ADGSTIIASCSEGTDISIWHGKTG----KLLGNVD-------TNQLKNNMAAISPNGRFLAAAAFT------ADVKVWEI 278 (440)
Q Consensus 216 ~~~~~~l~s~~~d~~i~vwd~~~~----~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~d------g~i~i~d~ 278 (440)
.+.+.+++++..++.|+++|..+. +..+.++ ........+...|+| +++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 678878888999999999998755 5555552 112234557788999 66666555 67999997
Q ss_pred EecCCCceeeeeeeeeeecc--c-cceEEEEEcCCCCEEEEEe-------------------CCCcEEEEecCccccccC
Q 013578 279 VYSKDGLVKAVTSVMQLKGH--K-SAVTWLCFAPNSEQIITAS-------------------KDGTLRVWNINVRYHLDE 336 (440)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~h--~-~~v~~~~~~p~~~~l~s~~-------------------~dg~i~iwd~~~~~~~~~ 336 (440)
.+.+ .+..+... . .--..+.|+|+++.+++.. .+.+|.+||+.+++...
T Consensus 172 ~T~~--------v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~- 242 (462)
T 2ece_A 172 YSFE--------PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH- 242 (462)
T ss_dssp TTCC--------EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE-
T ss_pred CCCe--------EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee-
Confidence 5443 34444321 1 1234588899999888874 36799999998653321
Q ss_pred CCCccccccccccCCCCCeeeeeeE--EeCCCCCEEEEe-------cCCEEEEEEcCCcc-------------chhhhh-
Q 013578 337 DPKTLKVLPIPLLDSNGATLQYDRL--SLSSDGKILAAT-------HGSTLQWLSVETGK-------------VLDTAE- 393 (440)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~g~~l~~~-------~~~~i~i~d~~~~~-------------~~~~~~- 393 (440)
.+.. .........+ +|+|+++++.++ .++.|.+|....++ ....+.
T Consensus 243 ------tI~v-----g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~ 311 (462)
T 2ece_A 243 ------SLTL-----GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPE 311 (462)
T ss_dssp ------EEES-----CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCG
T ss_pred ------EEec-----CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccc
Confidence 1111 0011112234 459999976653 34677665543332 111110
Q ss_pred --c---cccCCeEEEEecCCCCCCCCCcceEEEEeeC-CCeEEEEeCC
Q 013578 394 --K---AHEGEITCMAWAPKTIPMGNQQVSVLATSSV-DKKVKLWLAP 435 (440)
Q Consensus 394 --~---~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~-Dg~i~vw~~~ 435 (440)
. +-......|.+++|+ ++|..+.. .+.|.+|++.
T Consensus 312 ~~~~f~~~~~~pa~I~lS~DG--------rfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 312 ILKPFKAVPPLVTDIDISLDD--------KFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp GGGGGTEECCCCCCEEECTTS--------CEEEEEETTTTEEEEEECS
T ss_pred cccccccCCCceeEEEECCCC--------CEEEEEeCCCCEEEEEEec
Confidence 0 002457899999998 66655544 7899999985
No 240
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.82 E-value=2.3e-06 Score=75.99 Aligned_cols=176 Identities=11% Similarity=0.139 Sum_probs=106.3
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCc-------ccEEEecC--CCCeEEEEecCCCEEEEEeEecCCCceeeeee
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLK-------NNMAAISP--NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTS 291 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-------v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 291 (440)
.++.+..++.|..+|..+++.+......... +..+...| .+..+++++.++.+..+|..+++ .
T Consensus 190 ~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~--------~ 261 (376)
T 3q7m_A 190 AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQ--------I 261 (376)
T ss_dssp EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCC--------E
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCc--------E
Confidence 5777888999999999999987766532110 00000111 35677788889999999986554 2
Q ss_pred eeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE
Q 013578 292 VMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA 371 (440)
Q Consensus 292 ~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 371 (440)
+.... ......+.. ++..++.++.++.|..+|..+++.+...... .. ..+..... .++.+++
T Consensus 262 ~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~-----------~~--~~~~~~~~-~~~~l~v 323 (376)
T 3q7m_A 262 MWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDL-----------LH--RLLTSPVL-YNGNLVV 323 (376)
T ss_dssp EEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTT-----------TT--SCCCCCEE-ETTEEEE
T ss_pred Eeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeeccc-----------CC--CcccCCEE-ECCEEEE
Confidence 22221 122334444 4667888888999999999877643221100 00 00111122 1345555
Q ss_pred EecCCEEEEEEcCCccchhhhhccccCCeEE-EEecCCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578 372 ATHGSTLQWLSVETGKVLDTAEKAHEGEITC-MAWAPKTIPMGNQQVSVLATSSVDKKVKLWL 433 (440)
Q Consensus 372 ~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~-v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~ 433 (440)
...+|.|+++|..+|+.+.... .....+.. ... .+ ..|+.++.||.|..|+
T Consensus 324 ~~~~g~l~~~d~~tG~~~~~~~-~~~~~~~~~~~~-~~---------~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 324 GDSEGYLHWINVEDGRFVAQQK-VDSSGFQTEPVA-AD---------GKLLIQAKDGTVYSIT 375 (376)
T ss_dssp ECTTSEEEEEETTTCCEEEEEE-CCTTCBCSCCEE-ET---------TEEEEEBTTSCEEEEE
T ss_pred EeCCCeEEEEECCCCcEEEEEe-cCCCcceeCCEE-EC---------CEEEEEeCCCEEEEEe
Confidence 5568999999999999877653 22223322 222 23 3678888999999987
No 241
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.81 E-value=2.5e-06 Score=71.66 Aligned_cols=220 Identities=15% Similarity=0.087 Sum_probs=124.6
Q ss_pred cceeEEEEccCCCEEE-EeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecc
Q 013578 92 DSVTGLCFSSDGKCLA-TACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGE 170 (440)
Q Consensus 92 ~~V~~l~~s~dg~~l~-t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~ 170 (440)
..+.+++|++++..|+ +-..++.|.+++.+..... .........+..+++++++..+.
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-----~~~~~~~~~p~~ia~d~~~~~ly---------------- 94 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-----TIIRQDLGSPEGIALDHLGRTIF---------------- 94 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-----EEECTTCCCEEEEEEETTTTEEE----------------
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE-----EEEECCCCCccEEEEEecCCeEE----------------
Confidence 4578999999765555 4456788999998754321 11111113456666666544333
Q ss_pred ccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCC
Q 013578 171 EKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQL 250 (440)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 250 (440)
++....+.|.++++..............
T Consensus 95 ----------------------------------------------------v~d~~~~~I~~~~~~g~~~~~~~~~~~~ 122 (267)
T 1npe_A 95 ----------------------------------------------------WTDSQLDRIEVAKMDGTQRRVLFDTGLV 122 (267)
T ss_dssp ----------------------------------------------------EEETTTTEEEEEETTSCSCEEEECSSCS
T ss_pred ----------------------------------------------------EEECCCCEEEEEEcCCCCEEEEEECCCC
Confidence 3333345566666543222111222223
Q ss_pred cccEEEecCCCCeEEEEecC---CCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEE-EeCCCcEEEE
Q 013578 251 KNNMAAISPNGRFLAAAAFT---ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIIT-ASKDGTLRVW 326 (440)
Q Consensus 251 ~v~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s-~~~dg~i~iw 326 (440)
....++++|++..|+.+... +.|..+++.... .. .+ ..........++++|++..|+. -...+.|.++
T Consensus 123 ~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~----~~--~~--~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~ 194 (267)
T 1npe_A 123 NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN----RR--IL--AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL 194 (267)
T ss_dssp SEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC----CE--EE--ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC----cE--EE--EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEE
Confidence 45789999977666666543 567777753211 10 11 1122345789999998766654 4456789999
Q ss_pred ecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe--cCCEEEEEEcCCccchhhhhccccCCeEEEE
Q 013578 327 NINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT--HGSTLQWLSVETGKVLDTAEKAHEGEITCMA 404 (440)
Q Consensus 327 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~--~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 404 (440)
|+....... . ....... ..++.. +..|..+ .++.|..+|..+++.+..+..+.......++
T Consensus 195 ~~~g~~~~~-------~-----~~~~~~P---~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~ 257 (267)
T 1npe_A 195 NPAQPGRRK-------V-----LEGLQYP---FAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGIT 257 (267)
T ss_dssp ETTEEEEEE-------E-----EECCCSE---EEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEE
T ss_pred ecCCCceEE-------E-----ecCCCCc---eEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceee
Confidence 987532110 0 0111112 245543 3444433 3689999999999988777433333577888
Q ss_pred ecCCC
Q 013578 405 WAPKT 409 (440)
Q Consensus 405 ~~~~~ 409 (440)
+.|++
T Consensus 258 ~~~~~ 262 (267)
T 1npe_A 258 IALSQ 262 (267)
T ss_dssp EECSC
T ss_pred ecCcc
Confidence 88875
No 242
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.80 E-value=7.2e-07 Score=85.47 Aligned_cols=180 Identities=14% Similarity=0.123 Sum_probs=103.8
Q ss_pred cCCCCCeEEEEeeCCc-------------------eEEEEeCCCCceeeeeeCCCC---------cccEEEecCCCC---
Q 013578 214 GTADGSTIIASCSEGT-------------------DISIWHGKTGKLLGNVDTNQL---------KNNMAAISPNGR--- 262 (440)
Q Consensus 214 ~~~~~~~~l~s~~~d~-------------------~i~vwd~~~~~~~~~~~~~~~---------~v~~~~~s~~~~--- 262 (440)
+.+++. +++.++.++ .|..+|..+|+.+..++.... .........+|+
T Consensus 242 ~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~ 320 (689)
T 1yiq_A 242 YDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRK 320 (689)
T ss_dssp EETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEE
T ss_pred EcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEE
Confidence 345555 666666665 399999999999877764211 111112223565
Q ss_pred eEEEEecCCCEEEEEeEecCCCceeeeee---eee-----------------eecccc-----------ceEEEEEcCCC
Q 013578 263 FLAAAAFTADVKVWEIVYSKDGLVKAVTS---VMQ-----------------LKGHKS-----------AVTWLCFAPNS 311 (440)
Q Consensus 263 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~-----------------~~~h~~-----------~v~~~~~~p~~ 311 (440)
.++.++.+|.++++|..+++......... ... +..... .-..++|+|+.
T Consensus 321 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~ 400 (689)
T 1yiq_A 321 VLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT 400 (689)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC
Confidence 78899999999999976554100000000 000 000000 01237889988
Q ss_pred CEEEEEeC---------------------------------------------CCcEEEEecCccccccCCCCccccccc
Q 013578 312 EQIITASK---------------------------------------------DGTLRVWNINVRYHLDEDPKTLKVLPI 346 (440)
Q Consensus 312 ~~l~s~~~---------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~ 346 (440)
.++++... +|.|+.||+.+++.+.+...
T Consensus 401 ~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~------- 473 (689)
T 1yiq_A 401 GLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY------- 473 (689)
T ss_dssp TEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE-------
T ss_pred CEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC-------
Confidence 87777643 25677777776654322110
Q ss_pred cccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCCccchhhhhccccCCeEEEEecCCC
Q 013578 347 PLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKT 409 (440)
Q Consensus 347 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~ 409 (440)
. ..+....+...+.+++.++ |+.++.||.++|+.+..+..++.....-+.|..++
T Consensus 474 --~------~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G 529 (689)
T 1yiq_A 474 --V------TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDG 529 (689)
T ss_dssp --S------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred --C------CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECC
Confidence 0 0011224445566666655 89999999999999988754444334557777776
No 243
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.80 E-value=2.1e-06 Score=74.42 Aligned_cols=115 Identities=9% Similarity=0.014 Sum_probs=70.4
Q ss_pred ceEEEEEcCCCCEEEEE-eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-----
Q 013578 301 AVTWLCFAPNSEQIITA-SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH----- 374 (440)
Q Consensus 301 ~v~~~~~~p~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----- 374 (440)
....++++|++++|+.+ +.++.|.+|++..... .....+. ...+ ...+++.++|.+.++..
T Consensus 186 ~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-----~~~~~~~----~~~g----P~gi~~d~~G~l~va~~~~~~~ 252 (322)
T 2fp8_A 186 VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-----GTAEVLV----KIPN----PGNIKRNADGHFWVSSSEELDG 252 (322)
T ss_dssp CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-----TCEEEEE----ECSS----EEEEEECTTSCEEEEEEEETTS
T ss_pred cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-----CccceEE----eCCC----CCCeEECCCCCEEEEecCcccc
Confidence 45679999999866555 5668999999874310 0111110 0111 35689999998766643
Q ss_pred ------CCEEEEEEcCCccchhhhhccc---cCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 375 ------GSTLQWLSVETGKVLDTAEKAH---EGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 375 ------~~~i~i~d~~~~~~~~~~~~~h---~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
.+.|..+|.. ++.+..+.... -..++.+++. ++ .++++....+.|.++++....
T Consensus 253 ~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~-~g--------~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 253 NMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEH-DG--------LLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp STTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEE-TT--------EEEEECSSCSEEEEEEC----
T ss_pred cccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEEe-CC--------EEEEeecCCCceEEEeccccc
Confidence 3568888864 66655543211 2346677764 44 677777778999999987544
No 244
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.78 E-value=2.1e-07 Score=75.64 Aligned_cols=178 Identities=11% Similarity=0.070 Sum_probs=111.4
Q ss_pred CCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeeee
Q 013578 218 GSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQLK 296 (440)
Q Consensus 218 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 296 (440)
+..++.+.+.++.|+++|+++++.+..+ ... .....-+.++++.|+... .++.+.+||..+.+ .+.++.
T Consensus 64 ~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~--------~~~ti~ 133 (268)
T 3nok_A 64 QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQ--------RERTTR 133 (268)
T ss_dssp TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECSSCEEEEESSSCEEEEEETTTTE--------EEEEEE
T ss_pred CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeCCEEEEEEccCCEEEEEECCcCc--------EEEEEe
Confidence 3447788888889999999999988877 332 333322334455555554 57889999986544 344444
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-C
Q 013578 297 GHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-G 375 (440)
Q Consensus 297 ~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~ 375 (440)
.. ..-..++ +++..|+.+..++.|.++|.++.+.... +.. .........++.+.|. +|++.+... +
T Consensus 134 ~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~-------I~V--~~~g~~v~~lNeLe~~-dG~lyanvw~s 200 (268)
T 3nok_A 134 YS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGA-------VQV--KLRGQPVELINELECA-NGVIYANIWHS 200 (268)
T ss_dssp CS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEE-------EEC--EETTEECCCEEEEEEE-TTEEEEEETTC
T ss_pred CC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEE-------EEe--CCCCcccccccccEEe-CCEEEEEECCC
Confidence 22 1223444 4678887777788999999887644321 111 1111111123456665 777666553 7
Q ss_pred CEEEEEEcCCccchhhhhcc------------ccCCeEEEEecCCCCCCCCCcceEEEEeeC
Q 013578 376 STLQWLSVETGKVLDTAEKA------------HEGEITCMAWAPKTIPMGNQQVSVLATSSV 425 (440)
Q Consensus 376 ~~i~i~d~~~~~~~~~~~~~------------h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~ 425 (440)
+.|.+.|.++|+.+..+... -....+.|+|+|++. ++++||-.
T Consensus 201 ~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~-------rlfVTGK~ 255 (268)
T 3nok_A 201 SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSG-------RIFMTGKL 255 (268)
T ss_dssp SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTC-------CEEEEETT
T ss_pred CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCC-------EEEEeCCC
Confidence 89999999999887655311 123678999999761 56776643
No 245
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.70 E-value=1.1e-06 Score=83.85 Aligned_cols=193 Identities=11% Similarity=0.040 Sum_probs=115.6
Q ss_pred CceEEEEeCCCCceeeeeeCCC-------------------------------CcccEEEecCCCCeEEEEecCCC----
Q 013578 228 GTDISIWHGKTGKLLGNVDTNQ-------------------------------LKNNMAAISPNGRFLAAAAFTAD---- 272 (440)
Q Consensus 228 d~~i~vwd~~~~~~~~~~~~~~-------------------------------~~v~~~~~s~~~~~l~~~~~dg~---- 272 (440)
++.|+.+|..+|+.+..+.... .....++++++...+++++.++.
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~ 256 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR 256 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence 5789999999998887664310 01124688888888888887663
Q ss_pred ---------------EEEEEeEecCCCceeeeeeeeeeec--cc-------cceEEEEEcCCCC---EEEEEeCCCcEEE
Q 013578 273 ---------------VKVWEIVYSKDGLVKAVTSVMQLKG--HK-------SAVTWLCFAPNSE---QIITASKDGTLRV 325 (440)
Q Consensus 273 ---------------i~i~d~~~~~~~~~~~~~~~~~~~~--h~-------~~v~~~~~~p~~~---~l~s~~~dg~i~i 325 (440)
|..+|..+++ .+-.++. |. .+.....+..+|+ .++.++.+|.+.+
T Consensus 257 ~~~~~~~gd~l~~~~v~AlD~~tG~--------~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~ 328 (668)
T 1kv9_A 257 EVRSPGGGDNLYLSSILAIRPDTGK--------LAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYV 328 (668)
T ss_dssp HHHSTTCCCCTTTTEEEEECTTTCC--------EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEE
T ss_pred CCCCCCCCCceeeeeEEEEcCCCCc--------eeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEE
Confidence 7778876655 2222221 22 2233333334665 6888999999999
Q ss_pred EecCccccccCCCCcc----ccc----ccccc------C--------CCCCeeeeeeEEeCCCCCEEEEe----------
Q 013578 326 WNINVRYHLDEDPKTL----KVL----PIPLL------D--------SNGATLQYDRLSLSSDGKILAAT---------- 373 (440)
Q Consensus 326 wd~~~~~~~~~~~~~~----~~~----~~~~~------~--------~~~~~~~v~~~~~s~~g~~l~~~---------- 373 (440)
+|.++++.+....... ..+ ..+.. . ..........++++|+..++.+.
T Consensus 329 lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~ 408 (668)
T 1kv9_A 329 LDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRN 408 (668)
T ss_dssp EETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECC
T ss_pred EECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeee
Confidence 9999887652110000 000 00000 0 00000112236777776654431
Q ss_pred ---------------------------cCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCC
Q 013578 374 ---------------------------HGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD 426 (440)
Q Consensus 374 ---------------------------~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D 426 (440)
.++.|..||..+|+.+.... +........+...+ .+++.++.|
T Consensus 409 ~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~~~~~t~g--------g~vf~g~~d 478 (668)
T 1kv9_A 409 EGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVP--YPTHWNGGTLSTAG--------NLVFQGTAA 478 (668)
T ss_dssp CGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETT--------TEEEEECTT
T ss_pred eccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEcc--CCCCCcCceeEeCC--------CEEEEECCc
Confidence 13789999999999887764 33333333333344 588889999
Q ss_pred CeEEEEeCCCCC
Q 013578 427 KKVKLWLAPSLE 438 (440)
Q Consensus 427 g~i~vw~~~~~~ 438 (440)
|.++.||..+++
T Consensus 479 g~l~a~d~~tG~ 490 (668)
T 1kv9_A 479 GQMHAYSADKGE 490 (668)
T ss_dssp SEEEEEETTTCC
T ss_pred ccchhhhhhcCh
Confidence 999999999886
No 246
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.68 E-value=3.7e-06 Score=68.44 Aligned_cols=141 Identities=9% Similarity=0.015 Sum_probs=84.8
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee----
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK---- 296 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---- 296 (440)
+.+..-.++.+.+||..+.+.+.++..... ...++++++.|+....+++|.++|..+.+ .+..+.
T Consensus 99 ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e---G~glt~dg~~L~~SdGs~~i~~iDp~T~~--------v~~~I~V~~~ 167 (262)
T 3nol_A 99 IVGLTWKNGLGFVWNIRNLRQVRSFNYDGE---GWGLTHNDQYLIMSDGTPVLRFLDPESLT--------PVRTITVTAH 167 (262)
T ss_dssp EEEEESSSSEEEEEETTTCCEEEEEECSSC---CCCEEECSSCEEECCSSSEEEEECTTTCS--------EEEEEECEET
T ss_pred EEEEEeeCCEEEEEECccCcEEEEEECCCC---ceEEecCCCEEEEECCCCeEEEEcCCCCe--------EEEEEEeccC
Confidence 444455688899999999999999876432 23344678888888777889998875443 222221
Q ss_pred ccc-cceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecC
Q 013578 297 GHK-SAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHG 375 (440)
Q Consensus 297 ~h~-~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 375 (440)
+.. ..++.+.|. +|+.++..-.++.|.+.|.++++......... ..+ ..........-.+.++|+|+++.|.+...
T Consensus 168 g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~-L~~-~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 168 GEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNG-ILA-EAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTT-GGG-GSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCc-Ccc-ccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 111 334567776 67655555568899999999876543211100 000 00000111223578999998776655443
No 247
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.68 E-value=9.7e-07 Score=71.86 Aligned_cols=176 Identities=16% Similarity=0.193 Sum_probs=109.5
Q ss_pred eEEEEeeCCc--eEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeeee
Q 013578 220 TIIASCSEGT--DISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQLK 296 (440)
Q Consensus 220 ~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 296 (440)
.++.+.+.+| .|+++|+++++.+..+.... ......+.++++.|+... .++.+.+||..+.+ .+.++.
T Consensus 54 ~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~--------~~~ti~ 124 (262)
T 3nol_A 54 YFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR--------QVRSFN 124 (262)
T ss_dssp EEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCC--------EEEEEE
T ss_pred EEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCc--------EEEEEE
Confidence 3666776665 89999999999998887643 333333444566666665 47889999986554 444444
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCe-eeeeeEEeCCCCCEEEEec-
Q 013578 297 GHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGAT-LQYDRLSLSSDGKILAATH- 374 (440)
Q Consensus 297 ~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~- 374 (440)
... ....+++++..|+.+..++.|.++|..+.+.... ++.. . .+.. ..++.+.|. +|++.+...
T Consensus 125 ~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~-------I~V~--~-~g~~~~~lNELe~~-~G~lyan~w~ 190 (262)
T 3nol_A 125 YDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRT-------ITVT--A-HGEELPELNELEWV-DGEIFANVWQ 190 (262)
T ss_dssp CSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEE-------EECE--E-TTEECCCEEEEEEE-TTEEEEEETT
T ss_pred CCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEE-------EEec--c-CCccccccceeEEE-CCEEEEEEcc
Confidence 221 2223335777777776678899999986543321 1111 0 0111 123346665 777666553
Q ss_pred CCEEEEEEcCCccchhhhhcc-----------ccCCeEEEEecCCCCCCCCCcceEEEEeeC
Q 013578 375 GSTLQWLSVETGKVLDTAEKA-----------HEGEITCMAWAPKTIPMGNQQVSVLATSSV 425 (440)
Q Consensus 375 ~~~i~i~d~~~~~~~~~~~~~-----------h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~ 425 (440)
++.|.+.|.++|+.+..+... -....+.|+|+|+.. ++++||-.
T Consensus 191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~-------~lfVTGK~ 245 (262)
T 3nol_A 191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH-------RLFVTGKL 245 (262)
T ss_dssp SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT-------EEEEEETT
T ss_pred CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCC-------EEEEECCC
Confidence 789999999999987665311 123568999999861 55666543
No 248
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.67 E-value=1.6e-05 Score=74.29 Aligned_cols=196 Identities=8% Similarity=-0.029 Sum_probs=110.1
Q ss_pred CCceEEEEeCCCCceeeeeeCCCCcc--------------------------------------cEEEecCCCCeEEEEe
Q 013578 227 EGTDISIWHGKTGKLLGNVDTNQLKN--------------------------------------NMAAISPNGRFLAAAA 268 (440)
Q Consensus 227 ~d~~i~vwd~~~~~~~~~~~~~~~~v--------------------------------------~~~~~s~~~~~l~~~~ 268 (440)
.++.|+.+|.++|+.+-.+....... ..+++.++...++.++
T Consensus 180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~ 259 (599)
T 1w6s_A 180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT 259 (599)
T ss_dssp CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC
Confidence 37899999999999887665432110 1345667777888877
Q ss_pred cCC----------------CEEEEEeEecCCCceeeeeeeeeeeccc--------cceEEEEEc-CCC---CEEEEEeCC
Q 013578 269 FTA----------------DVKVWEIVYSKDGLVKAVTSVMQLKGHK--------SAVTWLCFA-PNS---EQIITASKD 320 (440)
Q Consensus 269 ~dg----------------~i~i~d~~~~~~~~~~~~~~~~~~~~h~--------~~v~~~~~~-p~~---~~l~s~~~d 320 (440)
.++ .|..+|..+++ ..+. .+...|. .++. +... .+| ..++.++.+
T Consensus 260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~----~~W~--~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~ 332 (599)
T 1w6s_A 260 GNPAPWNETMRPGDNKWTMTIFGRDADTGE----AKFG--YQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRN 332 (599)
T ss_dssp CCCSCSCGGGSCSCCTTSSEEEEEETTTCC----EEEE--EESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTT
T ss_pred CCCccccCcccCCCccccceEEEEeCCCCc----eeeE--eecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCC
Confidence 653 67777776554 1111 1112221 2222 2222 467 467778899
Q ss_pred CcEEEEecCccccccCCCCcc-------------ccccccccC------------CCCCeeeeeeEEeCCCCCEEEEe--
Q 013578 321 GTLRVWNINVRYHLDEDPKTL-------------KVLPIPLLD------------SNGATLQYDRLSLSSDGKILAAT-- 373 (440)
Q Consensus 321 g~i~iwd~~~~~~~~~~~~~~-------------~~~~~~~~~------------~~~~~~~v~~~~~s~~g~~l~~~-- 373 (440)
|.+.++|.++++.+....... +....+... ..........++++|+..++.+.
T Consensus 333 G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~ 412 (599)
T 1w6s_A 333 GIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGIN 412 (599)
T ss_dssp SEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEE
T ss_pred cEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEecc
Confidence 999999999887653221100 000000000 00000112346677765544331
Q ss_pred --------------------------------------cCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCC
Q 013578 374 --------------------------------------HGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQ 415 (440)
Q Consensus 374 --------------------------------------~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~ 415 (440)
..+.|..||..+|+.+.+.. +..++..-.....+
T Consensus 413 ~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~--~~~~~~~g~~~tag------ 484 (599)
T 1w6s_A 413 HICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKM--ERFAVWGGTMATAG------ 484 (599)
T ss_dssp CEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEE--ESSCCCSBCEEETT------
T ss_pred ccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEec--CCCCccCcceEecC------
Confidence 23678888888888877653 22222211111122
Q ss_pred cceEEEEeeCCCeEEEEeCCCCCC
Q 013578 416 QVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 416 ~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
.+++.++.||.++.||.++++.
T Consensus 485 --g~vf~gt~dg~l~A~D~~tG~~ 506 (599)
T 1w6s_A 485 --DLVFYGTLDGYLKARDSDTGDL 506 (599)
T ss_dssp --TEEEEECTTSEEEEEETTTCCE
T ss_pred --CEEEEECCCCeEEEEECCCCCE
Confidence 4777799999999999999873
No 249
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.59 E-value=3.5e-06 Score=68.01 Aligned_cols=176 Identities=12% Similarity=0.122 Sum_probs=107.5
Q ss_pred EEEEeeCC--ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEE-ecCCCEEEEEeEecCCCceeeeeeeeeeec
Q 013578 221 IIASCSEG--TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAA-AFTADVKVWEIVYSKDGLVKAVTSVMQLKG 297 (440)
Q Consensus 221 ~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 297 (440)
++.+.+.+ ..|+.+|+.+++.+..+..... .....+...++.|+.. -.++.+.+||..+.+ .+.++..
T Consensus 33 LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~--------~~~ti~~ 103 (243)
T 3mbr_X 33 LYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDLATLT--------PRARFRY 103 (243)
T ss_dssp EEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTTE--------EEEEEEC
T ss_pred EEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEECCcCc--------EEEEEeC
Confidence 66666664 4899999999999988875433 2223333345555554 458889999975543 4444442
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCC
Q 013578 298 HKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGS 376 (440)
Q Consensus 298 h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~ 376 (440)
... =..++ +++..|+.+..++.|.++|..+...... ++. .........++.+.+. +|++.+.. ...
T Consensus 104 ~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~-------I~V--~~~g~~~~~lNeLe~~-~G~lyanvw~s~ 170 (243)
T 3mbr_X 104 PGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGS-------IKV--TAGGRPLDNLNELEWV-NGELLANVWLTS 170 (243)
T ss_dssp SSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEE-------EEC--EETTEECCCEEEEEEE-TTEEEEEETTTT
T ss_pred CCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEE-------EEE--ccCCcccccceeeEEe-CCEEEEEECCCC
Confidence 222 23444 4677777777788999999987543321 111 1000001123344544 67766655 478
Q ss_pred EEEEEEcCCccchhhhhcc------------ccCCeEEEEecCCCCCCCCCcceEEEEeeC
Q 013578 377 TLQWLSVETGKVLDTAEKA------------HEGEITCMAWAPKTIPMGNQQVSVLATSSV 425 (440)
Q Consensus 377 ~i~i~d~~~~~~~~~~~~~------------h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~ 425 (440)
.|.+.|.++|+.+..+... -....+.|+++|++. ++++||-.
T Consensus 171 ~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~-------~lfVTGK~ 224 (243)
T 3mbr_X 171 RIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD-------RLFVTGKR 224 (243)
T ss_dssp EEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT-------EEEEEETT
T ss_pred eEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCC-------EEEEECCC
Confidence 9999999999987655311 123578999999761 66666644
No 250
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.57 E-value=2.7e-05 Score=74.48 Aligned_cols=277 Identities=6% Similarity=-0.030 Sum_probs=141.5
Q ss_pred EEEEcc-CCCEEEEeeCCC-----------cEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcc
Q 013578 96 GLCFSS-DGKCLATACADG-----------VIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGC 163 (440)
Q Consensus 96 ~l~~s~-dg~~l~t~s~dg-----------~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~ 163 (440)
++++.+ +|+.++.|+.++ .+.+||..+..-.... .....+.....++++..+++.+++++.+..
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~--~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~-- 265 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT--VTVTKHDMFCPGISMDGNGQIVVTGGNDAK-- 265 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE--EEECSCCCSSCEEEECTTSCEEEECSSSTT--
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc--ccCCCCCCccccccCCCCCCEEEeCCCCCC--
Confidence 566777 889999887653 5788988876533222 222223334456788899998888876533
Q ss_pred eEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEee-CC-----ceEEEEeCC
Q 013578 164 SLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCS-EG-----TDISIWHGK 237 (440)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d-----~~i~vwd~~ 237 (440)
.+++++.......... .++. ..| ...+...++++ +++.|+ .+ ..+.+||..
T Consensus 266 ~v~~yd~~t~~W~~~~----~~~~--~R~----------------~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 266 KTSLYDSSSDSWIPGP----DMQV--ARG----------------YQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp CEEEEEGGGTEEEECC----CCSS--CCS----------------SCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETT
T ss_pred ceEEecCcCCceeECC----CCCc--ccc----------------ccceEEecCCe-EEEEeCcccCCcccccceEeCCC
Confidence 5666665443211110 0000 000 01112235677 666666 33 469999998
Q ss_pred CCceeeee-----eCCCCcccEEEecCCCCeEEEEecCCC---------EEEEEeEecCCCceeeeeeeeeeec------
Q 013578 238 TGKLLGNV-----DTNQLKNNMAAISPNGRFLAAAAFTAD---------VKVWEIVYSKDGLVKAVTSVMQLKG------ 297 (440)
Q Consensus 238 ~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~---------i~i~d~~~~~~~~~~~~~~~~~~~~------ 297 (440)
+++-...- ......- ...+..++..++.|+.+|. +..||..... ... .......
T Consensus 323 t~~W~~~~~~~~~p~~~~~~-~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~--w~~---~~~~~~~~~~~~~ 396 (656)
T 1k3i_A 323 SKTWTSLPNAKVNPMLTADK-QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG--DVK---SAGKRQSNRGVAP 396 (656)
T ss_dssp TTEEEEETTSCSGGGCCCCT-TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC--EEE---EEEECEETTEECC
T ss_pred CCcceeCCCccccccccccc-cceeecCCceEEEECCCCcEEEecCccceeeeecCCcc--eee---cCCccccccccCC
Confidence 76543220 0000000 1123356666677766654 4566654322 000 1111100
Q ss_pred cccceEEEEEcC-CCCEEEEEeCCC-----------cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC
Q 013578 298 HKSAVTWLCFAP-NSEQIITASKDG-----------TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS 365 (440)
Q Consensus 298 h~~~v~~~~~~p-~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 365 (440)
....-.++.|.. ++++++.|+.++ .|.+||..+........ ..++ ....-..++..|
T Consensus 397 ~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~---~~mp--------~~R~~~~~~~l~ 465 (656)
T 1k3i_A 397 DAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFAS---NGLY--------FARTFHTSVVLP 465 (656)
T ss_dssp CCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECT---TCCS--------SCCBSCEEEECT
T ss_pred CCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEcc---CCCC--------CCcccCCeEECC
Confidence 011223444433 677788887543 56777776543211000 0000 011122456678
Q ss_pred CCCEEEEec-C-----------CEEEEEEcCCccc--hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeC
Q 013578 366 DGKILAATH-G-----------STLQWLSVETGKV--LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSV 425 (440)
Q Consensus 366 ~g~~l~~~~-~-----------~~i~i~d~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~ 425 (440)
+|++++.|. + ..+.+||..+.+- +..+. .......+..+.|++ ++++.||.
T Consensus 466 ~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~-~~R~~hs~a~ll~dg--------~v~v~GG~ 530 (656)
T 1k3i_A 466 DGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNS-IVRVYHSISLLLPDG--------RVFNGGGG 530 (656)
T ss_dssp TSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCS-SCCCTTEEEEECTTS--------CEEEEECC
T ss_pred CCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCC-CccccccHhhcCCCc--------EEEecCCC
Confidence 999888764 2 4689999877652 22221 111222344566887 88998885
No 251
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.57 E-value=8e-06 Score=76.36 Aligned_cols=55 Identities=13% Similarity=-0.050 Sum_probs=38.4
Q ss_pred CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 375 GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 375 ~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
++.|+.||..+++.+.++. +...+........+ .+++.++.||.|+.||..+++.
T Consensus 443 ~g~l~a~D~~tG~~~W~~~--~~~~~~~~~~~t~g--------g~v~~g~~dg~l~a~D~~tG~~ 497 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKW--EKFAAWGGTLYTKG--------GLVWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp CEEEEEECTTTCCEEEEEE--ESSCCCSBCEEETT--------TEEEEECTTSEEEEEETTTCCE
T ss_pred CCeEEEEECCCCCEEEEec--CCCCccceeEEECC--------CEEEEEcCCCeEEEEECCCCCE
Confidence 4789999999999887764 33333332222222 4677789999999999998863
No 252
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.56 E-value=3.1e-05 Score=75.19 Aligned_cols=65 Identities=14% Similarity=0.199 Sum_probs=43.1
Q ss_pred cccCc-ceeEEEEc-cCCCEEEEeeC-C----CcEEEEecCCC-CCcceeeEEecCCCCCCCceEEEccCCCeEEEEeec
Q 013578 88 KGHGD-SVTGLCFS-SDGKCLATACA-D----GVIRVHKLDDA-SSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHN 159 (440)
Q Consensus 88 ~~H~~-~V~~l~~s-~dg~~l~t~s~-d----g~v~vW~~~~~-~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~ 159 (440)
++|.- .+...+|| |||++||.+.. + .+|+++|+.++ +.... .+. .....++|+||++.|+....+
T Consensus 169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~------~~~~~~~WspDg~~l~y~~~d 241 (751)
T 2xe4_A 169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVS------GTNGEIVWGPDHTSLFYVTKD 241 (751)
T ss_dssp TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEE------EECSCCEECSSTTEEEEEEEC
T ss_pred cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-ccc------CceeeEEEecCCCEEEEEEEC
Confidence 35554 78899999 99998885532 2 35999999887 42111 111 124578899999887776543
No 253
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.52 E-value=0.00012 Score=59.89 Aligned_cols=126 Identities=8% Similarity=0.027 Sum_probs=73.6
Q ss_pred CCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee--e--eccccceEEEEEcCCCC-EEEEEeCCCcE
Q 013578 249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ--L--KGHKSAVTWLCFAPNSE-QIITASKDGTL 323 (440)
Q Consensus 249 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~--~~h~~~v~~~~~~p~~~-~l~s~~~dg~i 323 (440)
......++|+|+++.|+++.+.....+|.+....... ....... + ..+...+.+++++|... +++....+..+
T Consensus 120 N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~--~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L 197 (255)
T 3qqz_A 120 NCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSN--ELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRAL 197 (255)
T ss_dssp SSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSS--CCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred cCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCC--ceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeE
Confidence 3446789999999888888887777888876211110 0001100 0 11234578999999654 45555567778
Q ss_pred EEEecCccccccCCCCcccccccc--ccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcC
Q 013578 324 RVWNINVRYHLDEDPKTLKVLPIP--LLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVE 384 (440)
Q Consensus 324 ~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~ 384 (440)
..+|.... .+ ..+.+. ..........-..++|.++|.+.+++..+.++.|...
T Consensus 198 ~~~d~~g~-~~-------~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 198 QEVTLVGE-VI-------GEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp EEECTTCC-EE-------EEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC-
T ss_pred EEEcCCCC-EE-------EEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEec
Confidence 88887643 11 111111 0000011123446999999998888877888887654
No 254
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.52 E-value=5.5e-05 Score=70.80 Aligned_cols=54 Identities=19% Similarity=0.074 Sum_probs=37.1
Q ss_pred CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 375 GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 375 ~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
++.|..||..+|+.+.+.. +..++..-.....+ .+++.|+.||.++.||.++++
T Consensus 465 ~G~l~A~D~~tG~~~W~~~--~~~~~~~g~~~tag--------glvf~g~~dg~l~A~D~~tG~ 518 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHK--EHLPLWAGVLATAG--------NLVFTGTGDGYFKAFDAKSGK 518 (582)
T ss_dssp SEEEEEECTTTCCEEEEEE--ESSCCCSCCEEETT--------TEEEEECTTSEEEEEETTTCC
T ss_pred cceEEEEECCCCCEEEEec--CCCCCcccceEeCC--------CEEEEECCCCcEEEEECCCCC
Confidence 4789999999999887663 22222211111122 478889999999999999887
No 255
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.51 E-value=4.8e-05 Score=62.36 Aligned_cols=207 Identities=12% Similarity=0.157 Sum_probs=121.9
Q ss_pred cccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCC-CCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeee
Q 013578 212 TYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN-QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVT 290 (440)
Q Consensus 212 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 290 (440)
+.+.|++..++++...++.|...|.. ++.++.+... ....-.+++.+++.++++.-.++.+.++++..... .....
T Consensus 32 la~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~--i~~~~ 108 (255)
T 3qqz_A 32 LTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE--VKILK 108 (255)
T ss_dssp EEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC--EEEEE
T ss_pred eEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe--eeeee
Confidence 34467766577777788999999998 8888877532 24567788888887666655667888888754331 11111
Q ss_pred eee-ee--eccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCC
Q 013578 291 SVM-QL--KGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDG 367 (440)
Q Consensus 291 ~~~-~~--~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 367 (440)
... .+ .........|+|+|.+..|+++.......+|.++. .... ........+..........+..+++.|..
T Consensus 109 ~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g--~~~~--~~l~i~~~~~~~~~~~~~d~S~l~~dp~t 184 (255)
T 3qqz_A 109 KIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNG--LLSS--NELHISKDKALQRQFTLDDVSGAEFNQQK 184 (255)
T ss_dssp EEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEES--TTCS--SCCEEEECHHHHHTCCSSCCCEEEEETTT
T ss_pred eeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcc--cccC--CceeeecchhhccccccCCceeEEEcCCC
Confidence 111 11 12345578999999998887777666666776651 1000 01111110000011112346789999875
Q ss_pred C-EEEEec-CCEEEEEEcCCccchhhh--hccc------cCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 368 K-ILAATH-GSTLQWLSVETGKVLDTA--EKAH------EGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 368 ~-~l~~~~-~~~i~i~d~~~~~~~~~~--~~~h------~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
. +++.++ .+.|..+|.. |+.+..+ ..+. -.....|+|.++| +++++ ++-+.++++.-.
T Consensus 185 g~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G--------~lyIv-sE~n~~y~f~~~ 252 (255)
T 3qqz_A 185 NTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASG--------NIYIV-SEPNRFYRFTPQ 252 (255)
T ss_dssp TEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTC--------CEEEE-ETTTEEEEEEC-
T ss_pred CeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCC--------CEEEE-cCCceEEEEEec
Confidence 4 444444 6788888865 4443322 1111 1257899999998 65554 777766666543
No 256
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.51 E-value=2.2e-05 Score=63.92 Aligned_cols=140 Identities=6% Similarity=-0.121 Sum_probs=84.0
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee--cc
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK--GH 298 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~h 298 (440)
+.+..-.++.+.+||..+.+.+.++..... -..+ .++++.|+.+..+++|.++|..+.+ .+..+. .+
T Consensus 108 Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e-GwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~--------v~~~I~V~~~ 176 (268)
T 3nok_A 108 LYQLTWTEGLLFTWSGMPPQRERTTRYSGE-GWGL--CYWNGKLVRSDGGTMLTFHEPDGFA--------LVGAVQVKLR 176 (268)
T ss_dssp EEEEESSSCEEEEEETTTTEEEEEEECSSC-CCCE--EEETTEEEEECSSSEEEEECTTTCC--------EEEEEECEET
T ss_pred EEEEEccCCEEEEEECCcCcEEEEEeCCCc-eeEE--ecCCCEEEEECCCCEEEEEcCCCCe--------EEEEEEeCCC
Confidence 444555788899999999999999876432 2333 3678888888778889999865443 222221 12
Q ss_pred c---cceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEe
Q 013578 299 K---SAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAAT 373 (440)
Q Consensus 299 ~---~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~ 373 (440)
. ..++.+.|. +|+.++..-.+..|.+.|.++++.+....-.. ..+...........-.+.+|++|+++ ++++|
T Consensus 177 g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~-L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 177 GQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASA-LTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHH-HHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCC-CcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 1 245677776 67655555567899999998876543211100 00000000111123367899999866 44555
No 257
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.50 E-value=0.0004 Score=60.59 Aligned_cols=184 Identities=9% Similarity=-0.072 Sum_probs=104.9
Q ss_pred EEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEE-ecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578 222 IASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAA-AFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300 (440)
Q Consensus 222 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~ 300 (440)
+++-...+.|+.+++........+.........+++++.+..|+.. ...+.|.+.++.... ....+.....
T Consensus 88 y~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--------~~~l~~~~l~ 159 (349)
T 3v64_C 88 FWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--------RKVLLWQSLE 159 (349)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS--------CEEEECTTCS
T ss_pred EEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc--------eEEEEeCCCC
Confidence 3333445667777776554333333333445788999865555544 456778888764322 1111222334
Q ss_pred ceEEEEEcCCCCEEE-EEeCC-CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CC
Q 013578 301 AVTWLCFAPNSEQII-TASKD-GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GS 376 (440)
Q Consensus 301 ~v~~~~~~p~~~~l~-s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~ 376 (440)
....++++|.+..|+ +-..+ +.|..+++...... .+ . .........++++|++..|..++ .+
T Consensus 160 ~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~--------~~----~--~~~~~~PnGla~d~~~~~lY~aD~~~~ 225 (349)
T 3v64_C 160 KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR--------II----A--DTHLFWPNGLTIDYAGRRMYWVDAKHH 225 (349)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--------ES----C--CSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE--------EE----E--ECCCCCcceEEEeCCCCEEEEEECCCC
Confidence 578999999665554 44444 77888887642110 00 0 00112245799998777666554 67
Q ss_pred EEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 377 TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 377 ~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
.|..++.........+ .........+++..+ .++++-...+.|..++..++
T Consensus 226 ~I~~~~~dG~~~~~~~-~~~~~~P~giav~~~---------~ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 226 VIERANLDGSHRKAVI-SQGLPHPFAITVFED---------SLYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp EEEEEETTSCSCEEEE-CSSCSSEEEEEEETT---------EEEEEETTTTEEEEEETTTC
T ss_pred EEEEEeCCCCceEEEE-eCCCCCceEEEEECC---------EEEEecCCCCeEEEEEccCC
Confidence 8999998653322222 223445677887433 56666666788888775444
No 258
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.44 E-value=0.00012 Score=62.66 Aligned_cols=92 Identities=12% Similarity=0.138 Sum_probs=55.4
Q ss_pred eEEEEEcCCCCEEEEE-eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEE
Q 013578 302 VTWLCFAPNSEQIITA-SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQ 379 (440)
Q Consensus 302 v~~~~~~p~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~ 379 (440)
...+ +|++++|+.+ ...+.|..+++.....+ .....+. .. .....++++++|+++++.. .+.|.
T Consensus 171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~----~~~~~~~----~~----~~P~gi~vd~dG~l~va~~~~~~V~ 236 (306)
T 2p4o_A 171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP----GEPEIFV----EQ----TNIDDFAFDVEGNLYGATHIYNSVV 236 (306)
T ss_dssp EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCB----CCCEEEE----ES----CCCSSEEEBTTCCEEEECBTTCCEE
T ss_pred CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC----CccEEEe----cc----CCCCCeEECCCCCEEEEeCCCCeEE
Confidence 4555 7888766544 46778999998741111 0011100 00 1234699999998766644 68899
Q ss_pred EEEcCCccc--hhhhhccccCCeEEEEec---CCC
Q 013578 380 WLSVETGKV--LDTAEKAHEGEITCMAWA---PKT 409 (440)
Q Consensus 380 i~d~~~~~~--~~~~~~~h~~~v~~v~~~---~~~ 409 (440)
+++.. ++. +..+. ......++++|. |++
T Consensus 237 ~~~~~-G~~~~~~~~~-~~~~~p~~~a~~g~~~d~ 269 (306)
T 2p4o_A 237 RIAPD-RSTTIIAQAE-QGVIGSTAVAFGQTEGDC 269 (306)
T ss_dssp EECTT-CCEEEEECGG-GTCTTEEEEEECCSTTTT
T ss_pred EECCC-CCEEEEeecc-cccCCceEEEEecccCCC
Confidence 99975 654 22332 233568999998 775
No 259
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.44 E-value=5.7e-05 Score=60.95 Aligned_cols=141 Identities=10% Similarity=-0.032 Sum_probs=83.6
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeec--c
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKG--H 298 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--h 298 (440)
+....-.++.+.+||..+.+.+.++...... . .+.++++.|+.+..+++|.++|..+.+ .+..+.- +
T Consensus 77 ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-w--glt~dg~~L~vSdgs~~l~~iDp~t~~--------~~~~I~V~~~ 145 (243)
T 3mbr_X 77 LIQLTWRNHEGFVYDLATLTPRARFRYPGEG-W--ALTSDDSHLYMSDGTAVIRKLDPDTLQ--------QVGSIKVTAG 145 (243)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEEECSSCC-C--EEEECSSCEEEECSSSEEEEECTTTCC--------EEEEEECEET
T ss_pred EEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-e--EEeeCCCEEEEECCCCeEEEEeCCCCe--------EEEEEEEccC
Confidence 4444566888999999999999998764422 3 344678888888788889999875443 2222221 1
Q ss_pred c---cceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec
Q 013578 299 K---SAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH 374 (440)
Q Consensus 299 ~---~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 374 (440)
. ..++.+.+. +|+.++..-.+..|.+.|.++++.+....-.. ..+...........-.+.++++|+++.|.+..
T Consensus 146 g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~-l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 146 GRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQA-LVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGG-GSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred CcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCc-CccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 1 345667765 66655555467799999998876542211000 00000000011122467899999876555443
No 260
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.43 E-value=0.00033 Score=68.78 Aligned_cols=195 Identities=11% Similarity=0.060 Sum_probs=116.0
Q ss_pred EEEeeCCceEEEEeCCCCceeeeeeC-------CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeee--
Q 013578 222 IASCSEGTDISIWHGKTGKLLGNVDT-------NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSV-- 292 (440)
Q Consensus 222 l~s~~~d~~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-- 292 (440)
+..++.++-|..||..+++....... ....|.++...++|.+. +|+.+ -|.+||..... .......
T Consensus 228 lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~---~~~~~~~~~ 302 (795)
T 4a2l_A 228 IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEGTDS---FASYSSNPV 302 (795)
T ss_dssp EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEETTTTE---EEEECCCTT
T ss_pred EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCCCCe---EEEEecCCC
Confidence 34444443388898876654322211 13458888888888754 45555 47888753221 1000000
Q ss_pred eeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE
Q 013578 293 MQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA 372 (440)
Q Consensus 293 ~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 372 (440)
....-....|.++...++|. |..|+.++-|..|+..+.... .+........-....|.++...++|.+.++
T Consensus 303 ~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~--------~~~~~~~~~~l~~~~V~~i~~d~~g~lWiG 373 (795)
T 4a2l_A 303 ENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK--------NIRNIPYKNSLSDNVVSCIVEDKDKNLWIG 373 (795)
T ss_dssp STTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE--------EECCCTTSSSCSCSSEEEEEECTTSCEEEE
T ss_pred CCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce--------EEcCCCCCCCCCCCeeEEEEECCCCCEEEE
Confidence 00011235799999998887 566777778999987643211 000000001112334888999999998887
Q ss_pred ecCCEEEEEEcCCccchhhhhc-------cccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 373 THGSTLQWLSVETGKVLDTAEK-------AHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 373 ~~~~~i~i~d~~~~~~~~~~~~-------~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
..++.|..|+..+++....... -....|.++...+++ .+|..|+.++-|.+|+..+++
T Consensus 374 t~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g--------~~lWigt~~~Gl~~~d~~~~~ 438 (795)
T 4a2l_A 374 TNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK--------SLVYIGTHAGGLSILHRNSGQ 438 (795)
T ss_dssp ESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT--------TEEEEEETTTEEEEEETTTCC
T ss_pred ECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC--------CEEEEEeCcCceeEEeCCCCc
Confidence 7788899999887754322110 123578999988886 536777777778888877653
No 261
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.42 E-value=0.0014 Score=64.35 Aligned_cols=291 Identities=8% Similarity=0.026 Sum_probs=158.2
Q ss_pred CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEec-----CCCCCCCceEEEccCCCeEEEEeecCCcceE
Q 013578 91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRIN-----LPPGGPPTAVAFADNATSIVVATHNLSGCSL 165 (440)
Q Consensus 91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~-----~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~ 165 (440)
...|.++...++|.+.+ |..+| |.+|+..+.... ..... .-....|.++...++|..- +++.+ ..+
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~---~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~---~Gl 332 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFND-LNIYHEGTDSFA---SYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYF---GGL 332 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESSC-EEEEETTTTEEE---EECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESS---SCE
T ss_pred CCeEEEEEEcCCCCEEE-EeCCh-hheEcCCCCeEE---EEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECC---CCe
Confidence 35799999998887555 44454 888887654311 11100 1123567888888877644 34433 123
Q ss_pred Eeecccccccc-ccc-cccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee
Q 013578 166 YMYGEEKAIST-NEG-KQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG 243 (440)
Q Consensus 166 ~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 243 (440)
..++....... ... .....+. .. .+. +++...+|. +..|+.++-|..|+..+++...
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~l~------------~~-~V~------~i~~d~~g~--lWiGt~~~Gl~~~~~~~~~~~~ 391 (795)
T 4a2l_A 333 NYYHPIRNRFKNIRNIPYKNSLS------------DN-VVS------CIVEDKDKN--LWIGTNDGGLNLYNPITQRFTS 391 (795)
T ss_dssp EEECGGGGSSEEECCCTTSSSCS------------CS-SEE------EEEECTTSC--EEEEESSSCEEEECTTTCCEEE
T ss_pred EEeCCCcccceEEcCCCCCCCCC------------CC-eeE------EEEECCCCC--EEEEECCCCeEEEcCCCCcEEE
Confidence 33332221100 000 0000000 00 011 111234554 5557777669999988765433
Q ss_pred eeeC--------CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEE
Q 013578 244 NVDT--------NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQII 315 (440)
Q Consensus 244 ~~~~--------~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 315 (440)
.... ....|.++...++|+.|.+|+.++-|..||...+. ....... .-......|.++...++|.+.+
T Consensus 392 ~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~---~~~~~~~-~~~l~~~~v~~i~~d~~g~lwi 467 (795)
T 4a2l_A 392 YTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ---VENFNQR-NSQLVNENVYAILPDGEGNLWL 467 (795)
T ss_dssp ECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC---EEEECTT-TSCCSCSCEEEEEECSSSCEEE
T ss_pred EecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc---EEEeecC-CCCcCCCeeEEEEECCCCCEEE
Confidence 2211 23467888888888857778877778888864332 1111000 0001345789999988887544
Q ss_pred EEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhh---
Q 013578 316 TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTA--- 392 (440)
Q Consensus 316 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~--- 392 (440)
|+. +-+.+||..++..... ........-....|.++...++|.+.+++. +.|..||..+++. ...
T Consensus 468 -gt~-~Gl~~~~~~~~~~~~~--------~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~-~~~~~~ 535 (795)
T 4a2l_A 468 -GTL-SALVRFNPEQRSFTTI--------EKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI-QKASIL 535 (795)
T ss_dssp -EES-SCEEEEETTTTEEEEC--------CBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE-EECCCS
T ss_pred -Eec-CceeEEeCCCCeEEEc--------cccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE-EEecCC
Confidence 444 4588898875432110 000000011124578899999999887766 6688888877664 110
Q ss_pred --hccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 393 --EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 393 --~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
.......|.++...+++ .+.+ |+.. -+..|+..+.
T Consensus 536 ~~~~l~~~~i~~i~~d~~g--------~lWi-gT~~-Gl~~~d~~~~ 572 (795)
T 4a2l_A 536 PVSNVTKLFTNCIYEASNG--------IIWV-GTRE-GFYCFNEKDK 572 (795)
T ss_dssp CSCGGGGSCEEEEEECTTS--------CEEE-EESS-CEEEEETTTT
T ss_pred CCCCCCCCeeEEEEECCCC--------CEEE-EeCC-CceeECCCCC
Confidence 01234579999998887 4444 4444 4777776543
No 262
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.40 E-value=0.00048 Score=61.91 Aligned_cols=157 Identities=8% Similarity=0.041 Sum_probs=93.1
Q ss_pred ceeEEEEcc-CCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCc--ceEEeec
Q 013578 93 SVTGLCFSS-DGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSG--CSLYMYG 169 (440)
Q Consensus 93 ~V~~l~~s~-dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~--~~~~~~~ 169 (440)
....|+++| ++..|..+...+.|+.+|+...... ...........++|++++++|+++...... ..+....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~------~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~ 211 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS------TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT 211 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE------EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE------EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe
Confidence 567899998 4556666655578888888764311 112234668899999999977776643211 1122222
Q ss_pred cccccccccccccCCCCCCceeecccccccceeEEEeecccccccCC-CCCeEEEEeeCCceEEEEeCCCCceeeeeeC-
Q 013578 170 EEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA-DGSTIIASCSEGTDISIWHGKTGKLLGNVDT- 247 (440)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~- 247 (440)
...... ....+.....+..+.+.+ ++. ++++-..++.|..++...+........
T Consensus 212 ~~g~~~-----------------------~~~~l~~~~~p~giavdp~~g~-lyv~d~~~~~V~~~~~~~~~~~~~~~~~ 267 (430)
T 3tc9_A 212 RESGFK-----------------------VITELTKGQNCNGAETHPINGE-LYFNSWNAGQVFRYDFTTQETTPLFTIQ 267 (430)
T ss_dssp GGGTSC-----------------------SEEEEEECSSCCCEEECTTTCC-EEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred CCCcee-----------------------eeeeeccCCCceEEEEeCCCCE-EEEEECCCCEEEEEECCCCcEEEEEEcC
Confidence 111100 001111223344555677 454 666666778899999886654222222
Q ss_pred CCCcccEEEecCCCCeEEEEe-cCCCEEEEEeE
Q 013578 248 NQLKNNMAAISPNGRFLAAAA-FTADVKVWEIV 279 (440)
Q Consensus 248 ~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~ 279 (440)
.......++++|+|++|+++. ..+.|..++..
T Consensus 268 ~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 268 DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 123457899999999666654 56778888865
No 263
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.37 E-value=0.001 Score=59.78 Aligned_cols=203 Identities=15% Similarity=0.112 Sum_probs=112.9
Q ss_pred cceeEEEEccC--CCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCC--cceEEe
Q 013578 92 DSVTGLCFSSD--GKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLS--GCSLYM 167 (440)
Q Consensus 92 ~~V~~l~~s~d--g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~--~~~~~~ 167 (440)
.....|+|+|+ +..|..+...+.|+.++..++.. .........+..++|+++++ |+++..... ...+..
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v------~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~ 211 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYV------DIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYL 211 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEE------EEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEE
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEE------EEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEE
Confidence 35679999985 34455554448899999865532 12223345688999999999 554443210 111211
Q ss_pred eccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCC-CCCeEEEEeeCCceEEEEeCCCCceeeee-
Q 013578 168 YGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTA-DGSTIIASCSEGTDISIWHGKTGKLLGNV- 245 (440)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~~~d~~i~vwd~~~~~~~~~~- 245 (440)
....... ...........+..+.+.+ ++. ++++-..++.|+.+|..++.....+
T Consensus 212 ~~~~~~~-----------------------~~~~~~~~~~~P~giavd~~~G~-lyv~d~~~~~V~~~d~~~g~~~~~~~ 267 (433)
T 4hw6_A 212 FTRASGF-----------------------TERLSLCNARGAKTCAVHPQNGK-IYYTRYHHAMISSYDPATGTLTEEEV 267 (433)
T ss_dssp ECGGGTT-----------------------CCEEEEEECSSBCCCEECTTTCC-EEECBTTCSEEEEECTTTCCEEEEEE
T ss_pred EECCCCe-----------------------eccccccccCCCCEEEEeCCCCe-EEEEECCCCEEEEEECCCCeEEEEEe
Confidence 1111100 0001112233345556677 454 6666667788999999877662222
Q ss_pred eCC-CCcccEEEecCCCCeEEEEec-CCCEEEEEeEecCCCceeeeeeeeeeec---------------cccceEEEEE-
Q 013578 246 DTN-QLKNNMAAISPNGRFLAAAAF-TADVKVWEIVYSKDGLVKAVTSVMQLKG---------------HKSAVTWLCF- 307 (440)
Q Consensus 246 ~~~-~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~---------------h~~~v~~~~~- 307 (440)
... ......++++|++++|+++.. .+.|+.+++..... ... ....+.+ .-.....+++
T Consensus 268 ~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~-~~~---~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~ 343 (433)
T 4hw6_A 268 MMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETG-KLA---VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFV 343 (433)
T ss_dssp ECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTC-CBC---CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEE
T ss_pred ccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCc-ccC---cEEEEEecCCCCccCCCcccceEEcCCccEEEE
Confidence 211 112236999999996666654 56788877642110 000 0001111 1123567999
Q ss_pred --------cCCCCEEEEEeCCCcEEEEecC
Q 013578 308 --------APNSEQIITASKDGTLRVWNIN 329 (440)
Q Consensus 308 --------~p~~~~l~s~~~dg~i~iwd~~ 329 (440)
.+++.++++-...+.|+.++..
T Consensus 344 ~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~ 373 (433)
T 4hw6_A 344 KNEAYAGEEDEYDFYFCDRDSHTVRVLTPE 373 (433)
T ss_dssp ECGGGTTSSCCEEEEEEETTTTEEEEECTT
T ss_pred ccccccccCCCCcEEEEECCCCEEEEECCC
Confidence 7777777776777889998853
No 264
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.36 E-value=0.00045 Score=61.17 Aligned_cols=185 Identities=9% Similarity=-0.066 Sum_probs=105.1
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeeeeccc
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQLKGHK 299 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~ 299 (440)
++++-...+.|+.+++........+.........+++++.+..|+... ..+.|.+.++.... ....+....
T Consensus 130 ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~--------~~~l~~~~l 201 (386)
T 3v65_B 130 VFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--------RKVLLWQSL 201 (386)
T ss_dssp EEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS--------CEEEECSSC
T ss_pred EEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc--------eEEeecCCC
Confidence 333444456677777765543333333333456788988655555544 45667776653221 111122233
Q ss_pred cceEEEEEcCCCCEEEEEe-CC-CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--C
Q 013578 300 SAVTWLCFAPNSEQIITAS-KD-GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--G 375 (440)
Q Consensus 300 ~~v~~~~~~p~~~~l~s~~-~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~ 375 (440)
.....++++|.+..|+... .+ +.|..+++...... .+ .. ........++++|++..|..++ .
T Consensus 202 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~--------~~----~~--~~~~~PnGlavd~~~~~lY~aD~~~ 267 (386)
T 3v65_B 202 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR--------II----AD--THLFWPNGLTIDYAGRRMYWVDAKH 267 (386)
T ss_dssp SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--------EE----EC--SSCSCEEEEEEEGGGTEEEEEETTT
T ss_pred CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE--------EE----EE--CCCCCeeeEEEeCCCCEEEEEECCC
Confidence 5578999999766555444 34 67888887642110 00 00 0111245799998777666544 6
Q ss_pred CEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 376 STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 376 ~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
+.|..++.........+ .........+++..+ .++++-...+.|..++..++
T Consensus 268 ~~I~~~d~dG~~~~~~~-~~~~~~P~giav~~~---------~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 268 HVIERANLDGSHRKAVI-SQGLPHPFAITVFED---------SLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp TEEEEECTTSCSCEEEE-CSSCSSEEEEEEETT---------EEEEEETTTTEEEEEETTTC
T ss_pred CEEEEEeCCCCeeEEEE-ECCCCCceEEEEECC---------EEEEeeCCCCeEEEEECCCC
Confidence 78999997643322222 223446678888443 57777777888888885444
No 265
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.33 E-value=3.6e-05 Score=74.74 Aligned_cols=193 Identities=9% Similarity=0.055 Sum_probs=104.3
Q ss_pred ccC-CCCCeEEEEeeCC----ceEEEEeCCCC-ceeee-eeCCCCcccEEEecCCCCeEEEEecCC-----CEEEEEeEe
Q 013578 213 YGT-ADGSTIIASCSEG----TDISIWHGKTG-KLLGN-VDTNQLKNNMAAISPNGRFLAAAAFTA-----DVKVWEIVY 280 (440)
Q Consensus 213 ~~~-~~~~~~l~s~~~d----~~i~vwd~~~~-~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~ 280 (440)
.++ |||+.++++...+ ..|+++|+.++ +.+.. +. .....++|+|||+.|+....+. .|+++++..
T Consensus 180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt 256 (751)
T 2xe4_A 180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGK 256 (751)
T ss_dssp EECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTS
T ss_pred EecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCC
Confidence 348 8999666655443 35999999988 63321 21 1245689999999888877652 355555533
Q ss_pred cCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC---CCcEEEEecCccccccCCCCccccccccccCCCCCeee
Q 013578 281 SKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK---DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQ 357 (440)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (440)
+.. ....+... .......++.|+|||++|+..+. ...|.++|+.++... . ....+ .. .....
T Consensus 257 ~~~----~~~lv~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~---~-~~~~l----~~--~~~~~ 321 (751)
T 2xe4_A 257 LQS----EDVCLYEE-HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAH---N-TLEIV----RP--REKGV 321 (751)
T ss_dssp CGG----GCEEEEEC-CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTC---C-CEEES----SC--CCTTC
T ss_pred Cch----hcEEEEec-CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCC---c-eeEEe----ec--CCCCc
Confidence 220 00011111 22345678899999998876553 346788888753100 0 00000 00 11111
Q ss_pred eeeEEeCCCCCEEEEec-C----CEEEEEEcCCccchhh-hhccccC--CeEEEEecCCCCCCCCCcceEEEEeeCCCeE
Q 013578 358 YDRLSLSSDGKILAATH-G----STLQWLSVETGKVLDT-AEKAHEG--EITCMAWAPKTIPMGNQQVSVLATSSVDKKV 429 (440)
Q Consensus 358 v~~~~~s~~g~~l~~~~-~----~~i~i~d~~~~~~~~~-~~~~h~~--~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i 429 (440)
...+.|+.++.+++.+. + ..|..+++.++..... +. .|.. .+..+.+..+ .++++...|+..
T Consensus 322 ~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li-~~~~~~~l~~~~~~~~---------~lv~~~~~~g~~ 391 (751)
T 2xe4_A 322 RYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLV-DHSEDVFMESIAVRSN---------YLVVAGRRAGLT 391 (751)
T ss_dssp CEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEE-CCCSSEEEEEEEECSS---------EEEEEEEETTEE
T ss_pred eEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEE-CCCCCcEEEEEEEECC---------EEEEEEEeCCEE
Confidence 22344433444444443 2 3778888765322222 21 2333 4566666643 677888888876
Q ss_pred EEEe
Q 013578 430 KLWL 433 (440)
Q Consensus 430 ~vw~ 433 (440)
++|-
T Consensus 392 ~l~~ 395 (751)
T 2xe4_A 392 RIWT 395 (751)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5553
No 266
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.28 E-value=0.0015 Score=56.36 Aligned_cols=153 Identities=10% Similarity=0.133 Sum_probs=81.4
Q ss_pred ccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q 013578 252 NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVR 331 (440)
Q Consensus 252 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~ 331 (440)
+..+.+.+++..++++ .+|.| |....+. ..+..+ ..++...+..+++.|++.+++.+...+..+-+|-. +
T Consensus 124 ~~~i~~~~~~~~~~~~-~~g~v--~~S~DgG----~tW~~~--~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G 193 (327)
T 2xbg_A 124 PRLIKALGNGSAEMIT-NVGAI--YRTKDSG----KNWQAL--VQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-Q 193 (327)
T ss_dssp EEEEEEEETTEEEEEE-TTCCE--EEESSTT----SSEEEE--ECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT-C
T ss_pred eEEEEEECCCCEEEEe-CCccE--EEEcCCC----CCCEEe--ecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC-C
Confidence 4456666666655554 45543 3222111 112122 12345578899999988877666443333333321 0
Q ss_pred ccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhc---cccCCeEEEEecCC
Q 013578 332 YHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEK---AHEGEITCMAWAPK 408 (440)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~---~h~~~v~~v~~~~~ 408 (440)
....... ......+..+++.+++++++++.+|.+++.+...|+.-..+.. .+...+.++.+.++
T Consensus 194 -------~tW~~~~------~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~ 260 (327)
T 2xbg_A 194 -------TAWEPHN------RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTP 260 (327)
T ss_dssp -------SSCEEEE------CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSS
T ss_pred -------CceeECC------CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCC
Confidence 0111110 0112346678899999999888888888765333433222211 13346889999887
Q ss_pred CCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 409 TIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 409 ~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
+ .+++. +.+|.+ .+..+.+
T Consensus 261 ~--------~~~~~-g~~g~i-~~S~DgG 279 (327)
T 2xbg_A 261 N--------EVWLA-GGAGAL-LCSQDGG 279 (327)
T ss_dssp S--------CEEEE-ESTTCE-EEESSTT
T ss_pred C--------EEEEE-eCCCeE-EEeCCCC
Confidence 5 55554 457766 3444433
No 267
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.25 E-value=0.0017 Score=55.77 Aligned_cols=181 Identities=9% Similarity=-0.073 Sum_probs=100.6
Q ss_pred eCCceEEEEeCCC----CceeeeeeCCCCcccEEEecCCCCeEEEE-ecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578 226 SEGTDISIWHGKT----GKLLGNVDTNQLKNNMAAISPNGRFLAAA-AFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300 (440)
Q Consensus 226 ~~d~~i~vwd~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~ 300 (440)
...+.|..+++.. ......+.........+++++.+..|+.. ..++.|.++++.... ..........
T Consensus 49 ~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~--------~~~~~~~~~~ 120 (316)
T 1ijq_A 49 LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--------RKTLFRENGS 120 (316)
T ss_dssp TTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS--------EEEEEECTTC
T ss_pred CCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc--------eEEEEECCCC
Confidence 3345566666554 11112222222345788998755555544 557788888864221 1111222234
Q ss_pred ceEEEEEcCCCCEEEEEeC-C-CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CC
Q 013578 301 AVTWLCFAPNSEQIITASK-D-GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GS 376 (440)
Q Consensus 301 ~v~~~~~~p~~~~l~s~~~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~ 376 (440)
....++++|.+..|+.+.. . +.|...++..... ..+ .. ........+++++++..|..++ .+
T Consensus 121 ~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~--------~~~----~~--~~~~~P~gla~d~~~~~lY~~D~~~~ 186 (316)
T 1ijq_A 121 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--------YSL----VT--ENIQWPNGITLDLLSGRLYWVDSKLH 186 (316)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE--------EEE----EC--SSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe--------EEE----EE--CCCCCceEEEEeccCCEEEEEECCCC
Confidence 6789999996665554443 3 6788888753211 000 00 0112345799999877666554 57
Q ss_pred EEEEEEcCCccchhhhhc--cccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 377 TLQWLSVETGKVLDTAEK--AHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 377 ~i~i~d~~~~~~~~~~~~--~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
.|..+|..... ...+.. ........+++..+ .++++-...+.|..++..+++
T Consensus 187 ~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~~~---------~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 187 SISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED---------KVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EEEEEETTSCS-CEEEEECTTTTSSEEEEEEETT---------EEEEEETTTTEEEEEETTTCC
T ss_pred eEEEEecCCCc-eEEEeecCCccCCcEEEEEECC---------EEEEEECCCCeEEEEeCCCCc
Confidence 99999987432 222211 12235677777543 577777778889888876554
No 268
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.24 E-value=0.00016 Score=62.50 Aligned_cols=194 Identities=8% Similarity=-0.024 Sum_probs=108.7
Q ss_pred ccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeC--------------------CCCcccEEEecCCCCeEEEEe
Q 013578 209 ASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDT--------------------NQLKNNMAAISPNGRFLAAAA 268 (440)
Q Consensus 209 ~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--------------------~~~~v~~~~~s~~~~~l~~~~ 268 (440)
+..+.+.+++. +++++..++.|..|+..+++.. .+.. ....+..+++++++..|+++.
T Consensus 21 p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 21 PNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp CCCEECCTTCS-SEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred ceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 33444466766 5777778889999998765432 2211 012357789997333455555
Q ss_pred cCCCEEEEEeEecCCCceeeeeeeeeeec-cccceEEEEEcC-CCCEEEEEeC-----------------CCcEEEEecC
Q 013578 269 FTADVKVWEIVYSKDGLVKAVTSVMQLKG-HKSAVTWLCFAP-NSEQIITASK-----------------DGTLRVWNIN 329 (440)
Q Consensus 269 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p-~~~~l~s~~~-----------------dg~i~iwd~~ 329 (440)
..+.|..+|...+. .... .....+ .......+++.| +|++.++-.. ++.|..||..
T Consensus 99 ~~~~i~~~d~~~g~---~~~~--~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 173 (322)
T 2fp8_A 99 CYYHLSVVGSEGGH---ATQL--ATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS 173 (322)
T ss_dssp TTTEEEEECTTCEE---CEEE--ESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred CCCCEEEEeCCCCE---EEEe--cccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence 55557777653221 0100 111111 113467899999 8986665432 3567778775
Q ss_pred ccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcCCccc--hhhhhccccCCeEEEEe
Q 013578 330 VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSVETGKV--LDTAEKAHEGEITCMAW 405 (440)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~~~~~--~~~~~~~h~~~v~~v~~ 405 (440)
++... .+.. .......++++++|++|..+. .+.|++|+...... ...+. ...+ ...+++
T Consensus 174 ~~~~~--------~~~~-------~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~-~~~g-P~gi~~ 236 (322)
T 2fp8_A 174 TKETT--------LLLK-------ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-KIPN-PGNIKR 236 (322)
T ss_dssp TTEEE--------EEEE-------EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE-ECSS-EEEEEE
T ss_pred CCEEE--------Eecc-------CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE-eCCC-CCCeEE
Confidence 43211 0000 001134689999998666553 68999999875321 11111 1123 778899
Q ss_pred cCCCCCCCCCcceEEEEeeC----------CCeEEEEeC
Q 013578 406 APKTIPMGNQQVSVLATSSV----------DKKVKLWLA 434 (440)
Q Consensus 406 ~~~~~~~~~~~~~~l~t~~~----------Dg~i~vw~~ 434 (440)
.+++ +++++... .+.|..++.
T Consensus 237 d~~G--------~l~va~~~~~~~~~~~~~~~~v~~~d~ 267 (322)
T 2fp8_A 237 NADG--------HFWVSSSEELDGNMHGRVDPKGIKFDE 267 (322)
T ss_dssp CTTS--------CEEEEEEEETTSSTTSCEEEEEEEECT
T ss_pred CCCC--------CEEEEecCcccccccCCCccEEEEECC
Confidence 9987 66665543 355666654
No 269
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.18 E-value=0.0029 Score=61.96 Aligned_cols=302 Identities=9% Similarity=0.006 Sum_probs=151.6
Q ss_pred cceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEec--CC---CCCCCceEEEcc--CCCeEEEEeecCCcce
Q 013578 92 DSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRIN--LP---PGGPPTAVAFAD--NATSIVVATHNLSGCS 164 (440)
Q Consensus 92 ~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~--~~---~~~~v~~v~~~~--~~~~l~~~~~~~~~~~ 164 (440)
..|.+|...++|..|-.|..++-+..||..+..-. ..... .. ....|.++.... ++. +.+++.. ..
T Consensus 66 n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~---~~~~~~~~~~~l~~~~i~~i~~d~~~~g~-lwi~t~~---~g 138 (781)
T 3v9f_A 66 NELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFS---VYQYNPEDPQSLITNDVTHITSSVQAGKG-LWVCTYY---RG 138 (781)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEE---EECCCTTCSSSCSCSCEEEEEECSSTTSE-EEEEESS---SC
T ss_pred cccceEEEcCCCCEEEEEeCCCCcceECCCCCeEE---eeccccCCCCCcccCcceEEEecCccCCC-EEEEECC---CC
Confidence 45999999888873555667745889998754311 11000 00 113466676665 544 4444422 12
Q ss_pred EEeecccccccc-ccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceee
Q 013578 165 LYMYGEEKAIST-NEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLG 243 (440)
Q Consensus 165 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 243 (440)
+..++....... ........++ . ..+.. ++...+| .+..++.++-|..||..+++...
T Consensus 139 l~~~~~~~~~~~~~~~~~~~~l~------------~-~~i~~------i~~d~~g--~lwigt~~~Gl~~~~~~~~~~~~ 197 (781)
T 3v9f_A 139 IEYLDIATGKFTHYNKSTVPALP------------S-EQTWT------ATEAEDG--KLYIGHVEGGLSILSLNDKSVKH 197 (781)
T ss_dssp EEEEETTTTEEEEESTTTCTTCS------------C-CCEEE------EEEEETT--EEEEEETTTEEEEEETTTTEEEE
T ss_pred eeEEECCCCeEEeeccCcccCCC------------c-cceEE------EEECCCC--CEEEEecCCCeEEEcCCCCceEe
Confidence 333332221100 0000000000 0 00111 1112234 34556666458899988765432
Q ss_pred eee-------CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee--eeccccceEEEEEcCCCCEE
Q 013578 244 NVD-------TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ--LKGHKSAVTWLCFAPNSEQI 314 (440)
Q Consensus 244 ~~~-------~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l 314 (440)
... .....|.++...++|.+.+ |+.+ -+.+||..... ......... .......|.++...++|. |
T Consensus 198 ~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~---~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-l 271 (781)
T 3v9f_A 198 FVHDPQNPNSLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNANTET---FTNFHNNPGNIHGALSSYIFSIKQLKDNK-L 271 (781)
T ss_dssp ECC--------CCSSEEEEEECTTCCEEE-EETT-EEEEEETTTTE---EEC-----------CCCCEEEEEECTTSE-E
T ss_pred eecCCCCcccCCCCceeEEEEcCCCCEEE-EeCC-cHheECCCCCc---EEEEEcCCCccccccCceEEEEEECCCCC-E
Confidence 111 1134578888888877554 4545 57788753221 110000000 011245699999888776 5
Q ss_pred EEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhh--
Q 013578 315 ITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTA-- 392 (440)
Q Consensus 315 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~-- 392 (440)
..|+..+-|.++|..+.............+........-....|.++...++|.+.++..++.|..++..++......
T Consensus 272 Wigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~ 351 (781)
T 3v9f_A 272 WIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYS 351 (781)
T ss_dssp EEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC--
T ss_pred EEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccC
Confidence 556664678888887543211000000000000000111234588899999999888777888888888765432211
Q ss_pred ------hccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 393 ------EKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 393 ------~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
.......|.++...+++ .|..|+.++-|..|+..+
T Consensus 352 ~~~~~~~~l~~~~v~~i~~d~~g---------~lWigt~~~Gl~~~~~~~ 392 (781)
T 3v9f_A 352 PTQMNESSLSNKVVSSVCDDGQG---------KLWIGTDGGGINVFENGK 392 (781)
T ss_dssp --CCCSSCCSSSCEEEEEECTTS---------CEEEEEBSSCEEEEETTE
T ss_pred ccccccCCCCCcceEEEEEcCCC---------CEEEEeCCCcEEEEECCC
Confidence 01123569999998876 455666566677777653
No 270
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.14 E-value=0.0068 Score=59.33 Aligned_cols=297 Identities=8% Similarity=0.015 Sum_probs=152.2
Q ss_pred cceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEe--cCCCCCCCceEEEccCCCeEEEEeecCCcceEEeec
Q 013578 92 DSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRI--NLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYG 169 (440)
Q Consensus 92 ~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~--~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~ 169 (440)
..|.++...++|.+.+.. .+ -+.+||..+........... .......|.++...+++... +++... .+..++
T Consensus 211 ~~i~~i~~d~~g~lwigt-~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~~---Gl~~~~ 284 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIGT-SK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLW-IATELN---GIMILD 284 (781)
T ss_dssp SSEEEEEECTTCCEEEEE-TT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEE-EEESSS---CEEEEE
T ss_pred CceeEEEEcCCCCEEEEe-CC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEE-EEeCCC---CeEEEC
Confidence 568899998888766543 44 48888876543211100000 01123567788877766543 444321 233333
Q ss_pred ccccccccccc-ccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeee--
Q 013578 170 EEKAISTNEGK-QQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVD-- 246 (440)
Q Consensus 170 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-- 246 (440)
........... ....+... -......... +. .++...+|. +-.|+.++-|..++..+........
T Consensus 285 ~~~~~~~~~~~~~f~~~~~~---~~~~~l~~~~-v~------~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~ 352 (781)
T 3v9f_A 285 LQQNQFLLPEQIRFEFIREG---DNNYSLSNAS-AR------YIFQDSFNN--IWIGTWGGGINFISNAPPTFHTWSYSP 352 (781)
T ss_dssp TTCC---------CEEECBC---SSTTSBSSSC-EE------EEEECSSCC--EEEEEBSSCEEEECSSCCSCEEEC---
T ss_pred CCCCeeeeeeccccccccCC---CCCCCCCCCe-EE------EEEEeCCCC--EEEEecCCeEEEeCCCCCcceeeccCc
Confidence 22211000000 00000000 0000000000 11 112234454 5556656669999887654322110
Q ss_pred -------CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeee-eeeccccceEEEEEcCCCCEEEEEe
Q 013578 247 -------TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM-QLKGHKSAVTWLCFAPNSEQIITAS 318 (440)
Q Consensus 247 -------~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~p~~~~l~s~~ 318 (440)
.....|.++...++|+ |.+|+.++-|..||..... ..... ........|.++...+++. |..|+
T Consensus 353 ~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~------~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt 424 (781)
T 3v9f_A 353 TQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRV------AIYNKENRELLSNSVLCSLKDSEGN-LWFGT 424 (781)
T ss_dssp -CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEE------EECC-----CCCSBEEEEEECTTSC-EEEEE
T ss_pred cccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCe------EEEccCCCCCCCcceEEEEECCCCC-EEEEe
Confidence 1234578888887776 4566766678888864322 00000 0012346789999887776 44567
Q ss_pred CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhc----
Q 013578 319 KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEK---- 394 (440)
Q Consensus 319 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~---- 394 (440)
.++-+..+|.+++.... +... ......|.++...++|.+.++.. +.|..||..+++.......
T Consensus 425 ~~~Gl~~~~~~~~~~~~--------~~~~----~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~ 491 (781)
T 3v9f_A 425 YLGNISYYNTRLKKFQI--------IELE----KNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQ 491 (781)
T ss_dssp TTEEEEEECSSSCEEEE--------CCST----TTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSS
T ss_pred ccCCEEEEcCCCCcEEE--------eccC----CCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccc
Confidence 66778888876543211 0000 11224577888888998777666 6799999887764332110
Q ss_pred cccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 395 AHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 395 ~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
.....|.++...+++ . |..|+.++-+..|+..+
T Consensus 492 ~~~~~i~~i~~d~~g--------~-lWigt~~~Gl~~~~~~~ 524 (781)
T 3v9f_A 492 LLENFVRSIAQDSEG--------R-FWIGTFGGGVGIYTPDM 524 (781)
T ss_dssp CSCSCEEEEEECTTC--------C-EEEEESSSCEEEECTTC
T ss_pred cccceeEEEEEcCCC--------C-EEEEEcCCCEEEEeCCC
Confidence 113578999998886 4 44455533466677654
No 271
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.12 E-value=0.0031 Score=54.01 Aligned_cols=184 Identities=10% Similarity=-0.054 Sum_probs=104.9
Q ss_pred EEeeCCceEEEEeCCCCcee-eeeeCCCCcccEEEecCCCCeEEEE-ecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578 223 ASCSEGTDISIWHGKTGKLL-GNVDTNQLKNNMAAISPNGRFLAAA-AFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300 (440)
Q Consensus 223 ~s~~~d~~i~vwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~ 300 (440)
.+-...+.|..+++..+... ..+.........+++.+.+..|+.. ...+.|.++++.... ..........
T Consensus 51 w~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--------~~~l~~~~~~ 122 (318)
T 3sov_A 51 WSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL--------RKVLFWQELD 122 (318)
T ss_dssp EEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS--------CEEEECSSCS
T ss_pred EEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc--------EEEEEeCCCC
Confidence 33344556777776544211 1122222345678898755555444 456778888864322 1111222335
Q ss_pred ceEEEEEcCCCCEEEEEe--CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CC
Q 013578 301 AVTWLCFAPNSEQIITAS--KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GS 376 (440)
Q Consensus 301 ~v~~~~~~p~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~ 376 (440)
....++++|.+..|+.+. ..+.|...++..... ..+ .. .....-..+++++++..|..++ .+
T Consensus 123 ~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~--------~~~----~~--~~l~~Pnglavd~~~~~lY~aD~~~~ 188 (318)
T 3sov_A 123 QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR--------FII----IN--SEIYWPNGLTLDYEEQKLYWADAKLN 188 (318)
T ss_dssp SEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC--------EEE----EC--SSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe--------EEE----EE--CCCCCccEEEEeccCCEEEEEECCCC
Confidence 578999999766555554 357788887763211 000 00 0112235799999777666554 68
Q ss_pred EEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 377 TLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 377 ~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
.|..+|..... ...+..+.......+++..+ .++.+-...+.|..++..+++
T Consensus 189 ~I~~~d~dG~~-~~~~~~~~~~~P~glav~~~---------~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 189 FIHKSNLDGTN-RQAVVKGSLPHPFALTLFED---------ILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp EEEEEETTSCS-CEEEECSCCSCEEEEEEETT---------EEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEcCCCCc-eEEEecCCCCCceEEEEeCC---------EEEEEecCCCeEEEEECCCCC
Confidence 99999986433 22222223455677877654 567776677888888886654
No 272
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.11 E-value=0.0014 Score=56.02 Aligned_cols=198 Identities=14% Similarity=0.115 Sum_probs=109.5
Q ss_pred cccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCC--EEEEEeEecCCCcee
Q 013578 210 SATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTAD--VKVWEIVYSKDGLVK 287 (440)
Q Consensus 210 ~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~ 287 (440)
..+.+.++++ ++++...++.|..||... +....+.. ......++++++|+++++...... |..+|...++ ..
T Consensus 35 egia~~~~g~-lyv~d~~~~~I~~~d~~g-~~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~---~~ 108 (306)
T 2p4o_A 35 ENLASAPDGT-IFVTNHEVGEIVSITPDG-NQQIHATV-EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT---VE 108 (306)
T ss_dssp EEEEECTTSC-EEEEETTTTEEEEECTTC-CEEEEEEC-SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC---EE
T ss_pred ceEEECCCCC-EEEEeCCCCeEEEECCCC-ceEEEEeC-CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe---EE
Confidence 3445567777 667766788899999774 44333333 345788999999996655443333 5445532221 11
Q ss_pred eeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccc-ccc-CCCCccccccccccCCCCCeeeeeeEEeCC
Q 013578 288 AVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRY-HLD-EDPKTLKVLPIPLLDSNGATLQYDRLSLSS 365 (440)
Q Consensus 288 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 365 (440)
.+..+. .......++..+++..+++-..++.|.++|...+. .+. .... .. .............+ ++
T Consensus 109 ---~~~~~~-~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~----~~--~~~~~~~~~~pngi--s~ 176 (306)
T 2p4o_A 109 ---TLLTLP-DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPM----LA--RSNSESVFPAANGL--KR 176 (306)
T ss_dssp ---EEEECT-TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGG----GS--CSSTTCCSCSEEEE--EE
T ss_pred ---EEEeCC-CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCc----cc--cccccCCCCcCCCc--Cc
Confidence 111111 12223455555655555555568888888876431 110 0000 00 00000001112234 78
Q ss_pred CCCEEEEec--CCEEEEEEcCC-ccch--hhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 366 DGKILAATH--GSTLQWLSVET-GKVL--DTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 366 ~g~~l~~~~--~~~i~i~d~~~-~~~~--~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
+++.|..++ .+.|..|+... ++.- ..+ ........+++++++ +++++....+.|.+++..
T Consensus 177 dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~--~~~~~P~gi~vd~dG--------~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 177 FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF--VEQTNIDDFAFDVEG--------NLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEE--EESCCCSSEEEBTTC--------CEEEECBTTCCEEEECTT
T ss_pred CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEE--eccCCCCCeEECCCC--------CEEEEeCCCCeEEEECCC
Confidence 888666654 68999999875 4321 111 112345678888887 777777777889998865
No 273
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.10 E-value=0.0044 Score=55.07 Aligned_cols=159 Identities=10% Similarity=-0.051 Sum_probs=92.3
Q ss_pred CCcccEEEecCCCCeEEEE-ecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe-C-CCcEEE
Q 013578 249 QLKNNMAAISPNGRFLAAA-AFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS-K-DGTLRV 325 (440)
Q Consensus 249 ~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~-~-dg~i~i 325 (440)
......+++.+.+..|+.. ...+.|.+.++.... ....+.........|+++|.+.+|+... . .+.|..
T Consensus 158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~--------~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~ 229 (400)
T 3p5b_L 158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKK 229 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS--------EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEE
T ss_pred CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCc--------eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEE
Confidence 3446678888855445444 456777777764221 1111222334578999999666555444 2 367888
Q ss_pred EecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEEEEcCCccchhhhh-ccccCCeEE
Q 013578 326 WNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQWLSVETGKVLDTAE-KAHEGEITC 402 (440)
Q Consensus 326 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~~~~~~~~~~-~~h~~~v~~ 402 (440)
.++...... .+ .. ........+++++++..|..++ .+.|..+|.........+. .........
T Consensus 230 ~~~dG~~~~--------~~----~~--~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~g 295 (400)
T 3p5b_L 230 GGLNGVDIY--------SL----VT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFS 295 (400)
T ss_dssp EETTSCSCE--------EE----EC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEE
T ss_pred EeCCCCccE--------EE----EE--CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEE
Confidence 887643210 00 00 1112345799998877776654 6789999986543322221 012345667
Q ss_pred EEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 403 MAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 403 v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
+++..+ .++++-...+.|..++..+++
T Consensus 296 l~v~~~---------~lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 296 LAVFED---------KVFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp EEEETT---------EEEEEESSSCSEEEEESSSCC
T ss_pred EEEeCC---------EEEEecCCCCeEEEEEcCCCC
Confidence 777544 577777777888888865553
No 274
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.04 E-value=0.0037 Score=54.46 Aligned_cols=144 Identities=10% Similarity=-0.022 Sum_probs=76.8
Q ss_pred eCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec-C-CCEEEEEeEecCCCceeeeeeeeeeeccccceE
Q 013578 226 SEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF-T-ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVT 303 (440)
Q Consensus 226 ~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~ 303 (440)
...+.|.+.++........+.........++++|.+..|+.... . +.|..+++.... ........-....
T Consensus 135 ~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~--------~~~~~~~~~~~Pn 206 (349)
T 3v64_C 135 SGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--------RRIIADTHLFWPN 206 (349)
T ss_dssp TTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--------CEESCCSSCSCEE
T ss_pred CCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC--------cEEEEECCCCCcc
Confidence 33445666665533222222223345678999997666666554 3 556666653221 1111112234568
Q ss_pred EEEEcCCCCEEEEE-eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-ecCCEEEEE
Q 013578 304 WLCFAPNSEQIITA-SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-THGSTLQWL 381 (440)
Q Consensus 304 ~~~~~p~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~i~i~ 381 (440)
.|+++|++..|+.+ ...+.|..+|+...... ... .....+ ...+++. .+.++.+ ...+.|..+
T Consensus 207 Gla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~-------~~~----~~~~~~---P~giav~-~~~ly~td~~~~~V~~~ 271 (349)
T 3v64_C 207 GLTIDYAGRRMYWVDAKHHVIERANLDGSHRK-------AVI----SQGLPH---PFAITVF-EDSLYWTDWHTKSINSA 271 (349)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCE-------EEE----CSSCSS---EEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred eEEEeCCCCEEEEEECCCCEEEEEeCCCCceE-------EEE----eCCCCC---ceEEEEE-CCEEEEecCCCCeEEEE
Confidence 99999876666544 45678999998642110 000 001112 2356663 3333333 346888888
Q ss_pred EcCCccchhhh
Q 013578 382 SVETGKVLDTA 392 (440)
Q Consensus 382 d~~~~~~~~~~ 392 (440)
+..+|+....+
T Consensus 272 ~~~~G~~~~~i 282 (349)
T 3v64_C 272 NKFTGKNQEII 282 (349)
T ss_dssp ETTTCCSCEEE
T ss_pred EccCCCccEEe
Confidence 87777765555
No 275
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.01 E-value=0.00051 Score=65.68 Aligned_cols=241 Identities=10% Similarity=0.008 Sum_probs=119.0
Q ss_pred cceeEEEEccCCCEEEEeeC-CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEee-cCC--cceEEe
Q 013578 92 DSVTGLCFSSDGKCLATACA-DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATH-NLS--GCSLYM 167 (440)
Q Consensus 92 ~~V~~l~~s~dg~~l~t~s~-dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-~~~--~~~~~~ 167 (440)
....++++..+|++++.|+. ++.+.+||..+..- .... .......-.+++..++++.++.++. ++. ...+.+
T Consensus 243 ~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W---~~~~-~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~ 318 (656)
T 1k3i_A 243 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW---IPGP-DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEV 318 (656)
T ss_dssp CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEE---EECC-CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEE
T ss_pred CccccccCCCCCCEEEeCCCCCCceEEecCcCCce---eECC-CCCccccccceEEecCCeEEEEeCcccCCcccccceE
Confidence 33445788889999999984 46899999876531 1111 1122223345667778988888873 321 134455
Q ss_pred eccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeC---------CceEEEEeCCC
Q 013578 168 YGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSE---------GTDISIWHGKT 238 (440)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---------d~~i~vwd~~~ 238 (440)
|+..... |..........+.. ......+..++. +++.++. ...+..||..+
T Consensus 319 yd~~t~~-----------------W~~~~~~~~~p~~~--~~~~~~~~~~~~-iyv~Gg~~g~~~~~~~~~~v~~yd~~~ 378 (656)
T 1k3i_A 319 YSPSSKT-----------------WTSLPNAKVNPMLT--ADKQGLYRSDNH-AWLFGWKKGSVFQAGPSTAMNWYYTSG 378 (656)
T ss_dssp EETTTTE-----------------EEEETTSCSGGGCC--CCTTGGGTTTCS-CCEEECGGGCEEECCSSSEEEEEECST
T ss_pred eCCCCCc-----------------ceeCCCcccccccc--ccccceeecCCc-eEEEECCCCcEEEecCccceeeeecCC
Confidence 5544322 11100000000000 000011123333 3333332 34578888887
Q ss_pred CceeeeeeCCCC---------cccEEEec-CCCCeEEEEecCC-----------CEEEEEeEecCCCceeeeeeeeeeec
Q 013578 239 GKLLGNVDTNQL---------KNNMAAIS-PNGRFLAAAAFTA-----------DVKVWEIVYSKDGLVKAVTSVMQLKG 297 (440)
Q Consensus 239 ~~~~~~~~~~~~---------~v~~~~~s-~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~~ 297 (440)
............ .-.++.+. .+++++++|+.++ .|.+||..... +..+..-..
T Consensus 379 ~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~------W~~~~~~~m 452 (656)
T 1k3i_A 379 SGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP------NTVFASNGL 452 (656)
T ss_dssp TCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC------EEEECTTCC
T ss_pred cceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCC------eeEEccCCC
Confidence 654433222111 12333443 4788888887543 45566543221 111110011
Q ss_pred cccc-eEEEEEcCCCCEEEEEeCC-----------CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC
Q 013578 298 HKSA-VTWLCFAPNSEQIITASKD-----------GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS 365 (440)
Q Consensus 298 h~~~-v~~~~~~p~~~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 365 (440)
+... -.++...|+++.++.|+.+ ..+.+||..+..... +.........| ....+.+
T Consensus 453 p~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~--------~~~~~~~R~~h----s~a~ll~ 520 (656)
T 1k3i_A 453 YFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK--------QNPNSIVRVYH----SISLLLP 520 (656)
T ss_dssp SSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE--------CCCCSSCCCTT----EEEEECT
T ss_pred CCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceee--------cCCCCCccccc----cHhhcCC
Confidence 1222 2345667899999999864 468899987654221 10001111122 2355679
Q ss_pred CCCEEEEec
Q 013578 366 DGKILAATH 374 (440)
Q Consensus 366 ~g~~l~~~~ 374 (440)
+|++++.|+
T Consensus 521 dg~v~v~GG 529 (656)
T 1k3i_A 521 DGRVFNGGG 529 (656)
T ss_dssp TSCEEEEEC
T ss_pred CcEEEecCC
Confidence 999988876
No 276
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.00 E-value=0.0058 Score=52.67 Aligned_cols=157 Identities=10% Similarity=0.054 Sum_probs=89.2
Q ss_pred CCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEec
Q 013578 249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNI 328 (440)
Q Consensus 249 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~ 328 (440)
...+..+++.+++.+++++ .+|.+..-+ ... + ..+..+. ......+..+.+.+++..+ ..+.+|.+++.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~g-~~G~~~~S~--d~g-G--~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~ 232 (327)
T 2xbg_A 162 IGVMRNLNRSPSGEYVAVS-SRGSFYSTW--EPG-Q--TAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDP 232 (327)
T ss_dssp CCCEEEEEECTTSCEEEEE-TTSSEEEEE--CTT-C--SSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEET
T ss_pred CcceEEEEEcCCCcEEEEE-CCCcEEEEe--CCC-C--CceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecC
Confidence 3457788899988877665 456554321 110 0 1111111 2345678889999988755 5556788777643
Q ss_pred CccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhhhhc--cccCCeEEEEec
Q 013578 329 NVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDTAEK--AHEGEITCMAWA 406 (440)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~~~~--~h~~~v~~v~~~ 406 (440)
..+..- .....+. ......+..+++.+++.+++++.++.+ ++....|+.-..+.. .....+.++.|.
T Consensus 233 D~G~tW-------~~~~~~~---~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~ 301 (327)
T 2xbg_A 233 DNSENW-------GELLSPL---RRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFF 301 (327)
T ss_dssp TEEEEE-------CCCBCTT---SSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEE
T ss_pred CCCCee-------EeccCCc---ccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEE
Confidence 212111 0000000 001123677889999999999888877 344444443322211 234568889997
Q ss_pred CCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578 407 PKTIPMGNQQVSVLATSSVDKKVKLWLA 434 (440)
Q Consensus 407 ~~~~~~~~~~~~~l~t~~~Dg~i~vw~~ 434 (440)
+++ .++.++.+|.|.-++-
T Consensus 302 ~~~---------~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 302 SPD---------QGFILGQKGILLRYVT 320 (327)
T ss_dssp ETT---------EEEEECSTTEEEEECC
T ss_pred CCC---------ceEEEcCCceEEEEcC
Confidence 654 5667778998877654
No 277
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.99 E-value=0.0054 Score=52.53 Aligned_cols=148 Identities=12% Similarity=-0.019 Sum_probs=79.5
Q ss_pred EEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec--CCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578 223 ASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF--TADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300 (440)
Q Consensus 223 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~ 300 (440)
++-...+.|.++++........+.........++++|.+..|+.... .+.|..+++.... ........-.
T Consensus 95 ~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~--------~~~~~~~~l~ 166 (318)
T 3sov_A 95 WTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS--------RFIIINSEIY 166 (318)
T ss_dssp EEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS--------CEEEECSSCS
T ss_pred EEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC--------eEEEEECCCC
Confidence 33334455777776533222222233345678999987777776653 4566666653211 0111112224
Q ss_pred ceEEEEEcCCCCEEEEE-eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEE
Q 013578 301 AVTWLCFAPNSEQIITA-SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQ 379 (440)
Q Consensus 301 ~v~~~~~~p~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~ 379 (440)
....|+++|++..|+.+ +..+.|..+|+..... +.+ ......+ ...+++..++-|.+-...+.|.
T Consensus 167 ~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~--------~~~---~~~~~~~---P~glav~~~~lywtd~~~~~V~ 232 (318)
T 3sov_A 167 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR--------QAV---VKGSLPH---PFALTLFEDILYWTDWSTHSIL 232 (318)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------EEE---ECSCCSC---EEEEEEETTEEEEEETTTTEEE
T ss_pred CccEEEEeccCCEEEEEECCCCEEEEEcCCCCce--------EEE---ecCCCCC---ceEEEEeCCEEEEEecCCCeEE
Confidence 56899999976666554 4567899999864211 000 0001112 2356664333233323468999
Q ss_pred EEEcCCccchhhh
Q 013578 380 WLSVETGKVLDTA 392 (440)
Q Consensus 380 i~d~~~~~~~~~~ 392 (440)
.++..+|+....+
T Consensus 233 ~~~~~~G~~~~~i 245 (318)
T 3sov_A 233 ACNKYTGEGLREI 245 (318)
T ss_dssp EEETTTCCSCEEE
T ss_pred EEECCCCCceEEE
Confidence 9999888765554
No 278
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.99 E-value=0.0035 Score=55.48 Aligned_cols=144 Identities=10% Similarity=-0.016 Sum_probs=77.3
Q ss_pred eCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecC--CCEEEEEeEecCCCceeeeeeeeeeeccccceE
Q 013578 226 SEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFT--ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVT 303 (440)
Q Consensus 226 ~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~ 303 (440)
...+.|.+.++........+.........++++|.+..|+..... +.|..+++.... ........-....
T Consensus 178 ~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~--------~~~~~~~~~~~Pn 249 (386)
T 3v65_B 178 SGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--------RRIIADTHLFWPN 249 (386)
T ss_dssp TTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--------CEEEECSSCSCEE
T ss_pred CCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC--------cEEEEECCCCCee
Confidence 334456666655332222222233456789999877777666543 456666553221 1111112234568
Q ss_pred EEEEcCCCCEEEEE-eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-ecCCEEEEE
Q 013578 304 WLCFAPNSEQIITA-SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-THGSTLQWL 381 (440)
Q Consensus 304 ~~~~~p~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~i~i~ 381 (440)
.|+|+|++..|+.+ +..+.|..+|+..... ..+ ......+ ...+++. .+.++.+ ...+.|..+
T Consensus 250 Glavd~~~~~lY~aD~~~~~I~~~d~dG~~~--------~~~---~~~~~~~---P~giav~-~~~ly~td~~~~~V~~~ 314 (386)
T 3v65_B 250 GLTIDYAGRRMYWVDAKHHVIERANLDGSHR--------KAV---ISQGLPH---PFAITVF-EDSLYWTDWHTKSINSA 314 (386)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEECTTSCSC--------EEE---ECSSCSS---EEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred eEEEeCCCCEEEEEECCCCEEEEEeCCCCee--------EEE---EECCCCC---ceEEEEE-CCEEEEeeCCCCeEEEE
Confidence 99999866655544 4567899998864211 000 0001112 3356663 3333333 347889999
Q ss_pred EcCCccchhhh
Q 013578 382 SVETGKVLDTA 392 (440)
Q Consensus 382 d~~~~~~~~~~ 392 (440)
+..+|+.+..+
T Consensus 315 ~~~~G~~~~~i 325 (386)
T 3v65_B 315 NKFTGKNQEII 325 (386)
T ss_dssp ETTTCCSCEEE
T ss_pred ECCCCcceEEE
Confidence 97777766655
No 279
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.97 E-value=0.0064 Score=52.09 Aligned_cols=148 Identities=13% Similarity=-0.007 Sum_probs=80.0
Q ss_pred EEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecC--CCEEEEEeEecCCCceeeeeeeeee-eccc
Q 013578 223 ASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFT--ADVKVWEIVYSKDGLVKAVTSVMQL-KGHK 299 (440)
Q Consensus 223 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~-~~h~ 299 (440)
++-...+.|.++++........+.........++++|.+..|+.+... +.|..+++.... ...+ ...-
T Consensus 93 ~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~---------~~~~~~~~~ 163 (316)
T 1ijq_A 93 WTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---------IYSLVTENI 163 (316)
T ss_dssp EEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC---------EEEEECSSC
T ss_pred EEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC---------eEEEEECCC
Confidence 333445567777765333222223233456789999977766666543 567666653211 1111 1223
Q ss_pred cceEEEEEcCCCCEEEEEe-CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCE
Q 013578 300 SAVTWLCFAPNSEQIITAS-KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGST 377 (440)
Q Consensus 300 ~~v~~~~~~p~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~ 377 (440)
.....|+++|++..|+.+. ..+.|..+|+..... +.+. .......+ ...+++.. +.++.+- ..+.
T Consensus 164 ~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~--------~~~~-~~~~~~~~---P~giav~~-~~ly~~d~~~~~ 230 (316)
T 1ijq_A 164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR--------KTIL-EDEKRLAH---PFSLAVFE-DKVFWTDIINEA 230 (316)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------EEEE-ECTTTTSS---EEEEEEET-TEEEEEETTTTE
T ss_pred CCceEEEEeccCCEEEEEECCCCeEEEEecCCCce--------EEEe-ecCCccCC---cEEEEEEC-CEEEEEECCCCe
Confidence 4578999998776665554 567899999874211 1000 00001112 23566643 4433333 4689
Q ss_pred EEEEEcCCccchhhh
Q 013578 378 LQWLSVETGKVLDTA 392 (440)
Q Consensus 378 i~i~d~~~~~~~~~~ 392 (440)
|..++..+|+.+..+
T Consensus 231 V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 231 IFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEEETTTCCCCEEE
T ss_pred EEEEeCCCCcceEEE
Confidence 999998877765554
No 280
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.97 E-value=0.0085 Score=53.24 Aligned_cols=151 Identities=13% Similarity=-0.023 Sum_probs=83.8
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec--CCCEEEEEeEecCCCceeeeeeeeeeecc
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF--TADVKVWEIVYSKDGLVKAVTSVMQLKGH 298 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~h 298 (440)
++++-...+.|.+.++........+.........++++|.+..|+.... .+.|...++.... ........
T Consensus 173 lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~--------~~~~~~~~ 244 (400)
T 3p5b_L 173 IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--------IYSLVTEN 244 (400)
T ss_dssp EEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS--------CEEEECSS
T ss_pred eEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc--------cEEEEECC
Confidence 3444445566777777644433333333445688999997777776653 3667777664221 11111222
Q ss_pred ccceEEEEEcCCCCEEEEEe-CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE-ecCC
Q 013578 299 KSAVTWLCFAPNSEQIITAS-KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA-THGS 376 (440)
Q Consensus 299 ~~~v~~~~~~p~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~ 376 (440)
-.....|+++|++..|+.+. ..+.|..+|+..... +.+. .......+ ...+++.. +.++.+ ...+
T Consensus 245 l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~--------~~~~-~~~~~l~~---P~gl~v~~-~~lywtd~~~~ 311 (400)
T 3p5b_L 245 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR--------KTIL-EDEKRLAH---PFSLAVFE-DKVFWTDIINE 311 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC--------EEEE-ECSSTTSS---EEEEEEET-TEEEEEESSSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc--------EEEE-eCCCCCCC---CEEEEEeC-CEEEEecCCCC
Confidence 35678999998777666554 567899999864311 0000 00000111 22455532 233333 3467
Q ss_pred EEEEEEcCCccchhhh
Q 013578 377 TLQWLSVETGKVLDTA 392 (440)
Q Consensus 377 ~i~i~d~~~~~~~~~~ 392 (440)
.|..+|..+|+.+..+
T Consensus 312 ~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 312 AIFSANRLTGSDVNLL 327 (400)
T ss_dssp SEEEEESSSCCCCEEE
T ss_pred eEEEEEcCCCCceEEE
Confidence 8888898888766655
No 281
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.95 E-value=0.0069 Score=54.75 Aligned_cols=276 Identities=12% Similarity=0.046 Sum_probs=136.1
Q ss_pred ceeEEEEcc-CCCEEEEee-CCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEE-------ccCCCeEEEEeecCC--
Q 013578 93 SVTGLCFSS-DGKCLATAC-ADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAF-------ADNATSIVVATHNLS-- 161 (440)
Q Consensus 93 ~V~~l~~s~-dg~~l~t~s-~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~-------~~~~~~l~~~~~~~~-- 161 (440)
....|+|+| ++..|+.+. ..+.|++.|+..+... .+.......-..+..++| ++++.+|+++.....
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~--~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS--SPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEE--EEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEE--EEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence 467899998 344455444 3466777777754321 111111111234788999 999997777765531
Q ss_pred --cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCC--
Q 013578 162 --GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGK-- 237 (440)
Q Consensus 162 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~-- 237 (440)
...+.+...... .. |... .....+.....+..+...+++..++++...++.|..+|+.
T Consensus 218 ~~~~~V~~i~r~~~---------G~-------~~~~--~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~ 279 (496)
T 3kya_A 218 DESPSVYIIKRNAD---------GT-------FDDR--SDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDY 279 (496)
T ss_dssp GGEEEEEEEECCTT---------SC-------CSTT--SCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHH
T ss_pred ccCceEEEEecCCC---------Cc-------eeec--ccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccc
Confidence 122333321110 00 0000 0001111223344555677666577777788889999987
Q ss_pred -----CCce-----------eee-eeC-CCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeee---
Q 013578 238 -----TGKL-----------LGN-VDT-NQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQL--- 295 (440)
Q Consensus 238 -----~~~~-----------~~~-~~~-~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~--- 295 (440)
++.. ... +.. .......++|+|+|+.|+++. ....|+.++..... +.......+.-.
T Consensus 280 ~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~-~~~~~~~~~aG~~g~ 358 (496)
T 3kya_A 280 FKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIK-KEFITPYNFVGGYKQ 358 (496)
T ss_dssp HHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTT-TEECCCEEEEEBTTB
T ss_pred cccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCc-ceecccEEecCCCCC
Confidence 5543 112 221 223357899999999766665 45667776654321 000000000000
Q ss_pred ecc---------ccceE-EEEEc-------CCCCEEEEEeCCCcEEEEecCccccccCCCCcccc------ccccc----
Q 013578 296 KGH---------KSAVT-WLCFA-------PNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKV------LPIPL---- 348 (440)
Q Consensus 296 ~~h---------~~~v~-~~~~~-------p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~---- 348 (440)
.+. -.... .+... +++.++++-..+..|+.++.. +. +......... ...-.
T Consensus 359 ~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~-G~-v~TiaG~g~~~~~~~~~~~G~~dG~ 436 (496)
T 3kya_A 359 SGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPE-GI-VSTYAGRGASTSLADGNQWGTDDGD 436 (496)
T ss_dssp CCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTT-CB-EEEEEESCTTHHHHHSCSCCCCCEE
T ss_pred CcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCC-CC-EEEEecccccccccCccccccCCCC
Confidence 011 01234 45554 456666666677889998843 21 1110000000 00000
Q ss_pred cCCCCCeeeeeeEEeCCC-CCEEEEe-cCCEEEEEEcCCccchhh
Q 013578 349 LDSNGATLQYDRLSLSSD-GKILAAT-HGSTLQWLSVETGKVLDT 391 (440)
Q Consensus 349 ~~~~~~~~~v~~~~~s~~-g~~l~~~-~~~~i~i~d~~~~~~~~~ 391 (440)
......-..-..++++++ |.++++- .+..|+.++++.......
T Consensus 437 ~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~~ 481 (496)
T 3kya_A 437 LREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAG 481 (496)
T ss_dssp TTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC----
T ss_pred chhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccccc
Confidence 000011123457889986 6655553 368899988876655543
No 282
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.89 E-value=0.00083 Score=62.80 Aligned_cols=54 Identities=13% Similarity=-0.036 Sum_probs=34.9
Q ss_pred ceEEEEeCCCCceeeeeeCCCC------cccE---EEecCCCC---eEEEEecCCCEEEEEeEecC
Q 013578 229 TDISIWHGKTGKLLGNVDTNQL------KNNM---AAISPNGR---FLAAAAFTADVKVWEIVYSK 282 (440)
Q Consensus 229 ~~i~vwd~~~~~~~~~~~~~~~------~v~~---~~~s~~~~---~l~~~~~dg~i~i~d~~~~~ 282 (440)
+.|..+|..+|+.+..++.... .+.. +....+|+ .++.++.+|.++++|..+++
T Consensus 272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 337 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGN 337 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred EEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCC
Confidence 3588899999998877653211 1111 22224674 67788889999999875544
No 283
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.88 E-value=0.00018 Score=68.73 Aligned_cols=201 Identities=11% Similarity=0.078 Sum_probs=115.2
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcc-----------cEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeee
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKN-----------NMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAV 289 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v-----------~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 289 (440)
.++.++.++.|.-+|..+|+.+-++....... ..+++ .+..+++++.|+.|..+|..+++
T Consensus 68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~------- 138 (668)
T 1kv9_A 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGK------- 138 (668)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCC-------
T ss_pred EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCC-------
Confidence 56777778899999999999987775432211 11222 35678888889999999987665
Q ss_pred eeeeeeeccc----cceEE-EEEcCCCCEEEEEeC------CCcEEEEecCccccccCCCCc---cc-c-----c--ccc
Q 013578 290 TSVMQLKGHK----SAVTW-LCFAPNSEQIITASK------DGTLRVWNINVRYHLDEDPKT---LK-V-----L--PIP 347 (440)
Q Consensus 290 ~~~~~~~~h~----~~v~~-~~~~p~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~---~~-~-----~--~~~ 347 (440)
.+-.+.... ..+.+ ..+. ++ .++.++. +|.|..+|.++++.+...... .. . + ..+
T Consensus 139 -~~W~~~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~ 215 (668)
T 1kv9_A 139 -AIWSQQTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAK 215 (668)
T ss_dssp -EEEEEECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHT
T ss_pred -EeeeeccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccc
Confidence 222222110 11110 0111 34 4444432 588999999988765332110 00 0 0 000
Q ss_pred ccCC------CCCeeeeeeEEeCCCCCEEEEec-CC-------------------EEEEEEcCCccchhhhhcc-cc---
Q 013578 348 LLDS------NGATLQYDRLSLSSDGKILAATH-GS-------------------TLQWLSVETGKVLDTAEKA-HE--- 397 (440)
Q Consensus 348 ~~~~------~~~~~~v~~~~~s~~g~~l~~~~-~~-------------------~i~i~d~~~~~~~~~~~~~-h~--- 397 (440)
.... .+.......+++++++..+..+. ++ .|..+|..+|+.+..+... |.
T Consensus 216 ~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd 295 (668)
T 1kv9_A 216 TWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWD 295 (668)
T ss_dssp TCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSC
T ss_pred cCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCcccc
Confidence 0000 01111234578888877776654 33 4999999999988776432 22
Q ss_pred ----CCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 398 ----GEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 398 ----~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
.+.....+..++ .....|+.++.+|.++++|..+++
T Consensus 296 ~~~~~~~~~~d~~~~G-----~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 296 FTATQQITLAELNIDG-----KPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp CCCCSCEEEEEEEETT-----EEEEEEEECCTTSEEEEEETTTCC
T ss_pred ccCCCCcEEEEeccCC-----cEEEEEEEECCCCEEEEEECCCCC
Confidence 222222222343 111378999999999999999886
No 284
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.87 E-value=0.0018 Score=55.24 Aligned_cols=194 Identities=15% Similarity=0.222 Sum_probs=109.9
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCC----CCe--EEEEe-c---CCCEEEEEeEecCCCceeeee
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPN----GRF--LAAAA-F---TADVKVWEIVYSKDGLVKAVT 290 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~----~~~--l~~~~-~---dg~i~i~d~~~~~~~~~~~~~ 290 (440)
+++.....+-+.+||+ +|+.++.+.. ..+..+.+-|+ |+. ++.++ . +++|.+|++..... .+.
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~----~l~ 114 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG----TLQ 114 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC----CEE
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC----cee
Confidence 4555566677999999 7998888764 34555555442 222 33333 3 46899998843221 111
Q ss_pred eeee----eeccccceEEEEE--cCC-CC-EEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEE
Q 013578 291 SVMQ----LKGHKSAVTWLCF--APN-SE-QIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS 362 (440)
Q Consensus 291 ~~~~----~~~h~~~v~~~~~--~p~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 362 (440)
.+.. +..-...+..+++ +|. +. +++....+|.+..|++.....-....+..+.+.. . ..+..|.
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-----g---sq~Egcv 186 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-----N---SQTEGMA 186 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-----S---SCEEEEE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-----C---CCcceEE
Confidence 1111 1111145666777 774 43 6788888999999998532110001111222221 1 1355788
Q ss_pred eCCCCCEEEEec-CCEEEEEEcC-----Cccchhhhhcccc-CCeEEEEec--CCCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578 363 LSSDGKILAATH-GSTLQWLSVE-----TGKVLDTAEKAHE-GEITCMAWA--PKTIPMGNQQVSVLATSSVDKKVKLWL 433 (440)
Q Consensus 363 ~s~~g~~l~~~~-~~~i~i~d~~-----~~~~~~~~~~~h~-~~v~~v~~~--~~~~~~~~~~~~~l~t~~~Dg~i~vw~ 433 (440)
..+....|..+. +..|..|+.+ +++.+..+..+|- ..+..|+.. +++ ++.+|+++-.+.++.||+
T Consensus 187 vDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g------~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 187 ADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADG------KGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp EETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGG------CEEEEEEEGGGTEEEEEE
T ss_pred EcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCC------CEEEEEEcCCCCEEEEEE
Confidence 888777777765 5667777755 3444443322232 368888884 443 113444444678999999
Q ss_pred CC
Q 013578 434 AP 435 (440)
Q Consensus 434 ~~ 435 (440)
..
T Consensus 261 r~ 262 (355)
T 3amr_A 261 RQ 262 (355)
T ss_dssp SS
T ss_pred CC
Confidence 86
No 285
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.84 E-value=0.013 Score=51.09 Aligned_cols=63 Identities=16% Similarity=0.167 Sum_probs=37.6
Q ss_pred CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccC---CCeEEEE
Q 013578 91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADN---ATSIVVA 156 (440)
Q Consensus 91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~---~~~l~~~ 156 (440)
-..-+.++|.|||+++++ ..+|.|++++ .+....................++|+|+ +..|.++
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~ 95 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAY 95 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEE
Confidence 345779999999985555 5669999888 3321111101111122356788999988 5555444
No 286
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.83 E-value=0.015 Score=56.36 Aligned_cols=150 Identities=13% Similarity=-0.016 Sum_probs=81.3
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecC--CCEEEEEeEecCCCceeeeeeeeeeecc
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFT--ADVKVWEIVYSKDGLVKAVTSVMQLKGH 298 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~h 298 (440)
++++-...+.|.+.++........+.........|+++|.+.+|+..... +.|...++.... ....+...
T Consensus 485 LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~--------~~~lv~~~ 556 (791)
T 3m0c_C 485 IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--------IYSLVTEN 556 (791)
T ss_dssp EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--------EEEEECSS
T ss_pred EEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc--------eEEEEeCC
Confidence 34444455667777776433323333333456889999987777776532 556666653221 11112223
Q ss_pred ccceEEEEEcCCCCEEEEEe-CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe--cC
Q 013578 299 KSAVTWLCFAPNSEQIITAS-KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT--HG 375 (440)
Q Consensus 299 ~~~v~~~~~~p~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~--~~ 375 (440)
-.....|++++.+..|+.+. ..+.|...++...... .+ ............|++.. ..|..+ ..
T Consensus 557 l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~--------~v----~~~~~~l~~P~glav~~--~~lYwtD~~~ 622 (791)
T 3m0c_C 557 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK--------TI----LEDEKRLAHPFSLAVFE--DKVFWTDIIN 622 (791)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--------EE----EECTTTTSSEEEEEEET--TEEEEEETTT
T ss_pred CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE--------EE----ecCCCccCCCCEEEEeC--CEEEEEECCC
Confidence 35688999998766666554 5567888888643211 00 00000011122455533 344443 36
Q ss_pred CEEEEEEcCCccchhhh
Q 013578 376 STLQWLSVETGKVLDTA 392 (440)
Q Consensus 376 ~~i~i~d~~~~~~~~~~ 392 (440)
+.|...+..+|+.+..+
T Consensus 623 ~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 623 EAIFSANRLTGSDVNLL 639 (791)
T ss_dssp TEEEEEETTTCCCCEEE
T ss_pred CEEEEEeCCCCcceEEe
Confidence 78888888777665554
No 287
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.81 E-value=0.00027 Score=67.77 Aligned_cols=171 Identities=12% Similarity=-0.030 Sum_probs=91.9
Q ss_pred CCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec--CCCEEEEEeEecCCCceeeeeee
Q 013578 215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF--TADVKVWEIVYSKDGLVKAVTSV 292 (440)
Q Consensus 215 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~ 292 (440)
.+.+..++++-...+.|.++++........+.........++++|.+.+|+.+.. .+.|..+++.... ..
T Consensus 461 D~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~--------~~ 532 (699)
T 1n7d_A 461 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--------IY 532 (699)
T ss_dssp CCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC--------CC
T ss_pred EeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC--------ee
Confidence 3334435566566778999998755433333333345678999997666666543 2677776653221 01
Q ss_pred eeeeccccceEEEEEcCCCCEEE-EEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEE
Q 013578 293 MQLKGHKSAVTWLCFAPNSEQII-TASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILA 371 (440)
Q Consensus 293 ~~~~~h~~~v~~~~~~p~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 371 (440)
......-.....|+|+|++..|+ +-+..+.|..+++...... .+ ............+++..+.-|++
T Consensus 533 ~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~--------~~----~~~~~~~~~P~glavd~~~lywt 600 (699)
T 1n7d_A 533 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK--------TI----LEDEKRLAHPFSLAVFEDKVFWT 600 (699)
T ss_dssp EESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE--------EE----CCCSSSCSSCCCCEEETTEEEEE
T ss_pred EEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE--------EE----EecCCcCCCceEeEEECCEEEEE
Confidence 11111223467899999765554 4456678999998642110 00 00000011122455544422222
Q ss_pred EecCCEEEEEEcCCccchhhhhccccCCeEEEEec
Q 013578 372 ATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWA 406 (440)
Q Consensus 372 ~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~ 406 (440)
....+.|..++..+|+.+..+. ......+.|++.
T Consensus 601 d~~~~~V~~~d~~~G~~~~~i~-~~~~~P~~i~v~ 634 (699)
T 1n7d_A 601 DIINEAIFSANRLTGSDVNLLA-ENLLSPEDMVLF 634 (699)
T ss_dssp CSTTTCEEEEETTTEEEEECCC-TTCSSCCCCCBC
T ss_pred eCCCCeEEEEEccCCCceEEee-cCCCCCcEEEEe
Confidence 2346899999988888766653 222234445433
No 288
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.77 E-value=0.03 Score=54.28 Aligned_cols=186 Identities=10% Similarity=-0.069 Sum_probs=103.5
Q ss_pred EEEEeeCCceEEEEeCCCC----ceeeeeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeee
Q 013578 221 IIASCSEGTDISIWHGKTG----KLLGNVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQL 295 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~ 295 (440)
++++-...+.|+.+++... .....+.........+++.+.++.|+.+. ..+.|.+.++.... ....+
T Consensus 438 lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~--------~~~l~ 509 (791)
T 3m0c_C 438 IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--------RKTLF 509 (791)
T ss_dssp EEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS--------EEEEE
T ss_pred eEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe--------EEEEE
Confidence 4444445566777776532 22223332344567899998776666554 56778888864322 11112
Q ss_pred eccccceEEEEEcCCCCEEEEEe-CC-CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe
Q 013578 296 KGHKSAVTWLCFAPNSEQIITAS-KD-GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT 373 (440)
Q Consensus 296 ~~h~~~v~~~~~~p~~~~l~s~~-~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 373 (440)
.........|+++|.+.+|+... .+ +.|...++...... .+ .. ........|++++.+..|..+
T Consensus 510 ~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~--------~l----v~--~~l~~P~GLavD~~~~~LYwa 575 (791)
T 3m0c_C 510 RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--------SL----VT--ENIQWPNGITLDLLSGRLYWV 575 (791)
T ss_dssp ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE--------EE----EC--SSCSCEEEEEEETTTTEEEEE
T ss_pred eCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE--------EE----Ee--CCCCCceEEEEecCCCeEEEE
Confidence 22334578999999766555544 33 67888887643211 00 00 111235579999877766655
Q ss_pred c--CCEEEEEEcCCccchhhhhc-cccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 374 H--GSTLQWLSVETGKVLDTAEK-AHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 374 ~--~~~i~i~d~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
+ .+.|..+++........+.. ..-....+|++..+ .++++-...+.|...+..++
T Consensus 576 D~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~---------~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 576 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED---------KVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT---------EEEEEETTTTEEEEEETTTC
T ss_pred eCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC---------EEEEEECCCCEEEEEeCCCC
Confidence 4 57899999865433222210 12234567777554 46666666777777775554
No 289
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.76 E-value=0.0024 Score=57.33 Aligned_cols=195 Identities=7% Similarity=-0.045 Sum_probs=106.5
Q ss_pred ccccCCC--CCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCC---CEEEEEeEecCCCc
Q 013578 211 ATYGTAD--GSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTA---DVKVWEIVYSKDGL 285 (440)
Q Consensus 211 ~~~~~~~--~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~i~d~~~~~~~~ 285 (440)
.+.+.++ +. .|+.+...+.|+.+|..+++..... ........++++++|+ |+++...+ .-.++.+.....
T Consensus 143 gvavd~~s~~g-~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~-- 217 (433)
T 4hw6_A 143 RMMFDPNSNYD-DLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG-- 217 (433)
T ss_dssp EEEECTTTTTC-EEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT--
T ss_pred eEEEccccCCC-EEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC--
Confidence 3444553 33 3444433378999999877655433 3344578899999999 55554422 122222221110
Q ss_pred eeeeeeeeeeeccccceEEEEEcC-CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeC
Q 013578 286 VKAVTSVMQLKGHKSAVTWLCFAP-NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLS 364 (440)
Q Consensus 286 ~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 364 (440)
.... ..+. .......++++| ++.++++-..++.|+.+|..++.... .... . .. ...-..++|+
T Consensus 218 ~~~~---~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~------~~~~----~-~~-~~~~~~ia~d 281 (433)
T 4hw6_A 218 FTER---LSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE------EEVM----M-DT-KGSNFHIVWH 281 (433)
T ss_dssp TCCE---EEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE------EEEE----C-SC-CSSCEEEEEC
T ss_pred eecc---cccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE------EEec----c-CC-CCCcccEEEe
Confidence 0000 1111 223456788999 66666566677889999887443210 0000 0 00 0112259999
Q ss_pred CCCCEEEEec--CCEEEEEEcC--Cccch--hhhhc-----c---------ccCCeEEEEe---------cCCCCCCCCC
Q 013578 365 SDGKILAATH--GSTLQWLSVE--TGKVL--DTAEK-----A---------HEGEITCMAW---------APKTIPMGNQ 415 (440)
Q Consensus 365 ~~g~~l~~~~--~~~i~i~d~~--~~~~~--~~~~~-----~---------h~~~v~~v~~---------~~~~~~~~~~ 415 (440)
|+|++|..++ .+.|+.++.. ++... ..+.. + .-.....+++ .+++
T Consensus 282 pdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g------ 355 (433)
T 4hw6_A 282 PTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY------ 355 (433)
T ss_dssp TTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE------
T ss_pred CCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC------
Confidence 9999665544 6789998765 33221 11100 0 1124667888 5665
Q ss_pred cceEEEEeeCCCeEEEEeC
Q 013578 416 QVSVLATSSVDKKVKLWLA 434 (440)
Q Consensus 416 ~~~~l~t~~~Dg~i~vw~~ 434 (440)
.++++-...+.|+.++.
T Consensus 356 --~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 356 --DFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp --EEEEEETTTTEEEEECT
T ss_pred --cEEEEECCCCEEEEECC
Confidence 66666666788888874
No 290
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.73 E-value=0.0012 Score=61.81 Aligned_cols=31 Identities=19% Similarity=0.191 Sum_probs=24.7
Q ss_pred CCC--eEEEEeeCCceEEEEeCCCCceeeeeeC
Q 013578 217 DGS--TIIASCSEGTDISIWHGKTGKLLGNVDT 247 (440)
Q Consensus 217 ~~~--~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 247 (440)
+|+ ..++.++.+|.++++|..+|+.+..+..
T Consensus 332 ~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~ 364 (582)
T 1flg_A 332 DGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF 364 (582)
T ss_dssp SSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred CCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence 454 3688899999999999999998766543
No 291
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.66 E-value=0.0046 Score=53.92 Aligned_cols=149 Identities=17% Similarity=0.223 Sum_probs=90.6
Q ss_pred CceEEEEeCCCCceeeeeeCC----CCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCcee----eeeeeeeeec--
Q 013578 228 GTDISIWHGKTGKLLGNVDTN----QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVK----AVTSVMQLKG-- 297 (440)
Q Consensus 228 d~~i~vwd~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~~~~-- 297 (440)
++.||.-++......+.+... ...+..+..+|+|++||..+ +..|.|..+..+...... ..-....+.-
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~ 118 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE 118 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCC
Confidence 366887777755444555443 23678899999999999986 568999888733211110 0001111211
Q ss_pred ----cccceEEEEEcCC---CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEE
Q 013578 298 ----HKSAVTWLCFAPN---SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKIL 370 (440)
Q Consensus 298 ----h~~~v~~~~~~p~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 370 (440)
...+|..+.|||- +..|++-..|+.|++||+..... .+..... ....+........|.+++|+.++-.|
T Consensus 119 ~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~---~P~~L~k-~~~~fg~d~~~~ev~S~~Fg~~~lTL 194 (452)
T 3pbp_A 119 EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE---KPIVLNK-PNNSFGLDARVNDITDLEFSKDGLTL 194 (452)
T ss_dssp CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS---CCEEESC-CCSEEESCSSCCCEEEEEECTTSSCE
T ss_pred cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC---CCcchhc-cccccCCCcccceEEEEEEcCCCcEE
Confidence 2577999999994 45799999999999999986221 1110100 00111222333668899999987744
Q ss_pred EE--e-cCCEEEEE
Q 013578 371 AA--T-HGSTLQWL 381 (440)
Q Consensus 371 ~~--~-~~~~i~i~ 381 (440)
.. . .+|.|+-.
T Consensus 195 Yvl~~t~~GDIYAl 208 (452)
T 3pbp_A 195 YCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEECTTSCEEEEE
T ss_pred EEEecCCCCCEEEE
Confidence 44 3 36777653
No 292
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.66 E-value=0.00081 Score=60.44 Aligned_cols=154 Identities=8% Similarity=0.058 Sum_probs=92.2
Q ss_pred cccEEEecC-CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC-CC----cEE
Q 013578 251 KNNMAAISP-NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK-DG----TLR 324 (440)
Q Consensus 251 ~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~-dg----~i~ 324 (440)
....++++| ++..|+++...+.|+.+|+.... +..+.........++|++++++|+.+.. ++ .+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~---------v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~ 208 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY---------VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNY 208 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE---------EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE---------EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEE
Confidence 457889998 46667777666777777764322 2222224456789999999996665553 22 233
Q ss_pred EEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC-CCCEEEEe-cCCEEEEEEcCCccchhhhhccccCCeEE
Q 013578 325 VWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS-DGKILAAT-HGSTLQWLSVETGKVLDTAEKAHEGEITC 402 (440)
Q Consensus 325 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~-~~~~i~i~d~~~~~~~~~~~~~h~~~v~~ 402 (440)
..+.. +... ....+ .. ......++++| +|.++++- .++.|+.++..++........+.......
T Consensus 209 ~~~~~-g~~~-----~~~~l--~~------~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~g 274 (430)
T 3tc9_A 209 ILTRE-SGFK-----VITEL--TK------GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFH 274 (430)
T ss_dssp EEEGG-GTSC-----SEEEE--EE------CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEE
T ss_pred EEeCC-Ccee-----eeeee--cc------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCccee
Confidence 33332 1110 00011 00 11234688999 66665554 36899999998765422221122245789
Q ss_pred EEecCCCCCCCCCcce-EEEEeeCCCeEEEEeCC
Q 013578 403 MAWAPKTIPMGNQQVS-VLATSSVDKKVKLWLAP 435 (440)
Q Consensus 403 v~~~~~~~~~~~~~~~-~l~t~~~Dg~i~vw~~~ 435 (440)
++|+|++ + ++++-...+.|..++.+
T Consensus 275 ia~~pdG--------~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 275 IQFHPSG--------NYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp EEECTTS--------SEEEEEETTTTEEEEEEEE
T ss_pred EEEcCCC--------CEEEEEECCCCEEEEEeCC
Confidence 9999998 6 55565667889988765
No 293
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.65 E-value=0.00037 Score=66.79 Aligned_cols=196 Identities=10% Similarity=-0.075 Sum_probs=105.7
Q ss_pred ccccCCCCCeEEEEeeCCceEEEEeCCC----CceeeeeeCCCCcccEEEecCCCCeEEEE-ecCCCEEEEEeEecCCCc
Q 013578 211 ATYGTADGSTIIASCSEGTDISIWHGKT----GKLLGNVDTNQLKNNMAAISPNGRFLAAA-AFTADVKVWEIVYSKDGL 285 (440)
Q Consensus 211 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~ 285 (440)
.+.+.+.+..++++-...+.|+.+++.. ......+.........+++.+.+..|+.+ ...+.|.++++....
T Consensus 410 gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~--- 486 (699)
T 1n7d_A 410 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--- 486 (699)
T ss_dssp CCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC---
T ss_pred EEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc---
Confidence 3444555554555555667788888764 22222222222335678888655444444 456789888864322
Q ss_pred eeeeeeeeeeeccccceEEEEEcCCCCEEEEEe-CC-CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe
Q 013578 286 VKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS-KD-GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL 363 (440)
Q Consensus 286 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~-~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 363 (440)
....+.........|+++|.+.+|+.+. .. +.|..+++..... ..+. . ........|+|
T Consensus 487 -----~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~--------~~l~----~--~~l~~PnGlav 547 (699)
T 1n7d_A 487 -----RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--------YSLV----T--ENIQWPNGITL 547 (699)
T ss_dssp -----EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC--------CEES----C--SSCSSCCCEEE
T ss_pred -----eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe--------eEEE----e--CCCCCccEEEE
Confidence 1111121223467889999665555443 22 6777777653211 0000 0 00112346999
Q ss_pred CCCCCEEEEec--CCEEEEEEcCCccchhhhh-ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 364 SSDGKILAATH--GSTLQWLSVETGKVLDTAE-KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 364 s~~g~~l~~~~--~~~i~i~d~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
+|++..|..++ .+.|..+++........+. .........|++..+ .++++....+.|..++..++
T Consensus 548 d~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~---------~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 548 DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED---------KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp CTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT---------EEEEECSTTTCEEEEETTTE
T ss_pred eccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC---------EEEEEeCCCCeEEEEEccCC
Confidence 99876555543 6789999986433222111 011233455566554 57777777788988886543
No 294
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.58 E-value=0.015 Score=49.18 Aligned_cols=150 Identities=11% Similarity=0.086 Sum_probs=91.1
Q ss_pred EEEEeeCCceEEEEeCCCCceeee-eeC----C--CCcccEEEe---cCCCCeEEEEec-------------CCCEEEEE
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGN-VDT----N--QLKNNMAAI---SPNGRFLAAAAF-------------TADVKVWE 277 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~-~~~----~--~~~v~~~~~---s~~~~~l~~~~~-------------dg~i~i~d 277 (440)
++++.-..++|..|+...+..... +.. . ...+..+.+ .|+++++++... +..+..||
T Consensus 27 ~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~D 106 (334)
T 2p9w_A 27 FYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFN 106 (334)
T ss_dssp EEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEE
T ss_pred EEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEc
Confidence 555555789999999875543322 221 0 113468899 688777776442 56788899
Q ss_pred eE---ecCCCceeeeeeeeeeecc-----------ccceEEEEEcCCCCEEEEEeCC-CcEEEEecCccccccCCCCccc
Q 013578 278 IV---YSKDGLVKAVTSVMQLKGH-----------KSAVTWLCFAPNSEQIITASKD-GTLRVWNINVRYHLDEDPKTLK 342 (440)
Q Consensus 278 ~~---~~~~~~~~~~~~~~~~~~h-----------~~~v~~~~~~p~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~ 342 (440)
+. +++.. ....+... ......++..++|+..++++.- +.|...+...... .
T Consensus 107 l~~~~tg~~~------~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~--------~ 172 (334)
T 2p9w_A 107 LPLSENSKPV------WSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV--------S 172 (334)
T ss_dssp SSCCTTCCCS------EEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE--------E
T ss_pred CCcCCCCCEE------EEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE--------e
Confidence 86 33310 11112111 1247899999999998888877 7766666553211 0
Q ss_pred cccccccCCCCCeeeeeeEEeCCCCCEEEEec-CCEEEEEEcCC
Q 013578 343 VLPIPLLDSNGATLQYDRLSLSSDGKILAATH-GSTLQWLSVET 385 (440)
Q Consensus 343 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~i~i~d~~~ 385 (440)
.+.. ...........+.+++.|+|..|++.. ++.|..+|+.+
T Consensus 173 ~~~~-~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 173 TFAW-ESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEE-CCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred eeee-cCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 0000 000111123356799999999777753 88999999884
No 295
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.58 E-value=0.0027 Score=59.44 Aligned_cols=203 Identities=11% Similarity=0.027 Sum_probs=112.1
Q ss_pred EEEEeeC-CceEEEEeC-CCCceeeeeeCCCCc-----------ccEEEecCCCCe----EEEEecCCCEEEEEeEecCC
Q 013578 221 IIASCSE-GTDISIWHG-KTGKLLGNVDTNQLK-----------NNMAAISPNGRF----LAAAAFTADVKVWEIVYSKD 283 (440)
Q Consensus 221 ~l~s~~~-d~~i~vwd~-~~~~~~~~~~~~~~~-----------v~~~~~s~~~~~----l~~~~~dg~i~i~d~~~~~~ 283 (440)
.++.++. ++.|.-+|. .+|+.+-++...... ...++++|.+.. +++++.|+.|..+|..+++
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~- 142 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE- 142 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC-
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCC-
Confidence 5666666 788999999 899988776543211 123455444444 8888889999999986665
Q ss_pred Cceeeeeeeeeeeccc--cceEE-EEEcCCCCEEEEEe------CCCcEEEEecCccccccCCCCccccccc--------
Q 013578 284 GLVKAVTSVMQLKGHK--SAVTW-LCFAPNSEQIITAS------KDGTLRVWNINVRYHLDEDPKTLKVLPI-------- 346 (440)
Q Consensus 284 ~~~~~~~~~~~~~~h~--~~v~~-~~~~p~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------- 346 (440)
..++. .+..+. ..+.+ -.+. ++ .++.++ .++.|+-+|.++++.+............
T Consensus 143 ---~~W~~--~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~ 215 (599)
T 1w6s_A 143 ---TVWKV--ENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNI 215 (599)
T ss_dssp ---EEEEE--ECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTT
T ss_pred ---EEEee--cCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccc
Confidence 11111 111110 01111 1111 44 455544 3789999999988765322111110000
Q ss_pred -----------------cccCCCCCeeeeeeEEeCCCCCEEEEec-C----------------CEEEEEEcCCccchhhh
Q 013578 347 -----------------PLLDSNGATLQYDRLSLSSDGKILAATH-G----------------STLQWLSVETGKVLDTA 392 (440)
Q Consensus 347 -----------------~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~----------------~~i~i~d~~~~~~~~~~ 392 (440)
..... +.......+++.++...+..+. + +.|..+|.++|+.+..+
T Consensus 216 ~~~~~g~~~~g~~tw~g~~~~~-gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~ 294 (599)
T 1w6s_A 216 KNPHYGQKGLGTGTWEGDAWKI-GGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGY 294 (599)
T ss_dssp TCGGGCCTTHHHHTSSTTGGGG-CCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEE
T ss_pred ccccccccccccccCCCcceec-CCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEe
Confidence 00000 0111112456666666665543 2 38999999999988766
Q ss_pred hccccC---------CeEEEEec-CCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 393 EKAHEG---------EITCMAWA-PKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 393 ~~~h~~---------~v~~v~~~-~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
...|.+ ++. +... .++ .....++.++.+|.+.+.|..+++
T Consensus 295 q~~~~d~wd~d~~~~p~l-~d~~~~~G-----~~~~~v~~~~~~G~l~~lD~~tG~ 344 (599)
T 1w6s_A 295 QKTPHDEWDYAGVNVMML-SEQKDKDG-----KARKLLTHPDRNGIVYTLDRTDGA 344 (599)
T ss_dssp ESSTTCSSCCCCCCCCEE-EEEECTTS-----CEEEEEEEECTTSEEEEEETTTCC
T ss_pred ecCCCccccccCCCccEE-EeccccCC-----cEEEEEEEECCCcEEEEEECCCCC
Confidence 433321 111 2221 232 111367778899999999998886
No 296
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.52 E-value=0.006 Score=51.56 Aligned_cols=99 Identities=13% Similarity=0.142 Sum_probs=63.6
Q ss_pred CceEEEEeCC---CCceeeeeeC-------------CCCcccEEEecCCCCeEEEEecC-CCEEEEEeEecCCCceeeee
Q 013578 228 GTDISIWHGK---TGKLLGNVDT-------------NQLKNNMAAISPNGRFLAAAAFT-ADVKVWEIVYSKDGLVKAVT 290 (440)
Q Consensus 228 d~~i~vwd~~---~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~ 290 (440)
+..|..||+. +++.+..... .......++..++|+..++++.. +.|...+.... ....+.
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~---~~~~~~ 175 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK---TVSTFA 175 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC---CEEEEE
T ss_pred CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC---EEeeee
Confidence 4568888888 7776654432 11236789999999999988877 76554443211 011111
Q ss_pred eeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 013578 291 SVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNIN 329 (440)
Q Consensus 291 ~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~ 329 (440)
............+.|+++|+|..|+....+|.+..+|++
T Consensus 176 ~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 176 WESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp ECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred ecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 001011122346799999999988888779999999988
No 297
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.49 E-value=0.043 Score=47.72 Aligned_cols=61 Identities=10% Similarity=-0.001 Sum_probs=37.0
Q ss_pred CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEe--cCCCCCCCceEEEccC---CCeEEEE
Q 013578 91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRI--NLPPGGPPTAVAFADN---ATSIVVA 156 (440)
Q Consensus 91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~--~~~~~~~v~~v~~~~~---~~~l~~~ 156 (440)
-...+.|+|.|||+++++ ..+|.|++++. ++. . .+... ..........|+|+|+ +..|.++
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~-~--~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~ 93 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGK-K--LVASFDVANVGEAGLLGLALHPEFPKKSWVYLY 93 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEECS-SCE-E--EEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCc-e--EeeccceeecCCCceeeEEeCCCCCcCCEEEEE
Confidence 456789999999985554 56698988863 222 1 11111 1112345788999987 4444443
No 298
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.48 E-value=0.04 Score=47.09 Aligned_cols=161 Identities=18% Similarity=0.209 Sum_probs=95.3
Q ss_pred EEEeeC--CceEEEEeC--CCCceeeeee-------CCCCcccEEEe--cCC-CC-eEEEEecCCCEEEEEeEecCCCce
Q 013578 222 IASCSE--GTDISIWHG--KTGKLLGNVD-------TNQLKNNMAAI--SPN-GR-FLAAAAFTADVKVWEIVYSKDGLV 286 (440)
Q Consensus 222 l~s~~~--d~~i~vwd~--~~~~~~~~~~-------~~~~~v~~~~~--s~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~ 286 (440)
+++... +++|.+|++ .+++ +..+. .....+..+++ ++. ++ ++++...+|.+..|++.....+..
T Consensus 90 ~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~ 168 (355)
T 3amr_A 90 AASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI 168 (355)
T ss_dssp EEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE
T ss_pred EEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc
Confidence 444445 678999966 3443 44441 11144566777 774 43 677888899999999976544432
Q ss_pred eeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe--C
Q 013578 287 KAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL--S 364 (440)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s 364 (440)
..+.+.++.. .+.+..+...+...+|+.+-+|.-|..++.+.... .....+ .......-...+..|++ .
T Consensus 169 -~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~-----~~~~~v--~~~~~g~l~aDvEGLai~~~ 239 (355)
T 3amr_A 169 -SGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGG-----SNGTVI--DRADGRHLTRDIEGLTIYYA 239 (355)
T ss_dssp -EEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSC-----SCCEEE--EEBSSSSBCSCEEEEEEEEC
T ss_pred -cceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCC-----CCceEE--EEecCCccccCcceEEEEec
Confidence 2335555553 45788999999888999999986666666442110 000011 01111111123556666 5
Q ss_pred CCCC-EEEEec--CCEEEEEEcC-Cccchhhh
Q 013578 365 SDGK-ILAATH--GSTLQWLSVE-TGKVLDTA 392 (440)
Q Consensus 365 ~~g~-~l~~~~--~~~i~i~d~~-~~~~~~~~ 392 (440)
++++ ||++++ ++.+.+||.. +.+.+..+
T Consensus 240 ~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 240 ADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp GGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred CCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 6666 566554 6799999997 56655554
No 299
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.47 E-value=0.013 Score=46.20 Aligned_cols=172 Identities=9% Similarity=0.035 Sum_probs=89.6
Q ss_pred EEEEeeCCceEEEEeCCCCce------eeeeeC-CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeee-
Q 013578 221 IIASCSEGTDISIWHGKTGKL------LGNVDT-NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSV- 292 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~------~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~- 292 (440)
+|+...+| +++.=....+.. ...+-. .-..+..++|+|+|.+.++ .+|.++-.+..+... ..+...
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~---~~W~~s~ 79 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDN---DNWMGRA 79 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTT---CCHHHHC
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCc---ccccccc
Confidence 56666677 666554444431 122211 1246789999999987776 677655444322110 000000
Q ss_pred eee--eccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEE
Q 013578 293 MQL--KGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKIL 370 (440)
Q Consensus 293 ~~~--~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 370 (440)
..+ .+-.. -..+.|.|+|.+.++ .||.|.-++-.+... ... ... ........-..+..+.+.|+|.+.
T Consensus 80 t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~-----~~W-l~~-a~~vg~~gw~~~~~lff~p~G~Ly 149 (236)
T 1tl2_A 80 KKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQSDT-----DNW-IAR-ATEVGSGGWSGFKFLFFHPNGYLY 149 (236)
T ss_dssp EEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCCSTT-----CCH-HHH-SEEEECSSGGGEEEEEECTTSCEE
T ss_pred cEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCcCCC-----Cce-ecc-ccEeccCCCCceEEEEECCCceEE
Confidence 011 01111 478899999987777 569888776532111 000 000 011111122356889999999999
Q ss_pred EEecCCEEEEEEcCCccchhhh-----h-ccccCCeEEEEecCCC
Q 013578 371 AATHGSTLQWLSVETGKVLDTA-----E-KAHEGEITCMAWAPKT 409 (440)
Q Consensus 371 ~~~~~~~i~i~d~~~~~~~~~~-----~-~~h~~~v~~v~~~~~~ 409 (440)
++. ++.++-....++....-+ . ...-..-.-+.|.+++
T Consensus 150 av~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G 193 (236)
T 1tl2_A 150 AVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG 193 (236)
T ss_dssp EEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred EEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence 999 888654433322211111 0 0112234557799987
No 300
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.37 E-value=0.039 Score=47.65 Aligned_cols=168 Identities=8% Similarity=0.126 Sum_probs=91.9
Q ss_pred CCceEEEEeCCCC--ceeeeee--C-----CCCcccEEEecC--CCC-eEEEEe-c--CCCEEEEEeEecCCCceeeeee
Q 013578 227 EGTDISIWHGKTG--KLLGNVD--T-----NQLKNNMAAISP--NGR-FLAAAA-F--TADVKVWEIVYSKDGLVKAVTS 291 (440)
Q Consensus 227 ~d~~i~vwd~~~~--~~~~~~~--~-----~~~~v~~~~~s~--~~~-~l~~~~-~--dg~i~i~d~~~~~~~~~~~~~~ 291 (440)
.+|.|.++|+.+. +. ..+. . .......+.+.+ ++. +|+++. . +..|.+|++..... ....
T Consensus 81 ~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~----~~~~ 155 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEK----SLLH 155 (355)
T ss_dssp -CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTT----EEEE
T ss_pred CCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCC----EEEE
Confidence 6889999998742 22 2222 1 112344555544 443 344443 2 46788998865431 2223
Q ss_pred eeeeecc-ccceEEEEEcCCCCEEEEEeC---C--------------CcEEEEecCccccccCCCCccccccccccCCCC
Q 013578 292 VMQLKGH-KSAVTWLCFAPNSEQIITASK---D--------------GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNG 353 (440)
Q Consensus 292 ~~~~~~h-~~~v~~~~~~p~~~~l~s~~~---d--------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (440)
+..+.+. -...+.+.+.++|.+.++... | |.|.-+|.. ..+... .
T Consensus 156 ~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~----------~~~~~~-------~ 218 (355)
T 3sre_A 156 LKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN----------DVRVVA-------E 218 (355)
T ss_dssp EEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT----------CCEEEE-------E
T ss_pred EeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC----------eEEEee-------c
Confidence 3444432 245789999999997777641 1 233333321 000000 0
Q ss_pred CeeeeeeEEeCCCCCEEEEec--CCEEEEEEcCC-ccch--hhhhccccCCeEEEEecC-CCCCCCCCcceEEEEeeCC
Q 013578 354 ATLQYDRLSLSSDGKILAATH--GSTLQWLSVET-GKVL--DTAEKAHEGEITCMAWAP-KTIPMGNQQVSVLATSSVD 426 (440)
Q Consensus 354 ~~~~v~~~~~s~~g~~l~~~~--~~~i~i~d~~~-~~~~--~~~~~~h~~~v~~v~~~~-~~~~~~~~~~~~l~t~~~D 426 (440)
.-..-+.++|+||++.|..++ .+.|+.|++.. ++.. ..+ ...+..-.+++.+ +| ++.+++..+
T Consensus 219 ~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~--~~~g~PDGi~vD~e~G--------~lwva~~~~ 287 (355)
T 3sre_A 219 GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL--SFDTLVDNISVDPVTG--------DLWVGCHPN 287 (355)
T ss_dssp EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSEEEEEEECTTTC--------CEEEEEESC
T ss_pred CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE--eCCCCCceEEEeCCCC--------cEEEEecCC
Confidence 011245799999999877764 68999999863 3321 112 1234567777877 46 666656544
No 301
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.35 E-value=0.023 Score=51.35 Aligned_cols=161 Identities=12% Similarity=0.086 Sum_probs=87.3
Q ss_pred cccCC-CCCeEEEEeeCCceEEEEeCCCCceeeeeeCC---CCcccEEEe-------cCCCCeEEEEecCC-C------E
Q 013578 212 TYGTA-DGSTIIASCSEGTDISIWHGKTGKLLGNVDTN---QLKNNMAAI-------SPNGRFLAAAAFTA-D------V 273 (440)
Q Consensus 212 ~~~~~-~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~---~~~v~~~~~-------s~~~~~l~~~~~dg-~------i 273 (440)
+.+.| ++..++++....+.|++.|+.++......... ......++| +++|+.|+++...+ . |
T Consensus 144 la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V 223 (496)
T 3kya_A 144 LAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSV 223 (496)
T ss_dssp EEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEE
T ss_pred EEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceE
Confidence 34455 34434455444577999999877665444332 224678999 99999777776654 2 4
Q ss_pred EEEEeEecCCCceee---eeeeeeeeccccceEEEEEcCC-CCEEEEEeCCCcEEEEecC-------cccccc----CCC
Q 013578 274 KVWEIVYSKDGLVKA---VTSVMQLKGHKSAVTWLCFAPN-SEQIITASKDGTLRVWNIN-------VRYHLD----EDP 338 (440)
Q Consensus 274 ~i~d~~~~~~~~~~~---~~~~~~~~~h~~~v~~~~~~p~-~~~l~s~~~dg~i~iwd~~-------~~~~~~----~~~ 338 (440)
.+++. ..++.... ...+..+ .....++++|+ +.++++-..++.|..+|+. ++..-. ...
T Consensus 224 ~~i~r--~~~G~~~~~~~~~~v~~~----~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 224 YIIKR--NADGTFDDRSDIQLIAAY----KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp EEEEC--CTTSCCSTTSCEEEEEEE----SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred EEEec--CCCCceeecccceeeccC----CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 45542 22122210 0112122 23457889995 4555566678889999987 332100 000
Q ss_pred CccccccccccCCCCCeeeeeeEEeCCCCCEEEEe--cCCEEEEEEc
Q 013578 339 KTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT--HGSTLQWLSV 383 (440)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~--~~~~i~i~d~ 383 (440)
..... +... +....-..++|+|+|.+|..+ ....|+.++.
T Consensus 298 g~~~~----l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 298 NTFKQ----LFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp TTEEE----EEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred cccce----eEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 00000 0000 111223579999999965554 3678888654
No 302
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.30 E-value=0.068 Score=45.96 Aligned_cols=66 Identities=14% Similarity=0.137 Sum_probs=40.7
Q ss_pred cccccccCcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeE-EecCCCCCCCceEEEccC
Q 013578 84 VNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFL-RINLPPGGPPTAVAFADN 149 (440)
Q Consensus 84 ~~~l~~H~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~~~ 149 (440)
+..+-.--..-+.|+|.|||.++++--..|.|++++...+.......+ ............|+|+|+
T Consensus 24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pd 90 (347)
T 3das_A 24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPD 90 (347)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTT
T ss_pred eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccc
Confidence 334444456788999999999877765589998887654432111000 011122356788999985
No 303
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.28 E-value=0.13 Score=48.64 Aligned_cols=179 Identities=10% Similarity=-0.069 Sum_probs=104.2
Q ss_pred eCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEE
Q 013578 226 SEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTW 304 (440)
Q Consensus 226 ~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~ 304 (440)
..++.|+.+++........+.........+++++.+..|+.+. ..+.|.+.++.... . .......-.....
T Consensus 56 ~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~----~----~~l~~~~l~~P~~ 127 (628)
T 4a0p_A 56 ISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH----R----QVLVWKDLDSPRA 127 (628)
T ss_dssp TTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT----C----EEEECSSCCCEEE
T ss_pred CCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc----E----EEEEeCCCCCccc
Confidence 3445566666654333223332234567889987766565554 45678887764322 1 1111123345689
Q ss_pred EEEcCCCCEEEEEe--CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec--CCEEEE
Q 013578 305 LCFAPNSEQIITAS--KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH--GSTLQW 380 (440)
Q Consensus 305 ~~~~p~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~i~i 380 (440)
|+++|...+|+... ..+.|...++..... ..+ .. .......+++++++..|..++ .+.|..
T Consensus 128 iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~--------~~l----~~---~~~~P~GlalD~~~~~LY~aD~~~~~I~~ 192 (628)
T 4a0p_A 128 LALDPAEGFMYWTEWGGKPKIDRAAMDGSER--------TTL----VP---NVGRANGLTIDYAKRRLYWTDLDTNLIES 192 (628)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTSCSC--------EEE----EC---SCSSEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEccCCCeEEEeCCCCCCEEEEEeCCCCce--------EEE----EC---CCCCcceEEEccccCEEEEEECCCCEEEE
Confidence 99999655555444 256777777764321 110 01 112345799999877666654 688999
Q ss_pred EEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 381 LSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 381 ~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
+|+..... ..+ .........+++..+ .+++|-...+.|...+..+++
T Consensus 193 ~d~dG~~~-~v~-~~~l~~P~glav~~~---------~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 193 SNMLGLNR-EVI-ADDLPHPFGLTQYQD---------YIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp EETTSCSC-EEE-EECCSCEEEEEEETT---------EEEEEETTTTEEEEEETTTCC
T ss_pred EcCCCCce-EEe-eccCCCceEEEEECC---------EEEEecCCCCEEEEEECCCCC
Confidence 99866443 223 233445678888764 566666667888888876654
No 304
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.26 E-value=0.045 Score=43.15 Aligned_cols=114 Identities=17% Similarity=0.070 Sum_probs=59.1
Q ss_pred ccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeee--eccccceEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 013578 252 NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQL--KGHKSAVTWLCFAPNSEQIITASKDGTLRVWNIN 329 (440)
Q Consensus 252 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~ 329 (440)
..++.|.++|.+.++ .||.|+-++-...... .+...... .+-=..+..|.|.|+|.+.+.. |+.+.-+...
T Consensus 90 F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~---~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P 162 (236)
T 1tl2_A 90 FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTD---NWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPP 162 (236)
T ss_dssp CSEEEECTTSCEEEE--ETTEEEEESCCCSTTC---CHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCC
T ss_pred ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCC---ceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCC
Confidence 478899999998888 5687776653221111 11000011 1111457899999999866665 7775432222
Q ss_pred ccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEE
Q 013578 330 VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQW 380 (440)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i 380 (440)
+.. ...-+................+.|+++|.+.++. ++.++-
T Consensus 163 ~~~-------~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~-~g~~Y~ 205 (236)
T 1tl2_A 163 VSN-------QDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ-GGKFYE 205 (236)
T ss_dssp SST-------TCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE-TTEEEE
T ss_pred CCC-------CcccccccceeccCCcceEEEEEECCCCcEEEEe-CCeEEe
Confidence 110 0000000000011111223447799999988877 775544
No 305
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.26 E-value=0.21 Score=50.72 Aligned_cols=34 Identities=21% Similarity=0.048 Sum_probs=27.8
Q ss_pred CcceeEEEEccC------CCEEEEeeC-CCcEEEEecCCCC
Q 013578 91 GDSVTGLCFSSD------GKCLATACA-DGVIRVHKLDDAS 124 (440)
Q Consensus 91 ~~~V~~l~~s~d------g~~l~t~s~-dg~v~vW~~~~~~ 124 (440)
.+.|.|+++.|. ++++|.|.. |++|+|+++.+.+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~ 593 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFE 593 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCC
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCC
Confidence 457999999863 369999996 9999999998543
No 306
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.98 E-value=0.16 Score=44.18 Aligned_cols=66 Identities=17% Similarity=0.143 Sum_probs=37.0
Q ss_pred CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeE-EecCCCCCCCceEEEccC---CCeEEEE
Q 013578 91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFL-RINLPPGGPPTAVAFADN---ATSIVVA 156 (440)
Q Consensus 91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~~~---~~~l~~~ 156 (440)
-...+.|+|.|||++|+.+...|.|++++.+........-. ............++|+|+ +..|.++
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~ 86 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLS 86 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEE
T ss_pred CCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEE
Confidence 44678999999998344455679998887432111100000 011112345678899986 4444443
No 307
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.98 E-value=0.069 Score=50.37 Aligned_cols=192 Identities=10% Similarity=-0.071 Sum_probs=105.0
Q ss_pred CCCCCeEEEEeeCCceEEEEeCCCCce-eeeeeCCCCcccEEEecCCCCeEEEEe-cCCCEEEEEeEecCCCceeeeeee
Q 013578 215 TADGSTIIASCSEGTDISIWHGKTGKL-LGNVDTNQLKNNMAAISPNGRFLAAAA-FTADVKVWEIVYSKDGLVKAVTSV 292 (440)
Q Consensus 215 ~~~~~~~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~ 292 (440)
.+.+..++++-...+.|..+++..... ...+.........+++++.++.|+.+. ..+.|.+.++.... ..
T Consensus 48 ~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~--------~~ 119 (619)
T 3s94_A 48 VFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL--------RK 119 (619)
T ss_dssp ETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--------CE
T ss_pred EeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC--------EE
Confidence 444454566656667788888764422 222333334577899999666555554 56788888874322 11
Q ss_pred eeeeccccceEEEEEcCCCCEEEEEeC--CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEE
Q 013578 293 MQLKGHKSAVTWLCFAPNSEQIITASK--DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKIL 370 (440)
Q Consensus 293 ~~~~~h~~~v~~~~~~p~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 370 (440)
......-.....|+++|.+.+|+.... .+.|...++..... ..+ .. ........+++++++..|
T Consensus 120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~--------~~l----~~--~~~~~P~Glald~~~~~L 185 (619)
T 3s94_A 120 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR--------FII----IN--SEIYWPNGLTLDYEEQKL 185 (619)
T ss_dssp EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC--------EEE----EC--SSCSSEEEEEEETTTTEE
T ss_pred EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce--------EEE----Ee--CCCCCCcEEEEEccCCEE
Confidence 111123345678999997655554442 35666666653211 000 00 011224579999987766
Q ss_pred EEec--CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 371 AATH--GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 371 ~~~~--~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
..++ .+.|..++.......... .+......+|++..+ .++++-...+.|...+..+++
T Consensus 186 Y~aD~~~~~I~~~~~dG~~~~~~~-~~~~~~P~gi~~~~~---------~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 186 YWADAKLNFIHKSNLDGTNRQAVV-KGSLPHPFALTLFED---------ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp EEEETTTCCEEEESSSCCEEC----------CCCEEESSS---------EEEEECTTTCSEEEEESSSCC
T ss_pred EEEeCCCCeEEEecCCCCccEEEE-eCCCCCceEEEEeCC---------EEEEecCCCCEEEEEECCCCc
Confidence 6554 578888888654333222 222233456777665 466666667778888876654
No 308
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.85 E-value=0.032 Score=48.76 Aligned_cols=74 Identities=14% Similarity=0.122 Sum_probs=57.2
Q ss_pred eeeEEeCCCCCEEEEecCCEEEEEEcCCccchh------------hhhcc-----ccCCeEEEEecCCCCCCCCCcceEE
Q 013578 358 YDRLSLSSDGKILAATHGSTLQWLSVETGKVLD------------TAEKA-----HEGEITCMAWAPKTIPMGNQQVSVL 420 (440)
Q Consensus 358 v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~------------~~~~~-----h~~~v~~v~~~~~~~~~~~~~~~~l 420 (440)
+..+..+|+|.+||..++..|.|..+..+.... .+.-+ ...+|..+.|||-+ ..+..|
T Consensus 68 i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~-----~~ds~L 142 (452)
T 3pbp_A 68 TFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKS-----YRDSCI 142 (452)
T ss_dssp TCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTB-----GGGCEE
T ss_pred eeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEecccc-----CCCCeE
Confidence 567999999999999999999999887432110 11101 24679999999987 444689
Q ss_pred EEeeCCCeEEEEeCCC
Q 013578 421 ATSSVDKKVKLWLAPS 436 (440)
Q Consensus 421 ~t~~~Dg~i~vw~~~~ 436 (440)
++-..|+.||+||+..
T Consensus 143 VVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 143 VVLKEDDTITMFDILN 158 (452)
T ss_dssp EEEETTSCEEEEETTC
T ss_pred EEEecCCEEEEEEccc
Confidence 9999999999999986
No 309
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.77 E-value=0.38 Score=45.44 Aligned_cols=139 Identities=10% Similarity=-0.018 Sum_probs=73.2
Q ss_pred CCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec--CCCEEEEEeEecCCCceeeeeeeeeeeccccceEE
Q 013578 227 EGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF--TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTW 304 (440)
Q Consensus 227 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~ 304 (440)
..+.|.+.++........+...-.....++++|....|+.... .+.|...++.... ...+...-.....
T Consensus 100 ~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~---------~~~l~~~~~~P~G 170 (628)
T 4a0p_A 100 GTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE---------RTTLVPNVGRANG 170 (628)
T ss_dssp TTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS---------CEEEECSCSSEEE
T ss_pred CCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc---------eEEEECCCCCcce
Confidence 3445555555432221112122334578999987666666653 3455555543221 1111123456789
Q ss_pred EEEcCCCCEEEEE-eCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe-cCCEEEEEE
Q 013578 305 LCFAPNSEQIITA-SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-HGSTLQWLS 382 (440)
Q Consensus 305 ~~~~p~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~i~i~d 382 (440)
|++++++..|+.+ ...+.|...|+..... ..+ .....+ ...+++.. +.++.+- ..+.|...|
T Consensus 171 lalD~~~~~LY~aD~~~~~I~~~d~dG~~~--------~v~----~~~l~~---P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 171 LTIDYAKRRLYWTDLDTNLIESSNMLGLNR--------EVI----ADDLPH---PFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSC--------EEE----EECCSC---EEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred EEEccccCEEEEEECCCCEEEEEcCCCCce--------EEe----eccCCC---ceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 9999977666555 4567899999874321 111 011112 22466654 3333332 367888888
Q ss_pred cCCccchh
Q 013578 383 VETGKVLD 390 (440)
Q Consensus 383 ~~~~~~~~ 390 (440)
..+|+...
T Consensus 235 k~tg~~~~ 242 (628)
T 4a0p_A 235 KTSGQNRT 242 (628)
T ss_dssp TTTCCSCE
T ss_pred CCCCCceE
Confidence 77765433
No 310
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.63 E-value=0.25 Score=41.58 Aligned_cols=190 Identities=11% Similarity=0.121 Sum_probs=109.6
Q ss_pred CCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee
Q 013578 215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ 294 (440)
Q Consensus 215 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 294 (440)
+|... .++.-. ..++.++|+++.+.++.....+ +|..=.|-. .+.|+..+ +..|+-|++.... . +...
T Consensus 75 nP~~~-ViALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis-~~~L~lVT-~taVyHWs~~~~s-~------P~kv 142 (365)
T 2xzh_A 75 NPASK-VIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWIS-LNTVALVT-DNAVYHWSMEGES-Q------PVKM 142 (365)
T ss_dssp CSSSS-EEEEEE-TTEEEEEETTTTEEEEEEECSS-CEEEEEECS-SSEEEEEE-SSEEEEEESSTTC-C------CEEE
T ss_pred CCCcc-EEEEec-CCeEEEechHHhhhhcceecCC-ccEEEEecC-CCeEEEEc-CCcEEEEcccCCC-C------Ccee
Confidence 45554 555444 6789999999999988887754 344334433 34455544 5679999985422 1 2222
Q ss_pred eecc----ccceEEEEEcCCCCEEEEEeC-------CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe
Q 013578 295 LKGH----KSAVTWLCFAPNSEQIITASK-------DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL 363 (440)
Q Consensus 295 ~~~h----~~~v~~~~~~p~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 363 (440)
+..| ...|..-..+++.++++..+- .|.+.+|..+.+... ...+|......+.+
T Consensus 143 FdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ---------------~ieGhaa~F~~~~~ 207 (365)
T 2xzh_A 143 FDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ---------------PIEGHAASFAQFKM 207 (365)
T ss_dssp EECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE---------------EECCSEEEEEEECC
T ss_pred eecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccc---------------eeeeeeeeeEEEec
Confidence 3222 356888888999998765542 367888888754321 11244333322222
Q ss_pred CCC---CCEEEEec----CCEEEEEEcCCc---cchhh------hh--ccccCCeEEEEecCCCCCCCCCcceEEEEeeC
Q 013578 364 SSD---GKILAATH----GSTLQWLSVETG---KVLDT------AE--KAHEGEITCMAWAPKTIPMGNQQVSVLATSSV 425 (440)
Q Consensus 364 s~~---g~~l~~~~----~~~i~i~d~~~~---~~~~~------~~--~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~ 425 (440)
.-+ ..+++.+. ++.+++.++... ..... +. .+-.+-..++..++.. ..+..-..
T Consensus 208 ~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~ky--------gviyviTK 279 (365)
T 2xzh_A 208 EGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH--------DVVFLITK 279 (365)
T ss_dssp TTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTT--------TEEEEEET
T ss_pred CCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccC--------CEEEEEeC
Confidence 211 11333332 368999988443 11100 00 1123344556666554 57777788
Q ss_pred CCeEEEEeCCCCCC
Q 013578 426 DKKVKLWLAPSLES 439 (440)
Q Consensus 426 Dg~i~vw~~~~~~~ 439 (440)
-|.|.+||+.++.+
T Consensus 280 ~G~ihlyDleTgt~ 293 (365)
T 2xzh_A 280 YGYIHLYDLETGTC 293 (365)
T ss_dssp TSEEEEEETTTCCE
T ss_pred CcEEEEEEcccCcE
Confidence 99999999999864
No 311
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.43 E-value=0.34 Score=40.80 Aligned_cols=204 Identities=9% Similarity=0.110 Sum_probs=112.2
Q ss_pred EEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccccccc
Q 013578 97 LCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAIST 176 (440)
Q Consensus 97 l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 176 (440)
.-.+|..+.||-=. ..+++|+|+++.... ..... ..+|.-=.|..+ +.|+.++. ..++.|+.+...
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~kl----ks~~~--~e~VvfWkWis~-~~L~lVT~----taVyHWs~~~~s-- 137 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKM----KAHTM--TDDVTFWKWISL-NTVALVTD----NAVYHWSMEGES-- 137 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEE----EEEEC--SSCEEEEEECSS-SEEEEEES----SEEEEEESSTTC--
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhh----cceec--CCccEEEEecCC-CeEEEEcC----CcEEEEcccCCC--
Confidence 33577777666554 578999999976421 11111 245555566544 45555553 367777654311
Q ss_pred ccccccCCCCCCceeeccccc-ccceeEEEeecccccccCCCCCeEEEEee------CCceEEEEeCCCCceeeeeeCCC
Q 013578 177 NEGKQQSKLPGPEIKWEHHKV-HDKRAILTLFGASATYGTADGSTIIASCS------EGTDISIWHGKTGKLLGNVDTNQ 249 (440)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~~------~d~~i~vwd~~~~~~~~~~~~~~ 249 (440)
.+...++.+.. ...+++.... +++.+.++++|- -.|.+.+|..+.+ ..+.+++|.
T Consensus 138 ----------~P~kvFdR~~~L~~~QIInY~~-------d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGha 199 (365)
T 2xzh_A 138 ----------QPVKMFDRHSSLAGCQIINYRT-------DAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHA 199 (365)
T ss_dssp ----------CCEEEEECCGGGTTCEEEEEEE-------CTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSE
T ss_pred ----------CCceeeecchhcccceEEEEEE-------CCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeee
Confidence 22222332221 1222222222 566665555553 2467889987744 456666664
Q ss_pred CcccEEEecCCC-----CeEEEEec---CCCEEEEEeEecCCCc-eeeeeeee---eeeccccceEEEEEcCCCCEEEEE
Q 013578 250 LKNNMAAISPNG-----RFLAAAAF---TADVKVWEIVYSKDGL-VKAVTSVM---QLKGHKSAVTWLCFAPNSEQIITA 317 (440)
Q Consensus 250 ~~v~~~~~s~~~-----~~l~~~~~---dg~i~i~d~~~~~~~~-~~~~~~~~---~~~~h~~~v~~~~~~p~~~~l~s~ 317 (440)
.... .+-.+| ++|+.+.. .++++|.++.....+. ....+.+. .-..-.+-..++..++.-..++.-
T Consensus 200 a~F~--~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyvi 277 (365)
T 2xzh_A 200 ASFA--QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 277 (365)
T ss_dssp EEEE--EECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred eeeE--EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEE
Confidence 3322 222222 23444433 2588888885431111 11111111 111234566788999888889999
Q ss_pred eCCCcEEEEecCccccc
Q 013578 318 SKDGTLRVWNINVRYHL 334 (440)
Q Consensus 318 ~~dg~i~iwd~~~~~~~ 334 (440)
+.-|.|.+||++++.++
T Consensus 278 TK~G~ihlyDleTgt~i 294 (365)
T 2xzh_A 278 TKYGYIHLYDLETGTCI 294 (365)
T ss_dssp ETTSEEEEEETTTCCEE
T ss_pred eCCcEEEEEEcccCcEE
Confidence 99999999999988765
No 312
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.27 E-value=0.61 Score=41.99 Aligned_cols=64 Identities=17% Similarity=0.156 Sum_probs=38.0
Q ss_pred CcceeEEEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecC-----CCCCCCceEEEccC---CCeEEEE
Q 013578 91 GDSVTGLCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINL-----PPGGPPTAVAFADN---ATSIVVA 156 (440)
Q Consensus 91 ~~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~-----~~~~~v~~v~~~~~---~~~l~~~ 156 (440)
-...+.|+|.|||+++++-...+.|++++..++... ....... ...+.+..|+|+|+ +..|.++
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~--~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~ 97 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVK--TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE--EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe--EEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence 446789999999987776544456877765443322 1111111 12345668999996 5554444
No 313
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.27 E-value=0.44 Score=40.27 Aligned_cols=184 Identities=6% Similarity=0.072 Sum_probs=90.0
Q ss_pred EEEEeeCC----ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecC------CCEEEEEeEecCCCceeeee
Q 013578 221 IIASCSEG----TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFT------ADVKVWEIVYSKDGLVKAVT 290 (440)
Q Consensus 221 ~l~s~~~d----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~ 290 (440)
+++.|+.+ ..+.+||..+.+-...-..........+..-++++++.|+.+ ..+.+||..... +.
T Consensus 58 lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~------W~ 131 (306)
T 3ii7_A 58 VYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTES------WH 131 (306)
T ss_dssp EEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTE------EE
T ss_pred EEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCc------eE
Confidence 56666644 568899988775432222111111122222367788888765 357778764321 22
Q ss_pred eeeeeeccccceEEEEEcCCCCEEEEEeC---------CCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeE
Q 013578 291 SVMQLKGHKSAVTWLCFAPNSEQIITASK---------DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRL 361 (440)
Q Consensus 291 ~~~~~~~h~~~v~~~~~~p~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 361 (440)
.+..+......-..+.+ ++..++.|+. -..+.+||+.+..-... ...+ .....+. .+
T Consensus 132 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~-----~~~p---~~r~~~~----~~ 197 (306)
T 3ii7_A 132 TKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTEL-----CPMI---EARKNHG----LV 197 (306)
T ss_dssp EECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEE-----CCCS---SCCBSCE----EE
T ss_pred eCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEEC-----CCcc---chhhcce----EE
Confidence 22222211111122222 5666666653 34588888876532211 0000 0111111 12
Q ss_pred EeCCCCCEEEEec-C-----CEEEEEEcCCcc--chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCC-----Ce
Q 013578 362 SLSSDGKILAATH-G-----STLQWLSVETGK--VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD-----KK 428 (440)
Q Consensus 362 ~~s~~g~~l~~~~-~-----~~i~i~d~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D-----g~ 428 (440)
.+ ++++++.|. + ..+.+||..+.+ .+..+.. .......+.+ ++ .+++.||.+ ..
T Consensus 198 ~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~--------~i~v~GG~~~~~~~~~ 264 (306)
T 3ii7_A 198 FV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPW-KGVTVKCAAV--GS--------IVYVLAGFQGVGRLGH 264 (306)
T ss_dssp EE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSC-CBSCCEEEEE--TT--------EEEEEECBCSSSBCCE
T ss_pred EE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCC-CccceeEEEE--CC--------EEEEEeCcCCCeeeee
Confidence 22 566666543 2 568899988764 3322221 1112223333 33 688888854 46
Q ss_pred EEEEeCCCC
Q 013578 429 VKLWLAPSL 437 (440)
Q Consensus 429 i~vw~~~~~ 437 (440)
+.+||+.+.
T Consensus 265 ~~~yd~~~~ 273 (306)
T 3ii7_A 265 ILEYNTETD 273 (306)
T ss_dssp EEEEETTTT
T ss_pred EEEEcCCCC
Confidence 788887654
No 314
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.16 E-value=0.47 Score=40.08 Aligned_cols=104 Identities=6% Similarity=-0.009 Sum_probs=53.1
Q ss_pred EEEEeeC--CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecC----CCEEEEEeEecCCCceeeeeeeee
Q 013578 221 IIASCSE--GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFT----ADVKVWEIVYSKDGLVKAVTSVMQ 294 (440)
Q Consensus 221 ~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~ 294 (440)
+++.|+. ...+.+||..+.+-...-..........+..-++.+++.|+.+ ..+.+||..... +..+..
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~------W~~~~~ 87 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDS------WYSKLG 87 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTE------EEEEEC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCe------EEECCC
Confidence 5555554 3568999998765432211111111122222467777888755 456777754321 222222
Q ss_pred eeccccceEEEEEcCCCCEEEEEeCC------CcEEEEecCccc
Q 013578 295 LKGHKSAVTWLCFAPNSEQIITASKD------GTLRVWNINVRY 332 (440)
Q Consensus 295 ~~~h~~~v~~~~~~p~~~~l~s~~~d------g~i~iwd~~~~~ 332 (440)
+......-..+.+ ++..++.|+.+ ..+.+||..+..
T Consensus 88 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 129 (306)
T 3ii7_A 88 PPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTES 129 (306)
T ss_dssp CSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred CCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence 2211122222233 66777777755 458888887653
No 315
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.16 E-value=0.3 Score=44.03 Aligned_cols=61 Identities=16% Similarity=0.200 Sum_probs=34.7
Q ss_pred cccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee------ccccceEEEEEcCC---CCEEEEE
Q 013578 251 KNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK------GHKSAVTWLCFAPN---SEQIITA 317 (440)
Q Consensus 251 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------~h~~~v~~~~~~p~---~~~l~s~ 317 (440)
....++|.|+|+++++-...+.|++++...+ ... .+..+. ........|+|+|+ +.+|+.+
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g---~~~---~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~ 97 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESG---SVK---TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTC---CEE---EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCC---cEe---EEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence 4568999999986665443346777753211 111 111121 12456789999995 4444433
No 316
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.12 E-value=0.51 Score=39.70 Aligned_cols=182 Identities=5% Similarity=0.057 Sum_probs=88.4
Q ss_pred EEEEeeCC-----ceEEEEeCCCCc---eee--eeeCCCCcccEEEecCCCCeEEEEecCC-----CEEEEEeEecCCCc
Q 013578 221 IIASCSEG-----TDISIWHGKTGK---LLG--NVDTNQLKNNMAAISPNGRFLAAAAFTA-----DVKVWEIVYSKDGL 285 (440)
Q Consensus 221 ~l~s~~~d-----~~i~vwd~~~~~---~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~ 285 (440)
+++.|+.+ ..+.+||+.+.+ -.. .+........++. .++++++.|+.++ .+.+||+....
T Consensus 65 l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~--- 139 (301)
T 2vpj_A 65 IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQ--- 139 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTE---
T ss_pred EEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCe---
Confidence 55666543 458999988765 322 2222111122222 3677788877543 46677753321
Q ss_pred eeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCC-----CcEEEEecCccccccCCCCccccccccccCCCCCeeeeee
Q 013578 286 VKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKD-----GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDR 360 (440)
Q Consensus 286 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 360 (440)
+..+..+......-..+.+ ++..++.|+.+ ..+.+||+.+..-... ...+ .....+. .
T Consensus 140 ---W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-----~~~p---~~r~~~~----~ 202 (301)
T 2vpj_A 140 ---WSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV-----TPMA---TKRSGAG----V 202 (301)
T ss_dssp ---EEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE-----CCCS---SCCBSCE----E
T ss_pred ---EEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeC-----CCCC---cccccce----E
Confidence 2222222211111222222 66777777654 3588888876533211 0011 0111111 1
Q ss_pred EEeCCCCCEEEEec-C-----CEEEEEEcCCccc--hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCC-----C
Q 013578 361 LSLSSDGKILAATH-G-----STLQWLSVETGKV--LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD-----K 427 (440)
Q Consensus 361 ~~~s~~g~~l~~~~-~-----~~i~i~d~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D-----g 427 (440)
+. -++++++.|. + ..+.+||..+.+- +..+.... .....+.+ ++ .+++.||.+ .
T Consensus 203 ~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r-~~~~~~~~--~~--------~i~v~GG~~~~~~~~ 269 (301)
T 2vpj_A 203 AL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPR-CYVGATVL--RG--------RLYAIAGYDGNSLLS 269 (301)
T ss_dssp EE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCC-BSCEEEEE--TT--------EEEEECCBCSSSBEE
T ss_pred EE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcc-cceeEEEE--CC--------EEEEEcCcCCCcccc
Confidence 22 2566666543 2 5789999987653 22221111 11122222 33 688888766 4
Q ss_pred eEEEEeCCCC
Q 013578 428 KVKLWLAPSL 437 (440)
Q Consensus 428 ~i~vw~~~~~ 437 (440)
.+.+||+.+.
T Consensus 270 ~v~~yd~~~~ 279 (301)
T 2vpj_A 270 SIECYDPIID 279 (301)
T ss_dssp EEEEEETTTT
T ss_pred cEEEEcCCCC
Confidence 5778887654
No 317
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.96 E-value=1.7 Score=44.30 Aligned_cols=280 Identities=13% Similarity=0.094 Sum_probs=141.2
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEecCCCCCc--c-eeeEEecCCCCCCCceEEEccC----CCeEEEEeecCCcceEEee
Q 013578 96 GLCFSSDGKCLATACADGVIRVHKLDDASSK--S-FKFLRINLPPGGPPTAVAFADN----ATSIVVATHNLSGCSLYMY 168 (440)
Q Consensus 96 ~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~--~-~~~~~~~~~~~~~v~~v~~~~~----~~~l~~~~~~~~~~~~~~~ 168 (440)
++++- ++.+|+.||..|.=.+|.+...... . .... .....-++|.+++.... ...+++++..+....+.+.
T Consensus 331 sl~~l-~~g~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~-~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~l 408 (1158)
T 3ei3_A 331 CLTYL-DNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAM-ETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRII 408 (1158)
T ss_dssp EEEEC-STTEEEEECSSSCEEEEEECSSCCTTSCCEEEE-EEECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEE
T ss_pred EEEEE-CCCEEEEEEecCCcEEEEEecCCCCccceEEeE-eeecCcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEE
Confidence 34444 3448889999888888888754321 1 1222 22344478888877542 3477777777666677665
Q ss_pred ccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCC
Q 013578 169 GEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN 248 (440)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 248 (440)
...-....... ..+++....|...... ....+. +++.+..+.+ .++.+. ++.+..+...
T Consensus 409 r~Gi~~~~~~~---~~l~gv~~iWtl~~~~---------------~~~~~~-yLvlS~~~~T-~Vl~i~-~e~veev~~~ 467 (1158)
T 3ei3_A 409 RNGIGIHEHAS---IDLPGIKGLWPLRSDP---------------NRETDD-TLVLSFVGQT-RVLMLN-GEEVEETELM 467 (1158)
T ss_dssp EESBCEEEEEE---ECCCSCCEEEEECCCS---------------SCSSCC-EEEEEETTEE-EEEEEE-TTEEEEECCT
T ss_pred ecCCCEEEEEe---ecCCCccEEEEEeecC---------------CCCCCC-EEEEECCCCe-EEEEEe-CCcccccccc
Confidence 44333221111 1233334455443210 011223 5555555554 444442 2233332211
Q ss_pred CCcccEEEecCCCCeEEEEec---------CCCEEEEEeEecCCCceeeeeeeeeeecc-ccceEEEEEcCCCCEEEEEe
Q 013578 249 QLKNNMAAISPNGRFLAAAAF---------TADVKVWEIVYSKDGLVKAVTSVMQLKGH-KSAVTWLCFAPNSEQIITAS 318 (440)
Q Consensus 249 ~~~v~~~~~s~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~~ 318 (440)
.|..+...|+++.. ...|++.+..... .+..+... ...|...+.+ +.+++.++
T Consensus 468 -------gf~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~--------~~~~w~~p~~~~I~~As~n--~~~vvva~ 530 (1158)
T 3ei3_A 468 -------GFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKA--------LVSEWKEPQAKNISVASCN--SSQVVVAV 530 (1158)
T ss_dssp -------TCCSSSCEEEEEEETTTEEEEEESSCEEEEESSSCC--------EEEEECCTTCCCCCEEEEC--SSEEEEEE
T ss_pred -------cccCCCCcEEEEEcCCCeEEEEecCEEEEEECCCCe--------EEEEEECCCCCEEEEEEeC--CCEEEEEE
Confidence 12222333333321 2335555532211 23333322 2356666654 34666664
Q ss_pred CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC------CCEEEEec--CCEEEEEEcCCccchh
Q 013578 319 KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD------GKILAATH--GSTLQWLSVETGKVLD 390 (440)
Q Consensus 319 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------g~~l~~~~--~~~i~i~d~~~~~~~~ 390 (440)
++.+.++.+..+.. .. ... .. -...|.|+++.|. ++++++|. |+.++|+++.+.+.+.
T Consensus 531 -g~~l~~fel~~~~L-~~----~~~-----~~---l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~ 596 (1158)
T 3ei3_A 531 -GRALYYLQIHPQEL-RQ----ISH-----TE---MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLH 596 (1158)
T ss_dssp -TTEEEEEEEETTEE-EE----EEE-----EE---CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEE
T ss_pred -CCEEEEEEeeCCce-ee----ecc-----cC---CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEE
Confidence 57788887764321 00 000 00 1234788888764 36888875 8999999998766553
Q ss_pred hhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 391 TAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 391 ~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
...-+......++.+..-+ + ..+|..|-.||.+..+.++
T Consensus 597 ~~~L~~~~~p~si~l~~~~-----~-~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 597 KEMLGGEIIPRSILMTTFE-----S-SHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp EEECCSSCCEEEEEEEEET-----T-EEEEEEEETTSEEEEEEEC
T ss_pred EEECCCCCCCcEEEEEEeC-----C-CcEEEEEeCCCeEEEEEEc
Confidence 3211112233444333211 1 1688899899998776654
No 318
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.93 E-value=0.58 Score=39.59 Aligned_cols=176 Identities=12% Similarity=0.070 Sum_probs=83.6
Q ss_pred ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecC-----CCEEEEEeEecCCCceeeeeeeeeeeccccceE
Q 013578 229 TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFT-----ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVT 303 (440)
Q Consensus 229 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~ 303 (440)
..+.+||+.+.+-...-..........+..-++++++.|+.+ ..+.+||+.... +..+..+......-.
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~------W~~~~~~p~~r~~~~ 163 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDE------WHLVAPMLTRRIGVG 163 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTE------EEECCCCSSCCBSCE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCe------EeECCCCCccccceE
Confidence 358889988765332211111111111222367777777654 356777764321 222222221111222
Q ss_pred EEEEcCCCCEEEEEeCC-----CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEec-C--
Q 013578 304 WLCFAPNSEQIITASKD-----GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATH-G-- 375 (440)
Q Consensus 304 ~~~~~p~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~-- 375 (440)
.+.+ ++.+++.|+.+ ..+.+||+.+..-... ...+ .....+ ..+.+ ++++++.|. +
T Consensus 164 ~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-----~~~p---~~r~~~----~~~~~--~~~iyv~GG~~~~ 227 (308)
T 1zgk_A 164 VAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI-----TAMN---TIRSGA----GVCVL--HNCIYAAGGYDGQ 227 (308)
T ss_dssp EEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC-----CCCS---SCCBSC----EEEEE--TTEEEEECCBCSS
T ss_pred EEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC-----CCCC---Cccccc----eEEEE--CCEEEEEeCCCCC
Confidence 2333 56677777654 4588888876533211 0011 011111 11222 566666553 2
Q ss_pred ---CEEEEEEcCCccc--hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCC-----CeEEEEeCCCC
Q 013578 376 ---STLQWLSVETGKV--LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD-----KKVKLWLAPSL 437 (440)
Q Consensus 376 ---~~i~i~d~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D-----g~i~vw~~~~~ 437 (440)
..+.+||+.+.+- +..+.... .....+ .. ++ .+++.||.+ ..+.+||+.+.
T Consensus 228 ~~~~~v~~yd~~~~~W~~~~~~p~~r-~~~~~~-~~-~~--------~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 228 DQLNSVERYDVETETWTFVAPMKHRR-SALGIT-VH-QG--------RIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp SBCCCEEEEETTTTEEEECCCCSSCC-BSCEEE-EE-TT--------EEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CccceEEEEeCCCCcEEECCCCCCCc-cceEEE-EE-CC--------EEEEEcCcCCCcccceEEEEcCCCC
Confidence 5789999887642 22221111 111222 22 33 688888764 35778887654
No 319
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.89 E-value=1.2 Score=41.99 Aligned_cols=158 Identities=12% Similarity=-0.019 Sum_probs=82.2
Q ss_pred cceeEEEEccCCCE-EEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecc
Q 013578 92 DSVTGLCFSSDGKC-LATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGE 170 (440)
Q Consensus 92 ~~V~~l~~s~dg~~-l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~ 170 (440)
.....|++.+.+.. .++-...+.|.+.+++..... .+ ....-.....|++.|.+..|..+.... ...+...+.
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~---~l--~~~~l~~P~~Iavdp~~g~ly~tD~g~-~~~I~r~~~ 157 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK---VL--FWQELDQPRAIALDPSSGFMYWTDWGE-VPKIERAGM 157 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EE--ECSSCSCCCCEEEETTTTEEEEEECSS-SCEEEEEET
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE---EE--EeCCCCCCceEEEecCCCeEEEeccCC-CCEEEEEEC
Confidence 46889999985554 445556788999998754321 11 112335688999999877666654321 123332222
Q ss_pred ccccccccccccCCCCCCceeecccccccceeEE--EeecccccccCCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCC
Q 013578 171 EKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAIL--TLFGASATYGTADGSTIIASCSEGTDISIWHGKTGKLLGNVDTN 248 (440)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 248 (440)
.... ...+. ....+..+.+.++++.+.++-...+.|..+|+............
T Consensus 158 dG~~-------------------------~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~ 212 (619)
T 3s94_A 158 DGSS-------------------------RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS 212 (619)
T ss_dssp TSCS-------------------------CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC------
T ss_pred CCCc-------------------------eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC
Confidence 1110 00000 11123334445665646666666777988888643222222212
Q ss_pred CCcccEEEecCCCCeEEEEecCCCEEEEEeEec
Q 013578 249 QLKNNMAAISPNGRFLAAAAFTADVKVWEIVYS 281 (440)
Q Consensus 249 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 281 (440)
......+++..+ ..+++-..++.|...|...+
T Consensus 213 ~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 213 LPHPFALTLFED-ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp ---CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred CCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence 223345676655 33334345677877776444
No 320
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.88 E-value=0.27 Score=42.66 Aligned_cols=149 Identities=14% Similarity=0.144 Sum_probs=74.4
Q ss_pred cccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceee-eeee-eeeeccccceEEEEEcCC---CCEEEEE-eC-----
Q 013578 251 KNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKA-VTSV-MQLKGHKSAVTWLCFAPN---SEQIITA-SK----- 319 (440)
Q Consensus 251 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~-~~~~~h~~~v~~~~~~p~---~~~l~s~-~~----- 319 (440)
....++|.|+|+.|+++...|.|++++.. +.... ...+ ............|+++|+ +..|+.+ +.
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~----g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG----KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT----TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC----CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 45789999999845566678988888731 11100 0001 011122345789999995 4444433 32
Q ss_pred --CCcEEEEecCccccccCCCCccccc--cccccCCCCCeeeeeeEEeCCCCCEEEEe-c-------------CCEEEEE
Q 013578 320 --DGTLRVWNINVRYHLDEDPKTLKVL--PIPLLDSNGATLQYDRLSLSSDGKILAAT-H-------------GSTLQWL 381 (440)
Q Consensus 320 --dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~-------------~~~i~i~ 381 (440)
...|..|++...... ....+.+ ..+......| .-..++|.|||.+.++. + .+.|.-+
T Consensus 95 ~~~~~v~r~~~~~~~~~---~~~~~~i~~~~p~~~~~~h--~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri 169 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSK---VTDFRTVFRQMPKLSTGNH--FGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRL 169 (353)
T ss_dssp CEEEEEEEEEECTTSSB---EEEEEEEEECSSCCBSSSC--CCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEE
T ss_pred CceeEEEEEEECCCCCC---CCceEEEEEECCCCCCCcc--cCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEE
Confidence 224666665422100 0000000 0110001112 13469999999766653 3 1467777
Q ss_pred EcCCcc------------chhhhhccccCCeEEEEecC-CC
Q 013578 382 SVETGK------------VLDTAEKAHEGEITCMAWAP-KT 409 (440)
Q Consensus 382 d~~~~~------------~~~~~~~~h~~~v~~v~~~~-~~ 409 (440)
+....- ....+..+| .....++|+| ++
T Consensus 170 ~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g 209 (353)
T 2g8s_A 170 TDQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSN 209 (353)
T ss_dssp ETTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTT
T ss_pred CCCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCC
Confidence 765320 112221233 3478899999 55
No 321
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.81 E-value=0.96 Score=46.36 Aligned_cols=165 Identities=12% Similarity=0.154 Sum_probs=87.3
Q ss_pred ceEEEEeCCC-CceeeeeeCC----CCcccEEEecCCCCeEEEEe-------cCCCEEEEEeEecCCCceeeeeeeeeee
Q 013578 229 TDISIWHGKT-GKLLGNVDTN----QLKNNMAAISPNGRFLAAAA-------FTADVKVWEIVYSKDGLVKAVTSVMQLK 296 (440)
Q Consensus 229 ~~i~vwd~~~-~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 296 (440)
..|+.|++.. ..+++.+..| ...|.....+++.+|++..+ -.|.+.+|...... ...+.
T Consensus 125 ~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~---------sQ~ie 195 (1630)
T 1xi4_A 125 NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV---------SQPIE 195 (1630)
T ss_pred CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc---------chhhh
Confidence 3499999863 2344444333 34456667788889887654 35788999875443 34456
Q ss_pred ccccceEEEEEc--CC-CCEEEEEeC---CCcEEEEecCcc-ccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-
Q 013578 297 GHKSAVTWLCFA--PN-SEQIITASK---DGTLRVWNINVR-YHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK- 368 (440)
Q Consensus 297 ~h~~~v~~~~~~--p~-~~~l~s~~~---dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~- 368 (440)
||-+.-..+... +. ...++.+.. .+.+.|-++... ........ +...+..........+| .+..|+.-.
T Consensus 196 gha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~k--k~~~~~~~~~~~~Dfpv-~~~vs~k~g~ 272 (1630)
T 1xi4_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK--KAVDVFFPPEAQNDFPV-AMQISEKHDV 272 (1630)
T ss_pred HhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcc--ccccccCCcccccCcce-EEEeccccCE
Confidence 665544444332 11 122332221 268888888542 11000111 11111111111122222 466666544
Q ss_pred EEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEec
Q 013578 369 ILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWA 406 (440)
Q Consensus 369 ~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~ 406 (440)
..+....|.+++||+.||.++..-. -....|...+-+
T Consensus 273 iy~itk~G~~~~~d~~t~~~i~~~r-is~~~iF~~~~~ 309 (1630)
T 1xi4_A 273 VFLITKYGYIHLYDLETGTCIYMNR-ISGETIFVTAPH 309 (1630)
T ss_pred EEEEecCceEEEEecccchhhhhcc-ccCCceEEeccC
Confidence 4455678999999999999887652 334445444433
No 322
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.62 E-value=0.85 Score=38.34 Aligned_cols=184 Identities=11% Similarity=0.115 Sum_probs=86.8
Q ss_pred EEEEeeCC-----ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCC-----EEEEEeEecCCCceeeee
Q 013578 221 IIASCSEG-----TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTAD-----VKVWEIVYSKDGLVKAVT 290 (440)
Q Consensus 221 ~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~ 290 (440)
+++.|+.+ ..+.+||..+.+-...-..........+..-++++++.|+.++. +.+||+... .+.
T Consensus 64 lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~------~W~ 137 (302)
T 2xn4_A 64 VFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSN------EWF 137 (302)
T ss_dssp EEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTT------EEE
T ss_pred EEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCC------eEe
Confidence 55566543 35888998876533221111111111122236778888876543 555654322 122
Q ss_pred eeeeeeccccceEEEEEcCCCCEEEEEeCC-------CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe
Q 013578 291 SVMQLKGHKSAVTWLCFAPNSEQIITASKD-------GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL 363 (440)
Q Consensus 291 ~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 363 (440)
.+..+.........+.+ ++..++.|+.+ ..+.+||+.+..-... ...+ .....+ +++.
T Consensus 138 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-----~~~p---~~r~~~-----~~~~ 202 (302)
T 2xn4_A 138 HVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI-----AEMS---TRRSGA-----GVGV 202 (302)
T ss_dssp EECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEE-----CCCS---SCCBSC-----EEEE
T ss_pred ecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEEC-----CCCc---cccccc-----cEEE
Confidence 22222211222222222 56666666542 3588888876532211 0011 011111 1221
Q ss_pred CCCCCEEEEec-C-----CEEEEEEcCCccc--hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCC-----eEE
Q 013578 364 SSDGKILAATH-G-----STLQWLSVETGKV--LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDK-----KVK 430 (440)
Q Consensus 364 s~~g~~l~~~~-~-----~~i~i~d~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg-----~i~ 430 (440)
-++++++.|. + ..+.+||..+.+- +..+..... .-..+.+ ++ .+++.||.++ .+.
T Consensus 203 -~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~-~~~~~~~--~~--------~i~v~GG~~~~~~~~~v~ 270 (302)
T 2xn4_A 203 -LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRR-NAGVCAV--NG--------LLYVVGGDDGSCNLASVE 270 (302)
T ss_dssp -ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCB-SCEEEEE--TT--------EEEEECCBCSSSBCCCEE
T ss_pred -ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccc-cCeEEEE--CC--------EEEEECCcCCCcccccEE
Confidence 2566666543 2 4789999887642 222211111 1112222 33 6888888764 478
Q ss_pred EEeCCCC
Q 013578 431 LWLAPSL 437 (440)
Q Consensus 431 vw~~~~~ 437 (440)
+||+.+.
T Consensus 271 ~yd~~~~ 277 (302)
T 2xn4_A 271 YYNPTTD 277 (302)
T ss_dssp EEETTTT
T ss_pred EEcCCCC
Confidence 8887653
No 323
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.56 E-value=0.89 Score=38.17 Aligned_cols=103 Identities=12% Similarity=0.153 Sum_probs=52.1
Q ss_pred EEEEeeCC-----ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecC-----CCEEEEEeEecCCCceeeee
Q 013578 221 IIASCSEG-----TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFT-----ADVKVWEIVYSKDGLVKAVT 290 (440)
Q Consensus 221 ~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~ 290 (440)
+++.|+.+ ..+.+||+.+.+-...-..........+..-++++++.|+.+ ..+.+||+.... +.
T Consensus 162 iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~------W~ 235 (301)
T 2vpj_A 162 IYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDS------WT 235 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE------EE
T ss_pred EEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCc------EE
Confidence 55665543 458899988765432211111111112222367788888764 457888864322 22
Q ss_pred eeeeeeccccceEEEEEcCCCCEEEEEeCC-----CcEEEEecCcc
Q 013578 291 SVMQLKGHKSAVTWLCFAPNSEQIITASKD-----GTLRVWNINVR 331 (440)
Q Consensus 291 ~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d-----g~i~iwd~~~~ 331 (440)
.+..+.........+.+ +++.++.|+.+ ..|.+||+++.
T Consensus 236 ~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 236 TVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp EECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred ECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 22222211112222333 66677777755 35677887643
No 324
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.52 E-value=0.96 Score=38.21 Aligned_cols=184 Identities=8% Similarity=0.060 Sum_probs=87.3
Q ss_pred EEEEeeC----CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec----C-----CCEEEEEeEecCCCcee
Q 013578 221 IIASCSE----GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF----T-----ADVKVWEIVYSKDGLVK 287 (440)
Q Consensus 221 ~l~s~~~----d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----d-----g~i~i~d~~~~~~~~~~ 287 (440)
+++.|+. -..+.+||..+.+-...-..............++.+++.|+. + ..+.+||+....
T Consensus 27 i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~----- 101 (308)
T 1zgk_A 27 IYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ----- 101 (308)
T ss_dssp EEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTE-----
T ss_pred EEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCe-----
Confidence 5565653 235889998876543221111111111122236777777765 2 356777754321
Q ss_pred eeeeeeeeeccccceEEEEEcCCCCEEEEEeCC-----CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEE
Q 013578 288 AVTSVMQLKGHKSAVTWLCFAPNSEQIITASKD-----GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLS 362 (440)
Q Consensus 288 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 362 (440)
+..+..+......-..+.+ ++..++.|+.+ ..+.+||+.+....... .++ .....+. .+.
T Consensus 102 -W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-----~~p---~~r~~~~----~~~ 166 (308)
T 1zgk_A 102 -WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA-----PML---TRRIGVG----VAV 166 (308)
T ss_dssp -EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECC-----CCS---SCCBSCE----EEE
T ss_pred -EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECC-----CCC---ccccceE----EEE
Confidence 2222222211222222333 56667776643 35788888765332110 011 0111111 122
Q ss_pred eCCCCCEEEEec-C-----CEEEEEEcCCccc--hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCC-----CeE
Q 013578 363 LSSDGKILAATH-G-----STLQWLSVETGKV--LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD-----KKV 429 (440)
Q Consensus 363 ~s~~g~~l~~~~-~-----~~i~i~d~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D-----g~i 429 (440)
+ ++++++.|. + ..+.+||..+.+- +..+... ...-..+.+ ++ .+++.||.+ ..+
T Consensus 167 ~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~--~~--------~iyv~GG~~~~~~~~~v 233 (308)
T 1zgk_A 167 L--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTI-RSGAGVCVL--HN--------CIYAAGGYDGQDQLNSV 233 (308)
T ss_dssp E--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEEE--TT--------EEEEECCBCSSSBCCCE
T ss_pred E--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCc-cccceEEEE--CC--------EEEEEeCCCCCCccceE
Confidence 2 566665543 2 5688999877642 2222111 111222223 33 678888765 458
Q ss_pred EEEeCCCC
Q 013578 430 KLWLAPSL 437 (440)
Q Consensus 430 ~vw~~~~~ 437 (440)
.+||+.+.
T Consensus 234 ~~yd~~~~ 241 (308)
T 1zgk_A 234 ERYDVETE 241 (308)
T ss_dssp EEEETTTT
T ss_pred EEEeCCCC
Confidence 88887654
No 325
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.50 E-value=0.95 Score=38.05 Aligned_cols=184 Identities=13% Similarity=0.161 Sum_probs=86.9
Q ss_pred EEEEeeCC----ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCC-----CEEEEEeEecCCCceeeeee
Q 013578 221 IIASCSEG----TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTA-----DVKVWEIVYSKDGLVKAVTS 291 (440)
Q Consensus 221 ~l~s~~~d----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~ 291 (440)
+++.|+.+ ..+..||+.+.+-...-..........+..-++.+++.|+.++ .+.+||..... +..
T Consensus 18 i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~------W~~ 91 (302)
T 2xn4_A 18 MVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQ------WTS 91 (302)
T ss_dssp EEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTE------EEE
T ss_pred EEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCc------eee
Confidence 55555543 3588899887653322111111111112223677888887553 47777754321 222
Q ss_pred eeeeeccccceEEEEEcCCCCEEEEEeCCC-----cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCC
Q 013578 292 VMQLKGHKSAVTWLCFAPNSEQIITASKDG-----TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSD 366 (440)
Q Consensus 292 ~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 366 (440)
+..+......-..+.+ ++..++.|+.++ .+.+||+.+...... ...+ .....+ +++. -+
T Consensus 92 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-----~~~p---~~r~~~-----~~~~-~~ 155 (302)
T 2xn4_A 92 VANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV-----APMN---TRRSSV-----GVGV-VG 155 (302)
T ss_dssp ECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEE-----CCCS---SCCBSC-----EEEE-ET
T ss_pred CCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeec-----CCCC---CcccCc-----eEEE-EC
Confidence 2222221222222223 567777777553 477788775432211 0011 011111 1222 25
Q ss_pred CCEEEEec--------CCEEEEEEcCCccc--hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCC-----eEEE
Q 013578 367 GKILAATH--------GSTLQWLSVETGKV--LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDK-----KVKL 431 (440)
Q Consensus 367 g~~l~~~~--------~~~i~i~d~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg-----~i~v 431 (440)
+++++.|. -..+.+||..+.+- +..+..... ....+.+ ++ .+++.||.++ .+.+
T Consensus 156 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~--~~--------~iyv~GG~~~~~~~~~~~~ 224 (302)
T 2xn4_A 156 GLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRS-GAGVGVL--NN--------LLYAVGGHDGPLVRKSVEV 224 (302)
T ss_dssp TEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCB-SCEEEEE--TT--------EEEEECCBSSSSBCCCEEE
T ss_pred CEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccc-cccEEEE--CC--------EEEEECCCCCCcccceEEE
Confidence 66555542 24588999877642 222211111 1122222 33 6888887653 5778
Q ss_pred EeCCCC
Q 013578 432 WLAPSL 437 (440)
Q Consensus 432 w~~~~~ 437 (440)
||+.+.
T Consensus 225 yd~~~~ 230 (302)
T 2xn4_A 225 YDPTTN 230 (302)
T ss_dssp EETTTT
T ss_pred EeCCCC
Confidence 887654
No 326
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.39 E-value=0.91 Score=38.49 Aligned_cols=94 Identities=10% Similarity=-0.043 Sum_probs=45.2
Q ss_pred EEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecC--------CCEEEEEeEecCCCceeeeeeeeeeeccccce
Q 013578 231 ISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFT--------ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAV 302 (440)
Q Consensus 231 i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v 302 (440)
+..||..+.+-...-..........+..-++++++.|+.+ ..+.+||..... +..+..+......-
T Consensus 69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~------W~~~~~~p~~r~~~ 142 (315)
T 4asc_A 69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFK------WGESDPLPYVVYGH 142 (315)
T ss_dssp EEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTE------EEECCCCSSCCBSC
T ss_pred eEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCc------EeECCCCCCcccce
Confidence 7788988765422211111111111122266777777742 347777764321 22222222111122
Q ss_pred EEEEEcCCCCEEEEEeC-C-----CcEEEEecCccc
Q 013578 303 TWLCFAPNSEQIITASK-D-----GTLRVWNINVRY 332 (440)
Q Consensus 303 ~~~~~~p~~~~l~s~~~-d-----g~i~iwd~~~~~ 332 (440)
..+. -+++.++.|+. + ..+.+||..+..
T Consensus 143 ~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 143 TVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFE 176 (315)
T ss_dssp EEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred eEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence 2222 25667777765 2 368888887653
No 327
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.19 E-value=1.5 Score=38.63 Aligned_cols=266 Identities=11% Similarity=0.151 Sum_probs=141.0
Q ss_pred CCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccccccCCCCCCce
Q 013578 111 ADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGKQQSKLPGPEI 190 (440)
Q Consensus 111 ~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (440)
.+..|.|-|+..+... .+.. -...+.-.+|..+.++.-. +..+.+++.+......... +.....
T Consensus 46 ~~~~vvIiDl~~~~~~----~rrp----i~AdsAIMnP~~~iiALra----g~~lQiFnle~K~klks~~----~~e~Vv 109 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNP----IRRP----ISADSAIMNPASKVIALKA----GKTLQIFNIEMKSKMKAHT----MTDDVT 109 (494)
T ss_dssp TCCEEEEEETTSTTSC----EEEE----CCCSEEEECSSSSCEEEEE----TTEEEEEETTTTEEEEEEE----CSSCCC
T ss_pred CCCeEEEEECCCCCcc----eecc----cccceeeeCCCCcEEEEec----CCeEEEEchHHhhhhccee----cCCCce
Confidence 3447888888876542 2222 1233556778877776664 4577777766543322221 122334
Q ss_pred eecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC-CceeeeeeCC----CCcccEEEecCCCCeEE
Q 013578 191 KWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT-GKLLGNVDTN----QLKNNMAAISPNGRFLA 265 (440)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~----~~~v~~~~~s~~~~~l~ 265 (440)
.|...... .|+..+ +..|+.|++.. ..+.+.+..| ...|.....+++.++++
T Consensus 110 fWkWis~~----------------------~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~ 166 (494)
T 1bpo_A 110 FWKWISLN----------------------TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLL 166 (494)
T ss_dssp EEEEEETT----------------------EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEE
T ss_pred EEEecCCC----------------------eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEE
Confidence 44432211 333333 34599999964 3455555543 33455567788999988
Q ss_pred EEe-------cCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCC---CEEEEEeCC---CcEEEEecCccc
Q 013578 266 AAA-------FTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS---EQIITASKD---GTLRVWNINVRY 332 (440)
Q Consensus 266 ~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~---~~l~s~~~d---g~i~iwd~~~~~ 332 (440)
..+ -.|.+.+|..... ....+.||-+.-..+.+.-+. ..|+.+... +.++|-++....
T Consensus 167 l~GI~~~~~~v~G~mQLYS~er~---------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~ 237 (494)
T 1bpo_A 167 LTGISAQQNRVVGAMQLYSVDRK---------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPP 237 (494)
T ss_dssp EEEEEEETTEEEEEEEEEESTTC---------CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCC
T ss_pred EEeecccCCcccceEEEeecccc---------ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCc
Confidence 654 2467888886433 345567776655554443211 234444332 688888885431
Q ss_pred cccCCCCccccccccccCCCCCeeeeeeEEeCCCCC-EEEEecCCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCC
Q 013578 333 HLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK-ILAATHGSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIP 411 (440)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 411 (440)
.- ..+-..+..............+| ++..|+.-. ..+....|.+++||++++.++..- +-..+.|..-+-+...
T Consensus 238 ~~-~~~f~kk~vdv~fppe~~~DFPv-amqvs~kygviyviTK~G~i~lyDleTgt~i~~n-rIs~~~iF~t~~~~~~-- 312 (494)
T 1bpo_A 238 TG-NQPFPKKAVDVFFPPEAQNDFPV-AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN-RISGETIFVTAPHEAT-- 312 (494)
T ss_dssp TT-CCCCCCEEEECCCCTTSTTCCEE-EEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEEETTT--
T ss_pred cC-CCCccceeeeeeCCcccccCcee-EEEecccCCEEEEEecCceEEEEecccceeeeee-cccCCceEEecccCCC--
Confidence 00 00111111111111112222333 466666544 444567899999999999988765 2344555554444332
Q ss_pred CCCCcceEEEEeeCCCeEEEEeCC
Q 013578 412 MGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 412 ~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
.=++.....|.|.--.++
T Consensus 313 ------~Gi~~Vnr~GqVl~v~v~ 330 (494)
T 1bpo_A 313 ------AGIIGVNRKGQVLSVCVE 330 (494)
T ss_dssp ------TEEEEEETTCEEEEEEEC
T ss_pred ------CcEEEEccCceEEEEEEc
Confidence 224444466666544443
No 328
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.11 E-value=1.6 Score=38.48 Aligned_cols=206 Identities=9% Similarity=0.105 Sum_probs=114.9
Q ss_pred EEEccCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccccccc
Q 013578 97 LCFSSDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAIST 176 (440)
Q Consensus 97 l~~s~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 176 (440)
.-.+|..+.||-=. ..++.|+|+++.... ..... ..+|.-=.|..+ +.|+.++. ..++.|+....
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~kl----ks~~~--~e~VvfWkWis~-~~l~lVT~----taVyHWsi~~~--- 135 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKM----KAHTM--TDDVTFWKWISL-NTVALVTD----NAVYHWSMEGE--- 135 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEE----EEEEC--SSCCCEEEEEET-TEEEEECS----SEEEEEESSSS---
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhh----cceec--CCCceEEEecCC-CeEEEEcC----CeeEEecccCC---
Confidence 34566666666544 678999999876421 11111 246766677654 34555553 37777776431
Q ss_pred ccccccCCCCCCceeeccccc-ccceeEEEeecccccccCCCCCeEEEEee------CCceEEEEeCCCCceeeeeeCCC
Q 013578 177 NEGKQQSKLPGPEIKWEHHKV-HDKRAILTLFGASATYGTADGSTIIASCS------EGTDISIWHGKTGKLLGNVDTNQ 249 (440)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~~------~d~~i~vwd~~~~~~~~~~~~~~ 249 (440)
..+...++.+.. ...+++.... +++.+.++++|- -.|.+.+|..+.+ ..+.+++|.
T Consensus 136 ---------s~P~kvFdR~~~L~~~QIInY~~-------d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGha 198 (494)
T 1bpo_A 136 ---------SQPVKMFDRHSSLAGCQIINYRT-------DAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHA 198 (494)
T ss_dssp ---------CCCEEEEECCGGGTTCEEEEEEE-------CTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSE
T ss_pred ---------CCchhheecchhcccceEEEEEE-------CCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeee
Confidence 122233332221 1222332222 567775665553 3477889988744 445666665
Q ss_pred CcccEEEecCC---CCeEEEEecC---CCEEEEEeEecCCCc-eeeeeeee---eeeccccceEEEEEcCCCCEEEEEeC
Q 013578 250 LKNNMAAISPN---GRFLAAAAFT---ADVKVWEIVYSKDGL-VKAVTSVM---QLKGHKSAVTWLCFAPNSEQIITASK 319 (440)
Q Consensus 250 ~~v~~~~~s~~---~~~l~~~~~d---g~i~i~d~~~~~~~~-~~~~~~~~---~~~~h~~~v~~~~~~p~~~~l~s~~~ 319 (440)
.....+.+.-+ .+.|+.+... ++++|.++.....+. ....+.+. .-..-.+-..++..++.-..++.-+.
T Consensus 199 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK 278 (494)
T 1bpo_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK 278 (494)
T ss_dssp EEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec
Confidence 43333322211 1244444432 789999985431111 11111111 11123455678999998888999999
Q ss_pred CCcEEEEecCccccc
Q 013578 320 DGTLRVWNINVRYHL 334 (440)
Q Consensus 320 dg~i~iwd~~~~~~~ 334 (440)
-|.|.+||++++.++
T Consensus 279 ~G~i~lyDleTgt~i 293 (494)
T 1bpo_A 279 YGYIHLYDLETGTCI 293 (494)
T ss_dssp TSEEEEEETTTCCEE
T ss_pred CceEEEEecccceee
Confidence 999999999988765
No 329
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.73 E-value=1.8 Score=37.04 Aligned_cols=109 Identities=7% Similarity=0.060 Sum_probs=61.0
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCC-CcccEEE---ecCCCCeEEEE-ecCCCEEEEEeEecCCCceeeeeeeeee
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQ-LKNNMAA---ISPNGRFLAAA-AFTADVKVWEIVYSKDGLVKAVTSVMQL 295 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~---~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 295 (440)
+++.++.||.|.-+|..+|+.+-++.... .++.... ...++..++.. +.||.|+.++...+. ..+ ....
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~----~~~--~~~~ 85 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGL----QKL--PLSI 85 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEE----EEE--EEEH
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCc----EEe--eecc
Confidence 78899999999999999999988876541 1211110 00123333343 578999888864332 111 0011
Q ss_pred ec--cccceEE---EEE-c----CCCCEEEEEeCCCcEEEEecCcccccc
Q 013578 296 KG--HKSAVTW---LCF-A----PNSEQIITASKDGTLRVWNINVRYHLD 335 (440)
Q Consensus 296 ~~--h~~~v~~---~~~-~----p~~~~l~s~~~dg~i~iwd~~~~~~~~ 335 (440)
.. ...++.. ... . ..+..+++|+.+|.+.-.|+++++.+.
T Consensus 86 ~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W 135 (339)
T 2be1_A 86 RQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIIS 135 (339)
T ss_dssp HHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEE
T ss_pred ccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEE
Confidence 10 1112221 000 0 034567888888888888887776553
No 330
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.70 E-value=2.2 Score=43.88 Aligned_cols=190 Identities=11% Similarity=0.114 Sum_probs=104.9
Q ss_pred CCCCCeEEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeee
Q 013578 215 TADGSTIIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQ 294 (440)
Q Consensus 215 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 294 (440)
+|... +++.- ...++.++|+++...+......+. |..=.|-. .+.|+..+ +..|+-|++.... . +...
T Consensus 74 nP~~~-iiALr-ag~~lQiFnl~~k~klks~~~~e~-VvfWkWis-~~~l~lVT-~~aVyHW~~~~~s-~------P~k~ 141 (1630)
T 1xi4_A 74 NPASK-VIALK-AGKTLQIFNIEMKSKMKAHTMTDD-VTFWKWIS-LNTVALVT-DNAVYHWSMEGES-Q------PVKM 141 (1630)
T ss_pred CCCcc-eEEEe-cCCeEEEeehHHhhhhcccccCCC-ceEEEecC-CCeeEEEc-CCeEEEeccCCCC-c------cHHH
Confidence 44444 44443 377899999999888877766443 43334432 23444443 5679999985321 1 2222
Q ss_pred eecc----ccceEEEEEcCCCCEEEEEe-------CCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEe
Q 013578 295 LKGH----KSAVTWLCFAPNSEQIITAS-------KDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSL 363 (440)
Q Consensus 295 ~~~h----~~~v~~~~~~p~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 363 (440)
+..| ...|..-..+++.++++..| ..|.+.+|..+.+.... ..||...+..+..
T Consensus 142 fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~---------------iegha~~F~~~~~ 206 (1630)
T 1xi4_A 142 FDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP---------------IEGHAASFAQFKM 206 (1630)
T ss_pred HhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchh---------------hhHhHhhhheecc
Confidence 2222 35688888899999876544 35788899887543211 1122111111111
Q ss_pred C---CCCCEEEEe----cCCEEEEEEcCCc---cchh------hhh--ccccCCeEEEEecCCCCCCCCCcceEEEEeeC
Q 013578 364 S---SDGKILAAT----HGSTLQWLSVETG---KVLD------TAE--KAHEGEITCMAWAPKTIPMGNQQVSVLATSSV 425 (440)
Q Consensus 364 s---~~g~~l~~~----~~~~i~i~d~~~~---~~~~------~~~--~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~ 425 (440)
. +...+++.+ .++.++|.++... .... ... ..-.+-..++..++.. ..+..-+.
T Consensus 207 ~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~--------g~iy~itk 278 (1630)
T 1xi4_A 207 EGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH--------DVVFLITK 278 (1630)
T ss_pred CCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecccc--------CEEEEEec
Confidence 1 111233322 2478888888543 1110 000 0112334455555554 57777788
Q ss_pred CCeEEEEeCCCCCC
Q 013578 426 DKKVKLWLAPSLES 439 (440)
Q Consensus 426 Dg~i~vw~~~~~~~ 439 (440)
-|.|.++|+.++.+
T Consensus 279 ~G~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 279 YGYIHLYDLETGTC 292 (1630)
T ss_pred CceEEEEecccchh
Confidence 99999999998864
No 331
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=94.67 E-value=3.4 Score=40.07 Aligned_cols=186 Identities=10% Similarity=0.095 Sum_probs=93.8
Q ss_pred EEEEeeCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeecccc
Q 013578 221 IIASCSEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS 300 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~ 300 (440)
.|..++.+| +..||..+.+...........|.++.. .+| .|.+++.+ -+..||..... ...... ........
T Consensus 75 ~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~---~~~~~~-~~~~l~~~ 146 (758)
T 3ott_A 75 YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRK---LTSFDT-RRNGLPNN 146 (758)
T ss_dssp EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCC---EEEECH-HHHCCSCS
T ss_pred cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCe---EEEecc-CCCCcCCC
Confidence 455555665 788888765432211111223555543 344 56666665 46677753221 111000 00001134
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEE
Q 013578 301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQW 380 (440)
Q Consensus 301 ~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i 380 (440)
.|.++....++.+.+ ++.+ -+..++..+.... .+..+.. .......|.++....++..|-.|.++.+..
T Consensus 147 ~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~--------~~~~~~~-~~~~~~~i~~i~~d~~~~~lWigt~~Gl~~ 215 (758)
T 3ott_A 147 TIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFE--------GIPLPVH-SSQSNLFVNSLLEDTTRQCVWIGTEGYLFQ 215 (758)
T ss_dssp CEEEEEECTTCCEEE-EETT-EEEEEETTTTEEE--------EECCCCC-TTCSSCCEEEEEEETTTTEEEEEEEEEEEE
T ss_pred eEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceE--------EecCCCc-cccccceeEEEEEECCCCEEEEEECCCCeE
Confidence 688888887777544 4444 4777776543211 0000000 001122366777777765333333457888
Q ss_pred EEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 381 LSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 381 ~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
+|..+++..... ......|.++....++ . |..|+.+ -+.+++..+
T Consensus 216 ~~~~~~~~~~~~-~l~~~~i~~i~~d~~g--------~-lWigT~~-Gl~~~~~~~ 260 (758)
T 3ott_A 216 YFPSTGQIKQTE-AFHNNSIKSLALDGNG--------D-LLAGTDN-GLYVYHNDT 260 (758)
T ss_dssp EETTTTEEEEEE-EEEEEEEEEEEECTTC--------C-EEEEETT-EEEEECCTT
T ss_pred EcCCCCeEEecc-CCCCCeEEEEEEcCCC--------C-EEEEeCC-ceeEEecCC
Confidence 998776542211 1123458888888776 3 4444544 477777654
No 332
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.58 E-value=1.8 Score=36.59 Aligned_cols=92 Identities=10% Similarity=0.055 Sum_probs=43.2
Q ss_pred EEEEeCCCCceeee--eeCCCCcccEEEecCCCCeEEEEecC-------CCEEEEEeEecCCCceeeeeeeeeeeccccc
Q 013578 231 ISIWHGKTGKLLGN--VDTNQLKNNMAAISPNGRFLAAAAFT-------ADVKVWEIVYSKDGLVKAVTSVMQLKGHKSA 301 (440)
Q Consensus 231 i~vwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~ 301 (440)
+..||..+.+-... +.........+. -++++++.|+.+ ..+.+||.... .+..+..+......
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~------~W~~~~~~p~~r~~ 151 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLFGLGE--VDDKIYVVAGKDLQTEASLDSVLCYDPVAA------KWSEVKNLPIKVYG 151 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSCEEEE--ETTEEEEEEEEBTTTCCEEEEEEEEETTTT------EEEEECCCSSCEES
T ss_pred EEEEeCCCCcEEECCCCCccccccceEE--ECCEEEEEcCccCCCCcccceEEEEeCCCC------CEeECCCCCCcccc
Confidence 77888877654322 111111112222 267777777754 13556665322 12222211111111
Q ss_pred eEEEEEcCCCCEEEEEeC------CCcEEEEecCccc
Q 013578 302 VTWLCFAPNSEQIITASK------DGTLRVWNINVRY 332 (440)
Q Consensus 302 v~~~~~~p~~~~l~s~~~------dg~i~iwd~~~~~ 332 (440)
-..+. .++..++.|+. -..+.+||+.+..
T Consensus 152 ~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 152 HNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD 186 (318)
T ss_dssp CEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred cEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence 11222 36666666664 2358889987653
No 333
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.43 E-value=2.2 Score=36.82 Aligned_cols=49 Identities=6% Similarity=-0.109 Sum_probs=25.8
Q ss_pred ceEEEEeCCCCceeeeeeCCCC-cc-cEEEecCCCCeEEEEec------CCCEEEEEe
Q 013578 229 TDISIWHGKTGKLLGNVDTNQL-KN-NMAAISPNGRFLAAAAF------TADVKVWEI 278 (440)
Q Consensus 229 ~~i~vwd~~~~~~~~~~~~~~~-~v-~~~~~s~~~~~l~~~~~------dg~i~i~d~ 278 (440)
..+.+||..+.+-...-..... .. .+++. -++++++.|+. ...+.+||+
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEEC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEe
Confidence 4689999887654322221111 11 22222 35677777764 335666765
No 334
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=94.37 E-value=2.3 Score=36.78 Aligned_cols=64 Identities=13% Similarity=0.054 Sum_probs=36.8
Q ss_pred cccEEEe-------cCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe
Q 013578 251 KNNMAAI-------SPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS 318 (440)
Q Consensus 251 ~v~~~~~-------s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~ 318 (440)
....++| ..+|+++++....+.|...++.... ..... ...+.+....+..+++.|||.++++..
T Consensus 260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g--~~~~~--~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNM--EVRKI--STFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGG--CEEEE--EEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCC--cccce--eeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 4556777 3567666665566677777765321 11111 111222245789999999997666553
No 335
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=94.18 E-value=2.5 Score=36.50 Aligned_cols=64 Identities=11% Similarity=0.035 Sum_probs=35.6
Q ss_pred ccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEe
Q 013578 252 NNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITAS 318 (440)
Q Consensus 252 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~ 318 (440)
...++| .+|+++++....+.|...++....... ... ....+-.....+..+++.|||.++++..
T Consensus 270 p~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~-~~~-~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 270 PGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRW-RVL-RVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp EEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEE-EEE-EEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CcceEE-ECCEEEEEECCCCEEEEEEECCCCcce-eec-chheecccCCCeeEEEECCCCcEEEEEe
Confidence 345666 466666655556677777765443110 000 0111112235789999999998666554
No 336
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=93.90 E-value=5 Score=38.93 Aligned_cols=181 Identities=13% Similarity=0.099 Sum_probs=90.1
Q ss_pred eEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeee-e-eeccccceEEEEE
Q 013578 230 DISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVM-Q-LKGHKSAVTWLCF 307 (440)
Q Consensus 230 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~-~~~h~~~v~~~~~ 307 (440)
-+..+|..+++...........|.++....+|.+.+ |+.+| +.+++..... ........ . ..-....|.++..
T Consensus 212 Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~G-l~~~~~~~~~---~~~~~~~~~~~~~l~~~~i~~i~~ 286 (758)
T 3ott_A 212 YLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDNG-LYVYHNDTTP---LQHIIHDSRNIQSLTNNIIWNIFA 286 (758)
T ss_dssp EEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETTE-EEEECCTTSC---CEEECCCTTCTTSCSCSCEEEEEE
T ss_pred CCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCCc-eeEEecCCCc---EEEEEcCCCCcCcCCcCeEEEEEE
Confidence 377788776543221111233577787777776554 55444 6666643221 11000000 0 0012345888888
Q ss_pred cCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCcc
Q 013578 308 APNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGK 387 (440)
Q Consensus 308 ~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~ 387 (440)
..+|. |..|+..| +.++..... .................|.++.-..+|.+.+++. +.+..++..+++
T Consensus 287 D~~g~-lWiGT~~G-l~~~~~~~~---------~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~-~Gl~~~~~~~~~ 354 (758)
T 3ott_A 287 DQEHN-IWLGTDYG-ISLSRYNSA---------LQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGA-NGLIRFTDPAGE 354 (758)
T ss_dssp CTTCC-EEEEESSS-EEEECCCC----------CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEET-TEEEEESCTTSS
T ss_pred cCCCC-EEEEeCCc-ccccccCCc---------eeEEecccCCCCCCCceEEEEEEcCCCCEEEeeC-Ccceeecccccc
Confidence 87776 44555556 544432211 0111000001111123477888888888777664 457677765532
Q ss_pred c--hhhhh------ccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCC
Q 013578 388 V--LDTAE------KAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSL 437 (440)
Q Consensus 388 ~--~~~~~------~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~ 437 (440)
. ...+. .-....|.++.-..++ . |-.|. ++-+..|+..++
T Consensus 355 ~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g--------~-lWigt-~~GL~~~~~~~~ 402 (758)
T 3ott_A 355 RHDAIWYRMGDKTYPLSHNRIRHIYEDKEQ--------Q-LWIAT-DGSINRYDYATR 402 (758)
T ss_dssp CCCCEEECTTCSSSCCSCSCEEEEEECTTS--------C-EEEEE-TTEEEEEETTTT
T ss_pred cceeEEeccCCcCCCCCCCceEEEEECCCC--------C-EEEEe-CCcHhhcCcCCC
Confidence 1 11110 0112358888887776 3 44444 456888877653
No 337
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=93.83 E-value=2.6 Score=35.44 Aligned_cols=140 Identities=9% Similarity=0.082 Sum_probs=77.6
Q ss_pred cCCCCCeEEEEeeCC-------------ceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEe--cCCCEEEEEe
Q 013578 214 GTADGSTIIASCSEG-------------TDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAA--FTADVKVWEI 278 (440)
Q Consensus 214 ~~~~~~~~l~s~~~d-------------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~i~d~ 278 (440)
+.++|..+.++...+ ..|+..++...+... +... ....+++++++|+-.. .++.-.||.+
T Consensus 60 i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~ 134 (302)
T 3s25_A 60 INADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD----PCIYASLIGNYIYYLHYDTQTATSLYRI 134 (302)
T ss_dssp EEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS----CEEEEEEETTEEEEEEESSSSCEEEEEE
T ss_pred EEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC----CccEEEEeCCEEEEEeecCCCCceEEEE
Confidence 356777555555443 468888877654332 3221 2346788999998876 4666667766
Q ss_pred EecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeC-CCcEEEEecCccccccCCCCccccccccccCCCCCeee
Q 013578 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASK-DGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQ 357 (440)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (440)
..... ....+..+.. .+++|+++.|+-.+. ...|..-++...... . +.. +..
T Consensus 135 ~~dGs-------~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~--------~----l~~--~~~-- 187 (302)
T 3s25_A 135 RIDGE-------EKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA--------L----FYD--CNC-- 187 (302)
T ss_dssp ETTSC-------CCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE--------E----EEC--SCE--
T ss_pred ECCCC-------CeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE--------E----EeC--CCc--
Confidence 54331 1222322322 456778888775554 567777777643211 0 011 111
Q ss_pred eeeEEeCCCCCEEEEec---CCEEEEEEcCCcc
Q 013578 358 YDRLSLSSDGKILAATH---GSTLQWLSVETGK 387 (440)
Q Consensus 358 v~~~~~s~~g~~l~~~~---~~~i~i~d~~~~~ 387 (440)
...+.|++.+|+-.. +..|..-++....
T Consensus 188 --~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 188 --YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp --EEEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred --cceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 123558888887643 2466666665544
No 338
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.27 E-value=3.9 Score=39.16 Aligned_cols=154 Identities=12% Similarity=0.122 Sum_probs=76.9
Q ss_pred CCCeEEEEeeCC----ceEEEEeCCCCceeeee-e-------CCCCcccEEEecCCCCeEEEEecCC------CEEEEEe
Q 013578 217 DGSTIIASCSEG----TDISIWHGKTGKLLGNV-D-------TNQLKNNMAAISPNGRFLAAAAFTA------DVKVWEI 278 (440)
Q Consensus 217 ~~~~~l~s~~~d----~~i~vwd~~~~~~~~~~-~-------~~~~~v~~~~~s~~~~~l~~~~~dg------~i~i~d~ 278 (440)
++. +++.|+.+ ..+.+||..+++-...- . .......++.+..++++++.|+.++ .+.+||.
T Consensus 397 ~~~-iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 397 GND-VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp SSC-EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred CCE-EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 444 66666643 45888998876543322 1 1111122233322778888887543 4667776
Q ss_pred EecCCCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCC--cEEEEecCccccccCCCCccccccccccCCCCCee
Q 013578 279 VYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDG--TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATL 356 (440)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (440)
... .+..+..+......- +++...++..++.|+.++ .+.+||..+.......... ..+ ....++
T Consensus 476 ~t~------~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g--~~p---~~r~~~-- 541 (695)
T 2zwa_A 476 KTR------EWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKD--EFF---QNSLVS-- 541 (695)
T ss_dssp TTT------EEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSS--GGG---GSCCBS--
T ss_pred CCC------cEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCC--CCC---Ccccce--
Confidence 432 122222222111111 223323777888887654 6899998865432111100 011 111111
Q ss_pred eeeeEEeCCC-CCEEEEec---C-----CEEEEEEcCCcc
Q 013578 357 QYDRLSLSSD-GKILAATH---G-----STLQWLSVETGK 387 (440)
Q Consensus 357 ~v~~~~~s~~-g~~l~~~~---~-----~~i~i~d~~~~~ 387 (440)
..+.+..+ +++++.|. + +.+.+||+.+.+
T Consensus 542 --~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 542 --AGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp --CEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred --eEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 23555555 66666543 2 468999988776
No 339
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=92.42 E-value=0.46 Score=43.20 Aligned_cols=79 Identities=16% Similarity=0.165 Sum_probs=51.6
Q ss_pred ccEEEecCCCCeEEEEec-CCCEEEEEeEecCC---Cce-eee-eeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEE
Q 013578 252 NNMAAISPNGRFLAAAAF-TADVKVWEIVYSKD---GLV-KAV-TSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRV 325 (440)
Q Consensus 252 v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~---~~~-~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~i 325 (440)
...+.++|||+++++++. +.++.++|+..-.+ ... ... ....... -.-.....+|.++|.-..|.-.|..|..
T Consensus 325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvk 403 (638)
T 3sbq_A 325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVK 403 (638)
T ss_dssp CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEEE
Confidence 456889999999888764 78899999863210 000 000 0111222 2334678899999965556668999999
Q ss_pred EecCcc
Q 013578 326 WNINVR 331 (440)
Q Consensus 326 wd~~~~ 331 (440)
|++...
T Consensus 404 Wni~~a 409 (638)
T 3sbq_A 404 WNMEEA 409 (638)
T ss_dssp EEHHHH
T ss_pred EeccHH
Confidence 999754
No 340
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=92.29 E-value=5 Score=34.51 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=28.8
Q ss_pred EEEEee-CCceEEEEeCCC--Cce--eeeee-CCCCcccEEEecCCCCeEEEEec-C---------CCEEEEEeE
Q 013578 221 IIASCS-EGTDISIWHGKT--GKL--LGNVD-TNQLKNNMAAISPNGRFLAAAAF-T---------ADVKVWEIV 279 (440)
Q Consensus 221 ~l~s~~-~d~~i~vwd~~~--~~~--~~~~~-~~~~~v~~~~~s~~~~~l~~~~~-d---------g~i~i~d~~ 279 (440)
+++.|+ ....+.+||+.+ .+- +..+. .......++. -++++++.|+. + ..+.+||+.
T Consensus 22 iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~ 94 (357)
T 2uvk_A 22 VYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF--IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPK 94 (357)
T ss_dssp EEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE--ETTEEEEECCEEECTTSCEEECCCEEEEETT
T ss_pred EEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE--ECCEEEEEcCCCCCCCccceeeccEEEEeCC
Confidence 444444 445689999864 322 22222 1111112222 35777777775 2 357777764
No 341
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=91.11 E-value=3 Score=37.53 Aligned_cols=58 Identities=19% Similarity=0.096 Sum_probs=34.0
Q ss_pred cccEEEecCCCC-eEEEEecCCCEEEEEeEecCCCceeeeeeee-ee-e----ccccceEEEEEcCC
Q 013578 251 KNNMAAISPNGR-FLAAAAFTADVKVWEIVYSKDGLVKAVTSVM-QL-K----GHKSAVTWLCFAPN 310 (440)
Q Consensus 251 ~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~-~----~h~~~v~~~~~~p~ 310 (440)
....|+|.|+|. .|+++...|.|++++....... .....+. .+ . ........|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~--~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFK--EPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCS--SCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeee--eeecCCcceeccCccccCCCcceeeEeCCC
Confidence 356889999996 5667778999988863211000 0000110 11 1 12456789999996
No 342
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.82 E-value=6.2 Score=32.71 Aligned_cols=166 Identities=14% Similarity=0.061 Sum_probs=82.9
Q ss_pred CceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEE
Q 013578 228 GTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCF 307 (440)
Q Consensus 228 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 307 (440)
|+.|+.|-....-.+..-......|..++...... ++. . ||.|+.|-..... +... +. .-...|..++.
T Consensus 41 ~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~G--qlg~--P~----~~~~~v~~ia~ 109 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDG--QTTV--PA----EARSGVDAIAA 109 (282)
T ss_dssp TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTS--TTCC--CG----GGSSSEEEEEE
T ss_pred CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCC--CCCC--Cc----ccCCCeEEEEC
Confidence 88999997554322211111123566666554433 333 4 8999888754322 1100 00 01246777776
Q ss_pred cCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCcc
Q 013578 308 APNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGK 387 (440)
Q Consensus 308 ~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~ 387 (440)
..+ +.+.-. ||.|..|-......+.. +.. ....|..++...+..++. . ++.|+.|-....-
T Consensus 110 G~~--hs~al~-~G~v~~wG~n~~gqlg~----------~~~----~~~~i~~i~~G~~~~~~l-~-~G~v~~wG~n~~g 170 (282)
T 3qhy_B 110 GAW--ASYALK-DGKVIAWGDDSDGQTTV----------PAE----AQSGVTALDGGVYTALAV-K-NGGVIAWGDNYFG 170 (282)
T ss_dssp ETT--EEEEEE-TTEEEEEECCTTSTTSC----------CGG----GGSSEEEEEECSSEEEEE-E-TTEEEEEECCTTS
T ss_pred cCC--EEEEEe-CCeEEEecCCCCCcCCC----------Ccc----CCCCeEEEEcccCEEEEE-E-CCEEEEecCCCCC
Confidence 543 333444 89999998764333210 000 011244454443333332 3 6777777654422
Q ss_pred chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 388 VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 388 ~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
.+..- ..-...|..|+.... ..++. .||.|..|-..
T Consensus 171 qlg~p-~~~~~~v~~i~~G~~---------hs~al--~~G~v~~wG~n 206 (282)
T 3qhy_B 171 QTTVP-AEAQSGVDDVAGGIF---------HSLAL--KDGKVIAWGDN 206 (282)
T ss_dssp TTSCC-GGGGSSEEEEEECSS---------EEEEE--ETTEEEEEECC
T ss_pred CCCCc-eecCCCeEEEEecCC---------EEEEE--ECCeEEEEECC
Confidence 22111 112345777776655 34444 48888888644
No 343
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=90.76 E-value=6.7 Score=32.99 Aligned_cols=182 Identities=7% Similarity=0.050 Sum_probs=86.7
Q ss_pred EEEEeeCCceEEEEeCCCCceee-eeeCCCCcccEEEecCCCCeEEEEec----CC-------CEEEEEeEecCCCceee
Q 013578 221 IIASCSEGTDISIWHGKTGKLLG-NVDTNQLKNNMAAISPNGRFLAAAAF----TA-------DVKVWEIVYSKDGLVKA 288 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~----dg-------~i~i~d~~~~~~~~~~~ 288 (440)
+++.|+ ..+..||..+++-.. .+..........+...++++++.|+. ++ .+.+||.... .
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~------~ 78 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS------E 78 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTT------E
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCC------e
Confidence 455555 469999998876432 11111122333344457788888874 11 1555554322 1
Q ss_pred eeeeeeeeccccceEEEEEcCCCCEEEEEeCC--------CcEEEEecCccccccCCCCccccccccccCCCCCeeeeee
Q 013578 289 VTSVMQLKGHKSAVTWLCFAPNSEQIITASKD--------GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDR 360 (440)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 360 (440)
+..+..+......-..+.+ ++..++.|+.+ ..+.+||..+..-... ..++. ...++ +
T Consensus 79 W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~-----~~~p~---~r~~~-----~ 143 (315)
T 4asc_A 79 WLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGES-----DPLPY---VVYGH-----T 143 (315)
T ss_dssp EEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEEC-----CCCSS---CCBSC-----E
T ss_pred EEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeEC-----CCCCC---cccce-----e
Confidence 2222222111111122222 56666666632 3588888876532211 00110 11111 1
Q ss_pred EEeCCCCCEEEEec--C-----CEEEEEEcCCcc--chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCC----
Q 013578 361 LSLSSDGKILAATH--G-----STLQWLSVETGK--VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDK---- 427 (440)
Q Consensus 361 ~~~s~~g~~l~~~~--~-----~~i~i~d~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg---- 427 (440)
++. .++++++.|. + ..+.+||..+.+ .+..+..+ ...-.++.+ ++ .+++.||.++
T Consensus 144 ~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~--~~--------~iyv~GG~~~~~~~ 211 (315)
T 4asc_A 144 VLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTA-RSLFGATVH--DG--------RIIVAAGVTDTGLT 211 (315)
T ss_dssp EEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEEE--TT--------EEEEEEEECSSSEE
T ss_pred EEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCc-hhceEEEEE--CC--------EEEEEeccCCCCcc
Confidence 222 4556555543 1 478999988764 22222111 111122222 33 6788887654
Q ss_pred -eEEEEeCCCC
Q 013578 428 -KVKLWLAPSL 437 (440)
Q Consensus 428 -~i~vw~~~~~ 437 (440)
.+.+||+.+.
T Consensus 212 ~~~~~yd~~~~ 222 (315)
T 4asc_A 212 SSAEVYSITDN 222 (315)
T ss_dssp EEEEEEETTTT
T ss_pred ceEEEEECCCC
Confidence 4777887654
No 344
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=90.07 E-value=8.4 Score=33.03 Aligned_cols=110 Identities=16% Similarity=0.134 Sum_probs=57.7
Q ss_pred cccccccCCCCCeEEEEeeCCceEEEEeCCCCcee--eee----eCCCCcccEEEecCC---CCeEEEE-e--cCCCEEE
Q 013578 208 GASATYGTADGSTIIASCSEGTDISIWHGKTGKLL--GNV----DTNQLKNNMAAISPN---GRFLAAA-A--FTADVKV 275 (440)
Q Consensus 208 ~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~--~~~----~~~~~~v~~~~~s~~---~~~l~~~-~--~dg~i~i 275 (440)
.+..+.+.|+|+ ++++-...|.|++++...++.. ..+ .........++++|+ +..|++. + .++.|.-
T Consensus 33 ~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 33 SPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 344566688887 6666555889999987655432 211 122445678999995 3444443 2 2333443
Q ss_pred EEeEecCC--Cceeeeeee-eeee-ccccceEEEEEcCCCCEEEEEe
Q 013578 276 WEIVYSKD--GLVKAVTSV-MQLK-GHKSAVTWLCFAPNSEQIITAS 318 (440)
Q Consensus 276 ~d~~~~~~--~~~~~~~~~-~~~~-~h~~~v~~~~~~p~~~~l~s~~ 318 (440)
|.+..... ......+.+ ..+. +....-..|.|.|||.++++.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 43322110 011111111 1121 1112345799999998777654
No 345
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=89.40 E-value=15 Score=35.09 Aligned_cols=115 Identities=7% Similarity=0.006 Sum_probs=58.6
Q ss_pred CCCeEEEEeeCCc--eEEEEeCCCCceeeee-----eCCCCcccEEEecCC-CCeEEEEec--C-----CCEEEEEeEec
Q 013578 217 DGSTIIASCSEGT--DISIWHGKTGKLLGNV-----DTNQLKNNMAAISPN-GRFLAAAAF--T-----ADVKVWEIVYS 281 (440)
Q Consensus 217 ~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~-----~~~~~~v~~~~~s~~-~~~l~~~~~--d-----g~i~i~d~~~~ 281 (440)
++. +++.|+.++ .+.+||..+.+-...- ........++.+..+ +++++.|+. + ..+.+||+...
T Consensus 500 ~~~-iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 500 DGN-VLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp TSC-EEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred CCE-EEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 555 666666543 6899999876543221 112222333555655 677788875 2 34778887554
Q ss_pred CCCceeeeeeeeeee-ccccceEEEEEcCCCCEEEEEeCC--------CcEEEEecCcccc
Q 013578 282 KDGLVKAVTSVMQLK-GHKSAVTWLCFAPNSEQIITASKD--------GTLRVWNINVRYH 333 (440)
Q Consensus 282 ~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~~~d--------g~i~iwd~~~~~~ 333 (440)
.-.....+..+.... ........+ ...++..++.|+.+ ..|.+||+.+...
T Consensus 579 ~w~~~~~W~~~~~~p~~~R~~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W 638 (695)
T 2zwa_A 579 NATEPITVIKKLQHPLFQRYGSQIK-YITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETL 638 (695)
T ss_dssp CSSCCEEEEEEEECGGGCCBSCEEE-EEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred ccccceEEEEcCCCCCCCcccceEE-EeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence 310001122222211 111111222 33336777777742 4588999886543
No 346
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=88.99 E-value=11 Score=32.79 Aligned_cols=175 Identities=11% Similarity=0.054 Sum_probs=90.1
Q ss_pred eEEEEeCCCC--ceeeeeeCC------CCcccEEEec---CC----CCeEEEEe-cCCCEEEEEeEecCCCceee----e
Q 013578 230 DISIWHGKTG--KLLGNVDTN------QLKNNMAAIS---PN----GRFLAAAA-FTADVKVWEIVYSKDGLVKA----V 289 (440)
Q Consensus 230 ~i~vwd~~~~--~~~~~~~~~------~~~v~~~~~s---~~----~~~l~~~~-~dg~i~i~d~~~~~~~~~~~----~ 289 (440)
.|.+||+.++ +.++.+... ......+++. ++ +.+++.+. ..+-|.+||+..++...+.. .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4778999998 888777543 2335567776 22 34555554 35668899986554221110 0
Q ss_pred --eeeeeeecc----ccceEEEEEcCC----CCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeee
Q 013578 290 --TSVMQLKGH----KSAVTWLCFAPN----SEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYD 359 (440)
Q Consensus 290 --~~~~~~~~h----~~~v~~~~~~p~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 359 (440)
.......|. ...|..|+++|+ ++.|+-....+ -++|.+.+........ ...+ ......+....-.
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~--~~~v--~~~G~kg~~s~~~ 278 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGG--KLNP--ELLGNRGKYNDAI 278 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTC--CCCC--EEEEECCTTCCEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcch--hhce--EEeeecCCCCCcc
Confidence 001111121 247899999998 77777666543 3566665443322111 1101 1111111111223
Q ss_pred eEEeC-CCCCEEEEe-cCCEEEEEEcCC-c---cchhhhhc-cccCCeEEEEecCCC
Q 013578 360 RLSLS-SDGKILAAT-HGSTLQWLSVET-G---KVLDTAEK-AHEGEITCMAWAPKT 409 (440)
Q Consensus 360 ~~~~s-~~g~~l~~~-~~~~i~i~d~~~-~---~~~~~~~~-~h~~~v~~v~~~~~~ 409 (440)
.+++. .+|.++.+- ..+.|..|+..+ . +....+.. ..-.-+..+.+.+++
T Consensus 279 ~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g 335 (381)
T 3q6k_A 279 ALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKG 335 (381)
T ss_dssp EEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTS
T ss_pred eEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCC
Confidence 45665 567655553 478999999876 1 11222211 111236677777665
No 347
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=86.84 E-value=15 Score=31.88 Aligned_cols=264 Identities=11% Similarity=0.040 Sum_probs=126.5
Q ss_pred EccCCCEEEEeeCCCcEEEEecCCCC-----CcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccc
Q 013578 99 FSSDGKCLATACADGVIRVHKLDDAS-----SKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKA 173 (440)
Q Consensus 99 ~s~dg~~l~t~s~dg~v~vW~~~~~~-----~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (440)
+-|+..++++.+.+|.|+--.+.... ... ........+..+..+........++..+..+....+..++....
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g--~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~ 80 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRG--RSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEA 80 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCC--SEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCC--ceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCC
Confidence 45778899999999999876543210 000 11222233455666666666677777777765555555554333
Q ss_pred cccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC-------ceeeeee
Q 013578 174 ISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG-------KLLGNVD 246 (440)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-------~~~~~~~ 246 (440)
.....+.....+ ........+....... ...++. +++..+..|.++...+... .....+.
T Consensus 81 ~r~a~G~~i~~l---------l~L~~~e~Iv~~~~~~---~~~~~~-~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~ 147 (370)
T 3l6v_A 81 GSNARGRPIINW---------IPLESGERVQAVLPVR---EYADNR-YVFMATRNGTVKKTPLSEFAFRLARGKIAINLD 147 (370)
T ss_dssp CTTSCCEEGGGS---------CCCCTTCCEEEEEEES---CCCTTC-EEEEEETTSEEEEEEGGGGCSCCTTCEESSCCC
T ss_pred CcccCCcCHhhc---------cCCCCCCEEEEEEEec---cCCCCc-EEEEEeCCCeEEEeEHHHhhcccCCceEEEEeC
Confidence 222111111100 0000111111111100 011233 7888899999998775432 1222232
Q ss_pred CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCC-CceeeeeeeeeeeccccceEEEEEcC----------------
Q 013578 247 TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKD-GLVKAVTSVMQLKGHKSAVTWLCFAP---------------- 309 (440)
Q Consensus 247 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~h~~~v~~~~~~p---------------- 309 (440)
. ...+..+........++..+.+|.+..++...-.. +..........+. ....|.++...+
T Consensus 148 ~-~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~ 225 (370)
T 3l6v_A 148 E-GDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEE 225 (370)
T ss_dssp T-TCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC--------------
T ss_pred C-CCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEeccccccccccccccccc
Confidence 2 23344444444556788888899888777532110 0000001112222 224455544433
Q ss_pred -------------------CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEE
Q 013578 310 -------------------NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKIL 370 (440)
Q Consensus 310 -------------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 370 (440)
++..+++.+..|..+...+...............+. .....+. -+.......+..++
T Consensus 226 ~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k--~~~~~g~--lv~~~~v~~~d~i~ 301 (370)
T 3l6v_A 226 VVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQ--TTERNGK--LVRAVLLGSTDEVM 301 (370)
T ss_dssp ---------------------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSC--CCTTTCS--EEEEEEECTTCEEE
T ss_pred cccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEE--ecCCCCc--EEEEEEeCCCceEE
Confidence 345788999999999888764433221111122111 1111111 12223344555666
Q ss_pred EEecCCEEEEEEc
Q 013578 371 AATHGSTLQWLSV 383 (440)
Q Consensus 371 ~~~~~~~i~i~d~ 383 (440)
+....|.+.-..+
T Consensus 302 liT~~G~~iR~~v 314 (370)
T 3l6v_A 302 LISDGGTLVRTRG 314 (370)
T ss_dssp EEETTCCEEEEEG
T ss_pred EEcCCCeEEEeeH
Confidence 6666665555544
No 348
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=86.64 E-value=15 Score=31.67 Aligned_cols=167 Identities=10% Similarity=0.023 Sum_probs=89.1
Q ss_pred CcceeEEEEcc--CCC-EEEEe-eC--CCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcce
Q 013578 91 GDSVTGLCFSS--DGK-CLATA-CA--DGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCS 164 (440)
Q Consensus 91 ~~~V~~l~~s~--dg~-~l~t~-s~--dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~ 164 (440)
.-....+.+.+ +|. +|+.+ .. +.+|.+|+++................-.....+.+.++|...++...-.....
T Consensus 111 ~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~ 190 (355)
T 3sre_A 111 SFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPY 190 (355)
T ss_dssp GCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHH
T ss_pred ceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcc
Confidence 34566777765 453 34444 22 57889998876543322222222222345678999999876665432110000
Q ss_pred EEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC-Cce--
Q 013578 165 LYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT-GKL-- 241 (440)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~-- 241 (440)
...++. ......+....++. ............+..+.++||++.+.++-+..+.|..|++.. ++.
T Consensus 191 ~~~~e~----------~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~ 258 (355)
T 3sre_A 191 LKSWEM----------HLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTP 258 (355)
T ss_dssp HHHHHH----------HTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred cccchh----------hccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEec
Confidence 000000 00000011112221 222334455566788889999997777777888999999863 332
Q ss_pred eeeeeCCCCcccEEEecC-CCCeEEEEecC
Q 013578 242 LGNVDTNQLKNNMAAISP-NGRFLAAAAFT 270 (440)
Q Consensus 242 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d 270 (440)
.+.+.. ......+++.+ +|++.+++..+
T Consensus 259 ~~~~~~-~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 259 LRVLSF-DTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEEEEC-SSEEEEEEECTTTCCEEEEEESC
T ss_pred CEEEeC-CCCCceEEEeCCCCcEEEEecCC
Confidence 123322 34556788998 58877766533
No 349
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=86.47 E-value=14 Score=31.12 Aligned_cols=215 Identities=10% Similarity=0.054 Sum_probs=104.3
Q ss_pred cCCCEEEEeeCCCcEEEEecCCCCCcce---eeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccc
Q 013578 101 SDGKCLATACADGVIRVHKLDDASSKSF---KFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTN 177 (440)
Q Consensus 101 ~dg~~l~t~s~dg~v~vW~~~~~~~~~~---~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 177 (440)
|+..++++.+.+|.|+--.+..-..... -........+..+..+........++..+..+....+..++........
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 4567888999999998766543211000 0000111223444455555566677777777555555555543332211
Q ss_pred cccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC-------ceeeeeeCCCC
Q 013578 178 EGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG-------KLLGNVDTNQL 250 (440)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-------~~~~~~~~~~~ 250 (440)
.+.....+ ........+....... ...++. +++..+..|.++...+... .....+..+ .
T Consensus 81 ~G~~i~~~---------l~l~~~e~i~~~~~~~---~~~~~~-~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d 146 (307)
T 1zi0_A 81 RGRPIVNL---------LPLEQDERITAILPVT---EFEEGV-KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-D 146 (307)
T ss_dssp CCEEGGGT---------SCCCTTCCEEEEEEES---CCCTTC-EEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-C
T ss_pred CCeEhhhc---------cCCCCCCEEEEEEEec---cCCCCc-EEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-C
Confidence 11110000 0000111111111100 012333 6788899999998866421 111223333 3
Q ss_pred cccEEEecCCCCeEEEEecCCCEEEEEeEecCC-CceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 013578 251 KNNMAAISPNGRFLAAAAFTADVKVWEIVYSKD-GLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNIN 329 (440)
Q Consensus 251 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~ 329 (440)
.+..+........++..+.+|.+..++...-.. +..........+. ....|.++...+++..|++.+..|.++-.++.
T Consensus 147 ~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 147 ELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp CEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred EEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 444444444556788888899888877532110 0000011122333 23557777655556678888999999988875
Q ss_pred c
Q 013578 330 V 330 (440)
Q Consensus 330 ~ 330 (440)
.
T Consensus 226 e 226 (307)
T 1zi0_A 226 E 226 (307)
T ss_dssp G
T ss_pred H
Confidence 3
No 350
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=86.31 E-value=14 Score=31.13 Aligned_cols=217 Identities=10% Similarity=0.089 Sum_probs=108.9
Q ss_pred ccCCCEEEEeeCCCcEEEEecCCCCCcc---eeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccccccc
Q 013578 100 SSDGKCLATACADGVIRVHKLDDASSKS---FKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAIST 176 (440)
Q Consensus 100 s~dg~~l~t~s~dg~v~vW~~~~~~~~~---~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 176 (440)
-++..++++.+.+|.|+--.+..-.... .-........+..+..+........++..+..+....+..++.......
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 3567789999999999987765432110 0011112233345556666666677777777755555555443322111
Q ss_pred ccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC-------CceeeeeeCCC
Q 013578 177 NEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT-------GKLLGNVDTNQ 249 (440)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~-------~~~~~~~~~~~ 249 (440)
..+..... .........+....... ...++. .++..+..|.++...+.. |.....+.. .
T Consensus 85 ~~G~~i~~---------~l~l~~~e~i~~~~~~~---~~~~~~-~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~ 150 (312)
T 1suu_A 85 SKGQNISE---------LINLGDQEEILTIKNSK---DLTDDA-YLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-K 150 (312)
T ss_dssp ---CBGGG---------TSCCCTTCCEEEEEEES---CCCTTC-EEEEEETTSEEEEEEGGGGCC----CEECBCCCT-T
T ss_pred CCCcChhh---------ccCCCCCCEEEEEEEec---cCCCCC-EEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-C
Confidence 11110000 00000111111111100 011233 677778899888877642 222223333 3
Q ss_pred CcccEEEecCCCCeEEEEecCCCEEEEEeEecC-CCceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEec
Q 013578 250 LKNNMAAISPNGRFLAAAAFTADVKVWEIVYSK-DGLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNI 328 (440)
Q Consensus 250 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~ 328 (440)
..+..+.....+..++..+.+|.+..+....-. .+..........+.. ...|.++..-.++..|++.+..|..+..++
T Consensus 151 d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~ 229 (312)
T 1suu_A 151 DFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNM 229 (312)
T ss_dssp CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEG
T ss_pred CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEH
Confidence 344444444455678888999998888864311 111011112233332 355666665555667888899999999988
Q ss_pred Ccc
Q 013578 329 NVR 331 (440)
Q Consensus 329 ~~~ 331 (440)
...
T Consensus 230 ~e~ 232 (312)
T 1suu_A 230 SKI 232 (312)
T ss_dssp GGS
T ss_pred HHh
Confidence 743
No 351
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=85.70 E-value=20 Score=32.27 Aligned_cols=57 Identities=19% Similarity=0.225 Sum_probs=34.8
Q ss_pred cceeEEEEccCCC-EEEEeeCCCcEEEEecCCCCCcceeeEEec--C------CCCCCCceEEEccC
Q 013578 92 DSVTGLCFSSDGK-CLATACADGVIRVHKLDDASSKSFKFLRIN--L------PPGGPPTAVAFADN 149 (440)
Q Consensus 92 ~~V~~l~~s~dg~-~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~--~------~~~~~v~~v~~~~~ 149 (440)
..-+.|+|.|||. .|+.+...|.|++++.+.... ...+.... . ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~-~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIF-KEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBC-SSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCee-eeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 4568999999996 555567889999997543211 11111111 1 11356778999986
No 352
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=85.10 E-value=15 Score=30.38 Aligned_cols=28 Identities=14% Similarity=-0.073 Sum_probs=16.4
Q ss_pred ceeEEEEccCCCEEEEeeCCCcEEEEecCCC
Q 013578 93 SVTGLCFSSDGKCLATACADGVIRVHKLDDA 123 (440)
Q Consensus 93 ~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~ 123 (440)
.|..++.-.... ++. . ||.|..|-....
T Consensus 25 ~i~~ia~G~~h~-~~l-~-~G~v~~wG~n~~ 52 (282)
T 3qhy_B 25 GVDAIAGGYFHG-LAL-K-GGKVLGWGANLN 52 (282)
T ss_dssp SCCEEEECSSEE-EEE-E-TTEEEEEECCSS
T ss_pred CCcEEEeCCCeE-EEE-E-CCEEEEEeCCCC
Confidence 466666643322 222 4 888888876543
No 353
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=84.00 E-value=1.9 Score=36.88 Aligned_cols=108 Identities=11% Similarity=0.034 Sum_probs=57.0
Q ss_pred CEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEE--ecCCEEEEEEcCCccch
Q 013578 312 EQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAA--THGSTLQWLSVETGKVL 389 (440)
Q Consensus 312 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--~~~~~i~i~d~~~~~~~ 389 (440)
..++.++.||.|.-.|.++++........ ... +....... +...++..++. ..||.|+.++..+|...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~--~~~-p~~~~~~~-------~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~ 80 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE--NFQ-PLIEIQEP-------SRLETYETLIIEPFGDGNIYYFNAHQGLQK 80 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG--GSC-CSEECCCS-------CTTTSSEEEEECCSTTTEEEEEETTTEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC--ccC-CcEEecCC-------ccccCCcEEEEEECCCCEEEEEECCCCcEE
Confidence 36778888888888888877654332211 000 00000000 00123344444 35888888888887543
Q ss_pred hhhhcc---ccCCeEE---EEe------cCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCC
Q 013578 390 DTAEKA---HEGEITC---MAW------APKTIPMGNQQVSVLATSSVDKKVKLWLAPSLE 438 (440)
Q Consensus 390 ~~~~~~---h~~~v~~---v~~------~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~ 438 (440)
..+... ...++.. ... +.+ ..+++|+.+|++...|+.+|+
T Consensus 81 ~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~---------g~Vy~Gs~~g~l~ald~~tG~ 132 (339)
T 2be1_A 81 LPLSIRQLVSTSPLHLKTNIVVNDSGKIVED---------EKVYTGSMRTIMYTINMLNGE 132 (339)
T ss_dssp EEEEHHHHHTTCSEEEECC----------CC---------EEEEECEEEEEEEEEETTTCC
T ss_pred eeeccccceeccccccCCCceeecccccccC---------CEEEEEecCCEEEEEECCCCc
Confidence 322111 1112221 000 122 578899999999988888775
No 354
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=83.98 E-value=19 Score=30.59 Aligned_cols=198 Identities=5% Similarity=-0.035 Sum_probs=104.1
Q ss_pred EEEEeeCCceEEEEeCCCCc-------eeeeeeC-CCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCC----ceee
Q 013578 221 IIASCSEGTDISIWHGKTGK-------LLGNVDT-NQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDG----LVKA 288 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~-------~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~ 288 (440)
.+++.+.+|.|+--.+.+.+ -+..+.. ....+..+........|+.-+..|+++-.....-... .-..
T Consensus 5 v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~ 84 (327)
T 3uc1_A 5 VVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQH 84 (327)
T ss_dssp EEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEE
T ss_pred EEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEE
Confidence 67888899999876543211 1111111 1233444444556667777778887765543211110 0000
Q ss_pred eeeeeeeeccccceEEEEEcC---CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCC
Q 013578 289 VTSVMQLKGHKSAVTWLCFAP---NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSS 365 (440)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~~p---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 365 (440)
......+.. ...|.++..-+ +..+++..+.+|.|+.-.+........ .....+ .......-+.....+.
T Consensus 85 i~~~l~l~~-~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r--~G~~~i-----~lke~D~lv~~~~~~~ 156 (327)
T 3uc1_A 85 VANLLAFQP-EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRS--GGIVAV-----NLRDNDELVGAVLCSA 156 (327)
T ss_dssp HHHHTTCCT-TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCS--SCEESC-----BCCTTCCEEEEEEECT
T ss_pred HHHccCCCC-CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcccc--CceEEE-----EECCCCEEEEEEEecC
Confidence 001122222 34455543333 577899999999999988765332111 011111 1111222233344455
Q ss_pred CCCEEEEecCCEEEEEEcC--Cccc---------hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578 366 DGKILAATHGSTLQWLSVE--TGKV---------LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA 434 (440)
Q Consensus 366 ~g~~l~~~~~~~i~i~d~~--~~~~---------~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~ 434 (440)
+..+++.++.|.+..+... .-.. .-.+ .....|.++...+++ ..|+..+..|.++.-.+
T Consensus 157 ~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L--~~~d~Vv~~~~~~~~--------~~ll~~T~~G~~Krt~l 226 (327)
T 3uc1_A 157 GDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRF--NIDDRLLSLNVVREG--------TYLLVATSGGYAKRTAI 226 (327)
T ss_dssp TCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCC--CTTCCEEEEEECCTT--------CEEEEEETTSEEEEEEG
T ss_pred CCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecC--CCCCEEEEEEEECCC--------CEEEEEeCCCcEEEEEH
Confidence 5566777788888888776 2211 1112 134557776665544 58888899999988765
Q ss_pred CC
Q 013578 435 PS 436 (440)
Q Consensus 435 ~~ 436 (440)
..
T Consensus 227 ~e 228 (327)
T 3uc1_A 227 EE 228 (327)
T ss_dssp GG
T ss_pred HH
Confidence 43
No 355
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=83.91 E-value=19 Score=30.57 Aligned_cols=299 Identities=11% Similarity=0.042 Sum_probs=134.7
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCcc---eeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeeccccccccccc
Q 013578 103 GKCLATACADGVIRVHKLDDASSKS---FKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEG 179 (440)
Q Consensus 103 g~~l~t~s~dg~v~vW~~~~~~~~~---~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (440)
...+++.+.+|.|+--.+.+-.... .-........+..+..+........++..+..+....+..++.........+
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 3467788888888765432110000 0000111122234555555556666776766655555555554433211111
Q ss_pred cccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCCc-------eeeeeeCCCCcc
Q 013578 180 KQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK-------LLGNVDTNQLKN 252 (440)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-------~~~~~~~~~~~v 252 (440)
..... .........+....... ..++.. +++..+.+|.++...+.... ....+.. ...+
T Consensus 83 ~~i~~---------~l~l~~~e~i~~~~~~~---~~~~e~-~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~l 148 (327)
T 3uc1_A 83 QHVAN---------LLAFQPEERIAQVIQIR---GYTDAP-YLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDEL 148 (327)
T ss_dssp EEHHH---------HTTCCTTCCEEEEEEES---STTSSS-EEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCE
T ss_pred EEHHH---------ccCCCCCCEEEEEEEec---cCCCCC-EEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEE
Confidence 11000 00000111111111100 012334 88899999999988765422 1122333 3334
Q ss_pred cEEEecCCCCeEEEEecCCCEEEEEeE--ecCC-CceeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 013578 253 NMAAISPNGRFLAAAAFTADVKVWEIV--YSKD-GLVKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNIN 329 (440)
Q Consensus 253 ~~~~~s~~~~~l~~~~~dg~i~i~d~~--~~~~-~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~ 329 (440)
..+........|+..+..|.+..+... .-.. +..........+. ....|.++...+++.+|+..+..|.++.-.+.
T Consensus 149 v~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~ 227 (327)
T 3uc1_A 149 VGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIE 227 (327)
T ss_dssp EEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred EEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHH
Confidence 444444556678888899998888765 2110 1100111122333 24567777666667789999999999988876
Q ss_pred ccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccchhh-------hhccccCCeEE
Q 013578 330 VRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKVLDT-------AEKAHEGEITC 402 (440)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~~~~-------~~~~h~~~v~~ 402 (440)
..............+ ......++ -+.......+..+++.+.+|.+..++...-..... +.-...+.|.+
T Consensus 228 e~~~~~R~~~G~~~~--~l~~~~d~--lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~ 303 (327)
T 3uc1_A 228 EYPVQGRGGKGVLTV--MYDRRRGR--LVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLA 303 (327)
T ss_dssp GSCBCCTTSCCEESS--CCCTTTCS--EEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEE
T ss_pred HccccCcCCCcEEEE--EecCCCCe--EEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEE
Confidence 433221111111111 11111122 22223334555566667777666666543222211 11113456777
Q ss_pred EEecCCCCCCCCCcceEEEEeeCCC
Q 013578 403 MAWAPKTIPMGNQQVSVLATSSVDK 427 (440)
Q Consensus 403 v~~~~~~~~~~~~~~~~l~t~~~Dg 427 (440)
+...+.. . ..+.+.+.+|
T Consensus 304 ~~~~~~~-----~--~~~~~~~~~g 321 (327)
T 3uc1_A 304 IARNAEE-----S--GDDNAVDANG 321 (327)
T ss_dssp EEECC--------------------
T ss_pred EEEcCCC-----c--ceEEEEecCC
Confidence 6665442 1 3455555554
No 356
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=83.90 E-value=18 Score=36.09 Aligned_cols=33 Identities=24% Similarity=0.254 Sum_probs=27.4
Q ss_pred CeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCCCCC
Q 013578 399 EITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 399 ~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
.+.+++..++. .+++|-+.|+++|+|++.++++
T Consensus 237 ~~~~~~~~~~~--------~~lftl~~D~~LRiWsl~t~~~ 269 (950)
T 4gq2_M 237 TIISMIFLSTY--------NVLVMLSLDYKLKVLDLSTNQC 269 (950)
T ss_dssp CEEEEEEETTT--------TEEEEEETTCEEEEEETTTTEE
T ss_pred eEEEEeecCCC--------cEEEEEECCCEEEEEECCCCCe
Confidence 46677777766 7999999999999999998754
No 357
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=83.88 E-value=19 Score=30.52 Aligned_cols=265 Identities=10% Similarity=0.022 Sum_probs=127.5
Q ss_pred cCCCEEEEeeCCCcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEeecCCcceEEeecccccccccccc
Q 013578 101 SDGKCLATACADGVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGK 180 (440)
Q Consensus 101 ~dg~~l~t~s~dg~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (440)
|+..++++.+.+|.|+--.+..-.... ........+..+..+........++..+..+....+..++.........+.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~--~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASN--GQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTT--TCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcC--ccccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 567788999999999876554211000 001112233455556666667777777777655555555543332221111
Q ss_pred ccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeCCceEEEEeCCC--------CceeeeeeCCCCcc
Q 013578 181 QQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKT--------GKLLGNVDTNQLKN 252 (440)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~--------~~~~~~~~~~~~~v 252 (440)
..... ........+....... ...++. +++..+..|.++...+.. +.....+... ..+
T Consensus 81 ~i~~~---------i~L~~~e~Iv~~~~~~---~~~~~~-~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~l 146 (323)
T 1wp5_A 81 HIANI---------IPIDRDEEIIKAIPIN---DFELNG-YFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQV 146 (323)
T ss_dssp EGGGT---------SCCCTTCCEEEEEEES---CTTSSC-EEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCE
T ss_pred Chhhc---------cCCCCCCEEEEEEEec---ccCCCc-eEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEE
Confidence 10000 0000111111111100 011233 678889999999887642 1111223322 344
Q ss_pred cEEEecCCCCeEEEEecCCCEEEEEeEecC-CCceeeeeeeeeeeccccceEEEEEcCCCC-EEEEEeCCCcEEEEecCc
Q 013578 253 NMAAISPNGRFLAAAAFTADVKVWEIVYSK-DGLVKAVTSVMQLKGHKSAVTWLCFAPNSE-QIITASKDGTLRVWNINV 330 (440)
Q Consensus 253 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~~~dg~i~iwd~~~ 330 (440)
..+........++..+.+|.+..+....-. .+..........+. ....|.++..-+++. .|++.+..|..+..++..
T Consensus 147 v~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 147 VDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 444444456678888899998888763211 01101111222333 234566665544445 788888899988887764
Q ss_pred cccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCC
Q 013578 331 RYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVET 385 (440)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~ 385 (440)
.............+ ......++. -+....+.++..+++.+..|.+..+.+..
T Consensus 226 ~~~~~Rg~kGv~~~--~~~~~~~~~-l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 226 FEKATRAKRGVVIL--RELKANPHR-ISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp SCCCCTTSCCEECS--CCCSSSCCC-EEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred ccccCCCCCCEECe--eecCCCCce-EEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 22111111111111 011111111 12233445555566667777665555543
No 358
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=83.50 E-value=19 Score=30.22 Aligned_cols=182 Identities=11% Similarity=0.103 Sum_probs=84.7
Q ss_pred EEEEeeCCceEEEEeCCCCceee-eeeCCCCcccEEEecCCCCeEEEEec----CCC-------EEEEEeEecCCCceee
Q 013578 221 IIASCSEGTDISIWHGKTGKLLG-NVDTNQLKNNMAAISPNGRFLAAAAF----TAD-------VKVWEIVYSKDGLVKA 288 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~-------i~i~d~~~~~~~~~~~ 288 (440)
+++.|+. .+..||..+++-.. .+..........+...++.+++.|+. ++. +..||.... .
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~------~ 89 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS------E 89 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTT------E
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCC------c
Confidence 4555553 38899998876543 11111122223334557788888873 121 555554322 1
Q ss_pred eeeeeeeeccccceEEEEEcCCCCEEEEEeCC-------CcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeE
Q 013578 289 VTSVMQLKGHKSAVTWLCFAPNSEQIITASKD-------GTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRL 361 (440)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 361 (440)
+..+..+......-..+.+ ++..++.|+.+ ..+.+||..+..-... ...+.+ ..+| ++
T Consensus 90 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-----~~~p~~---r~~~-----~~ 154 (318)
T 2woz_A 90 WVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV-----KNLPIK---VYGH-----NV 154 (318)
T ss_dssp EEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEE-----CCCSSC---EESC-----EE
T ss_pred EEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeEC-----CCCCCc---cccc-----EE
Confidence 2222222211111222223 56677777754 2477788875432210 001100 1111 12
Q ss_pred EeCCCCCEEEEec-------CCEEEEEEcCCcc--chhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCC-----C
Q 013578 362 SLSSDGKILAATH-------GSTLQWLSVETGK--VLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVD-----K 427 (440)
Q Consensus 362 ~~s~~g~~l~~~~-------~~~i~i~d~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~D-----g 427 (440)
+. .++++++.|. -..+.+||..+.+ .+..+.... .....+.+ ++ .+++.||.+ .
T Consensus 155 ~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~--~~--------~iyv~GG~~~~~~~~ 222 (318)
T 2woz_A 155 IS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPR-SMFGVAIH--KG--------KIVIAGGVTEDGLSA 222 (318)
T ss_dssp EE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCC-BSCEEEEE--TT--------EEEEEEEEETTEEEE
T ss_pred EE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCc-ccceEEEE--CC--------EEEEEcCcCCCCccc
Confidence 22 4666666543 1468999988764 222221111 11122222 33 677777754 3
Q ss_pred eEEEEeCCCC
Q 013578 428 KVKLWLAPSL 437 (440)
Q Consensus 428 ~i~vw~~~~~ 437 (440)
.+.+||+.+.
T Consensus 223 ~~~~yd~~~~ 232 (318)
T 2woz_A 223 SVEAFDLKTN 232 (318)
T ss_dssp EEEEEETTTC
T ss_pred eEEEEECCCC
Confidence 4667887654
No 359
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=83.22 E-value=1.6 Score=39.80 Aligned_cols=77 Identities=16% Similarity=0.153 Sum_probs=55.6
Q ss_pred EEEeecccccccCCCCCeEEEEeeCCceEEEEeCCCC------ce-------eeeeeCCCCcccEEEecCCCCeEEEEec
Q 013578 203 ILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTG------KL-------LGNVDTNQLKNNMAAISPNGRFLAAAAF 269 (440)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~------~~-------~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 269 (440)
+.....+..+-.+|||+++++++-.+.++.++|.+.. +. ....+. .......+|.++|+-..+..-
T Consensus 319 iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~~G~aYTtlfi 397 (638)
T 3sbq_A 319 VPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDGRGNAYTTLFI 397 (638)
T ss_dssp EEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECSSSEEEEEETT
T ss_pred EeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECCCCceEeeeee
Confidence 3444456777789999988888889999999998732 11 223333 233456899999966666678
Q ss_pred CCCEEEEEeEe
Q 013578 270 TADVKVWEIVY 280 (440)
Q Consensus 270 dg~i~i~d~~~ 280 (440)
|.+|.-|++..
T Consensus 398 dSqvvkWni~~ 408 (638)
T 3sbq_A 398 DSQVVKWNMEE 408 (638)
T ss_dssp TTEEEEEEHHH
T ss_pred cceEEEEeccH
Confidence 99999999864
No 360
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=82.96 E-value=5.7 Score=39.62 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=29.5
Q ss_pred cceeEEEEccCCCEEEEeeCCCcEEEEecCCCCC
Q 013578 92 DSVTGLCFSSDGKCLATACADGVIRVHKLDDASS 125 (440)
Q Consensus 92 ~~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~ 125 (440)
..|.+++..++..+++|-+.|+++|+|++.++..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~ 269 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQC 269 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCe
Confidence 3577888888889999999999999999998754
No 361
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=80.91 E-value=24 Score=29.56 Aligned_cols=171 Identities=11% Similarity=0.030 Sum_probs=84.3
Q ss_pred CCCCCeEEEEe---eCCceEEEEeCCCCceeeeeeCCCCcccEEEecCCCCeEEEEec-CCCEEEEEeEecCCCceeeee
Q 013578 215 TADGSTIIASC---SEGTDISIWHGKTGKLLGNVDTNQLKNNMAAISPNGRFLAAAAF-TADVKVWEIVYSKDGLVKAVT 290 (440)
Q Consensus 215 ~~~~~~~l~s~---~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~ 290 (440)
+++++.+..+- .....|...++... ....+..+.. ..++++++.|+-.+. ..+|...++.... . +
T Consensus 112 s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs-~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~----~--~ 180 (302)
T 3s25_A 112 SLIGNYIYYLHYDTQTATSLYRIRIDGE-EKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQS----E--A 180 (302)
T ss_dssp EEETTEEEEEEESSSSCEEEEEEETTSC-CCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTE----E--E
T ss_pred EEeCCEEEEEeecCCCCceEEEEECCCC-CeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCC----E--E
Confidence 55666455544 34556777777633 3334433322 456788888887765 4555555543221 1 1
Q ss_pred eeeeeeccccceEEEEEcCCCCEEEEEeCCC--cEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCC
Q 013578 291 SVMQLKGHKSAVTWLCFAPNSEQIITASKDG--TLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGK 368 (440)
Q Consensus 291 ~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 368 (440)
.+ +. +... ..++|++.+|+-...++ .|..-++..... ..+ ... . + ..|+|++.
T Consensus 181 ~l--~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~--------~~L-----t~~--~--~--~~~~~~g~ 235 (302)
T 3s25_A 181 LF--YD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP--------VVL-----TEA--N--I--EHYNVYGS 235 (302)
T ss_dssp EE--EC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC--------EEC-----SCS--C--E--EEEEEETT
T ss_pred EE--eC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe--------EEE-----eCC--C--c--ceEEECCC
Confidence 11 22 2222 23568888887665433 454445543211 111 000 0 1 34788888
Q ss_pred EEEEec---CCEEEEEEcCCccchhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeC
Q 013578 369 ILAATH---GSTLQWLSVETGKVLDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLA 434 (440)
Q Consensus 369 ~l~~~~---~~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~ 434 (440)
.|.-+. .+.|..-++.... ...+..+ .+..+....+ .+..+--..+.|..-++
T Consensus 236 ~Iy~~~~~~~~~i~~~~~DG~~-r~~l~~~---~~~~i~i~~d---------~Iy~td~~~~~i~~~~~ 291 (302)
T 3s25_A 236 LIFYQRGGDNPALCVVKNDGTG-FKELAKG---EFCNINVTSQ---------YVYFTDFVSNKEYCTST 291 (302)
T ss_dssp EEEEEECSSSCEEEEEETTSCC-CEEEEES---CEEEEEECSS---------EEEEEETTTCCEEEEES
T ss_pred EEEEEECCCCcEEEEEECCCCc-cEEeeCC---ccceEEEeCC---------EEEEEECCCCeEEEEEC
Confidence 777542 3566666664433 2333211 3445555444 34444444455444443
No 362
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=80.58 E-value=28 Score=30.24 Aligned_cols=130 Identities=15% Similarity=0.165 Sum_probs=65.5
Q ss_pred ccceEEEEEc---CC----CCEEEEE-eCCCcEEEEecCccccccCCCCccccccccccCCCCCe----eeeeeEEeCCC
Q 013578 299 KSAVTWLCFA---PN----SEQIITA-SKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGAT----LQYDRLSLSSD 366 (440)
Q Consensus 299 ~~~v~~~~~~---p~----~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~s~~ 366 (440)
.+.+..+.+. |+ +.+++.. +..+.|.++|+.+++.-+........-........+.. ..+..++++|+
T Consensus 151 ~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~ 230 (381)
T 3q6k_A 151 PTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDR 230 (381)
T ss_dssp GGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCC
T ss_pred CCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCC
Confidence 3457777776 22 3344333 35678999999876543211100000000001111211 35778999998
Q ss_pred ----CCEEEEecCCEEEEEEcCC-----ccchhhhh-ccccC---CeEEEEec-CCCCCCCCCcceEEEEeeCCCeEEEE
Q 013578 367 ----GKILAATHGSTLQWLSVET-----GKVLDTAE-KAHEG---EITCMAWA-PKTIPMGNQQVSVLATSSVDKKVKLW 432 (440)
Q Consensus 367 ----g~~l~~~~~~~i~i~d~~~-----~~~~~~~~-~~h~~---~v~~v~~~-~~~~~~~~~~~~~l~t~~~Dg~i~vw 432 (440)
++.|....-..-++|.+.+ ......++ .+..+ .-..++.. .+| .++++--+...|..|
T Consensus 231 ~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G--------~ly~~~~~~~aI~~w 302 (381)
T 3q6k_A 231 DSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTK--------VIFFAEANTKQVSCW 302 (381)
T ss_dssp CTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTC--------EEEEEESSSSEEEEE
T ss_pred cCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCC--------eEEEEeccCCeEEEE
Confidence 7777765432333333322 11111110 12222 23345564 455 677777788999999
Q ss_pred eCCC
Q 013578 433 LAPS 436 (440)
Q Consensus 433 ~~~~ 436 (440)
+...
T Consensus 303 ~~~~ 306 (381)
T 3q6k_A 303 NTQK 306 (381)
T ss_dssp ETTS
T ss_pred eCCC
Confidence 9865
No 363
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=77.19 E-value=36 Score=29.62 Aligned_cols=201 Identities=10% Similarity=0.062 Sum_probs=99.5
Q ss_pred EEEEeeCCceEEEEeCCCC-c-------ee---eeee-CCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCC-C--c
Q 013578 221 IIASCSEGTDISIWHGKTG-K-------LL---GNVD-TNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKD-G--L 285 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~-~-------~~---~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~--~ 285 (440)
..+.-..||.|+.|-.... + .. ..+. .....+..++++.-....++-..||.|+.|-...... + .
T Consensus 64 ~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~ 143 (389)
T 3kci_A 64 TLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGN 143 (389)
T ss_dssp EEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSS
T ss_pred eEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCC
Confidence 4444566788888853321 1 00 1111 1122344566777677777788899999997543210 0 0
Q ss_pred eeeeeeeeeeecc-ccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeC
Q 013578 286 VKAVTSVMQLKGH-KSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLS 364 (440)
Q Consensus 286 ~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 364 (440)
.........+... ...|..++.. ..+.+....||.|..|-.....++..........+..+.... ...|..++..
T Consensus 144 ~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~--~~~v~~ia~G 219 (389)
T 3kci_A 144 RSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ--GHRVVDIACG 219 (389)
T ss_dssp CCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT--TSCEEEEEEC
T ss_pred CccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccC--CCeEEEEEEc
Confidence 0000111111111 2356677663 445666778999999987654433221111111111111111 1234555554
Q ss_pred C-CCCEEEEecCCEEEEEEcCCccch-----------hhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEE
Q 013578 365 S-DGKILAATHGSTLQWLSVETGKVL-----------DTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLW 432 (440)
Q Consensus 365 ~-~g~~l~~~~~~~i~i~d~~~~~~~-----------~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw 432 (440)
. +...++...++.|+.|-....-.+ ..+.......|..|+.... ..+.-..||.|..|
T Consensus 220 ~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~----------hs~alt~~G~v~~w 289 (389)
T 3kci_A 220 SGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ----------FSVALTKSGAVYTW 289 (389)
T ss_dssp CSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT----------EEEEEETTSCEEEE
T ss_pred CCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC----------EEEEEeCCCeEEEE
Confidence 4 344566677899998865432111 1111112224666666554 33333678999999
Q ss_pred eCC
Q 013578 433 LAP 435 (440)
Q Consensus 433 ~~~ 435 (440)
-..
T Consensus 290 G~n 292 (389)
T 3kci_A 290 GKG 292 (389)
T ss_dssp ECC
T ss_pred eCC
Confidence 653
No 364
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=75.90 E-value=35 Score=28.72 Aligned_cols=197 Identities=8% Similarity=0.031 Sum_probs=104.5
Q ss_pred EEEEeeCCceEEEEeCCCCcee-------e--eeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCcee----
Q 013578 221 IIASCSEGTDISIWHGKTGKLL-------G--NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVK---- 287 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~-------~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---- 287 (440)
++++.+.+|.|+-..+...+.. . .+.. ...+..+........++..+..|.++-+....-......
T Consensus 10 ~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~ 88 (312)
T 1suu_A 10 IVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQ 88 (312)
T ss_dssp EEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------C
T ss_pred EEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCc
Confidence 7888899999998866433211 1 1122 233444444555667888888998777665321100000
Q ss_pred eeeeeeeeeccccceEEEEEcC---CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeC
Q 013578 288 AVTSVMQLKGHKSAVTWLCFAP---NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLS 364 (440)
Q Consensus 288 ~~~~~~~~~~h~~~v~~~~~~p---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 364 (440)
.......+.. ...|.++...+ +..+|+..+.+|.++.-.+....... ......+ .......-+......
T Consensus 89 ~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r--~~G~~~i-----~L~~~d~lv~~~~~~ 160 (312)
T 1suu_A 89 NISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVK--SRGVIVI-----KLNDKDFVTSAEIVF 160 (312)
T ss_dssp BGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC------CEECB-----CCCTTCCEEEEEEEC
T ss_pred ChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccC--CCcEEEE-----ecCCCCEEEEEEEeC
Confidence 0000112322 23455543332 45678888999999998876432211 0111111 111112223333345
Q ss_pred CCCCEEEEecCCEEEEEEcCCccc---------hhhhhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 365 SDGKILAATHGSTLQWLSVETGKV---------LDTAEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 365 ~~g~~l~~~~~~~i~i~d~~~~~~---------~~~~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
++..+++.+.+|.+..+....-.. .-.+. ..+.|..+....++ ..|++.+..|..+...+.
T Consensus 161 ~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~--~~d~vv~~~~v~~~--------~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 161 KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK--EGDLFVKVLSVKEN--------PYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC--TTCCEEEEEECTTC--------SEEEEEETTSEEEEEEGG
T ss_pred CCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC--CCCEEEEEEEECCC--------CeEEEEECCCceEEEEHH
Confidence 555677777888888887654211 12221 24456666554433 467888889998888775
Q ss_pred C
Q 013578 436 S 436 (440)
Q Consensus 436 ~ 436 (440)
.
T Consensus 231 e 231 (312)
T 1suu_A 231 K 231 (312)
T ss_dssp G
T ss_pred H
Confidence 3
No 365
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=71.13 E-value=75 Score=30.47 Aligned_cols=192 Identities=11% Similarity=0.039 Sum_probs=94.4
Q ss_pred cCCCCCeEEEEeeCC----ceEEEEeCCCCceeee-eeCCCC--------cccEEEecCCCCeEEEEec-----------
Q 013578 214 GTADGSTIIASCSEG----TDISIWHGKTGKLLGN-VDTNQL--------KNNMAAISPNGRFLAAAAF----------- 269 (440)
Q Consensus 214 ~~~~~~~~l~s~~~d----~~i~vwd~~~~~~~~~-~~~~~~--------~v~~~~~s~~~~~l~~~~~----------- 269 (440)
++|+++..+++-+.. ..++++|+.+++.+.. +. ... ....++|-.+. .++.+..
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~-~~~~~~~~~~~~~~~~~~ 214 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKD-TIIFNLVLHKNEITSSLY 214 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETT-EEEECCCCSTTCBCTTSS
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCC-EEEEEeCCCCCCcCcCCC
Confidence 478888777765544 4599999999987632 22 111 11344776344 4444321
Q ss_pred CCCEEEEEeEecCCCceeeeeeeeeeeccccc-eEEEEEcCCCCE-----EEEEeCC---CcEEEEecCccccccCCCCc
Q 013578 270 TADVKVWEIVYSKDGLVKAVTSVMQLKGHKSA-VTWLCFAPNSEQ-----IITASKD---GTLRVWNINVRYHLDEDPKT 340 (440)
Q Consensus 270 dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~p~~~~-----l~s~~~d---g~i~iwd~~~~~~~~~~~~~ 340 (440)
-.+|+.|.+.+... . ....+.+.... -.+...++++++ +++.+.+ ..+.+.|..... ..
T Consensus 215 ~~~v~~~~~Gt~~~----~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~------~~ 282 (711)
T 4hvt_A 215 PNSLYIWKRGESIE----K--AKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKN------LK 282 (711)
T ss_dssp BCEEEEEETTSCGG----G--CEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSS------CE
T ss_pred CCEEEEEECCCChH----H--CeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCC------Cc
Confidence 13466666543321 1 11223322222 234555666652 4444422 345555544210 00
Q ss_pred cccccccccCCCCCeeeeeeEEeCCCCCEEEEe-----------cCCEEEEEEcCCcc-------chhh-hhccccCCeE
Q 013578 341 LKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT-----------HGSTLQWLSVETGK-------VLDT-AEKAHEGEIT 401 (440)
Q Consensus 341 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-----------~~~~i~i~d~~~~~-------~~~~-~~~~h~~~v~ 401 (440)
...+..+ .. . .+..+.++.+++.. ..+.|...++.++. .... +.......+.
T Consensus 283 ~~~l~~~-----~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 353 (711)
T 4hvt_A 283 LQKINMP-----SD-A---TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFN 353 (711)
T ss_dssp EEECCSC-----TT-C---EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEE
T ss_pred ceEeecC-----Cc-c---eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEE
Confidence 0111100 00 1 12234455555532 25678888887642 1122 2222344688
Q ss_pred EEEecCCCCCCCCCcceEEEEeeCCCe--EEEEeCCCC
Q 013578 402 CMAWAPKTIPMGNQQVSVLATSSVDKK--VKLWLAPSL 437 (440)
Q Consensus 402 ~v~~~~~~~~~~~~~~~~l~t~~~Dg~--i~vw~~~~~ 437 (440)
.+.|..+ .++++...++. +.++++.++
T Consensus 354 ~~~~~~~---------~l~~~~~~~~~~~l~~~~~~~g 382 (711)
T 4hvt_A 354 FISTTKD---------RVFLATYDNVVAKVVTFTLENE 382 (711)
T ss_dssp EEEECSS---------CEEEEEEETTEEEEEEECEETT
T ss_pred EEEEECC---------EEEEEEEECCEEEEEEEECCCC
Confidence 8999987 57888877875 555665433
No 366
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=69.18 E-value=47 Score=27.31 Aligned_cols=156 Identities=7% Similarity=-0.020 Sum_probs=84.5
Q ss_pred EEEEeeCCceEEEEeCCCCc------eeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCC-Cceeeeeeee
Q 013578 221 IIASCSEGTDISIWHGKTGK------LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKD-GLVKAVTSVM 293 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~ 293 (440)
.++..+.+|.++...+.... ....+.. ...+..+........++..+.+|.+..+....-.. +.........
T Consensus 82 ~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i 160 (276)
T 3no0_A 82 RLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGI 160 (276)
T ss_dssp EEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECC
T ss_pred EEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEE
Confidence 78889999999998765432 1122222 23444454555666888889999988887532111 0000001122
Q ss_pred eeeccccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEe
Q 013578 294 QLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAAT 373 (440)
Q Consensus 294 ~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 373 (440)
.+.. ...|.++...+++..++..+..|.++...+...............+ . .+. .-+.......+..+++.+
T Consensus 161 ~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-----~-~~~-~lv~~~~~~~~~~i~~~t 232 (276)
T 3no0_A 161 KLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-----G-TKD-TLVDLIPIKEEVELLITT 232 (276)
T ss_dssp CCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-----C-SSS-CEEEEEEESSEEEEEEEE
T ss_pred ccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-----c-CCC-cEEEEEEeCCCCEEEEEc
Confidence 3332 3556666655667788899999999998876433222111111111 1 111 112222334445566666
Q ss_pred cCCEEEE--EEcCC
Q 013578 374 HGSTLQW--LSVET 385 (440)
Q Consensus 374 ~~~~i~i--~d~~~ 385 (440)
.+|.+.. ++...
T Consensus 233 ~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 233 KNGKAFYDKINQKD 246 (276)
T ss_dssp TTSCEEEEEEEGGG
T ss_pred CCCeEEEeeeCHHH
Confidence 6676666 66543
No 367
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=65.42 E-value=17 Score=33.48 Aligned_cols=53 Identities=19% Similarity=0.309 Sum_probs=37.4
Q ss_pred eeeeEEeCCCCCEEEEecC-------------CEEEEEEcCCccchhhhhccccCCeEEEEecCCC
Q 013578 357 QYDRLSLSSDGKILAATHG-------------STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKT 409 (440)
Q Consensus 357 ~v~~~~~s~~g~~l~~~~~-------------~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~ 409 (440)
....|.|.++|.+.++.+. +.+..++..++++...+.......++.++|+||+
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ 542 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQ 542 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTS
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCC
Confidence 3457999999997775331 2677788878876554421234579999999998
No 368
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=62.37 E-value=77 Score=27.40 Aligned_cols=160 Identities=9% Similarity=0.010 Sum_probs=83.4
Q ss_pred CCCCeEEEEeeCCceEEEEeCCC---------CceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCC--
Q 013578 216 ADGSTIIASCSEGTDISIWHGKT---------GKLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDG-- 284 (440)
Q Consensus 216 ~~~~~~l~s~~~d~~i~vwd~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~-- 284 (440)
++.. ++++.+.+|.|+--.+.+ +.....+.. ...+..+........|+..+..|+++-+....-...
T Consensus 5 ~~e~-~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 5 APED-VVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCC-EEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred cCCC-EEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 3444 888899999999765421 122222332 334555555556677888888998776654211100
Q ss_pred --ceeeeeeeeeeeccccceEEEEEcC---CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeee
Q 013578 285 --LVKAVTSVMQLKGHKSAVTWLCFAP---NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYD 359 (440)
Q Consensus 285 --~~~~~~~~~~~~~h~~~v~~~~~~p---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 359 (440)
.-.....+..+. ....|.++..-. ++.+|+.++..|.++.-.+....... ......+. + .....-+.
T Consensus 83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~--~~G~~ai~--L---~~~d~lv~ 154 (370)
T 3l6v_A 83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRL--ARGKIAIN--L---DEGDALVG 154 (370)
T ss_dssp TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCC--TTCEESSC--C---CTTCCEEE
T ss_pred ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhccc--CCceEEEE--e---CCCCEEEE
Confidence 000001111233 234565554332 45689999999999999876443211 11111111 1 11122233
Q ss_pred eEEeCCCCCEEEEecCCEEEEEEcCC
Q 013578 360 RLSLSSDGKILAATHGSTLQWLSVET 385 (440)
Q Consensus 360 ~~~~s~~g~~l~~~~~~~i~i~d~~~ 385 (440)
......+..+++.+..|.+..++...
T Consensus 155 v~~~~~~~~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 155 VALTDGDRDVLLFASNGKTVRFGEST 180 (370)
T ss_dssp EEEECSCCEEEEEETTSEEEEEEGGG
T ss_pred EEEeCCCceEEEEeCCCeEEEEEccc
Confidence 33334455566677788777776543
No 369
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=61.84 E-value=70 Score=26.74 Aligned_cols=198 Identities=6% Similarity=-0.005 Sum_probs=102.1
Q ss_pred EEEEeeCCceEEEEeCCCCceee---------eeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCce-eeee
Q 013578 221 IIASCSEGTDISIWHGKTGKLLG---------NVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLV-KAVT 290 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~~~---------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~ 290 (440)
++++.+.+|.|+--.+.+.+..+ .+.. ...+..+........|+..+..|.++-+....-..... ....
T Consensus 5 ~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~ 83 (307)
T 1zi0_A 5 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGR 83 (307)
T ss_dssp EEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCE
T ss_pred EEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCe
Confidence 67888999999887765432211 1122 23344444445566777888889876665422111100 0000
Q ss_pred e---eeeeeccccceEEEEEc---CCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeC
Q 013578 291 S---VMQLKGHKSAVTWLCFA---PNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLS 364 (440)
Q Consensus 291 ~---~~~~~~h~~~v~~~~~~---p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 364 (440)
. ...+. ....|.++..- .++.+++..+.+|.++.-.+........ .....+. ......-+......
T Consensus 84 ~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r--~G~~~i~-----l~~~d~lv~~~~~~ 155 (307)
T 1zi0_A 84 PIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRT--AGKVAIK-----LVDGDELIGVDLTS 155 (307)
T ss_dssp EGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCT--TCEESSC-----CCTTCCEEEEEEEC
T ss_pred EhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhcccc--CCeEEEE-----ECCCCEEEEEEEeC
Confidence 1 11222 23456555432 3456788999999999988764322111 1111111 11112223333445
Q ss_pred CCCCEEEEecCCEEEEEEcCCccchhh-------hhccccCCeEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCC
Q 013578 365 SDGKILAATHGSTLQWLSVETGKVLDT-------AEKAHEGEITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAP 435 (440)
Q Consensus 365 ~~g~~l~~~~~~~i~i~d~~~~~~~~~-------~~~~h~~~v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~ 435 (440)
.+..+++.++.|.+..++...-..... +.-...+.|.++....++ ..|++.+..|.++-.++.
T Consensus 156 ~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~--------~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 156 GEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGD--------GAILTATQNGYGKRTAVA 225 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSS--------CEEEEEETTSEEEEECGG
T ss_pred CCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCC--------CEEEEEEcCCceEEEEHH
Confidence 555677777888887777643222111 111134567776655443 568888889998887764
No 370
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=61.61 E-value=18 Score=33.58 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=37.2
Q ss_pred eeeEEeCCCCCEEEEecC-------------CEEEEEEcCCccchhhhhccccCCeEEEEecCCC
Q 013578 358 YDRLSLSSDGKILAATHG-------------STLQWLSVETGKVLDTAEKAHEGEITCMAWAPKT 409 (440)
Q Consensus 358 v~~~~~s~~g~~l~~~~~-------------~~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~ 409 (440)
.-.|+|+|.|.++++-+. +.+.+.+..+++....+...-...++.++|+||+
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg 542 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQ 542 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTS
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCC
Confidence 346899999997776432 3466677777776555533345689999999997
No 371
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=61.47 E-value=14 Score=37.89 Aligned_cols=36 Identities=14% Similarity=0.258 Sum_probs=29.6
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccC
Q 013578 301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDE 336 (440)
Q Consensus 301 ~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~ 336 (440)
.+.+++..++..++++-+.|+++|+|++.++.++..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t 274 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 274 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEe
Confidence 445666777888999999999999999998877543
No 372
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=56.07 E-value=5.5 Score=40.75 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=27.9
Q ss_pred ceeEEEEccCCCEEEEeeCCCcEEEEecCCCCC
Q 013578 93 SVTGLCFSSDGKCLATACADGVIRVHKLDDASS 125 (440)
Q Consensus 93 ~V~~l~~s~dg~~l~t~s~dg~v~vW~~~~~~~ 125 (440)
.|.+++..++..+++|-+.|+++|+|++.++..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~ 271 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQC 271 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCe
Confidence 456667777889999999999999999998754
No 373
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=55.54 E-value=85 Score=25.73 Aligned_cols=163 Identities=12% Similarity=-0.010 Sum_probs=85.3
Q ss_pred CcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC-CCCEEEEEeCCCcEEEEec
Q 013578 250 LKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP-NSEQIITASKDGTLRVWNI 328 (440)
Q Consensus 250 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~dg~i~iwd~ 328 (440)
..+..+........|+.-+.+|.++--.+..-.... ...+ +. ....|..+.... +..+++..+.+|.++...+
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~---~~~l--l~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l 97 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGS---KVSL--KS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPL 97 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSE---ECCC--SS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEG
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCc---cccc--CC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEH
Confidence 344444444455567777778876643321111110 0012 33 345566664421 4678999999999999988
Q ss_pred CccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCEEEEecCCEEEEEEcCCccc---------hhhhhccccCC
Q 013578 329 NVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKILAATHGSTLQWLSVETGKV---------LDTAEKAHEGE 399 (440)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~i~i~d~~~~~~---------~~~~~~~h~~~ 399 (440)
.... ... .....+ .......-+.....+.+..+++.+..|.+..+....-.. .-.+. ..+.
T Consensus 98 ~~~~-~~~--~G~~~i-----~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~--~~d~ 167 (276)
T 3no0_A 98 AEFE-YKA--QGMPII-----KLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE--KNDE 167 (276)
T ss_dssp GGTT-TCS--TTEECS-----CCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC--TTCC
T ss_pred HHhh-hhc--CCeEEE-----ecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC--CCCE
Confidence 6443 111 111111 111112222223333444566667788888877533221 11221 2345
Q ss_pred eEEEEecCCCCCCCCCcceEEEEeeCCCeEEEEeCCC
Q 013578 400 ITCMAWAPKTIPMGNQQVSVLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 400 v~~v~~~~~~~~~~~~~~~~l~t~~~Dg~i~vw~~~~ 436 (440)
|.++...+++ ..|+..+..|.++...+..
T Consensus 168 vv~~~~~~~~--------~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 168 TSGLRIWNGE--------PYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp EEEEEEESSC--------SEEEEEETTSCEEEEEGGG
T ss_pred EEEEEEeCCC--------CEEEEEeCCCcEEEeEHHH
Confidence 6665544443 5788888999998887654
No 374
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=51.20 E-value=45 Score=31.05 Aligned_cols=63 Identities=24% Similarity=0.345 Sum_probs=39.2
Q ss_pred ceeEEEEccCCCEEEEeeCC----------CcEEEEecCCCCCcceeeEEecCCCCCCCceEEEccCCCeEEEEe
Q 013578 93 SVTGLCFSSDGKCLATACAD----------GVIRVHKLDDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVAT 157 (440)
Q Consensus 93 ~V~~l~~s~dg~~l~t~s~d----------g~v~vW~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~ 157 (440)
..--|+|+|+|++++.-..+ +.-.+|-......+..++.. .+.+..++.++|+||++.|++.-
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~--~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV--GPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEE--CCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEe--CCCCccCcCeeECCCCCEEEEEE
Confidence 34678999999876654322 22345544433333222322 34567899999999999887654
No 375
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=47.56 E-value=23 Score=33.74 Aligned_cols=33 Identities=12% Similarity=0.414 Sum_probs=26.5
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEecCcccccc
Q 013578 301 AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLD 335 (440)
Q Consensus 301 ~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~ 335 (440)
.|.++.+ +..++++-+.|.++|+|+++++.++.
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~ 255 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQ 255 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEE
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEE
Confidence 4555555 47799999999999999999887653
No 376
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=45.11 E-value=1.4e+02 Score=25.17 Aligned_cols=200 Identities=8% Similarity=-0.003 Sum_probs=102.0
Q ss_pred EEEEeeCCceEEEEeCCCC----ceeeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCc----eeeeeee
Q 013578 221 IIASCSEGTDISIWHGKTG----KLLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGL----VKAVTSV 292 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~ 292 (440)
++++.+.+|.|+--.+... .....+.. ...+..+........|+..+..|.++-+....-.... -......
T Consensus 7 ~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~ 85 (323)
T 1wp5_A 7 VIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANI 85 (323)
T ss_dssp EEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGT
T ss_pred EEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhc
Confidence 7888899999987754321 11112222 2334444455566777888888987665542111000 0001111
Q ss_pred eeeeccccceEEE-EEcC--CCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeCCCCCE
Q 013578 293 MQLKGHKSAVTWL-CFAP--NSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLSSDGKI 369 (440)
Q Consensus 293 ~~~~~h~~~v~~~-~~~p--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 369 (440)
..+. ....|.++ ...+ ++.+|+..+.+|.++.-.+........ ......+. +. .+ ..-+.......+..+
T Consensus 86 i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r-~~G~~ai~--l~--e~-d~lv~~~~~~~~~~i 158 (323)
T 1wp5_A 86 IPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRY-SKPLTGIN--LK--ND-DQVVDVHLTDGMNEL 158 (323)
T ss_dssp SCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCC-SSCEECSC--CC--TT-CCEEEEEEECSCSEE
T ss_pred cCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccc-cCceEEEE--eC--CC-CEEEEEEEeCCCCEE
Confidence 1222 22345554 3332 256789999999999998764322110 11111111 11 11 222333333445556
Q ss_pred EEEecCCEEEEEEcCCccchhh-------hhccccCCeEEEEecCCCCCCCCCcce-EEEEeeCCCeEEEEeCCC
Q 013578 370 LAATHGSTLQWLSVETGKVLDT-------AEKAHEGEITCMAWAPKTIPMGNQQVS-VLATSSVDKKVKLWLAPS 436 (440)
Q Consensus 370 l~~~~~~~i~i~d~~~~~~~~~-------~~~~h~~~v~~v~~~~~~~~~~~~~~~-~l~t~~~Dg~i~vw~~~~ 436 (440)
++.+.+|.+..+....-..... +.-...+.|.++...+++ . .|++.+..|..+.-++..
T Consensus 159 ~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~--------~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 159 FLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSK--------DESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCT--------TCEEEEEETTSEEEEEEGGG
T ss_pred EEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCC--------CcEEEEEECCCceEEEEHHH
Confidence 7777788888777643221111 101133456666544433 3 677888888887766643
No 377
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=40.77 E-value=98 Score=28.64 Aligned_cols=39 Identities=13% Similarity=0.056 Sum_probs=28.8
Q ss_pred eEEEEeCCCCceeeeeeCC-CCcccEEEecCCCCeEEEEe
Q 013578 230 DISIWHGKTGKLLGNVDTN-QLKNNMAAISPNGRFLAAAA 268 (440)
Q Consensus 230 ~i~vwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~ 268 (440)
.|..++..+++....+... ...++.++|+||++.|+++-
T Consensus 510 ~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 510 QMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred eEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 5777777778766555433 35678999999999888774
No 378
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=39.11 E-value=1.5e+02 Score=23.88 Aligned_cols=155 Identities=11% Similarity=0.030 Sum_probs=78.3
Q ss_pred EEEEeeCCceEEEEeCCCCce-eeeeeCCCCcccEEEecCCCCeEEEEecCCCEEEEEeEecCCCce--eeeeeeeeeec
Q 013578 221 IIASCSEGTDISIWHGKTGKL-LGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLV--KAVTSVMQLKG 297 (440)
Q Consensus 221 ~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~~ 297 (440)
.+++.+.+|.|+--....... ...+.. ...+..+........|+..+..|.++-+....-..... ........+.
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke-~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~- 81 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKA-GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP- 81 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCT-TCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC-
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCC-CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC-
Confidence 566778888887765443211 112222 23333444444455677778889876655432111100 0110112233
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCcEEEEecCccccccCCCCccccccccccCCCCCeeeeeeEEeC--CCCCEEEEecC
Q 013578 298 HKSAVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDRLSLS--SDGKILAATHG 375 (440)
Q Consensus 298 h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~g~~l~~~~~ 375 (440)
....|.++....++.+|+..+..|.++...+......... ....+.+ .... .+-.+... .+..+++.+.+
T Consensus 82 ~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~--G~~~i~L-----~~~d-~lv~~~~~~~~~~~i~l~T~~ 153 (256)
T 1zvt_A 82 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRA--GKALITL-----PENA-HVMPPVVIEDASDMLLAITQA 153 (256)
T ss_dssp TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTT--CEECBCC-----CTTC-CBCCCEECCCTTCEEEEEETT
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcC--ceEEEEE-----CCCC-EEEEEEEecCCCCEEEEEcCC
Confidence 2346776644345667888999999999988643221111 1111111 1111 22233333 44556667778
Q ss_pred CEEEEEEcCC
Q 013578 376 STLQWLSVET 385 (440)
Q Consensus 376 ~~i~i~d~~~ 385 (440)
|.+..++...
T Consensus 154 G~~lrf~~~e 163 (256)
T 1zvt_A 154 GRMLMFPVSD 163 (256)
T ss_dssp SEEEEEEGGG
T ss_pred CeEEEEEHHH
Confidence 8888887643
No 379
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=35.72 E-value=28 Score=18.15 Aligned_cols=10 Identities=0% Similarity=0.109 Sum_probs=4.3
Q ss_pred HHHHHhcccc
Q 013578 19 AIIFFKSYFT 28 (440)
Q Consensus 19 ~~~~~~~~~~ 28 (440)
+.+.++++++
T Consensus 17 YFl~iRPQ~K 26 (37)
T 2rdd_B 17 YFMILRPQQK 26 (37)
T ss_dssp HHHTHHHHHH
T ss_pred HHHHhhhHHH
Confidence 3344444443
No 380
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=35.05 E-value=1.1e+02 Score=27.79 Aligned_cols=64 Identities=8% Similarity=0.023 Sum_probs=36.3
Q ss_pred CeEEEEecCCCEEEEEeEecCCCceeeeeeeeeee--ccccceEEEEEcCCCCEEEEEeCCCcEEE
Q 013578 262 RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLK--GHKSAVTWLCFAPNSEQIITASKDGTLRV 325 (440)
Q Consensus 262 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~l~s~~~dg~i~i 325 (440)
..++.|+.+|.|+=.-+.............+..+. ....+|..|.++++..+|+.++.++.++|
T Consensus 422 tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 422 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 45778888888753332211100000001111222 23578999999999999999998876665
No 381
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=34.36 E-value=1.2e+02 Score=28.03 Aligned_cols=75 Identities=8% Similarity=-0.024 Sum_probs=43.4
Q ss_pred ccEEEecC------CCCeEEEEecCCCEEEEEeEecCCC---ceeeeeeeeeeec--------cccceEEEEEcCCCCEE
Q 013578 252 NNMAAISP------NGRFLAAAAFTADVKVWEIVYSKDG---LVKAVTSVMQLKG--------HKSAVTWLCFAPNSEQI 314 (440)
Q Consensus 252 v~~~~~s~------~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~~~--------h~~~v~~~~~~p~~~~l 314 (440)
.+.+++.. ....++.|+.+|.|+=.-+.....+ .......+..+.. ...+|..|.++++...|
T Consensus 405 lT~IaVd~~~g~~~~ytVlFLGTd~G~l~Kvv~~~~~~~~~~~~~~iEEi~vf~~~~~~~~~~~~~pI~~L~ls~~~~~L 484 (565)
T 3oky_B 405 LTKIAVDNAAGPYQNHTVVFLGSEKGIILKFLARIGSSGFLNGSLFLEEMNVYNPEKCSYDGVEDKRIMGMQLDRASGSL 484 (565)
T ss_dssp EEEEEEEEEETTTTCEEEEEEEETTSEEEEEEECC-----CCCCEEEEEEECCCHHHHCBTTBCCCCCCEEEEEGGGTEE
T ss_pred eEEEEEEEEecCCCceEEEEEECCCCeEEEEEecCCCCccccccEEEEEEEEeccccccccccCCCceEEEEEcCCCCEE
Confidence 35666653 2357888999998753322211111 1111111222221 14578899999999999
Q ss_pred EEEeCCCcEEEE
Q 013578 315 ITASKDGTLRVW 326 (440)
Q Consensus 315 ~s~~~dg~i~iw 326 (440)
+.++.++.+++-
T Consensus 485 YV~s~~~V~qVP 496 (565)
T 3oky_B 485 YVAFSTCVIKVP 496 (565)
T ss_dssp EEECSSCEEEEE
T ss_pred EEEecCeEEEee
Confidence 999988777763
No 382
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=32.23 E-value=50 Score=17.04 Aligned_cols=29 Identities=17% Similarity=0.298 Sum_probs=13.2
Q ss_pred cchhHHHHHHHHHHHHHH--HHHhccccccc
Q 013578 3 PVLSITVVSVVLGALIAI--IFFKSYFTKRR 31 (440)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 31 (440)
|.+..++++++--...-+ ..+.+|+|+++
T Consensus 4 ~lL~GIVlGlipvtlaGLfv~Ay~QyrRg~~ 34 (37)
T 1q90_G 4 PLLCGIVLGLVPVTIAGLFVTAYLQYLRGDL 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred hhhhhHHHhhHHHHHHHHHHHHHHHHhhccc
Confidence 556666666654443333 34456666554
No 383
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=32.14 E-value=49 Score=17.52 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=11.2
Q ss_pred CCcchhHHHHHHHHHHHH
Q 013578 1 MDPVLSITVVSVVLGALI 18 (440)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (440)
|-|.+.-.+.+++.|+++
T Consensus 2 mTpSL~nFl~Sl~aG~vv 19 (39)
T 3arc_X 2 ITPSLKGFFIGLLSGAVV 19 (39)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHHHH
Confidence 556666666666666654
No 384
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=31.61 E-value=1.9e+02 Score=27.38 Aligned_cols=63 Identities=8% Similarity=0.037 Sum_probs=36.9
Q ss_pred CeEEEEecCCCEE-EEEeEecCCCceeeeeeeee--eeccccceEEEEEcCCCCEEEEEeCCCcEEE
Q 013578 262 RFLAAAAFTADVK-VWEIVYSKDGLVKAVTSVMQ--LKGHKSAVTWLCFAPNSEQIITASKDGTLRV 325 (440)
Q Consensus 262 ~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~i 325 (440)
..++.|+.+|.|+ +....... ........+.. .-....+|..|.++++..+|+.++.++.++|
T Consensus 430 tVlFLGT~~G~I~Kvv~~~~~~-~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 430 DVMFIGTDVGTVLKVVSVPKET-WHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEEETTSEEEEEEEEC-------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEECCCCeEEEEEEcCCCC-ccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 4677888899875 32221111 00000001111 2234568999999999999999998876665
No 385
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=30.51 E-value=1.6e+02 Score=27.40 Aligned_cols=63 Identities=6% Similarity=0.028 Sum_probs=37.8
Q ss_pred CeEEEEecCCCEEEEEeEecCCCc-eeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEE
Q 013578 262 RFLAAAAFTADVKVWEIVYSKDGL-VKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRV 325 (440)
Q Consensus 262 ~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~i 325 (440)
..++.|+.+|.|+=.-+....... ......+..+ ....+|..|.++++...|+.++.++.+++
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~-~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPF-RRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCC-SSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeecc-CCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 467788899987643332211100 1111111111 24568999999999999999888776665
No 386
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=28.69 E-value=3.5e+02 Score=24.96 Aligned_cols=165 Identities=12% Similarity=0.214 Sum_probs=84.6
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCcceeeEE------------ecCC---C----CCCCc--eEEEccCCCeEEEEeecCC
Q 013578 103 GKCLATACADGVIRVHKLDDASSKSFKFLR------------INLP---P----GGPPT--AVAFADNATSIVVATHNLS 161 (440)
Q Consensus 103 g~~l~t~s~dg~v~vW~~~~~~~~~~~~~~------------~~~~---~----~~~v~--~v~~~~~~~~l~~~~~~~~ 161 (440)
...++.|+.||.++.++.. +.+ .+..+. .... | .+.+. .+.+...-+.+++++....
T Consensus 85 ~~~VyvGaNDGmLHaF~a~-G~E-~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~Dv~~~g~wrtvLvggmg~G 162 (570)
T 3hx6_A 85 APRVYVGANDGMLHGFDTD-GNE-TFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVADAFFGGAWHTVLIGSLRAG 162 (570)
T ss_dssp CCEEEEECSSSCEEECCSS-CCC-CEEECCHHHHHHCC-------CCHHHHHHHHCCCEEEEEEETTEEEEEEEEECTTS
T ss_pred ccEEEEECCCceEEEECCC-CcE-EEEECCHHHHHHHHHHhccCccccCcceecCCCCEEEEEEeCCcceEEEEEecCCC
Confidence 4588899999999999877 332 111111 0000 1 11121 2223222345667776666
Q ss_pred cceEEeeccccccccccccccCCCCCCceeecccccccceeEEEeecccccccCCCCCeEEEEeeC------CceEEEEe
Q 013578 162 GCSLYMYGEEKAISTNEGKQQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSE------GTDISIWH 235 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~------d~~i~vwd 235 (440)
+..++..+...... +...|+......... -.......+.-..+++..++.++- ...|.+.|
T Consensus 163 G~~~yALDVT~P~~------------p~~LWe~~~~~~~~L-G~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d 229 (570)
T 3hx6_A 163 GKGLFALDVTDPAN------------IKLLWEIGVDQEPDL-GYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIID 229 (570)
T ss_dssp CSEEEEEECSSGGG------------CEEEEEEETTTCTTC-CBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEE
T ss_pred CcEEEEEECCCCCC------------CceeEEECCCCcccc-CccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEE
Confidence 66777666554321 334454431110000 000000111112345555555442 45799999
Q ss_pred CCCCceeeeeeCCCC-----cccEE-EecCCC----CeEEEEecCCCEEEEEeEecC
Q 013578 236 GKTGKLLGNVDTNQL-----KNNMA-AISPNG----RFLAAAAFTADVKVWEIVYSK 282 (440)
Q Consensus 236 ~~~~~~~~~~~~~~~-----~v~~~-~~s~~~----~~l~~~~~dg~i~i~d~~~~~ 282 (440)
+.+|..+..+..... .+..+ .+..++ ..+++|...|+|.-+|+....
T Consensus 230 ~~tG~li~~i~~~~~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~~ 286 (570)
T 3hx6_A 230 METGAITRKLEVTGRTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAGK 286 (570)
T ss_dssp TTTCCEEEEEEECCSTTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCSS
T ss_pred CCCCceEEEEecCCCCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCCC
Confidence 999999988754321 12222 233333 478999999988777776543
No 387
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=27.59 E-value=73 Score=16.73 Aligned_cols=22 Identities=18% Similarity=0.572 Sum_probs=14.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHH
Q 013578 2 DPVLSITVVSVVLGALIAIIFF 23 (440)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ 23 (440)
-|.++++++++..|-...++++
T Consensus 9 ~p~i~lII~~vmaGiIG~IllI 30 (40)
T 1afo_A 9 EPEITLIIFGVMAGVIGTILLI 30 (40)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHH
Confidence 4777888887777766655544
No 388
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=25.59 E-value=2.2e+02 Score=25.74 Aligned_cols=56 Identities=7% Similarity=0.023 Sum_probs=36.3
Q ss_pred eEEEEeeCCceEEEEeCC-CCc-------eeeeeeC--CCCcccEEEecCCCCeEEEEecCCCEEE
Q 013578 220 TIIASCSEGTDISIWHGK-TGK-------LLGNVDT--NQLKNNMAAISPNGRFLAAAAFTADVKV 275 (440)
Q Consensus 220 ~~l~s~~~d~~i~vwd~~-~~~-------~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~i 275 (440)
..++.|+.+|.|.-.-+. .+. .+..+.. ...+|..+.++++...|++++.++-++|
T Consensus 422 tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 422 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 367788888887554332 211 2223332 3468899999999999999987765443
No 389
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=25.43 E-value=3.2e+02 Score=23.41 Aligned_cols=152 Identities=11% Similarity=-0.025 Sum_probs=0.0
Q ss_pred CCCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcC-CCCEEEEEeCCC----cEEEEecCccccc
Q 013578 260 NGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAP-NSEQIITASKDG----TLRVWNINVRYHL 334 (440)
Q Consensus 260 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~dg----~i~iwd~~~~~~~ 334 (440)
....|.+|+..| +.+++-.... ..+.... .......|.+|+++| +...|..++..| .|...+=..
T Consensus 21 ~~g~l~vgt~~G-l~~~~~~~~g----~~W~~~~-~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G---- 90 (394)
T 3b7f_A 21 GPVMLLVATIKG-AWFLASDPAR----RTWELRG-PVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGG---- 90 (394)
T ss_dssp SCCEEEEEETTE-EEEEEECTTS----CSEEEEE-EESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTT----
T ss_pred CCCEEEEEecCc-eEEEECCCCC----CCceECC-ccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCC----
Q ss_pred cCCCCccccccccccCCCCCee-------eeeeEEeCC---CCCEEEEecCCEEEEEEcCCccchhhhh-----------
Q 013578 335 DEDPKTLKVLPIPLLDSNGATL-------QYDRLSLSS---DGKILAATHGSTLQWLSVETGKVLDTAE----------- 393 (440)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~-------~v~~~~~s~---~g~~l~~~~~~~i~i~d~~~~~~~~~~~----------- 393 (440)
.....+............ .|..+++.| .+.+.+.+..+.|...+-....-.....
T Consensus 91 ----~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~ 166 (394)
T 3b7f_A 91 ----GNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWT 166 (394)
T ss_dssp ----SCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHH
T ss_pred ----CCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccc
Q ss_pred ------ccccCCeEEEEecC-CCCCCCCCcceEEEEeeCCCeEEEEe
Q 013578 394 ------KAHEGEITCMAWAP-KTIPMGNQQVSVLATSSVDKKVKLWL 433 (440)
Q Consensus 394 ------~~h~~~v~~v~~~~-~~~~~~~~~~~~l~t~~~Dg~i~vw~ 433 (440)
......+.+|.++| +. ..|..+..++.|...+
T Consensus 167 ~~~~~g~~~~~~i~~i~~d~~~~--------~~l~vg~~~ggl~~s~ 205 (394)
T 3b7f_A 167 GGEQDGTPDGPKMHSILVDPRDP--------KHLYIGMSSGGVFEST 205 (394)
T ss_dssp CCC----CCCCEEEEEEECTTCT--------TCEEEEEETBEEEEES
T ss_pred cccccCCCCCCceeEEEECCCCC--------CEEEEEECCCCEEEEC
No 390
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=23.26 E-value=48 Score=17.11 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=9.8
Q ss_pred cchhHHHHHHHHHHHHH--HHHHhccccccc
Q 013578 3 PVLSITVVSVVLGALIA--IIFFKSYFTKRR 31 (440)
Q Consensus 3 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 31 (440)
|.+..++++++--...- +..+.+|+|+++
T Consensus 4 plL~GIVlGlipvtl~GLfv~Ay~QyrRg~q 34 (37)
T 1vf5_G 4 PLLDGLVLGLVFATLGGLFYAAYQQYKRPNE 34 (37)
T ss_dssp -----CHHHHHHHHHHHHTHHHHHHTCC---
T ss_pred hhhhhHHHhhHHHHHHHHHHHHHHHHhhccc
Confidence 44555555554333332 234556666544
No 391
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=22.79 E-value=2.2e+02 Score=26.12 Aligned_cols=63 Identities=13% Similarity=0.030 Sum_probs=38.5
Q ss_pred CCeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceE-EEEEcCCCCEEEEEeCCCcEEE
Q 013578 261 GRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVT-WLCFAPNSEQIITASKDGTLRV 325 (440)
Q Consensus 261 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~p~~~~l~s~~~dg~i~i 325 (440)
...++.|+.+|.|+=..+...... ...... ..+.....+|. .|.+++++.+|+.++.++.++|
T Consensus 413 ~tV~flGT~~G~l~KV~l~~~~~~-~~~~e~-~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 413 YSVVFVGTKSGKLKKIRADGPPHG-GVQYEM-VSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp EEEEEEEETTSEEEEEEEEETTTE-EEEEEE-EECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred eEEEEEEcCCCeEEEEEeCCCCcc-ceeEEE-EEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 356788899998766555432211 011111 12222346785 8999999999999988765554
No 392
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=22.24 E-value=3e+02 Score=26.06 Aligned_cols=60 Identities=8% Similarity=0.078 Sum_probs=36.7
Q ss_pred CeEEEEecCCCEEEEEeEecCCCceeeeeeeeeeeccccceEEEEEcCCC--CEEEEEeCCCcEEE
Q 013578 262 RFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKSAVTWLCFAPNS--EQIITASKDGTLRV 325 (440)
Q Consensus 262 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~--~~l~s~~~dg~i~i 325 (440)
..++.|+.+|.|.=.-.... . ......+..+ ....+|..|.++++. .+|+.++.++.+++
T Consensus 416 tV~flGT~~G~l~Kvv~~~~--~-~~~~ee~~~~-~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 416 DVMFVSTDRGALHKAISLEH--A-VHIIEETQLF-QDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEEETTSEEEEEEECSS--S-EEEEEEEECC-TTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred EEEEEEcCCcEEEEEEecCC--C-ceEEEEeccc-CCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 36788888997643322111 1 1111222222 245688999999988 88999988776665
No 393
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=21.50 E-value=5.5e+02 Score=24.66 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=19.9
Q ss_pred eEEEEeeCCCeEEEEeCCCCCC
Q 013578 418 SVLATSSVDKKVKLWLAPSLES 439 (440)
Q Consensus 418 ~~l~t~~~Dg~i~vw~~~~~~~ 439 (440)
.+|+|-+.|.++|+|++.++++
T Consensus 232 ~fLftL~~Dh~LRiWsL~t~~l 253 (729)
T 3f7f_A 232 RYLIVLTQNCHLKIWDLTSFTL 253 (729)
T ss_dssp TEEEEEETTCEEEEEETTTTEE
T ss_pred cEEEEEEcCCeEEEEEcCCCce
Confidence 6999999999999999998763
No 394
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=20.83 E-value=1e+02 Score=16.00 Aligned_cols=23 Identities=30% Similarity=0.689 Sum_probs=12.0
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHh
Q 013578 1 MDPVLSITVVSVVLGALIAIIFFK 24 (440)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (440)
|.|.-. .+++++....+++..|-
T Consensus 1 M~~l~i-~ivalivalIiaIVVWt 23 (36)
T 1pi7_A 1 MQPIQI-AIVALVVAIIIAIVVWS 23 (36)
T ss_pred Cchhhh-HHHHHHHHHHHHHHHHH
Confidence 445423 55556555555555443
No 395
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=20.68 E-value=4.5e+02 Score=23.39 Aligned_cols=72 Identities=17% Similarity=0.286 Sum_probs=39.7
Q ss_pred CCCCeEEEEecCCCEEEEEeEecCCCc----------eeeeeeeeeeeccccceEEEEEcCCCCEEEEEeCCCcEEEEec
Q 013578 259 PNGRFLAAAAFTADVKVWEIVYSKDGL----------VKAVTSVMQLKGHKSAVTWLCFAPNSEQIITASKDGTLRVWNI 328 (440)
Q Consensus 259 ~~~~~l~~~~~dg~i~i~d~~~~~~~~----------~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iwd~ 328 (440)
......++-..+|.|+.|-......++ ......+..+ ....|..|+.. ..+.+.-..||.|..|-.
T Consensus 155 ~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l--~~~~i~~va~G--~~hs~alt~~G~v~~wG~ 230 (473)
T 3of7_A 155 ATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTF--SKYNIVQLAPG--KDHILFLDEEGMVFAWGN 230 (473)
T ss_dssp ECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCC--CSSCEEEEEEC--SSEEEEEETTSCEEEEEC
T ss_pred ccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEcccc--CCCCEEEEEec--CCeEEEEeCCCeEEEEeC
Confidence 334455666789999999853211110 0111111111 12347777763 446666678999999987
Q ss_pred Cccccc
Q 013578 329 NVRYHL 334 (440)
Q Consensus 329 ~~~~~~ 334 (440)
....++
T Consensus 231 n~~GqL 236 (473)
T 3of7_A 231 GQQNQL 236 (473)
T ss_dssp CTTSTT
T ss_pred CCCCCC
Confidence 654443
No 396
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=20.47 E-value=3.5e+02 Score=25.13 Aligned_cols=56 Identities=7% Similarity=-0.014 Sum_probs=36.4
Q ss_pred eEEEEeeCCceEEEEeCCC-C----c-eeeeee--CCCCcccEEEecCCCCeEEEEecCCCEEE
Q 013578 220 TIIASCSEGTDISIWHGKT-G----K-LLGNVD--TNQLKNNMAAISPNGRFLAAAAFTADVKV 275 (440)
Q Consensus 220 ~~l~s~~~d~~i~vwd~~~-~----~-~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 275 (440)
..++.|+.+|.|.-.-... + . .+..+. ....+|..+.++++...|++++.++.++|
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 4678889999876443322 2 1 122232 23567889999999999999987755443
Done!