Query 013583
Match_columns 440
No_of_seqs 205 out of 1571
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 05:19:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013583.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013583hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01793 cit_synth_euk citrat 100.0 2E-121 5E-126 942.8 42.2 426 7-432 2-427 (427)
2 cd06105 ScCit1-2_like Saccharo 100.0 2E-120 5E-125 936.5 44.2 426 9-434 1-426 (427)
3 PRK09569 type I citrate syntha 100.0 3E-118 7E-123 922.6 44.9 430 8-438 2-433 (437)
4 cd06106 ScCit3_like Saccharomy 100.0 3E-117 7E-122 913.2 43.0 424 9-432 1-428 (428)
5 cd06103 ScCS-like Saccharomyce 100.0 1E-115 3E-120 901.7 42.7 424 9-432 1-426 (426)
6 KOG2617 Citrate synthase [Ener 100.0 2E-106 5E-111 800.3 36.5 428 7-438 25-452 (458)
7 PLN02456 citrate synthase 100.0 3E-106 7E-111 837.9 34.0 405 6-436 31-448 (455)
8 cd06115 AthCS_per_like Arabido 100.0 4E-101 9E-106 791.3 36.4 385 24-436 10-408 (410)
9 cd06107 EcCS_AthCS-per_like Es 100.0 1.6E-99 4E-104 774.5 37.4 363 44-430 5-382 (382)
10 COG0372 GltA Citrate synthase 100.0 1.2E-99 3E-104 772.1 35.4 370 37-437 9-385 (390)
11 cd06116 CaCS_like Chloroflexus 100.0 9E-100 2E-104 776.9 33.8 365 44-436 5-381 (384)
12 cd06109 BsCS-I_like Bacillus s 100.0 2.8E-98 6E-103 758.5 38.2 346 46-430 1-349 (349)
13 TIGR01798 cit_synth_I citrate 100.0 1.6E-98 3E-103 772.6 34.3 375 24-434 20-410 (412)
14 PRK12351 methylcitrate synthas 100.0 3.2E-98 7E-103 763.4 36.0 357 45-436 9-372 (378)
15 cd06117 Ec2MCS_like_1 Subgroup 100.0 1.6E-97 3E-102 756.7 35.5 355 47-436 2-363 (366)
16 cd06108 Ec2MCS_like Escherichi 100.0 1.5E-97 3E-102 755.5 35.1 353 46-436 1-360 (363)
17 PRK14036 citrate synthase; Pro 100.0 2.1E-97 4E-102 758.4 35.5 361 44-436 4-370 (377)
18 PRK05614 gltA type II citrate 100.0 2.6E-97 6E-102 765.6 36.6 372 24-431 33-419 (419)
19 cd06112 citrate_synt_like_1_1 100.0 7.7E-97 2E-101 754.3 35.1 362 45-436 2-370 (373)
20 PRK14035 citrate synthase; Pro 100.0 1.1E-96 2E-101 751.0 35.6 357 44-436 3-365 (371)
21 PRK14032 citrate synthase; Pro 100.0 1.8E-96 4E-101 764.1 37.2 398 14-436 9-441 (447)
22 PRK14034 citrate synthase; Pro 100.0 1.2E-95 3E-100 743.6 34.9 357 44-436 3-365 (372)
23 PRK14037 citrate synthase; Pro 100.0 4.2E-95 9E-100 741.5 35.7 359 44-436 4-371 (377)
24 cd06114 EcCS_like Escherichia 100.0 9.8E-95 2.1E-99 743.8 36.2 359 44-430 27-400 (400)
25 cd06113 citrate_synt_like_1_2 100.0 2.5E-94 5.5E-99 742.0 39.1 368 50-430 10-406 (406)
26 cd06111 DsCS_like Cold-active 100.0 1.4E-92 3E-97 720.5 36.5 353 46-433 1-359 (362)
27 PRK12349 citrate synthase 3; P 100.0 3.6E-92 7.9E-97 719.0 37.1 354 44-432 5-365 (369)
28 PF00285 Citrate_synt: Citrate 100.0 2.1E-92 4.5E-97 720.1 30.9 348 47-424 1-356 (356)
29 cd06118 citrate_synt_like_1 Ci 100.0 1.7E-91 3.7E-96 713.4 37.2 352 46-428 1-358 (358)
30 PRK14033 citrate synthase; Pro 100.0 2.4E-91 5.2E-96 713.9 35.2 358 44-436 9-372 (375)
31 cd06110 BSuCS-II_like Bacillus 100.0 7.3E-91 1.6E-95 708.0 37.2 350 46-430 1-356 (356)
32 TIGR01800 cit_synth_II 2-methy 100.0 5.7E-91 1.2E-95 710.8 35.1 356 46-436 1-362 (368)
33 PRK12350 citrate synthase 2; P 100.0 8.2E-91 1.8E-95 702.1 33.0 338 46-433 3-349 (353)
34 cd06101 citrate_synt Citrate s 100.0 1.3E-74 2.9E-79 566.6 26.1 259 46-428 1-265 (265)
35 cd06102 citrate_synt_like_2 Ci 100.0 1E-66 2.2E-71 512.9 27.1 266 50-430 17-282 (282)
36 cd06099 CS_ACL-C_CCL Citrate s 100.0 8.3E-60 1.8E-64 448.7 21.3 208 210-428 1-213 (213)
37 PRK06224 citrate synthase; Pro 100.0 6.9E-59 1.5E-63 455.6 25.1 244 53-432 8-258 (263)
38 cd06100 CCL_ACL-C Citryl-CoA l 100.0 2.2E-51 4.8E-56 394.7 22.7 208 208-426 10-221 (227)
39 PLN02522 ATP citrate (pro-S)-l 100.0 2.4E-51 5.3E-56 437.3 24.3 234 49-424 348-599 (608)
40 KOG1254 ATP-citrate lyase [Ene 99.7 2.4E-18 5.3E-23 175.7 5.7 186 224-424 389-591 (600)
41 cd06100 CCL_ACL-C Citryl-CoA l 98.0 0.00095 2.1E-08 64.5 19.2 74 71-153 1-78 (227)
42 cd06099 CS_ACL-C_CCL Citrate s 80.7 6.5 0.00014 37.7 7.6 61 92-152 2-64 (213)
43 PRK14037 citrate synthase; Pro 70.2 15 0.00032 38.4 7.5 62 91-152 151-214 (377)
44 PRK14035 citrate synthase; Pro 63.6 19 0.00041 37.5 6.7 64 90-153 150-215 (371)
45 PRK14034 citrate synthase; Pro 63.1 20 0.00042 37.5 6.7 63 91-153 151-215 (372)
46 PRK12349 citrate synthase 3; P 60.6 29 0.00063 36.1 7.4 62 91-152 154-217 (369)
47 PRK14036 citrate synthase; Pro 60.4 25 0.00053 36.8 6.9 63 91-153 153-217 (377)
48 cd06112 citrate_synt_like_1_1 59.0 22 0.00047 37.1 6.2 61 91-153 152-216 (373)
49 KOG2617 Citrate synthase [Ener 54.1 6.5 0.00014 41.1 1.4 51 169-219 402-453 (458)
50 PRK12351 methylcitrate synthas 53.4 47 0.001 34.8 7.5 60 91-152 158-221 (378)
51 PRK14033 citrate synthase; Pro 52.0 49 0.0011 34.6 7.4 60 91-152 158-221 (375)
52 cd06111 DsCS_like Cold-active 51.1 50 0.0011 34.3 7.3 61 91-153 148-212 (362)
53 cd06108 Ec2MCS_like Escherichi 48.2 56 0.0012 34.0 7.1 60 91-152 146-209 (363)
54 cd06117 Ec2MCS_like_1 Subgroup 46.4 69 0.0015 33.4 7.5 60 91-152 149-212 (366)
55 cd06113 citrate_synt_like_1_2 44.8 66 0.0014 34.0 7.1 60 91-152 175-240 (406)
56 PTZ00096 40S ribosomal protein 43.9 17 0.00037 32.8 2.2 22 67-98 15-36 (143)
57 cd06110 BSuCS-II_like Bacillus 42.2 80 0.0017 32.7 7.2 60 91-152 148-211 (356)
58 PRK14032 citrate synthase; Pro 41.2 86 0.0019 33.6 7.4 60 91-152 205-270 (447)
59 TIGR01800 cit_synth_II 2-methy 40.5 93 0.002 32.4 7.4 61 90-152 147-211 (368)
60 cd06109 BsCS-I_like Bacillus s 40.3 87 0.0019 32.4 7.1 60 91-152 137-200 (349)
61 cd06118 citrate_synt_like_1 Ci 39.5 95 0.0021 32.1 7.2 60 91-152 148-211 (358)
62 PRK04038 rps19p 30S ribosomal 39.2 23 0.0005 31.6 2.3 22 67-98 7-28 (134)
63 TIGR01025 rpsS_arch ribosomal 34.3 30 0.00064 31.0 2.2 14 67-80 5-18 (135)
64 PF00285 Citrate_synt: Citrate 32.1 1.7E+02 0.0036 30.2 7.7 61 91-153 148-214 (356)
65 cd06101 citrate_synt Citrate s 31.7 2E+02 0.0043 28.5 7.8 78 72-152 37-116 (265)
66 PF07583 PSCyt2: Protein of un 29.2 47 0.001 31.8 2.8 25 92-116 27-51 (208)
67 PRK13755 putative mercury tran 28.0 48 0.001 29.3 2.3 24 394-417 56-79 (139)
68 PRK13890 conjugal transfer pro 26.5 2.9E+02 0.0063 23.8 7.1 42 68-117 15-57 (120)
69 PF09702 Cas_Csa5: CRISPR-asso 24.1 74 0.0016 27.2 2.7 19 101-119 69-87 (105)
70 PF08427 DUF1741: Domain of un 21.1 2.4E+02 0.0053 27.6 6.1 54 72-135 84-139 (237)
71 PRK08558 adenine phosphoribosy 20.8 2E+02 0.0043 28.0 5.4 56 72-135 24-80 (238)
72 PF11591 2Fe-2S_Ferredox: Ferr 20.5 42 0.0009 22.2 0.4 11 246-256 7-17 (34)
73 PLN00179 acyl- [acyl-carrier p 20.2 1E+03 0.022 25.1 12.6 82 249-342 231-314 (390)
74 COG0372 GltA Citrate synthase 20.0 3.2E+02 0.0069 28.8 7.0 62 91-152 163-227 (390)
No 1
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic. This model includes both mitochondrial and peroxisomal forms of citrate synthase. Citrate synthase is the entry point to the TCA cycle from acetyl-CoA. Peroxisomal forms, such as SP:P08679 from yeast (recognized by the C-terminal targeting motif SKL) act in the glyoxylate cycle. Eukaryotic homologs excluded by the high trusted cutoff of this model include a Tetrahymena thermophila citrate synthase that doubles as a filament protein, a putative citrate synthase from Plasmodium falciparum (no TCA cycle), and a methylcitrate synthase from Aspergillus nidulans.
Probab=100.00 E-value=2.2e-121 Score=942.84 Aligned_cols=426 Identities=79% Similarity=1.302 Sum_probs=406.2
Q ss_pred hhHHHHHHHHCHHHHHHHHHHHHhhCCccccceehhhhccccccccccccccceecCCCCeeecCCCHHHHhhhCCCCCC
Q 013583 7 LDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKP 86 (440)
Q Consensus 7 ~~l~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~t~~~~~~Gl~g~~~~~t~is~iD~~~Gi~YRGy~I~eL~~~~~~~~~ 86 (440)
.+||++++++||.++++|++||++||++++|++|++|+++||||+++++|+||+|||++||+||||+|+||++.+++..+
T Consensus 2 ~~lk~~~~~~i~~~~~~~~~l~~~~g~~~~~~~t~~~~~~Glrgv~~~~t~iS~iD~~~Gl~yRGy~I~dl~~~~~~~~~ 81 (427)
T TIGR01793 2 LDLKEQLKEKIPEQQEKVKKLRAEHGKVVLGNITVDMVYGGMRGMKGLVWETSVLDPEEGIRFRGLSIPECQKLLPKAKG 81 (427)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeeHhhccCccCCCcccceeceEEcCCCCeEECCeeHHHHHHHhccCCc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999876665557
Q ss_pred CCCCcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccC
Q 013583 87 DGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIH 166 (440)
Q Consensus 87 ~~~~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~ 166 (440)
++++.||||+||||||+|||++|+++|+++|..++.+|++|.++|++||+++|||++|+++|++|++++.|.++|+.+.+
T Consensus 82 ~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vsaL~~~~~f~~~y~~~~~ 161 (427)
T TIGR01793 82 GEEPLPEGLLWLLLTGKVPSEEQVDALSAEWRARADLPEHVYKTIDALPVTLHPMAQFATAVMALQVESEFAKAYAKGIH 161 (427)
T ss_pred cccCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhcccccchhhhcccCcc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999988988877
Q ss_pred CCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCCHHHHHHhhhcCCchHHHHHHHHHHHHhcCCCCCCCc
Q 013583 167 KSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVS 246 (440)
Q Consensus 167 ~~~~~~~~~~~a~~liA~~p~i~a~~y~~~~~~~~~~~p~~~l~~~~n~l~ml~~~~~~~~~~l~~~Lvl~ADHeg~n~S 246 (440)
+.++|++.++++++|||++|+|+|++||+.+++|..++||+++||++||++||+++++.+.++||++|||||||||+|+|
T Consensus 162 ~~~~~~~~~e~~~~LiAk~P~i~A~~yr~~~~~g~~i~p~~~l~~a~Nfl~Ml~~~~~~~~~~l~~~LiLhADHeg~NaS 241 (427)
T TIGR01793 162 KTKYWEYTYEDSMDLIAKLPTVAAYIYRNMYKDGQSISIDDSKDYSANFAHMLGYDSPSFQELMRLYLTIHSDHEGGNVS 241 (427)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCccHHHHHHHHhcCCCHHHHHHHHHHHhhhcccccccch
Confidence 77889999999999999999999999998766666689999999999999999889999999999999999999989999
Q ss_pred hhHHHHHhhcCcChHHHHHHHHhhhcccccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCC
Q 013583 247 AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLR 326 (440)
Q Consensus 247 t~aaRv~aSt~ad~y~avaAgl~al~GplHGGA~~~~~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~~~~ipGfGH~vy~ 326 (440)
|||+||||||++|+|+|++|||++|+||+||||||+|++||.++.+.+|.+.+++++++||++.+++|++||||||||||
T Consensus 242 TfaarvvaSt~ad~y~~v~Agi~aL~GPlHGgAn~~vl~~l~ei~~~ig~~~s~~~v~~~i~~~l~~g~~i~GfGH~vyr 321 (427)
T TIGR01793 242 AHTGHLVGSALSDPYLSFAAALNGLAGPLHGLANQEVLLWLKSVVSECGENVTKEQLKDYIWKTLNSGKVVPGYGHAVLR 321 (427)
T ss_pred hHHHHHhhccCCCHHHHHHHHHhhccCCccCCcHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCcccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999877776678899999999999999999999999999
Q ss_pred CCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhhh
Q 013583 327 KTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLG 406 (440)
Q Consensus 327 ~~DPRa~~L~~~a~~~~~~~~~~~~a~~le~~~~~~~~~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~G 406 (440)
.+|||+.+|++++.+..+++++++++.++++++++++.++++.+++|||||||+|+++++||||+.++||++|++||++|
T Consensus 322 ~~DPRa~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~pNVD~~sg~l~~~lGip~~~~~t~lFavsR~~G 401 (427)
T TIGR01793 322 KTDPRYICQREFALKHLPDDPLFKLVSNLYKIVPGILTELGKVKNPWPNVDAHSGVLLQYYGLTEARYYTVLFGVSRALG 401 (427)
T ss_pred CCCCCcHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHcCCCchhhhhhHhhhhccch
Confidence 99999999999999988889999999999999999888888899999999999999999999985589999999999999
Q ss_pred HHHhHHHHHHcCCCccCCCccchhHH
Q 013583 407 ICSQLIWDRALGLPLERPKSVTLDWI 432 (440)
Q Consensus 407 w~AH~~Eq~~~~~~i~RP~~~~~~~~ 432 (440)
|+||++||++.+.||+||+|+|++++
T Consensus 402 w~AH~ieq~~~~~~I~RP~s~~~~~~ 427 (427)
T TIGR01793 402 ILSQLIWDRALGLPLERPKSVSTEWL 427 (427)
T ss_pred HHHHHHHHHHcCCCccCCcccccccC
Confidence 99999999999889999999999864
No 2
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like. Citrate synthases (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-neg
Probab=100.00 E-value=2.1e-120 Score=936.53 Aligned_cols=426 Identities=68% Similarity=1.178 Sum_probs=405.7
Q ss_pred HHHHHHHHCHHHHHHHHHHHHhhCCccccceehhhhccccccccccccccceecCCCCeeecCCCHHHHhhhCCCCCCCC
Q 013583 9 LHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDG 88 (440)
Q Consensus 9 l~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~t~~~~~~Gl~g~~~~~t~is~iD~~~Gi~YRGy~I~eL~~~~~~~~~~~ 88 (440)
|||+++++||.|++++++|+++||++++|++|+|++++|||||++++|+||+|||++||+||||+|+||+++++++.+++
T Consensus 1 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~d~~~~Gl~g~~~~~t~iS~iDg~~Gl~YRGy~I~dLa~~~~~~~~~~ 80 (427)
T cd06105 1 LKDRLAELIPKEQARIKKFRKEHGKTVVGEVTVDMVYGGMRGIKGLVWETSVLDPEEGIRFRGLSIPECQKLLPKAPGGE 80 (427)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCcceeeeecCcccCCCCCceecceeceeEcCCCCeEECCccHHHHHhhCccccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999998766778
Q ss_pred CCcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCC
Q 013583 89 EPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKS 168 (440)
Q Consensus 89 ~~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~ 168 (440)
+++||||+||||+|+|||++|+++|+++|.+++.+|+.|.++|++||+++|||++|+++|++|+++|.|+..|+++.++.
T Consensus 81 ~~~fEev~yLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vsaL~~~d~f~~~~~~~~~~~ 160 (427)
T cd06105 81 EPLPEGLFWLLLTGEVPTKEQVSALSKEWAARAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESKFAKAYAEGIHKS 160 (427)
T ss_pred ccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhcccchhhhcccccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999988877787777777
Q ss_pred CCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCCHHHHHHhhhcCCchHHHHHHHHHHHHhcCCCCCCCchh
Q 013583 169 KYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAH 248 (440)
Q Consensus 169 ~~~~~~~~~a~~liA~~p~i~a~~y~~~~~~~~~~~p~~~l~~~~n~l~ml~~~~~~~~~~l~~~Lvl~ADHeg~n~St~ 248 (440)
++|+..++++++|||++|+|+|++||+++.+.++++||+++||++||++||++.++...++||++|||||||||+|+|||
T Consensus 161 ~~~~~~~~~~~~LiAk~p~i~A~~yr~~~~g~~~~~pd~~ls~a~Nfl~Ml~~~~~~~~~~l~~~lvLhADHeg~NaSTf 240 (427)
T cd06105 161 KYWEYVYEDSMDLIAKLPCVAAKIYRNLYRGGKIIAIDSNLDWSANFANMLGYTDPQFTELMRLYLTIHSDHEGGNVSAH 240 (427)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCcCHHHHHHHHhcCCCHHHHHHHHHHHhhhccccCccchHH
Confidence 88999999999999999999999999865445689999999999999999998678899999999999999998899999
Q ss_pred HHHHHhhcCcChHHHHHHHHhhhcccccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCC
Q 013583 249 TGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKT 328 (440)
Q Consensus 249 aaRv~aSt~ad~y~avaAgl~al~GplHGGA~~~~~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~~~~ipGfGH~vy~~~ 328 (440)
|+||||||++|+|+|++||+++|+||+|||||++|++||.++.+++|.+++++++++||++.+++|++||||||||||..
T Consensus 241 aarvvaSt~ad~ysav~agi~aL~GplHGGA~e~v~~~l~ei~~~~g~~~~~~~v~~~i~~~l~~g~~i~GFGHrvyk~~ 320 (427)
T cd06105 241 TTHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTKLQKEVGKDVSDEQLREYVWKTLNSGRVVPGYGHAVLRKT 320 (427)
T ss_pred HHHHHhccCCCHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCcccCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999987777666788999999999999999999999999999
Q ss_pred CccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhhhHH
Q 013583 329 DPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGIC 408 (440)
Q Consensus 329 DPRa~~L~~~a~~~~~~~~~~~~a~~le~~~~~~~~~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~Gw~ 408 (440)
|||+++|++++.+..++++++++++++++++.+++.++++.+++|||||||+|++++.||||+.++||++|++||++||+
T Consensus 321 DPRa~~lk~~~~~~~~~~~~~~~~~~ie~~a~~~l~~~~~~~~l~pNVDfysg~l~~~lGip~~~~ft~lFa~sR~~GW~ 400 (427)
T cd06105 321 DPRYTCQREFALKHLPNDPLFKLVSQLYKIVPPVLTEQGKAKNPWPNVDAHSGVLLQYYGLTEMNYYTVLFGVSRALGVL 400 (427)
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHcCCCchhhhHHHHHHHHHHHHH
Confidence 99999999999998888999999999999999888888889999999999999999999999558999999999999999
Q ss_pred HhHHHHHHcCCCccCCCccchhHHHH
Q 013583 409 SQLIWDRALGLPLERPKSVTLDWIEK 434 (440)
Q Consensus 409 AH~~Eq~~~~~~i~RP~~~~~~~~~~ 434 (440)
||++||++.+.||+||+|+|++++++
T Consensus 401 AH~~Eq~~~~~~I~RP~s~~~~~~~~ 426 (427)
T cd06105 401 SQLIWDRALGLPLERPKSVSTDGLEK 426 (427)
T ss_pred HHHHHHHhCCCCccCCcchhHHHHhh
Confidence 99999999888999999999999976
No 3
>PRK09569 type I citrate synthase; Reviewed
Probab=100.00 E-value=3.3e-118 Score=922.58 Aligned_cols=430 Identities=52% Similarity=0.914 Sum_probs=404.7
Q ss_pred hHHHHHHHHCHHHHHHHHHHHHhhCCccccceehhhhccccccccccccccceecCCCCeeecCCCHHHHhhhCCCCCCC
Q 013583 8 DLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPD 87 (440)
Q Consensus 8 ~l~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~t~~~~~~Gl~g~~~~~t~is~iD~~~Gi~YRGy~I~eL~~~~~~~~~~ 87 (440)
.||++++++||+||++|++|+++||++++|++|+||+.+||||+++++|+||+|||++||+||||+|+||++++|+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~GL~gv~~~~t~IS~iDg~~Gl~YRGy~I~dL~~~~p~~~~~ 81 (437)
T PRK09569 2 QLKETLKQKIEEHRPRTTRLVKEFGSVVIDEVTIEQCIGGARDIRSLVTDISYLDPQEGIRFRGKTIPETFEALPKAPGS 81 (437)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCeeeeeeeHhhhcccccCCeecceeceeecCCCceeECCccHHHHHhhCcccccc
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999887777
Q ss_pred CCCcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhc-cC
Q 013583 88 GEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKG-IH 166 (440)
Q Consensus 88 ~~~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~L~~~vs~L~~~~~~~~~~~~~-~~ 166 (440)
.+++||||+||||||+|||++|+++|+++|..++.+|+.|.++|++||+++|||++|+++|++|+++|.|...|+++ ..
T Consensus 82 ~~~~fEev~~LLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~s~~~~~y~~~~~~ 161 (437)
T PRK09569 82 EYPTVESFWYFLLTGEVPTQEQVQEVVAEWKKRQNVPQYVIDAIRALPRDSHPMVMLSVGILAMQRESKFAKFYNEGKFN 161 (437)
T ss_pred CCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhccccchhhhhccccccc
Confidence 77799999999999999999999999999999999999999999999999999999999999999998898778665 45
Q ss_pred CCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCCHHHHHHhhhcCCchHHHHHHHHHHHHhcCCCCCCCc
Q 013583 167 KSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVS 246 (440)
Q Consensus 167 ~~~~~~~~~~~a~~liA~~p~i~a~~y~~~~~~~~~~~p~~~l~~~~n~l~ml~~~~~~~~~~l~~~Lvl~ADHeg~n~S 246 (440)
+.++|+..++++++|||++|+|+|++||++++++++++|++++||++||++||+++ +...++||++||||||||++|+|
T Consensus 162 ~~~~~~~~~~~~~rliA~~p~i~A~~yr~~~~g~~~~~p~~~ls~a~NFl~Ml~~~-~~~~~~l~~~LiL~ADHe~~naS 240 (437)
T PRK09569 162 KMDAWEYMYEDASDLVARIPVIAAYIYNLKYKGDKQIPSDPELDYGANFAHMIGQP-KPYKDVARMYFILHSDHESGNVS 240 (437)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHhcCC-chHHHHHHHHHhhhhccCCCcch
Confidence 56788999999999999999999999999875567899999999999999999885 45679999999999999878999
Q ss_pred hhHHHHHhhcCcChHHHHHHHHhhhcccccccchHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhCCCcccccCCCCC
Q 013583 247 AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECG-ENVTTEQLKDYVWKTLNSGKVVPGFGHGVL 325 (440)
Q Consensus 247 t~aaRv~aSt~ad~y~avaAgl~al~GplHGGA~~~~~~~l~~i~~~ig-~~~~~~~~~~~v~~~l~~~~~ipGfGH~vy 325 (440)
|||+|+++||++|+|+||+|||++|+||+|||||++|++||.++.+.++ ..++++++++||++.+++|++|||||||||
T Consensus 241 TfaaRvvaSt~ad~ysav~Agi~aL~GplHGGA~e~v~~~l~~i~~~~~~~~~~~~~~~~~v~~~l~~~~ri~GFGHrvy 320 (437)
T PRK09569 241 AHTTHLVASALSDAYYSYSAGLNGLAGPLHGLANQEVLGWIQQFQEKLGGEEPTKEQVEQALWDTLNAGQVIPGYGHAVL 320 (437)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCcccCCCCCCC
Confidence 9999999999999999999999999999999999999999999987664 334678999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhh
Q 013583 326 RKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSL 405 (440)
Q Consensus 326 ~~~DPRa~~L~~~a~~~~~~~~~~~~a~~le~~~~~~~~~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~ 405 (440)
|..|||+++|+++++++.++++++++++++++++.+++.++++.++++||||||+|++++.||||+.++||++|++||++
T Consensus 321 k~~DPRa~~L~~~a~~~~~~~~~~~ia~~~e~v~~~~~~~~~~~~~l~pNVD~~sg~l~~~lGip~~~~~t~lFaisR~~ 400 (437)
T PRK09569 321 RKTDPRYTAQREFCLKHLPDDPLFKLVAMIFEVAPGVLTEHGKTKNPWPNVDAQSGVIQWYYGVKEWDFYTVLFGVGRAL 400 (437)
T ss_pred CCCCCchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCChHHHHHHHHHHcCCCchhhhHHHHHHHHHH
Confidence 99999999999999999888999999999999998888888888999999999999999999999449999999999999
Q ss_pred hHHHhHHHHHHcCCCccCCCccchhHHHHHhhh
Q 013583 406 GICSQLIWDRALGLPLERPKSVTLDWIEKNCKK 438 (440)
Q Consensus 406 Gw~AH~~Eq~~~~~~i~RP~~~~~~~~~~~~~~ 438 (440)
||+||++||+..+.||+||+++|+|++++.|++
T Consensus 401 Gw~AH~iEq~~~~~~i~RP~~~Y~G~~~~~~~~ 433 (437)
T PRK09569 401 GVMANITWDRGLGYAIERPKSVTTEMLEKWAAE 433 (437)
T ss_pred HHHHHHHHHHhCCCCccCCccccchHHHHHHhh
Confidence 999999999987778999999999999999964
No 4
>cd06106 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like. 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxaloacetate (OAA) to form 2-methylcitrate and CoA. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with OAA to form citrate and CoA, the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the a
Probab=100.00 E-value=3.1e-117 Score=913.18 Aligned_cols=424 Identities=58% Similarity=1.017 Sum_probs=392.6
Q ss_pred HHHHHHHHCHHHHHHHHHHHHhhCCccccceehhhhccccccccccccccceecCCCCeeecCCCHHHHhhhCCCCCCCC
Q 013583 9 LHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDG 88 (440)
Q Consensus 9 l~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~t~~~~~~Gl~g~~~~~t~is~iD~~~Gi~YRGy~I~eL~~~~~~~~~~~ 88 (440)
||++++++||++|++|++|+++||++++|++|++++.+|||||++++|+||+||+++|++||||+|+||++++|+..++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~t~~~~~~GL~gv~~~~t~is~idg~~Gl~YRGy~I~dLa~~~~~~~~~~ 80 (428)
T cd06106 1 LKEALKEVIPAKREQLKKLKAEYGETVVGDVKVSNVLGGMRGLKSMLWEGSVLDAEEGIRFHGKTIPECQKELPKAPIGG 80 (428)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCCeeeeeeHHHhcccccCCeeeeecCeEECCCCCeeECCCcHHHHHhhCccccccC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999987653223
Q ss_pred CCcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCC
Q 013583 89 EPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKS 168 (440)
Q Consensus 89 ~~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~ 168 (440)
...||||+||||+|+|||++|+++|+++|.+++.||+.+.++|++||+++|||++|+++|++|+.++.|...|+.+..+.
T Consensus 81 ~f~~Eev~yLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~L~~~~~~~~~y~~~~~~~ 160 (428)
T cd06106 81 EMLPESMLWLLLTGKVPTFEQARGLSKELAERGKLPHYIEKLLDSLPKTLHPMTQLSIGVAALNHDSKFAAAYEKGIKKT 160 (428)
T ss_pred CccHHHHHHHHHcCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhccccchhhhhcccCcccc
Confidence 23449999999999999999999999999999999999999999999999999999999999998877766676665555
Q ss_pred CCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCc-ccCCCCCCCHHHHHHhhhcC-CchHHHHHHHHHHHHhcCCCCCCCc
Q 013583 169 KYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGK-IIPKDDSLDYGGNFSHMLGF-DDPKMLELMRLYVTIHSDHEGGNVS 246 (440)
Q Consensus 169 ~~~~~~~~~a~~liA~~p~i~a~~y~~~~~~~~-~~~p~~~l~~~~n~l~ml~~-~~~~~~~~l~~~Lvl~ADHeg~n~S 246 (440)
++|+..++++++|+|++|+|+|++||+++|++. +++|++++||++||++||+. |++...++||++|||||||||+|+|
T Consensus 161 ~~~~~~~~~~~rLiAk~ptI~A~~yr~~~g~~~~~~~p~~~ls~a~NFL~Mlg~~p~~~~~~~l~~~LiL~ADHeg~NaS 240 (428)
T cd06106 161 EYWEPTLEDSLNLIARLPALAARIYRNVYGEGHGLGKIDPEVDWSYNFTSMLGYGDNLDFVDLLRLYIALHGDHEGGNVS 240 (428)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHhhhcccCCccch
Confidence 678999999999999999999999999886554 55699999999999999964 7888999999999999999988999
Q ss_pred hhHHHHHhhcCcChHHHHHHHHhhhcccccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCC
Q 013583 247 AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLR 326 (440)
Q Consensus 247 t~aaRv~aSt~ad~y~avaAgl~al~GplHGGA~~~~~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~~~~ipGfGH~vy~ 326 (440)
|||+||+|||++|+|+|++|||++|+||+|||||++|++||.++.+++|...+++++++||++.+++|++||||||||||
T Consensus 241 TfaarvvaST~ad~ysav~agi~aL~GPlHGGAne~v~~~l~e~~~~ig~~~~~~~~~~~i~~~l~~g~~i~GfGHrvYk 320 (428)
T cd06106 241 AHTTHLVGSALSDPYLSYSAGLMGLAGPLHGLAAQEVLRWILEMQKNIGSKATDQDIRDYLWKTLKSGRVVPGYGHAVLR 320 (428)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHhcCCCcccChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999888886546789999999999999999999999999
Q ss_pred CCCccHHHHHHHHHhhC--CCChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhh
Q 013583 327 KTDPRYTCQREFALKHL--PDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRS 404 (440)
Q Consensus 327 ~~DPRa~~L~~~a~~~~--~~~~~~~~a~~le~~~~~~~~~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~ 404 (440)
..|||+++|+++++++. ..++++++++++++++.+++.++++.++++||||||+|++++.||||+.++||++|++||+
T Consensus 321 ~~DPRa~~l~~~~~~l~~~~~~~~~~~a~~ie~~~~~~l~~~~~~~~l~pNVDfysg~v~~~lGip~~~~ft~lFaisR~ 400 (428)
T cd06106 321 KPDPRFTALMEFAQTRPELENDPVVQLVQKLSEIAPGVLTEHGKTKNPFPNVDAASGVLFYHYGIREFLYYTVIFGVSRA 400 (428)
T ss_pred CCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhccccCCCCCchhHHHHHHHHcCCChhhcchHHHHHHHH
Confidence 99999999999998874 3579999999999999887778888899999999999999999999964689999999999
Q ss_pred hhHHHhHHHHHHcCCCccCCCccchhHH
Q 013583 405 LGICSQLIWDRALGLPLERPKSVTLDWI 432 (440)
Q Consensus 405 ~Gw~AH~~Eq~~~~~~i~RP~~~~~~~~ 432 (440)
+||+||++||++.+.||+||+|+|++++
T Consensus 401 ~GW~AHi~eq~~~~~~I~RP~s~~~~~~ 428 (428)
T cd06106 401 LGPLTQLVWDRILGLPIERPKSLSLEGL 428 (428)
T ss_pred HHHHHHHHHHHhCCCCCcCCCccccccC
Confidence 9999999999988889999999999874
No 5
>cd06103 ScCS-like Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homo
Probab=100.00 E-value=1.3e-115 Score=901.69 Aligned_cols=424 Identities=64% Similarity=1.136 Sum_probs=396.8
Q ss_pred HHHHHHHHCHHHHHHHHHHHHhhCCccccceehhhhccccccccccccccceecCCCCeeecCCCHHHHhhhCCCCCCCC
Q 013583 9 LHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDG 88 (440)
Q Consensus 9 l~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~t~~~~~~Gl~g~~~~~t~is~iD~~~Gi~YRGy~I~eL~~~~~~~~~~~ 88 (440)
|||+++++||.|+++|+.|+++||+++++++|++++.+||+|+++++|+||+|||++|++||||+|+||++++++++++.
T Consensus 1 l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~gv~~~~t~Is~iDg~~Gl~YRGy~I~dLa~~~~~~~~~~ 80 (426)
T cd06103 1 LKDKLAELIPKKQARIKELRKKYGNTKLGQITVDQVIGGMRGMKGLVYETSVLDPDEGIRFRGKTIPECQELLPKADGGG 80 (426)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCccccccchhhhccCcCCCeeeeeeCeeEcCCCCeEECCccHHHHHhhCccccccC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999988765444
Q ss_pred CCcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhc-cCC
Q 013583 89 EPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKG-IHK 167 (440)
Q Consensus 89 ~~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~L~~~vs~L~~~~~~~~~~~~~-~~~ 167 (440)
+++||||+||||+|+|||++|+++|+++|.+++.+|+.+.+++++||+++|||++|+++|++|++++.|+..|+++ .++
T Consensus 81 ~~~fEev~yLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~ 160 (426)
T cd06103 81 EPLPEGLFWLLLTGEVPTEEQVDELSKEWAKRAEVPSHVVKMIDNLPRNLHPMTQLSAAILALQSESKFAKAYAEGKINK 160 (426)
T ss_pred cCcHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCChHHHHHHHHHhccccccchhhcccccccc
Confidence 5569999999999999999999999999999999999999999999999999999999999999988776667654 555
Q ss_pred CCCCCchHHHHHHHHHhhHHHHHHHHHHHh-cCCcccCCCCCCCHHHHHHhhhcCCchHHHHHHHHHHHHhcCCCCCCCc
Q 013583 168 SKYWEPTYEDSLNLIARVPVVAAYVYQRIY-KDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVS 246 (440)
Q Consensus 168 ~~~~~~~~~~a~~liA~~p~i~a~~y~~~~-~~~~~~~p~~~l~~~~n~l~ml~~~~~~~~~~l~~~Lvl~ADHeg~n~S 246 (440)
+++|+..++++++|+|++|+|+|++||+++ .++++++|++++||++||++||++.++..+++||++|||||||||+|+|
T Consensus 161 ~~~~~~~~~~a~~liA~~p~I~A~~yr~~~~~g~~~~~p~~~ls~aeNfl~ml~~~~~~~~~~l~~~LiL~ADHe~~NaS 240 (426)
T cd06103 161 TTYWEYVYEDAMDLIAKLPVVAAKIYRRKYRKGGEIGAIDSKLDWSANFAHMLGYEDEEFTDLMRLYLTLHSDHEGGNVS 240 (426)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCcCHHHHHHHHhCCCCHHHHHHHHHHHhhhhccCCccch
Confidence 667889999999999999999999999875 4456889999999999999999876688889999999999999978999
Q ss_pred hhHHHHHhhcCcChHHHHHHHHhhhcccccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCC
Q 013583 247 AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLR 326 (440)
Q Consensus 247 t~aaRv~aSt~ad~y~avaAgl~al~GplHGGA~~~~~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~~~~ipGfGH~vy~ 326 (440)
|||+|++|||++|+|+||+|||++|+||+|||||++|++||.++.+++|...+++++++||++.+++|++||||||||||
T Consensus 241 TfaaRvvaSt~ad~ysav~agi~aL~GplHGGA~e~v~~~l~ei~~~ig~~~~~~~~~~~v~~~l~~~~~i~GfGHrvYk 320 (426)
T cd06103 241 AHTSHLVGSALSDPYLSFSAALNGLAGPLHGLANQEVLKWLLKMQKELGKDVSDEELEKYIWDTLNSGRVVPGYGHAVLR 320 (426)
T ss_pred HHHHHHHhccCCCHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCcccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999877776556899999999999999999999999999
Q ss_pred CCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhhh
Q 013583 327 KTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLG 406 (440)
Q Consensus 327 ~~DPRa~~L~~~a~~~~~~~~~~~~a~~le~~~~~~~~~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~G 406 (440)
..|||+++|+++++++...++++++++++++++.+++.++++.|+++||||||+|++++.||||+.++||++|++||++|
T Consensus 321 ~~DPRa~~L~~~~~~~~~~~~~~~~a~~ie~~~~~~~~~~~~~k~l~pNVDfysa~v~~~lGip~~~~ft~lFa~sR~~G 400 (426)
T cd06103 321 KTDPRFTCQREFALKHLPDDPLFKLVAQCYKIIPGVLKEHGKVKNPYPNVDAHSGVLLQHYGMTEPQYYTVLFGVSRALG 400 (426)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcccCCCCCChHhHHHHHHHHcCCChhhhhhHHHhHhhcch
Confidence 99999999999999987788999999999999988777788889999999999999999999995489999999999999
Q ss_pred HHHhHHHHHHcCCCccCCCccchhHH
Q 013583 407 ICSQLIWDRALGLPLERPKSVTLDWI 432 (440)
Q Consensus 407 w~AH~~Eq~~~~~~i~RP~~~~~~~~ 432 (440)
|+||++||++.|.+|+||+|+|++.|
T Consensus 401 w~AH~~Eq~~~~~~i~RP~s~~~~~~ 426 (426)
T cd06103 401 VLAQLVWSRALGLPIERPKSMSTEGL 426 (426)
T ss_pred HHHHHHHHHhCCCCCCCCCccccccC
Confidence 99999999999989999999998754
No 6
>KOG2617 consensus Citrate synthase [Energy production and conversion]
Probab=100.00 E-value=2.3e-106 Score=800.31 Aligned_cols=428 Identities=61% Similarity=1.047 Sum_probs=416.3
Q ss_pred hhHHHHHHHHCHHHHHHHHHHHHhhCCccccceehhhhccccccccccccccceecCCCCeeecCCCHHHHhhhCCCCCC
Q 013583 7 LDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKP 86 (440)
Q Consensus 7 ~~l~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~t~~~~~~Gl~g~~~~~t~is~iD~~~Gi~YRGy~I~eL~~~~~~~~~ 86 (440)
..||+.+++.||++++++|+++++|| ++|+||++++++||||+..+.|+.|++|+++||+|||++|.||...+|+.+.
T Consensus 25 ~~LK~~l~~~ip~~~~~~k~~~~ehG--~vg~v~i~~i~gGmrg~~~~~~e~s~Ld~~~gI~frg~~i~e~q~~lp~~~~ 102 (458)
T KOG2617|consen 25 ATLKGNLAIVIPRTGDEYKKFVSEHG--TVGNVTLKKIYGGMRGKGLLLWETSVLDPEEGIRFRGGDIPECQKRLPPAEE 102 (458)
T ss_pred ccHHHHHHhhChhhHHHhhhhHhhcC--cccceeHHHhhcccCCCCceeecCcccchhhCeeecCCCHHHHHhhCCCCcc
Confidence 34999999999999999999999999 7999999999999999999999999999999999999999999999999888
Q ss_pred CCCCcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccC
Q 013583 87 DGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIH 166 (440)
Q Consensus 87 ~~~~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~ 166 (440)
+.+++||+++|||+||++||++|+++|+.+|.+|+.+|++|.++|+++|++.|||.++.+++++|...++|+++|..|+.
T Consensus 103 ~~e~lpe~~~wLL~tG~vPt~~Q~~~~~~~~a~rs~vP~~v~~~idsmP~d~HPM~q~~~a~~al~~~s~fa~ay~~G~~ 182 (458)
T KOG2617|consen 103 GAEPLPEELFWLLLTGNVPTQSQVAALSFELAQRSAVPQGVLDMIDSMPKDLHPMAQLAAAVLALKIFSPFAKAYLRGIG 182 (458)
T ss_pred CCcCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccHHHHHHHHhCCcccchHHHHHHHHHhccccccchhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCCHHHHHHhhhcCCchHHHHHHHHHHHHhcCCCCCCCc
Q 013583 167 KSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVS 246 (440)
Q Consensus 167 ~~~~~~~~~~~a~~liA~~p~i~a~~y~~~~~~~~~~~p~~~l~~~~n~l~ml~~~~~~~~~~l~~~Lvl~ADHeg~n~S 246 (440)
+.+||++++||+++|||+.|+|+|++|++.+++|.+. |++++||++||++|++..++.++++||.++++||||||.|+|
T Consensus 183 k~~yw~~~~ed~l~Liak~p~iAa~iY~~~~~dg~~~-~~~~~dys~Nf~~mlg~~~~~f~~lmrly~~iHadHE~gnVs 261 (458)
T KOG2617|consen 183 KYKYWQYTYEDCLVLIAKLPTIAAAIYRNIYADGIPK-PDPNLDYSANFARMLGSRQPDFAQLMRLYVGIHADHEGGNVS 261 (458)
T ss_pred hhhcccccHHHHHHHHHhccHHHHHHHHHHhcCCCCC-CCcccchhHhHHHHHccCChHHHHHHHHeeeeecccccCcHH
Confidence 9999999999999999999999999999999988544 499999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhcCcChHHHHHHHHhhhcccccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCC
Q 013583 247 AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLR 326 (440)
Q Consensus 247 t~aaRv~aSt~ad~y~avaAgl~al~GplHGGA~~~~~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~~~~ipGfGH~vy~ 326 (440)
+++.++++|++ |||.+++||+++|.||+||+|||++++||..+.++||++.+.+++++|++.+++.|++||||||+||+
T Consensus 262 Ah~~HLvGSal-dpyls~aa~~~GLaGPLHGlAnqEvl~~L~~~~~Eig~~~s~e~ikeyiw~~ln~~rvvpGyGHavlr 340 (458)
T KOG2617|consen 262 AHTGHLVGSAL-DPYLSFAAGMNGLAGPLHGLANQEVLRFLGKLIEEIGKDLSKENIKEYIWKTLNSGRVVPGYGHAVLR 340 (458)
T ss_pred HHhcccccccc-chhHHHHHhhcccccccccCchHHHHHHHHHhHHHhccccchhhhhHhhHHhhccccccccccccccc
Confidence 99999999999 99999999999999999999999999999999899998889999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhhh
Q 013583 327 KTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLG 406 (440)
Q Consensus 327 ~~DPRa~~L~~~a~~~~~~~~~~~~a~~le~~~~~~~~~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~G 406 (440)
++|||+.+++++|.+++++||++++...++++++.++.+++|.+|+|||||+++|++++++|+++.-|||++|++||++|
T Consensus 341 ~tDPR~~~~~efA~k~~~~d~l~~l~~~l~~~~p~vl~e~gk~knp~PNVD~~SGvll~~yGl~e~~fyTVLFgVsRa~G 420 (458)
T KOG2617|consen 341 KTDPRYKVQREFALKHLPDDPLFLLVSALYKIAPGVLTEHGKVKNPYPNVDAHSGVLLQYYGLPELFFYTVLFGVSRALG 420 (458)
T ss_pred CCCchhhHHHHHHHhcCCCCcchhhhHHHHHhChHHHHHhcccCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997555699999999999
Q ss_pred HHHhHHHHHHcCCCccCCCccchhHHHHHhhh
Q 013583 407 ICSQLIWDRALGLPLERPKSVTLDWIEKNCKK 438 (440)
Q Consensus 407 w~AH~~Eq~~~~~~i~RP~~~~~~~~~~~~~~ 438 (440)
.++|.+|.+..+.||+||+|+|++++.++++.
T Consensus 421 vlsqliw~ralg~pieRPks~~t~~~~~~~~~ 452 (458)
T KOG2617|consen 421 VLSQLIWDRALGLPIERPKSVSTDWLHRFTNM 452 (458)
T ss_pred HHHHHHHHHHhCCcccCccccchHHHHHHHHH
Confidence 99999999999999999999999999999875
No 7
>PLN02456 citrate synthase
Probab=100.00 E-value=3.1e-106 Score=837.92 Aligned_cols=405 Identities=47% Similarity=0.689 Sum_probs=376.0
Q ss_pred hhhHHHHHHHHCHHHHHHHHHHHHhhCCccccceehhhhccccccccccccccceecCCCCe-eecCCCHHHHhhhCCCC
Q 013583 6 DLDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAA 84 (440)
Q Consensus 6 ~~~l~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~t~~~~~~Gl~g~~~~~t~is~iD~~~Gi-~YRGy~I~eL~~~~~~~ 84 (440)
.+.++..+.+.++++...|++|++ |++++|.+|+| +||+|+.+++|+||+|||++|+ +||||+|+||++++
T Consensus 31 g~~~~~~i~~~~~~~~~~~~~l~~--~~~~~g~~~~d---~Gl~~~~~~~s~IS~iDg~~G~L~YRGy~I~dLa~~~--- 102 (455)
T PLN02456 31 GKDYESPLSELGPVQAERLKKIKA--GKDDLGLKTVD---PGYRNTAPVLSEISLIDGDEGILRFRGYPIEELAEKS--- 102 (455)
T ss_pred CcEEEEehhccCCcccchhhhccc--CcCccCCEecC---cccCCceeeeeeceEEeCCCCEEEECCccHHHHHhcC---
Confidence 345666777778888999999988 88899999987 8999999999999999999996 99999999999987
Q ss_pred CCCCCCcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhc
Q 013583 85 KPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKG 164 (440)
Q Consensus 85 ~~~~~~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~L~~~vs~L~~~~~~~~~~~~~ 164 (440)
+||||+||||||+|||++|+++|+++|.+++.+|+++.++|++||+++|||++|+++|++|++++++...|..|
T Consensus 103 ------~feevayLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vsal~~~~~~~~~~~~g 176 (455)
T PLN02456 103 ------PFEEVAYLLLYGNLPTKEQLADWEAELRQHSAVPEHVLDVIDALPHDAHPMTQLVSGVMALSTFSPDANAYLRG 176 (455)
T ss_pred ------CHHHHHHHHHcCcCCCHHHHHHHHHHHHHhcCCCHHHHHHHHhCCCcCCcHHHHHHHHHhhhhcCcchhhhhcc
Confidence 49999999999999999999999999999999999999999999999999999999999999999988777777
Q ss_pred cCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCCHHHHHHhhhcC-------CchHHHHHHHHHHHHh
Q 013583 165 IHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIH 237 (440)
Q Consensus 165 ~~~~~~~~~~~~~a~~liA~~p~i~a~~y~~~~~~~~~~~p~~~l~~~~n~l~ml~~-------~~~~~~~~l~~~Lvl~ 237 (440)
.++..+|+..++++++|||++|+|+|++||+++|.+ ++.|++++||++||++||++ |++..+++||++||||
T Consensus 177 ~~~~~~~~~~~~~a~rliAk~p~iaA~~yr~~~g~~-~~~P~~~ls~a~Nfl~Ml~~~~~~~~~p~~~~~~~l~~~LiLh 255 (455)
T PLN02456 177 QHKYKSWEVRDEDIVRLIGKLPTLAAAIYRRMYGRG-PVIPDNSLDYAENFLYMLGSLGDRSYKPDPRLARLLDLYFIIH 255 (455)
T ss_pred cCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCCCCCCHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHeee
Confidence 666678999999999999999999999999988754 77899999999999999976 7889999999999999
Q ss_pred cCCCCCCCchhHHHHHh-hcCcChHHHHHHHHhhhcccccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCc
Q 013583 238 SDHEGGNVSAHTGHLVA-SALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKV 316 (440)
Q Consensus 238 ADHeg~n~St~aaRv~a-St~ad~y~avaAgl~al~GplHGGA~~~~~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~~~~ 316 (440)
|||| +|+|||++|+++ ||++|+|+||+|||++|+||+|||||++|++||.+| + +++++++||++.+++|++
T Consensus 256 ADHe-~n~ST~aar~~a~St~ad~ysavaAgi~aL~GPlHGGA~e~v~~~l~ei----~---~~~~v~~~v~~~l~~~~~ 327 (455)
T PLN02456 256 ADHE-GGCSTAAARHLVGSSGVDPYTSVAAGVNALAGPLHGGANEAVLKMLKEI----G---TVENIPEYVEGVKNSKKV 327 (455)
T ss_pred ccCC-CCchhHHHHHHHhccCCCHHHHHHHHhhhcCCCcccChHHHHHHHHHHh----C---CHHHHHHHHHHHHhCCCc
Confidence 9999 999999999999 999999999999999999999999999999999887 5 578999999999999999
Q ss_pred ccccCCCCCCCCCccHHHHHHHHHhh---CCCChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCccc
Q 013583 317 VPGFGHGVLRKTDPRYTCQREFALKH---LPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEAR 393 (440)
Q Consensus 317 ipGfGH~vy~~~DPRa~~L~~~a~~~---~~~~~~~~~a~~le~~~~~~~~~~~~~~~l~pNvD~~~a~l~~~lGlp~~~ 393 (440)
||||||||||..|||+++|+++++++ .+++++++++.++|+++.. +++++.|++|||||||+|+|++.||||+ +
T Consensus 328 l~GFGHrvyk~~DPRa~~L~~~a~~l~~~~~~~~~~~ia~~le~~~~~--~~~~~~r~l~pNVDfysg~l~~~lGip~-~ 404 (455)
T PLN02456 328 LPGFGHRVYKNYDPRAKCIREFALEVFKHVGDDPLFKVASALEEVALL--DEYFKVRKLYPNVDFYSGVLLRALGFPE-E 404 (455)
T ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH--HHhcCCCCCCcCcHHHHHHHHHHcCcCh-h
Confidence 99999999999999999999999966 4678999999999998733 6678899999999999999999999995 9
Q ss_pred chhhHHhhhhhhhHHHhHHHHHHcC-CCccCCCccchhHHHHHh
Q 013583 394 YYTVLFGVSRSLGICSQLIWDRALG-LPLERPKSVTLDWIEKNC 436 (440)
Q Consensus 394 ~~t~lF~isR~~Gw~AH~~Eq~~~~-~~i~RP~~~~~~~~~~~~ 436 (440)
+||++|++||++||+||++||...+ .+|+||+|+|+|...+.|
T Consensus 405 ~~t~lFaisR~~Gw~AH~~E~~~~~~~ri~RP~~~Y~G~~~~~~ 448 (455)
T PLN02456 405 FFTVLFAVSRAAGYLSQWDEALGLPDERIMRPKQVYTGEWLRHY 448 (455)
T ss_pred hccchhhhhhHHHHHHHHHHHHhCCcccccCCCccccCCCcccc
Confidence 9999999999999999999999864 479999999999976655
No 8
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains three Arabidopsis peroxisomal CS proteins, CYS1, -2, and -3 which are involved in the glyoxylate cycle. AthCYS1, in addition to a peroxisomal targeting sequence, has a predicted secretory signal peptide; it may be targeted to both the secretory pathway and the peroxisomes and is thought to be located in the extracellular matrix. AthCSY1 is expr
Probab=100.00 E-value=4e-101 Score=791.33 Aligned_cols=385 Identities=26% Similarity=0.381 Sum_probs=343.2
Q ss_pred HHHHHHhhCCccccceehhhhccccccccccccccceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCcHHHHHHHHHhC
Q 013583 24 LKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTG 102 (440)
Q Consensus 24 ~~~l~~~~~~~~~~~~t~~~~~~Gl~g~~~~~t~is~iD~~~Gi-~YRGy~I~eL~~~~~~~~~~~~~~~Eev~~LLl~G 102 (440)
|++|++.-. ..|..++ .+||+|+.+++|+||+|||++|+ +||||+|+||++++ +||||+||||+|
T Consensus 10 ~~~~~~~~~--~~g~~~~---~~Gl~~~~~~~t~Is~iDg~~G~L~YRGy~I~dLa~~~---------~feEv~~LLl~G 75 (410)
T cd06115 10 FKKIKAGKD--DKGLRLY---DPGYLNTAVVRSKISYIDGDKGILRYRGYPIEELAEKS---------TFLEVAYLLIYG 75 (410)
T ss_pred HHHhcCCcc--cCCCccc---CCccCCceEEEeeCeeEeCCCCeEEECCccHHHHHhcC---------CHHHHHHHHHcC
Confidence 677777321 3677775 58999999999999999999996 99999999999986 499999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHH-hh-hccCCCCCCCchHHHHHH
Q 013583 103 KVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEA-YE-KGIHKSKYWEPTYEDSLN 180 (440)
Q Consensus 103 ~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~L~~~vs~L~~~~~~~~~-~~-~~~~~~~~~~~~~~~a~~ 180 (440)
+|||++|+++|+++|.+++.+|+.+.++|++||+++|||++|+++|++|+.+++.... .. .++.+ .++..++++++
T Consensus 76 ~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~~~~~~~~~~~~~~~~--~~~~~~~~a~r 153 (410)
T cd06115 76 NLPTKSQLSDWEFAVSQHTAVPTGVLDMIKSFPHDAHPMGMLVSAISALSAFHPEANPALAGQDIYK--NKQVRDKQIVR 153 (410)
T ss_pred CCcCHHHHHHHHHHHHHccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCcccccccccccccc--CHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999986543100 00 01111 23567788999
Q ss_pred HHHhhHHHHHHHHHHHhcCCcccCCCCCCCHHHHHHhhhcC-------CchHHHHHHHHHHHHhcCCCCCCCchhHHHHH
Q 013583 181 LIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLV 253 (440)
Q Consensus 181 liA~~p~i~a~~y~~~~~~~~~~~p~~~l~~~~n~l~ml~~-------~~~~~~~~l~~~Lvl~ADHeg~n~St~aaRv~ 253 (440)
|+|++|+|+|++||++.|. ++++|++++||++||++||++ |++..+++||++|||||||| +|+||||+|++
T Consensus 154 liA~~p~i~A~~~r~~~g~-~~~~p~~~ls~a~NFl~Ml~g~~~~~~~p~~~~~~~l~~~liL~ADH~-~naSTfaarv~ 231 (410)
T cd06115 154 ILGKAPTIAAAAYRRRAGR-PPNLPSQDLSYTENFLYMLDSLGERKYKPNPRLARALDILFILHAEHE-MNCSTAAVRHL 231 (410)
T ss_pred HHHHHHHHHHHHHHHHcCC-CCcCCCCCCCHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHhhccC-CCchHHHHHHH
Confidence 9999999999999998764 588999999999999999974 57788999999999999998 99999999999
Q ss_pred hhcCcChHHHHHHHHhhhcccccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHH
Q 013583 254 ASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYT 333 (440)
Q Consensus 254 aSt~ad~y~avaAgl~al~GplHGGA~~~~~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~~~~ipGfGH~vy~~~DPRa~ 333 (440)
|||++|+|+||+|||++|+||+|||||++|++||+++ + +++++++||++.+++|++||||||||||..|||++
T Consensus 232 aSt~ad~ysav~agi~aL~GplHGGA~e~v~~~l~ei----~---~~~~~~~~v~~~~~~~~ri~GFGHrvYk~~DPRa~ 304 (410)
T cd06115 232 ASSGVDVYTAVAGAVGALYGPLHGGANEAVLRMLAEI----G---TVENIPAFIEGVKNRKRKLSGFGHRVYKNYDPRAK 304 (410)
T ss_pred HhcCCCHHHHHHHHHhhccCCcccchHHHHHHHHHHh----C---ChHHHHHHHHHHHhcCCcccCCCCCCCCCCCccHH
Confidence 9999999999999999999999999999999999887 4 56899999999999999999999999999999999
Q ss_pred HHHHHHHhhC---CCChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhhhHHHh
Q 013583 334 CQREFALKHL---PDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQ 410 (440)
Q Consensus 334 ~L~~~a~~~~---~~~~~~~~a~~le~~~~~~~~~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~Gw~AH 410 (440)
+|+++++++. ++++++++++++|+++.+ .++++.|+++||||||+|++++.||||+ ++||++|++||++||+||
T Consensus 305 ~L~~~~~~l~~~~~~~~~~~~a~~~e~~~~~--~~~~~~k~l~pNVD~ysa~l~~~lG~p~-~~~t~lFa~sR~~Gw~AH 381 (410)
T cd06115 305 IIKKLADEVFEIVGKDPLIEIAVALEKAALS--DEYFVKRKLYPNVDFYSGLIYRAMGFPT-DFFPVLFAIPRMAGYLAH 381 (410)
T ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHHHHHh--hhhhcccCCCCChHHHHHHHHHHcCCCh-HhhhhHHHHHhhhhHHHH
Confidence 9999999874 457999999999998765 4567789999999999999999999996 999999999999999999
Q ss_pred HHHHHHcC-CCccCCCccchhHHHHHh
Q 013583 411 LIWDRALG-LPLERPKSVTLDWIEKNC 436 (440)
Q Consensus 411 ~~Eq~~~~-~~i~RP~~~~~~~~~~~~ 436 (440)
++||+.++ .+|+||++.|+|...+.|
T Consensus 382 ~~Eq~~~~~~~i~RP~~~Y~G~~~~~~ 408 (410)
T cd06115 382 WRESLDDPDTKIMRPQQLYTGVWLRHY 408 (410)
T ss_pred HHHHHhCCCCcccCcccccCCCCCCCC
Confidence 99999875 579999999999765443
No 9
>cd06107 EcCS_AthCS-per_like Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of ide
Probab=100.00 E-value=1.6e-99 Score=774.51 Aligned_cols=363 Identities=28% Similarity=0.438 Sum_probs=330.7
Q ss_pred hccccccccccccccceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC
Q 013583 44 VIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT 122 (440)
Q Consensus 44 ~~~Gl~g~~~~~t~is~iD~~~Gi-~YRGy~I~eL~~~~~~~~~~~~~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~~ 122 (440)
+.+||+|+++++|+||+|||++|+ +||||+|+||++++ +||||+||||+|+|||++|+++|+++|..++.
T Consensus 5 ~~~GL~~v~~~~t~Is~iDg~~G~L~YRGy~I~dLa~~~---------~feev~yLLl~G~LPt~~el~~f~~~L~~~~~ 75 (382)
T cd06107 5 YDPGYLNTAVCESSITYIDGDKGILLYRGYPIEQLAESS---------TYEEVAYLLLWGELPTQEQYDEFQRRLSEHMM 75 (382)
T ss_pred CCCCcCCeeeEeeeCeeEeCCCCeEEECCccHHHHHhcC---------CHHHHHHHHhCCCCCCHHHHHHHHHHHHHccC
Confidence 457999999999999999999995 99999999999986 59999999999999999999999999999999
Q ss_pred CCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCC---CchHHHHHHHHHhhHHHHHHHHHHHhcC
Q 013583 123 VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYW---EPTYEDSLNLIARVPVVAAYVYQRIYKD 199 (440)
Q Consensus 123 lp~~v~~~i~~lP~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~~~~---~~~~~~a~~liA~~p~i~a~~y~~~~~~ 199 (440)
+|+.|.++|++||+++|||++|+++|++|+++++.......+ +.|| +..++++++|+|++|+|+|++||++.|
T Consensus 76 lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~liA~~p~i~A~~yr~~~g- 151 (382)
T cd06107 76 VPESVHRLIQTFPRDAHPMGILCAGLSALSAFYPEAIPAHTG---DLYQNNPEVRDKQIIRTLAKMPTIAAAAYCHRIG- 151 (382)
T ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHHHhhcccCccccchhhc---cccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 999999999999999999999999999999865432111111 3344 566778999999999999999998865
Q ss_pred CcccCCCCCCCHHHHHHhhhcC-------CchHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCcChHHHHHHHHhhhc
Q 013583 200 GKIIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLA 272 (440)
Q Consensus 200 ~~~~~p~~~l~~~~n~l~ml~~-------~~~~~~~~l~~~Lvl~ADHeg~n~St~aaRv~aSt~ad~y~avaAgl~al~ 272 (440)
.++++|++++||++||++||++ |+++.+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+
T Consensus 152 ~~~~~P~~~ls~a~NFL~Ml~g~~~~~~~p~~~~~~~l~~~LiL~aDHg-~n~ST~aaRv~aSt~ad~~s~v~aai~al~ 230 (382)
T cd06107 152 RPFVYPRANLSYIENFLYMMGYVDQEPYEPNPRLARALDRLWILHADHE-MNCSTSAARHTGSSLADPISCMAAAIAALY 230 (382)
T ss_pred CCCCCCCCCCCHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHhcccC-CcchhHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 3589999999999999999974 56889999999999999998 999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHH
Q 013583 273 GPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLF 349 (440)
Q Consensus 273 GplHGGA~~~~~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~~~~ipGfGH~vy~~~DPRa~~L~~~a~~~~---~~~~~~ 349 (440)
||+||||+++|++||+++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. +.++++
T Consensus 231 GplHGGA~e~v~~~l~ei----~---~~~~~~~~v~~~~~~~~ri~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~ 303 (382)
T cd06107 231 GPLHGGANEAALKMLREI----G---TPENVPAFIERVKNGKRRLMGFGHRVYKNYDPRAKVIREILHEVLTEVEKDPLL 303 (382)
T ss_pred CCcccchHHHHHHHHHHh----C---ChHHHHHHHHHHHhcCCCcCCCCCCCCCCCCccHHHHHHHHHHHHHhcCCcHHH
Confidence 999999999999999887 4 468999999999999999999999999999999999999999874 458999
Q ss_pred HHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhhhHHHhHHHHHHcC-CCccCCCccc
Q 013583 350 QLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALG-LPLERPKSVT 428 (440)
Q Consensus 350 ~~a~~le~~~~~~~~~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~Gw~AH~~Eq~~~~-~~i~RP~~~~ 428 (440)
++++++|+++.+ .++++.|+++||||||+|++++.||||+ ++||++|++||++||+||++||+..+ .+|+||+++|
T Consensus 304 ~~a~~ie~~~~~--~~~~~~k~l~pNvD~~sa~~~~~lG~p~-~~~t~lf~~sR~~Gw~AH~~Eq~~~~~~~i~RP~~~Y 380 (382)
T cd06107 304 KVAMELERIALE--DEYFVSRKLYPNVDFYSGFIYKALGFPP-EFFTVLFAVARTSGWMAHWREMMEDPLQRIWRPRQVY 380 (382)
T ss_pred HHHHHHHHHHHH--HhhhccCCCCcChHHHHHHHHHHcCCCh-hhhhHHHHHHHHHHHHHHHHHHHhCCCCceeCccccc
Confidence 999999997754 4466789999999999999999999995 99999999999999999999999986 5799999999
Q ss_pred hh
Q 013583 429 LD 430 (440)
Q Consensus 429 ~~ 430 (440)
+|
T Consensus 381 ~G 382 (382)
T cd06107 381 TG 382 (382)
T ss_pred CC
Confidence 86
No 10
>COG0372 GltA Citrate synthase [Energy production and conversion]
Probab=100.00 E-value=1.2e-99 Score=772.08 Aligned_cols=370 Identities=31% Similarity=0.451 Sum_probs=336.4
Q ss_pred cceehhhhccccccccccccccceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCcHHHHHHHHHhCCCCCHHHHHHHHH
Q 013583 37 GNITVDMVIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSK 115 (440)
Q Consensus 37 ~~~t~~~~~~Gl~g~~~~~t~is~iD~~~G-i~YRGy~I~eL~~~~~~~~~~~~~~~Eev~~LLl~G~LPt~~el~~f~~ 115 (440)
++.+..++.+||+|+.+++|+||+||+++| ++||||+|+||+++. +||||+||||+|+|||.+|+++|.+
T Consensus 9 ~~~~~~~~~~Gl~~v~~~~t~is~id~~~g~L~yrGy~i~dla~~~---------~feev~~LLl~G~lPt~~el~~~~~ 79 (390)
T COG0372 9 SDVGRFTYDPGLEGVAACETAISYIDGDGGILRYRGYDIEDLAEKS---------SFEEVAYLLLYGELPTKAELAAFFA 79 (390)
T ss_pred CCccccccCCcccccceeeeeeeEecCCCceEEECCccHHHHHhhc---------CHHHHHHHHHcCcCCChHHHHHHHH
Confidence 677788899999999999999999999999 599999999999995 5999999999999999999999999
Q ss_pred HHHhhcCCCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHH
Q 013583 116 ELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQR 195 (440)
Q Consensus 116 ~L~~~~~lp~~v~~~i~~lP~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~liA~~p~i~a~~y~~ 195 (440)
++..++.+|+++.+++..+|++.|||++|+++|++|+..+... ... ....+.++|++|++|+|+|++||.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~p~~~hpm~~l~~~vs~l~~~~~~~------~~~----~~~~~~a~rlia~~pti~a~~yr~ 149 (390)
T COG0372 80 KLAARRTLPEQVIRLLESLPRDAHPMAVLRTAVSALSAFYPDK------LDL----NDRREAALRLIAKLPTIAAAVYRY 149 (390)
T ss_pred HHHHhcCccHHHHHHHHhCCCCcCcHHHHHHHHHHhccccccc------ccc----chhHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999999999999999999888743211 111 126778999999999999999999
Q ss_pred HhcCCcccCCCCCCCHHHHHHhhhcC--Cc-hHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCcChHHHHHHHHhhhc
Q 013583 196 IYKDGKIIPKDDSLDYGGNFSHMLGF--DD-PKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLA 272 (440)
Q Consensus 196 ~~~~~~~~~p~~~l~~~~n~l~ml~~--~~-~~~~~~l~~~Lvl~ADHeg~n~St~aaRv~aSt~ad~y~avaAgl~al~ 272 (440)
..|. .++.|+++++|++||++||.+ |+ |..+++||++|||||||| +|+||||+||++||++|+|+||+|||++|+
T Consensus 150 ~~g~-~~i~p~~~~s~a~nfL~ml~g~~p~~~~~~~a~d~~LiL~ADHe-~NASTftarvvaST~sd~ys~i~agi~aL~ 227 (390)
T COG0372 150 SRGE-PPIAPDPDLSYAENFLYMLFGEPPSPPVEARAMDRALILHADHE-LNASTFTARVVASTGSDLYACIAAGIGALK 227 (390)
T ss_pred hcCC-CCccCCCCccHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHhcCCcHHHHHHHHHHHcC
Confidence 8765 477799999999999999976 56 589999999999999999 999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHH
Q 013583 273 GPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLF 349 (440)
Q Consensus 273 GplHGGA~~~~~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~~~~ipGfGH~vy~~~DPRa~~L~~~a~~~~---~~~~~~ 349 (440)
||+||||||+|++||++| ++ ..+++++||++.+++|++||||||||||++|||+++|+++++++. ++++++
T Consensus 228 GPlHGGAne~v~~ml~ei----~~--~~~~~~~~v~~~l~~~~~imGFGHRVYk~~DPRa~~lk~~a~~l~~~~g~~~~~ 301 (390)
T COG0372 228 GPLHGGANEAVMKMLEEI----GS--SGESAEAYVRKALDRKERIMGFGHRVYKNYDPRAKVLKELAEKLGKELGDLKLY 301 (390)
T ss_pred CCccCChHHHHHHHHHHH----cc--cchhHHHHHHHHHhCCCCcCCCCCCCCCCCCchHHHHHHHHHHHHhhcCchhHH
Confidence 999999999999999988 42 233499999999999999999999999999999999999999984 445899
Q ss_pred HHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhhhHHHhHHHHHHcCCCccCCCccch
Q 013583 350 QLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTL 429 (440)
Q Consensus 350 ~~a~~le~~~~~~~~~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~Gw~AH~~Eq~~~~~~i~RP~~~~~ 429 (440)
+++.++|+++.+ ..++ .|++|||||||+|++++.||||. ++||+||++||++||+||++||+.++.+|+||++.|+
T Consensus 302 ~~a~~~e~~~l~--~~~~-~k~l~PNvDfysg~v~~~lGiP~-~~fT~lFaiaR~~GW~AH~~Eq~~~~~riiRPr~~Y~ 377 (390)
T COG0372 302 EIAEELEEIALE--DLGF-EKKLYPNVDFYSGIVYRALGIPT-DMFTPLFAIARTVGWIAHWIEQKEDGNKIIRPRALYT 377 (390)
T ss_pred HHHHHHHHHHHH--hhhc-ccCCCCccccchHHHHHHcCCCH-HhhhhhhhhhhHHHHHHHHHHHHhccCCccCChhhhc
Confidence 999999999965 2334 89999999999999999999996 8999999999999999999999999557999999999
Q ss_pred hHHHHHhh
Q 013583 430 DWIEKNCK 437 (440)
Q Consensus 430 ~~~~~~~~ 437 (440)
|...+.+.
T Consensus 378 G~~~r~~~ 385 (390)
T COG0372 378 GPEERDYV 385 (390)
T ss_pred Cccccccc
Confidence 99887654
No 11
>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group is similar to gram-negative Escherichia coli (Ec) CS (type II, gltA) and Arabidopsis thaliana (Ath) peroxisomal (Per) CS. However EcCS and AthPerCS are not found in this group. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers w
Probab=100.00 E-value=9e-100 Score=776.87 Aligned_cols=365 Identities=26% Similarity=0.405 Sum_probs=332.0
Q ss_pred hccccccccccccccceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC
Q 013583 44 VIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT 122 (440)
Q Consensus 44 ~~~Gl~g~~~~~t~is~iD~~~Gi-~YRGy~I~eL~~~~~~~~~~~~~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~~ 122 (440)
+.+||+|+.+++|+||+|||++|+ +||||+|+||++++ +||||+||||+|+|||++|+++|+++|.+++.
T Consensus 5 ~~~Gl~~v~~~~t~Is~iDg~~G~L~YRGy~I~dL~~~~---------~feEv~yLLl~G~lPt~~el~~f~~~L~~~~~ 75 (384)
T cd06116 5 YDPAYLNTASCKSAITYIDGEKGILRYRGYPIEQLAEQS---------SYLEVAYLLLHGELPTKERLAQWVYDITRHTM 75 (384)
T ss_pred CCCCcCCeeEEeeEeeeEeCCCCeEEECCccHHHHhccC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC
Confidence 347999999999999999999995 99999999999986 49999999999999999999999999999999
Q ss_pred CCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcc
Q 013583 123 VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKI 202 (440)
Q Consensus 123 lp~~v~~~i~~lP~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~liA~~p~i~a~~y~~~~~~~~~ 202 (440)
+|+.+.+++++||+++|||++|+++|++|++++++...+ ...+...+++++|+|++|+|+|++||+++|. ++
T Consensus 76 lp~~v~~~l~~~p~~~hPM~~L~~~vs~l~~~~~~~~~~-------~~~~~~~~~~~rliA~~p~i~A~~~r~~~g~-~~ 147 (384)
T cd06116 76 THENLKKFMDGFRYDAHPMGILISSVAALSTFYPEAKNI-------GDEEQRNKQIIRLIGKMPTIAAFAYRHRLGL-PY 147 (384)
T ss_pred CCHHHHHHHHhcCcCCCcHHHHHHHHHhhhhcCcccccc-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-Cc
Confidence 999999999999999999999999999999876543111 1123456678999999999999999998764 58
Q ss_pred cCCCCCCCHHHHHHhhhcC-------CchHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCcChHHHHHHHHhhhcccc
Q 013583 203 IPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPL 275 (440)
Q Consensus 203 ~~p~~~l~~~~n~l~ml~~-------~~~~~~~~l~~~Lvl~ADHeg~n~St~aaRv~aSt~ad~y~avaAgl~al~Gpl 275 (440)
++|++++||++||++||++ |++..+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+
T Consensus 148 ~~p~~~ls~a~Nfl~Ml~g~~~~~~~p~~~~~~~l~~~LiL~ADH~-~n~STfaarv~aSt~ad~ysav~agi~aL~Gpl 226 (384)
T cd06116 148 VLPDNDLSYTGNFLSMLFKMTEPKYEPNPVLAKALDVLFILHADHE-QNCSTSAMRSVGSSRADPYTAVAAAVAALYGPL 226 (384)
T ss_pred cCCCCCCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhhhccCC-CCchhHHHhhhhccCCCHHHHHHHHHHhccCCc
Confidence 8999999999999999974 57888999999999999998 999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHH
Q 013583 276 HGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLV 352 (440)
Q Consensus 276 HGGA~~~~~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~~~~ipGfGH~vy~~~DPRa~~L~~~a~~~~---~~~~~~~~a 352 (440)
|||||++|++||+++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. +.+++++++
T Consensus 227 HGGA~e~v~~~l~ei----~---~~~~~~~~v~~~~~~~~ri~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~ia 299 (384)
T cd06116 227 HGGANEAVLRMLQQI----G---SPKNIPDFIETVKQGKERLMGFGHRVYKNYDPRARIIKKIADEVFEATGRNPLLDIA 299 (384)
T ss_pred ccchHHHHHHHHHHh----C---ChHHHHHHHHHHHhcCCcccCCCCCCCCCCChHHHHHHHHHHHHHHhhCCCHHHHHH
Confidence 999999999999887 4 467899999999999999999999999999999999999998873 457899999
Q ss_pred HHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhhhHHHhHHHHHHcC-CCccCCCccchhH
Q 013583 353 SKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALG-LPLERPKSVTLDW 431 (440)
Q Consensus 353 ~~le~~~~~~~~~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~Gw~AH~~Eq~~~~-~~i~RP~~~~~~~ 431 (440)
.++|+++.+ .++++.|+++||||||+|++++.||||+ ++||++|++||++||+||++||++.+ .+|+||++.|+|.
T Consensus 300 ~~~e~~~~~--~~~~~~k~l~pNvD~ysa~l~~~lGip~-~~~t~lf~isR~~Gw~AH~~Eq~~~~~~~i~RP~~~Y~G~ 376 (384)
T cd06116 300 VELEKIALE--DEYFISRKLYPNVDFYSGLIYQALGFPT-EAFTVLFAIPRTSGWLAQWIEMLRDPEQKIARPRQVYTGP 376 (384)
T ss_pred HHHHHHHHH--hhhhcccCCCCChHHHHHHHHHHhCCCh-hhccchhhhhhhchHHHHHHHHHhCcCCcccCccccccCC
Confidence 999997755 4567789999999999999999999996 99999999999999999999999874 5699999999997
Q ss_pred HHHHh
Q 013583 432 IEKNC 436 (440)
Q Consensus 432 ~~~~~ 436 (440)
..+.|
T Consensus 377 ~~~~~ 381 (384)
T cd06116 377 RDRDY 381 (384)
T ss_pred CCCCC
Confidence 65543
No 12
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-I, one of two CS isozymes in the gram-positive B. subtilis. The majority of CS activity in B. subtilis is provided by the other isozyme, BsCS-II (not included in this group). BsCS-
Probab=100.00 E-value=2.8e-98 Score=758.47 Aligned_cols=346 Identities=25% Similarity=0.348 Sum_probs=326.7
Q ss_pred cccccccccccccceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCC
Q 013583 46 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 124 (440)
Q Consensus 46 ~Gl~g~~~~~t~is~iD~~~G-i~YRGy~I~eL~~~~~~~~~~~~~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~~lp 124 (440)
+||+|+++++|+||+||+++| ++||||+|+||++++ +||||+||||+|+|||++|+++|+.+|..++.+|
T Consensus 1 ~Gl~gv~~~~t~Is~idg~~G~L~YRGy~i~dL~~~~---------~feev~~LLl~G~lP~~~el~~f~~~l~~~~~lp 71 (349)
T cd06109 1 PGLEGVVAAETVLSDVDGEAGRLIIRGYSVEDLAGSA---------SFEDVAALLWNGFFPDLPELEEFRAALAAARALP 71 (349)
T ss_pred CCcCCceeeeeeceeEeCCCCeEEECCccHHHHHhhC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCC
Confidence 599999999999999999999 699999999999986 5999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccC
Q 013583 125 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 204 (440)
Q Consensus 125 ~~v~~~i~~lP~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~liA~~p~i~a~~y~~~~~~~~~~~ 204 (440)
+.+.++|++| +++|||++|+++|++++.. ..++++++|+|++|+|+|++||++.|. +++.
T Consensus 72 ~~v~~~~~~~-~~~~pm~~l~~~~s~~~~~------------------~~~~~a~~liA~~p~i~a~~~r~~~g~-~~~~ 131 (349)
T cd06109 72 DVVAALLPAL-AGLDPMDALRALLALLPDS------------------PDLATALRLLAAAPVITAALLRLSRGK-QPIA 131 (349)
T ss_pred HHHHHHHHhC-CCcCHHHHHHHHHHhcCch------------------hHHHHHHHHHHHHHHHHHHHHHHHcCC-CCcC
Confidence 9999999999 8999999999999999752 136789999999999999999988753 5889
Q ss_pred CCCCCCHHHHHHhhhcC--CchHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCcChHHHHHHHHhhhcccccccchHH
Q 013583 205 KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 282 (440)
Q Consensus 205 p~~~l~~~~n~l~ml~~--~~~~~~~~l~~~Lvl~ADHeg~n~St~aaRv~aSt~ad~y~avaAgl~al~GplHGGA~~~ 282 (440)
|++++||++||++||++ |++.+.++||++|||||||| +|+||||+|+++||++|+|+||+|||++|+||+|||||++
T Consensus 132 p~~~ls~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~ADHg-~n~ST~aaRv~aSt~ad~~savaagi~al~GplHGGA~e~ 210 (349)
T cd06109 132 PDPSLSHAADYLRMLTGEPPSEAHVRALDAYLVTVADHG-MNASTFTARVIASTEADLTSAVLGAIGALKGPLHGGAPGP 210 (349)
T ss_pred CCCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhHhcccC-CCchhhHHHHHhccCCcHHHHHHHHHHhccCCcccChHHH
Confidence 99999999999999986 78889999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhh
Q 013583 283 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPI 362 (440)
Q Consensus 283 ~~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~~~~ipGfGH~vy~~~DPRa~~L~~~a~~~~~~~~~~~~a~~le~~~~~~ 362 (440)
|++||+++ + +++++++||++.+++|++||||||||||..|||+++|+++++++..+++++++++++|+++.++
T Consensus 211 v~~~l~ei----~---~~~~~~~~v~~~l~~~~~i~GfGH~vyk~~DPRa~~L~~~~~~~~~~~~~~~~a~~ie~~~~~~ 283 (349)
T cd06109 211 VLDMLDAI----G---TPENAEAWLREALARGERLMGFGHRVYRVRDPRADVLKAAAERLGAPDERLEFAEAVEQAALAL 283 (349)
T ss_pred HHHHHHHh----C---ChhhHHHHHHHHHHcCCeecCCCCCCCCCCCcCHHHHHHHHHHhccCChHHHHHHHHHHHHHHH
Confidence 99999887 4 4578999999999999999999999999999999999999999988889999999999999887
Q ss_pred HhhcCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhhhHHHhHHHHHHcCCCccCCCccchh
Q 013583 363 LTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLD 430 (440)
Q Consensus 363 ~~~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~Gw~AH~~Eq~~~~~~i~RP~~~~~~ 430 (440)
+.++++.|+++||||||+|++++.||||+ ++||++|++||++||+||++||++++ +|+||++.|+|
T Consensus 284 ~~~~~~~r~l~pNvD~~sg~l~~~lGip~-~~~t~lF~isR~~Gw~AH~~Eq~~~~-~~~RP~~~Y~G 349 (349)
T cd06109 284 LREYKPGRPLETNVEFYTALLLEALGLPR-EAFTPTFAAGRTAGWTAHVLEQARTG-RLIRPQSRYVG 349 (349)
T ss_pred HHHhcCCCCCCCCchhhHHHHHHHhCCCh-hhhhhHHHHHhHHHHHHHHHHHHhcC-CCcCCCcccCC
Confidence 77788889999999999999999999996 99999999999999999999999987 58899999986
No 13
>TIGR01798 cit_synth_I citrate synthase I (hexameric type). This model describes one of several distinct but closely homologous classes of citrate synthase, the protein that brings carbon (from acetyl-CoA) into the TCA cycle. This form, class I, is known to be hexameric and allosterically inhibited by NADH in Escherichia coli, Acinetobacter anitratum, Azotobacter vinelandii, Pseudomonas aeruginosa, etc. In most species with a class I citrate synthase, a dimeric class II isozyme is found. The class II enzyme may act primarily on propionyl-CoA to make 2-methylcitrate or be bifunctional, may be found among propionate utilization enzymes, and may be constitutive or induced by propionate. Some members of this model group as class I enzymes, and may be hexameric, but have shown regulatory properties more like class II enzymes.
Probab=100.00 E-value=1.6e-98 Score=772.57 Aligned_cols=375 Identities=26% Similarity=0.402 Sum_probs=333.0
Q ss_pred HHHHHHhhCCccccceehhhhccccccccccccccceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCcHHHHHHHHHhC
Q 013583 24 LKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTG 102 (440)
Q Consensus 24 ~~~l~~~~~~~~~~~~t~~~~~~Gl~g~~~~~t~is~iD~~~Gi-~YRGy~I~eL~~~~~~~~~~~~~~~Eev~~LLl~G 102 (440)
|++++.+. |..+ +.+||+|+.+++|+||+|||++|+ +||||+|+||++++ +||||+||||+|
T Consensus 20 ~~~~~~~~-----~~~~---~~~GL~~v~~~~s~Is~iDg~~G~L~YRGy~I~dL~~~~---------~feEv~yLLl~G 82 (412)
T TIGR01798 20 IRKLYKQT-----GLFT---FDPGFTSTASCESKITFIDGDKGILLYRGYPIDQLATKS---------DYLEVCYLLLNG 82 (412)
T ss_pred hHhhhhcC-----CCCc---CCCCCCCceeEeeeCeeEeCCCCEEEECCccHHHHhccC---------CHHHHHHHHHcC
Confidence 66666542 3333 458999999999999999999995 99999999999986 499999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCCchHHHHHHHH
Q 013583 103 KVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLI 182 (440)
Q Consensus 103 ~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~li 182 (440)
+|||++|+++|+++|.+++.+|+.+.++|++||+++|||++|+++|++|+.+++ +.. +....+...+++++|+
T Consensus 83 ~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~~~------~~~-~~~~~~~~~~~a~~li 155 (412)
T TIGR01798 83 ELPTAEQKDEFDDTVTRHTMVHEQVTRFFNGFRRDAHPMAVMVGVVGALSAFYH------DSL-DINDPRHREIAAIRLI 155 (412)
T ss_pred CCCCHHHHHHHHHHHHHccCCCHHHHHHHHhCCCcCChHHHHHHHHHHHhhhCc------ccc-ccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987432 111 1011244566899999
Q ss_pred HhhHHHHHHHHHHHhcCCcccCCCCCCCHHHHHHhhhcC-------CchHHHHHHHHHHHHhcCCCCCCCchhHHHHHhh
Q 013583 183 ARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVAS 255 (440)
Q Consensus 183 A~~p~i~a~~y~~~~~~~~~~~p~~~l~~~~n~l~ml~~-------~~~~~~~~l~~~Lvl~ADHeg~n~St~aaRv~aS 255 (440)
|++|+|+|++||++.| .++++|++++||++||++||++ |++..+++||++|||||||| +|+||||+|+++|
T Consensus 156 A~~p~i~A~~yr~~~g-~~~i~p~~~ls~a~Nfl~Ml~g~~~~~~~p~~~~~~~l~~~LiL~aDHg-~n~STfaaRv~aS 233 (412)
T TIGR01798 156 AKIPTLAAMSYKYSIG-QPFVYPRNDLSYAENFLHMMFATPCEDYKVNPVLARAMDRIFILHADHE-QNASTSTVRLAGS 233 (412)
T ss_pred HHHHHHHHHHHHHhCC-CCCcCCCCCCCHHHHHHHHhcCCCCccCCCCHHHHHHHHHHHHHhhcCC-CCcccceeeeeec
Confidence 9999999999998765 3588999999999999999974 57889999999999999998 9999999999999
Q ss_pred cCcChHHHHHHHHhhhcccccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC--CcccccCCCCCCCCCccHH
Q 013583 256 ALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSG--KVVPGFGHGVLRKTDPRYT 333 (440)
Q Consensus 256 t~ad~y~avaAgl~al~GplHGGA~~~~~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~~--~~ipGfGH~vy~~~DPRa~ 333 (440)
|++|+|+||+|||++|+||+||||+++|++||.++ + +++++++||++.++++ ++||||||||||..|||++
T Consensus 234 t~ad~ysav~agi~aL~GplHGGA~e~v~~ml~ei----~---~~~~~~~~v~~~~~~~~~~~i~GFGHrvyk~~DPRa~ 306 (412)
T TIGR01798 234 SGANPFACIAAGIAALWGPAHGGANEAALKMLEEI----G---SVKNIPEFIKKVKDKNDPFRLMGFGHRVYKNYDPRAK 306 (412)
T ss_pred CCCCHHHHHHHHhhhccCccccchHHHHHHHHHHh----C---ChhHHHHHHHHHHhcCCCccccCCCCCCCCCCCccHH
Confidence 99999999999999999999999999999999887 4 4579999999999887 5999999999999999999
Q ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhhhHH
Q 013583 334 CQREFALKHL-----PDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGIC 408 (440)
Q Consensus 334 ~L~~~a~~~~-----~~~~~~~~a~~le~~~~~~~~~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~Gw~ 408 (440)
+|+++++++. ..++++++++++|+++.+ .++++.|+++||||||+|+++++||||+ ++||++|++||++||+
T Consensus 307 ~L~~~a~~l~~~~g~~~~~~~~~a~~~e~~~~~--~~~~~~k~l~pNvD~~sa~l~~~lG~p~-~~~t~lFaisR~~Gw~ 383 (412)
T TIGR01798 307 VMRETCHEVLKELGLHDDPLFKLAMELEKIALN--DPYFIERKLYPNVDFYSGIILKAMGIPT-SMFTVIFALARTVGWI 383 (412)
T ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHh--hhhhccCCCCcChHHHHHHHHHHcCCCh-hhhhhHHHHHhhhhHH
Confidence 9999998752 247899999999997754 4567789999999999999999999996 9999999999999999
Q ss_pred HhHHHHHHcC-CCccCCCccchhHHHH
Q 013583 409 SQLIWDRALG-LPLERPKSVTLDWIEK 434 (440)
Q Consensus 409 AH~~Eq~~~~-~~i~RP~~~~~~~~~~ 434 (440)
||++||..++ .+|+||+++|+|...+
T Consensus 384 AH~~Eq~~~~~~~l~RP~~~Y~G~~~~ 410 (412)
T TIGR01798 384 SHWSEMISDPGQKIGRPRQLYTGEEQR 410 (412)
T ss_pred HHHHHHHhCCCCcccCchhccCCCCCC
Confidence 9999999974 5799999999997544
No 14
>PRK12351 methylcitrate synthase; Provisional
Probab=100.00 E-value=3.2e-98 Score=763.38 Aligned_cols=357 Identities=24% Similarity=0.357 Sum_probs=326.9
Q ss_pred ccccccccccccccceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCC
Q 013583 45 IGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 123 (440)
Q Consensus 45 ~~Gl~g~~~~~t~is~iD~~~G-i~YRGy~I~eL~~~~~~~~~~~~~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~~l 123 (440)
.+||+||.+.+|.||+||+++| |+||||+|+||++++ +||||+||||+|+|||++|+++|+++|..++.+
T Consensus 9 ~~GL~gv~~~~T~is~i~~~~g~L~YRGy~I~dLa~~~---------~feeva~LL~~G~LP~~~el~~f~~~L~~~~~l 79 (378)
T PRK12351 9 SVALSGVVAGNTALCTVGKSGNDLHYRGYDILDLAEHC---------EFEEVAHLLVHGKLPTQAELAAYKTKLKALRGL 79 (378)
T ss_pred CCCCCCeeeccccCeeEecCCCEEEECCccHHHHHhcC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCC
Confidence 3899999999999999999988 699999999999986 499999999999999999999999999999999
Q ss_pred CHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCccc
Q 013583 124 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKII 203 (440)
Q Consensus 124 p~~v~~~i~~lP~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~liA~~p~i~a~~y~~~~~~~~~~ 203 (440)
|+++.++|++||+++|||++|+++|++|+++++.. .+..++..++++++|||++|+|+|++||++.+ ++++
T Consensus 80 p~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~d~~~--------~~~~~~~~~~~a~rliA~~p~i~a~~~r~~~~-~~~~ 150 (378)
T PRK12351 80 PAAVKTVLEAIPAAAHPMDVMRTGVSVLGCLLPEK--------EDHNFSGARDIADRLLASLGSILLYWYHYSHN-GRRI 150 (378)
T ss_pred CHHHHHHHHhCCccCCHHHHHHHHHHhhcccCccc--------ccCChHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcc
Confidence 99999999999999999999999999999865431 11224567788999999999999999999876 4455
Q ss_pred C-CCCCCCHHHHHHhhhcC--CchHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCcChHHHHHHHHhhhcccccccch
Q 013583 204 P-KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLAN 280 (440)
Q Consensus 204 ~-p~~~l~~~~n~l~ml~~--~~~~~~~~l~~~Lvl~ADHeg~n~St~aaRv~aSt~ad~y~avaAgl~al~GplHGGA~ 280 (440)
. |++++||++||++||++ |++.+.++||++|||||||| +|+||||+|+++||++|+|+||+|||++|+||+|||||
T Consensus 151 ~p~~~~ls~a~Nfl~ml~g~~p~~~~~~~l~~~LvL~ADH~-~naST~aaRvvaSt~ad~~sav~agi~aL~GplHGGA~ 229 (378)
T PRK12351 151 EVETDDDSIGGHFLHLLHGKKPSESWVKAMHTSLILYAEHE-FNASTFTARVIAGTGSDMYSAITGAIGALRGPKHGGAN 229 (378)
T ss_pred CCCCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccC-CchHHHHHHHHhccCCCHHHHHHHHHHhccCCccCchH
Confidence 4 57789999999999976 88999999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHH
Q 013583 281 QEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFE 357 (440)
Q Consensus 281 ~~~~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~~~~ipGfGH~vy~~~DPRa~~L~~~a~~~~---~~~~~~~~a~~le~ 357 (440)
++|++||+++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. ++++++++++++|+
T Consensus 230 e~v~~ml~~i----~---~~~~~~~~v~~~l~~~~~l~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~ie~ 302 (378)
T PRK12351 230 EVAFEIQQRY----D---TPDEAEADIRRRVENKEVVIGFGHPVYTISDPRNKVIKEVAKKLSKEAGDTKLYDIAERLET 302 (378)
T ss_pred HHHHHHHHHh----C---CHHHHHHHHHHHHhCCCccccCCCCCCCCCCccHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9999999886 4 568999999999999999999999999999999999999999863 56789999999999
Q ss_pred hhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhhhHHHhHHHHHHcCCCccCCCccchhHHHHHh
Q 013583 358 VVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKNC 436 (440)
Q Consensus 358 ~~~~~~~~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~Gw~AH~~Eq~~~~~~i~RP~~~~~~~~~~~~ 436 (440)
++.+ .|+++||||||+|++++.||||+ ++||++|++||++||+||++||++++ +|+||++.|+|...+.|
T Consensus 303 ~~~~-------~k~l~pNvD~ysg~l~~~lG~p~-~~~t~lF~~sR~~Gw~AH~~Eq~~~~-~~iRP~~~Y~G~~~~~~ 372 (378)
T PRK12351 303 VMWE-------EKKMFPNLDWFSAVSYHMMGVPT-AMFTPLFVISRTTGWAAHVIEQRQDN-KIIRPSANYTGPEDRKF 372 (378)
T ss_pred HHHH-------HhCCCCChHHHHHHHHHHcCCCH-HhhhhHHHHHHHHHHHHHHHHHHhcC-CccCCcceecCCCCCCC
Confidence 8754 36999999999999999999996 99999999999999999999999988 48899999999865544
No 15
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate, but has a partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate, prefer PrCoA as substrate, but can also can use AcCoA. Re 2-MCS1 at a low rate can use butyryl-CoA and valeryl-CoA. A second Ralstonia eu
Probab=100.00 E-value=1.6e-97 Score=756.72 Aligned_cols=355 Identities=25% Similarity=0.355 Sum_probs=324.5
Q ss_pred ccccccccccccceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCH
Q 013583 47 GMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPD 125 (440)
Q Consensus 47 Gl~g~~~~~t~is~iD~~~G-i~YRGy~I~eL~~~~~~~~~~~~~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~~lp~ 125 (440)
||+||.+.+|+||+||+++| ++||||+|+||++++ +||||+||||+|+|||++|+++|+++|..++.+|+
T Consensus 2 GL~gv~~~~T~is~v~~~~g~L~YRGy~i~dLa~~~---------~FEeva~LL~~G~lPt~~el~~f~~~L~~~~~lp~ 72 (366)
T cd06117 2 ALSGVAAGNTALCTVGRSGNDLHYRGYDILDLAEKC---------EFEEVAHLLVHGKLPTKSELAAYKTKLKSLRGLPA 72 (366)
T ss_pred CCCCeeEecccCeeeecccCEEEECCccHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCH
Confidence 89999999999999999998 599999999999986 49999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccCC
Q 013583 126 YVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPK 205 (440)
Q Consensus 126 ~v~~~i~~lP~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~liA~~p~i~a~~y~~~~~~~~~~~p 205 (440)
.+.++|++||+++|||++|+++|++|++++++.. +...+...+++++|||++|+|+|++||++.+ ++++.|
T Consensus 73 ~v~~~i~~~p~~~hpm~~l~~~vs~l~~~~~~~~--------~~~~~~~~~~a~rlia~~p~i~a~~~r~~~~-~~~i~p 143 (366)
T cd06117 73 NVKTALEQLPAAAHPMDVMRTGVSVLGCVLPEKE--------DHPVSGARDIADRLMASLGSILLYWYHYSHN-GKRIEV 143 (366)
T ss_pred HHHHHHHhCCccCCHHHHHHHHHhhhcccCcccc--------cCChHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCccCC
Confidence 9999999999999999999999999998765521 1122456778999999999999999998765 456665
Q ss_pred -CCCCCHHHHHHhhhcC--CchHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCcChHHHHHHHHhhhcccccccchHH
Q 013583 206 -DDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 282 (440)
Q Consensus 206 -~~~l~~~~n~l~ml~~--~~~~~~~~l~~~Lvl~ADHeg~n~St~aaRv~aSt~ad~y~avaAgl~al~GplHGGA~~~ 282 (440)
++++||++||++||++ |++.+.++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+|||||++
T Consensus 144 ~~~~~s~a~Nfl~ml~g~~p~~~~~~~l~~~LvL~ADHg-~n~ST~aarv~aSt~ad~~sav~agi~aL~GplHGGA~e~ 222 (366)
T cd06117 144 ETDDDSIGGHFLHLLHGEKPSESWEKAMHISLILYAEHE-FNASTFTARVIAGTGSDMYSAITGAIGALRGPKHGGANEV 222 (366)
T ss_pred CCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccC-CchHHHHHHHHHccCCcHHHHHHHHHHhccCCccCchHHH
Confidence 6689999999999976 89999999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHhh
Q 013583 283 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVV 359 (440)
Q Consensus 283 ~~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~~~~ipGfGH~vy~~~DPRa~~L~~~a~~~~---~~~~~~~~a~~le~~~ 359 (440)
|++||.++ + ++++++++|++.+++|++||||||||||..|||+++|+++++++. +.++++++++++|+++
T Consensus 223 v~~~l~~i----~---~~~~~~~~i~~~~~~~~~i~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~~~~ie~~~ 295 (366)
T cd06117 223 AFEIQQRY----E---SADEAEADIRRRVENKEVVIGFGHPVYTIADPRNQVIKEVAKQLSKEGGDMKMFDIAERLETVM 295 (366)
T ss_pred HHHHHHHh----C---CHHHHHHHHHHHHhcCCcccCCCCCCCCCCCchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999876 4 468999999999999999999999999999999999999999874 4578999999999987
Q ss_pred hhhHhhcCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhhhHHHhHHHHHHcCCCccCCCccchhHHHHHh
Q 013583 360 PPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKNC 436 (440)
Q Consensus 360 ~~~~~~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~Gw~AH~~Eq~~~~~~i~RP~~~~~~~~~~~~ 436 (440)
.+ .|++|||||||+|++++.||||+ ++||++|++||++||+||++||++++ +|+||++.|+|...+.|
T Consensus 296 ~~-------~k~l~pNvD~~s~~l~~~lG~p~-~~~t~lf~isR~~Gw~AH~~Eq~~~~-~~~RP~~~Y~G~~~~~~ 363 (366)
T cd06117 296 WE-------EKKMFPNLDWFSAVSYHMMGVPT-AMFTPLFVIARTTGWSAHIIEQRQDG-KIIRPSANYTGPEDLKF 363 (366)
T ss_pred HH-------HhCCCcCcHHHHHHHHHHcCcCh-hhhhHHHHHHHHHHHHHHHHHHHhcC-CCccccceecCCCCCCC
Confidence 54 46899999999999999999996 99999999999999999999999987 58899999999765543
No 16
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate though it has partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate and prefer PrCoA as substrate, but can also use AcCoA. Re 2-MCS1 can use butyryl-CoA and valeryl-CoA at a lower rate. A second Ralstonia eutropha 2MC
Probab=100.00 E-value=1.5e-97 Score=755.52 Aligned_cols=353 Identities=26% Similarity=0.400 Sum_probs=323.7
Q ss_pred cccccccccccccceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCC
Q 013583 46 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 124 (440)
Q Consensus 46 ~Gl~g~~~~~t~is~iD~~~G-i~YRGy~I~eL~~~~~~~~~~~~~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~~lp 124 (440)
+||+||++++|+||+||+++| ++||||+|+||+++. +||||+||||+|+|||++|+++|+++|..++.+|
T Consensus 1 ~GL~gv~~~~t~is~id~~~g~L~yRGy~i~dLa~~~---------sfeeva~LLl~G~lPt~~el~~f~~~L~~~~~lp 71 (363)
T cd06108 1 GGLAGVVAGQTAISTVGKGGKGLTYRGYDIEDLAENA---------TFEEVAYLLLYGKLPTRKQLDAYKTKLVALRRLP 71 (363)
T ss_pred CCCCCCeeeeeeCceEeCCCCEEEECCccHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 599999999999999999997 699999999999975 5999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCccc-
Q 013583 125 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKII- 203 (440)
Q Consensus 125 ~~v~~~i~~lP~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~liA~~p~i~a~~y~~~~~~~~~~- 203 (440)
+.+.+++++||+++|||++|+++|++|+++++.. . -+..++++++|||++|+|+|++||++.++ .++
T Consensus 72 ~~v~~~i~~~p~~~hpm~~L~~~vs~l~~~d~~~--------~---~~~~~~~a~rlia~~p~i~a~~~r~~~~~-~~~~ 139 (363)
T cd06108 72 AALKTVLELIPKDSHPMDVMRTGCSMLGCLEPEN--------E---FSQQYEIAIRLLAIFPSILLYWYHYSHSG-KRIE 139 (363)
T ss_pred HHHHHHHHhCCCCCChHHHHHHHHHhhhhcCCcc--------c---cHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CccC
Confidence 9999999999999999999999999998765331 0 03356789999999999999999988764 454
Q ss_pred CCCCCCCHHHHHHhhhcC--CchHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCcChHHHHHHHHhhhcccccccchH
Q 013583 204 PKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQ 281 (440)
Q Consensus 204 ~p~~~l~~~~n~l~ml~~--~~~~~~~~l~~~Lvl~ADHeg~n~St~aaRv~aSt~ad~y~avaAgl~al~GplHGGA~~ 281 (440)
+|++++||++||++||++ |++...++||++|||||||| +||||||+|+++||++|+|+||+||+++|+||+||||++
T Consensus 140 p~~~~~s~a~nfl~ml~g~~p~~~~~~~l~~~LvL~ADH~-~n~St~aaRv~aSt~ad~~sav~agi~al~GplHGGA~e 218 (363)
T cd06108 140 TETDEDSIAGHFLHLLHGKKPGELEIKAMDVSLILYAEHE-FNASTFAARVTASTLSDFYSAITGAIGTLRGPLHGGANE 218 (363)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhccCC-CcchHHHHHHHhccCCCHHHHHHHHHHhccCCcccchHH
Confidence 558889999999999976 78999999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhh---CCCChHHHHHHHHHHh
Q 013583 282 EVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKH---LPDDPLFQLVSKLFEV 358 (440)
Q Consensus 282 ~~~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~~~~ipGfGH~vy~~~DPRa~~L~~~a~~~---~~~~~~~~~a~~le~~ 358 (440)
+|++||+++ + +.+++++||++.+++|++||||||||||..|||+++|+++++++ .+++++++++.+++++
T Consensus 219 ~v~~~l~~i----~---~~~~~~~~v~~~l~~~~~i~GFGHrvyk~~DPRa~~L~~~a~~l~~~~~~~~~~~~a~~ie~~ 291 (363)
T cd06108 219 AAMELIERF----K---SPEEAEQGLLEKLERKELIMGFGHRVYKEGDPRSDIIKKWSKKLSEEGGDPLLYQISERIEEV 291 (363)
T ss_pred HHHHHHHHh----C---CHHHHHHHHHHHHhcCCeecCCCCCCCCCCCccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 999999887 4 46789999999999999999999999999999999999999876 3568999999999998
Q ss_pred hhhhHhhcCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhhhHHHhHHHHHHcCCCccCCCccchhHHHHHh
Q 013583 359 VPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKNC 436 (440)
Q Consensus 359 ~~~~~~~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~Gw~AH~~Eq~~~~~~i~RP~~~~~~~~~~~~ 436 (440)
+.+ .|+++||||||+|++++.||||+ ++||++|++||++||+||++||+..+ +++||++.|+|...+.|
T Consensus 292 ~~~-------~~~l~pNvD~~sa~l~~~lG~p~-~~~t~iF~i~R~~Gw~AH~~Eq~~~~-~~iRP~~~Y~G~~~~~~ 360 (363)
T cd06108 292 MWE-------EKKLFPNLDFYSASAYHFCGIPT-ELFTPIFVMSRVTGWAAHIMEQRANN-RLIRPSADYIGPEPRPF 360 (363)
T ss_pred HHH-------hcCCCcChHHHHHHHHHHcCCCh-hhhhhHHHHHHHHHHHHHHHHHHhcC-CCcCccceecCCCCCCC
Confidence 754 47999999999999999999996 99999999999999999999999987 58899999999765543
No 17
>PRK14036 citrate synthase; Provisional
Probab=100.00 E-value=2.1e-97 Score=758.44 Aligned_cols=361 Identities=27% Similarity=0.411 Sum_probs=332.4
Q ss_pred hccccccccccccccceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC
Q 013583 44 VIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT 122 (440)
Q Consensus 44 ~~~Gl~g~~~~~t~is~iD~~~Gi-~YRGy~I~eL~~~~~~~~~~~~~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~~ 122 (440)
+.+||+|+++++|+||+|||++|+ +||||+|+||+++. +||||+||||+|+|||++|++.|+.+|.+++.
T Consensus 4 ~~~Gl~gv~~~~t~Is~idg~~G~L~yRGy~i~dL~~~~---------~Feev~~LLl~G~lP~~~el~~f~~~L~~~~~ 74 (377)
T PRK14036 4 YRPGLEGVPATQSSISYVDGQKGILEYRGYPIEELAEKS---------SFLETAYLLIWGELPTAEELEEFEQEVRMHRR 74 (377)
T ss_pred CCCccCCCeeeeeeceEEECCCCEEEECCccHHHHHccC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Confidence 458999999999999999999996 89999999999986 59999999999999999999999999999999
Q ss_pred CCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcc
Q 013583 123 VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKI 202 (440)
Q Consensus 123 lp~~v~~~i~~lP~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~liA~~p~i~a~~y~~~~~~~~~ 202 (440)
+|+.+.++|++||+++|||++|+++|++|+.+++.. .....+..++++++|+|++|+|+|++||.+.+ .++
T Consensus 75 lp~~v~~~i~~~p~~~hpm~~L~~~vs~l~~~~~~~--------~~~~~~~~~~~~~rliA~~p~i~a~~~r~~~g-~~~ 145 (377)
T PRK14036 75 VKYRIRDMMKCFPETGHPMDALQASAAALGLFYSRR--------ALDDPEYIRDAVVRLIAKIPTMVAAFQLIRKG-NDP 145 (377)
T ss_pred CCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhcCccc--------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCC
Confidence 999999999999999999999999999998754331 11224677889999999999999999988755 458
Q ss_pred cCCCCCCCHHHHHHhhhcC--CchHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCcChHHHHHHHHhhhcccccccch
Q 013583 203 IPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLAN 280 (440)
Q Consensus 203 ~~p~~~l~~~~n~l~ml~~--~~~~~~~~l~~~Lvl~ADHeg~n~St~aaRv~aSt~ad~y~avaAgl~al~GplHGGA~ 280 (440)
++||+++||++||++||++ |++.+.++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+|||||
T Consensus 146 ~~p~~~l~~a~nfl~ml~g~~p~~~~~~~l~~~Lil~ADHg-~naST~aaRv~aSt~ad~ys~v~agi~aL~GplHGGA~ 224 (377)
T PRK14036 146 IQPRDDLDYAANFLYMLTEREPDPLAARIFDRCLILHAEHT-INASTFSARVTASTLTDPYAVIASAVGTLAGPLHGGAN 224 (377)
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhccCC-CCchHHHHHHHHhcCCcHHHHHHHHHHHccCccccChH
Confidence 8999999999999999986 89999999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHH
Q 013583 281 QEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFE 357 (440)
Q Consensus 281 ~~~~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~~~~ipGfGH~vy~~~DPRa~~L~~~a~~~~---~~~~~~~~a~~le~ 357 (440)
++|++||.++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. ++++++++++++|+
T Consensus 225 e~v~~ml~~i----~---~~~~~~~~v~~~~~~~~~i~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~~e~ 297 (377)
T PRK14036 225 EDVLAMLEEI----G---SVENVRPYLDERLANKQKIMGFGHREYKVKDPRATILQKLAEELFARFGHDEYYEIALELER 297 (377)
T ss_pred HHHHHHHHHh----C---ChhhHHHHHHHHHHCCCceecCCCCCCCCCCccHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 9999999886 4 568999999999999999999999999999999999999998863 57899999999999
Q ss_pred hhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhhhHHHhHHHHHHcCCCccCCCccchhHHHHHh
Q 013583 358 VVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKNC 436 (440)
Q Consensus 358 ~~~~~~~~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~Gw~AH~~Eq~~~~~~i~RP~~~~~~~~~~~~ 436 (440)
++.+.+ +.|+++||||||+|++++.||||+ ++||++|++||++||+||++||..++ +|+||++.|+|...+.|
T Consensus 298 ~~~~~~----~~k~l~pNvD~~sa~l~~~lGip~-~~~t~lf~~sR~~Gw~AH~~Eq~~~~-~l~RP~~~Y~G~~~~~~ 370 (377)
T PRK14036 298 VAEERL----GPKGIYPNVDFYSGLVYRKLGIPR-DLFTPIFAIARVAGWLAHWREQLGAN-RIFRPTQIYTGSHNRRY 370 (377)
T ss_pred HHHHHh----ccCCCCcChHHHHHHHHHHcCCCh-hhhhhHHHHHhHHHHHHHHHHHHhcC-cccCCCceecCCCCCCC
Confidence 987643 468999999999999999999996 99999999999999999999999987 69999999999876654
No 18
>PRK05614 gltA type II citrate synthase; Reviewed
Probab=100.00 E-value=2.6e-97 Score=765.56 Aligned_cols=372 Identities=25% Similarity=0.407 Sum_probs=332.3
Q ss_pred HHHHHHhhCCccccceehhhhccccccccccccccceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCcHHHHHHHHHhC
Q 013583 24 LKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTG 102 (440)
Q Consensus 24 ~~~l~~~~~~~~~~~~t~~~~~~Gl~g~~~~~t~is~iD~~~Gi-~YRGy~I~eL~~~~~~~~~~~~~~~Eev~~LLl~G 102 (440)
+++++++ .|.++ +.+||+|+++++|+||+|||++|+ +||||+|+||++++ +||||+||||+|
T Consensus 33 ~~~~~~~-----~~~~~---~~~Gl~~~~~~~S~Is~iDg~~G~L~YRGy~i~dLa~~~---------~feEva~LLl~G 95 (419)
T PRK05614 33 IRKLYGS-----TGYFT---YDPGFTSTASCESKITYIDGDKGILLYRGYPIEQLAEKS---------DFLEVCYLLLYG 95 (419)
T ss_pred hHhhhhc-----cCCcc---cCCccCCceeeeeeceeEeCCCCEEEECCccHHHHHhcC---------CHHHHHHHHHcC
Confidence 6677665 34444 458999999999999999999995 99999999999986 599999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCCchHHHHHHHH
Q 013583 103 KVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLI 182 (440)
Q Consensus 103 ~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~li 182 (440)
+|||++|+++|+++|.+++.+|+.+.++|++||+++|||++|+++|++|+.+++ +.....+ .+...+++++|+
T Consensus 96 ~LP~~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~~~------~~~~~~~-~~~~~~~a~rli 168 (419)
T PRK05614 96 ELPTAEQKAEFDTTVTRHTMVHEQLKRFFRGFRRDAHPMAVLCGVVGALSAFYH------DSLDIND-PEHREIAAIRLI 168 (419)
T ss_pred cCCCHHHHHHHHHhHhhccCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCc------cccCCCC-HHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987532 2212222 234567799999
Q ss_pred HhhHHHHHHHHHHHhcCCcccCCCCCCCHHHHHHhhhcC-------CchHHHHHHHHHHHHhcCCCCCCCchhHHHHHhh
Q 013583 183 ARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVAS 255 (440)
Q Consensus 183 A~~p~i~a~~y~~~~~~~~~~~p~~~l~~~~n~l~ml~~-------~~~~~~~~l~~~Lvl~ADHeg~n~St~aaRv~aS 255 (440)
|++|+|+|++||++.| .++++|++++||++||++|+.+ +++..+++||++|||||||| +|+||||+|+++|
T Consensus 169 a~~p~i~A~~~r~~~g-~~~~~p~~~ls~a~nfl~ml~g~~~~~~~~~~~~~~~ld~~LiL~ADH~-~n~STfa~RvvaS 246 (419)
T PRK05614 169 AKMPTLAAMAYKYSIG-QPFVYPRNDLSYAENFLRMMFATPCEEYEVNPVLVRALDRIFILHADHE-QNASTSTVRLAGS 246 (419)
T ss_pred HHHHHHHHHHHHHhCC-CCCCCCCCccCHHHHHHHHHhCCCCccCCCCHHHHHHHHHHHhhhccCC-CCcchHHHhhhhc
Confidence 9999999999998765 3588999999999999999954 47778999999999999998 9999999999999
Q ss_pred cCcChHHHHHHHHhhhcccccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh--CCCcccccCCCCCCCCCccHH
Q 013583 256 ALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLN--SGKVVPGFGHGVLRKTDPRYT 333 (440)
Q Consensus 256 t~ad~y~avaAgl~al~GplHGGA~~~~~~~l~~i~~~ig~~~~~~~~~~~v~~~l~--~~~~ipGfGH~vy~~~DPRa~ 333 (440)
|++|+|+||+|||++|+||+|||||++|++||+++ + +++++++||+++++ +|++||||||||||..|||++
T Consensus 247 t~adlysav~agi~aL~GplHGGA~e~v~~~l~~i----~---~~~~~~~~i~~~~~~~~~~~i~GFGHrvyk~~DPRa~ 319 (419)
T PRK05614 247 SGANPFACIAAGIAALWGPAHGGANEAVLKMLEEI----G---SVDNIPEFIARAKDKNDGFRLMGFGHRVYKNYDPRAK 319 (419)
T ss_pred cCCCHHHHHHHHHhhcCCCcccChHHHHHHHHHHh----C---CchhHHHHHHHHHhccCCccccCCCCCCCCCCCCCHH
Confidence 99999999999999999999999999999999887 4 45789999999976 456999999999999999999
Q ss_pred HHHHHHHhh---CC-CChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhhhHHH
Q 013583 334 CQREFALKH---LP-DDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICS 409 (440)
Q Consensus 334 ~L~~~a~~~---~~-~~~~~~~a~~le~~~~~~~~~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~Gw~A 409 (440)
+|+++++++ .+ +++++++++++|+++.+ .++++.|+++||||||+|++++.||||. ++||++|++||++||+|
T Consensus 320 ~l~~~a~~l~~~~~~~~~~~~ia~~ie~~~~~--~~~~~~r~l~pNvD~~s~~l~~~lG~p~-~~~t~lFa~~R~~Gw~A 396 (419)
T PRK05614 320 IMRETCHEVLKELGLNDPLLEVAMELEEIALN--DEYFIERKLYPNVDFYSGIILKALGIPT-SMFTVIFALARTVGWIA 396 (419)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh--hhhhccCCCCcChHHHHHHHHHHcCcCh-hhhcchHHhHhHHHHHH
Confidence 999999864 33 68899999999998765 5678889999999999999999999995 99999999999999999
Q ss_pred hHHHHHHc-CCCccCCCccchhH
Q 013583 410 QLIWDRAL-GLPLERPKSVTLDW 431 (440)
Q Consensus 410 H~~Eq~~~-~~~i~RP~~~~~~~ 431 (440)
|++||++. +.+|+||+++|+|+
T Consensus 397 H~~Eq~~~~~~~iiRPr~~Y~G~ 419 (419)
T PRK05614 397 HWNEMHSDPEQKIGRPRQLYTGY 419 (419)
T ss_pred HHHHHHhccCCcccCCCccccCC
Confidence 99999997 34699999999984
No 19
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, an
Probab=100.00 E-value=7.7e-97 Score=754.32 Aligned_cols=362 Identities=28% Similarity=0.433 Sum_probs=333.8
Q ss_pred ccccccccccccccceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCC
Q 013583 45 IGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 123 (440)
Q Consensus 45 ~~Gl~g~~~~~t~is~iD~~~Gi-~YRGy~I~eL~~~~~~~~~~~~~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~~l 123 (440)
.+||+|+++++|+||+|||++|+ +||||+|+||+++. +||||+||||+|+|||++|+++|+.+|.+++.+
T Consensus 2 ~~Gl~gv~~~~t~is~id~~~G~L~yRGy~i~dL~~~~---------~Feev~~LLl~G~lP~~~el~~~~~~L~~~~~l 72 (373)
T cd06112 2 IPGLAGVPAAESSISYIDGKNGILEYRGYDIEELAEYS---------SFEEVALLLLDGDLPTAAELEEFDKELRQHRRV 72 (373)
T ss_pred CCccCCCeeeeeeceEEeCCCCEEEECCccHHHHhcCC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence 47999999999999999999995 99999999999985 599999999999999999999999999999999
Q ss_pred CHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCccc
Q 013583 124 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKII 203 (440)
Q Consensus 124 p~~v~~~i~~lP~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~liA~~p~i~a~~y~~~~~~~~~~ 203 (440)
|+++.+++++||+++|||++|+++|++|++++++... .+ ++|+..++++++|+|++|+|+|++||++.|. +++
T Consensus 73 p~~v~~~i~~~p~~~hpm~~L~~~vs~l~~~~~~~~~-----~~-~~~~~~~~~a~~liA~~p~i~a~~~r~~~g~-~~~ 145 (373)
T cd06112 73 KYNIRDMMKCFPETGHPMDMLQATVAALGMFYPKPEV-----LK-PNPDYIDAATVKLIAKMPTLVAMWARIRNGD-DPI 145 (373)
T ss_pred CHHHHHHHHhCCCCCCHHHHHHHHHHhhhccCccccc-----cc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCc
Confidence 9999999999999999999999999999987765311 11 3578889999999999999999999887654 588
Q ss_pred CCCCCCCHHHHHHhhhcC--CchHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCcChHHHHHHHHhhhcccccccchH
Q 013583 204 PKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQ 281 (440)
Q Consensus 204 ~p~~~l~~~~n~l~ml~~--~~~~~~~~l~~~Lvl~ADHeg~n~St~aaRv~aSt~ad~y~avaAgl~al~GplHGGA~~ 281 (440)
.|++++||++||++||++ |++..+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+||||++
T Consensus 146 ~p~~~ls~~~nfl~ml~g~~p~~~~~~~l~~~Lil~aDHg-~n~STfaaRvvaSt~ad~~s~~~aai~al~GplHGGA~e 224 (373)
T cd06112 146 EPRPDLDYAENFLYMLFGEEPDPATAKILDACLILHAEHT-MNASTFSALVTGSTLADPYAVISSAIGTLSGPLHGGANE 224 (373)
T ss_pred CCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCC-CCchHHHHHHHHhcCCcHHHHHHHHHHhccCccccchHH
Confidence 999999999999999976 78999999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhCC----CChHHHHHHHHHH
Q 013583 282 EVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLP----DDPLFQLVSKLFE 357 (440)
Q Consensus 282 ~~~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~~~~ipGfGH~vy~~~DPRa~~L~~~a~~~~~----~~~~~~~a~~le~ 357 (440)
+|++||+++ + +++++++||++.+++|++||||||||||..|||+++|+++++++.. .++++++++++|+
T Consensus 225 ~~~~~l~~i----~---~~~~~~~~v~~~l~~~~~i~GfGH~vyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~i~~~~e~ 297 (373)
T cd06112 225 DVLEMLEEI----G---SPENVKAYLDKKLANKQKIWGFGHRVYKTKDPRATILQKLAEDLFAKMGELSKLYEIALEVER 297 (373)
T ss_pred HHHHHHHHh----C---CHHHHHHHHHHHHhcCCeeeCCCCccCCCCCcHHHHHHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence 999999886 4 5689999999999999999999999999999999999999998853 4789999999999
Q ss_pred hhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhhhHHHhHHHHHHcCCCccCCCccchhHHHHHh
Q 013583 358 VVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKNC 436 (440)
Q Consensus 358 ~~~~~~~~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~Gw~AH~~Eq~~~~~~i~RP~~~~~~~~~~~~ 436 (440)
++.+. ++.|+++||||||+|++++.||||+ ++||++|++||++||+||++||++++ +|+||++.|+|...+.|
T Consensus 298 ~~~~~----~~~k~l~pNvd~~s~~l~~~lG~p~-~~~t~lF~isR~~Gw~AH~~Eq~~~~-~l~RP~~~YvG~~~~~~ 370 (373)
T cd06112 298 LCEEL----LGHKGVYPNVDFYSGIVYKELGIPA-DLFTPIFAVARVAGWLAHWKEQLGDN-RIFRPTQIYIGEIDRKY 370 (373)
T ss_pred HHHHH----hCcCCCCcChHHHHHHHHHHhCcCh-HhhchHHHHHhHHHHHHHHHHHHhcc-CccCCCceecCCCCCCC
Confidence 88653 4568999999999999999999995 99999999999999999999999987 59999999999865544
No 20
>PRK14035 citrate synthase; Provisional
Probab=100.00 E-value=1.1e-96 Score=751.02 Aligned_cols=357 Identities=25% Similarity=0.356 Sum_probs=329.5
Q ss_pred hccccccccccccccceecCCCCeeecCCCHHHHhhhCCCCCCCCCCcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCC
Q 013583 44 VIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 123 (440)
Q Consensus 44 ~~~Gl~g~~~~~t~is~iD~~~Gi~YRGy~I~eL~~~~~~~~~~~~~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~~l 123 (440)
..+||+|+.+++|+||+||++ +++||||+|+||+++. +||||+||||+|+|||++|+++|+.+|..++.+
T Consensus 3 ~~~Gl~~v~~~~s~Is~id~~-~L~YRGy~i~dLa~~~---------~Feeva~LLl~G~lP~~~el~~f~~~L~~~~~l 72 (371)
T PRK14035 3 LQRGLEGVIAAETKISSIIDS-QLTYAGYDIDDLAENA---------SFEEVIFLLWNYRLPTEEELAHLKGKLRKYMTL 72 (371)
T ss_pred CCCCCCCceEeeeeeeEecCC-EeEECCccHHHHHhcC---------CHHHHHHHHHCCcCCCHHHHHHHHHHHHHcCCC
Confidence 458999999999999999986 5999999999999985 599999999999999999999999999999999
Q ss_pred CHHHHHHHHcCC-CCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcc
Q 013583 124 PDYVYKAIDALP-VTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKI 202 (440)
Q Consensus 124 p~~v~~~i~~lP-~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~liA~~p~i~a~~y~~~~~~~~~ 202 (440)
|+.+.+++..+| +++|||++|+++|++|++++++. .+.+|+..++++++|+|++|+|+|++||++.| .++
T Consensus 73 p~~v~~~i~~~~~~~~hpm~~l~~~vs~l~~~~~~~--------~~~~~~~~~~~a~rliA~~p~i~A~~~r~~~g-~~~ 143 (371)
T PRK14035 73 NDRVYQHFEEYSTDHVHPMTALRTSVSYLAHFDPDA--------EEESDEARYERAIRIQAKVASLVTAFARVRQG-KEP 143 (371)
T ss_pred CHHHHHHHHhcCCcCCCHHHHHHHHHHHHhccCccc--------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCC
Confidence 999999999976 68999999999999999876542 12357888999999999999999999998754 358
Q ss_pred cCCCCCCCHHHHHHhhhcC--CchHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCcChHHHHHHHHhhhcccccccch
Q 013583 203 IPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLAN 280 (440)
Q Consensus 203 ~~p~~~l~~~~n~l~ml~~--~~~~~~~~l~~~Lvl~ADHeg~n~St~aaRv~aSt~ad~y~avaAgl~al~GplHGGA~ 280 (440)
++|++++||++||++||++ |++.++++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+|||||
T Consensus 144 ~~p~~~ls~~~nfl~ml~g~~p~~~~~~~l~~~LvL~ADHg-~naST~aaRv~aSt~ad~~sav~Agi~al~GplHGGA~ 222 (371)
T PRK14035 144 LKPRPDLSYAANFLYMLRGELPTDIEVEAFNKALVLHADHE-LNASTFTARCAVSSLSDMYSGVVAAVGSLKGPLHGGAN 222 (371)
T ss_pred CCCCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHhccCC-CCchHHHHHHHHhcCCcHHHHHHHHHHhccCccccChH
Confidence 8999999999999999976 78889999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHH
Q 013583 281 QEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFE 357 (440)
Q Consensus 281 ~~~~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~~~~ipGfGH~vy~~~DPRa~~L~~~a~~~~---~~~~~~~~a~~le~ 357 (440)
++|++||.++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. +.+++++++.++++
T Consensus 223 e~v~~~l~~i----~---~~~~~~~~v~~~~~~~~~l~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~ie~ 295 (371)
T PRK14035 223 ERVMDMLSEI----R---SIGDVDAYLDEKFANKEKIMGFGHRVYKDGDPRAKYLREMSRKITKGTGREELFEMSVKIEK 295 (371)
T ss_pred HHHHHHHHHh----C---ChHHHHHHHHHHHhcCCcccCCCCCCCCCCCccHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence 9999999887 4 468999999999999999999999999999999999999999874 56789999999999
Q ss_pred hhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhhhHHHhHHHHHHcCCCccCCCccchhHHHHHh
Q 013583 358 VVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKNC 436 (440)
Q Consensus 358 ~~~~~~~~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~Gw~AH~~Eq~~~~~~i~RP~~~~~~~~~~~~ 436 (440)
++.+ .|+++||||||+|++++.||||+ ++||++|++||++||+||++||+..+ +|+||+++|+|...+.|
T Consensus 296 ~~~~-------~k~l~pNvD~~s~~l~~~lG~p~-~~~t~lf~i~R~~Gw~AH~~Eq~~~~-~l~RP~~~Y~G~~~~~~ 365 (371)
T PRK14035 296 RMKE-------EKGLIPNVDFYSATVYHVMGIPH-DLFTPIFAVSRVAGWIAHILEQYKDN-RIMRPRAKYIGETNRKY 365 (371)
T ss_pred HHHH-------hcCCCCChHHHHHHHHHHcCCCh-HhhhhHHHHHhHHHHHHHHHHHHhcC-CccCCCccccCCCCCCC
Confidence 8754 47899999999999999999996 99999999999999999999999987 59999999999876655
No 21
>PRK14032 citrate synthase; Provisional
Probab=100.00 E-value=1.8e-96 Score=764.13 Aligned_cols=398 Identities=27% Similarity=0.387 Sum_probs=345.4
Q ss_pred HHHCHHHHHHHH-HHHHhhCCccccceehhhhccccc-----cccccccccceecCC----------CC-eeecCCCHHH
Q 013583 14 KEMIPEQQERLK-KVKSELGKAQLGNITVDMVIGGMR-----GMTGLLWETSLLDPD----------EG-IRFRGLSIPE 76 (440)
Q Consensus 14 ~~~i~~~~~~~~-~l~~~~~~~~~~~~t~~~~~~Gl~-----g~~~~~t~is~iD~~----------~G-i~YRGy~I~e 76 (440)
.+++|++++.+. ++.++|- +..||+ ||++.+|+||+||++ +| |+||||+|+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~-----------~~~GL~~~~~~gv~~~~t~is~v~~~~~~dg~~~~~~G~L~YRGy~I~d 77 (447)
T PRK14032 9 LSELCEKNNKIDPELYDKYD-----------VKRGLRNEDGTGVLVGLTNIGDVHGYEIDDGEKIPDEGKLYYRGYDIKD 77 (447)
T ss_pred HHHHHHHcCCcCHHHHHHhC-----------CCcccccCCCCCeEEeeeEEeeeeceeecCCcccCCCCceeECCccHHH
Confidence 345566666532 3334433 258999 999999999999984 47 6999999999
Q ss_pred HhhhCCCCCCCCCCcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCHH-HHHHHHcCCCCCChHHHHHHHHHHhcccc
Q 013583 77 CQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDY-VYKAIDALPVTAHPMTQFASGVMALQVQS 155 (440)
Q Consensus 77 L~~~~~~~~~~~~~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~~lp~~-v~~~i~~lP~~~hPM~~L~~~vs~L~~~~ 155 (440)
|++++||+ ++.+||||+||||+|+|||++|+++|+++|..++.+|+. +.+++.++| ++|||++|+++|++|++++
T Consensus 78 La~~~~~~---~~~~FeEv~~LLl~G~LPt~~el~~f~~~L~~~~~lp~~~v~~~i~~~p-~~hPM~~L~a~vsaL~~~~ 153 (447)
T PRK14032 78 LVNGFLKE---KRFGFEEVAYLLLFGELPTKEELAEFTELLGDYRELPDGFTRDMILKAP-SKDIMNSLARSVLALYSYD 153 (447)
T ss_pred HHhhcccc---cCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHhCC-CcCHHHHHHHHHHhhhhcC
Confidence 99998865 345799999999999999999999999999999999999 899999999 7999999999999999865
Q ss_pred hhHHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHH---h-cCCc-ccCCCCCCCHHHHHHhhhcC---CchHHH
Q 013583 156 EFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRI---Y-KDGK-IIPKDDSLDYGGNFSHMLGF---DDPKML 227 (440)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~a~~liA~~p~i~a~~y~~~---~-~~~~-~~~p~~~l~~~~n~l~ml~~---~~~~~~ 227 (440)
+.. .+.+|+..++++++|||++|+|+|++||.. + ++.. +++|++++||++||++||++ |++..+
T Consensus 154 ~~~--------~~~~~~~~~~~a~rLiA~~p~i~A~~yr~~~~~~~g~~~~~~~p~~~ls~a~nfl~ml~g~~~p~~~~~ 225 (447)
T PRK14032 154 DNP--------DDTSIDNVLRQSISLIARFPTLAVYAYQAYRHYHDGKSLYIHPPKPELSTAENILYMLRPDNKYTELEA 225 (447)
T ss_pred CCc--------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccCCCCCCCHHHHHHHHhccCCCCCHHHH
Confidence 431 124588899999999999999999999943 2 3221 35799999999999999975 678889
Q ss_pred HHHHHHHHHhcCCCCCCCchhHHHHHhhcCcChHHHHHHHHhhhcccccccchHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 013583 228 ELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYV 307 (440)
Q Consensus 228 ~~l~~~Lvl~ADHeg~n~St~aaRv~aSt~ad~y~avaAgl~al~GplHGGA~~~~~~~l~~i~~~ig~~~~~~~~~~~v 307 (440)
++||++||||||||++|+||||+|++|||++|+|+||+||+++|+||+|||||++|++||.++.+..++..+++++++|+
T Consensus 226 ~~ld~~LiL~ADHg~~naSTfaaRv~aSt~ad~ysavaagi~aL~GplHGGA~e~v~~~l~ei~~~~~~~~s~~~v~~~v 305 (447)
T PRK14032 226 RLLDLALVLHAEHGGGNNSTFTTRVVSSSGTDTYSAIAAAIGSLKGPKHGGANIKVMEMFEDIKENVKDWEDEDEIADYL 305 (447)
T ss_pred HHHHHHHHHHhccCCCchhHHHHHHHHccCCcHHHHHHHHHHhccCccccCHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Confidence 99999999999998789999999999999999999999999999999999999999999999975544444678999999
Q ss_pred HHHHh-----CCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHhhhhhHh-hcCCCCCCCCchhh
Q 013583 308 WKTLN-----SGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVVPPILT-KLGKVKNPWPNVDA 378 (440)
Q Consensus 308 ~~~l~-----~~~~ipGfGH~vy~~~DPRa~~L~~~a~~~~---~~~~~~~~a~~le~~~~~~~~-~~~~~~~l~pNvD~ 378 (440)
++.++ +|++||||||||||..|||+++|+++++++. +.+++++++.++|+++.+++. ++++.|+++|||||
T Consensus 306 ~~~l~~~~~~~~~ri~GFGHrvyk~~DPRa~~L~~~~~~l~~~~g~~~~~~~~~~~e~~~~~~~~~~~~~~k~l~pNVDf 385 (447)
T PRK14032 306 TKILNKEAFDKSGLIYGMGHAVYTISDPRAVILKKFAEKLAKEKGREEEFNLYEKIEKLAPELIAEERGIYKGVSANVDF 385 (447)
T ss_pred HHHHhccccccCCcccCCCCCCCCCCCccHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhccCCCCCcChhh
Confidence 99887 5699999999999999999999999998874 456789999999998876543 34678999999999
Q ss_pred hHHHHHhccCCCcccchhhHHhhhhhhhHHHhHHHHHHcCCCccCCCccchhHHHHHh
Q 013583 379 HSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKNC 436 (440)
Q Consensus 379 ~~a~l~~~lGlp~~~~~t~lF~isR~~Gw~AH~~Eq~~~~~~i~RP~~~~~~~~~~~~ 436 (440)
|+|++++.||||+ ++||++|++||++||+||++||+..+.+|+||+++|+|. .+.|
T Consensus 386 ysa~i~~~lGip~-~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~YvG~-~~~~ 441 (447)
T PRK14032 386 YSGFVYDMLGIPE-ELYTPLFAIARIVGWSAHRIEELVNGGKIIRPAYKSVLE-RREY 441 (447)
T ss_pred HHHHHHHHcCCCh-hhhhhhHHHHhHHHHHHHHHHHHhcCCceecccceeeCC-CCCC
Confidence 9999999999996 999999999999999999999995555799999999998 5544
No 22
>PRK14034 citrate synthase; Provisional
Probab=100.00 E-value=1.2e-95 Score=743.62 Aligned_cols=357 Identities=25% Similarity=0.395 Sum_probs=326.9
Q ss_pred hccccccccccccccceecCCCCeeecCCCHHHHhhhCCCCCCCCCCcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCC
Q 013583 44 VIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 123 (440)
Q Consensus 44 ~~~Gl~g~~~~~t~is~iD~~~Gi~YRGy~I~eL~~~~~~~~~~~~~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~~l 123 (440)
+.+||+|+.+.+|.||+||++ +++||||+|+||+++. +||||+||||||+|||++|+++|+++|..++.+
T Consensus 3 ~~~GL~gv~~~~s~is~i~~~-~L~YRGy~i~dLa~~~---------~fEeva~LLl~G~lPt~~el~~f~~~L~~~~~l 72 (372)
T PRK14034 3 VTRGLEGVVATTSSVSSIIDD-TLTYVGYNIDDLAENA---------SFEEVVYLLWHRKLPNKQELAEFKEQLSENAKV 72 (372)
T ss_pred CCCCCCCceEeeeEeeccCCC-eEEECCccHHHHhccC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcCC
Confidence 458999999999999999964 6999999999999975 599999999999999999999999999999999
Q ss_pred CHHHHHHHHcCCC-CCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcc
Q 013583 124 PDYVYKAIDALPV-TAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKI 202 (440)
Q Consensus 124 p~~v~~~i~~lP~-~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~liA~~p~i~a~~y~~~~~~~~~ 202 (440)
|+.+.+++++||+ ++|||++|+++|++|+.++++. ++...+..++++++|+|++|+|+|++||+..+ .++
T Consensus 73 p~~v~~~l~~~p~~~~hpm~~l~~~vs~l~~~~~~~--------~~~~~~~~~~~a~~liA~~p~i~a~~~r~~~g-~~~ 143 (372)
T PRK14034 73 PGEIIEHLKQYDLKKVHPMSVLRTAISMLGLYDEEA--------EIMDEEANYRKAVRLQAKVPTIVAAFSRIRKG-LDP 143 (372)
T ss_pred CHHHHHHHHhCCCcCcCHHHHHHHHHHhhcccCccc--------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCC
Confidence 9999999999997 5999999999999999876542 11223567889999999999999999987755 458
Q ss_pred cCCCCCCCHHHHHHhhhcC--CchHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCcChHHHHHHHHhhhcccccccch
Q 013583 203 IPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLAN 280 (440)
Q Consensus 203 ~~p~~~l~~~~n~l~ml~~--~~~~~~~~l~~~Lvl~ADHeg~n~St~aaRv~aSt~ad~y~avaAgl~al~GplHGGA~ 280 (440)
++|++++||++||++|+++ |++.++++||++|||||||| +||||||+|+++||++|+|+|++||+++|+||+||||+
T Consensus 144 ~~p~~~ls~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~aDHg-~n~ST~aaRv~aSt~~d~ysav~agi~al~GplHGGA~ 222 (372)
T PRK14034 144 VEPRKDLSLAANFLYMLNGEEPDEVEVEAFNKALVLHADHE-LNASTFTARVCVATLSDVYSGITAAIGALKGPLHGGAN 222 (372)
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhHhccCC-CCccHHHHHHHhccCCcHHHHHHHHhcccCCCccCCHH
Confidence 8999999999999999976 78889999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHH
Q 013583 281 QEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFE 357 (440)
Q Consensus 281 ~~~~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~~~~ipGfGH~vy~~~DPRa~~L~~~a~~~~---~~~~~~~~a~~le~ 357 (440)
++|++||+++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. +.++++++++++++
T Consensus 223 e~~~~~l~~i----~---~~~~~~~~v~~~~~~~~~l~GFGHrvyk~~DPRa~~L~~~~~~~~~~~~~~~~~~~a~~~e~ 295 (372)
T PRK14034 223 ENVMKMLTEI----G---EEENVESYIHNKLQNKEKIMGFGHRVYRQGDPRAKHLREMSKRLTVLLGEEKWYNMSIKIEE 295 (372)
T ss_pred HHHHHHHHHh----C---CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9999999887 4 468999999999999999999999999999999999999999874 56799999999998
Q ss_pred hhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhhhHHHhHHHHHHcCCCccCCCccchhHHHHHh
Q 013583 358 VVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKNC 436 (440)
Q Consensus 358 ~~~~~~~~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~Gw~AH~~Eq~~~~~~i~RP~~~~~~~~~~~~ 436 (440)
++.+ .|+++||||||+|++++.||||+ ++||++|++||++||+||++||+.++ +|+||++.|+|.-.+.|
T Consensus 296 ~~~~-------~k~l~pNvD~~~a~l~~~lG~p~-~~~t~lf~i~R~~Gw~AH~~Eq~~~~-~l~Rp~~~Y~G~~~~~~ 365 (372)
T PRK14034 296 IVTK-------EKGLPPNVDFYSASVYHCLGIDH-DLFTPIFAISRMSGWLAHILEQYENN-RLIRPRADYVGPTHQVY 365 (372)
T ss_pred HHHH-------cCCCCCChHHHHHHHHHHcCCCh-HhccchhHHHhHHHHHHHHHHHHhcC-CccCCCceecCCCCCCC
Confidence 8753 47899999999999999999996 99999999999999999999999986 69999999999754443
No 23
>PRK14037 citrate synthase; Provisional
Probab=100.00 E-value=4.2e-95 Score=741.46 Aligned_cols=359 Identities=25% Similarity=0.378 Sum_probs=326.5
Q ss_pred hccccccccccccccceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC
Q 013583 44 VIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT 122 (440)
Q Consensus 44 ~~~Gl~g~~~~~t~is~iD~~~Gi-~YRGy~I~eL~~~~~~~~~~~~~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~~ 122 (440)
+.+||+||++.+|+||+||+++|+ +||||+|+||+++. +||||+||||+|+|||++|+++|+++|..++.
T Consensus 4 ~~~GL~gv~~~~t~is~id~~~g~L~yRGy~i~dL~~~~---------~Feev~~LLl~G~lP~~~e~~~f~~~L~~~~~ 74 (377)
T PRK14037 4 ISKGLENVIIKVTNLTFIDGEKGILRYRGYNIEDLVNYG---------SYEETIYLMLYGELPTKKELNDLKEKLNEEYE 74 (377)
T ss_pred CCCCCCCCeeeeeeceEEeCCCCEEEECCccHHHHHccC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 569999999999999999999995 99999999999986 59999999999999999999999999999999
Q ss_pred CCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCC-CchHHHHHHHHHhhHHHHHHHHHHHhcCCc
Q 013583 123 VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYW-EPTYEDSLNLIARVPVVAAYVYQRIYKDGK 201 (440)
Q Consensus 123 lp~~v~~~i~~lP~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~liA~~p~i~a~~y~~~~~~~~ 201 (440)
+|+.+++++++||+++|||++|+++|++|+++++. .+| +..++++++|||++|+|+|++||++.|. +
T Consensus 75 lp~~v~~~~~~~p~~~hpm~~l~~~vs~l~~~~~~-----------~~~~~~~~~~a~~liA~~p~i~a~~yr~~~g~-~ 142 (377)
T PRK14037 75 VPQEVIDSIYLMPRDSDAIGLMEAAFAALASIDKN-----------FKWKENDKEKAISIIAKMATIVANVYRRKEGN-K 142 (377)
T ss_pred CCHHHHHHHHhCCccCCcHHHHHHHHHhhhccCCc-----------ccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC-C
Confidence 99999999999999999999999999999975321 112 3457889999999999999999998664 5
Q ss_pred ccCCCCCCCHHHHHHhhhcC--CchHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCcChHHHHHHHHhhhcccccccc
Q 013583 202 IIPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLA 279 (440)
Q Consensus 202 ~~~p~~~l~~~~n~l~ml~~--~~~~~~~~l~~~Lvl~ADHeg~n~St~aaRv~aSt~ad~y~avaAgl~al~GplHGGA 279 (440)
+++|++++||++||++||.+ |++.++++||++|||||||| +|+||||+|+++||++|+|+||+|||++|+||+||||
T Consensus 143 ~~~p~~~~s~a~nfl~ml~G~~p~~~~~~~l~~~Lil~ADHg-~naST~aarv~aSt~ad~ysav~agi~al~GplHGGA 221 (377)
T PRK14037 143 PRIPEPSDSFAESFLLASFAREPTAEEIKAMDAALILYTDHE-VPASTTAALVAASTLSDMYSCITAALAALKGPLHGGA 221 (377)
T ss_pred CCCCCCCCCHHHHHHHHHhccCCcHHHHHHHHHHHhHhcccC-CchHhHHHHHhhccCCCHHHHHHHHHHhccCcccCCh
Confidence 78999999999999999975 89999999999999999998 9999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-CCCcccccCCCCCCCCCccHHHHHHHHHhhC---C-CChHHHHHHH
Q 013583 280 NQEVLLWIKSVVDECGENVTTEQLKDYVWKTLN-SGKVVPGFGHGVLRKTDPRYTCQREFALKHL---P-DDPLFQLVSK 354 (440)
Q Consensus 280 ~~~~~~~l~~i~~~ig~~~~~~~~~~~v~~~l~-~~~~ipGfGH~vy~~~DPRa~~L~~~a~~~~---~-~~~~~~~a~~ 354 (440)
|++|++||+++ + +++++++|+++.+. +|++||||||||||..|||+++|+++++++. + .+++++++.+
T Consensus 222 ~e~v~~~l~ei----~---~~~~~~~~~~~~~~~~~~~i~GFGHrvyk~~DPRa~~L~~~~~~~~~~~~~~~~~~~ia~~ 294 (377)
T PRK14037 222 AEEAFKQFVEI----G---DPNNVEMWFNDKIINGKKRLMGFGHRVYKTYDPRAKIFKELAETLIERNSEAKKYFEIAQK 294 (377)
T ss_pred HHHHHHHHHHh----c---ChhhHHHHHHHHHhcCCCeecCCCCCCCCCCCccHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 99999999886 4 46899999987664 5589999999999999999999999999874 3 3689999999
Q ss_pred HHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhhhHHHhHHHHHHcCCCccCCCccchhHHHH
Q 013583 355 LFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEK 434 (440)
Q Consensus 355 le~~~~~~~~~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~Gw~AH~~Eq~~~~~~i~RP~~~~~~~~~~ 434 (440)
+|+++.+. ++.|+++||||||+|++++.||||+ ++||++|++||++||+||++||+.++.+|+||+++|+|...+
T Consensus 295 ~e~~~~~~----~~~k~l~pNvD~~sa~l~~~lG~p~-~~~t~lf~isR~~Gw~AH~~Eq~~~~~~~~RP~~~Y~G~~~~ 369 (377)
T PRK14037 295 LEELGIKQ----FGSKGIYPNTDFYSGIVFYALGFPV-YMFTALFALSRTLGWLAHIIEYVEEQHRLIRPRALYVGPEHR 369 (377)
T ss_pred HHHHHHHH----hhccCCCCChHHHHHHHHHHcCCCh-hhcchhHHhhhhhHHHHHHHHHHhcCCccccCcceecCCCCC
Confidence 99987543 4568999999999999999999996 999999999999999999999998766799999999997655
Q ss_pred Hh
Q 013583 435 NC 436 (440)
Q Consensus 435 ~~ 436 (440)
.|
T Consensus 370 ~~ 371 (377)
T PRK14037 370 EY 371 (377)
T ss_pred CC
Confidence 44
No 24
>cd06114 EcCS_like Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). Some typ
Probab=100.00 E-value=9.8e-95 Score=743.80 Aligned_cols=359 Identities=28% Similarity=0.423 Sum_probs=327.0
Q ss_pred hccccccccccccccceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC
Q 013583 44 VIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT 122 (440)
Q Consensus 44 ~~~Gl~g~~~~~t~is~iD~~~Gi-~YRGy~I~eL~~~~~~~~~~~~~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~~ 122 (440)
+.+||+|+++++|+||+||+++|+ +||||+|+||+++. +||||+||||+|+||+++|+++|+.+|..++.
T Consensus 27 ~~~GL~gv~v~~S~Is~idg~~G~L~YRGy~i~dLa~~~---------sfEEva~LL~~G~lP~~~el~~f~~~L~~~~~ 97 (400)
T cd06114 27 YDPGFMNTASCESAITYIDGEKGILRYRGYPIEQLAEKS---------SFLEVCYLLLYGELPTAEQLQEFREEITRHTL 97 (400)
T ss_pred CCCCCCCceeEeeeCeEEeCCCCEEEECCccHHHHHhcC---------CHHHHHHHHHcCcCCCHHHHHHHHHHHHHccC
Confidence 468999999999999999999995 99999999999985 59999999999999999999999999999999
Q ss_pred CCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcc
Q 013583 123 VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKI 202 (440)
Q Consensus 123 lp~~v~~~i~~lP~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~liA~~p~i~a~~y~~~~~~~~~ 202 (440)
+|+.+.++|+++|+++|||++|+++|++|+.+++. .... ..|+...+++++|||++|+|+|++||++.|. ++
T Consensus 98 lp~~v~~~i~~~p~~~~pm~~l~~~vs~l~~~d~~------~~~~-~~~~~~~~~a~~lia~~p~i~a~~~r~~~g~-~~ 169 (400)
T cd06114 98 VHEQMKRFFNGFPRDAHPMAILSAMVNALSAFYPD------SLDV-NDPEQRELAAIRLIAKVPTIAAMAYRYSIGQ-PF 169 (400)
T ss_pred CCHHHHHHHHhcccCCCHHHHHHHHHHHHhhcCcc------cccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CC
Confidence 99999999999999999999999999999975432 1111 2467788899999999999999999988653 47
Q ss_pred cCCCCCCCHHHHHHhhhcC-------CchHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCcChHHHHHHHHhhhcccc
Q 013583 203 IPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPL 275 (440)
Q Consensus 203 ~~p~~~l~~~~n~l~ml~~-------~~~~~~~~l~~~Lvl~ADHeg~n~St~aaRv~aSt~ad~y~avaAgl~al~Gpl 275 (440)
+.|++++||++||++|+++ |++..+++||++|||||||| +|+||||+|+++||++|+|+||+|||++|+||+
T Consensus 170 ~~p~~~ls~a~nfl~ml~g~~~~~~~p~~~~~~~l~~~LvL~aDH~-~n~STfaaRv~aSt~adl~sav~agl~al~Gpl 248 (400)
T cd06114 170 IYPDNDLSYVENFLHMMFAVPYEPYEVDPVVVKALDTILILHADHE-QNASTSTVRMVGSSGANLFASISAGIAALWGPL 248 (400)
T ss_pred CCCCCCcCHHHHHHHHhcCCCCccCCCCHHHHHHHHHHHeeeccCC-CcchHHHHHHHhccCCcHHHHHHHHHHhccCCc
Confidence 8999999999999999964 46888999999999999998 999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC--CcccccCCCCCCCCCccHHHHHHHHHhh---C-CCChHH
Q 013583 276 HGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSG--KVVPGFGHGVLRKTDPRYTCQREFALKH---L-PDDPLF 349 (440)
Q Consensus 276 HGGA~~~~~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~~--~~ipGfGH~vy~~~DPRa~~L~~~a~~~---~-~~~~~~ 349 (440)
||||++.|++||.++ + +++++++||++.+++| ++||||||||||..|||+++|+++++++ . .+++++
T Consensus 249 HGGA~~~v~~~l~~i----~---~~~~~~~~v~~~l~~~~~~~ipGfGH~vyk~~DPRa~~L~~~~~~l~~~~~~~~~~~ 321 (400)
T cd06114 249 HGGANEAVLEMLEEI----G---SVGNVDKYIAKAKDKNDPFRLMGFGHRVYKNYDPRAKILKKTCDEVLAELGKDDPLL 321 (400)
T ss_pred ccChHHHHHHHHHHh----c---CcccHHHHHHHHHhcCCCccccCCCCCCCCCCCccHHHHHHHHHHHHHHhCCCcHHH
Confidence 999999999999887 4 3478999999999987 5999999999999999999999998775 2 347899
Q ss_pred HHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhhhHHHhHHHHHHcC-CCccCCCccc
Q 013583 350 QLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALG-LPLERPKSVT 428 (440)
Q Consensus 350 ~~a~~le~~~~~~~~~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~Gw~AH~~Eq~~~~-~~i~RP~~~~ 428 (440)
++++++|+++.+ .++++.|+++||||||+|++++.||||+ ++||++|++||++||+||++||++++ .+|+||++.|
T Consensus 322 ~~~~~ie~~~~~--~~~~~~~~l~pNvD~~~a~l~~~lG~p~-~~~~~lFa~sR~~Gw~AH~~Eq~~~~~~~liRP~~~Y 398 (400)
T cd06114 322 EIAMELEEIALK--DDYFIERKLYPNVDFYSGIILRALGIPT-EMFTVLFALGRTPGWIAQWREMHEDPELKIGRPRQLY 398 (400)
T ss_pred HHHHHHHHHHHH--hhhhcccCCCCChHHHHHHHHHHcCCCh-HhhhhhHHHHhHHHHHHHHHHHHhCCCCceeCccccc
Confidence 999999997755 4566789999999999999999999996 99999999999999999999999974 4699999999
Q ss_pred hh
Q 013583 429 LD 430 (440)
Q Consensus 429 ~~ 430 (440)
+|
T Consensus 399 vG 400 (400)
T cd06114 399 TG 400 (400)
T ss_pred CC
Confidence 86
No 25
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) a carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) h
Probab=100.00 E-value=2.5e-94 Score=742.01 Aligned_cols=368 Identities=27% Similarity=0.395 Sum_probs=329.8
Q ss_pred ccccccccccee------cCC----CC-eeecCCCHHHHhhhCCCCCCCCCCcHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 013583 50 GMTGLLWETSLL------DPD----EG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELR 118 (440)
Q Consensus 50 g~~~~~t~is~i------D~~----~G-i~YRGy~I~eL~~~~~~~~~~~~~~~Eev~~LLl~G~LPt~~el~~f~~~L~ 118 (440)
||++.+|+||+| |++ +| |+||||+|+||++++||+ .+.+||||+||||+|+|||++|+++|+++|.
T Consensus 10 gv~~~~t~is~i~~~~~idg~~~~~~G~L~yRGy~I~dLa~~~p~~---~~~sFEev~yLLl~G~LPt~~el~~f~~~L~ 86 (406)
T cd06113 10 GVLAGLTNISDVVGYKIIDGEKVPCPGKLYYRGYDVEDLVNGAQKE---NRFGFEETAYLLLFGYLPNKEELEEFCEILS 86 (406)
T ss_pred ceEeecceeeeeeeeeecCCcccCCCCeeeECCCcHHHHHhhcccc---cCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 678999999999 899 88 599999999999998864 3457999999999999999999999999999
Q ss_pred hhcCCCHHH-HHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHh
Q 013583 119 DRATVPDYV-YKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIY 197 (440)
Q Consensus 119 ~~~~lp~~v-~~~i~~lP~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~liA~~p~i~a~~y~~~~ 197 (440)
.++.+|+.+ .+++.++|. .|||++|+++|++|+.+++. .++.+|+..++++++|||++|+|+|++||.+.
T Consensus 87 ~~~~lp~~~~~~~i~~~p~-~hpM~~L~a~v~~l~~~~~~--------~~~~~~~~~~~~a~rLiA~~p~i~A~~yr~~~ 157 (406)
T cd06113 87 SYRTLPDNFVEDVILKAPS-KDIMNKLQRSVLALYSYDDK--------PDDISLENVLRQSIQLIARLPTIAVYAYQAKR 157 (406)
T ss_pred HhcCCCHHHHHHHHHhCCC-cCHHHHHHHHHHhccccCCC--------cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999985 679999995 99999999999999986533 23456899999999999999999999999643
Q ss_pred ---cCC--cccCCCCCCCHHHHHHhhhcC---CchHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCcChHHHHHHHHh
Q 013583 198 ---KDG--KIIPKDDSLDYGGNFSHMLGF---DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALN 269 (440)
Q Consensus 198 ---~~~--~~~~p~~~l~~~~n~l~ml~~---~~~~~~~~l~~~Lvl~ADHeg~n~St~aaRv~aSt~ad~y~avaAgl~ 269 (440)
+++ .+++|++++||++||++||++ |++.++++||++||||||||++|+||||+|+++||++|+|+||+|||+
T Consensus 158 ~~~~~~~~~~~~p~~~ls~a~nfl~ml~g~~~p~~~~~~~l~~~Lvl~ADHg~~naST~aaRv~aSt~ad~~~avaagi~ 237 (406)
T cd06113 158 HYYDGESLYIHHPQPELSTAENILSMLRPDKKYTELEAKLLDLCLVLHAEHGGGNNSTFTTRVVSSSGTDTYSAIAAAIG 237 (406)
T ss_pred hhccCCCccccCCCCCCCHHHHHHHHhccCCCCCHHHHHHHHHHHhhhhccCCCcchHHHHHHHHccCCCHHHHHHHHHH
Confidence 122 255799999999999999975 678889999999999999987899999999999999999999999999
Q ss_pred hhcccccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC-----CcccccCCCCCCCCCccHHHHHHHHHhhC-
Q 013583 270 GLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSG-----KVVPGFGHGVLRKTDPRYTCQREFALKHL- 343 (440)
Q Consensus 270 al~GplHGGA~~~~~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~~-----~~ipGfGH~vy~~~DPRa~~L~~~a~~~~- 343 (440)
+|+||+||||+++|++||.++.+..++..+++++++||++.++++ ++||||||||||..|||+++|+++++++.
T Consensus 238 al~GplHGGA~e~v~~~l~~i~~~~~~~~~~~~v~~~v~~~l~~~~~~~~~~l~GFGHrvyk~~DPRa~~L~~~~~~l~~ 317 (406)
T cd06113 238 SLKGPRHGGANIKVMEMLEDIKENVKDWTDEDEVRAYLRKILNKEAFDKSGLIYGMGHAVYTLSDPRAVVLKKYARSLAK 317 (406)
T ss_pred HccCccccChHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhccccccCceeecCCCCCCCCCCccHHHHHHHHHHHHH
Confidence 999999999999999999999765555556889999999999876 59999999999999999999999998874
Q ss_pred --CCChHHHHHHHHHHhhhhhHhh-cCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhhhHHHhHHHHHHcCCC
Q 013583 344 --PDDPLFQLVSKLFEVVPPILTK-LGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLP 420 (440)
Q Consensus 344 --~~~~~~~~a~~le~~~~~~~~~-~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~Gw~AH~~Eq~~~~~~ 420 (440)
+.+++++++.++|+++.+++.+ +++.|+++||||||+|+++++||||+ ++||++|++||++||+||++||+.++.+
T Consensus 318 ~~~~~~~~~~~~~ie~~~~~~~~~~~~~~r~l~pNvD~~sa~l~~~lG~p~-~~~t~lF~isR~~Gw~AH~~Eq~~~~~~ 396 (406)
T cd06113 318 EKGREEEFALYERIERLAPEVIAEERGIGKTVCANVDFYSGFVYKMLGIPQ-ELYTPLFAVARIVGWCAHRIEELLNSGR 396 (406)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHcCCCh-hhhhhHHHHHhHHHHHHHHHHHHhcCCc
Confidence 4467999999999988776543 57889999999999999999999996 9999999999999999999999876557
Q ss_pred ccCCCccchh
Q 013583 421 LERPKSVTLD 430 (440)
Q Consensus 421 i~RP~~~~~~ 430 (440)
|+||++.|+|
T Consensus 397 l~RP~~~Y~G 406 (406)
T cd06113 397 IIRPAYKYVG 406 (406)
T ss_pred eeccccccCC
Confidence 9999999986
No 26
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. DsCS, compared with CS from the hyperthermophile Pyrococcus furiosus (not included in this group), has an increase in the size of surface loops, a higher proline content in the loop regions, a more accessible active site, and a highe
Probab=100.00 E-value=1.4e-92 Score=720.49 Aligned_cols=353 Identities=24% Similarity=0.350 Sum_probs=326.2
Q ss_pred cccccccccccccceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCC
Q 013583 46 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 124 (440)
Q Consensus 46 ~Gl~g~~~~~t~is~iD~~~G-i~YRGy~I~eL~~~~~~~~~~~~~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~~lp 124 (440)
+||+||++.+|+||++|+++| ++||||||+||+++. +||||+||||+|+||+++|++.|+.+|.+++.+|
T Consensus 1 ~Gl~gv~~~~s~Is~i~~~~g~L~yRG~di~dLa~~~---------~feeva~LL~~G~lP~~~e~~~f~~~l~~~~~lp 71 (362)
T cd06111 1 KGLAGVVADTTAISKVMPETNSLTYRGYPVQDLAENC---------SFEEVAYLLWNGELPNAAQLAEFSQRERSYRRLD 71 (362)
T ss_pred CCCCCceEecccceEEECCCCeEEECCccHHHHHccC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCCC
Confidence 599999999999999999987 699999999999986 4999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccC
Q 013583 125 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 204 (440)
Q Consensus 125 ~~v~~~i~~lP~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~liA~~p~i~a~~y~~~~~~~~~~~ 204 (440)
+.+.++++.||+++|||++|+++|++|+.+++.. .+.+|+...+++++|+|++|+|+|++||+..+. .+++
T Consensus 72 ~~~~~~~~~~p~~~~pm~~l~~~vs~l~~~d~~~--------~~~~~~~~~~~a~~lia~~~~i~a~~~~~~~g~-~~~~ 142 (362)
T cd06111 72 RNLLSLIASLPKNCHPMDVLRTAVSVLGAEDSET--------DDSSPDANLAKAIRLLAQLPTVVAADIRRRKGL-DPIP 142 (362)
T ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHhhccCccc--------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCcC
Confidence 9999999999999999999999999999876542 123578888999999999999999999988553 5889
Q ss_pred CCCCCCHHHHHHhhhcC--CchHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCcChHHHHHHHHhhhcccccccchHH
Q 013583 205 KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 282 (440)
Q Consensus 205 p~~~l~~~~n~l~ml~~--~~~~~~~~l~~~Lvl~ADHeg~n~St~aaRv~aSt~ad~y~avaAgl~al~GplHGGA~~~ 282 (440)
|+++++|++||++|+++ |++...++||++|||||||| +|+||||+|+++||++|+|+||+|||++|+||+||||+++
T Consensus 143 p~~~ls~a~nfl~m~~g~~p~~~~~~~l~~~Lvl~ADHg-~n~St~aaR~~aSt~ad~~~av~agl~aL~GplHGGA~~~ 221 (362)
T cd06111 143 PDSDLGIAENFLHMCFGEVPSPEVVRAFDVSLILYAEHS-FNASTFTARVITSTLSDIYSAITGAIGALKGPLHGGANEA 221 (362)
T ss_pred CCCCcCHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhccC-CchhHHHHHHHHccCCCHHHHHHHHHhhccCccccchHHH
Confidence 99999999999999965 68889999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHhh
Q 013583 283 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVV 359 (440)
Q Consensus 283 ~~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~~~~ipGfGH~vy~~~DPRa~~L~~~a~~~~---~~~~~~~~a~~le~~~ 359 (440)
|++||+++ + +++++++||++.+++|++|||||||+||..|||+++|+++++++. +.++++++++++++++
T Consensus 222 ~~~~l~ei----~---~~~~~~~~v~~~~~~~~~l~GFGH~vyk~~DPRa~~L~~~l~~l~~~~~~~~~~~~~~~i~~~~ 294 (362)
T cd06111 222 VMHMMLEI----D---DPEKAAQWMLDALARKEKVMGFGHRVYKSGDSRVPTMEKALRRVAAVHDGQKWLAMYDALEDAM 294 (362)
T ss_pred HHHHHHHh----C---ChhhHHHHHHHHHhcCCceecCCCCCCCCCCchHHHHHHHHHHHHhhcCccHHHHHHHHHHHHH
Confidence 99999886 4 457899999999999999999999999999999999999988763 3568999999999877
Q ss_pred hhhHhhcCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhhhHHHhHHHHHHcCCCccCCCccchhHHH
Q 013583 360 PPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIE 433 (440)
Q Consensus 360 ~~~~~~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~Gw~AH~~Eq~~~~~~i~RP~~~~~~~~~ 433 (440)
.+ .++++||||||+|++++.||||+ +++|++|++||++||+||++||++++ +|+||++.|+|.-.
T Consensus 295 ~~-------~~~l~pNvD~~~a~l~~~lG~p~-~~~~~lf~~~R~~Gw~AH~~Eq~~~~-~l~Rp~~~Y~G~~~ 359 (362)
T cd06111 295 VA-------AKGIKPNLDFPAGPAYYLMGFDI-DFFTPIFVMARITGWTAHIMEQRADN-ALIRPLSEYNGPEQ 359 (362)
T ss_pred HH-------hcCCCCChHHHHHHHHHHcCcCh-hhhhhHHHHHHHHHHHHHHHHHHHcC-CcccCCceeeCCCC
Confidence 54 36899999999999999999996 99999999999999999999999987 69999999999654
No 27
>PRK12349 citrate synthase 3; Provisional
Probab=100.00 E-value=3.6e-92 Score=719.02 Aligned_cols=354 Identities=27% Similarity=0.391 Sum_probs=324.0
Q ss_pred hccccccccccccccceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC
Q 013583 44 VIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT 122 (440)
Q Consensus 44 ~~~Gl~g~~~~~t~is~iD~~~G-i~YRGy~I~eL~~~~~~~~~~~~~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~~ 122 (440)
+.+||+|+.+++|+||+||+++| ++||||||+||+++. +||||+||||+|+|||++|++.|+.+|..++.
T Consensus 5 ~~~Gl~g~~~~~S~IS~id~~~g~L~YRGydi~dLa~~~---------sFeeva~LL~~G~LP~~~e~~~f~~~L~~~~~ 75 (369)
T PRK12349 5 FSPGLDGVIAAETKISFLDTVKGEIVIQGYDLIELSKTK---------EYLDIVHLLLEEHLPNEDEKATLEKKLKEEYA 75 (369)
T ss_pred CCCccCCCeeeeeeceeEeCCCCEEEECCccHHHHHccC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Confidence 45899999999999999999888 699999999999985 59999999999999999999999999999999
Q ss_pred CCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcc
Q 013583 123 VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKI 202 (440)
Q Consensus 123 lp~~v~~~i~~lP~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~liA~~p~i~a~~y~~~~~~~~~ 202 (440)
+|+.+.++++.+|+++|||++|+++|++++.+++.. + +..++...+++++|||++|+|+|++||+..+ .++
T Consensus 76 ~p~~v~~~l~~~p~~~~pm~~l~~~vs~l~~~d~~~--~------~~~~~~~~~~a~~lia~~p~i~a~~~r~~~g-~~~ 146 (369)
T PRK12349 76 VPEGVFNILKALPKETHPMDGLRTGVSALAGYDNDI--E------DRSLEVNKSRAYKLLSKVPNIVANSYHILNN-EEP 146 (369)
T ss_pred CCHHHHHHHHhCCCCCCHHHHHHHHHHHhcccCccc--c------ccCcHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCC
Confidence 999999999999999999999999999999876542 1 1235667889999999999999999998755 458
Q ss_pred cCCCCCCCHHHHHHhhhcC--CchHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCcChHHHHHHHHhhhcccccccch
Q 013583 203 IPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLAN 280 (440)
Q Consensus 203 ~~p~~~l~~~~n~l~ml~~--~~~~~~~~l~~~Lvl~ADHeg~n~St~aaRv~aSt~ad~y~avaAgl~al~GplHGGA~ 280 (440)
+.|+++++|++||++|+++ |++...++||++|||||||| +|+||||+|+++||++|+|+||+|||++|+||+||||+
T Consensus 147 ~~p~~~l~~a~nfl~ml~g~~p~~~~~~~~~~~Lvl~ADH~-lnaStfa~Rv~aSt~ad~~~av~agl~al~GplHGGA~ 225 (369)
T PRK12349 147 IEPLKELSYSANFLYMLTGKKPTELEEKIFDRSLVLYSEHE-MPNSTFTARVIASTQSDLYGALTGAVASLKGSLHGGAN 225 (369)
T ss_pred CCCCcCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCcC-ccHHHHHHHHHHccCccHHHHHHHHHHhccCccccChH
Confidence 8999999999999999976 78889999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCC-CCCCccHHHHHHHHHhhC---CCChHHHHHHHHH
Q 013583 281 QEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVL-RKTDPRYTCQREFALKHL---PDDPLFQLVSKLF 356 (440)
Q Consensus 281 ~~~~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~~~~ipGfGH~vy-~~~DPRa~~L~~~a~~~~---~~~~~~~~a~~le 356 (440)
++|++||.++ + +++++++||++.+++|++||||||||| +..|||+++|+++++++. +..++++++++++
T Consensus 226 e~~~~~l~~i----~---~~~~~~~~v~~~l~~~~~i~GFGH~vy~~~~DPRa~~l~~~~~~l~~~~~~~~~~~~~~~~e 298 (369)
T PRK12349 226 EAVMYMLLEA----G---TVEKFEELLQKKLYNKEKIMGFGHRVYMKKMDPRALMMKEALKQLCDVKGDYTLYEMCEAGE 298 (369)
T ss_pred HHHHHHHHHc----C---CHHHHHHHHHHHHhcCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 9999999886 4 468999999999999999999999999 668999999999998763 3457888888888
Q ss_pred HhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhhhHHHhHHHHHHcCCCccCCCccchhHH
Q 013583 357 EVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWI 432 (440)
Q Consensus 357 ~~~~~~~~~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~Gw~AH~~Eq~~~~~~i~RP~~~~~~~~ 432 (440)
+++.+ .++++||||||+|++++.||||+ +++|++|++||++||+||++||++++ +++||++.|+|..
T Consensus 299 ~~~~~-------~~gl~pNvD~~~a~l~~~lG~p~-~~~~~lf~i~R~~Gw~AH~~Eq~~~~-~l~RP~~~Y~G~~ 365 (369)
T PRK12349 299 KIMEK-------EKGLYPNLDYYAAPVYWMLGIPI-QLYTPIFFSSRTVGLCAHVIEQHANN-RLFRPRVNYIGER 365 (369)
T ss_pred HHHHH-------hcCCCCCcHHHHHHHHHHcCCCh-hhhhHHHHHHHHHHHHHHHHHHHhcC-CCccccceeeCCC
Confidence 87753 47899999999999999999996 99999999999999999999999987 5899999999964
No 28
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA). Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site []. The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH []. This entry represents types I and II citrate synthase enzymes, as well as the related enzymes 2-methylcitrate synthase and ATP citrate synthase. 2-methylcitrate (2.3.3.5 from EC) synthase catalyses the conversion of oxaloacetate and propanoyl-CoA into (2R,3S)-2-hydroxybutane-1,2,3-tricarboxylate and coenzyme A. This enzyme is induced during bacterial growth on propionate, while type II hexameric citrate synthase is constitutive []. ATP citrate synthase (2.3.3.8 from EC) (also known as ATP citrate lyase) catalyses the MgATP-dependent, CoA-dependent cleavage of citrate into oxaloacetate and acetyl-CoA, a key step in the reductive tricarboxylic acid pathway of CO2 assimilation used by a variety of autotrophic bacteria and archaea to fix carbon dioxide []. ATP citrate synthase is composed of two distinct subunits. In eukaryotes, ATP citrate synthase is a homotetramer of a single large polypeptide, and is used to produce cytosolic acetyl-CoA from mitochondrial produced citrate [].; GO: 0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer, 0044262 cellular carbohydrate metabolic process; PDB: 2C6X_D 3L96_B 1OWB_B 1NXG_A 1K3P_A 1OWC_B 3L97_B 1NXE_A 3L98_A 3L99_A ....
Probab=100.00 E-value=2.1e-92 Score=720.14 Aligned_cols=348 Identities=32% Similarity=0.533 Sum_probs=299.8
Q ss_pred ccccccccccccceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCH
Q 013583 47 GMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPD 125 (440)
Q Consensus 47 Gl~g~~~~~t~is~iD~~~G-i~YRGy~I~eL~~~~~~~~~~~~~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~~lp~ 125 (440)
||+|+++++|+||+||+++| ++||||+|+||+++. +||||+||||+|+|||++|+++|+++|..++.+|+
T Consensus 1 Gl~gv~v~~T~Is~id~~~G~L~YRGy~i~dL~~~~---------sfeeva~LL~~g~lP~~~el~~f~~~l~~~~~lpe 71 (356)
T PF00285_consen 1 GLRGVPVCETSISFIDGEKGILRYRGYDIEDLAENA---------SFEEVAYLLWYGELPTAEELEEFSAELKERRALPE 71 (356)
T ss_dssp GGTTEEEEEESSEEEETTTTEEEETTEEHHHHHHHS---------BHHHHHHHHHHSS--BHHHHHHHHHHHHCTTS--H
T ss_pred CCCCCeEeeeeCeEEeCCCCEEEEcCeEHHHHHhcC---------CHHHHHHHHHhccCCChhhhccchhHHHhhcchhH
Confidence 89999999999999999999 799999999999975 59999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccCC
Q 013583 126 YVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPK 205 (440)
Q Consensus 126 ~v~~~i~~lP~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~liA~~p~i~a~~y~~~~~~~~~~~p 205 (440)
++.+++++||+++|||++|+++|++|+.++++ .....+|+..++++++++|++|+|+|++|++..+ .++++|
T Consensus 72 ~v~~~i~~lp~~~~pm~~L~~~vs~l~~~~~~-------~~~~~~~~~~~~~~~~liA~~p~i~a~~~~~~~g-~~~~~p 143 (356)
T PF00285_consen 72 EVIEVIEALPRDAHPMDVLRAAVSALSAFDPD-------PLYDNSPEDVLEDAIRLIAKIPTIVAAIYRHRRG-QPPIPP 143 (356)
T ss_dssp HHHHHHHCSTTTS-HHHHHHHHHHHHHHHSTT-------GTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S-----
T ss_pred HHHHHHhhcCCCCCchHHHHHHHhhhhhhhhc-------cccccchhHHHHHHHHHhhcchHHHHHHHHHhCC-CCcccc
Confidence 99999999999999999999999999986654 1234568899999999999999999999999855 358889
Q ss_pred CCCCCHHHHHHhhh--cC--CchHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCcChHHHHHHHHhhhcccccccchH
Q 013583 206 DDSLDYGGNFSHML--GF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQ 281 (440)
Q Consensus 206 ~~~l~~~~n~l~ml--~~--~~~~~~~~l~~~Lvl~ADHeg~n~St~aaRv~aSt~ad~y~avaAgl~al~GplHGGA~~ 281 (440)
+++++|++||++|+ .+ |++.++++||++|||||||| +|||||++|+++||++|+|+|++||+++++||+||||++
T Consensus 144 ~~~~~~~~n~l~~l~~~g~~p~~~~~~~l~~~lvl~aDH~-~~~St~aaR~~aSt~~~~~~av~agl~al~G~~hgga~~ 222 (356)
T PF00285_consen 144 DPDLSYAENFLYMLGVTGREPDPEEARALDAALVLHADHG-LNPSTFAARVAASTGADLYSAVAAGLAALSGPLHGGANE 222 (356)
T ss_dssp -TTSSHHHHHHHHHH-HSSB--HHHHHHHHHHHHHHS--S-SSHHHHHHHHHHTTT--HHHHHHHHHHHHCSTTTTTHHH
T ss_pred ccchHHHHHHHHHhhccccCCChHHHHHHHHHHHhhcCCC-CCccchhhhhhhccCcchhHHHHhhhhhccCcccccccH
Confidence 99999999999999 33 68999999999999999997 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHh
Q 013583 282 EVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEV 358 (440)
Q Consensus 282 ~~~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~~~~ipGfGH~vy~~~DPRa~~L~~~a~~~~---~~~~~~~~a~~le~~ 358 (440)
+|++||+++ + +++++++||++.+++|++|||||||+||..|||+++|+++++++. ..++++++++++|++
T Consensus 223 ~~~~~l~~i----~---~~~~~~~~v~~~l~~~~~i~GfGH~vy~~~DPRa~~l~~~~~~~~~~~~~~~~~~~~~~ie~~ 295 (356)
T PF00285_consen 223 AAMRMLQEI----G---SPENVEEYVEERLAKGERIPGFGHRVYKNGDPRAEALLALARELGEEFPDGPLVELAEAIEEA 295 (356)
T ss_dssp HHHHHHHHH----S---SGGGHHHHHHHHHHTTSTTTTBCESSSSS--HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----H---hhHHHHHHHHHHHhccccccccCCCcCCCCCCChHHHHHHHHHhhhccCCCHHHHHHHHHHHH
Confidence 999999987 4 578999999999999999999999999999999999999999987 789999999999999
Q ss_pred hhhhHhhcCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhhhHHHhHHHHHHcCCCccCC
Q 013583 359 VPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERP 424 (440)
Q Consensus 359 ~~~~~~~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~Gw~AH~~Eq~~~~~~i~RP 424 (440)
+.+.+. .++++||||||+|++++.||||+ +++|++|++||++||+||++||++.+.+|+||
T Consensus 296 ~~~~~~----~~~l~pNvd~~~a~l~~~lG~p~-~~~~~if~~~R~~Gw~AH~~Eq~~~~~~i~RP 356 (356)
T PF00285_consen 296 APEDFK----ERKLYPNVDFYSAALLRALGFPP-ELFTAIFALSRTAGWIAHILEQRQLNNKIIRP 356 (356)
T ss_dssp HHHHHH----HHTESB-THHHHHHHHHHTT--G-GGHHHHHHHHHHHHHHHHHHHHHHCT------
T ss_pred HHHHHh----hccccCchhhHHHHHHHHHhcch-hhchHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 987653 45899999999999999999996 99999999999999999999999955579999
No 29
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=100.00 E-value=1.7e-91 Score=713.36 Aligned_cols=352 Identities=38% Similarity=0.587 Sum_probs=327.0
Q ss_pred cccccccccccccceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCC
Q 013583 46 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 124 (440)
Q Consensus 46 ~Gl~g~~~~~t~is~iD~~~G-i~YRGy~I~eL~~~~~~~~~~~~~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~~lp 124 (440)
+||+|+++++|+||+||+++| ++||||||+||+++. +||||+||||+|+||+++|+++|+.+|..++.+|
T Consensus 1 ~Gl~g~~v~~s~is~id~~~g~l~YRG~~i~dL~~~~---------~feeva~LL~~G~lP~~~el~~f~~~L~~~~~~p 71 (358)
T cd06118 1 PGLEGVKAKETSISYIDGDEGILRYRGYDIEELAEKS---------SFEEVAYLLLYGKLPTKEELAEFKKKLASHRALP 71 (358)
T ss_pred CCCCCceeeeeeeeEEeCCCCeEEECCccHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCC
Confidence 599999999999999999987 699999999999985 5999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccC
Q 013583 125 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 204 (440)
Q Consensus 125 ~~v~~~i~~lP~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~liA~~p~i~a~~y~~~~~~~~~~~ 204 (440)
+.+.++++.+|+++|||++|+++|++++.++++. .+.+|+...+++++|||++|+|++++|++..+. .++.
T Consensus 72 ~~v~~~~~~~p~~~~pm~~l~~~~~~l~~~~~~~--------~~~~~~~~~~~a~~lia~~~~i~a~~~~~~~g~-~~~~ 142 (358)
T cd06118 72 EHVVEILDLLPKNAHPMDVLRTAVSALGSFDPFA--------RDKSPEARYEKAIRLIAKLPTIAANIYRNREGL-EIIA 142 (358)
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHhhhccCCcc--------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCC
Confidence 9999999999999999999999999999876542 134578888999999999999999999987553 4788
Q ss_pred CCCCCCHHHHHHhhhcC--CchHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCcChHHHHHHHHhhhcccccccchHH
Q 013583 205 KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 282 (440)
Q Consensus 205 p~~~l~~~~n~l~ml~~--~~~~~~~~l~~~Lvl~ADHeg~n~St~aaRv~aSt~ad~y~avaAgl~al~GplHGGA~~~ 282 (440)
|++++||++||++|+++ |++..+++||++|||||||| +|+|||++|+++||++|+|+|++||+++|+||+||||+++
T Consensus 143 p~~~~~~~~~~~~~~~g~~p~~~~~~~l~~~Lvl~aDH~-~n~Stfa~R~~aSt~ad~~~av~agl~al~GplHGGA~~~ 221 (358)
T cd06118 143 PDPDLSYAENFLYMLFGEEPDPEEAKAMDLALILHADHE-GNASTFTARVVASTLSDMYSAIAAAIAALKGPLHGGANEA 221 (358)
T ss_pred CCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcCCC-CChHHHHHHHHHccCCCHHHHHHHHHHHccCccccChHHH
Confidence 99999999999999987 89999999999999999999 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhCC---CChHHHHHHHHHHhh
Q 013583 283 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLP---DDPLFQLVSKLFEVV 359 (440)
Q Consensus 283 ~~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~~~~ipGfGH~vy~~~DPRa~~L~~~a~~~~~---~~~~~~~a~~le~~~ 359 (440)
|++||+++ + +++++++||++.+++|++|||||||+||..|||+++|+++++++.. .+++++++.++++++
T Consensus 222 ~~~~l~~~----~---~~~~~~~~i~~~l~~~~~i~GfGH~vyk~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~~e~~~ 294 (358)
T cd06118 222 VLKMLLEI----G---TPENVEAYIWKKLANKRRIMGFGHRVYKTYDPRAKILKELAEELAEEKGDDKLFEIAEELEEIA 294 (358)
T ss_pred HHHHHHHh----C---CchHHHHHHHHHHhcCCeecCCCCCCCCCCCCchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 99999887 4 3478999999999999999999999999999999999999998854 589999999999998
Q ss_pred hhhHhhcCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhhhHHHhHHHHHHcCCCccCCCccc
Q 013583 360 PPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVT 428 (440)
Q Consensus 360 ~~~~~~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~Gw~AH~~Eq~~~~~~i~RP~~~~ 428 (440)
.+.. ..|+++||||||+|+++++||||+ +++|++|++||++||+||++||+.++.+|+||+++|
T Consensus 295 ~~~~----~~r~l~pNvd~~~~~l~~~lg~p~-~~~~~lf~i~R~~Gw~AH~~Eq~~~~~~iiRP~~~Y 358 (358)
T cd06118 295 LEVL----GEKGIYPNVDFYSGVVYKALGFPT-ELFTPLFAVSRAVGWLAHIIEYRENNQRLIRPRAEY 358 (358)
T ss_pred HHhh----cCCCCCcChHHHHHHHHHHcCcCH-HHHhHHHHHHHHhHHHHHHHHHHhCCCCccCCcccC
Confidence 7632 127999999999999999999995 999999999999999999999999986799999987
No 30
>PRK14033 citrate synthase; Provisional
Probab=100.00 E-value=2.4e-91 Score=713.88 Aligned_cols=358 Identities=24% Similarity=0.339 Sum_probs=329.8
Q ss_pred hccccccccccccccceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC
Q 013583 44 VIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT 122 (440)
Q Consensus 44 ~~~Gl~g~~~~~t~is~iD~~~G-i~YRGy~I~eL~~~~~~~~~~~~~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~~ 122 (440)
+..||+||++++|+||+||+++| ++||||||+||+++. +||||+||||+|+||+++|++.|+.+|..++.
T Consensus 9 ~~~GL~gv~v~~S~Is~id~~~g~L~yRG~di~dLa~~~---------sfeeva~LL~~G~lP~~~el~~f~~~l~~~~~ 79 (375)
T PRK14033 9 IKKGLAGVVVDTTAISKVVPETNSLTYRGYPVQDLAARC---------SFEEVAYLLWNGELPTDAELALFSQRERAYRR 79 (375)
T ss_pred CCCCCCCceEeeccCeEEECCCCeEEECCccHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Confidence 67999999999999999999887 699999999999986 59999999999999999999999999999999
Q ss_pred CCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcc
Q 013583 123 VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKI 202 (440)
Q Consensus 123 lp~~v~~~i~~lP~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~liA~~p~i~a~~y~~~~~~~~~ 202 (440)
+|+.+.+++..||+++|||++|+++|++++.++++. + +.+|+...+++++|+|++|+|+|++|++..+ .++
T Consensus 80 ~p~~v~~~~~~~p~~~~pm~~l~~~vs~l~~~d~~~--~------~~~~~~~~~~a~~lia~~~~i~a~~~~~~~g-~~~ 150 (375)
T PRK14033 80 LDRSVLSLIDKLPTTCHPMDVVRTAVSYLGAEDPEA--D------DSSPEANLAKALRLFAVLPTIVAADQRRRRG-LDP 150 (375)
T ss_pred CCHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCccc--c------cCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCc
Confidence 999999999999999999999999999999876542 1 2346778899999999999999999998755 358
Q ss_pred cCCCCCCCHHHHHHhhhcC--CchHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCcChHHHHHHHHhhhcccccccch
Q 013583 203 IPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLAN 280 (440)
Q Consensus 203 ~~p~~~l~~~~n~l~ml~~--~~~~~~~~l~~~Lvl~ADHeg~n~St~aaRv~aSt~ad~y~avaAgl~al~GplHGGA~ 280 (440)
++|+++++|++||++|+++ |++..+++||++|||||||| +|+||||+|+++||++|+|+||+|||++|+||+||||+
T Consensus 151 ~~p~~~~s~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~ADHg-ln~StfaaRv~aSt~adl~~av~agl~al~GplHGGA~ 229 (375)
T PRK14033 151 IAPRSDLGYAENFLHMCFGEVPEPEVVRAFEVSLILYAEHS-FNASTFTARVITSTLSDIYSAVTGAIGALKGPLHGGAN 229 (375)
T ss_pred cCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHhccCCCHHHHHHHHHhhccCccccChH
Confidence 8999999999999999965 68889999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHH
Q 013583 281 QEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFE 357 (440)
Q Consensus 281 ~~~~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~~~~ipGfGH~vy~~~DPRa~~L~~~a~~~~---~~~~~~~~a~~le~ 357 (440)
++|++||+++ + +++++++||++.+++|++|||||||+||..|||+++|++.+.++. +.++++++++++++
T Consensus 230 e~~~~~l~ei----~---~~~~~~~~v~~~~~~~~~l~GFGH~vyk~~DPRa~~L~~~l~~l~~~~~~~~~~~~~~~i~~ 302 (375)
T PRK14033 230 EAVMHTMLEI----G---DPARAAEWLRDALARKEKVMGFGHRVYKHGDSRVPTMKAALRRVAAVRDGQRWLDIYEALEK 302 (375)
T ss_pred HHHHHHHHHh----C---ChhHHHHHHHHHHhCCCceecCCCCCCCCCCchHHHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence 9999999887 4 468899999999999999999999999999999999999988764 45789999999999
Q ss_pred hhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhhhHHHhHHHHHHcCCCccCCCccchhHHHHHh
Q 013583 358 VVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKNC 436 (440)
Q Consensus 358 ~~~~~~~~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~Gw~AH~~Eq~~~~~~i~RP~~~~~~~~~~~~ 436 (440)
++.+ .++++||||||+|++++.||||+ ++++++|++||++||+||++||++++ +++||++.|+|...+.|
T Consensus 303 ~~~~-------~~gl~pNvD~~~a~l~~~lGip~-~~~~~lf~~~R~~Gw~AH~~Eq~~~~-~l~RP~~~YvG~~~~~~ 372 (375)
T PRK14033 303 AMAE-------ATGIKPNLDFPAGPAYYLMGFDI-DFFTPIFVMSRITGWTAHIMEQRASN-ALIRPLSEYNGPEQREV 372 (375)
T ss_pred HHHH-------HhCCCCCcHHHHHHHHHHcCcCc-hhhhHHHHHHHHHHHHHHHHHHHhcC-CccccCceecCCCCCCC
Confidence 8854 36899999999999999999996 99999999999999999999999987 59999999999865544
No 31
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-II, the major CS of the gram-positive bacterium Bacillus subtilis. A mutation in the gene which encodes BsCS-II (citZ gene) has been described which resulted in a significant loss of CS activity, partial glutamate auxotrophy, and a sporulation deficiency, a
Probab=100.00 E-value=7.3e-91 Score=707.98 Aligned_cols=350 Identities=27% Similarity=0.417 Sum_probs=324.8
Q ss_pred cccccccccccccceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCC
Q 013583 46 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 124 (440)
Q Consensus 46 ~Gl~g~~~~~t~is~iD~~~G-i~YRGy~I~eL~~~~~~~~~~~~~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~~lp 124 (440)
+||+|+++++|+||++|+++| ++|||||++||+++. +||||+||||+|++|+++|++.|..+|..++.+|
T Consensus 1 ~Gl~g~~~~~T~IS~id~~~g~L~yRG~di~dL~~~~---------~feeva~LL~~G~lP~~~e~~~f~~~l~~~~~~p 71 (356)
T cd06110 1 KGLEGVIAADSKISYIDGDAGILIYRGYDIHDLAENS---------TFEEVAYLLWNGELPTAEELDAFKAQLAAERELP 71 (356)
T ss_pred CCCCCCeeeeeeceEEECCCCeEEECCeeHHHHHhcC---------CHHHHHHHHHcCcCCCHHHHHHHHHhhhhccCCC
Confidence 599999999999999999999 599999999999985 5999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccC
Q 013583 125 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 204 (440)
Q Consensus 125 ~~v~~~i~~lP~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~liA~~p~i~a~~y~~~~~~~~~~~ 204 (440)
+.+.++++.||+++|||++|+++|++++.+++.. .+.+|+..++++++|+|++|+|+|++|++..+ .+++.
T Consensus 72 ~~v~~~~~~~p~~~~pm~~l~~~v~~l~~~~~~~--------~~~~~~~~~~~a~~lla~~p~i~a~~~~~~~~-~~~~~ 142 (356)
T cd06110 72 AEIIDLLKLLPKDAHPMDVLRTAVSALALYDPEA--------DDMSREANLRKAIRLIAKMPTIVAAFHRIRNG-LEPVA 142 (356)
T ss_pred HHHHHHHHhCCCCCCchHHHHHHHHhhhhcCCCc--------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCC
Confidence 9999999999999999999999999998765331 23457888999999999999999999987755 45889
Q ss_pred CCCCCCHHHHHHhhhcC--CchHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCcChHHHHHHHHhhhcccccccchHH
Q 013583 205 KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 282 (440)
Q Consensus 205 p~~~l~~~~n~l~ml~~--~~~~~~~~l~~~Lvl~ADHeg~n~St~aaRv~aSt~ad~y~avaAgl~al~GplHGGA~~~ 282 (440)
|+++++|++||++|+++ |++...++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||++.
T Consensus 143 p~~~~~~a~~~l~~l~g~~p~~~~~~~l~~~Lvl~aDHg-~n~Stfa~Rv~aSt~ad~~~av~agl~al~GplHGgA~~~ 221 (356)
T cd06110 143 PDPDLSHAANFLYMLTGEKPSEEAARAFDVALILHADHE-LNASTFAARVVASTLSDMYSAVTAAIGALKGPLHGGANER 221 (356)
T ss_pred CCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCC-CchhHHHHHHHHhcCCCHHHHHHHHHhhcCCCcccCcHHH
Confidence 99999999999999975 78889999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHhh
Q 013583 283 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVV 359 (440)
Q Consensus 283 ~~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~~~~ipGfGH~vy~~~DPRa~~L~~~a~~~~---~~~~~~~~a~~le~~~ 359 (440)
|++||+++ + +.+++++||++.+++|++|||||||+||..|||+++|+++++++. +++++++++.++|+++
T Consensus 222 ~~~~l~~~----~---~~~~~~~~v~~~~~~~~~i~GfGH~vy~~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~ie~~~ 294 (356)
T cd06110 222 VMKMLLEI----G---SVDNVAAYVKDKLANKEKIMGFGHRVYKTGDPRAKHLREMSRRLGKETGEPKWYEMSEAIEQAM 294 (356)
T ss_pred HHHHHHHh----C---CHHHHHHHHHHHHhcCCeecCCCCccCCCCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999987 4 467899999999999999999999999999999999999999873 4678999999999988
Q ss_pred hhhHhhcCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhhhHHHhHHHHHHcCCCccCCCccchh
Q 013583 360 PPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLD 430 (440)
Q Consensus 360 ~~~~~~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~Gw~AH~~Eq~~~~~~i~RP~~~~~~ 430 (440)
.+ .+|++||||||+|++++.||||+ +++|++|++||++||+||++||++++ +|+||+++|+|
T Consensus 295 ~~-------~~~l~pNvd~~~a~l~~~lg~p~-~~~~~lf~i~R~~Gw~AH~~Eq~~~~-~iiRP~~~Y~G 356 (356)
T cd06110 295 RD-------EKGLNPNVDFYSASVYYMLGIPV-DLFTPIFAISRVSGWCAHILEQYFNN-RLIRPRAEYVG 356 (356)
T ss_pred HH-------ccCCCcChHHHHHHHHHHcCcCh-hhhhHHHHHHHHHHHHHHHHHHHHcC-CccCCccccCC
Confidence 65 37899999999999999999996 99999999999999999999999987 59999999986
No 32
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II. Members of this family are dimeric enzymes with activity as 2-methylcitrate synthase, citrate synthase, or both. Many Gram-negative species have a hexameric citrate synthase, termed citrate synthase I (TIGR01798). Members of this family (TIGR01800) appear as a second citrate synthase isozyme but typically are associated with propionate metabolism and synthesize 2-methylcitrate from propionyl-CoA; citrate synthase activity may be incidental. A number of species, including Thermoplasma acidophilum, Pyrococcus furiosus, and the Antarctic bacterium DS2-3R have a bifunctional member of this family as the only citrate synthase isozyme.
Probab=100.00 E-value=5.7e-91 Score=710.85 Aligned_cols=356 Identities=28% Similarity=0.440 Sum_probs=328.3
Q ss_pred cccccccccccccceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCC
Q 013583 46 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 124 (440)
Q Consensus 46 ~Gl~g~~~~~t~is~iD~~~G-i~YRGy~I~eL~~~~~~~~~~~~~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~~lp 124 (440)
.||+|+++++|+||++|+++| ++||||||+||+++. +||||+||||+|+||+++|++.|...|..++.+|
T Consensus 1 ~Gl~g~~~~~t~Is~id~~~g~l~yRG~~i~dL~~~~---------~feeva~LL~~G~lP~~~e~~~f~~~l~~~~~~p 71 (368)
T TIGR01800 1 KGLEGVIADETALSTIDGSEGILTYRGYDIEDLAEHA---------SFEEVAYLLLHGKLPTRSELRKFKTELAKLRGLP 71 (368)
T ss_pred CCCCCCeeeeeeceEEECCcceEEECCeeHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcCCC
Confidence 599999999999999999999 699999999999985 5999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccC
Q 013583 125 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 204 (440)
Q Consensus 125 ~~v~~~i~~lP~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~liA~~p~i~a~~y~~~~~~~~~~~ 204 (440)
+.+.++++.||++.|||++|+++|++|+.+++.. + +..++...+++++|+|++|+|+|++|++..+ .+++.
T Consensus 72 ~~~~~~~~~~p~~~~pm~~l~~~ls~l~~~d~~~--~------~~~~~~~~~~a~~lia~~p~i~a~~~~~~~g-~~~~~ 142 (368)
T TIGR01800 72 DEVIELIEALPAESHPMDALRTAVSYLGALDPEA--F------GHTPEEARDIAIRLIAKLPTIVAYWYRIRNG-LEIVA 142 (368)
T ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHhhccCccc--c------cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCcC
Confidence 9999999999999999999999999999876542 1 1224567889999999999999999998764 45789
Q ss_pred CCCCCCHHHHHHhhhcC--CchHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCcChHHHHHHHHhhhcccccccchHH
Q 013583 205 KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 282 (440)
Q Consensus 205 p~~~l~~~~n~l~ml~~--~~~~~~~~l~~~Lvl~ADHeg~n~St~aaRv~aSt~ad~y~avaAgl~al~GplHGGA~~~ 282 (440)
|+++++|++||++|+++ |++..+++||++|||||||| +|+||||+|+++||++|+|+||+|||++|+||+||||++.
T Consensus 143 p~~~~~~~~n~l~ml~g~~p~~~~~~~l~~~Lvl~ADHg-~n~St~aaRv~aSt~adl~~av~agl~al~Gp~HGGA~~~ 221 (368)
T TIGR01800 143 PKEDDSHAANFLYMLHGEEPSKEEEKAMDIALILYAEHE-FNASTFAARVAASTLSDMYSAITAAIGALKGPLHGGANEA 221 (368)
T ss_pred CCCCccHHHHHHHHhcCCCCCHHHHHHHHHHHhHhccCC-CchHHHHHHHHhccCCCHHHHHHHHHhhcCCccccCHHHH
Confidence 99999999999999976 68889999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHhh
Q 013583 283 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVV 359 (440)
Q Consensus 283 ~~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~~~~ipGfGH~vy~~~DPRa~~L~~~a~~~~---~~~~~~~~a~~le~~~ 359 (440)
|++||.++ + +.+++++||++.+++|++||||||++||..|||+++|+++++++. +.+++++++.++++++
T Consensus 222 ~~~~l~~i----~---~~~~~~~~v~~~l~~~~~i~GfGH~vy~~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~ 294 (368)
T TIGR01800 222 VMAMLDEI----G---DPDKAEAWIRKALENKERIMGFGHRVYKTYDPRAKILKEYAKKLSAKEGDSKWYEIAERLEDVM 294 (368)
T ss_pred HHHHHHHh----c---ChHHHHHHHHHHHHCCCccCCCCCCCCCCCCchHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 99999886 4 457899999999999999999999999999999999999999873 4678999999999988
Q ss_pred hhhHhhcCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhhhHHHhHHHHHHcCCCccCCCccchhHHHHHh
Q 013583 360 PPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKNC 436 (440)
Q Consensus 360 ~~~~~~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~Gw~AH~~Eq~~~~~~i~RP~~~~~~~~~~~~ 436 (440)
.+ .++++||||||+|++++.||||+ +++|++|++||++||+||++||++++ +|+||++.|+|...+.+
T Consensus 295 ~~-------~~~l~pNvD~~~a~l~~~lg~p~-~~~~~lf~~~R~~Gw~AH~~Eq~~~~-~l~Rp~~~Y~G~~~~~~ 362 (368)
T TIGR01800 295 EK-------EKGIYPNVDFYSGSVYYSMGIPT-DLFTPIFAMSRVSGWTAHIIEQVENN-RLIRPRADYVGPEERKY 362 (368)
T ss_pred HH-------hcCCCCChHHHHHHHHHHcCcCH-HHhhhHHHHHHHHHHHHHHHHHHhcC-CccCccccccCCCCCCC
Confidence 65 36899999999999999999996 99999999999999999999999887 59999999999866554
No 33
>PRK12350 citrate synthase 2; Provisional
Probab=100.00 E-value=8.2e-91 Score=702.09 Aligned_cols=338 Identities=23% Similarity=0.295 Sum_probs=295.7
Q ss_pred cccccccccccccceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCcHHHHHHHHHhCCCCCHHHHH---HHHHHHHhhc
Q 013583 46 GGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVD---GLSKELRDRA 121 (440)
Q Consensus 46 ~Gl~g~~~~~t~is~iD~~~Gi-~YRGy~I~eL~~~~~~~~~~~~~~~Eev~~LLl~G~LPt~~el~---~f~~~L~~~~ 121 (440)
+||+|+.+++|+||+|||++|+ +||||+|+||++++ +||||+||||+|+|||+.+.+ .|+..+.
T Consensus 3 ~GL~~v~~~~s~Is~idg~~G~L~YRGy~i~dLa~~~---------sFeEva~LL~~G~LP~~~~~~~~~~~~~~~~--- 70 (353)
T PRK12350 3 PGLEGVVAFETEIAEPDGDGGALRYRGVDIEDLVGRV---------TFEDVWALLVDGRFGPGLPPAEPFPLPVHLG--- 70 (353)
T ss_pred CCCCCceeEeeeCcceeCCCCEEEECCccHHHHhccC---------CHHHHHHHHHCCCCCCcchhhhccchHHHhh---
Confidence 6999999999999999999995 99999999999986 599999999999999987544 3333322
Q ss_pred CCCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCc
Q 013583 122 TVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGK 201 (440)
Q Consensus 122 ~lp~~v~~~i~~lP~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~liA~~p~i~a~~y~~~~~~~~ 201 (440)
..+..+...+.. .|||+.|++++ +. ...+++++|+|++|+|+|++||++.|+.+
T Consensus 71 ~~~~~~~~~~~~----~~~~~~l~~~~------~~----------------~~~~~~~rliA~~pti~a~~~r~~~g~~~ 124 (353)
T PRK12350 71 DARVDVQAALAM----LAPVWGFRPLL------DI----------------DDLTARLDLARASVMALSAVAQSARGIGQ 124 (353)
T ss_pred ccchhhhhhHHH----hhHHHHHHhhc------CC----------------CCHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 233333333332 45677666643 10 11356799999999999999999876346
Q ss_pred ccCCCCCCCHHHHHHhhhcC-----CchHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCcChHHHHHHHHhhhccccc
Q 013583 202 IIPKDDSLDYGGNFSHMLGF-----DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLH 276 (440)
Q Consensus 202 ~~~p~~~l~~~~n~l~ml~~-----~~~~~~~~l~~~Lvl~ADHeg~n~St~aaRv~aSt~ad~y~avaAgl~al~GplH 276 (440)
+++|++++||++||++||.+ |++..+++||++|||||||| +|+||||+|+++||++|+|+||+||+++|+||+|
T Consensus 125 ~i~p~~~ls~a~nfl~ml~g~~~~~p~~~~~~~ld~~LiL~ADHg-~naSTfaaRv~aSt~adlysav~agi~aL~GplH 203 (353)
T PRK12350 125 PAVPQREIDHAATILERFMGRWRGEPDPAHVAALDAYWVSAAEHG-MNASTFTARVIASTGADVAAALSGAIGALSGPLH 203 (353)
T ss_pred CcCCCCCCCHHHHHHHHhccCccCCCCHHHHHHHHHHHHHhccCC-CCcchHHHHHHhccCCcHHHHHHHHHhhcCCCcc
Confidence 88999999999999999964 57888999999999999998 9999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhCCCChHHHHHHHHH
Q 013583 277 GLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLF 356 (440)
Q Consensus 277 GGA~~~~~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~~~~ipGfGH~vy~~~DPRa~~L~~~a~~~~~~~~~~~~a~~le 356 (440)
||||++|++||.++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. ++++++++++|
T Consensus 204 GGA~e~v~~ml~ei----~---~~~~~~~~v~~~l~~~~ri~GFGHrvYk~~DPRa~~L~~~~~~l~--~~~~~ia~~le 274 (353)
T PRK12350 204 GGAPARVLPMLDAV----E---RTGDARGWVKGALDRGERLMGFGHRVYRAEDPRARVLRATAKRLG--APRYEVAEAVE 274 (353)
T ss_pred cChHHHHHHHHHHh----C---ChhhHHHHHHHHHHCCCccccCCCCCCCCCCCCHHHHHHHHHHhC--ChHHHHHHHHH
Confidence 99999999999887 4 468999999999999999999999999999999999999999985 68999999999
Q ss_pred HhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhhhHHHhHHHHHHcCCCccCCCccchhHHH
Q 013583 357 EVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIE 433 (440)
Q Consensus 357 ~~~~~~~~~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~Gw~AH~~Eq~~~~~~i~RP~~~~~~~~~ 433 (440)
+++.+.+.+++..|+++||||||+|++++.||||. ++||++|++||++||+||++||+++| +|+||++.|+|...
T Consensus 275 ~~~~~~~~~~~~~r~l~pNVDfysa~v~~~lGip~-~~ft~lFai~R~~Gw~AH~~Eq~~~~-~i~RP~~~Y~G~~~ 349 (353)
T PRK12350 275 QAALAELRERRPDRPLETNVEFWAAVLLDFAGVPA-HMFTAMFTCGRTAGWSAHILEQKRTG-RLVRPSARYVGPAP 349 (353)
T ss_pred HHHHHHHHHhcCCCCCCcChHHHHHHHHHHcCcCh-hhhcchHHhhhHHHHHHHHHHHHhcC-CCcCCCcceeCCCC
Confidence 99987666677789999999999999999999996 99999999999999999999999987 59999999999753
No 34
>cd06101 citrate_synt Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the
Probab=100.00 E-value=1.3e-74 Score=566.58 Aligned_cols=259 Identities=43% Similarity=0.673 Sum_probs=240.4
Q ss_pred cccccccccccccceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCC
Q 013583 46 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 124 (440)
Q Consensus 46 ~Gl~g~~~~~t~is~iD~~~G-i~YRGy~I~eL~~~~~~~~~~~~~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~~lp 124 (440)
+||+|+++++|+||++|+++| ++||||||+||++++ +||||+||||+|+||
T Consensus 1 ~gl~~~~~~~t~is~id~~~g~l~yRGy~i~dL~~~~---------~f~ev~~LL~~G~lP------------------- 52 (265)
T cd06101 1 PGLRGVAALESEISVIDGDEGGLRYRGYPIEELAENS---------SFEEVAYLLLTGELP------------------- 52 (265)
T ss_pred CCCCCcceeeeEEEEEeCCCCEEEECCeeHHHHHhcC---------CHHHHHHHHHcCCCC-------------------
Confidence 599999999999999999988 699999999999986 599999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccC
Q 013583 125 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 204 (440)
Q Consensus 125 ~~v~~~i~~lP~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~liA~~p~i~a~~y~~~~~~~~~~~ 204 (440)
T Consensus 53 -------------------------------------------------------------------------------- 52 (265)
T cd06101 53 -------------------------------------------------------------------------------- 52 (265)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCHHHHHHhhhcC--CchHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCcChHHHHHHHHhhhcccccccchHH
Q 013583 205 KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 282 (440)
Q Consensus 205 p~~~l~~~~n~l~ml~~--~~~~~~~~l~~~Lvl~ADHeg~n~St~aaRv~aSt~ad~y~avaAgl~al~GplHGGA~~~ 282 (440)
+|++||++|+++ |++.++++||++||+||||| +|+||||+|+++||++|+|+||+||+++|+||+||||+++
T Consensus 53 -----~~~~nfl~m~~g~~p~~~~~~~l~~~Lvl~aDHg-~naST~aaRv~aSt~ad~~~av~agl~al~Gp~HGGA~e~ 126 (265)
T cd06101 53 -----SYAENFLYMLGGEEPDPEFAKAMDLALILHADHE-GNASTFTARVVGSTLSDPYSAIAAAIAALKGPLHGGANEA 126 (265)
T ss_pred -----cHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcCCC-CchHHHHHHHHHccCCcHHHHHHHHHHhCCCCCcCCHHHH
Confidence 689999999987 78999999999999999999 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhCC---CChHHHHHHHHHHhh
Q 013583 283 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLP---DDPLFQLVSKLFEVV 359 (440)
Q Consensus 283 ~~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~~~~ipGfGH~vy~~~DPRa~~L~~~a~~~~~---~~~~~~~a~~le~~~ 359 (440)
|++||+++.+ . ..++++++|.+.+++|++|||||||||+..|||+++|+++++++.. +++++++++++|+++
T Consensus 127 ~~~~l~~i~~----~-~~~~~~~~v~~~~~~~~~i~GFGH~vy~~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~~e~~~ 201 (265)
T cd06101 127 VLKMLEEIGT----P-KNEPAEAYIRKKLNSKRVLMGFGHRVYKKYDPRATVLKKFAEKLLKEKGLDPMFELAAELEKIA 201 (265)
T ss_pred HHHHHHHhCc----c-ccccHHHHHHHHHhcCCCccCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 9999998732 1 2368899999999999999999999999999999999999998753 589999999999988
Q ss_pred hhhHhhcCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhhhHHHhHHHHHHcCCCccCCCccc
Q 013583 360 PPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVT 428 (440)
Q Consensus 360 ~~~~~~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~Gw~AH~~Eq~~~~~~i~RP~~~~ 428 (440)
.+.. ..|+++||||||+|+++++||||+ +++|++|++||++||+||++||+.++.+|+||+++|
T Consensus 202 ~~~~----~~k~l~pNvd~~~a~v~~~lG~p~-~~~~~lf~i~R~~Gw~AH~~Eq~~~~~~i~RP~~~Y 265 (265)
T cd06101 202 PEVL----YEKKLYPNVDFYSGVLYKAMGFPT-ELFTPLFAVSRAVGWLAHLIEQREDGQRIIRPRAEY 265 (265)
T ss_pred HHHh----hccCCCCChHHHHHHHHHHhCCCh-HhhhhHHHHHhHhHHHHHHHHHHhcCCCccCCCccC
Confidence 7632 137999999999999999999996 999999999999999999999999986699999987
No 35
>cd06102 citrate_synt_like_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=100.00 E-value=1e-66 Score=512.86 Aligned_cols=266 Identities=25% Similarity=0.332 Sum_probs=233.6
Q ss_pred cccccccccceecCCCCeeecCCCHHHHhhhCCCCCCCCCCcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCHHHHH
Q 013583 50 GMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYK 129 (440)
Q Consensus 50 g~~~~~t~is~iD~~~Gi~YRGy~I~eL~~~~~~~~~~~~~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~ 129 (440)
|.++++|.||.|++ ++++|||||+.||+++. +||||+||||.|++|
T Consensus 17 g~~~~~t~It~i~~-~~~~yRG~da~~L~~~~---------~~e~va~LLw~g~~~------------------------ 62 (282)
T cd06102 17 GEPVLESAITLITE-GRLFYRGRDAVELAETA---------TLEEVAALLWDGDEA------------------------ 62 (282)
T ss_pred CCceEEeeeEEEeC-CeeEEcCccHHHHHhcC---------CHHHHHHHHHcCCch------------------------
Confidence 55799999999986 34999999999999986 599999999999999
Q ss_pred HHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccCCCCCC
Q 013583 130 AIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSL 209 (440)
Q Consensus 130 ~i~~lP~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~liA~~p~i~a~~y~~~~~~~~~~~p~~~l 209 (440)
-..| +.++. .. . + .+.++.
T Consensus 63 -----------~~~l-----------------------------------~~~~~------~~-----~-~---~~~~~~ 81 (282)
T cd06102 63 -----------ARLL-----------------------------------RLLAA------AL-----L-G---AAPSDA 81 (282)
T ss_pred -----------HHHH-----------------------------------HHHHH------Hh-----c-c---CCCCcc
Confidence 0011 11110 00 0 0 122367
Q ss_pred CHHHHHHhhhcCCchHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCcChHHHHHHHHhhhcccccccchHHHHHHHHH
Q 013583 210 DYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKS 289 (440)
Q Consensus 210 ~~~~n~l~ml~~~~~~~~~~l~~~Lvl~ADHeg~n~St~aaRv~aSt~ad~y~avaAgl~al~GplHGGA~~~~~~~l~~ 289 (440)
++++||++|+++ ++...++||++|||+|||| +|||||++|+++||++|+|+||+|||++|+||+||||++.|++||++
T Consensus 82 ~~~~~~~~~~~~-~~~~~~~l~~~LVL~ADHg-ln~St~aaRv~AStgadl~~avaagl~al~Gp~HGGA~~~a~~~l~e 159 (282)
T cd06102 82 PVHRRLARAWGL-DPAAADLLRRALVLLADHE-LNASTFAARVAASTGASLYAAVLAGLAALSGPRHGGATARVEALLDE 159 (282)
T ss_pred cHHHHHHHHhcC-CHHHHHHHHHHHHHHhccC-CCcHHHHHHHHhccCCcHHHHHHHHHHhCCCCCccCHHHHHHHHHHH
Confidence 899999999987 4468899999999999998 99999999999999999999999999999999999999999999998
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHhhcCCC
Q 013583 290 VVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKV 369 (440)
Q Consensus 290 i~~~ig~~~~~~~~~~~v~~~l~~~~~ipGfGH~vy~~~DPRa~~L~~~a~~~~~~~~~~~~a~~le~~~~~~~~~~~~~ 369 (440)
+. +.++++++|++.+++|++||||||++||..|||+++|+++++++.. +++++++++++++.+ .
T Consensus 160 ~~-------~~~~~~~~v~~~l~~g~~ipGFGH~vy~~~DPRa~~L~~~~~~~~~--~~~~~a~~ve~~~~~-------~ 223 (282)
T cd06102 160 AL-------RAGDAEAAVRERLRRGEALPGFGHPLYPDGDPRAAALLAALRPLGP--AAPPAARALIEAARA-------L 223 (282)
T ss_pred hc-------CCccHHHHHHHHHHcCCcccCCCCCCCCCCCccHHHHHHHHHHHhh--HHHHHHHHHHHHHHH-------H
Confidence 73 2457899999999999999999999999999999999999999866 899999999998865 2
Q ss_pred CCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhhhHHHhHHHHHHcCCCccCCCccchh
Q 013583 370 KNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLD 430 (440)
Q Consensus 370 ~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~Gw~AH~~Eq~~~~~~i~RP~~~~~~ 430 (440)
++++||||||++++++.||||+ ++++++|++||++||+||++||++++ +++||++.|+|
T Consensus 224 ~gl~pNvD~a~a~l~~~lG~p~-~~~~~lF~~~R~~GwiAH~~Eq~~~~-~liRP~~~Y~G 282 (282)
T cd06102 224 TGARPNIDFALAALTRALGLPA-GAAFALFALGRSAGWIAHALEQRAQG-KLIRPRARYVG 282 (282)
T ss_pred HCCCCChHHHHHHHHHHcCCCh-hhcchHHHHHHHHHHHHHHHHHHhcC-CCcCCCcccCC
Confidence 5799999999999999999996 99999999999999999999999997 59999999986
No 36
>cd06099 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) from citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. Some CS proteins function as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. CCL cleaves citryl-CoA (CiCoA) to AcCoA and OAA. ACLs catalyze an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA; they do this in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. The overall CS reaction is thought to proceed through three partial reactions and i
Probab=100.00 E-value=8.3e-60 Score=448.74 Aligned_cols=208 Identities=40% Similarity=0.635 Sum_probs=191.7
Q ss_pred CHHHHHHhhhcC--CchHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCcChHHHHHHHHhhhcccccccchHHHHHHH
Q 013583 210 DYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWI 287 (440)
Q Consensus 210 ~~~~n~l~ml~~--~~~~~~~~l~~~Lvl~ADHeg~n~St~aaRv~aSt~ad~y~avaAgl~al~GplHGGA~~~~~~~l 287 (440)
||++||++|+++ |++.++++||++||+||||| +|+|||++|+++||++|+|+||+|||++++||+||||+++|++||
T Consensus 1 ~~~~~fl~ml~g~~p~~~~~~~l~~~lvl~aDHg-~~~St~aar~~aSt~ad~~~av~Agl~al~Gp~hGGa~~~a~~~l 79 (213)
T cd06099 1 SYAENFLYMLGGEEPDPEFARAMDLALILHADHE-GNASTFTARVVGSTGSDPYSAIAAAIGALKGPLHGGANEAVLKML 79 (213)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCC-CchhhHHHHHHhccCCCHHHHHHHHHHHcCCCCcCCHHHHHHHHH
Confidence 699999999976 89999999999999999999 799999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhCC---CChHHHHHHHHHHhhhhhHh
Q 013583 288 KSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLP---DDPLFQLVSKLFEVVPPILT 364 (440)
Q Consensus 288 ~~i~~~ig~~~~~~~~~~~v~~~l~~~~~ipGfGH~vy~~~DPRa~~L~~~a~~~~~---~~~~~~~a~~le~~~~~~~~ 364 (440)
+++.+ . ..++++++|++.+++|++|||||||+|+..|||+++|+++++++.. .++++++++++|+++.+..
T Consensus 80 ~e~~~----~-~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~le~~~~~~~- 153 (213)
T cd06099 80 EEIGT----P-KNEPAEAYIRKKLESKRVIMGFGHRVYKKYDPRATVLKKFAEELLKEDGDDPMFELAAELEKIAEEVL- 153 (213)
T ss_pred HHhCC----c-ccccHHHHHHHHHhCCCcccCCCCCCCCCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh-
Confidence 98732 1 2367899999999999999999999999999999999999998753 3599999999999887632
Q ss_pred hcCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhhhHHHhHHHHHHcCCCccCCCccc
Q 013583 365 KLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVT 428 (440)
Q Consensus 365 ~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~Gw~AH~~Eq~~~~~~i~RP~~~~ 428 (440)
..|+++||||||+|+++++||||+ +++|++|++||++||+||++||+.++.+|+||++.|
T Consensus 154 ---~~r~l~~Nvd~~~a~l~~~lG~p~-~~~~~lf~~~R~~Gw~AH~~Eq~~~~~~l~RP~~~Y 213 (213)
T cd06099 154 ---YEKKLYPNVDFYSGVLYKAMGFPT-ELFTPLFAVARAVGWLAHLIEQLEDNFKIIRPRSEY 213 (213)
T ss_pred ---hccCCCCChHHHHHHHHHHcCcCH-HhhhHHHHHHHHHHHHHHHHHHHhCCCCccCCcccC
Confidence 237999999999999999999995 999999999999999999999999986799999987
No 37
>PRK06224 citrate synthase; Provisional
Probab=100.00 E-value=6.9e-59 Score=455.61 Aligned_cols=244 Identities=23% Similarity=0.237 Sum_probs=217.6
Q ss_pred ccccccceecCCCCeeecCCCHHHHhhhCCCCCCCCCCcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 013583 53 GLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAID 132 (440)
Q Consensus 53 ~~~t~is~iD~~~Gi~YRGy~I~eL~~~~~~~~~~~~~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~ 132 (440)
-.+|.||++|+++ ++||||||.||+++. +|+|++||||+|++|+++|+
T Consensus 8 ~~~T~i~~~~~~~-l~yrG~~~~dL~~~~---------sf~e~~~lll~G~lP~~~e~---------------------- 55 (263)
T PRK06224 8 WWRTSISDVTPEE-IYVRGYDLEDLIGKL---------SFTDMIFLLLRGRLPTPNEA---------------------- 55 (263)
T ss_pred CCceeeeeecCCe-eEECCccHHHHhhcC---------CHHHHHHHHHcCCCCCHHHH----------------------
Confidence 4679999999976 999999999999886 59999999999999986652
Q ss_pred cCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCCHH
Q 013583 133 ALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYG 212 (440)
Q Consensus 133 ~lP~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~liA~~p~i~a~~y~~~~~~~~~~~p~~~l~~~ 212 (440)
T Consensus 56 -------------------------------------------------------------------------------- 55 (263)
T PRK06224 56 -------------------------------------------------------------------------------- 55 (263)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhcCCchHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCcChHHHHHHHHhhhcccccccchHHHHHHHHHHHH
Q 013583 213 GNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVD 292 (440)
Q Consensus 213 ~n~l~ml~~~~~~~~~~l~~~Lvl~ADHeg~n~St~aaRv~aSt~ad~y~avaAgl~al~GplHGGA~~~~~~~l~~i~~ 292 (440)
++|+.+||++|||| +|||||++|+++||++|+|+|++||++++ ||+||||+++|++||.++..
T Consensus 56 ---------------r~f~a~Lv~~adHg-~~~St~aar~~ast~~~l~~av~agl~a~-G~~hgGa~~~a~~~l~e~~~ 118 (263)
T PRK06224 56 ---------------RLLDAVLVALVDHG-LTPSAAAARMTASGGESLQGAVAAGLLAL-GSVHGGAGEQAAELLQEIAA 118 (263)
T ss_pred ---------------HHHHHHHHHHhccC-CCcHHHHHHHHHhcCccHHHHHHHHHhhc-ccccCChhHHHHHHHHHHHh
Confidence 24677889999998 99999999999999999999999999999 99999999999999999976
Q ss_pred hcCCCCC-hhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHhhcCCCCC
Q 013583 293 ECGENVT-TEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKN 371 (440)
Q Consensus 293 ~ig~~~~-~~~~~~~v~~~l~~~~~ipGfGH~vy~~~DPRa~~L~~~a~~~~~~~~~~~~a~~le~~~~~~~~~~~~~~~ 371 (440)
.+++..+ .++++++|++.++++++||||||++||..|||+++|+++++++...+++++++.++++++.+. ++|+
T Consensus 119 ~~~~~~~~~~~~~~~v~~~~~~~~~ipGFGH~~y~~~DPRa~~L~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~ 193 (263)
T PRK06224 119 AADAGADLDAAARAIVAEYRAAGKRVPGFGHPLHKPVDPRAPRLLALAREAGVAGRHCRLAEALEAALAAA-----KGKP 193 (263)
T ss_pred hccccccHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh-----cCCC
Confidence 5443222 357899999999999999999999999999999999999999877789999999999988652 3578
Q ss_pred CCCchhhhHHHHHhccCCCcccchhhHHhhhhhhhHHHhHHHHHHcCCCccCCC------ccchhHH
Q 013583 372 PWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPK------SVTLDWI 432 (440)
Q Consensus 372 l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~Gw~AH~~Eq~~~~~~i~RP~------~~~~~~~ 432 (440)
++||||||+|+++++||||+ ++++++|++||++||+||++||++++. .+||. ..|+|.-
T Consensus 194 l~~Nvd~~~a~l~~~lG~p~-~~~~~lf~~~R~~G~~AH~~Eq~~~~~-~~r~~~~~~~~~~Y~G~~ 258 (263)
T PRK06224 194 LPLNVDGAIAAILADLGFPP-ALARGLFVISRAAGLVAHVWEELQQPI-GFRIWDPAEEAVEYTGPP 258 (263)
T ss_pred CCccHHHHHHHHHHHcCCCh-HHHhHHHHHHHHHHHHHHHHHHHhCCC-CcCCCCChhhcceecCCC
Confidence 99999999999999999996 999999999999999999999999874 55555 7888854
No 38
>cd06100 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CCL cleaves citryl-CoA (CiCoA) to acetyl-CoA (AcCoA) and oxaloacetate (OAA). ACL catalyzes an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. In fungi, yeast, plants, and animals ACL is cytosolic and generates AcCoA for lipogenesis. ACL may be required for fruiting body maturation in the filamentous fungus Sordaria macrospore. In several groups of autotrophic prokaryotes and archaea, ACL carries out the citrate-cleavage reaction of the reductive tricarboxylic acid (rTCA) cycle. In the family Aquificaceae this latter reaction in the rTCA cycle is carried out via a two enzyme system the second enzyme of which is CCL; the first enzyme is citryl-CoA synthetase (CC
Probab=100.00 E-value=2.2e-51 Score=394.73 Aligned_cols=208 Identities=25% Similarity=0.300 Sum_probs=189.6
Q ss_pred CCCHHHHHHhhhcC--CchHHHHHHHHHHHHhcCCCCC-CCchhHHHHHhhcC-cChHHHHHHHHhhhcccccccchHHH
Q 013583 208 SLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGG-NVSAHTGHLVASAL-SDPYLSFAAALNGLAGPLHGLANQEV 283 (440)
Q Consensus 208 ~l~~~~n~l~ml~~--~~~~~~~~l~~~Lvl~ADHeg~-n~St~aaRv~aSt~-ad~y~avaAgl~al~GplHGGA~~~~ 283 (440)
+.+|.+||++|+.+ |++.+.++|+.+||+++||| + |||||++|+++||+ +|+|+|++||++++ ||+||||++.+
T Consensus 10 ~~sf~e~~~lml~G~~P~~~e~~~f~~~Lvl~adhg-~~~~St~aar~~astg~~~~~~~vaag~~a~-G~~hgga~e~~ 87 (227)
T cd06100 10 KISFGDVLYLLLKGRLPTPYEARLLEALLVALADHG-PATPSAHAARLTASAGPEDLQSAVAAGLLGI-GDRFGGAGEGA 87 (227)
T ss_pred CCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccCC-CCCchHHHHHHHHHcCCccHHHHHHHHHhcc-CCcccChHHHH
Confidence 57899999999976 88899999999999999998 7 99999999999999 99999999999999 99999999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhH
Q 013583 284 LLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPIL 363 (440)
Q Consensus 284 ~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~~~~ipGfGH~vy~~~DPRa~~L~~~a~~~~~~~~~~~~a~~le~~~~~~~ 363 (440)
++|++++.+..++ ..+++++||++.+++|++|||||||+|+..|||+++|+++++++...+++++++.++++++.+.
T Consensus 88 ~~~l~~~~~~~~~--~~~~~~~~v~~~~~~~~~ipGfGH~v~~~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~- 164 (227)
T cd06100 88 ARLFKEAVDSGDA--LDAAAAEFVAEYRAAKKRIPGFGHPVHKNPDPRVPRLLELARELGPAGPHLDYALAVEKALTAA- 164 (227)
T ss_pred HHHHHHHHhcccc--hHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc-
Confidence 9999998653221 3478999999999999999999999999999999999999999987789999999999987652
Q ss_pred hhcCCCCCCCCchhhhHHHHHhccCCCcccchhhHHhhhhhhhHHHhHHHHHHcCCCccCCCc
Q 013583 364 TKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKS 426 (440)
Q Consensus 364 ~~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t~lF~isR~~Gw~AH~~Eq~~~~~~i~RP~~ 426 (440)
+.|+++||||+|+|+++++||||+ ++++++|++||++||+||++||++++. .+||..
T Consensus 165 ----~~~~l~~Nvd~~~a~~~~~lG~p~-~~~~~lf~~~R~~G~~AH~~Eq~~~~~-~~~~~~ 221 (227)
T cd06100 165 ----KGKPLPLNVDGAIAAILLDLGFPP-GALRGLFVLGRSPGLIAHALEEKRLGQ-PLYRHP 221 (227)
T ss_pred ----cCCCCcccHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCCc
Confidence 346899999999999999999996 999999999999999999999999984 556643
No 39
>PLN02522 ATP citrate (pro-S)-lyase
Probab=100.00 E-value=2.4e-51 Score=437.34 Aligned_cols=234 Identities=22% Similarity=0.266 Sum_probs=207.8
Q ss_pred ccccccccccceecCCCCeeecCCCHHHHhhh-CCCCCCCCCCcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCHHH
Q 013583 49 RGMTGLLWETSLLDPDEGIRFRGLSIPECQKL-LPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYV 127 (440)
Q Consensus 49 ~g~~~~~t~is~iD~~~Gi~YRGy~I~eL~~~-~~~~~~~~~~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~~lp~~v 127 (440)
|-=....|+||+.++++ ++||||+|.||+++ . +|.+++||||+|+.|++.|
T Consensus 348 ~~~~~~~t~I~~~~~~~-~~~rG~~i~dlig~~~---------~f~~~~~ll~~g~~p~~~~------------------ 399 (608)
T PLN02522 348 RAPTHIVSTISDDRGEE-PCYAGVPMSSIIEKDY---------GVGDVISLLWFKRSLPRYC------------------ 399 (608)
T ss_pred ecccceEEEeecCCCCe-eEECCccHHHHhccCC---------CHHHHHHHHHcCCCCCHHH------------------
Confidence 33456678888888766 99999999999984 4 4999999999999776222
Q ss_pred HHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccCCCC
Q 013583 128 YKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDD 207 (440)
Q Consensus 128 ~~~i~~lP~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~liA~~p~i~a~~y~~~~~~~~~~~p~~ 207 (440)
T Consensus 400 -------------------------------------------------------------------------------- 399 (608)
T PLN02522 400 -------------------------------------------------------------------------------- 399 (608)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCHHHHHHhhhcCCchHHHHHHHHHHHHhcCCCCCCCch-hHHHHHhhcCcChHHHHHHHHhhhcccccccchHHHHHH
Q 013583 208 SLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSA-HTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLW 286 (440)
Q Consensus 208 ~l~~~~n~l~ml~~~~~~~~~~l~~~Lvl~ADHeg~n~St-~aaRv~aSt~ad~y~avaAgl~al~GplHGGA~~~~~~~ 286 (440)
.++||++|||+|||| +|+|| |++|+++||++|+|+||+||++++ ||+||||++.|++|
T Consensus 400 -------------------~~~ld~~Lvl~ADHG-~~aSt~~aarv~AStg~dl~savaaGl~al-Gp~hGGA~e~a~~~ 458 (608)
T PLN02522 400 -------------------TKFIEMCIMLCADHG-PCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARY 458 (608)
T ss_pred -------------------HHHHHHHHHHhccCC-CCccHHHHHHHhhccCCcHHHHHHHHHHhc-CCcccchHHHHHHH
Confidence 357899999999998 99998 599999999999999999999998 99999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCC--CCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHh
Q 013583 287 IKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVL--RKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILT 364 (440)
Q Consensus 287 l~~i~~~ig~~~~~~~~~~~v~~~l~~~~~ipGfGH~vy--~~~DPRa~~L~~~a~~~~~~~~~~~~a~~le~~~~~~~~ 364 (440)
|+++.+ +.+++++||++.+++|++|||||||+| ++.|||+++|++++++++...+++++++++|+++.+
T Consensus 459 l~ei~~------~~~~~~~~V~~~~~~~~~IpGFGHrvy~~~~~DpRa~~L~~~~~~~~~~~~~~~~a~~vE~~~~~--- 529 (608)
T PLN02522 459 FKDAYD------RGLTPYEFVEGMKKKGIRVPGIGHRIKSRDNRDKRVELLQKYARTHFPSVKYMEYAVQVETYTLS--- 529 (608)
T ss_pred HHHHhc------cccCHHHHHHHHHhCCCccccCCCCCCCCCCCChhHHHHHHHHHHhccccHHHHHHHHHHHHHhh---
Confidence 998742 234789999999999999999999999 577999999999999988888999999999998643
Q ss_pred hcCCCCCCCCchhhhHHHHHhccCCCcccchh--------------hHHhhhhhhhHHHhHHHHHHcCCCccCC
Q 013583 365 KLGKVKNPWPNVDAHSGVLLNHFGLAEARYYT--------------VLFGVSRSLGICSQLIWDRALGLPLERP 424 (440)
Q Consensus 365 ~~~~~~~l~pNvD~~~a~l~~~lGlp~~~~~t--------------~lF~isR~~Gw~AH~~Eq~~~~~~i~RP 424 (440)
+.|+|+||||||+|+++.+||+|. ++|| ++|++||++||+||++||+...+|+||-
T Consensus 530 ---~~k~L~~NVDga~a~i~~~lg~p~-~~ft~~e~~~~~~~~~~~~lF~l~R~~GwiAH~~Eq~~~~~~~~r~ 599 (608)
T PLN02522 530 ---KANNLVLNVDGAIGSLFLDLLAGS-GMFTKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRH 599 (608)
T ss_pred ---ccCCCCcCcHhHHHHHHHHcCCCc-ccCccccccccccccccceEEEeehHHHHHHHHHHHHHhhCCcccC
Confidence 358999999999999999999995 8888 8999999999999999999998888884
No 40
>KOG1254 consensus ATP-citrate lyase [Energy production and conversion]
Probab=99.73 E-value=2.4e-18 Score=175.75 Aligned_cols=186 Identities=23% Similarity=0.226 Sum_probs=160.7
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCc-hhHHHHHhhcCcChHHHHHHHHhhhcccccccchHHHHHHHHHHHHhcCCCCChhh
Q 013583 224 PKMLELMRLYVTIHSDHEGGNVS-AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQ 302 (440)
Q Consensus 224 ~~~~~~l~~~Lvl~ADHeg~n~S-t~aaRv~aSt~ad~y~avaAgl~al~GplHGGA~~~~~~~l~~i~~~ig~~~~~~~ 302 (440)
+.....+|.++.+.+||+ ..+| ++-+.+.+.+++|+++++++||.+ .|++.|||...+.+.+.+.-++ .-.
T Consensus 389 ~Ya~kfie~~~m~~aDhg-p~Vsga~ntI~~~ra~kdl~sslv~gLlt-igdRfggald~aaR~f~~ayd~------GL~ 460 (600)
T KOG1254|consen 389 QYARKFIEICTMLTADHG-PAVSGAGNTIANFRAGKDLFSSLVRGLLT-IGDRFGGALDIAARRFGPAYDK------GLA 460 (600)
T ss_pred HHHHHHHHHHhhccCCCC-ceeEeccCceEEeccHHHHHHHHHHHHhh-hhhhhcchhhHHHHhcChhhhc------cCc
Confidence 345689999999999998 8877 788888999999999999999999 7999999998888888654332 236
Q ss_pred HHHHHHHHHhCCCcccccCCCCCC--CCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhH
Q 013583 303 LKDYVWKTLNSGKVVPGFGHGVLR--KTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHS 380 (440)
Q Consensus 303 ~~~~v~~~l~~~~~ipGfGH~vy~--~~DPRa~~L~~~a~~~~~~~~~~~~a~~le~~~~~~~~~~~~~~~l~pNvD~~~ 380 (440)
+.++|.+.+..+.+|||.||++-. +.|-|..++++++++.++..|+++.|.++|++... |..||..|||+..
T Consensus 461 ~m~fv~~~~k~~~~V~Gighriksi~n~d~rv~~lk~~~~~~fp~~~~~~yal~ve~~t~~------k~~nlilnvdg~i 534 (600)
T KOG1254|consen 461 PMRFVGKMRKVPIEVYGIGHRIKSINNPDKRVEILKAFARKNFPATPLLDYALEVEKITTS------KKPNLILNVDGAI 534 (600)
T ss_pred hHHHhhhhhCCCceecCCcceeeccCCcccchhhHHHHHHhhCCCchHHHhhhhheeeecc------CCCCEEEeccchh
Confidence 789999999999999999999984 57889999999999999999999999999998754 6679999999999
Q ss_pred HHHHhccCCCcccch--------------hhHHhhhhhhhHHHhHHHHHHcCCCccCC
Q 013583 381 GVLLNHFGLAEARYY--------------TVLFGVSRSLGICSQLIWDRALGLPLERP 424 (440)
Q Consensus 381 a~l~~~lGlp~~~~~--------------t~lF~isR~~Gw~AH~~Eq~~~~~~i~RP 424 (440)
|++|.+|=-.. .+| ..+|+++|++|++.|++.|.+...+++|-
T Consensus 535 ~~~fvd~l~~~-g~ft~~e~~e~i~ig~lng~fvl~rsig~igh~~dqkrlkq~lyrh 591 (600)
T KOG1254|consen 535 AVLFVDLLRNS-GMFTKEEADEYINIGALNGLFVLGRSIGFIGHYLDQKRLKQGLYRH 591 (600)
T ss_pred HHHHHHHHhcc-CCccHHHhhhheecccccceEEeeeecchhhhhccHhhhhCccccC
Confidence 99998764332 333 48999999999999999999998888874
No 41
>cd06100 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CCL cleaves citryl-CoA (CiCoA) to acetyl-CoA (AcCoA) and oxaloacetate (OAA). ACL catalyzes an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. In fungi, yeast, plants, and animals ACL is cytosolic and generates AcCoA for lipogenesis. ACL may be required for fruiting body maturation in the filamentous fungus Sordaria macrospore. In several groups of autotrophic prokaryotes and archaea, ACL carries out the citrate-cleavage reaction of the reductive tricarboxylic acid (rTCA) cycle. In the family Aquificaceae this latter reaction in the rTCA cycle is carried out via a two enzyme system the second enzyme of which is CCL; the first enzyme is citryl-CoA synthetase (CC
Probab=97.96 E-value=0.00095 Score=64.52 Aligned_cols=74 Identities=18% Similarity=0.192 Sum_probs=55.5
Q ss_pred CCCHHHHhhhCCCCCCCCCCcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--C-CHHHHHHHHcCCCC-CChHHHHHH
Q 013583 71 GLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--V-PDYVYKAIDALPVT-AHPMTQFAS 146 (440)
Q Consensus 71 Gy~I~eL~~~~~~~~~~~~~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~~--l-p~~v~~~i~~lP~~-~hPM~~L~~ 146 (440)
||||.||+++. +|+|++|||++|++|+++|++.|...|..... + ...+...--.-... +++-..+.+
T Consensus 1 G~~~~dL~~~~---------sf~e~~~lml~G~~P~~~e~~~f~~~Lvl~adhg~~~~St~aar~~astg~~~~~~~vaa 71 (227)
T cd06100 1 GYDLSDLIGKI---------SFGDVLYLLLKGRLPTPYEARLLEALLVALADHGPATPSAHAARLTASAGPEDLQSAVAA 71 (227)
T ss_pred CCCHHHHHhCC---------CHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHcCCccHHHHHHH
Confidence 89999999875 49999999999999999999999998865532 3 34433322222223 678888888
Q ss_pred HHHHhcc
Q 013583 147 GVMALQV 153 (440)
Q Consensus 147 ~vs~L~~ 153 (440)
++++++.
T Consensus 72 g~~a~G~ 78 (227)
T cd06100 72 GLLGIGD 78 (227)
T ss_pred HHhccCC
Confidence 8888854
No 42
>cd06099 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) from citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. Some CS proteins function as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. CCL cleaves citryl-CoA (CiCoA) to AcCoA and OAA. ACLs catalyze an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA; they do this in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. The overall CS reaction is thought to proceed through three partial reactions and i
Probab=80.67 E-value=6.5 Score=37.69 Aligned_cols=61 Identities=18% Similarity=0.166 Sum_probs=45.4
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhhc--CCCHHHHHHHHcCCCCCChHHHHHHHHHHhc
Q 013583 92 PEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDYVYKAIDALPVTAHPMTQFASGVMALQ 152 (440)
Q Consensus 92 ~Eev~~LLl~G~LPt~~el~~f~~~L~~~~--~lp~~v~~~i~~lP~~~hPM~~L~~~vs~L~ 152 (440)
|-|.+|++++|+.|+++|.+.|..-|.-+. .++..+....-.-...++|-.-+.++++++.
T Consensus 2 ~~~~fl~ml~g~~p~~~~~~~l~~~lvl~aDHg~~~St~aar~~aSt~ad~~~av~Agl~al~ 64 (213)
T cd06099 2 YAENFLYMLGGEEPDPEFARAMDLALILHADHEGNASTFTARVVGSTGSDPYSAIAAAIGALK 64 (213)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCchhhHHHHHHhccCCCHHHHHHHHHHHcC
Confidence 568999999999999999999998876553 2455444433333345688888889998883
No 43
>PRK14037 citrate synthase; Provisional
Probab=70.20 E-value=15 Score=38.38 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=48.0
Q ss_pred cHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc--CCCHHHHHHHHcCCCCCChHHHHHHHHHHhc
Q 013583 91 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDYVYKAIDALPVTAHPMTQFASGVMALQ 152 (440)
Q Consensus 91 ~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~--~lp~~v~~~i~~lP~~~hPM~~L~~~vs~L~ 152 (440)
+|-|.+|++++|+.|++++.+.|..-|.-+. .++..+....-.-...++|-..+.+++++|.
T Consensus 151 s~a~nfl~ml~G~~p~~~~~~~l~~~Lil~ADHg~naST~aarv~aSt~ad~ysav~agi~al~ 214 (377)
T PRK14037 151 SFAESFLLASFAREPTAEEIKAMDAALILYTDHEVPASTTAALVAASTLSDMYSCITAALAALK 214 (377)
T ss_pred CHHHHHHHHHhccCCcHHHHHHHHHHHhHhcccCCchHhHHHHHhhccCCCHHHHHHHHHHhcc
Confidence 5889999999999999999999998875554 3676666543333455788899999999883
No 44
>PRK14035 citrate synthase; Provisional
Probab=63.58 E-value=19 Score=37.53 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=45.4
Q ss_pred CcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc--CCCHHHHHHHHcCCCCCChHHHHHHHHHHhcc
Q 013583 90 PLPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDYVYKAIDALPVTAHPMTQFASGVMALQV 153 (440)
Q Consensus 90 ~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~--~lp~~v~~~i~~lP~~~hPM~~L~~~vs~L~~ 153 (440)
-+|-|.+|++++|+.|++.|.+.|..-|.-+. .+.......--.-...++|...+.+++++|..
T Consensus 150 ls~~~nfl~ml~g~~p~~~~~~~l~~~LvL~ADHg~naST~aaRv~aSt~ad~~sav~Agi~al~G 215 (371)
T PRK14035 150 LSYAANFLYMLRGELPTDIEVEAFNKALVLHADHELNASTFTARCAVSSLSDMYSGVVAAVGSLKG 215 (371)
T ss_pred CCHHHHHHHHhccCCCCHHHHHHHHHHHHHhccCCCCchHHHHHHHHhcCCcHHHHHHHHHHhccC
Confidence 35889999999999999999999998875553 23333333222223456788999999888743
No 45
>PRK14034 citrate synthase; Provisional
Probab=63.07 E-value=20 Score=37.47 Aligned_cols=63 Identities=16% Similarity=0.213 Sum_probs=45.3
Q ss_pred cHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc--CCCHHHHHHHHcCCCCCChHHHHHHHHHHhcc
Q 013583 91 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDYVYKAIDALPVTAHPMTQFASGVMALQV 153 (440)
Q Consensus 91 ~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~--~lp~~v~~~i~~lP~~~hPM~~L~~~vs~L~~ 153 (440)
+|-|.+|++++|+.|++.|.+.|..-|.-+. .+.......--.....++|-..+.+++++|..
T Consensus 151 s~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~aDHg~n~ST~aaRv~aSt~~d~ysav~agi~al~G 215 (372)
T PRK14034 151 SLAANFLYMLNGEEPDEVEVEAFNKALVLHADHELNASTFTARVCVATLSDVYSGITAAIGALKG 215 (372)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHhHhccCCCCccHHHHHHHhccCCcHHHHHHHHhcccCC
Confidence 5889999999999999999999998875553 23333333222233456788888888888754
No 46
>PRK12349 citrate synthase 3; Provisional
Probab=60.60 E-value=29 Score=36.13 Aligned_cols=62 Identities=16% Similarity=0.205 Sum_probs=46.2
Q ss_pred cHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc--CCCHHHHHHHHcCCCCCChHHHHHHHHHHhc
Q 013583 91 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDYVYKAIDALPVTAHPMTQFASGVMALQ 152 (440)
Q Consensus 91 ~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~--~lp~~v~~~i~~lP~~~hPM~~L~~~vs~L~ 152 (440)
+|-+.+|++++|+.|++.+.+.|..-|.-+. .++..+....-.-...++|-..+.+++++|.
T Consensus 154 ~~a~nfl~ml~g~~p~~~~~~~~~~~Lvl~ADH~lnaStfa~Rv~aSt~ad~~~av~agl~al~ 217 (369)
T PRK12349 154 SYSANFLYMLTGKKPTELEEKIFDRSLVLYSEHEMPNSTFTARVIASTQSDLYGALTGAVASLK 217 (369)
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCcCccHHHHHHHHHHccCccHHHHHHHHHHhcc
Confidence 5779999999999999999999998875553 3565544433333344688888888888884
No 47
>PRK14036 citrate synthase; Provisional
Probab=60.36 E-value=25 Score=36.80 Aligned_cols=63 Identities=19% Similarity=0.116 Sum_probs=45.8
Q ss_pred cHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc--CCCHHHHHHHHcCCCCCChHHHHHHHHHHhcc
Q 013583 91 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDYVYKAIDALPVTAHPMTQFASGVMALQV 153 (440)
Q Consensus 91 ~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~--~lp~~v~~~i~~lP~~~hPM~~L~~~vs~L~~ 153 (440)
+|-+.+|++++|+.|++.+.+.|..-|.-+. .+.......--.-...++|...+.+++.+|..
T Consensus 153 ~~a~nfl~ml~g~~p~~~~~~~l~~~Lil~ADHg~naST~aaRv~aSt~ad~ys~v~agi~aL~G 217 (377)
T PRK14036 153 DYAANFLYMLTEREPDPLAARIFDRCLILHAEHTINASTFSARVTASTLTDPYAVIASAVGTLAG 217 (377)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHhhhccCCCCchHHHHHHHHhcCCcHHHHHHHHHHHccC
Confidence 5889999999999999999999998875543 34444333322233456788888888888754
No 48
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, an
Probab=58.95 E-value=22 Score=37.14 Aligned_cols=61 Identities=18% Similarity=0.092 Sum_probs=45.1
Q ss_pred cHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc--CCCHH--HHHHHHcCCCCCChHHHHHHHHHHhcc
Q 013583 91 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDY--VYKAIDALPVTAHPMTQFASGVMALQV 153 (440)
Q Consensus 91 ~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~--~lp~~--v~~~i~~lP~~~hPM~~L~~~vs~L~~ 153 (440)
+|-|.+|++++|+.|++++.+.|..-|.-+. .+... ...++.+ ..++|...+.+++++|..
T Consensus 152 s~~~nfl~ml~g~~p~~~~~~~l~~~Lil~aDHg~n~STfaaRvvaS--t~ad~~s~~~aai~al~G 216 (373)
T cd06112 152 DYAENFLYMLFGEEPDPATAKILDACLILHAEHTMNASTFSALVTGS--TLADPYAVISSAIGTLSG 216 (373)
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCchHHHHHHHHh--cCCcHHHHHHHHHHhccC
Confidence 5889999999999999999999998875553 34433 3334443 346888888888888753
No 49
>KOG2617 consensus Citrate synthase [Energy production and conversion]
Probab=54.11 E-value=6.5 Score=41.11 Aligned_cols=51 Identities=18% Similarity=0.001 Sum_probs=34.1
Q ss_pred CCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcccCC-CCCCCHHHHHHhhh
Q 013583 169 KYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPK-DDSLDYGGNFSHML 219 (440)
Q Consensus 169 ~~~~~~~~~a~~liA~~p~i~a~~y~~~~~~~~~~~p-~~~l~~~~n~l~ml 219 (440)
-.||..+.+.+-.+++++-+++-+++.+.-+..+..| +-+.++..+|..+.
T Consensus 402 Gl~e~~fyTVLFgVsRa~Gvlsqliw~ralg~pieRPks~~t~~~~~~~~~~ 453 (458)
T KOG2617|consen 402 GLPELFFYTVLFGVSRALGVLSQLIWDRALGLPIERPKSVSTDWLHRFTNMV 453 (458)
T ss_pred CCcHHHHHHHHHHHhhhHHHHHHHHHHHHhCCcccCccccchHHHHHHHHHh
Confidence 4578888888889999999988755543322223333 55677777777665
No 50
>PRK12351 methylcitrate synthase; Provisional
Probab=53.37 E-value=47 Score=34.78 Aligned_cols=60 Identities=22% Similarity=0.220 Sum_probs=45.2
Q ss_pred cHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc--CCCHH--HHHHHHcCCCCCChHHHHHHHHHHhc
Q 013583 91 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDY--VYKAIDALPVTAHPMTQFASGVMALQ 152 (440)
Q Consensus 91 ~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~--~lp~~--v~~~i~~lP~~~hPM~~L~~~vs~L~ 152 (440)
++-|.+|++++|+.|++.+.+.|..-|.-+. .+... ...+..+ ..++|-..+.+++++|.
T Consensus 158 s~a~Nfl~ml~g~~p~~~~~~~l~~~LvL~ADH~~naST~aaRvvaS--t~ad~~sav~agi~aL~ 221 (378)
T PRK12351 158 SIGGHFLHLLHGKKPSESWVKAMHTSLILYAEHEFNASTFTARVIAG--TGSDMYSAITGAIGALR 221 (378)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccCCchHHHHHHHHhc--cCCCHHHHHHHHHHhcc
Confidence 5789999999999999999999999876554 24433 3344444 44688888888898883
No 51
>PRK14033 citrate synthase; Provisional
Probab=51.96 E-value=49 Score=34.56 Aligned_cols=60 Identities=17% Similarity=0.125 Sum_probs=44.4
Q ss_pred cHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc--CCCHHH--HHHHHcCCCCCChHHHHHHHHHHhc
Q 013583 91 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDYV--YKAIDALPVTAHPMTQFASGVMALQ 152 (440)
Q Consensus 91 ~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~--~lp~~v--~~~i~~lP~~~hPM~~L~~~vs~L~ 152 (440)
+|-+.+|++++|+.|++.+.+.|..-|.-+. .+.... ..+..+ ..++|-..+.+++++|.
T Consensus 158 s~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~ADHgln~StfaaRv~aS--t~adl~~av~agl~al~ 221 (375)
T PRK14033 158 GYAENFLHMCFGEVPEPEVVRAFEVSLILYAEHSFNASTFTARVITS--TLSDIYSAVTGAIGALK 221 (375)
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCcHHHHHHHHhc--cCCCHHHHHHHHHhhcc
Confidence 5889999999999999999999998775443 244333 334444 44688888888888884
No 52
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. DsCS, compared with CS from the hyperthermophile Pyrococcus furiosus (not included in this group), has an increase in the size of surface loops, a higher proline content in the loop regions, a more accessible active site, and a highe
Probab=51.07 E-value=50 Score=34.33 Aligned_cols=61 Identities=18% Similarity=0.126 Sum_probs=44.1
Q ss_pred cHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc--CCCHH--HHHHHHcCCCCCChHHHHHHHHHHhcc
Q 013583 91 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDY--VYKAIDALPVTAHPMTQFASGVMALQV 153 (440)
Q Consensus 91 ~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~--~lp~~--v~~~i~~lP~~~hPM~~L~~~vs~L~~ 153 (440)
+|-|.+|++++|+.|++++.+.|..-|.-+. .+... +..+..+ ..++|-..+.+++++|..
T Consensus 148 s~a~nfl~m~~g~~p~~~~~~~l~~~Lvl~ADHg~n~St~aaR~~aS--t~ad~~~av~agl~aL~G 212 (362)
T cd06111 148 GIAENFLHMCFGEVPSPEVVRAFDVSLILYAEHSFNASTFTARVITS--TLSDIYSAITGAIGALKG 212 (362)
T ss_pred CHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhccCCchhHHHHHHHHc--cCCCHHHHHHHHHhhccC
Confidence 5889999999999999999999998764443 24333 3345544 346788888888888743
No 53
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate though it has partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate and prefer PrCoA as substrate, but can also use AcCoA. Re 2-MCS1 can use butyryl-CoA and valeryl-CoA at a lower rate. A second Ralstonia eutropha 2MC
Probab=48.16 E-value=56 Score=34.02 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=45.0
Q ss_pred cHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc--CCCHH--HHHHHHcCCCCCChHHHHHHHHHHhc
Q 013583 91 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDY--VYKAIDALPVTAHPMTQFASGVMALQ 152 (440)
Q Consensus 91 ~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~--~lp~~--v~~~i~~lP~~~hPM~~L~~~vs~L~ 152 (440)
+|-|.+|.+++|+.|++++.+.|..-|.-+. .+... ...+.. ...++|-..+.+++++|.
T Consensus 146 s~a~nfl~ml~g~~p~~~~~~~l~~~LvL~ADH~~n~St~aaRv~a--St~ad~~sav~agi~al~ 209 (363)
T cd06108 146 SIAGHFLHLLHGKKPGELEIKAMDVSLILYAEHEFNASTFAARVTA--STLSDFYSAITGAIGTLR 209 (363)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHhhhhccCCCcchHHHHHHHh--ccCCCHHHHHHHHHHhcc
Confidence 5889999999999999999999998875553 24433 333444 345688888888888884
No 54
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate, but has a partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate, prefer PrCoA as substrate, but can also can use AcCoA. Re 2-MCS1 at a low rate can use butyryl-CoA and valeryl-CoA. A second Ralstonia eu
Probab=46.37 E-value=69 Score=33.36 Aligned_cols=60 Identities=18% Similarity=0.167 Sum_probs=45.0
Q ss_pred cHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc--CCCHHH--HHHHHcCCCCCChHHHHHHHHHHhc
Q 013583 91 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDYV--YKAIDALPVTAHPMTQFASGVMALQ 152 (440)
Q Consensus 91 ~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~--~lp~~v--~~~i~~lP~~~hPM~~L~~~vs~L~ 152 (440)
++-|.+|.+++|+.|++++.+.|..-|.-+. .+...+ ..+..+ ..++|-..+.+++++|.
T Consensus 149 s~a~Nfl~ml~g~~p~~~~~~~l~~~LvL~ADHg~n~ST~aarv~aS--t~ad~~sav~agi~aL~ 212 (366)
T cd06117 149 SIGGHFLHLLHGEKPSESWEKAMHISLILYAEHEFNASTFTARVIAG--TGSDMYSAITGAIGALR 212 (366)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccCCchHHHHHHHHHc--cCCcHHHHHHHHHHhcc
Confidence 5779999999999999999999999875553 244443 344444 44688888888888884
No 55
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) a carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) h
Probab=44.76 E-value=66 Score=33.98 Aligned_cols=60 Identities=12% Similarity=0.045 Sum_probs=44.8
Q ss_pred cHHHHHHHHHhC-CCCCHHHHHHHHHHHHhhc--C-CCHH--HHHHHHcCCCCCChHHHHHHHHHHhc
Q 013583 91 LPEGLLWLLLTG-KVPSKEQVDGLSKELRDRA--T-VPDY--VYKAIDALPVTAHPMTQFASGVMALQ 152 (440)
Q Consensus 91 ~~Eev~~LLl~G-~LPt~~el~~f~~~L~~~~--~-lp~~--v~~~i~~lP~~~hPM~~L~~~vs~L~ 152 (440)
+|-+.+|++++| +.|++.+.+.|..-|.-+. . ++.. ...+..+ ..++|-..+.+++.+|.
T Consensus 175 s~a~nfl~ml~g~~~p~~~~~~~l~~~Lvl~ADHg~~naST~aaRv~aS--t~ad~~~avaagi~al~ 240 (406)
T cd06113 175 STAENILSMLRPDKKYTELEAKLLDLCLVLHAEHGGGNNSTFTTRVVSS--SGTDTYSAIAAAIGSLK 240 (406)
T ss_pred CHHHHHHHHhccCCCCCHHHHHHHHHHHhhhhccCCCcchHHHHHHHHc--cCCCHHHHHHHHHHHcc
Confidence 588999999999 5999999999998875332 2 4433 4445554 44689999999999984
No 56
>PTZ00096 40S ribosomal protein S15; Provisional
Probab=43.94 E-value=17 Score=32.79 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=17.5
Q ss_pred eeecCCCHHHHhhhCCCCCCCCCCcHHHHHHH
Q 013583 67 IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWL 98 (440)
Q Consensus 67 i~YRGy~I~eL~~~~~~~~~~~~~~~Eev~~L 98 (440)
..||||+++||.+-. .||.+=|
T Consensus 15 f~yRG~~l~~L~~m~----------~~e~~~L 36 (143)
T PTZ00096 15 FTYRGVELEKLLALP----------EEELVEL 36 (143)
T ss_pred eeeecCCHHHHHcCC----------HHHHHHH
Confidence 389999999999873 6776655
No 57
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-II, the major CS of the gram-positive bacterium Bacillus subtilis. A mutation in the gene which encodes BsCS-II (citZ gene) has been described which resulted in a significant loss of CS activity, partial glutamate auxotrophy, and a sporulation deficiency, a
Probab=42.24 E-value=80 Score=32.65 Aligned_cols=60 Identities=17% Similarity=0.244 Sum_probs=45.1
Q ss_pred cHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc--CCCH--HHHHHHHcCCCCCChHHHHHHHHHHhc
Q 013583 91 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPD--YVYKAIDALPVTAHPMTQFASGVMALQ 152 (440)
Q Consensus 91 ~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~--~lp~--~v~~~i~~lP~~~hPM~~L~~~vs~L~ 152 (440)
+|-|.+|++++|+.|++++.+.|..-|.-+. .+.. .+..++.+-. ++|-..+.+++++|.
T Consensus 148 ~~a~~~l~~l~g~~p~~~~~~~l~~~Lvl~aDHg~n~Stfa~Rv~aSt~--ad~~~av~agl~al~ 211 (356)
T cd06110 148 SHAANFLYMLTGEKPSEEAARAFDVALILHADHELNASTFAARVVASTL--SDMYSAVTAAIGALK 211 (356)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCchhHHHHHHHHhcC--CCHHHHHHHHHhhcC
Confidence 5779999999999999999999998875543 2333 3455666644 678888888888883
No 58
>PRK14032 citrate synthase; Provisional
Probab=41.16 E-value=86 Score=33.60 Aligned_cols=60 Identities=10% Similarity=0.093 Sum_probs=45.2
Q ss_pred cHHHHHHHHHhCC-CCCHHHHHHHHHHHHhhc--C-CCHHHH--HHHHcCCCCCChHHHHHHHHHHhc
Q 013583 91 LPEGLLWLLLTGK-VPSKEQVDGLSKELRDRA--T-VPDYVY--KAIDALPVTAHPMTQFASGVMALQ 152 (440)
Q Consensus 91 ~~Eev~~LLl~G~-LPt~~el~~f~~~L~~~~--~-lp~~v~--~~i~~lP~~~hPM~~L~~~vs~L~ 152 (440)
+|-|.+|.+++|+ .|++.+.+.|..-|.-+. . ++..+. .++.+ ..++|-..+.+++++|.
T Consensus 205 s~a~nfl~ml~g~~~p~~~~~~~ld~~LiL~ADHg~~naSTfaaRv~aS--t~ad~ysavaagi~aL~ 270 (447)
T PRK14032 205 STAENILYMLRPDNKYTELEARLLDLALVLHAEHGGGNNSTFTTRVVSS--SGTDTYSAIAAAIGSLK 270 (447)
T ss_pred CHHHHHHHHhccCCCCCHHHHHHHHHHHHHHhccCCCchhHHHHHHHHc--cCCcHHHHHHHHHHhcc
Confidence 5789999999999 999999999998875442 2 444433 44444 44689999999999983
No 59
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II. Members of this family are dimeric enzymes with activity as 2-methylcitrate synthase, citrate synthase, or both. Many Gram-negative species have a hexameric citrate synthase, termed citrate synthase I (TIGR01798). Members of this family (TIGR01800) appear as a second citrate synthase isozyme but typically are associated with propionate metabolism and synthesize 2-methylcitrate from propionyl-CoA; citrate synthase activity may be incidental. A number of species, including Thermoplasma acidophilum, Pyrococcus furiosus, and the Antarctic bacterium DS2-3R have a bifunctional member of this family as the only citrate synthase isozyme.
Probab=40.50 E-value=93 Score=32.36 Aligned_cols=61 Identities=16% Similarity=0.173 Sum_probs=45.3
Q ss_pred CcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc--CCCHH--HHHHHHcCCCCCChHHHHHHHHHHhc
Q 013583 90 PLPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDY--VYKAIDALPVTAHPMTQFASGVMALQ 152 (440)
Q Consensus 90 ~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~--~lp~~--v~~~i~~lP~~~hPM~~L~~~vs~L~ 152 (440)
.+|.|.+|++++|+.|++.+.+.|..-|.-+. .+... +..++.+ ..++|-..+.+++++|.
T Consensus 147 ~~~~~n~l~ml~g~~p~~~~~~~l~~~Lvl~ADHg~n~St~aaRv~aS--t~adl~~av~agl~al~ 211 (368)
T TIGR01800 147 DSHAANFLYMLHGEEPSKEEEKAMDIALILYAEHEFNASTFAARVAAS--TLSDMYSAITAAIGALK 211 (368)
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHhHhccCCCchHHHHHHHHhc--cCCCHHHHHHHHHhhcC
Confidence 36889999999999999999999988875543 24333 3445544 44688888888888884
No 60
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-I, one of two CS isozymes in the gram-positive B. subtilis. The majority of CS activity in B. subtilis is provided by the other isozyme, BsCS-II (not included in this group). BsCS-
Probab=40.30 E-value=87 Score=32.39 Aligned_cols=60 Identities=22% Similarity=0.245 Sum_probs=44.6
Q ss_pred cHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc--CCC--HHHHHHHHcCCCCCChHHHHHHHHHHhc
Q 013583 91 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVP--DYVYKAIDALPVTAHPMTQFASGVMALQ 152 (440)
Q Consensus 91 ~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~--~lp--~~v~~~i~~lP~~~hPM~~L~~~vs~L~ 152 (440)
++-|.+|.+++|+.|++++.+.|..-|.-+. .+. .....+..+ ..++|-..+.+++++|.
T Consensus 137 s~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~ADHg~n~ST~aaRv~aS--t~ad~~savaagi~al~ 200 (349)
T cd06109 137 SHAADYLRMLTGEPPSEAHVRALDAYLVTVADHGMNASTFTARVIAS--TEADLTSAVLGAIGALK 200 (349)
T ss_pred CHHHHHHHHhCCCCCChHHHHHHHHHHhHhcccCCCchhhHHHHHhc--cCCcHHHHHHHHHHhcc
Confidence 5779999999999999999999998876443 233 233344444 44688899999999884
No 61
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=39.48 E-value=95 Score=32.13 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=45.8
Q ss_pred cHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc--CCCHH--HHHHHHcCCCCCChHHHHHHHHHHhc
Q 013583 91 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDY--VYKAIDALPVTAHPMTQFASGVMALQ 152 (440)
Q Consensus 91 ~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~--~lp~~--v~~~i~~lP~~~hPM~~L~~~vs~L~ 152 (440)
+|-+.++.+++|+.|++.+.+.|..-|.-+. .++.. +..++.+- .++|-..+.+++++|.
T Consensus 148 ~~~~~~~~~~~g~~p~~~~~~~l~~~Lvl~aDH~~n~Stfa~R~~aSt--~ad~~~av~agl~al~ 211 (358)
T cd06118 148 SYAENFLYMLFGEEPDPEEAKAMDLALILHADHEGNASTFTARVVAST--LSDMYSAIAAAIAALK 211 (358)
T ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcCCCCChHHHHHHHHHcc--CCCHHHHHHHHHHHcc
Confidence 4678999999999999999999998875543 34543 44455553 4789999999999884
No 62
>PRK04038 rps19p 30S ribosomal protein S19P; Provisional
Probab=39.18 E-value=23 Score=31.65 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=17.3
Q ss_pred eeecCCCHHHHhhhCCCCCCCCCCcHHHHHHH
Q 013583 67 IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWL 98 (440)
Q Consensus 67 i~YRGy~I~eL~~~~~~~~~~~~~~~Eev~~L 98 (440)
..|||++++||.+-. .||.+=|
T Consensus 7 f~yrG~~l~~L~~m~----------~~~~~~l 28 (134)
T PRK04038 7 FTYRGYTLEELQEMS----------LEEFAEL 28 (134)
T ss_pred eeecccCHHHHHcCC----------HHHHHHH
Confidence 479999999999873 6776654
No 63
>TIGR01025 rpsS_arch ribosomal protein S19(archaeal)/S15(eukaryotic). This model represents eukaryotic ribosomal protein S15 and its archaeal equivalent. It excludes bacterial and organellar ribosomal protein S19. The nomenclature for the archaeal members is unresolved and given variously as S19 (after the more distant bacterial homologs) or S15.
Probab=34.27 E-value=30 Score=30.99 Aligned_cols=14 Identities=36% Similarity=0.809 Sum_probs=12.5
Q ss_pred eeecCCCHHHHhhh
Q 013583 67 IRFRGLSIPECQKL 80 (440)
Q Consensus 67 i~YRGy~I~eL~~~ 80 (440)
..|||++++||.+-
T Consensus 5 f~yrG~~l~~L~~m 18 (135)
T TIGR01025 5 FRYRGYTLEELQDM 18 (135)
T ss_pred EeecccCHHHHHcC
Confidence 47999999999986
No 64
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA). Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site []. The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH []. This entry represents types I and II citrate synthase enzymes, as well as the related enzymes 2-methylcitrate synthase and ATP citrate synthase. 2-methylcitrate (2.3.3.5 from EC) synthase catalyses the conversion of oxaloacetate and propanoyl-CoA into (2R,3S)-2-hydroxybutane-1,2,3-tricarboxylate and coenzyme A. This enzyme is induced during bacterial growth on propionate, while type II hexameric citrate synthase is constitutive []. ATP citrate synthase (2.3.3.8 from EC) (also known as ATP citrate lyase) catalyses the MgATP-dependent, CoA-dependent cleavage of citrate into oxaloacetate and acetyl-CoA, a key step in the reductive tricarboxylic acid pathway of CO2 assimilation used by a variety of autotrophic bacteria and archaea to fix carbon dioxide []. ATP citrate synthase is composed of two distinct subunits. In eukaryotes, ATP citrate synthase is a homotetramer of a single large polypeptide, and is used to produce cytosolic acetyl-CoA from mitochondrial produced citrate [].; GO: 0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer, 0044262 cellular carbohydrate metabolic process; PDB: 2C6X_D 3L96_B 1OWB_B 1NXG_A 1K3P_A 1OWC_B 3L97_B 1NXE_A 3L98_A 3L99_A ....
Probab=32.08 E-value=1.7e+02 Score=30.22 Aligned_cols=61 Identities=21% Similarity=0.218 Sum_probs=42.8
Q ss_pred cHHHHHHHHH--hCCCCCHHHHHHHHHHHHhhc--CCCHH--HHHHHHcCCCCCChHHHHHHHHHHhcc
Q 013583 91 LPEGLLWLLL--TGKVPSKEQVDGLSKELRDRA--TVPDY--VYKAIDALPVTAHPMTQFASGVMALQV 153 (440)
Q Consensus 91 ~~Eev~~LLl--~G~LPt~~el~~f~~~L~~~~--~lp~~--v~~~i~~lP~~~hPM~~L~~~vs~L~~ 153 (440)
+|-|.++.+| +|+-|++++.+.|..-|.-+. .+... +..+.. ...++|-..+.+++++|..
T Consensus 148 ~~~~n~l~~l~~~g~~p~~~~~~~l~~~lvl~aDH~~~~St~aaR~~a--St~~~~~~av~agl~al~G 214 (356)
T PF00285_consen 148 SYAENFLYMLGVTGREPDPEEARALDAALVLHADHGLNPSTFAARVAA--STGADLYSAVAAGLAALSG 214 (356)
T ss_dssp SHHHHHHHHHH-HSSB--HHHHHHHHHHHHHHS--SSSHHHHHHHHHH--TTT--HHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhhccccCCChHHHHHHHHHHHhhcCCCCCccchhhhhhh--ccCcchhHHHHhhhhhccC
Confidence 5778888888 999999999999999886554 35544 334444 3557899999999999853
No 65
>cd06101 citrate_synt Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the
Probab=31.71 E-value=2e+02 Score=28.52 Aligned_cols=78 Identities=21% Similarity=0.187 Sum_probs=51.6
Q ss_pred CCHHHHhhhCCCCCCCCCCcHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc--CCCHHHHHHHHcCCCCCChHHHHHHHHH
Q 013583 72 LSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDYVYKAIDALPVTAHPMTQFASGVM 149 (440)
Q Consensus 72 y~I~eL~~~~~~~~~~~~~~~Eev~~LLl~G~LPt~~el~~f~~~L~~~~--~lp~~v~~~i~~lP~~~hPM~~L~~~vs 149 (440)
.+.+|.+--+- ++.-|++-+.++.+++|+-|+++|.+.|..-|.-+. .+...+....-.-...++|-..+.++++
T Consensus 37 ~~f~ev~~LL~---~G~lP~~~~nfl~m~~g~~p~~~~~~~l~~~Lvl~aDHg~naST~aaRv~aSt~ad~~~av~agl~ 113 (265)
T cd06101 37 SSFEEVAYLLL---TGELPSYAENFLYMLGGEEPDPEFAKAMDLALILHADHEGNASTFTARVVGSTLSDPYSAIAAAIA 113 (265)
T ss_pred CCHHHHHHHHH---cCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcCCCCchHHHHHHHHHccCCcHHHHHHHHHH
Confidence 45555554332 233446778899999999999999999998775543 2344333332233345688888888888
Q ss_pred Hhc
Q 013583 150 ALQ 152 (440)
Q Consensus 150 ~L~ 152 (440)
+|.
T Consensus 114 al~ 116 (265)
T cd06101 114 ALK 116 (265)
T ss_pred hCC
Confidence 884
No 66
>PF07583 PSCyt2: Protein of unknown function (DUF1549); InterPro: IPR011444 The function is not known. It is found associated with IPR022655 from INTERPRO. It is also found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=29.25 E-value=47 Score=31.85 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=20.8
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHH
Q 013583 92 PEGLLWLLLTGKVPSKEQVDGLSKE 116 (440)
Q Consensus 92 ~Eev~~LLl~G~LPt~~el~~f~~~ 116 (440)
|-==+||=|+|.+||.+|+++|.+.
T Consensus 27 ~lRRv~LDL~G~~PT~eEv~~Fl~d 51 (208)
T PF07583_consen 27 FLRRVYLDLTGLPPTPEEVRAFLAD 51 (208)
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHhC
Confidence 4445689999999999999999863
No 67
>PRK13755 putative mercury transport protein MerC; Provisional
Probab=28.00 E-value=48 Score=29.30 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=19.2
Q ss_pred chhhHHhhhhhhhHHHhHHHHHHc
Q 013583 394 YYTVLFGVSRSLGICSQLIWDRAL 417 (440)
Q Consensus 394 ~~t~lF~isR~~Gw~AH~~Eq~~~ 417 (440)
+|.++-.++-..||.+|.+|||..
T Consensus 56 lFA~iALlanalgW~sHRQW~Rs~ 79 (139)
T PRK13755 56 LFAAIALLANALGWFSHRQWLRSA 79 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566678889999999999975
No 68
>PRK13890 conjugal transfer protein TrbA; Provisional
Probab=26.54 E-value=2.9e+02 Score=23.83 Aligned_cols=42 Identities=24% Similarity=0.209 Sum_probs=22.3
Q ss_pred eecCCCHHHHhhhCCCCCCCCCCcHHHHHHHHHhCC-CCCHHHHHHHHHHH
Q 013583 68 RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGK-VPSKEQVDGLSKEL 117 (440)
Q Consensus 68 ~YRGy~I~eL~~~~~~~~~~~~~~~Eev~~LLl~G~-LPt~~el~~f~~~L 117 (440)
.-||++.+||++.+-- + .+.++-+..|+ -|+.+-+..+.+.|
T Consensus 15 ~~~Glsq~eLA~~~Gi-------s-~~~is~iE~g~~~ps~~~l~kIa~aL 57 (120)
T PRK13890 15 DERHMTKKELSERSGV-------S-ISFLSDLTTGKANPSLKVMEAIADAL 57 (120)
T ss_pred HHcCCCHHHHHHHHCc-------C-HHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3466777777766421 1 24444455554 46666555555444
No 69
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=24.08 E-value=74 Score=27.16 Aligned_cols=19 Identities=21% Similarity=0.569 Sum_probs=16.5
Q ss_pred hCCCCCHHHHHHHHHHHHh
Q 013583 101 TGKVPSKEQVDGLSKELRD 119 (440)
Q Consensus 101 ~G~LPt~~el~~f~~~L~~ 119 (440)
.|.|||.+|++.|-+....
T Consensus 69 ~g~lPt~~eVe~Fl~~v~~ 87 (105)
T PF09702_consen 69 VGYLPTDEEVEDFLDDVER 87 (105)
T ss_pred cCCCCChHHHHHHHHHHHH
Confidence 5999999999999988754
No 70
>PF08427 DUF1741: Domain of unknown function (DUF1741); InterPro: IPR013636 This is a eukaryotic domain of unknown function.
Probab=21.07 E-value=2.4e+02 Score=27.60 Aligned_cols=54 Identities=19% Similarity=0.113 Sum_probs=39.7
Q ss_pred CCHHHHhhhCCCCCCCCCCcHHHHHHHHHhCC--CCCHHHHHHHHHHHHhhcCCCHHHHHHHHcCC
Q 013583 72 LSIPECQKLLPAAKPDGEPLPEGLLWLLLTGK--VPSKEQVDGLSKELRDRATVPDYVYKAIDALP 135 (440)
Q Consensus 72 y~I~eL~~~~~~~~~~~~~~~Eev~~LLl~G~--LPt~~el~~f~~~L~~~~~lp~~v~~~i~~lP 135 (440)
.+|.+|+... +.=....+.+|+ ||++++.+++=-+|.+.+.+=+...++...-.
T Consensus 84 ~~i~~L~~~v----------v~l~n~~is~GDtFLPsp~~yDdL~YelVr~~~v~~~~~~~~~~~~ 139 (237)
T PF08427_consen 84 PDIFQLAEQV----------VNLFNFFISYGDTFLPSPASYDDLFYELVRSGQVFDKFRDMYLRSS 139 (237)
T ss_pred cChHHHHHHH----------HHHHHHHHHhccccCCChHHHHhHHHHhHhchHHHHHHHHHHhhcc
Confidence 5677888763 433467889999 89999999999999877665556555555443
No 71
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=20.81 E-value=2e+02 Score=28.04 Aligned_cols=56 Identities=21% Similarity=0.277 Sum_probs=41.3
Q ss_pred CCHHHHhhhCCCCCCCCCCcHHHHHHHHHhCC-CCCHHHHHHHHHHHHhhcCCCHHHHHHHHcCC
Q 013583 72 LSIPECQKLLPAAKPDGEPLPEGLLWLLLTGK-VPSKEQVDGLSKELRDRATVPDYVYKAIDALP 135 (440)
Q Consensus 72 y~I~eL~~~~~~~~~~~~~~~Eev~~LLl~G~-LPt~~el~~f~~~L~~~~~lp~~v~~~i~~lP 135 (440)
|+-+||.+..- .+|.++|==.+|+ +|+.++..+|-++|+....+.+.+.+-+.-.|
T Consensus 24 ~ty~el~~~~g--------~p~~~l~RYv~g~~~P~~~~a~~~~~~l~~~~~~~~~l~~ri~~~~ 80 (238)
T PRK08558 24 YTYEELSSITG--------LPESVLNRYVNGHVLPSVERAREIVEKLGPYYNLEEEVKARIKVDD 80 (238)
T ss_pred cCHHHHHHHHC--------CCHHHHHHHHcCCcCCCHHHHHHHHHHHHHhhhhHHHHHhhcccCC
Confidence 47788877641 5688888778888 79999999999999877666555555554344
No 72
>PF11591 2Fe-2S_Ferredox: Ferredoxin chloroplastic transit peptide; InterPro: IPR023383 This entry represent the N-terminal transit peptide of a number of algal petF genes. The peptide is removed during transit into the chloroplast lumen. The structure of chloroplast ferredoxin in water is unstructured however in a 30:70 molar-ratio mixture of 2,2,2-trifluoroethanol, residues 3 to 13 form an alpha-helix. The rest of the peptide remains unstructured []. This domain is the N-terminal of the [2Fe-2S), ferredoxin, from, C.reinhardtii:, petF., This, protein, catalyses, the, final, reaction, in, a, pathway, which, allows, the, production, of, H(2), from, water, in, the, chloroplast, ]. ; PDB: 1FCT_A.
Probab=20.45 E-value=42 Score=22.23 Aligned_cols=11 Identities=9% Similarity=0.238 Sum_probs=8.1
Q ss_pred chhHHHHHhhc
Q 013583 246 SAHTGHLVASA 256 (440)
Q Consensus 246 St~aaRv~aSt 256 (440)
|+|++||+++-
T Consensus 7 ssfaarvagar 17 (34)
T PF11591_consen 7 SSFAARVAGAR 17 (34)
T ss_dssp HHHHHHT-TSG
T ss_pred HHHHHHHccCc
Confidence 78999998764
No 73
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=20.17 E-value=1e+03 Score=25.08 Aligned_cols=82 Identities=11% Similarity=0.083 Sum_probs=45.2
Q ss_pred HHHHHhhcCcChH-HHHHHHHhhhcccccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCC
Q 013583 249 TGHLVASALSDPY-LSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRK 327 (440)
Q Consensus 249 aaRv~aSt~ad~y-~avaAgl~al~GplHGGA~~~~~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~~~~ipGfGH~vy~~ 327 (440)
|+|+++-.+ |+. +-+++-|++ .--+|--+-.+..+-+.++ +++..-..+.++++++-..|| |-.+-.
T Consensus 231 TarlA~~~g-Dp~la~icg~IAa-DE~rHe~fY~~iV~~~le~--------dPd~tm~Aiadmm~~ki~MPa--~~m~dg 298 (390)
T PLN00179 231 TARLAKEHG-DAKLAKICGTIAA-DEKRHETAYTRIVEKLFEI--------DPDGAVLAFADMMRKKITMPA--HLMYDG 298 (390)
T ss_pred HHHHHHhcC-ChHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhh--------CccHHHHHHHHHHHhcCCCCc--ccCCCC
Confidence 445554444 554 444444444 5566744433333333332 345666667778888888885 777777
Q ss_pred CCcc-HHHHHHHHHhh
Q 013583 328 TDPR-YTCQREFALKH 342 (440)
Q Consensus 328 ~DPR-a~~L~~~a~~~ 342 (440)
.||. +...-..+++.
T Consensus 299 ~d~~lF~~fsavaqr~ 314 (390)
T PLN00179 299 RDDNLFDHFSAVAQRL 314 (390)
T ss_pred CcchHHHHHHHHHHHh
Confidence 7875 33344444444
No 74
>COG0372 GltA Citrate synthase [Energy production and conversion]
Probab=20.02 E-value=3.2e+02 Score=28.85 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=47.2
Q ss_pred cHHHHHHHHHhCCCCCH-HHHHHHHHHHHhhc--CCCHHHHHHHHcCCCCCChHHHHHHHHHHhc
Q 013583 91 LPEGLLWLLLTGKVPSK-EQVDGLSKELRDRA--TVPDYVYKAIDALPVTAHPMTQFASGVMALQ 152 (440)
Q Consensus 91 ~~Eev~~LLl~G~LPt~-~el~~f~~~L~~~~--~lp~~v~~~i~~lP~~~hPM~~L~~~vs~L~ 152 (440)
++-+.+..+|+|+.|++ .+.+.|...|.-+. .++..+....-.-..-++|-.-+.++|++|.
T Consensus 163 s~a~nfL~ml~g~~p~~~~~~~a~d~~LiL~ADHe~NASTftarvvaST~sd~ys~i~agi~aL~ 227 (390)
T COG0372 163 SYAENFLYMLFGEPPSPPVEARAMDRALILHADHELNASTFTARVVASTGSDLYACIAAGIGALK 227 (390)
T ss_pred cHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHhccCCCcHHHHHHHHHhcCCcHHHHHHHHHHHcC
Confidence 57788999999999994 88899998875553 3665555444444456789999999999994
Done!