Query 013584
Match_columns 440
No_of_seqs 251 out of 1574
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 05:19:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013584.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013584hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1303 Amino acid transporter 100.0 1E-40 2.2E-45 336.7 22.4 275 160-437 34-321 (437)
2 PTZ00206 amino acid transporte 100.0 1.2E-36 2.6E-41 314.4 26.7 274 162-436 58-348 (467)
3 KOG1304 Amino acid transporter 100.0 4.3E-36 9.2E-41 298.6 26.6 270 161-436 44-332 (449)
4 PF01490 Aa_trans: Transmembra 100.0 2.4E-35 5.1E-40 300.7 -3.0 271 162-436 1-284 (409)
5 PLN03074 auxin influx permease 100.0 9.5E-31 2.1E-35 269.7 21.8 264 161-436 43-323 (473)
6 KOG4303 Vesicular inhibitory a 100.0 1.2E-28 2.5E-33 232.3 9.1 263 161-431 114-386 (524)
7 KOG1305 Amino acid transporter 99.9 7.8E-28 1.7E-32 241.9 13.2 259 161-421 3-270 (411)
8 COG0814 SdaC Amino acid permea 99.9 9.9E-26 2.1E-30 229.2 25.5 258 161-422 6-270 (415)
9 KOG1287 Amino acid transporter 99.8 2E-20 4.2E-25 188.2 16.5 235 157-403 7-261 (479)
10 TIGR00837 araaP aromatic amino 99.8 1.9E-19 4.2E-24 182.1 20.6 234 169-408 2-240 (381)
11 PRK10483 tryptophan permease; 99.8 1.6E-17 3.4E-22 167.2 25.9 233 161-401 8-247 (414)
12 PF03222 Trp_Tyr_perm: Tryptop 99.8 2.6E-17 5.6E-22 166.5 25.8 233 163-401 2-239 (394)
13 PRK09664 tryptophan permease T 99.8 7.1E-17 1.5E-21 162.3 26.1 232 161-399 6-246 (415)
14 PRK10435 cadB lysine/cadaverin 99.8 3.3E-17 7.1E-22 168.8 23.3 235 161-405 4-246 (435)
15 PRK10655 potE putrescine trans 99.8 8.2E-17 1.8E-21 166.0 25.5 235 161-404 5-247 (438)
16 COG1113 AnsP Gamma-aminobutyra 99.8 4.7E-17 1E-21 161.6 22.5 236 160-405 11-262 (462)
17 PRK10249 phenylalanine transpo 99.8 2.2E-16 4.9E-21 163.5 24.7 236 160-406 19-269 (458)
18 PRK11021 putative transporter; 99.7 4E-16 8.7E-21 159.5 25.0 229 164-401 1-232 (410)
19 TIGR01773 GABAperm gamma-amino 99.7 3.4E-16 7.4E-21 162.0 24.5 236 160-406 10-261 (452)
20 TIGR00906 2A0303 cationic amin 99.7 2.5E-16 5.4E-21 166.5 23.9 245 160-405 26-290 (557)
21 PRK10644 arginine:agmatin anti 99.7 4E-16 8.6E-21 161.2 24.4 236 161-405 7-250 (445)
22 PRK15049 L-asparagine permease 99.7 4.8E-16 1E-20 162.6 24.8 238 160-406 26-280 (499)
23 PRK11387 S-methylmethionine tr 99.7 6E-16 1.3E-20 161.0 24.1 236 160-406 12-266 (471)
24 PRK11049 D-alanine/D-serine/gl 99.7 7.6E-16 1.6E-20 160.1 24.7 234 160-404 18-269 (469)
25 PRK15132 tyrosine transporter 99.7 1E-15 2.2E-20 154.5 24.5 235 165-406 4-241 (403)
26 TIGR00930 2a30 K-Cl cotranspor 99.7 7.9E-16 1.7E-20 170.2 25.0 242 160-402 74-336 (953)
27 PRK10746 putative transport pr 99.7 1.3E-15 2.8E-20 157.9 24.8 236 160-406 8-260 (461)
28 PRK10836 lysine transporter; P 99.7 2.3E-15 4.9E-20 157.4 24.8 236 160-406 13-265 (489)
29 PRK10238 aromatic amino acid t 99.7 2.1E-15 4.6E-20 156.2 24.3 230 160-400 10-254 (456)
30 TIGR00909 2A0306 amino acid tr 99.7 1.5E-15 3.1E-20 156.2 22.9 243 161-404 2-253 (429)
31 PRK10580 proY putative proline 99.7 3.6E-15 7.7E-20 154.6 25.9 232 160-402 7-255 (457)
32 TIGR00911 2A0308 L-type amino 99.7 7.4E-15 1.6E-19 154.0 25.7 239 159-405 39-294 (501)
33 TIGR00912 2A0309 spore germina 99.7 3.7E-15 8.1E-20 149.7 22.0 236 163-411 2-243 (359)
34 TIGR00913 2A0310 amino acid pe 99.7 9.8E-15 2.1E-19 152.2 24.3 229 161-400 1-251 (478)
35 TIGR00905 2A0302 transporter, 99.7 1.8E-14 3.9E-19 150.0 24.6 237 161-405 6-257 (473)
36 TIGR03810 arg_ornith_anti argi 99.6 2.3E-14 5E-19 149.0 23.8 238 162-406 1-254 (468)
37 PRK11357 frlA putative fructos 99.6 3.1E-14 6.7E-19 147.1 23.3 232 160-402 6-251 (445)
38 PRK10197 gamma-aminobutyrate t 99.6 1.9E-14 4E-19 148.7 21.5 222 172-404 2-239 (446)
39 TIGR00908 2A0305 ethanolamine 99.6 5.9E-14 1.3E-18 144.9 24.5 230 160-400 5-245 (442)
40 TIGR00814 stp serine transport 99.6 8E-14 1.7E-18 141.0 23.9 235 169-408 8-255 (397)
41 COG0833 LysP Amino acid transp 99.6 9.5E-14 2.1E-18 140.9 20.6 232 159-400 41-288 (541)
42 PRK13629 threonine/serine tran 99.6 4.9E-13 1.1E-17 134.9 23.3 231 171-406 26-279 (443)
43 KOG1286 Amino acid transporter 99.6 5.5E-14 1.2E-18 146.7 15.7 238 158-403 26-289 (554)
44 PF13520 AA_permease_2: Amino 99.5 7.9E-13 1.7E-17 135.7 23.2 237 164-407 1-247 (426)
45 TIGR03428 ureacarb_perm permea 99.5 2E-12 4.3E-17 134.8 25.9 248 159-406 10-273 (475)
46 COG0531 PotE Amino acid transp 99.5 4.8E-12 1E-16 131.2 25.1 242 161-407 11-262 (466)
47 PF03845 Spore_permease: Spore 99.5 1.4E-11 3.1E-16 121.8 23.0 235 163-411 1-239 (320)
48 PRK15238 inner membrane transp 99.4 4.3E-11 9.3E-16 125.4 25.1 241 161-403 6-268 (496)
49 TIGR00907 2A0304 amino acid pe 99.4 7.2E-11 1.6E-15 123.3 23.8 246 159-406 9-277 (482)
50 PF00324 AA_permease: Amino ac 99.3 3.1E-12 6.8E-17 133.4 8.1 233 171-409 4-263 (478)
51 TIGR00910 2A0307_GadC glutamat 99.3 4.4E-10 9.4E-15 118.0 22.4 227 161-399 3-247 (507)
52 TIGR03813 put_Glu_GABA_T putat 99.3 1.1E-09 2.3E-14 114.4 24.4 238 163-406 2-254 (474)
53 KOG3832 Predicted amino acid t 99.0 5.6E-09 1.2E-13 93.1 12.7 213 164-377 12-303 (319)
54 COG3949 Uncharacterized membra 98.6 8.7E-06 1.9E-10 78.4 20.4 225 168-406 7-238 (349)
55 KOG1289 Amino acid transporter 98.5 1.3E-05 2.8E-10 82.1 21.0 256 157-416 43-322 (550)
56 PRK12488 acetate permease; Pro 98.3 0.00019 4.2E-09 76.2 24.2 151 161-323 66-218 (549)
57 TIGR00800 ncs1 NCS1 nucleoside 98.2 0.00046 1E-08 71.4 24.7 246 161-408 11-273 (442)
58 TIGR00813 sss transporter, SSS 98.2 0.00032 6.9E-09 71.8 22.9 150 161-322 2-153 (407)
59 TIGR00796 livcs branched-chain 98.2 0.00022 4.7E-09 71.9 20.5 217 171-404 2-243 (378)
60 PRK09395 actP acetate permease 98.2 0.00056 1.2E-08 72.8 24.8 149 161-321 68-218 (551)
61 TIGR02119 panF sodium/pantothe 98.1 0.00077 1.7E-08 70.4 24.3 233 161-405 39-294 (471)
62 PRK09442 panF sodium/panthothe 98.1 0.00094 2E-08 70.0 24.9 232 161-404 40-294 (483)
63 PRK11375 allantoin permease; P 98.1 0.0024 5.2E-08 66.8 26.0 246 161-409 24-294 (484)
64 COG1457 CodB Purine-cytosine p 98.0 0.0014 3.1E-08 66.8 22.9 192 229-435 85-282 (442)
65 COG0591 PutP Na+/proline sympo 98.0 0.0026 5.6E-08 66.7 25.7 152 161-324 37-194 (493)
66 PRK11017 codB cytosine permeas 98.0 0.0046 1E-07 63.2 26.2 230 165-408 11-245 (404)
67 PF00474 SSF: Sodium:solute sy 98.0 0.00022 4.8E-09 72.9 16.0 151 161-323 5-158 (406)
68 TIGR02711 symport_actP cation/ 98.0 0.0017 3.8E-08 69.0 23.2 148 161-321 66-216 (549)
69 TIGR02358 thia_cytX probable h 97.9 0.0054 1.2E-07 62.3 25.0 175 225-408 58-234 (386)
70 TIGR03648 Na_symport_lg probab 97.8 0.0041 8.9E-08 66.2 23.3 148 161-320 31-180 (552)
71 KOG2082 K+/Cl- cotransporter K 97.8 0.00048 1E-08 72.6 14.8 163 162-326 113-287 (1075)
72 TIGR00835 agcS amino acid carr 97.8 0.0044 9.6E-08 63.2 21.5 147 161-320 44-200 (425)
73 PF02554 CstA: Carbon starvati 97.7 0.01 2.2E-07 58.7 22.0 105 164-268 52-157 (376)
74 COG1953 FUI1 Cytosine/uracil/t 97.7 0.038 8.2E-07 56.8 26.5 271 161-433 38-333 (497)
75 TIGR02121 Na_Pro_sym sodium/pr 97.7 0.023 5E-07 59.6 25.4 151 161-322 35-193 (487)
76 PRK15419 proline:sodium sympor 97.6 0.021 4.5E-07 60.1 24.6 149 161-321 39-196 (502)
77 PRK10484 putative transporter; 97.5 0.029 6.4E-07 59.4 24.1 159 161-322 37-198 (523)
78 PF02133 Transp_cyt_pur: Perme 97.5 0.004 8.7E-08 64.3 16.0 241 161-404 6-259 (440)
79 KOG2083 Na+/K+ symporter [Inor 97.4 0.00037 8E-09 72.0 7.2 222 164-399 30-276 (643)
80 PHA02764 hypothetical protein; 97.3 0.014 3E-07 56.3 15.5 90 161-254 11-106 (399)
81 COG1966 CstA Carbon starvation 97.1 0.046 9.9E-07 56.6 18.6 102 164-265 52-154 (575)
82 PRK15015 carbon starvation pro 97.1 0.036 7.7E-07 58.7 17.5 100 167-266 86-186 (701)
83 KOG1288 Amino acid transporter 97.1 0.0029 6.2E-08 66.4 9.4 55 347-401 294-349 (945)
84 COG0733 Na+-dependent transpor 97.0 0.12 2.6E-06 52.5 20.8 234 162-399 7-267 (439)
85 PF01235 Na_Ala_symp: Sodium:a 96.6 0.25 5.3E-06 50.4 19.4 86 161-246 16-110 (416)
86 COG4147 DhlC Predicted symport 96.4 0.22 4.7E-06 50.9 17.1 180 213-404 93-294 (529)
87 PF00209 SNF: Sodium:neurotran 96.1 0.53 1.2E-05 49.9 19.0 224 164-394 5-297 (523)
88 PF05525 Branch_AA_trans: Bran 96.0 0.11 2.4E-06 53.2 13.0 76 226-312 262-337 (427)
89 TIGR00796 livcs branched-chain 95.9 0.22 4.7E-06 50.4 14.6 50 223-272 253-302 (378)
90 COG1115 AlsT Na+/alanine sympo 95.3 3.6 7.8E-05 42.1 20.4 234 161-406 60-325 (452)
91 COG1114 BrnQ Branched-chain am 95.2 0.45 9.7E-06 48.0 13.3 79 223-312 261-339 (431)
92 PF01566 Nramp: Natural resist 94.9 4.6 9.9E-05 40.5 22.1 80 225-315 42-123 (358)
93 PRK15433 branched-chain amino 94.3 0.58 1.2E-05 48.0 12.0 71 227-309 267-337 (439)
94 KOG2466 Uridine permease/thiam 93.6 8 0.00017 40.0 18.3 239 161-408 53-320 (572)
95 KOG1289 Amino acid transporter 93.4 2.2 4.7E-05 44.6 14.3 51 224-274 324-374 (550)
96 PRK00701 manganese transport p 91.2 20 0.00044 37.1 22.2 92 177-270 36-139 (439)
97 KOG3659 Sodium-neurotransmitte 91.1 23 0.00051 37.6 21.3 84 164-249 82-171 (629)
98 KOG2349 Na+:iodide/myo-inosito 91.0 0.24 5.2E-06 52.3 4.1 229 161-405 44-298 (585)
99 COG1914 MntH Mn2+ and Fe2+ tra 90.8 21 0.00046 36.6 18.6 46 225-270 77-122 (416)
100 KOG1832 HIV-1 Vpr-binding prot 89.0 0.22 4.8E-06 54.0 1.9 8 14-21 1404-1411(1516)
101 COG4145 PanF Na+/panthothenate 88.4 30 0.00065 34.8 19.8 237 161-409 38-300 (473)
102 PRK09928 choline transport pro 88.3 43 0.00093 36.5 19.3 268 164-438 93-426 (679)
103 PLN00151 potassium transporter 87.3 33 0.00072 38.0 16.9 301 1-398 20-432 (852)
104 PF02028 BCCT: BCCT family tra 87.1 43 0.00093 35.2 21.5 270 161-437 72-408 (485)
105 PRK15433 branched-chain amino 84.9 51 0.0011 34.1 17.2 218 165-404 9-253 (439)
106 PF05525 Branch_AA_trans: Bran 84.8 51 0.0011 34.0 21.0 222 165-406 4-251 (427)
107 PF10446 DUF2457: Protein of u 84.7 0.58 1.3E-05 47.2 2.1 8 109-116 226-233 (458)
108 PRK09950 putative transporter; 84.2 60 0.0013 34.3 20.3 160 163-329 83-273 (506)
109 PLN03223 Polycystin cation cha 82.6 1E+02 0.0022 36.2 18.3 22 343-364 1356-1377(1634)
110 TIGR00907 2A0304 amino acid pe 80.3 78 0.0017 32.9 17.9 47 225-271 289-336 (482)
111 KOG3660 Sodium-neurotransmitte 79.0 25 0.00054 38.1 11.9 120 290-409 220-353 (629)
112 KOG2466 Uridine permease/thiam 77.1 12 0.00026 38.7 8.3 158 235-399 339-514 (572)
113 KOG1277 Endosomal membrane pro 75.5 84 0.0018 32.5 13.6 10 172-181 293-302 (593)
114 COG1292 BetT Choline-glycine b 74.7 1.2E+02 0.0026 32.1 19.3 21 164-184 88-108 (537)
115 TIGR00842 bcct choline/carniti 72.7 1.3E+02 0.0027 31.4 18.8 93 163-255 36-154 (453)
116 PF03845 Spore_permease: Spore 72.5 78 0.0017 30.9 13.0 8 226-233 98-105 (320)
117 PHA02608 67 prohead core prote 70.5 1.6 3.4E-05 33.0 0.2 12 8-19 41-52 (80)
118 PRK10435 cadB lysine/cadaverin 68.7 98 0.0021 31.7 13.3 45 195-239 41-85 (435)
119 KOG0943 Predicted ubiquitin-pr 67.0 2.9 6.2E-05 47.2 1.4 21 162-182 1941-1961(3015)
120 TIGR01197 nramp NRAMP (natural 66.3 1.6E+02 0.0034 30.0 22.9 46 225-270 64-109 (390)
121 PF14851 FAM176: FAM176 family 66.3 5.7 0.00012 34.7 2.9 12 62-73 103-115 (153)
122 TIGR00909 2A0306 amino acid tr 64.5 1.7E+02 0.0036 29.8 19.5 46 226-271 265-310 (429)
123 TIGR00353 nrfE c-type cytochro 64.3 2.1E+02 0.0046 30.8 19.2 38 177-214 240-277 (576)
124 PHA02680 ORF090 IMV phosphoryl 64.1 31 0.00068 26.8 6.1 56 353-409 17-73 (91)
125 KOG1287 Amino acid transporter 61.2 69 0.0015 33.4 10.1 105 227-332 275-384 (479)
126 cd08762 Cyt_b561_CYBASC3 Verte 60.5 1.1E+02 0.0023 27.6 9.9 107 322-434 12-122 (179)
127 PF02468 PsbN: Photosystem II 60.4 7.5 0.00016 26.1 2.0 28 382-409 4-31 (43)
128 PRK13183 psbN photosystem II r 60.3 7.1 0.00015 26.5 1.8 29 380-408 5-33 (46)
129 TIGR00912 2A0309 spore germina 60.1 1.8E+02 0.004 28.7 14.5 50 170-221 15-64 (359)
130 PF02724 CDC45: CDC45-like pro 58.8 5.1 0.00011 43.4 1.6 15 158-172 306-320 (622)
131 KOG2652 RNA polymerase II tran 58.2 5 0.00011 39.2 1.2 6 60-65 321-326 (348)
132 PRK03356 L-carnitine/gamma-but 57.2 2.6E+02 0.0057 29.6 21.1 160 163-329 85-276 (504)
133 PLN02680 carbon-monoxide oxyge 57.0 1.4E+02 0.003 28.1 10.5 86 343-434 46-131 (232)
134 PHA02664 hypothetical protein; 56.1 9.1 0.0002 37.1 2.6 9 5-13 424-432 (534)
135 COG4145 PanF Na+/panthothenate 55.2 2.4E+02 0.0053 28.6 15.0 27 380-406 419-445 (473)
136 CHL00020 psbN photosystem II p 54.8 7.6 0.00016 26.0 1.3 27 382-408 4-30 (43)
137 PHA03048 IMV membrane protein; 51.1 68 0.0015 25.1 6.1 61 350-412 14-74 (93)
138 KOG3130 Uncharacterized conser 47.6 9 0.00019 38.3 1.1 15 105-119 393-407 (514)
139 PF10488 PP1c_bdg: Phosphatase 46.9 9.4 0.0002 36.9 1.1 39 34-73 41-79 (307)
140 KOG3533 Inositol 1,4,5-trispho 46.8 2.2E+02 0.0047 33.7 11.4 33 376-408 2415-2447(2706)
141 PRK10263 DNA translocase FtsK; 46.0 2.1E+02 0.0045 33.9 11.5 18 231-248 60-77 (1355)
142 TIGR00930 2a30 K-Cl cotranspor 45.8 5.3E+02 0.011 29.7 18.7 119 289-410 204-340 (953)
143 TIGR00905 2A0302 transporter, 45.1 3.7E+02 0.0081 27.8 19.1 45 227-271 270-314 (473)
144 KOG2023 Nuclear transport rece 43.8 10 0.00022 40.6 0.8 7 175-181 590-596 (885)
145 KOG0772 Uncharacterized conser 42.9 17 0.00036 37.7 2.2 6 11-16 95-100 (641)
146 PF02724 CDC45: CDC45-like pro 42.7 15 0.00032 39.9 1.9 7 393-399 557-563 (622)
147 KOG3130 Uncharacterized conser 42.7 14 0.00031 36.9 1.7 6 75-80 357-362 (514)
148 KOG1824 TATA-binding protein-i 42.3 15 0.00032 41.0 1.8 17 256-272 595-611 (1233)
149 TIGR01299 synapt_SV2 synaptic 39.9 5.7E+02 0.012 28.5 14.8 9 185-193 190-198 (742)
150 PF05297 Herpes_LMP1: Herpesvi 39.5 9.8 0.00021 36.4 0.0 15 314-328 80-94 (381)
151 KOG1291 Mn2+ and Fe2+ transpor 39.1 4.7E+02 0.01 27.3 19.2 47 225-271 89-135 (503)
152 PF08595 RXT2_N: RXT2-like, N- 38.7 14 0.0003 32.2 0.8 23 70-93 93-115 (149)
153 KOG1278 Endosomal membrane pro 38.2 4.7E+02 0.01 27.9 11.7 23 196-218 368-390 (628)
154 PRK10369 heme lyase subunit Nr 37.8 5.5E+02 0.012 27.7 14.1 33 178-210 295-327 (571)
155 PF11085 YqhR: Conserved membr 37.1 1.8E+02 0.0038 26.0 7.3 59 177-248 48-109 (173)
156 TIGR01773 GABAperm gamma-amino 36.4 4.9E+02 0.011 26.7 12.1 38 193-230 47-84 (452)
157 KOG3761 Choline transporter [L 36.1 8.5 0.00018 37.7 -1.0 150 161-323 49-202 (591)
158 KOG0526 Nucleosome-binding fac 36.1 29 0.00064 36.1 2.7 10 162-171 538-547 (615)
159 KOG2038 CAATT-binding transcri 36.0 24 0.00051 38.5 2.1 12 3-14 871-882 (988)
160 PF01566 Nramp: Natural resist 35.8 2.3E+02 0.0049 28.2 9.2 44 228-271 242-286 (358)
161 KOG3540 Beta amyloid precursor 35.2 26 0.00055 36.1 2.1 17 383-399 554-570 (615)
162 PRK15049 L-asparagine permease 35.0 5.5E+02 0.012 26.9 17.1 46 225-270 289-334 (499)
163 PRK10644 arginine:agmatin anti 34.9 5.1E+02 0.011 26.5 15.5 45 225-269 260-304 (445)
164 PHA02898 virion envelope prote 34.6 1.4E+02 0.003 23.4 5.5 63 350-414 14-77 (92)
165 TIGR03145 cyt_nit_nrfE cytochr 34.4 6.5E+02 0.014 27.5 19.2 41 170-210 280-325 (628)
166 PF11460 DUF3007: Protein of u 33.5 18 0.00038 29.3 0.6 11 178-188 9-19 (104)
167 PTZ00415 transmission-blocking 33.2 27 0.00059 41.5 2.1 18 360-377 641-658 (2849)
168 PRK11387 S-methylmethionine tr 33.2 5.6E+02 0.012 26.4 13.0 46 225-270 275-320 (471)
169 TIGR03750 conj_TIGR03750 conju 32.5 2.6E+02 0.0056 23.1 7.2 65 161-227 15-81 (111)
170 PF01235 Na_Ala_symp: Sodium:a 31.9 4.6E+02 0.01 27.0 10.6 37 234-270 302-338 (416)
171 TIGR01654 bact_immun_7tm bacte 31.5 7.1E+02 0.015 27.4 12.8 33 208-240 186-218 (679)
172 PF03169 OPT: OPT oligopeptide 31.3 5.1E+02 0.011 28.0 11.6 60 179-240 368-430 (624)
173 PF02990 EMP70: Endomembrane p 30.8 4.2E+02 0.0091 28.1 10.6 52 382-437 333-384 (521)
174 TIGR03428 ureacarb_perm permea 30.7 6.2E+02 0.013 26.1 19.4 46 226-271 284-329 (475)
175 PF09716 ETRAMP: Malarial earl 30.5 1.6E+02 0.0035 22.8 5.5 39 368-406 41-79 (84)
176 PF08016 PKD_channel: Polycyst 30.5 6E+02 0.013 25.9 17.9 32 343-378 361-392 (425)
177 PF10329 DUF2417: Region of un 30.3 4.7E+02 0.01 24.6 9.5 47 162-211 102-148 (232)
178 PTZ00415 transmission-blocking 29.7 31 0.00067 41.1 1.8 10 9-18 150-159 (2849)
179 KOG2141 Protein involved in hi 29.0 41 0.0009 36.5 2.5 7 264-270 447-453 (822)
180 PF05767 Pox_A14: Poxvirus vir 28.2 2E+02 0.0043 22.7 5.5 58 350-409 14-72 (92)
181 PF04148 Erv26: Transmembrane 27.9 4.9E+02 0.011 24.1 13.8 44 191-240 6-50 (211)
182 COG3476 Tryptophan-rich sensor 27.6 2.6E+02 0.0055 24.7 6.8 48 359-407 23-70 (161)
183 KOG4363 Putative growth respon 27.2 38 0.00083 31.9 1.7 13 206-218 221-233 (270)
184 PLN02810 carbon-monoxide oxyge 25.4 5.7E+02 0.012 24.0 10.5 86 342-433 45-130 (231)
185 KOG2897 DNA-binding protein YL 25.3 51 0.0011 32.9 2.3 16 297-312 301-316 (390)
186 PF12666 PrgI: PrgI family pro 25.2 1.9E+02 0.0042 22.5 5.3 26 161-186 14-39 (93)
187 PF09125 COX2-transmemb: Cytoc 24.1 1.1E+02 0.0025 19.7 2.9 21 191-211 13-35 (38)
188 COG4956 Integral membrane prot 23.7 4.5E+02 0.0098 25.9 8.2 25 168-194 7-31 (356)
189 PLN00150 potassium ion transpo 23.5 1.1E+03 0.023 26.5 13.9 31 290-320 417-447 (779)
190 KOG0468 U5 snRNP-specific prot 23.4 45 0.00098 36.1 1.6 7 12-18 17-23 (971)
191 KOG4364 Chromatin assembly fac 23.4 41 0.00088 36.1 1.3 13 10-22 519-531 (811)
192 KOG3241 Uncharacterized conser 23.3 60 0.0013 28.9 2.1 7 38-44 200-206 (227)
193 KOG4553 Uncharacterized conser 23.1 46 0.001 37.7 1.7 13 4-16 1303-1315(1398)
194 PF06609 TRI12: Fungal trichot 22.6 1E+03 0.022 25.9 16.0 48 357-407 416-463 (599)
195 PRK13875 conjugal transfer pro 22.3 6.2E+02 0.014 26.1 9.3 44 251-308 149-192 (440)
196 PF03344 Daxx: Daxx Family; I 21.7 31 0.00066 38.0 0.0 43 13-55 451-493 (713)
197 KOG2927 Membrane component of 21.5 1E+02 0.0023 30.6 3.6 8 174-181 131-138 (372)
198 PF11190 DUF2976: Protein of u 21.2 4.1E+02 0.009 20.8 7.8 24 210-233 43-66 (87)
199 PLN03140 ABC transporter G fam 21.1 1.5E+03 0.034 27.5 15.0 10 322-331 688-697 (1470)
200 KOG1824 TATA-binding protein-i 21.1 40 0.00087 37.8 0.7 11 59-70 345-355 (1233)
201 TIGR00955 3a01204 The Eye Pigm 21.0 7.3E+02 0.016 26.8 10.4 11 321-331 510-520 (617)
202 TIGR03745 conj_TIGR03745 integ 20.7 4.7E+02 0.01 21.3 6.6 22 211-232 60-81 (104)
203 COG4858 Uncharacterized membra 20.6 4.8E+02 0.01 23.7 7.2 23 196-218 126-148 (226)
204 PF05915 DUF872: Eukaryotic pr 20.5 4.7E+02 0.01 21.6 6.8 65 165-230 40-112 (115)
205 KOG3593 Predicted receptor-lik 20.2 90 0.002 30.2 2.8 7 12-18 272-278 (355)
No 1
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-40 Score=336.67 Aligned_cols=275 Identities=39% Similarity=0.692 Sum_probs=242.8
Q ss_pred CCCCCCHHHHHHHHHHhhhccccchhHHHHHhhCHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC-----HHHHHHH
Q 013584 160 ISRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLET-----YPDIGQA 233 (440)
Q Consensus 160 ~~~~~s~~~~~~~ii~~iIG~GiLslP~a~~~~G~~-g~illi~~g~l~~~t~~lL~~~~~~~~~~~s-----y~~i~~~ 233 (440)
.+|+.|++++.+++++.++|+|+|++|+|++++||+ |++++++++++++||+.+|++|.+.++...+ |+|++++
T Consensus 34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~ 113 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQA 113 (437)
T ss_pred cCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHH
Confidence 378899999999999999999999999999999998 8999999999999999999999987766555 9999999
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHH
Q 013584 234 AFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISA 313 (440)
Q Consensus 234 ~fG~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~ 313 (440)
+||+++++++.+++.+.+++++++|++..++++..+++....+.. .++ ...+.++++++.+|++++++++.++|+|.
T Consensus 114 afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~--~l~-~~~f~iif~~i~~~~s~lp~~~~l~~~S~ 190 (437)
T KOG1303|consen 114 AFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN--SLD-KQYFIIIFGLIVLPLSQLPNFHSLSYLSL 190 (437)
T ss_pred HhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--ccc-ceehhhhHHHHHHHHHHCCCcchhHHHHH
Confidence 999999999999999999999999999999999999987654321 233 46888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcccccCCCCC-CCCCCCCch---HHHHHHHHHHhhcccchHHHHhhccCCCChhhHHHHHHHH
Q 013584 314 GGVIASILVVLCLFWVGLVDQVNIHSK-GTPLNLATL---PVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLI 389 (440)
Q Consensus 314 ~~~i~~i~~ii~ii~~~~~~~~~~~~~-~~~~~~~~~---~~a~~~~~faf~g~~~i~~i~~emk~p~k~~~ai~~a~~i 389 (440)
++.+.+++..+++++.++.++.+.+.+ .....+... ++|+|++.|||+||.++|+|+..||+|.+++|++.+++.+
T Consensus 191 ~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~~~lis~~~ 270 (437)
T KOG1303|consen 191 VGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPKFKKALLISYII 270 (437)
T ss_pred HHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchhhhhHHHHHHHH
Confidence 999999999999999998887665333 333333333 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchhhhhcCC--CCchHH-HHHHHHHHHHHhhc
Q 013584 390 CTAMYAGVAYMGYTMFGESTLSQFTLNM--PQDLVA-TKIAVWTTILRAVM 437 (440)
Q Consensus 390 ~~~lY~~v~~~gy~~fG~~~~~~il~nl--p~~~~~-~~ia~~~~vi~~~t 437 (440)
++++|+.+|++||++||+.+.+|++.|+ |+.... .++++++.++.+++
T Consensus 271 ~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~ 321 (437)
T KOG1303|consen 271 VTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQ 321 (437)
T ss_pred HHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999 444433 44777777777654
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=1.2e-36 Score=314.35 Aligned_cols=274 Identities=19% Similarity=0.293 Sum_probs=224.1
Q ss_pred CCCCHHHHHHHHHHhhhccccchhHHHHHhhCHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhhHh
Q 013584 162 RQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGR 240 (440)
Q Consensus 162 ~~~s~~~~~~~ii~~iIG~GiLslP~a~~~~G~~-g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~~ 240 (440)
...+..++++|++|+++|+|+|++|++++++||+ |+++++++++++.|+.++|.++.. ..+..+|.|+++++||++++
T Consensus 58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~-~~~~~sY~~la~~~~G~~g~ 136 (467)
T PTZ00206 58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAAD-KTNIRTYEGVARVLLGPWGS 136 (467)
T ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHhCHHHH
Confidence 4578899999999999999999999999999998 999999999999999999999985 46678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCc-CccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHH
Q 013584 241 IAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSF-GGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIAS 319 (440)
Q Consensus 241 ~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i~~ 319 (440)
+++++.+.+.++++|++|+++.+|.+..+++...... .......+..+.++.+++++|++++|+++.++++|.++++++
T Consensus 137 ~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i 216 (467)
T PTZ00206 137 YYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFM 216 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998886532110 000011123344556678899999999999999999999887
Q ss_pred HHHHHHhhhhhcccccC--CC-----C-C-C--CCCC-CCchHHHHHHHHHHhhcccchHHHHhhccCC--CChhhHHHH
Q 013584 320 ILVVLCLFWVGLVDQVN--IH-----S-K-G--TPLN-LATLPVAIGLYGYCYSGHAVFPNIYTSMAQP--NQFPKVLIT 385 (440)
Q Consensus 320 i~~ii~ii~~~~~~~~~--~~-----~-~-~--~~~~-~~~~~~a~~~~~faf~g~~~i~~i~~emk~p--~k~~~ai~~ 385 (440)
++.++.+++....++.. .+ . . . ..++ ..+++.++++++|||.||.+++++++|||+| +|+.+++..
T Consensus 217 ~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~~ 296 (467)
T PTZ00206 217 VYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLASTI 296 (467)
T ss_pred HHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHHH
Confidence 77776666544432211 00 0 0 0 1122 2357899999999999999999999999985 468999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhhhhcCC-CCchHHHHHHHHHHHHHhh
Q 013584 386 CFLICTAMYAGVAYMGYTMFGESTLSQFTLNM-PQDLVATKIAVWTTILRAV 436 (440)
Q Consensus 386 a~~i~~~lY~~v~~~gy~~fG~~~~~~il~nl-p~~~~~~~ia~~~~vi~~~ 436 (440)
++.+++++|.++|++||++||+++++++++|+ |.++....++++..+++++
T Consensus 297 s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~ 348 (467)
T PTZ00206 297 AMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLF 348 (467)
T ss_pred HHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999 6666677777776666654
No 3
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.3e-36 Score=298.56 Aligned_cols=270 Identities=24% Similarity=0.366 Sum_probs=232.8
Q ss_pred CCCCCHHHHHHHHHHhhhccccchhHHHHHhhCHH-HHHHHHHHHHHHHHHHHHHHHhhhc-----CCCCCCHHHHH---
Q 013584 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDS-----EPGLETYPDIG--- 231 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~GiLslP~a~~~~G~~-g~illi~~g~l~~~t~~lL~~~~~~-----~~~~~sy~~i~--- 231 (440)
++..|..++..++++.++|+|+|++|+||+++||+ |.+..++.+.++.||.+.|++|... .....+|++..
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 45689999999999999999999999999999998 9999999999999999999998642 12234566554
Q ss_pred -------HHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhccc
Q 013584 232 -------QAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRD 304 (440)
Q Consensus 232 -------~~~fG~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~ 304 (440)
.+.+|+++|++++..+.+.++|.|++|+++.+++++.++...... . .+...+..+.....++++++|+
T Consensus 124 ~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~----~-~s~~~~i~~~~~~~lll~~Ir~ 198 (449)
T KOG1304|consen 124 MEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPG----V-LSVRLYILIQLPPLLLLNLIRN 198 (449)
T ss_pred HcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCC----C-ccHHHHHHHHHHHHHHHHHHHh
Confidence 455689999999999999999999999999999999999732211 1 1235777788888999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCChh---h
Q 013584 305 LTVLSYISAGGVIASILVVLCLFWVGLVDQVNIHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFP---K 381 (440)
Q Consensus 305 l~~l~~~s~~~~i~~i~~ii~ii~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k~~---~ 381 (440)
++.|..+|.++.+++++.++++++.-+.+.++.+..+...++.+++.++|+.+|||.|+.++.++.++||+|++|+ +
T Consensus 199 Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g~~g 278 (449)
T KOG1304|consen 199 LKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPGPFG 278 (449)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhcCCccc
Confidence 9999999999999888888777777666655555555667799999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhcCCCCchHHHHHHHHHHHHHhh
Q 013584 382 VLITCFLICTAMYAGVAYMGYTMFGESTLSQFTLNMPQDLVATKIAVWTTILRAV 436 (440)
Q Consensus 382 ai~~a~~i~~~lY~~v~~~gy~~fG~~~~~~il~nlp~~~~~~~ia~~~~vi~~~ 436 (440)
++..++.+++++|+.+|++||++||+++++.||+|+|+ ...+.....+.++.++
T Consensus 279 VLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ 332 (449)
T KOG1304|consen 279 VLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIF 332 (449)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 6677777777776654
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=2.4e-35 Score=300.66 Aligned_cols=271 Identities=30% Similarity=0.553 Sum_probs=229.8
Q ss_pred CCCCHHHHHHHHHHhhhccccchhHHHHHhhCHH-HHHHHHHHHHHHHHHHHHHHHhhhc---CCCCCCHHHHHHHHhhh
Q 013584 162 RQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDS---EPGLETYPDIGQAAFGT 237 (440)
Q Consensus 162 ~~~s~~~~~~~ii~~iIG~GiLslP~a~~~~G~~-g~illi~~g~l~~~t~~lL~~~~~~---~~~~~sy~~i~~~~fG~ 237 (440)
||.|+++++++++|+++|+|+|++|++++++||+ |+++++++++++.|+..+|.++... +++..+|.|++++++|+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 5789999999999999999999999999999998 9999999999999999999999865 35788999999999999
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHH
Q 013584 238 AGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVI 317 (440)
Q Consensus 238 ~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i 317 (440)
++++++.+++.+.+++.+++|+++.++.+..+++..... ...++..+.++.+++++|++++|+++.+++++.++++
T Consensus 81 ~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~----~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~ 156 (409)
T PF01490_consen 81 KGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD----LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLF 156 (409)
T ss_pred cccccccchheeccccccceeEEEeeeeeeccccccccc----ccccccccccccccccccccccchhhHHHHHhhhhhh
Confidence 999999999999999999999999999999998764321 1112356667788899999999999999999999988
Q ss_pred HHHHHHHHhhhhhccc---c-cCCCCC--CCCCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCChh---hHHHHHHH
Q 013584 318 ASILVVLCLFWVGLVD---Q-VNIHSK--GTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFP---KVLITCFL 388 (440)
Q Consensus 318 ~~i~~ii~ii~~~~~~---~-~~~~~~--~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k~~---~ai~~a~~ 388 (440)
++++.++.++...... . .+.... ....++.+++.++++++|||.||.++|++.+|||+|++++ +++..++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~ 236 (409)
T PF01490_consen 157 SIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMI 236 (409)
T ss_pred ccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhh
Confidence 8776422222221111 1 111111 1245667899999999999999999999999999999877 99999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhhhhcCCCCchHHHHHHHHHHHHHhh
Q 013584 389 ICTAMYAGVAYMGYTMFGESTLSQFTLNMPQDLVATKIAVWTTILRAV 436 (440)
Q Consensus 389 i~~~lY~~v~~~gy~~fG~~~~~~il~nlp~~~~~~~ia~~~~vi~~~ 436 (440)
+++++|+++|++||++||+++++|++.|+|+++....+++.+..++.+
T Consensus 237 ~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~ 284 (409)
T PF01490_consen 237 ICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLL 284 (409)
T ss_pred hhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhh
Confidence 999999999999999999999999999999988777777777766654
No 5
>PLN03074 auxin influx permease; Provisional
Probab=99.97 E-value=9.5e-31 Score=269.66 Aligned_cols=264 Identities=16% Similarity=0.177 Sum_probs=212.8
Q ss_pred CCCCCHHHHHHHHHHhhhccccchhHHHHHhhCHH-HHHHHHHHHHHHHHHHHHHHHhhh----cCCC-C-------CCH
Q 013584 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLD----SEPG-L-------ETY 227 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~GiLslP~a~~~~G~~-g~illi~~g~l~~~t~~lL~~~~~----~~~~-~-------~sy 227 (440)
.++.+..++.+++++..+|.|||++|+||+++||+ |++.+++.++++.||+++|.++.. +++. . .+|
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~ 122 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW 122 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence 56799999999999999999999999999999998 999999999999999999987642 2221 1 257
Q ss_pred HHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchh
Q 013584 228 PDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTV 307 (440)
Q Consensus 228 ~~i~~~~fG~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~ 307 (440)
.|++.+.+||+++.+..+..++.+++.|+.|++..++.+..+..... +..|.++..++++|++++|+++.
T Consensus 123 ~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~~~----------~~~~~~i~~~v~~~~~~i~sl~~ 192 (473)
T PLN03074 123 FEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLD----------KRTWTYIFGACCATTVFIPSFHN 192 (473)
T ss_pred HHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCCcC----------CCeEEeehHHHHHHHHHccCHHH
Confidence 88999999999999999999999999999999998888776632221 23566677778888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccccc--CCCCCCCCCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCChhhHHHH
Q 013584 308 LSYISAGGVIASILVVLCLFWVGLVDQV--NIHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLIT 385 (440)
Q Consensus 308 l~~~s~~~~i~~i~~ii~ii~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k~~~ai~~ 385 (440)
+++++.+++.++++..+.++........ +.+. ..+.++..++.++++++|||.||.++|+++++||||++|++++.+
T Consensus 193 l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~-~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~F~~~~~l 271 (473)
T PLN03074 193 YRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKH-SGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLA 271 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCchhHHHHHHHHHHHHHHhcccccHHHHHHhccChhcccchHHH
Confidence 9999999988766544444433332221 1111 112344566778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCch--hhhhcCCCCchHHHHHHHHHHHHHhh
Q 013584 386 CFLICTAMYAGVAYMGYTMFGESTL--SQFTLNMPQDLVATKIAVWTTILRAV 436 (440)
Q Consensus 386 a~~i~~~lY~~v~~~gy~~fG~~~~--~~il~nlp~~~~~~~ia~~~~vi~~~ 436 (440)
+..+++++|+.+|++||++||+++. ++.+.|+|++. ..+++.+++++.++
T Consensus 272 ~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~-~~~~~~~~~~i~~~ 323 (473)
T PLN03074 272 ATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSG-WRDAAVILMLIHQF 323 (473)
T ss_pred HHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCch-HHHHHHHHHHHHHH
Confidence 9999999999999999999999876 45677898765 45777887777665
No 6
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=99.95 E-value=1.2e-28 Score=232.33 Aligned_cols=263 Identities=24% Similarity=0.408 Sum_probs=227.0
Q ss_pred CCCCCHHHHHHHHHHhhhccccchhHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-------CCCCHHHHHHH
Q 013584 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEP-------GLETYPDIGQA 233 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~GiLslP~a~~~~G~~g~illi~~g~l~~~t~~lL~~~~~~~~-------~~~sy~~i~~~ 233 (440)
+.+++.+|+.+|+.|++-|-=|+++|+|+..+||.++..++.++.+|+||+.+|.+|+.... .+.+|..|+..
T Consensus 114 ~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA~~ 193 (524)
T KOG4303|consen 114 SEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYWSIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIADF 193 (524)
T ss_pred CCccHHHHHhhhhhhhhheeeEeccceeeeEcchhHHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999985432 14699999999
Q ss_pred Hhhhh-HhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHH
Q 013584 234 AFGTA-GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYIS 312 (440)
Q Consensus 234 ~fG~~-~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s 312 (440)
.+++. |+..+.+...+++..+|+.|+++.++.+..-+|..+.+ +.-|.+++.+.++|+.++|+++.++.+|
T Consensus 194 C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd--------~~sWm~i~~a~LLpc~FLk~Lk~VS~lS 265 (524)
T KOG4303|consen 194 CYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVD--------KASWMMITSASLLPCSFLKDLKIVSRLS 265 (524)
T ss_pred hcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCcc--------ccchhhhhhHHHhhhHHHHHHHHHHHHH
Confidence 88765 55888999999999999999999999999999977644 2467788999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhcccccCCCC--CCCCCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCChhhHHHHHHHHH
Q 013584 313 AGGVIASILVVLCLFWVGLVDQVNIHS--KGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLIC 390 (440)
Q Consensus 313 ~~~~i~~i~~ii~ii~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k~~~ai~~a~~i~ 390 (440)
..+.++-+++=++++.++...-.++.+ .....+..++|.++|+++|+|..|..+|++...|++|++|+..+.++-+..
T Consensus 266 f~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn~Ml~WsHIAA 345 (524)
T KOG4303|consen 266 FFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFNVMLKWSHIAA 345 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhHheeeeehHHHHH
Confidence 988887776666665555433223333 333557789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCchhhhhcCCCCchHHHHHHHHHH
Q 013584 391 TAMYAGVAYMGYTMFGESTLSQFTLNMPQDLVATKIAVWTT 431 (440)
Q Consensus 391 ~~lY~~v~~~gy~~fG~~~~~~il~nlp~~~~~~~ia~~~~ 431 (440)
.++-.++|.++|++||+.|+..|++|+|++.+...+-.++.
T Consensus 346 aVfK~~Fg~~~fLTf~~~TqevItnnLp~qsfk~~VN~fLV 386 (524)
T KOG4303|consen 346 AVFKVVFGMLGFLTFGELTQEVITNNLPNQSFKILVNLFLV 386 (524)
T ss_pred HHHHHHHHHheeeeechhhHHHHhcCCCccchhhhhhHHHH
Confidence 99999999999999999999999999998876555444443
No 7
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=99.95 E-value=7.8e-28 Score=241.94 Aligned_cols=259 Identities=24% Similarity=0.428 Sum_probs=214.3
Q ss_pred CCCCCHHHHHHHHHHhhhccccchhHHHHHhhCHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhhH
Q 013584 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAG 239 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~GiLslP~a~~~~G~~-g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~ 239 (440)
+++.|.+.++++++|+++|+|||++|+||+..|.+ |++++.++|+++.++.+++.+|..+.+. .+|+++++.++|+.+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~-~ty~~l~~~~~g~~g 81 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGE-RTYSSLGDLIFGKLG 81 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCC-CCHHHHHHHHcCCCc
Confidence 56789999999999999999999999999999987 9999999999999999999999965555 499999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccC--cCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHH
Q 013584 240 RIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLS--FGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVI 317 (440)
Q Consensus 240 ~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i 317 (440)
+....+.......+ +++|+++.+|.+..+....... .+.++.+++..+.++...+++|+++.|++..+++.|.++++
T Consensus 82 ~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~s~~ 160 (411)
T KOG1305|consen 82 KVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSALSLA 160 (411)
T ss_pred eeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 76666666555555 6999999999888655432211 11112344444678888899999999999999999999999
Q ss_pred HHHHHHHHhhhhhccccc---CCCC-CCCCCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCC--hhhHHHHHHHHHH
Q 013584 318 ASILVVLCLFWVGLVDQV---NIHS-KGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ--FPKVLITCFLICT 391 (440)
Q Consensus 318 ~~i~~ii~ii~~~~~~~~---~~~~-~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k--~~~ai~~a~~i~~ 391 (440)
+.++.++.+++..+.... .... .+....+.++..++++++|||.||.++.++++|||+|++ +.++...+...++
T Consensus 161 ~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~~~~ 240 (411)
T KOG1305|consen 161 SVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAIILAT 240 (411)
T ss_pred HHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHHHHHHH
Confidence 999888877777665332 1111 111222267899999999999999999999999999985 9999999999999
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhcCCCCch
Q 013584 392 AMYAGVAYMGYTMFGESTLSQFTLNMPQDL 421 (440)
Q Consensus 392 ~lY~~v~~~gy~~fG~~~~~~il~nlp~~~ 421 (440)
++|..+|++||+.||+.+.+|++.++++..
T Consensus 241 ~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~ 270 (411)
T KOG1305|consen 241 LIYLLTGLFGYLTFGDLVKGNLLHNYDSIL 270 (411)
T ss_pred HHHHHHHHhhhheecccchHHHHhcCCccc
Confidence 999999999999999999999999998754
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.95 E-value=9.9e-26 Score=229.17 Aligned_cols=258 Identities=22% Similarity=0.293 Sum_probs=219.1
Q ss_pred CCCCCHHHHHHHHHHhhhccccchhHHHHHhhCHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-CHHHHHHHHhhhh
Q 013584 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLE-TYPDIGQAAFGTA 238 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~GiLslP~a~~~~G~~-g~illi~~g~l~~~t~~lL~~~~~~~~~~~-sy~~i~~~~fG~~ 238 (440)
+++.+..+.+++++|++||+|+|++|++++..|+. +++++++++.++.++++++.++..+.+..+ ++.+++++.+|++
T Consensus 6 ~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~~ 85 (415)
T COG0814 6 KKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKK 85 (415)
T ss_pred cCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCcc
Confidence 67789999999999999999999999999999997 999999999999999999999998888874 9999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHH
Q 013584 239 GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIA 318 (440)
Q Consensus 239 ~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i~ 318 (440)
+++++++.+.+.+++.+++|.+..++.+..++++...... .. +....++.++++.++++.++...++..+.+....
T Consensus 86 ~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~---~~-r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~ 161 (415)
T COG0814 86 GGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNP---LP-RKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGK 161 (415)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCC---cc-hHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999876321110 22 3466677777788899999999999999887776
Q ss_pred HHHHHHHhhhhhcccccC--CCCCCC-CCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCC--hhhHHHHHHHHHHHH
Q 013584 319 SILVVLCLFWVGLVDQVN--IHSKGT-PLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ--FPKVLITCFLICTAM 393 (440)
Q Consensus 319 ~i~~ii~ii~~~~~~~~~--~~~~~~-~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k--~~~ai~~a~~i~~~l 393 (440)
+++.++..++.....+.. ...+.. ...+..+..++++++|||.+|.++|++.+||+++++ ++|++.++..+..++
T Consensus 162 v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~vl 241 (415)
T COG0814 162 VIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVL 241 (415)
T ss_pred HHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHHHH
Confidence 665554444432211111 111111 367788999999999999999999999999998765 999999999999999
Q ss_pred HHHHHHHHHHHhcCCchhhhhcCCCCchH
Q 013584 394 YAGVAYMGYTMFGESTLSQFTLNMPQDLV 422 (440)
Q Consensus 394 Y~~v~~~gy~~fG~~~~~~il~nlp~~~~ 422 (440)
|+.+++++|..+|+.+.++++.+.++...
T Consensus 242 yi~~~~~~~~~~~~~~~~~il~~~~~~~~ 270 (415)
T COG0814 242 YILVGFFVFGCFGSLVFGNILAAKEQNIS 270 (415)
T ss_pred HHHHHHHHHHhcCcccHHHHHHccCchHH
Confidence 99999999999999999999999987653
No 9
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.85 E-value=2e-20 Score=188.23 Aligned_cols=235 Identities=15% Similarity=0.237 Sum_probs=173.9
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhccccchhHHH-HHhhCHHHH--HHHHHHHHHHHHHHHHH---HHhhhcCCCCCCHHHH
Q 013584 157 EHPISRQSSYAQALLNGMNVLCGVGILSTPYA-AKEGGWFGL--LILVAFGVLSFYTGILL---RRCLDSEPGLETYPDI 230 (440)
Q Consensus 157 ~~~~~~~~s~~~~~~~ii~~iIG~GiLslP~a-~~~~G~~g~--illi~~g~l~~~t~~lL---~~~~~~~~~~~sy~~i 230 (440)
+.+.+|+++.+.++.++++++||+|||..|.+ .+++|.+|+ ++++++|+++...+.+. +.+.++.++...|
T Consensus 7 ~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ay--- 83 (479)
T KOG1287|consen 7 EVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAY--- 83 (479)
T ss_pred cccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhh---
Confidence 34558999999999999999999999999976 667788644 55567888776666555 5555455555455
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHH-HHHHHHHHhh-HhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhH
Q 013584 231 GQAAFGTAGRIAVSVILYAELYACC-IEYIILESDN-LSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVL 308 (440)
Q Consensus 231 ~~~~fG~~~~~l~~~~~~~~~~~~~-v~y~i~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l 308 (440)
..++||+..+++..|.-++....+. +.+.+.+++| +.+++|.+..+ +....++++++++.++++ |+..+
T Consensus 84 i~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p--------~~~~~lla~~~l~~lt~~-n~~~V 154 (479)
T KOG1287|consen 84 ISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVP--------RVASKLLAAALLVLLTLI-NSFSV 154 (479)
T ss_pred HHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCc--------hHHHHHHHHHHHHHHHHH-hhhhh
Confidence 8889999999888776666544443 6777778887 88998854322 234445566666666666 88888
Q ss_pred HHHHHHHHHHHHHHH---HHhhhhhccc----ccC----CCCCCCCCCCCchHHHHHHHHHHhhcccchHHHHhhccCCC
Q 013584 309 SYISAGGVIASILVV---LCLFWVGLVD----QVN----IHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPN 377 (440)
Q Consensus 309 ~~~s~~~~i~~i~~i---i~ii~~~~~~----~~~----~~~~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~ 377 (440)
++.+.++.++++.-+ +.+++.|+.. ..+ .+..+...+..++..|+....|||.||+.+..+.+|+|||+
T Consensus 155 ~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ 234 (479)
T KOG1287|consen 155 KWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPR 234 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCcc
Confidence 888887776665433 3334444331 111 11455567778899999999999999999999999999999
Q ss_pred C-hhhHHHHHHHHHHHHHHHHHHHHHH
Q 013584 378 Q-FPKVLITCFLICTAMYAGVAYMGYT 403 (440)
Q Consensus 378 k-~~~ai~~a~~i~~~lY~~v~~~gy~ 403 (440)
| +||++.+++.+++++|+++-+..+.
T Consensus 235 ktLP~Ai~isi~lvt~iYil~NvAy~~ 261 (479)
T KOG1287|consen 235 RTLPRAILISIPLVTVIYVLVNVAYFT 261 (479)
T ss_pred ccchHHHHHhhHHHHHHHHHhHhheeE
Confidence 9 9999999999999999999886543
No 10
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.83 E-value=1.9e-19 Score=182.13 Aligned_cols=234 Identities=17% Similarity=0.157 Sum_probs=180.7
Q ss_pred HHHHHHHhhhccccchhHHHHHhhCHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhhHhHHHHHHH
Q 013584 169 ALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIAVSVIL 247 (440)
Q Consensus 169 ~~~~ii~~iIG~GiLslP~a~~~~G~~-g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~~~l~~~~~ 247 (440)
++++++|++||+|+|++|.+++..|+. ++++++++++++.+++.++.++..+.|+..++.++++++|||++++++.+.+
T Consensus 2 ~~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~ 81 (381)
T TIGR00837 2 GALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSL 81 (381)
T ss_pred ceEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHH
Confidence 345778999999999999999888886 8888899999999999999999888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 013584 248 YAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCLF 327 (440)
Q Consensus 248 ~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i~~i~~ii~ii 327 (440)
++.++..+++|.+..++++..+++..... ... .....++..+++.++. .+..+...+++.+.++..+..++.++
T Consensus 82 ~~~~~~~~~ay~~~~~~~l~~~~~~~~~~----~~~-~~~~~~~~~~v~~~l~-~~G~~~~~~v~~i~~~~~l~~l~~~i 155 (381)
T TIGR00837 82 LFVLYILTYAYISGGGSILSRLIGEYFGF----PWS-ARAIVLIFTVLFGSFV-WLSTSAVDRITRVLIFGKIIAFALVF 155 (381)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHhcCC----Ccc-HHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998887643211 011 2233344444444444 44778888888877776665555544
Q ss_pred hhhccc-cc-CCCCC-CCCCCCCchHHHHHHHHHHhhcccchHHHHhhccCCC-ChhhHHHHHHHHHHHHHHHHHHHHHH
Q 013584 328 WVGLVD-QV-NIHSK-GTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPN-QFPKVLITCFLICTAMYAGVAYMGYT 403 (440)
Q Consensus 328 ~~~~~~-~~-~~~~~-~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~-k~~~ai~~a~~i~~~lY~~v~~~gy~ 403 (440)
+.+..+ +. +..+. ....++.++..+++...++|+.|.+++.+.+++++++ |++|++.++..+++++|+++.+....
T Consensus 156 i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g 235 (381)
T TIGR00837 156 SGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMG 235 (381)
T ss_pred HHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444332 11 11111 1123566788999999999988889999999997554 59999999999999999999888777
Q ss_pred HhcCC
Q 013584 404 MFGES 408 (440)
Q Consensus 404 ~fG~~ 408 (440)
.++.+
T Consensus 236 ~~~~~ 240 (381)
T TIGR00837 236 NLPRS 240 (381)
T ss_pred CCCHH
Confidence 76544
No 11
>PRK10483 tryptophan permease; Provisional
Probab=99.80 E-value=1.6e-17 Score=167.15 Aligned_cols=233 Identities=15% Similarity=0.176 Sum_probs=181.6
Q ss_pred CCCCCHHHHHHHHHHhhhccccchhHHHHHhhCHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhhH
Q 013584 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAG 239 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~GiLslP~a~~~~G~~-g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~ 239 (440)
+++.+.+.+++++.++.||+|+|++|.+.+.+|+. ++++++++++++.|++.++.|...+.++..++..++++.+||.|
T Consensus 8 ~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG~~g 87 (414)
T PRK10483 8 QTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGW 87 (414)
T ss_pred cCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHH
Confidence 56789999999999999999999999999999998 99999999999999999999998777777899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHH
Q 013584 240 RIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIAS 319 (440)
Q Consensus 240 ~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i~~ 319 (440)
+.+.++++.+.+|+.+++|+...++.+...++....+ .+ +..-.++.+++.-.+.+. ..+.+.+++.+-+...
T Consensus 88 ~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~-----i~-~~~~~llF~~~~~~iv~~-gt~~vd~~n~~l~~~~ 160 (414)
T PRK10483 88 NVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLN-----VP-ARAAGFGFALLVAFVVWL-STKAVSRMTAIVLGAK 160 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCC-----Cc-HHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998653211 11 234445555555555555 5577777776555555
Q ss_pred HHHHHHhhhhhcccccCC----CC-CCCCCCCCchHHHHHHHHHHhhcccchHHHHhhccC-CCChhhHHHHHHHHHHHH
Q 013584 320 ILVVLCLFWVGLVDQVNI----HS-KGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQ-PNQFPKVLITCFLICTAM 393 (440)
Q Consensus 320 i~~ii~ii~~~~~~~~~~----~~-~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~-p~k~~~ai~~a~~i~~~l 393 (440)
++.++.++.... .+.+. +. ......+..++.++++.++||+.|+++|.+.+.+++ ++|.+|++.++..+..++
T Consensus 161 i~~f~~~~~~l~-~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~Iplv~ 239 (414)
T PRK10483 161 VITFFLTFGSLL-GHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALAL 239 (414)
T ss_pred HHHHHHHHHHHH-hhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence 444433332221 12111 11 111222456889999999999999999999999885 567999999999999999
Q ss_pred HHHHHHHH
Q 013584 394 YAGVAYMG 401 (440)
Q Consensus 394 Y~~v~~~g 401 (440)
|++--...
T Consensus 240 yl~W~~~~ 247 (414)
T PRK10483 240 YTIWLLAT 247 (414)
T ss_pred HHHHHHHH
Confidence 99844433
No 12
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.79 E-value=2.6e-17 Score=166.55 Aligned_cols=233 Identities=21% Similarity=0.289 Sum_probs=178.9
Q ss_pred CCCHHHHHHHHHHhhhccccchhHHHHHhhCHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhhHhH
Q 013584 163 QSSYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRI 241 (440)
Q Consensus 163 ~~s~~~~~~~ii~~iIG~GiLslP~a~~~~G~~-g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~~~ 241 (440)
+.+.+.+++.++++.||+|+|++|.+.+.+|.. +++++++++.++.++++++.|+..+.++..+|.+++++.+||++++
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~ 81 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGI 81 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHH
Confidence 468899999999999999999999999999987 8899999999999999999999988888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHH
Q 013584 242 AVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASIL 321 (440)
Q Consensus 242 l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i~~i~ 321 (440)
+..+.+.+..++.+++|+...++.++.+++.... .... +....++..+++..+.+. ..+.+.+++..-+...+.
T Consensus 82 ~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~----~~~~-~~~~~~~f~~i~~~iv~~-g~~~v~~~n~~lv~~~i~ 155 (394)
T PF03222_consen 82 VIGISYLFLLYALLVAYISGGGSILSSLLGNQLG----TDLS-PWLSSLLFTIIFGGIVYF-GTKAVDRINRVLVFGMII 155 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC----CCCc-HHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999876431 1111 122223333333333333 444666666655544444
Q ss_pred HHHHhhhhhccc-cc-C-CCCCCCCCCCCchHHHHHHHHHHhhcccchHHHHhhcc-CCCChhhHHHHHHHHHHHHHHHH
Q 013584 322 VVLCLFWVGLVD-QV-N-IHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMA-QPNQFPKVLITCFLICTAMYAGV 397 (440)
Q Consensus 322 ~ii~ii~~~~~~-~~-~-~~~~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk-~p~k~~~ai~~a~~i~~~lY~~v 397 (440)
.++.+....+.+ +. . .+......+|...+.++++.++||..|.++|.+.+.++ |++|.+|++.++..+..++|++.
T Consensus 156 ~~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl~w 235 (394)
T PF03222_consen 156 SFIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYLLW 235 (394)
T ss_pred HHHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 443333333221 10 1 11122356788899999999999999999999999998 55679999999999999999876
Q ss_pred HHHH
Q 013584 398 AYMG 401 (440)
Q Consensus 398 ~~~g 401 (440)
-+..
T Consensus 236 ~~~~ 239 (394)
T PF03222_consen 236 VFSI 239 (394)
T ss_pred HHHH
Confidence 4433
No 13
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.78 E-value=7.1e-17 Score=162.26 Aligned_cols=232 Identities=16% Similarity=0.200 Sum_probs=176.4
Q ss_pred CCCCCHHHHHHHHHHhhhccccchhHHHHHhhCHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhhH
Q 013584 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAG 239 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~GiLslP~a~~~~G~~-g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~ 239 (440)
++|.+.+.+++++.++.||+|+|++|.+.+.+|++ ++++++++++++.|++.++.|...+.++..++..++++.+|+.|
T Consensus 6 ~~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g 85 (415)
T PRK09664 6 EKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTW 85 (415)
T ss_pred hhccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHH
Confidence 44558888999999999999999999999999998 99999999999999999999998888888899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHH
Q 013584 240 RIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIAS 319 (440)
Q Consensus 240 ~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i~~ 319 (440)
+.+.++++.+.+|+.+++|+...|+.+...++... +.... +....++.++++..+.+. ..+.+.+++.+-+...
T Consensus 86 ~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~----~~~i~-~~~~~llF~~~~~~~v~~-gt~~vd~~nr~l~~~~ 159 (415)
T PRK09664 86 NIISGITVAFVLYILTYAYISANGAIISETISMNL----GYHAN-PRIVGICTAIFVASVLWI-SSLAASRITSLFLGLK 159 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc----cCCCc-HHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999986411 11111 223345555555555555 5577777776555444
Q ss_pred HHHHHHhhhhhcccccCCC---CCCCCC----CCCchHHHHHHHHHHhhcccchHHHHhhccC-CCChhhHHHHHHHHHH
Q 013584 320 ILVVLCLFWVGLVDQVNIH---SKGTPL----NLATLPVAIGLYGYCYSGHAVFPNIYTSMAQ-PNQFPKVLITCFLICT 391 (440)
Q Consensus 320 i~~ii~ii~~~~~~~~~~~---~~~~~~----~~~~~~~a~~~~~faf~g~~~i~~i~~emk~-p~k~~~ai~~a~~i~~ 391 (440)
++.++..+... ..+.+.+ ...... .+..++.+++++++||+.|.++|.+...+++ ++|.+|++.++..+..
T Consensus 160 ii~f~~~~~~l-~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~IpL 238 (415)
T PRK09664 160 IISFVIVFGSF-FFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLAL 238 (415)
T ss_pred HHHHHHHHHHH-hhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 43333322222 1111111 000001 1235788999999999999999999999884 4679999999999999
Q ss_pred HHHHHHHH
Q 013584 392 AMYAGVAY 399 (440)
Q Consensus 392 ~lY~~v~~ 399 (440)
++|++.=.
T Consensus 239 viY~~W~~ 246 (415)
T PRK09664 239 VIYLFWLY 246 (415)
T ss_pred HHHHHHHH
Confidence 98865443
No 14
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.78 E-value=3.3e-17 Score=168.76 Aligned_cols=235 Identities=13% Similarity=0.069 Sum_probs=161.8
Q ss_pred CCCCCHHHHHHHHHHhhhccccchhHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhhHh
Q 013584 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGR 240 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~GiLslP~a~~~~G~~g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~~ 240 (440)
+|+++.++.+..+++.+||+|++.+|..+++.|...+..++++++.+...+..+.|...+.|.......++++ +|++.+
T Consensus 4 ~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~~~g 82 (435)
T PRK10435 4 AKKIGLFACTGVVAGNMMGSGIALLPANLASIGSIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISPAFG 82 (435)
T ss_pred CCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCcHHH
Confidence 7889999999999999999999999999888887666777777888788888888888777776676677888 899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhc--ccchhHHHHHHHHHHH
Q 013584 241 IAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWL--RDLTVLSYISAGGVIA 318 (440)
Q Consensus 241 ~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~--r~l~~l~~~s~~~~i~ 318 (440)
+++.|.+++.......++.+....++..++|....+ ....++..++++.+.++ +..+..+.++.+.++.
T Consensus 83 f~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~---------~~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~~~ 153 (435)
T PRK10435 83 FQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDP---------IPAGIACIAIVWVFTFVNMLGGTWVSRLTTIGLVL 153 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCh---------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999998887554444555566667777777643211 11111222222222333 2334444444433333
Q ss_pred HHHHHHHhhhhhccc-cc-CC--CC-CCCCCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCC-hhhHHHHHHHHHHH
Q 013584 319 SILVVLCLFWVGLVD-QV-NI--HS-KGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLITCFLICTA 392 (440)
Q Consensus 319 ~i~~ii~ii~~~~~~-~~-~~--~~-~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k-~~~ai~~a~~i~~~ 392 (440)
.++.++.+++.+..+ +. .+ +. .....++.++..++....|+|.|.+.+....+|+|||+| +||++..+..++++
T Consensus 154 ~li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv~i 233 (435)
T PRK10435 154 VLIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGI 233 (435)
T ss_pred HHHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHHHHH
Confidence 332222222222211 11 11 11 111234567888999999999999999999999999987 99999999999999
Q ss_pred HHHHHHHHHHHHh
Q 013584 393 MYAGVAYMGYTMF 405 (440)
Q Consensus 393 lY~~v~~~gy~~f 405 (440)
+|+++.++.....
T Consensus 234 lYil~~~~~~~~~ 246 (435)
T PRK10435 234 IYIAATQVISGMF 246 (435)
T ss_pred HHHHHHHHHHhcC
Confidence 9999988765444
No 15
>PRK10655 potE putrescine transporter; Provisional
Probab=99.77 E-value=8.2e-17 Score=165.97 Aligned_cols=235 Identities=15% Similarity=0.120 Sum_probs=160.7
Q ss_pred CCCCCHHHHHHHHHHhhhccccchhHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhhHh
Q 013584 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGR 240 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~GiLslP~a~~~~G~~g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~~ 240 (440)
+|+++.++++..+++.+||+|++.+|..+++.|..+++.+++.+++....+..+.|...+.|.......+.++.+|++.+
T Consensus 5 ~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~~~g 84 (438)
T PRK10655 5 SNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGTISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGKSGN 84 (438)
T ss_pred cCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCcchH
Confidence 68899999999999999999999999888888887777888888888888888888776666666667779999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhc--ccchhHHHHHHHHHHH
Q 013584 241 IAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWL--RDLTVLSYISAGGVIA 318 (440)
Q Consensus 241 ~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~--r~l~~l~~~s~~~~i~ 318 (440)
+++.|.+++.......+..+....++..+++... . .....++..++++.+..+ +..+...++..+.++.
T Consensus 85 f~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~--------~-~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~ 155 (438)
T PRK10655 85 FMANYTYGVSLLIANVAIAISAVGYGTELFGATL--------S-PVQICLATIGVLWLCTVANFGGARITGQISSVTVWG 155 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------c-hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 9999998877665555555555667766665321 0 111222222222222222 2444444444444433
Q ss_pred HHHHHHHhhhhhc--ccccCCCCCCCCCC---CCchHHHHHHHHHHhhcccchHHHHhhccCCCC-hhhHHHHHHHHHHH
Q 013584 319 SILVVLCLFWVGL--VDQVNIHSKGTPLN---LATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLITCFLICTA 392 (440)
Q Consensus 319 ~i~~ii~ii~~~~--~~~~~~~~~~~~~~---~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k-~~~ai~~a~~i~~~ 392 (440)
.++.++.+++.+. .+..++.....+.+ +.++..++....|+|.|++.+..+.+|+|||+| +||++..+..++++
T Consensus 156 ~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~ 235 (438)
T PRK10655 156 VIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGAAV 235 (438)
T ss_pred HHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHHHHH
Confidence 3332322222221 11111111111111 245667788899999999999999999999998 99999999999999
Q ss_pred HHHHHHHHHHHH
Q 013584 393 MYAGVAYMGYTM 404 (440)
Q Consensus 393 lY~~v~~~gy~~ 404 (440)
+|+++..+....
T Consensus 236 ~Y~l~~~~~~~~ 247 (438)
T PRK10655 236 IYIVSTNVIAGI 247 (438)
T ss_pred HHHHHHHHHHhC
Confidence 999987665433
No 16
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.77 E-value=4.7e-17 Score=161.56 Aligned_cols=236 Identities=16% Similarity=0.208 Sum_probs=183.1
Q ss_pred CCCCCCHHHHHHHHHHhhhcccc-chhHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhh
Q 013584 160 ISRQSSYAQALLNGMNVLCGVGI-LSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTA 238 (440)
Q Consensus 160 ~~~~~s~~~~~~~ii~~iIG~Gi-LslP~a~~~~G~~g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~ 238 (440)
.+|+++.++..++.++..||+|+ +....+++.+|+--++..+++|++.++-++.|+|+..+.|..+++.+++++.+|++
T Consensus 11 l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~lG~~ 90 (462)
T COG1113 11 LKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKYLGPW 90 (462)
T ss_pred hhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhcch
Confidence 47899999999999999999995 57888999999977788899999999999999999988899999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhh--hcccchhHH-HHHHHH
Q 013584 239 GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTC--WLRDLTVLS-YISAGG 315 (440)
Q Consensus 239 ~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~--~~r~l~~l~-~~s~~~ 315 (440)
+++++.|.+++.....+++.++..+.+++.++|..+ ++.++++..+++..+. .+|....+. |++.+-
T Consensus 91 Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~vP----------~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlIK 160 (462)
T COG1113 91 AGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDVP----------QWVFALAAVVLLLAVNLISVKVFGELEFWFALIK 160 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999874 2344444444443333 333333333 455555
Q ss_pred HHHHHHHHHH---hhhhhccccc---CCC-----CCCCCCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCC-hhhHH
Q 013584 316 VIASILVVLC---LFWVGLVDQV---NIH-----SKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVL 383 (440)
Q Consensus 316 ~i~~i~~ii~---ii~~~~~~~~---~~~-----~~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k-~~~ai 383 (440)
+++++..++. ++..++..+. +++ ...-+.++.++..++-+++|||.|.+.+-...+|-|||+| +||++
T Consensus 161 V~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkAi 240 (462)
T COG1113 161 VAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKAI 240 (462)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHHH
Confidence 5444433322 2222222211 111 1123678889999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 013584 384 ITCFLICTAMYAGVAYMGYTMF 405 (440)
Q Consensus 384 ~~a~~i~~~lY~~v~~~gy~~f 405 (440)
.-....+.++|+.-=++--..+
T Consensus 241 n~V~~RI~iFYvgsl~vi~~l~ 262 (462)
T COG1113 241 NSVIWRILIFYVGSLFVILSLY 262 (462)
T ss_pred hhhhHHHHHHHHHHHHHHheec
Confidence 9999999888876544443333
No 17
>PRK10249 phenylalanine transporter; Provisional
Probab=99.75 E-value=2.2e-16 Score=163.55 Aligned_cols=236 Identities=12% Similarity=0.172 Sum_probs=166.4
Q ss_pred CCCCCCHHHHHHHHHHhhhccccchhHH-HHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhh
Q 013584 160 ISRQSSYAQALLNGMNVLCGVGILSTPY-AAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTA 238 (440)
Q Consensus 160 ~~~~~s~~~~~~~ii~~iIG~GiLslP~-a~~~~G~~g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~ 238 (440)
.+|+++.++..+..++.+||+|++..|. +++.+|...++.+++.+++....+..++|+..+.|...+...+.++.+|+.
T Consensus 19 l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~~g~~ 98 (458)
T PRK10249 19 LHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGPF 98 (458)
T ss_pred hhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChH
Confidence 4788999999999999999999998875 577889877777788999999999999999988888888888999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHH
Q 013584 239 GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIA 318 (440)
Q Consensus 239 ~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i~ 318 (440)
.++++.|.+++.............+.++..+++..+ ...+.++..+++..+. .++.+..+++..+..+.
T Consensus 99 ~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~~~~~~~~l~~~lN-~~gv~~~~~i~~~~~~i 167 (458)
T PRK10249 99 AGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDVP----------TWIWAAAFFIIINAVN-LVNVRLYGETEFWFALI 167 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCc----------HHHHHHHHHHHHHHHH-HhcchhhhhHHHHHHHH
Confidence 999999999888766666777777777777765421 1222222222222222 23455454443322222
Q ss_pred HHHHHHHh----hh--hhcccc--cCCCC--C-C--CCCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCC-hhhHHH
Q 013584 319 SILVVLCL----FW--VGLVDQ--VNIHS--K-G--TPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLI 384 (440)
Q Consensus 319 ~i~~ii~i----i~--~~~~~~--~~~~~--~-~--~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k-~~~ai~ 384 (440)
.++.++.+ ++ .+.... .++.. . + .+.++.++..++....|+|.|.+.+..+.+|+|||+| +||++.
T Consensus 168 kv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai~ 247 (458)
T PRK10249 168 KVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAVN 247 (458)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHHH
Confidence 21111111 11 111110 11110 0 1 1245667889999999999999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 013584 385 TCFLICTAMYAGVAYMGYTMFG 406 (440)
Q Consensus 385 ~a~~i~~~lY~~v~~~gy~~fG 406 (440)
.++..++++|++..+......+
T Consensus 248 ~~~~~~~~~y~~~~~~~~~~~~ 269 (458)
T PRK10249 248 QVVYRILLFYIGSLVVLLALYP 269 (458)
T ss_pred HHHHHHHHHHHHHHHHHheecc
Confidence 9999999999886665544433
No 18
>PRK11021 putative transporter; Provisional
Probab=99.74 E-value=4e-16 Score=159.50 Aligned_cols=229 Identities=17% Similarity=0.222 Sum_probs=153.3
Q ss_pred CCHHHHHHHHHHhhhccccchhHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhhHhHH
Q 013584 164 SSYAQALLNGMNVLCGVGILSTPYA-AKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIA 242 (440)
Q Consensus 164 ~s~~~~~~~ii~~iIG~GiLslP~a-~~~~G~~g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~~~l 242 (440)
+++++++.+.+++|||+|++.+|.. .+.+|...+..+++.+++....+..+.|...+.|+........++.||++.+++
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf~ 80 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGRV 80 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHHH
Confidence 4789999999999999999999864 777787667777888888888888888888778877777888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHH
Q 013584 243 VSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILV 322 (440)
Q Consensus 243 ~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i~~i~~ 322 (440)
..|.+++.......+.......++..+++... + ....+.++..+++. +.-.+..+..+++..+..+..+.+
T Consensus 81 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~-~ln~~Gv~~~~~~~~~~~~~~~~i 151 (410)
T PRK11021 81 TGWLFLSVIPVGLPAALQIAAGFGQALFGWSS-----W---QLLLAELLTLALLW-LLNLRGASSSANLQTVIALLIVAL 151 (410)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCC-----c---hHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHH
Confidence 99988865444444444445556666554211 0 01111111111111 122234444444444332222221
Q ss_pred HHHhhhhhcccccCCCCC-CCCCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCC-hhhHHHHHHHHHHHHHHHHHHH
Q 013584 323 VLCLFWVGLVDQVNIHSK-GTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLITCFLICTAMYAGVAYM 400 (440)
Q Consensus 323 ii~ii~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k-~~~ai~~a~~i~~~lY~~v~~~ 400 (440)
++.++..+..+..++... ....++.++..++....|+|.|++.+..+.+|+|||+| +||++..+..+++++|+++.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 152 VVAIWWAGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred HHHHHHHcCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111111111 12345677889999999999999999999999999988 9999999999999999998865
Q ss_pred H
Q 013584 401 G 401 (440)
Q Consensus 401 g 401 (440)
.
T Consensus 232 ~ 232 (410)
T PRK11021 232 V 232 (410)
T ss_pred H
Confidence 3
No 19
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.74 E-value=3.4e-16 Score=162.02 Aligned_cols=236 Identities=14% Similarity=0.210 Sum_probs=167.3
Q ss_pred CCCCCCHHHHHHHHHHhhhccccchhH-HHHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhh
Q 013584 160 ISRQSSYAQALLNGMNVLCGVGILSTP-YAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTA 238 (440)
Q Consensus 160 ~~~~~s~~~~~~~ii~~iIG~GiLslP-~a~~~~G~~g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~ 238 (440)
.+|+++.++.++..++.+||+|++.+| .+++.+|..+++.+++.+++....+..+.|...+.|....+..++++.+|++
T Consensus 10 ~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~~g~~ 89 (452)
T TIGR01773 10 LPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPAALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDAIGRW 89 (452)
T ss_pred HhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcH
Confidence 379999999999999999999999999 5688899877778888888888888999999878888778889999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHH
Q 013584 239 GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIA 318 (440)
Q Consensus 239 ~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i~ 318 (440)
.++++.|.+++.....+.......+.++..+++..+ ...+.++..+++..+. .+..+..+++.....+.
T Consensus 90 ~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~~~~~~~~~~~~n-~~gv~~~~~~~~~~~~~ 158 (452)
T TIGR01773 90 AGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPDIP----------LWLFSLILTIVLTLTN-LYSVKSYGEFEFWFALI 158 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCc----------HHHHHHHHHHHHHHHH-HHhcchhhHHHHHHHHH
Confidence 999999999988777777777788888887765421 1122222222222222 22455555554433332
Q ss_pred HHHHHHHhhhh------hccccc---CC---CCCC--CCCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCC-hhhHH
Q 013584 319 SILVVLCLFWV------GLVDQV---NI---HSKG--TPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVL 383 (440)
Q Consensus 319 ~i~~ii~ii~~------~~~~~~---~~---~~~~--~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k-~~~ai 383 (440)
.++.++.+++. +..... ++ .... .+.++.++..++....|+|.|.+.+..+.+|+|||+| +||++
T Consensus 159 ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi 238 (452)
T TIGR01773 159 KVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITRAT 238 (452)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHHHH
Confidence 22222111111 111100 01 0001 1223446889999999999999999999999999998 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 013584 384 ITCFLICTAMYAGVAYMGYTMFG 406 (440)
Q Consensus 384 ~~a~~i~~~lY~~v~~~gy~~fG 406 (440)
..++..++++|++..++.....+
T Consensus 239 ~~~~~~~~~~y~l~~~~~~~~~p 261 (452)
T TIGR01773 239 NSVIWRIIVFYLGSIFIVVALLP 261 (452)
T ss_pred HHHHHHHHHHHHHHHHHHeeEeC
Confidence 99999999999987665544433
No 20
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.74 E-value=2.5e-16 Score=166.51 Aligned_cols=245 Identities=15% Similarity=0.130 Sum_probs=167.4
Q ss_pred CCCCCCHHHHHHHHHHhhhccccchhHHH-H-HhhCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhh
Q 013584 160 ISRQSSYAQALLNGMNVLCGVGILSTPYA-A-KEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGT 237 (440)
Q Consensus 160 ~~~~~s~~~~~~~ii~~iIG~GiLslP~a-~-~~~G~~g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~ 237 (440)
.+|+++.++.++..++.++|+|++.+|.. . ..+|...++.+++.|+.+...+..+.|...+.|...+...+.++.+|+
T Consensus 26 L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~~G~ 105 (557)
T TIGR00906 26 MKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTVGE 105 (557)
T ss_pred hhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHHhCc
Confidence 47899999999999999999999999864 3 457876556667777777777777777766665544444448889999
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccc----ccCc---Cccccch-hHHHHHHHHHHHHhhhhcccchhHH
Q 013584 238 AGRIAVSVILYAELYACCIEYIILESDNLSSLFPNA----HLSF---GGFYLNS-HHLFALMTTLAVLPTCWLRDLTVLS 309 (440)
Q Consensus 238 ~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~----~~~~---~~~~~~~-~~~~~ii~~liv~pl~~~r~l~~l~ 309 (440)
..++++.|.+++.....+.......+.++..++... .... ....+.. ...+.++..+++. ....+..+..+
T Consensus 106 ~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~-~ln~~Gik~s~ 184 (557)
T TIGR00906 106 LWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLA-VLLSFGVKESA 184 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHH-HHHHhchhHHH
Confidence 999999999998877666666666677766554321 0000 0000000 1122222222222 23335777777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccc-c-CCCC-------CCCCCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCC-h
Q 013584 310 YISAGGVIASILVVLCLFWVGLVDQ-V-NIHS-------KGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-F 379 (440)
Q Consensus 310 ~~s~~~~i~~i~~ii~ii~~~~~~~-~-~~~~-------~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k-~ 379 (440)
+++.+.++..++.++.+++.++... . ++.. +..+.++.++..++...+|+|.|.+.+..+.+|+|||+| +
T Consensus 185 ~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r~i 264 (557)
T TIGR00906 185 WVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAI 264 (557)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCccccc
Confidence 7777666665555554444544321 1 1110 112345567888999999999999999999999999998 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Q 013584 380 PKVLITCFLICTAMYAGVAYMGYTMF 405 (440)
Q Consensus 380 ~~ai~~a~~i~~~lY~~v~~~gy~~f 405 (440)
||++..++.+++++|++++++-..+-
T Consensus 265 P~aii~sl~i~~vlY~lv~~~l~~~v 290 (557)
T TIGR00906 265 PIGIVTSLLVCFVAYFLMSAALTLMM 290 (557)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999987654443
No 21
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.74 E-value=4e-16 Score=161.20 Aligned_cols=236 Identities=11% Similarity=0.127 Sum_probs=155.8
Q ss_pred CCCCCHHHHHHHHHHhhhccccchhHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhhHh
Q 013584 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGR 240 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~GiLslP~a~~~~G~~g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~~ 240 (440)
+|+++.+++++.+++.+||+|++.+|..+.+.|...+..+++.++.....+..+.|.....|........+++.+|++.+
T Consensus 7 ~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~g~~~g 86 (445)
T PRK10644 7 AHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFGPFLG 86 (445)
T ss_pred CCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHcCchHH
Confidence 78899999999999999999999999887776654444555666666666666777766666655555669999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhc--ccchhHHHHHHHHHHH
Q 013584 241 IAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWL--RDLTVLSYISAGGVIA 318 (440)
Q Consensus 241 ~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~--r~l~~l~~~s~~~~i~ 318 (440)
+++.|.+++.......+.......++..+++.... +....++..++++.++.+ +..+...++..+.++.
T Consensus 87 f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~~ 157 (445)
T PRK10644 87 YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKD---------PLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVL 157 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---------cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 99999988766555555555555666666653211 111112222222223333 3445555555544444
Q ss_pred HHHHHHHhhhhhcc--cccCCCCCCC---CCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCC-hhhHHHHHHHHHHH
Q 013584 319 SILVVLCLFWVGLV--DQVNIHSKGT---PLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLITCFLICTA 392 (440)
Q Consensus 319 ~i~~ii~ii~~~~~--~~~~~~~~~~---~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k-~~~ai~~a~~i~~~ 392 (440)
.++.++.++..++. +...+..... ...+..+..++....|+|.|++.+..+.+|+|||+| +||++..++.++++
T Consensus 158 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~~v 237 (445)
T PRK10644 158 ALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAV 237 (445)
T ss_pred HHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHHHHH
Confidence 43333333222221 1111111101 112345667788899999999999999999999998 99999999999999
Q ss_pred HHHHHHHHHHHHh
Q 013584 393 MYAGVAYMGYTMF 405 (440)
Q Consensus 393 lY~~v~~~gy~~f 405 (440)
+|+++.++....-
T Consensus 238 ~Y~l~~~~~~~~~ 250 (445)
T PRK10644 238 CYVLSSTAIMGMI 250 (445)
T ss_pred HHHHHHHHHHhCC
Confidence 9999988754443
No 22
>PRK15049 L-asparagine permease; Provisional
Probab=99.74 E-value=4.8e-16 Score=162.58 Aligned_cols=238 Identities=13% Similarity=0.125 Sum_probs=157.6
Q ss_pred CCCCCCHHHHHHHHHHhhhccccchhHH-HHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhh
Q 013584 160 ISRQSSYAQALLNGMNVLCGVGILSTPY-AAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTA 238 (440)
Q Consensus 160 ~~~~~s~~~~~~~ii~~iIG~GiLslP~-a~~~~G~~g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~ 238 (440)
.+|+++.++.++..++.+||+|++..|. +++.+|..+++.+++++++....+..++|+..+.|........+++.+|++
T Consensus 26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~~G~~ 105 (499)
T PRK15049 26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLGEK 105 (499)
T ss_pred hhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcH
Confidence 4788999999999999999999998875 688899877778888899889999999999988888888889999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHH
Q 013584 239 GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIA 318 (440)
Q Consensus 239 ~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i~ 318 (440)
.++++.|.+++.............+.++..+ +... ... ...+.++..+++..+. .+..+...++..+..+.
T Consensus 106 ~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~~-~~~------~~~~~~~~~~l~~~iN-~~gvk~~~~i~~~~~~i 176 (499)
T PRK15049 106 AAYVAGWMYFINWAMTGIVDITAVALYMHYW-GAFG-GVP------QWVFALAALTIVGTMN-MIGVKWFAEMEFWFALI 176 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCC-CCc------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 9999999998876555444444455554432 1111 000 1122222222222222 22344444444333322
Q ss_pred HHHHHHHhhhhhc---ccccC-------CCC--CC---CCCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCC-hhhH
Q 013584 319 SILVVLCLFWVGL---VDQVN-------IHS--KG---TPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKV 382 (440)
Q Consensus 319 ~i~~ii~ii~~~~---~~~~~-------~~~--~~---~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k-~~~a 382 (440)
.++.++.+++.++ ..... +.. .. .+.++.++..++...+|+|.|.+.+..+.+|+|||+| +||+
T Consensus 177 ki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~iPrA 256 (499)
T PRK15049 177 KVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKA 256 (499)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHHHHH
Confidence 2222222111111 11100 000 00 0122233445566799999999999999999999998 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 013584 383 LITCFLICTAMYAGVAYMGYTMFG 406 (440)
Q Consensus 383 i~~a~~i~~~lY~~v~~~gy~~fG 406 (440)
+..++..+.++|++..++.....+
T Consensus 257 i~~~~~~i~~~yi~~~~~~~~~~p 280 (499)
T PRK15049 257 INSVIWRIGLFYVGSVVLLVMLLP 280 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHheecc
Confidence 999999999999998876655544
No 23
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.73 E-value=6e-16 Score=161.00 Aligned_cols=236 Identities=10% Similarity=0.119 Sum_probs=157.8
Q ss_pred CCCCCCHHHHHHHHHHhhhccccchhHH-HHHhhCHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhh
Q 013584 160 ISRQSSYAQALLNGMNVLCGVGILSTPY-AAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGT 237 (440)
Q Consensus 160 ~~~~~s~~~~~~~ii~~iIG~GiLslP~-a~~~~G~~-g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~ 237 (440)
.+|+++.++.++..++.+||+|++..|. +++.+|.. .++.+++.+++....+..++|...+.|....+..+.++.+|+
T Consensus 12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~~g~ 91 (471)
T PRK11387 12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARYLGP 91 (471)
T ss_pred hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcCh
Confidence 3788999999999999999999998885 47888975 456667888888888888899888888777888889999999
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHH
Q 013584 238 AGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVI 317 (440)
Q Consensus 238 ~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i 317 (440)
..++++.|.+++.....+.......+.++..+++... ...+.++..+++..+. .+..+..+++.....+
T Consensus 92 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----------~~~~~~~~~~~~~~in-~~gvk~~~~~~~~~~~ 160 (471)
T PRK11387 92 ATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQVP----------VWPWCLLFCALIFGLN-VVSTRFFAEGEFWFSL 160 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCc----------HHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH
Confidence 9999999999887666655555555555555554321 1122222222222222 2244444443332222
Q ss_pred HHHHHHHHhhhhhc------c--cccC----CCC-CCC---CCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCC-hh
Q 013584 318 ASILVVLCLFWVGL------V--DQVN----IHS-KGT---PLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FP 380 (440)
Q Consensus 318 ~~i~~ii~ii~~~~------~--~~~~----~~~-~~~---~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k-~~ 380 (440)
..++.++.++..++ . .+.+ ++. ... +.+..++..++....|+|.|++.+..+.+|+|||+| +|
T Consensus 161 ~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iP 240 (471)
T PRK11387 161 IKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVIP 240 (471)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHHH
Confidence 22222211111110 0 0000 000 000 112234677888899999999999999999999998 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013584 381 KVLITCFLICTAMYAGVAYMGYTMFG 406 (440)
Q Consensus 381 ~ai~~a~~i~~~lY~~v~~~gy~~fG 406 (440)
|++..++.+++++|+++.++.....+
T Consensus 241 rAi~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 241 VAIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheecC
Confidence 99999999999999998876554444
No 24
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.73 E-value=7.6e-16 Score=160.11 Aligned_cols=234 Identities=12% Similarity=0.172 Sum_probs=160.1
Q ss_pred CCCCCCHHHHHHHHHHhhhccccchhHH-HHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhh
Q 013584 160 ISRQSSYAQALLNGMNVLCGVGILSTPY-AAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTA 238 (440)
Q Consensus 160 ~~~~~s~~~~~~~ii~~iIG~GiLslP~-a~~~~G~~g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~ 238 (440)
.+|+++.++.++..++.+||+|++..|. +++.+|...+..+++++++....+..++|.....+...++.+++++.+|+.
T Consensus 18 l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~~g~~ 97 (469)
T PRK11049 18 LRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGPW 97 (469)
T ss_pred hhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhCcH
Confidence 4889999999999999999999998875 788889855556677788888888888888755555556778899999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHH
Q 013584 239 GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIA 318 (440)
Q Consensus 239 ~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i~ 318 (440)
.++++.|.+++.......+.....+.++..++|... ...+.++..+++..+.. +..+..+++..+.++.
T Consensus 98 ~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~~----------~~~~~~~~~~~~~~iN~-~g~~~~~~i~~~~~~~ 166 (469)
T PRK11049 98 AGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDLS----------DWVASLAVVLLLLSLNL-ATVKMFGEMEFWFAMI 166 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----------HHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHH
Confidence 999999999987765555566677777777665321 11222222222222222 2445555555443333
Q ss_pred HHHHHHHhhhhhcc------cccC-----CCC--C---CCCCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCC-hhh
Q 013584 319 SILVVLCLFWVGLV------DQVN-----IHS--K---GTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPK 381 (440)
Q Consensus 319 ~i~~ii~ii~~~~~------~~~~-----~~~--~---~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k-~~~ 381 (440)
.++.++.+++.++. +... +.. . ..+.++.++..++....|+|.|++.+..+.+|+|||+| +||
T Consensus 167 kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPr 246 (469)
T PRK11049 167 KIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPR 246 (469)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHHHH
Confidence 33222222222211 0000 100 0 01234456889999999999999999999999999998 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013584 382 VLITCFLICTAMYAGVAYMGYTM 404 (440)
Q Consensus 382 ai~~a~~i~~~lY~~v~~~gy~~ 404 (440)
++..+.+.+.++|++..++.+..
T Consensus 247 ai~~~~~~~~~~y~l~~~~~~~~ 269 (469)
T PRK11049 247 AINSIPIRIIMFYVFALIVIMSV 269 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHeee
Confidence 99988888888998777765443
No 25
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.73 E-value=1e-15 Score=154.48 Aligned_cols=235 Identities=17% Similarity=0.176 Sum_probs=171.9
Q ss_pred CHHHHHHHHHHhhhccccchhHHHHHhhCHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhhHhHHH
Q 013584 165 SYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIAV 243 (440)
Q Consensus 165 s~~~~~~~ii~~iIG~GiLslP~a~~~~G~~-g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~~~l~ 243 (440)
+.+.+++.+.++.||+|+|++|.+...+|.. +++++++++.++.|+++++.|+..+.++..++.+++++.+|++++++.
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i~ 83 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLT 83 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHHH
Confidence 7789999999999999999999999999997 888888999989999999999876667677999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHH
Q 013584 244 SVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVV 323 (440)
Q Consensus 244 ~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i~~i~~i 323 (440)
.+.+.+..|..+++|+...++.+...+..+. +..++. ....++..++.....+. ..+.+.+++.+-+...++.+
T Consensus 84 ~~~y~fl~y~ll~AYisg~g~il~~~l~~~~----~~~i~~-~~~~l~F~~~~~~iv~~-g~~~v~~~n~~L~~~~ii~~ 157 (403)
T PRK15132 84 GFSMMFLMYALTAAYISGAGELLASSISDWT----GISMSP-TAGVLLFTLVAGGVVCV-GTSSVDLFNRFLFSAKIIFL 157 (403)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHhc----cCCCCh-HHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888877775421 111111 22333333333323333 45666666665444333333
Q ss_pred HHhhhhhcccccCCCCCC-CCCCCCchHHHHHHHHHHhhcccchHHHHhhccC-CCChhhHHHHHHHHHHHHHHHHHHHH
Q 013584 324 LCLFWVGLVDQVNIHSKG-TPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQ-PNQFPKVLITCFLICTAMYAGVAYMG 401 (440)
Q Consensus 324 i~ii~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~-p~k~~~ai~~a~~i~~~lY~~v~~~g 401 (440)
+.+.... ..+.+.+.-. .+.+...++.+++++++||+.|.++|.+...+++ ++|.+|++.++..+..++|++.-...
T Consensus 158 ~~~~~~l-~p~~~~~~L~~~~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl~W~~~~ 236 (403)
T PRK15132 158 VVMLALM-MPHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYIFWQLAT 236 (403)
T ss_pred HHHHHHH-HHhcCHHHHhcCCccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222211 1111111000 0112234899999999999999999999999985 45699999999999999999877766
Q ss_pred HHHhc
Q 013584 402 YTMFG 406 (440)
Q Consensus 402 y~~fG 406 (440)
...-+
T Consensus 237 lg~l~ 241 (403)
T PRK15132 237 LGSID 241 (403)
T ss_pred HhCCC
Confidence 65544
No 26
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.72 E-value=7.9e-16 Score=170.24 Aligned_cols=242 Identities=13% Similarity=0.137 Sum_probs=164.1
Q ss_pred CCCCCCHHHHHHHH-HHhhhccccchh-HHHHHhhCHH-HHHHHHHHHHHHHHHHHHHHHhhhc-CCCCCCHHHHHHHHh
Q 013584 160 ISRQSSYAQALLNG-MNVLCGVGILST-PYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDS-EPGLETYPDIGQAAF 235 (440)
Q Consensus 160 ~~~~~s~~~~~~~i-i~~iIG~GiLsl-P~a~~~~G~~-g~illi~~g~l~~~t~~lL~~~~~~-~~~~~sy~~i~~~~f 235 (440)
..++.+++++++.. +++|+|+|++.. ++.+.++|.. ++++++++++++..++..+.+.... .+....-..+..+.|
T Consensus 74 ~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisral 153 (953)
T TIGR00930 74 GAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISRSL 153 (953)
T ss_pred CCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 36889999999999 999999998765 5678899976 7788889999999999999888765 444444445688999
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHH
Q 013584 236 GTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGG 315 (440)
Q Consensus 236 G~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~ 315 (440)
|+..++.+.|++++.....+..|.+.+++++..+++...............++.+++.++++.+++. ..+...++..+.
T Consensus 154 Gp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In~~-Gvk~~ak~q~vl 232 (953)
T TIGR00930 154 GPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGISFA-GMEWENKAQVLF 232 (953)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 9999999999999988888899999999999888753211000000111122323222222222222 444444444433
Q ss_pred HHHHHHHHHHhhhhhcccccC--------CCC-----C---CCCCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCC-
Q 013584 316 VIASILVVLCLFWVGLVDQVN--------IHS-----K---GTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ- 378 (440)
Q Consensus 316 ~i~~i~~ii~ii~~~~~~~~~--------~~~-----~---~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k- 378 (440)
+++.++.++.+++.++..... +.. . .......++..+++++++||.|+....++.+|+|||+|
T Consensus 233 ~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgElKnP~r~ 312 (953)
T TIGR00930 233 LVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKDPQKA 312 (953)
T ss_pred HHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhccChhhh
Confidence 333333333333333221100 000 0 00111223778888899999999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 013584 379 FPKVLITCFLICTAMYAGVAYMGY 402 (440)
Q Consensus 379 ~~~ai~~a~~i~~~lY~~v~~~gy 402 (440)
+||++..++.+++++|+++.++..
T Consensus 313 IPratl~ai~i~~vlYllv~~~~~ 336 (953)
T TIGR00930 313 IPKGTLLAILTTTVVYLGSVVLFG 336 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999986433
No 27
>PRK10746 putative transport protein YifK; Provisional
Probab=99.72 E-value=1.3e-15 Score=157.88 Aligned_cols=236 Identities=15% Similarity=0.135 Sum_probs=164.7
Q ss_pred CCCCCCHHHHHHHHHHhhhccccchhH-HHHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhh
Q 013584 160 ISRQSSYAQALLNGMNVLCGVGILSTP-YAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTA 238 (440)
Q Consensus 160 ~~~~~s~~~~~~~ii~~iIG~GiLslP-~a~~~~G~~g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~ 238 (440)
.+|+++.++..+..++.+||+|++..| .+++.+|...++.++++|++....+..++|+....|...++...+++.+|+.
T Consensus 8 l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~~g~~ 87 (461)
T PRK10746 8 LQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSPF 87 (461)
T ss_pred HhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcH
Confidence 378899999999999999999999877 5688899855566678888888889999999888888888999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHH-
Q 013584 239 GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVI- 317 (440)
Q Consensus 239 ~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i- 317 (440)
+++++.|.+++.........+...+.++..++|..+ ...+.++..+++..+. .+..+..+.+.....+
T Consensus 88 ~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~~----------~~~~~~~~~~~~~~lN-~~gv~~~~~~e~~~~~~ 156 (461)
T PRK10746 88 FGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEMA----------QWIPALIAVALVALAN-LAAVRLYGEIEFWFAMI 156 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc----------hHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHH
Confidence 999999999988777777777788888888776432 1122222222222222 1233333333222111
Q ss_pred ---HHHHHHHHh---hhhhcccc---cCCC---CCC--CCCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCC-hhhH
Q 013584 318 ---ASILVVLCL---FWVGLVDQ---VNIH---SKG--TPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKV 382 (440)
Q Consensus 318 ---~~i~~ii~i---i~~~~~~~---~~~~---~~~--~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k-~~~a 382 (440)
.++.++++. ++.+..+. .++. ... .+.++.++..++....|+|.|.+.+....+|+|||+| +||+
T Consensus 157 ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~A 236 (461)
T PRK10746 157 KVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSA 236 (461)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHHH
Confidence 111111111 11111111 1111 111 1234567889999999999999999999999999998 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 013584 383 LITCFLICTAMYAGVAYMGYTMFG 406 (440)
Q Consensus 383 i~~a~~i~~~lY~~v~~~gy~~fG 406 (440)
+..++..+.++|++..++......
T Consensus 237 i~~~~~~i~~~yv~~~~~~~~~~p 260 (461)
T PRK10746 237 VGKVLWRILIFYVGAIFVIVTIFP 260 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHeeeeC
Confidence 999999999999997665544443
No 28
>PRK10836 lysine transporter; Provisional
Probab=99.71 E-value=2.3e-15 Score=157.39 Aligned_cols=236 Identities=11% Similarity=0.142 Sum_probs=155.0
Q ss_pred CCCCCCHHHHHHHHHHhhhccccchhHH-HHHhhCHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhh
Q 013584 160 ISRQSSYAQALLNGMNVLCGVGILSTPY-AAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGT 237 (440)
Q Consensus 160 ~~~~~s~~~~~~~ii~~iIG~GiLslP~-a~~~~G~~-g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~ 237 (440)
.+|+++.++.++..++.+||+|++.+|. +.+++|.. .++.++++|+++...+..++|...+.|.........++.+|+
T Consensus 13 l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~~~g~ 92 (489)
T PRK10836 13 LRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEE 92 (489)
T ss_pred ccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHcCh
Confidence 4789999999999999999999999986 68888986 577778999999999999999998888888888889999999
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHH
Q 013584 238 AGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVI 317 (440)
Q Consensus 238 ~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i 317 (440)
..++++.|.+++...............++..+++..+ . ..+.++..+++..+.+ +..+..+.+.....+
T Consensus 93 ~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~~~----~------~~~~~~~~~~~~~lN~-~gv~~~~~~~~~~~~ 161 (489)
T PRK10836 93 GFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTP----G------WIWSALFLGVIFLLNY-ISVRGFGEAEYWFSL 161 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCc----h------HHHHHHHHHHHHHHHH-HcchhhhhhHHHHHH
Confidence 9999999998876544444333444444555544321 1 1122222222222222 234433333222221
Q ss_pred HHHHH----HH--Hhhhhhcccc---c---CCCCCCC--CCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCC-hhhH
Q 013584 318 ASILV----VL--CLFWVGLVDQ---V---NIHSKGT--PLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKV 382 (440)
Q Consensus 318 ~~i~~----ii--~ii~~~~~~~---~---~~~~~~~--~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k-~~~a 382 (440)
..++. ++ .++..+.... . ++..... ..++.++..++....|+|.|++.+..+.+|+|||+| +||+
T Consensus 162 ~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrA 241 (489)
T PRK10836 162 IKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRA 241 (489)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHHHH
Confidence 11111 11 1111221111 0 1111111 112334444555677999999999999999999998 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 013584 383 LITCFLICTAMYAGVAYMGYTMFG 406 (440)
Q Consensus 383 i~~a~~i~~~lY~~v~~~gy~~fG 406 (440)
+..++.+++++|++..++.....+
T Consensus 242 i~~~~~~v~~~Yvl~~~~~~~~vp 265 (489)
T PRK10836 242 VRQVFWRILLFYVFAILIISLIIP 265 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHheecC
Confidence 999999999999999776555443
No 29
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.71 E-value=2.1e-15 Score=156.17 Aligned_cols=230 Identities=12% Similarity=0.144 Sum_probs=161.3
Q ss_pred CCCCCCHHHHHHHHHHhhhccccchhHH-HHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhh
Q 013584 160 ISRQSSYAQALLNGMNVLCGVGILSTPY-AAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTA 238 (440)
Q Consensus 160 ~~~~~s~~~~~~~ii~~iIG~GiLslP~-a~~~~G~~g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~ 238 (440)
.+|+++.++.++..++.+||+|+|..|. +++.+|...++.+++++++....+..++|...+.|...++...+++.+|+.
T Consensus 10 l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~~g~~ 89 (456)
T PRK10238 10 LKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGSF 89 (456)
T ss_pred hhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcH
Confidence 4899999999999999999999998885 577888755566678888888888999999888888888888899999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHH
Q 013584 239 GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIA 318 (440)
Q Consensus 239 ~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i~ 318 (440)
.++++.|.+++.....+.......+.++..++|+.+ ...+.++..+++..+.+ ...+..+.+..+..+.
T Consensus 90 ~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----------~~~~~~i~~~~~~~lN~-~gv~~~~~~~~~~~~i 158 (456)
T PRK10238 90 AGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEIP----------TWVSAAVFFVVINAINL-TNVKVFGEMEFWFAII 158 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCc----------HHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHH
Confidence 999999999998888888888888888887765421 11222222222222222 2444444444433333
Q ss_pred HHHHHHHhhh------hhccccc--CCCC--CC---CCCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCC-hhhHHH
Q 013584 319 SILVVLCLFW------VGLVDQV--NIHS--KG---TPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLI 384 (440)
Q Consensus 319 ~i~~ii~ii~------~~~~~~~--~~~~--~~---~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k-~~~ai~ 384 (440)
.++.++.+++ .+..... .+.. .. .+.++.++..++....|+|.|.+.+....+|+|||+| +||++.
T Consensus 159 ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi~ 238 (456)
T PRK10238 159 KVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATN 238 (456)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHHHH
Confidence 2222211111 1110110 0100 00 1223346667888899999999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 013584 385 TCFLICTAMYAGVAYM 400 (440)
Q Consensus 385 ~a~~i~~~lY~~v~~~ 400 (440)
.++..+.++|++...+
T Consensus 239 ~~~~~i~~~y~~~~~~ 254 (456)
T PRK10238 239 QVIYRILIFYIGSLAV 254 (456)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998888776444
No 30
>TIGR00909 2A0306 amino acid transporter.
Probab=99.71 E-value=1.5e-15 Score=156.23 Aligned_cols=243 Identities=15% Similarity=0.186 Sum_probs=169.7
Q ss_pred CCCCCHHHHHHHHHHhhhccccchhHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhhH
Q 013584 161 SRQSSYAQALLNGMNVLCGVGILSTPYA-AKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAG 239 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~GiLslP~a-~~~~G~~g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~ 239 (440)
+|+++.++.++..++.++|+|++.+|.. ...+|...++.+++.+++....+..+.|...+.|+.....+..++.+||+.
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~ 81 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGELT 81 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCcHH
Confidence 6889999999999999999999999965 455676566666777777777788888887777766666677999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccc----hh-HHHHHHHHHHHHhhhhcccchhHHHHHHH
Q 013584 240 RIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLN----SH-HLFALMTTLAVLPTCWLRDLTVLSYISAG 314 (440)
Q Consensus 240 ~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~----~~-~~~~ii~~liv~pl~~~r~l~~l~~~s~~ 314 (440)
++++.|.+++.....+..+....++++..+++....+.+.+... .+ ..+..+..++++-....+..+..++++.+
T Consensus 82 g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~~~v 161 (429)
T TIGR00909 82 AFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKVNDI 161 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 99999999988877888888888888887775321111111000 00 00111122222222233467777777776
Q ss_pred HHHHHHHHHHHhhhhhccc-c-cCCCCCCCCCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCC-hhhHHHHHHHHHH
Q 013584 315 GVIASILVVLCLFWVGLVD-Q-VNIHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLITCFLICT 391 (440)
Q Consensus 315 ~~i~~i~~ii~ii~~~~~~-~-~~~~~~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k-~~~ai~~a~~i~~ 391 (440)
..+..++.++.++..+..+ + .++.+ ..+.++.++..++...+|+|.|++.+..+.+|+|||+| +||++..++.++.
T Consensus 162 ~~~~~i~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~~~~ 240 (429)
T TIGR00909 162 LVVLKVAALLLFAALGAIHFASNNYTP-FMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIVVT 240 (429)
T ss_pred HHHHHHHHHHHhhhHHHhhCcHHhcCC-CCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHHHHH
Confidence 6655554444333333322 1 11111 12334567888899999999999999999999999987 9999999999999
Q ss_pred HHHHHHHHHHHHH
Q 013584 392 AMYAGVAYMGYTM 404 (440)
Q Consensus 392 ~lY~~v~~~gy~~ 404 (440)
++|+++.+.....
T Consensus 241 v~Yil~~~~~~~~ 253 (429)
T TIGR00909 241 LLYVLVAAVILGA 253 (429)
T ss_pred HHHHHHHHHHhcC
Confidence 9999998765543
No 31
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.71 E-value=3.6e-15 Score=154.63 Aligned_cols=232 Identities=14% Similarity=0.184 Sum_probs=161.9
Q ss_pred CCCCCCHHHHHHHHHHhhhccccchhHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhh
Q 013584 160 ISRQSSYAQALLNGMNVLCGVGILSTPYA-AKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTA 238 (440)
Q Consensus 160 ~~~~~s~~~~~~~ii~~iIG~GiLslP~a-~~~~G~~g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~ 238 (440)
.+|+++.++.++..++.+||+|++.+|.. ++.+|...++.+++.+++....+..+.|...+.|.......+.++.+|+.
T Consensus 7 l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~~G~~ 86 (457)
T PRK10580 7 LKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLGPL 86 (457)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcH
Confidence 47889999999999999999999999864 77888766777788888888889999999888887778888899999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHH
Q 013584 239 GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIA 318 (440)
Q Consensus 239 ~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i~ 318 (440)
.++++.|.+++.....+.......+.++..+++..+ ...+.++..+++..+. .+..+..+.+..+..+.
T Consensus 87 ~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~ln-~~gv~~~~~~~~~~~~~ 155 (457)
T PRK10580 87 AGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVP----------HWIWVLSVVLIICAVN-LMSVKVFGELEFWFSFF 155 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----------hHHHHHHHHHHHHHHH-HccchhHHHHHHHHHHH
Confidence 999999999887766666666677777777665432 1222222222222222 23455555544433322
Q ss_pred HHHHHHHhh-------hhhcccc---cCCC--CC---CCCCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCC-hhhH
Q 013584 319 SILVVLCLF-------WVGLVDQ---VNIH--SK---GTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKV 382 (440)
Q Consensus 319 ~i~~ii~ii-------~~~~~~~---~~~~--~~---~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k-~~~a 382 (440)
.+..++.++ ..+..+. .+.. .. ..+.++.++..++....|+|.|.+.+..+.+|+|||+| +||+
T Consensus 156 ~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iPrA 235 (457)
T PRK10580 156 KVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRA 235 (457)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHHHH
Confidence 222211111 1111110 0110 11 11233456778889999999999999999999999998 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013584 383 LITCFLICTAMYAGVAYMGY 402 (440)
Q Consensus 383 i~~a~~i~~~lY~~v~~~gy 402 (440)
+..+..+++++|++..++..
T Consensus 236 i~~~~~~~~~~y~~~~~~~~ 255 (457)
T PRK10580 236 INSVPMRILVFYVGTLFVIM 255 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99998889999988866543
No 32
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.69 E-value=7.4e-15 Score=154.01 Aligned_cols=239 Identities=16% Similarity=0.201 Sum_probs=155.2
Q ss_pred CCCCCCCHHHHHHHHHHhhhccccchhHHH-HHhhCHHHH--HHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHh
Q 013584 159 PISRQSSYAQALLNGMNVLCGVGILSTPYA-AKEGGWFGL--LILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAF 235 (440)
Q Consensus 159 ~~~~~~s~~~~~~~ii~~iIG~GiLslP~a-~~~~G~~g~--illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~f 235 (440)
+.+|+.+.++++...++.++|+|++.+|.. ++.+|..|. +.+++++++....+..+.|.....|.........++.+
T Consensus 39 ~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~~~~~ 118 (501)
T TIGR00911 39 ALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYILEVF 118 (501)
T ss_pred ccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhHHhHh
Confidence 357899999999999999999999999864 677786554 44466777777777788888766666556666689999
Q ss_pred hhhHhHHHHHHHHHH-HHHHHHHHHHHHHhhH-hhhccccccCcCccccchhHHHHHHHHHHHHhhhhc--ccchhHHHH
Q 013584 236 GTAGRIAVSVILYAE-LYACCIEYIILESDNL-SSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWL--RDLTVLSYI 311 (440)
Q Consensus 236 G~~~~~l~~~~~~~~-~~~~~v~y~i~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~--r~l~~l~~~ 311 (440)
|+..+++..|..++. ..+.+..+....+.++ ..+++....+ . ....++..++++.++.+ +.++...++
T Consensus 119 g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~--~------~~~~~i~~~~i~~~~~ln~~Gvk~~~~~ 190 (501)
T TIGR00911 119 GPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVP--E------WAIRLVAVLCVLLLTLVNCLSVKWATRV 190 (501)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--h------HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 999999988876542 2333444555555554 3344432111 0 11112222222222222 355555555
Q ss_pred HHHHHHHHHHHHHHhhhhhcc---cc-c-CCCCC----CCCCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCC-hhh
Q 013584 312 SAGGVIASILVVLCLFWVGLV---DQ-V-NIHSK----GTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPK 381 (440)
Q Consensus 312 s~~~~i~~i~~ii~ii~~~~~---~~-~-~~~~~----~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k-~~~ 381 (440)
..+..+..++.++.+++.++. .+ . ..++. ....++.++..++....|+|.|++.+..+.+|+|||+| +||
T Consensus 191 ~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPr 270 (501)
T TIGR00911 191 QDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPI 270 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHH
Confidence 555544444333333222221 11 0 01111 11123456788899999999999999999999999988 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 013584 382 VLITCFLICTAMYAGVAYMGYTMF 405 (440)
Q Consensus 382 ai~~a~~i~~~lY~~v~~~gy~~f 405 (440)
++..+..+++++|+++.++.....
T Consensus 271 Ai~~s~~~v~~~Y~l~~~a~~~~~ 294 (501)
T TIGR00911 271 AIIISMPIVTFIYVLTNIAYFTVL 294 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999976655444
No 33
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.68 E-value=3.7e-15 Score=149.66 Aligned_cols=236 Identities=14% Similarity=0.222 Sum_probs=170.8
Q ss_pred CCCHHHHHHHHHHhhhccccchhHHHHHh-hCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhhHhH
Q 013584 163 QSSYAQALLNGMNVLCGVGILSTPYAAKE-GGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRI 241 (440)
Q Consensus 163 ~~s~~~~~~~ii~~iIG~GiLslP~a~~~-~G~~g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~~~ 241 (440)
++|.+|.++.++++++|+|++.+|....+ +|.-+++..++.++++...+.++.+...+.|+. +..++.++++||+.++
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~~g~ 80 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK-NFSEILSKYLGKILGR 80 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHHHHH
Confidence 58999999999999999999999987554 454477777888888888888888888788875 8999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhhc-cccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHH
Q 013584 242 AVSVILYAELYACCIEYIILESDNLSSLF-PNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASI 320 (440)
Q Consensus 242 l~~~~~~~~~~~~~v~y~i~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i~~i 320 (440)
++.+.+.+.....+.......++.+...+ +..+ .....+..+++.-....+.++.+.+++.+.+...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp-----------~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i 149 (359)
T TIGR00912 81 LLSILFILYFFLIAAYLIRIFADFIKTYLLPRTP-----------IIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFL 149 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----------HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 99998888877777777777777776543 2221 12222222222222333577777777776655544
Q ss_pred HHH-HHhhhhhcccccCCC--CCCCCCCCCchHHHHH-HHHHHhhcccchHHHHhhccCCCChhhHHHHHHHHHHHHHHH
Q 013584 321 LVV-LCLFWVGLVDQVNIH--SKGTPLNLATLPVAIG-LYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAG 396 (440)
Q Consensus 321 ~~i-i~ii~~~~~~~~~~~--~~~~~~~~~~~~~a~~-~~~faf~g~~~i~~i~~emk~p~k~~~ai~~a~~i~~~lY~~ 396 (440)
+.. +.++.... +..+.+ .+....++..+..+.- ...++|.|.+.+..+..++|||+|.+|++..+..+++++|++
T Consensus 150 ~~~~~il~~~~~-~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k~~~~~~~~~~~ly~~ 228 (359)
T TIGR00912 150 ILFILVLILLAP-KLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSIIKAIIIGVLLYIL 228 (359)
T ss_pred HHHHHHHHHHhc-ccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHH
Confidence 441 22222221 111111 1222345556555554 788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCchh
Q 013584 397 VAYMGYTMFGESTLS 411 (440)
Q Consensus 397 v~~~gy~~fG~~~~~ 411 (440)
+.+.....+|.+..+
T Consensus 229 ~~~~~i~~lg~~~~~ 243 (359)
T TIGR00912 229 TTFVSISVFGGNVTK 243 (359)
T ss_pred HHHHHHheecHHHhh
Confidence 999999999865433
No 34
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.67 E-value=9.8e-15 Score=152.22 Aligned_cols=229 Identities=12% Similarity=0.096 Sum_probs=157.8
Q ss_pred CCCCCHHHHHHHHHHhhhccccchhH-HHHHhhCHHH-HHHHHHHHHHHHHHHHHHHHhhhcCC-CCCCHHHHHHHHhhh
Q 013584 161 SRQSSYAQALLNGMNVLCGVGILSTP-YAAKEGGWFG-LLILVAFGVLSFYTGILLRRCLDSEP-GLETYPDIGQAAFGT 237 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~GiLslP-~a~~~~G~~g-~illi~~g~l~~~t~~lL~~~~~~~~-~~~sy~~i~~~~fG~ 237 (440)
+|+++.++.++..++.+||+|++..| .+++.+|..+ ++.+++.++++...+..+.|+....| ....|..++++.+|+
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~ 80 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDP 80 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCc
Confidence 36799999999999999999999876 5688889764 56677888888888888899887777 345788899999999
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHH
Q 013584 238 AGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVI 317 (440)
Q Consensus 238 ~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i 317 (440)
..++++.|.+++.....+.......+.++..+.+... ...+..+..+++..+ -.+..+..++++.+..+
T Consensus 81 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~i-n~~gv~~~~~~~~~~~~ 149 (478)
T TIGR00913 81 AFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKVN----------PAVWIAIFYVFIVII-NLFGVKGYGEAEFWFSS 149 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC----------HHHHHHHHHHHHHHH-HHhcchHHHHHHHHHHH
Confidence 9999999999988777777777777777776554221 112222222222222 23355555555543332
Q ss_pred HHHHHHHHhhhh------hcc-ccc--C---CCCCC-CC-C----CCCchHHHHHHHHHHhhcccchHHHHhhccCCCC-
Q 013584 318 ASILVVLCLFWV------GLV-DQV--N---IHSKG-TP-L----NLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ- 378 (440)
Q Consensus 318 ~~i~~ii~ii~~------~~~-~~~--~---~~~~~-~~-~----~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k- 378 (440)
..++.++.+++. +.. +.. . +.... .. . .+.++..++....|+|.|++.+..+.+|+|||+|
T Consensus 150 ~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~ 229 (478)
T TIGR00913 150 IKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKS 229 (478)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhH
Confidence 222211111111 100 000 0 00000 01 1 1446778888899999999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 013584 379 FPKVLITCFLICTAMYAGVAYM 400 (440)
Q Consensus 379 ~~~ai~~a~~i~~~lY~~v~~~ 400 (440)
+||++..+..++.++|++..+.
T Consensus 230 iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 230 IPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997654
No 35
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.66 E-value=1.8e-14 Score=150.02 Aligned_cols=237 Identities=12% Similarity=0.093 Sum_probs=156.8
Q ss_pred CCCCCHHHHHHHHHHhhhccccchhHHHHHh-hCHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCC-CCCHHHHHHHHhhh
Q 013584 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKE-GGWF-GLLILVAFGVLSFYTGILLRRCLDSEPG-LETYPDIGQAAFGT 237 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~GiLslP~a~~~-~G~~-g~illi~~g~l~~~t~~lL~~~~~~~~~-~~sy~~i~~~~fG~ 237 (440)
+|+++.++++++.++++||+|++.+|..+.+ +|.. .++.+++.+++....+..+.|...+.|. ......+.++.+||
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G~ 85 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGFGP 85 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHccc
Confidence 6789999999999999999999999987554 4543 3455667777777777777777766666 55566668999999
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhh--cccchhHHHHHHHH
Q 013584 238 AGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCW--LRDLTVLSYISAGG 315 (440)
Q Consensus 238 ~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~--~r~l~~l~~~s~~~ 315 (440)
+.++++.|.+++........+......++..+++..... . .....++..++++.++. .+.++..+++..+.
T Consensus 86 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~-~------~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~ 158 (473)
T TIGR00905 86 YIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSG-N------PVPSILGASVLLWVFTFLVLRGVRQAAFINTIT 158 (473)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-C------cHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999999999887666666666666667777777632110 0 11111112222222222 33555555555555
Q ss_pred HHHHHHHHHHhhhhhcc--cccCC--C--CCCC---CCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCC-hhhHHHH
Q 013584 316 VIASILVVLCLFWVGLV--DQVNI--H--SKGT---PLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLIT 385 (440)
Q Consensus 316 ~i~~i~~ii~ii~~~~~--~~~~~--~--~~~~---~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k-~~~ai~~ 385 (440)
.+..++.++.+++.++. +...+ + .... ...+..+..++....|+|.|++....+.+|+|| +| +||++..
T Consensus 159 ~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r~iPrai~~ 237 (473)
T TIGR00905 159 TIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSDVGKATVL 237 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-cccchHHHHH
Confidence 44433333222222211 11111 1 1101 112345677888899999999999999999999 66 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 013584 386 CFLICTAMYAGVAYMGYTMF 405 (440)
Q Consensus 386 a~~i~~~lY~~v~~~gy~~f 405 (440)
+..+++++|+++..+.....
T Consensus 238 ~~~i~~~~Yil~~~~~~~~~ 257 (473)
T TIGR00905 238 GTLGALVIYILITLLSLGVL 257 (473)
T ss_pred HHHHHHHHHHHHHHHHHhCc
Confidence 99999999999887654433
No 36
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.65 E-value=2.3e-14 Score=148.99 Aligned_cols=238 Identities=13% Similarity=0.148 Sum_probs=159.0
Q ss_pred CCCCHHHHHHHHHHhhhccccchhHHH-HHhhCHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-CHHHHHHHHhhhh
Q 013584 162 RQSSYAQALLNGMNVLCGVGILSTPYA-AKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLE-TYPDIGQAAFGTA 238 (440)
Q Consensus 162 ~~~s~~~~~~~ii~~iIG~GiLslP~a-~~~~G~~-g~illi~~g~l~~~t~~lL~~~~~~~~~~~-sy~~i~~~~fG~~ 238 (440)
|++++++.++..++.+||+|++.+|.. .+.+|.. .++.+++.++.....+..+.|...+.|+.. ....++++.||++
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~~ 80 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGPF 80 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCcH
Confidence 578999999999999999999999976 5566764 455567888888888888888887777643 5666699999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhh--cccchhHHHHHHHHH
Q 013584 239 GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCW--LRDLTVLSYISAGGV 316 (440)
Q Consensus 239 ~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~--~r~l~~l~~~s~~~~ 316 (440)
.++++.|.+++........+......++..++|..... .+....++..++++.+.+ .+..+..++++.+..
T Consensus 81 ~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~-------~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~ 153 (468)
T TIGR03810 81 MGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGG-------NNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITT 153 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC-------CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 99999999988766666667776677777776643211 011111111122222222 245555555555444
Q ss_pred HHHHHHHHHhhhhhcc--cccCCCC---CC----C--CCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCChhhHHHH
Q 013584 317 IASILVVLCLFWVGLV--DQVNIHS---KG----T--PLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLIT 385 (440)
Q Consensus 317 i~~i~~ii~ii~~~~~--~~~~~~~---~~----~--~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k~~~ai~~ 385 (440)
+..++.++.+++.++. +...+.. .. . ...+.++..++....|+|.|++....+.+|+||++++||++..
T Consensus 154 ~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ip~ai~~ 233 (468)
T TIGR03810 154 IAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGKATVI 233 (468)
T ss_pred HHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCcccchHHHHH
Confidence 4333322222222211 1101100 00 0 1112345577888999999999999999999997679999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 013584 386 CFLICTAMYAGVAYMGYTMFG 406 (440)
Q Consensus 386 a~~i~~~lY~~v~~~gy~~fG 406 (440)
++.+++++|+++.+..+...+
T Consensus 234 ~~~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 234 GLIGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred HHHHHHHHHHHHHHHHHhCcC
Confidence 999999999999987665544
No 37
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.64 E-value=3.1e-14 Score=147.13 Aligned_cols=232 Identities=16% Similarity=0.126 Sum_probs=145.4
Q ss_pred CCCCCCHHHHHHHHHHhhhccccchhHHH-HHhhCHH--HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhh
Q 013584 160 ISRQSSYAQALLNGMNVLCGVGILSTPYA-AKEGGWF--GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFG 236 (440)
Q Consensus 160 ~~~~~s~~~~~~~ii~~iIG~GiLslP~a-~~~~G~~--g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG 236 (440)
.+|+.+.++.+...++.++|+|++.+|.. ...+|.. .++.+++.++++...+..+.|.....|.........++.+|
T Consensus 6 L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~~~g 85 (445)
T PRK11357 6 LQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNAGS 85 (445)
T ss_pred ccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHHhcC
Confidence 47889999999999999999999999876 4556642 44445566666666666666655444433333333788999
Q ss_pred hhHhHHHHHHHHH-HHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhh--cccchhHHHHHH
Q 013584 237 TAGRIAVSVILYA-ELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCW--LRDLTVLSYISA 313 (440)
Q Consensus 237 ~~~~~l~~~~~~~-~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~--~r~l~~l~~~s~ 313 (440)
+..++++.|..++ ........+....++++..+++.. .....++..++++.+.. .+..+..+++..
T Consensus 86 ~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~-----------~~~~~~~~~~~~~~~~~ln~~gv~~~~~v~~ 154 (445)
T PRK11357 86 RPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPID-----------PLLGKFIAAGLIIAFMLLHLRSVEGGAAFQT 154 (445)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----------hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 9999999997543 333344556666777766554321 01111222222222222 234555555555
Q ss_pred HHHHHHHHHHHHhhhhhc--ccccCCCCCCC-----CCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCC-hhhHHHH
Q 013584 314 GGVIASILVVLCLFWVGL--VDQVNIHSKGT-----PLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLIT 385 (440)
Q Consensus 314 ~~~i~~i~~ii~ii~~~~--~~~~~~~~~~~-----~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k-~~~ai~~ 385 (440)
+..+..++.++.+++.++ ....+++.... ..++.++..++....|+|.|++....+.+|+|||+| +||++..
T Consensus 155 ~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~ 234 (445)
T PRK11357 155 LITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIG 234 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHHHH
Confidence 444443333322222221 11111111111 112446777888899999999999999999999998 9999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013584 386 CFLICTAMYAGVAYMGY 402 (440)
Q Consensus 386 a~~i~~~lY~~v~~~gy 402 (440)
++.+++++|+++.+...
T Consensus 235 ~~~i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 235 SCLLVLVLYTLLALVIS 251 (445)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998877544
No 38
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.64 E-value=1.9e-14 Score=148.74 Aligned_cols=222 Identities=14% Similarity=0.158 Sum_probs=153.2
Q ss_pred HHHHhhhccccchhHH-HHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhhHhHHHHHHHHHH
Q 013584 172 NGMNVLCGVGILSTPY-AAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIAVSVILYAE 250 (440)
Q Consensus 172 ~ii~~iIG~GiLslP~-a~~~~G~~g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~~~l~~~~~~~~ 250 (440)
+.++.+||+|+|..|. +++++|...++..++.|++....+..++|+..+.|.......++++.+|++.++++.|.+++.
T Consensus 2 ~~ig~~IGsGif~~~g~~~~~aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~ 81 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWF 81 (446)
T ss_pred eeecchhHhHHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHHH
Confidence 4578999999998886 788999877777889999999999999999888888888889999999999999999999987
Q ss_pred HHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhhhh
Q 013584 251 LYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCLFWVG 330 (440)
Q Consensus 251 ~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i~~i~~ii~ii~~~ 330 (440)
....+.......+.++..+.+... ...+.++..+++..+. .+..+..+.+..+..+..++.++.+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~lN-~~gv~~~~~i~~~~~~~ki~~li~~ii~~ 150 (446)
T PRK10197 82 WVLVIPLEANIAAMILHSWVPGIP----------IWLFSLVITLALTGSN-LLSVKNYGEFEFWLALCKVIAILAFIFLG 150 (446)
T ss_pred HHHHHHHHHHHHHHHHHhccccCc----------HHHHHHHHHHHHHHHH-HHhhHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 666555555555655555543221 1222222222222222 22455555444444333332222222221
Q ss_pred cc------cc---cCC---CC--CCCCCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCC-hhhHHHHHHHHHHHHHH
Q 013584 331 LV------DQ---VNI---HS--KGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLITCFLICTAMYA 395 (440)
Q Consensus 331 ~~------~~---~~~---~~--~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k-~~~ai~~a~~i~~~lY~ 395 (440)
+. .. .+. .. ...+.++.++..++....|+|.|++.+....+|+|||+| +||++..++..+.++|+
T Consensus 151 ~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yi 230 (446)
T PRK10197 151 AVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYL 230 (446)
T ss_pred HHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHH
Confidence 11 00 000 00 011334567889999999999999999999999999998 99999999999999999
Q ss_pred HHHHHHHHH
Q 013584 396 GVAYMGYTM 404 (440)
Q Consensus 396 ~v~~~gy~~ 404 (440)
+..++....
T Consensus 231 l~~~~~~~~ 239 (446)
T PRK10197 231 CSIFVVVAL 239 (446)
T ss_pred HHHHHHhee
Confidence 987764444
No 39
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.63 E-value=5.9e-14 Score=144.90 Aligned_cols=230 Identities=14% Similarity=0.123 Sum_probs=153.5
Q ss_pred CCCCCCHHHHHHHHHHhhhccccchhHHHHHhhCHHHH-HHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhh
Q 013584 160 ISRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGL-LILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTA 238 (440)
Q Consensus 160 ~~~~~s~~~~~~~ii~~iIG~GiLslP~a~~~~G~~g~-illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~ 238 (440)
.+|+.+.++.+...++.++|......+.+++.+|+.+. +..++.+++....+..+.|...+.|.......+.++.+|++
T Consensus 5 l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~~~G~~ 84 (442)
T TIGR00908 5 LKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARRAFGPW 84 (442)
T ss_pred hhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCcH
Confidence 37889999999999999998334555788899999754 34455666666666778887777777777778899999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHH
Q 013584 239 GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIA 318 (440)
Q Consensus 239 ~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i~ 318 (440)
.+++..|..++........+....+.++..+++... ...+.++..+++..+. .+..+..+++..+..+.
T Consensus 85 ~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~~----------~~~~~~~~~~~~~~ln-~~g~~~~~~i~~~~~~~ 153 (442)
T TIGR00908 85 GGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVGP----------GWLAALVFYIVFIGIN-ILGVGEAAKLEFVVTAV 153 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----------hhHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHH
Confidence 999999999888777777888888898888876432 1122222222222111 22444444444333222
Q ss_pred HHHHHHHhhhhhccc--ccCCCCC-------CCCCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCC-hhhHHHHHHH
Q 013584 319 SILVVLCLFWVGLVD--QVNIHSK-------GTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLITCFL 388 (440)
Q Consensus 319 ~i~~ii~ii~~~~~~--~~~~~~~-------~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k-~~~ai~~a~~ 388 (440)
.++.++.++.....+ ..++... ..+.++.++..++...+|+|.|++.+..+.+|+|||+| +||++..++.
T Consensus 154 ~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s~~ 233 (442)
T TIGR00908 154 AIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAIL 233 (442)
T ss_pred HHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHH
Confidence 222221111111111 0011000 01122345677888889999999999999999999987 9999999999
Q ss_pred HHHHHHHHHHHH
Q 013584 389 ICTAMYAGVAYM 400 (440)
Q Consensus 389 i~~~lY~~v~~~ 400 (440)
+++++|+++.++
T Consensus 234 ~~~~~~~~~~~~ 245 (442)
T TIGR00908 234 TLLALAAGILVV 245 (442)
T ss_pred HHHHHHHHHHHH
Confidence 999999877553
No 40
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.62 E-value=8e-14 Score=141.00 Aligned_cols=235 Identities=16% Similarity=0.170 Sum_probs=164.3
Q ss_pred HHHHHHHhhhccccchhHHHHHhhCHHHH-HHHHHHHHHHHHHHHHHHHhhhcCCC-CCCHHHHHHHHhhhhHhHHHHHH
Q 013584 169 ALLNGMNVLCGVGILSTPYAAKEGGWFGL-LILVAFGVLSFYTGILLRRCLDSEPG-LETYPDIGQAAFGTAGRIAVSVI 246 (440)
Q Consensus 169 ~~~~ii~~iIG~GiLslP~a~~~~G~~g~-illi~~g~l~~~t~~lL~~~~~~~~~-~~sy~~i~~~~fG~~~~~l~~~~ 246 (440)
=++.+++++||+|+|.+|....+.||..+ +..+++..+++++++++.|.....+. ..++.++.++.|||+++.++++.
T Consensus 8 w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~l 87 (397)
T TIGR00814 8 WMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLL 87 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHH
Confidence 35789999999999999999999999844 44455666667888888887544443 67999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 013584 247 LYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCL 326 (440)
Q Consensus 247 ~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i~~i~~ii~i 326 (440)
+++..+..+.+|....++.+..++.+..... .. ...+..+..++++-.......+.+.+++.+.+...++.++.+
T Consensus 88 Y~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~----~p-~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l 162 (397)
T TIGR00814 88 YFFAIYPILLIYSVAITNDSASFLVNQLGTA----PP-LRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLL 162 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----Cc-HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887775532110 00 122222222222222333477777777776665444444333
Q ss_pred hhhhccc--ccCCCCCC-CCCCCCchHHHHHHHHHHhhcccchHHHH----hhccCC----CChhhHHHHHHHHHHHHHH
Q 013584 327 FWVGLVD--QVNIHSKG-TPLNLATLPVAIGLYGYCYSGHAVFPNIY----TSMAQP----NQFPKVLITCFLICTAMYA 395 (440)
Q Consensus 327 i~~~~~~--~~~~~~~~-~~~~~~~~~~a~~~~~faf~g~~~i~~i~----~emk~p----~k~~~ai~~a~~i~~~lY~ 395 (440)
....+.+ .......+ ....+..+..+++..++||.+|++++++. ++.+|| +|..|++..+..+.+++|+
T Consensus 163 ~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~ 242 (397)
T TIGR00814 163 SLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVM 242 (397)
T ss_pred HHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3333211 11111111 11234678999999999999999999998 445533 4589999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 013584 396 GVAYMGYTMFGES 408 (440)
Q Consensus 396 ~v~~~gy~~fG~~ 408 (440)
..-+......+.+
T Consensus 243 ~~~~s~~~~l~~~ 255 (397)
T TIGR00814 243 FFVFSCVLSLSPA 255 (397)
T ss_pred HHHHHHhccCCHH
Confidence 9888877777643
No 41
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.59 E-value=9.5e-14 Score=140.89 Aligned_cols=232 Identities=12% Similarity=0.131 Sum_probs=180.4
Q ss_pred CCCCCCCHHHHHHHHHHhhhccccc-hhHHHHHhhCHHHH-HHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhh
Q 013584 159 PISRQSSYAQALLNGMNVLCGVGIL-STPYAAKEGGWFGL-LILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFG 236 (440)
Q Consensus 159 ~~~~~~s~~~~~~~ii~~iIG~GiL-slP~a~~~~G~~g~-illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG 236 (440)
+.+|++..++..++.++..||+|+| +...+++++|+.|+ +..++.|.+.+.++..|+|+....|...+|..++.+..+
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfvd 120 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFVD 120 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcC
Confidence 4589999999999999999999965 77899999999955 555888888899999999999888866679999999999
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHH----HHH
Q 013584 237 TAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLS----YIS 312 (440)
Q Consensus 237 ~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~----~~s 312 (440)
+-.++.+.|.+++.....+...++..+..++.++|..- + ...|..+..++++.+..+ ..+..+ |++
T Consensus 121 pa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~v-~--------~~~w~~iF~~~i~~iN~~-~Vk~fGE~Efw~s 190 (541)
T COG0833 121 PAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDTV-P--------PWIWIAIFLVLIFLLNLF-GVKGFGETEFWFS 190 (541)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCCC-C--------hHHHHHHHHHHHHHHHHh-cccccceehHHHH
Confidence 99999999999999999999999999999999986541 1 135555555555555544 344333 566
Q ss_pred HHHHHHHHHHHHHh--hhhhcccc-c--C---CC-CCCCCCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCC-hhhH
Q 013584 313 AGGVIASILVVLCL--FWVGLVDQ-V--N---IH-SKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKV 382 (440)
Q Consensus 313 ~~~~i~~i~~ii~i--i~~~~~~~-~--~---~~-~~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k-~~~a 382 (440)
.+-+++++..++.. +..|...+ . + ++ +..-+.++.++...+-+..|||+|.+.+.-...|-+||+| +||+
T Consensus 191 ~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkA 270 (541)
T COG0833 191 SIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKA 270 (541)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHH
Confidence 66665555443322 22232221 1 1 11 1222456788889999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013584 383 LITCFLICTAMYAGVAYM 400 (440)
Q Consensus 383 i~~a~~i~~~lY~~v~~~ 400 (440)
+.-.+..+.++|++.-++
T Consensus 271 ik~vfwRIl~FYi~si~~ 288 (541)
T COG0833 271 IKQVFWRILLFYILSIFV 288 (541)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999876553
No 42
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.57 E-value=4.9e-13 Score=134.85 Aligned_cols=231 Identities=16% Similarity=0.214 Sum_probs=166.6
Q ss_pred HHHHHhhhccccchhHHHHHhhCHH-HHHHHHHHHHHHHHHHHHHHHhhhcC-CCCCCHHHHHHHHhhhhHhHHHHHHHH
Q 013584 171 LNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSE-PGLETYPDIGQAAFGTAGRIAVSVILY 248 (440)
Q Consensus 171 ~~ii~~iIG~GiLslP~a~~~~G~~-g~illi~~g~l~~~t~~lL~~~~~~~-~~~~sy~~i~~~~fG~~~~~l~~~~~~ 248 (440)
+.++|+.||+|+|++|-.....|.. .++++++++.+++++++.|.|...+. +...++.+++++.||+.++.+.+++++
T Consensus 26 l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ilYf 105 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYF 105 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHHHH
Confidence 8899999999999999999999986 88888999999999999999987665 566799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhh
Q 013584 249 AELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCLFW 328 (440)
Q Consensus 249 ~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i~~i~~ii~ii~ 328 (440)
+.++..+.+|.....+.+..++.+.. ... ... +.+..++..+++....+. .-+.+-+++.+-+...++.++.+..
T Consensus 106 f~ly~ll~aY~~~itn~l~sfl~~ql-~~~--~~~-r~l~slifv~~l~~iv~~-G~~~v~kv~~~Lv~~~i~~l~~l~~ 180 (443)
T PRK13629 106 FAICPLLWIYGVTITNTFMTFWENQL-GFA--PLN-RGFVALFLLLLMAFVIWF-GKDLMVKVMSYLVWPFIASLVLISL 180 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-CcC--Ccc-HHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988887654421 110 111 334445555455444444 4566666666554444433333322
Q ss_pred hhcc--cccCCC-CCC---CCC-C---CCchHHHHHHHHHHhhcccchHHHHhh----cc-----C--CCChhhHHHHHH
Q 013584 329 VGLV--DQVNIH-SKG---TPL-N---LATLPVAIGLYGYCYSGHAVFPNIYTS----MA-----Q--PNQFPKVLITCF 387 (440)
Q Consensus 329 ~~~~--~~~~~~-~~~---~~~-~---~~~~~~a~~~~~faf~g~~~i~~i~~e----mk-----~--p~k~~~ai~~a~ 387 (440)
..+. +..... .+. +.. + ...++.+++..++||+-|.++|++... .+ + ++|..|++.++.
T Consensus 181 ~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs 260 (443)
T PRK13629 181 SLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRAS 260 (443)
T ss_pred HHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence 2211 111111 010 011 1 124789999999999999999999888 43 3 456889999999
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 013584 388 LICTAMYAGVAYMGYTMFG 406 (440)
Q Consensus 388 ~i~~~lY~~v~~~gy~~fG 406 (440)
.+..++|+..-+.....-+
T Consensus 261 ~i~lv~y~fwv~S~~gsLs 279 (443)
T PRK13629 261 MLMVAVVMFFAFSCLFTLS 279 (443)
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 9999999888776665554
No 43
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.56 E-value=5.5e-14 Score=146.66 Aligned_cols=238 Identities=12% Similarity=0.109 Sum_probs=173.9
Q ss_pred CCCCCCCCHHHHHHHHHHhhhccccch-hHHHHHhhCHHH-HHHHHHHHHHHHHHHHHHHHhhhcCCCC-CCHHHHHHHH
Q 013584 158 HPISRQSSYAQALLNGMNVLCGVGILS-TPYAAKEGGWFG-LLILVAFGVLSFYTGILLRRCLDSEPGL-ETYPDIGQAA 234 (440)
Q Consensus 158 ~~~~~~~s~~~~~~~ii~~iIG~GiLs-lP~a~~~~G~~g-~illi~~g~l~~~t~~lL~~~~~~~~~~-~sy~~i~~~~ 234 (440)
.+.+|+++.++..++.++.+||+|++. .+.++++.|..+ ++..++.|+.+..++..++|...+.|.. .++..++++.
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~ 105 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRF 105 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeee
Confidence 355899999999999999999999875 578899999874 4555788888889999999999888874 5666669999
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhc---------cccccCcCccccchhHHHHHHHHHHHHhhhhcc--
Q 013584 235 FGTAGRIAVSVILYAELYACCIEYIILESDNLSSLF---------PNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLR-- 303 (440)
Q Consensus 235 fG~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r-- 303 (440)
.|+.+++++.|.++++....+...+...+.+++.+. +..+ ...| ....++.++++.++.++
T Consensus 106 i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~--~~~~------~~~fla~~v~in~~gv~~~ 177 (554)
T KOG1286|consen 106 VGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVN--PGGW------IPDFLAFILIINLFGVLAY 177 (554)
T ss_pred eCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCC--CCcc------HHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999986 2221 1111 11122222333333333
Q ss_pred -cchhHHHHHHHHHHHHHHHHHHhhhhhcccc-c-C------CCCC--CCCCCCCchHHHHHHHHHHhhcccchHHHHhh
Q 013584 304 -DLTVLSYISAGGVIASILVVLCLFWVGLVDQ-V-N------IHSK--GTPLNLATLPVAIGLYGYCYSGHAVFPNIYTS 372 (440)
Q Consensus 304 -~l~~l~~~s~~~~i~~i~~ii~ii~~~~~~~-~-~------~~~~--~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~e 372 (440)
..+....+..+-.+..++++.+++..|.... . + ++.+ ..+.++.++..++.+..|+|.|.+.+....+|
T Consensus 178 ge~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E 257 (554)
T KOG1286|consen 178 GEVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEE 257 (554)
T ss_pred cceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHh
Confidence 3333333333333333334444444443322 1 1 1111 12445789999999999999999999999999
Q ss_pred ccCCCC-hhhHHHHHHHHHHHHHHHHHHHHHH
Q 013584 373 MAQPNQ-FPKVLITCFLICTAMYAGVAYMGYT 403 (440)
Q Consensus 373 mk~p~k-~~~ai~~a~~i~~~lY~~v~~~gy~ 403 (440)
.|||+| +|+++..++..++++|++++++--+
T Consensus 258 ~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l 289 (554)
T KOG1286|consen 258 AKNPRKAIPKAIKQSLLRILLFYILSSIVLGL 289 (554)
T ss_pred ccCCcccccHHHHHHHHHHHHHHHHHHHHheE
Confidence 999998 9999999999999999999885433
No 44
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.55 E-value=7.9e-13 Score=135.73 Aligned_cols=237 Identities=16% Similarity=0.161 Sum_probs=161.9
Q ss_pred CCHHHHHHHHHHhhhccccchhHHHHHhhCHHHHHHHHHHHHHH-HHHHHHHHHhhhcCCCCCCHHHHHHHHhhhhHhHH
Q 013584 164 SSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLS-FYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIA 242 (440)
Q Consensus 164 ~s~~~~~~~ii~~iIG~GiLslP~a~~~~G~~g~illi~~g~l~-~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~~~l 242 (440)
+|+++++...++.++|+|++..| .+...|...++..++.+++. ...+..+.|...+.|.........++.+||+.+++
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~ 79 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGPSAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWGFI 79 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccchhc
Confidence 47899999999999999999999 77777876555555555555 56667777776667777788888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHH-H
Q 013584 243 VSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASI-L 321 (440)
Q Consensus 243 ~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i~~i-~ 321 (440)
..+.+++........+.....+++...+... ...+.+ ......++..++...+. .+..+..++++.+..+..+ .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~i~~~~~~~~~~l~-~~g~~~~~~~~~~~~~~~i~~ 154 (426)
T PF13520_consen 80 VGWLYWVAYILSLASVASSFASYLLSLFGPD---LNPSPW-PQFLIAIILILLFTLLN-LLGIKLSGKIQNILTVIKIVI 154 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTTGG---GTCSHH-HHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHH
T ss_pred ccceeEEEeeccccccccchhhhhhhccccc---cccccc-hheeeeecccccceEee-echhhhhhhhhhhhhhhhhhh
Confidence 9999999888888778888888887766321 001100 01111222222222222 3356666666665555444 2
Q ss_pred HHHHhhhhhccc--ccCCC------CCCCCCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCChhhHHHHHHHHHHHH
Q 013584 322 VVLCLFWVGLVD--QVNIH------SKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAM 393 (440)
Q Consensus 322 ~ii~ii~~~~~~--~~~~~------~~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k~~~ai~~a~~i~~~l 393 (440)
.++.+++.++.. ....+ ....+..+..+..++...+|+|.|++..+.+.+|+|| |++||++..+.+++.++
T Consensus 155 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~ai~~~~~~~~i~ 233 (426)
T PF13520_consen 155 PLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPRAIIISIIIVAII 233 (426)
T ss_dssp HHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHHHHHHHHHHHHHH
T ss_pred hhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc-hhheeecccchhHHHHH
Confidence 333333333221 11111 1223445667889999999999999999999999998 66999999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 013584 394 YAGVAYMGYTMFGE 407 (440)
Q Consensus 394 Y~~v~~~gy~~fG~ 407 (440)
|+++.+......++
T Consensus 234 y~l~~~~~~~~~~~ 247 (426)
T PF13520_consen 234 YILFSIALLGALPD 247 (426)
T ss_dssp HHHHHHHHHTTSTH
T ss_pred Hhhhhheeeecccc
Confidence 99998877666654
No 45
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.54 E-value=2e-12 Score=134.79 Aligned_cols=248 Identities=10% Similarity=0.010 Sum_probs=152.2
Q ss_pred CCCCCCCHHHHHHHHHHhh-hccccchhHH-HHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhh
Q 013584 159 PISRQSSYAQALLNGMNVL-CGVGILSTPY-AAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFG 236 (440)
Q Consensus 159 ~~~~~~s~~~~~~~ii~~i-IG~GiLslP~-a~~~~G~~g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG 236 (440)
+.+|+.+.++.+...++.+ +|+|+++++. ++..+|...+..+++.++.....+..+.|...+.|.........++.+|
T Consensus 10 ~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~~~~g 89 (475)
T TIGR03428 10 QLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSRRMGG 89 (475)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHcC
Confidence 4578899999999999986 8999998874 5788887444555677777777888888888777777777777999999
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccccc-C-cCccc-cc--hhHHHHHHHHHHHHhhhhcccchhHHHH
Q 013584 237 TAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHL-S-FGGFY-LN--SHHLFALMTTLAVLPTCWLRDLTVLSYI 311 (440)
Q Consensus 237 ~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~-~-~~~~~-~~--~~~~~~ii~~liv~pl~~~r~l~~l~~~ 311 (440)
++..+++.|.+++...............++..+++.... . ...+. .. .+.....+..+++.-+.-.+..+...++
T Consensus 90 ~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k~~~~i 169 (475)
T TIGR03428 90 EVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVEWMSRV 169 (475)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 999999999988876554444444444444433221110 0 00000 00 0111111111111111122345555555
Q ss_pred HHHHHHHHHHHHHHhhhhhccc---ccC--CCCCCCCC--C-CCchHHHHHHHHHHhhcccchHHHHhhccCCCC-hhhH
Q 013584 312 SAGGVIASILVVLCLFWVGLVD---QVN--IHSKGTPL--N-LATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKV 382 (440)
Q Consensus 312 s~~~~i~~i~~ii~ii~~~~~~---~~~--~~~~~~~~--~-~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k-~~~a 382 (440)
..+.++..++.++.++...... +.. +....... + ...+..++....|+|.|.+.+..+.+|+|||+| +||+
T Consensus 170 ~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r~iPra 249 (475)
T TIGR03428 170 NTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPRRVAPRT 249 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcchhhhHH
Confidence 5544443333222222222211 111 10000011 1 123445666788999999999999999999998 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 013584 383 LITCFLICTAMYAGVAYMGYTMFG 406 (440)
Q Consensus 383 i~~a~~i~~~lY~~v~~~gy~~fG 406 (440)
+..++.+++++|.++.+......+
T Consensus 250 i~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 250 ILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999999998877777666555444
No 46
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.51 E-value=4.8e-12 Score=131.17 Aligned_cols=242 Identities=17% Similarity=0.182 Sum_probs=162.5
Q ss_pred CCCCCHHH-HHHHHHHhhhccccchhHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhhH
Q 013584 161 SRQSSYAQ-ALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAG 239 (440)
Q Consensus 161 ~~~~s~~~-~~~~ii~~iIG~GiLslP~a~~~~G~~g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~ 239 (440)
+++.+.++ .....++.++|.|++.+|......+....+.+++.+++..+++..+.+...+.|+...+....++.+|++.
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~ 90 (466)
T COG0531 11 KKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAKRALGPRL 90 (466)
T ss_pred CCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehhhhcCcch
Confidence 67788888 99999999999999999887665542222224555555555566666666556665566666999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhc--ccchhHHHHHHHHHH
Q 013584 240 RIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWL--RDLTVLSYISAGGVI 317 (440)
Q Consensus 240 ~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~--r~l~~l~~~s~~~~i 317 (440)
++++.|.+++.............+.++..+++........ .....++..++++.+.++ +..+...++..+..+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~~~~ 165 (466)
T COG0531 91 GFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIG-----PLLIILIALALIALLTLLNLRGIKASAKINSIITI 165 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCC-----chHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999888888888888888888888742100000 012222222222222332 355555555555544
Q ss_pred HHHHHHHHhhhhhcccccC--CCCCC----CCCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCC-hhhHHHHHHHHH
Q 013584 318 ASILVVLCLFWVGLVDQVN--IHSKG----TPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLITCFLIC 390 (440)
Q Consensus 318 ~~i~~ii~ii~~~~~~~~~--~~~~~----~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k-~~~ai~~a~~i~ 390 (440)
..++.++.+.+.+...... ..... ....+..+..++....|+|.|.+.+..+.+|+|||+| +||++..++.++
T Consensus 166 ~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~~~~~~ 245 (466)
T COG0531 166 LKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIV 245 (466)
T ss_pred HHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHHHHHHHH
Confidence 4444443333332221111 11111 1112235778888899999999999999999999987 999999999999
Q ss_pred HHHHHHHHHHHHHHhcC
Q 013584 391 TAMYAGVAYMGYTMFGE 407 (440)
Q Consensus 391 ~~lY~~v~~~gy~~fG~ 407 (440)
+++|++.++......+.
T Consensus 246 ~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 246 LILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHhCccH
Confidence 99999999988777765
No 47
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.46 E-value=1.4e-11 Score=121.76 Aligned_cols=235 Identities=13% Similarity=0.200 Sum_probs=171.1
Q ss_pred CCCHHHHHHHHHHhhhccccchhHHHHH-hhCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhhHhH
Q 013584 163 QSSYAQALLNGMNVLCGVGILSTPYAAK-EGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRI 241 (440)
Q Consensus 163 ~~s~~~~~~~ii~~iIG~GiLslP~a~~-~~G~~g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~~~ 241 (440)
|+|..|.++.++.+++|+|++.+|.... ++| -|++..++.+++......++.+..++.|+ ++..++.++.+||+.+.
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~-~~l~~~~~~~~Gk~lg~ 78 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRFPG-KTLVEISEKLFGKWLGK 78 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHhCcHHHH
Confidence 5799999999999999999999998744 442 24444455555555555556666655566 69999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhh-ccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHH
Q 013584 242 AVSVILYAELYACCIEYIILESDNLSSL-FPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASI 320 (440)
Q Consensus 242 l~~~~~~~~~~~~~v~y~i~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i~~i 320 (440)
++.+.+.+..+......+...++.+... +|..+ ..+..+..+++.-....+.++.+.+.+.+.....+
T Consensus 79 ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~TP-----------~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~ 147 (320)
T PF03845_consen 79 IINLLYILYFLLISALVLREFSEFIKTYLLPETP-----------IWVIILLFLLVAAYAARKGIEVIARVAEILFPIFL 147 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCC-----------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 9999999988888888888888888765 44332 23333333333334445688888876555444444
Q ss_pred HHHHHhhhhhcccccCCCC--CCCCCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCChhhHHHHHHHHHHHHHHHHH
Q 013584 321 LVVLCLFWVGLVDQVNIHS--KGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAGVA 398 (440)
Q Consensus 321 ~~ii~ii~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k~~~ai~~a~~i~~~lY~~v~ 398 (440)
+.++.+.... ..+.++.. +....++..+..+.....+.|.|...+..+...+|+|+|..|....+..+++++|.+.-
T Consensus 148 i~~~~i~~~~-~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~~~~~~~~~~~~~~~ 226 (320)
T PF03845_consen 148 ILLLLILLLS-IPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLLIAILISGLFLLFII 226 (320)
T ss_pred HHHHHHHHHh-cccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333222 23323222 23356777888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchh
Q 013584 399 YMGYTMFGESTLS 411 (440)
Q Consensus 399 ~~gy~~fG~~~~~ 411 (440)
+.....||.+..+
T Consensus 227 ~~~i~vfG~~~~~ 239 (320)
T PF03845_consen 227 FITIGVFGPELAK 239 (320)
T ss_pred HHHHHhcCHHHHh
Confidence 9999999965433
No 48
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.42 E-value=4.3e-11 Score=125.45 Aligned_cols=241 Identities=11% Similarity=0.142 Sum_probs=138.1
Q ss_pred CCCCCHHHHHHHHHHhhhccccchhHHHHHhhCHHHHHHHHHHHHHHH-HHHHHHHHhhhcCCC-CCCHHHHHHHHhhhh
Q 013584 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSF-YTGILLRRCLDSEPG-LETYPDIGQAAFGTA 238 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~GiLslP~a~~~~G~~g~illi~~g~l~~-~t~~lL~~~~~~~~~-~~sy~~i~~~~fG~~ 238 (440)
+|++++++.+++.++.++|.+ .+|.+++..|..+++..++.+++.. -.+..+.|+....|. ...-....++++|++
T Consensus 6 ~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G~~ 83 (496)
T PRK15238 6 KKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVGPK 83 (496)
T ss_pred cCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcCch
Confidence 678999999999999999987 6688888899876666666665543 355667777766665 456667799999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH-HhhHhhhcccccc-CcCccccchhHHHHHHHHHHHHhhhh--cccchhHHHHHHH
Q 013584 239 GRIAVSVILYAELYACCIEYIILE-SDNLSSLFPNAHL-SFGGFYLNSHHLFALMTTLAVLPTCW--LRDLTVLSYISAG 314 (440)
Q Consensus 239 ~~~l~~~~~~~~~~~~~v~y~i~~-~~~l~~~~~~~~~-~~~~~~~~~~~~~~ii~~liv~pl~~--~r~l~~l~~~s~~ 314 (440)
+++++.|..+.............. .-....++..... ......+.......+++.+.++.+++ .|.++..++++.+
T Consensus 84 ~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn~~g~~~~~~i~~~ 163 (496)
T PRK15238 84 FAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFLGLNSTQVVGILAVIWMILVTFVASKGINKIAKVTSI 163 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 999877765544332221111000 0000111111000 00000011112222222222222233 3456666666654
Q ss_pred HHHHHHHH----H-HHhh-hhhccccc--CCC-----CC-CCCC-CCCchHHHHHHHHHHhhcccchHHHHhhccCCCC-
Q 013584 315 GVIASILV----V-LCLF-WVGLVDQV--NIH-----SK-GTPL-NLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ- 378 (440)
Q Consensus 315 ~~i~~i~~----i-i~ii-~~~~~~~~--~~~-----~~-~~~~-~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k- 378 (440)
+.+..++. + +.++ +....... ... .. .+.+ +..++..++....|+|.|++.+....+|+|||+|
T Consensus 164 ~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~~ 243 (496)
T PRK15238 164 GGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKTENPEKN 243 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHhccCCCcc
Confidence 43322211 1 1111 11111110 000 00 0111 1124666778889999999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 013584 379 FPKVLITCFLICTAMYAGVAYMGYT 403 (440)
Q Consensus 379 ~~~ai~~a~~i~~~lY~~v~~~gy~ 403 (440)
+||++..++.+++++|++..++...
T Consensus 244 ~p~ai~~~~~~~~~~y~l~~~~~~~ 268 (496)
T PRK15238 244 FPKGIIIAAIVISIGYSLAIFLWGV 268 (496)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999987654433
No 49
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.39 E-value=7.2e-11 Score=123.32 Aligned_cols=246 Identities=11% Similarity=0.016 Sum_probs=144.2
Q ss_pred CCCCCCCHHHHHHHHHHhhh-ccccchh-HHHHHhhCHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHh
Q 013584 159 PISRQSSYAQALLNGMNVLC-GVGILST-PYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAF 235 (440)
Q Consensus 159 ~~~~~~s~~~~~~~ii~~iI-G~GiLsl-P~a~~~~G~~-g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~f 235 (440)
+.+|+.+.++.+...++.+. ..|++.. +.++..+|.. -+..+++.+++....+..++|+..+.|........+++++
T Consensus 9 ~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~~~~~ 88 (482)
T TIGR00907 9 ELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWSAKLA 88 (482)
T ss_pred eeecccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHhc
Confidence 34788999999999999542 2676554 5678888986 4566778888888888899999888887777777788888
Q ss_pred h----hhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhc--ccchhHH
Q 013584 236 G----TAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWL--RDLTVLS 309 (440)
Q Consensus 236 G----~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~--r~l~~l~ 309 (440)
| +...+++.|.+++.....+.+.....+.++..++...... ..+... +....++..++++.++.+ +..+.+.
T Consensus 89 g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~i~~~~~~~~~~in~~g~k~~~ 166 (482)
T TIGR00907 89 PPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPG-REYIPT-RWHIFGIMIGIHLIHALINSLPTKWLP 166 (482)
T ss_pred ccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCcccc-CchhhhhHHHHHHHHHHHHHhhHhHHH
Confidence 7 4556788888777766666655556666655433211100 001011 111111222122222222 2344444
Q ss_pred HHHHHHHHHHHHHHHHhhhhhc-ccccC-------CCC-CCCCCCC--C--chHHHHHHHHHHhhcccchHHHHhhccCC
Q 013584 310 YISAGGVIASILVVLCLFWVGL-VDQVN-------IHS-KGTPLNL--A--TLPVAIGLYGYCYSGHAVFPNIYTSMAQP 376 (440)
Q Consensus 310 ~~s~~~~i~~i~~ii~ii~~~~-~~~~~-------~~~-~~~~~~~--~--~~~~a~~~~~faf~g~~~i~~i~~emk~p 376 (440)
++..+..+..++.++.+++... ..... +.. .....++ . .+..++....|+|.|.+.+..+.+|+|||
T Consensus 167 ~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~knP 246 (482)
T TIGR00907 167 RITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEIENP 246 (482)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhcCCh
Confidence 4444333332222221111111 11100 000 0000011 1 34555666789999999999999999999
Q ss_pred CC-hhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013584 377 NQ-FPKVLITCFLICTAMYAGVAYMGYTMFG 406 (440)
Q Consensus 377 ~k-~~~ai~~a~~i~~~lY~~v~~~gy~~fG 406 (440)
+| +||++..++.+++++|++..+..+...+
T Consensus 247 ~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~ 277 (482)
T TIGR00907 247 EVVGPRAIIGAVAIGIVTGFCFNIVLFFSMG 277 (482)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 98 9999999998877765554444333333
No 50
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.31 E-value=3.1e-12 Score=133.41 Aligned_cols=233 Identities=13% Similarity=0.152 Sum_probs=158.0
Q ss_pred HHHHHhhhccccc-hhHHHHHhhCHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhhHhHHHHHHHH
Q 013584 171 LNGMNVLCGVGIL-STPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIAVSVILY 248 (440)
Q Consensus 171 ~~ii~~iIG~GiL-slP~a~~~~G~~-g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~~~l~~~~~~ 248 (440)
+..++.++|+|++ ..+.++.++|.. ..+.+++.+++...++..+.++..+.|...++..+.++.+|+..++.+.|.++
T Consensus 4 ~~~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~y~ 83 (478)
T PF00324_consen 4 MISIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWAYW 83 (478)
T ss_pred EeeHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHHHH
Confidence 4568899999976 457789999986 56777888888888888999988777777788888999999999999999998
Q ss_pred HHHHHHHHHHHHHHHhhHhhh--ccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 013584 249 AELYACCIEYIILESDNLSSL--FPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCL 326 (440)
Q Consensus 249 ~~~~~~~v~y~i~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i~~i~~ii~i 326 (440)
+.............+..+..+ ++.... .+.+.. .+.++..++++.+.+. ..+....+.....+..++.++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~i~~~~~~~l~~~-gv~~~~~~~~~~~~i~~~~li~~ 157 (478)
T PF00324_consen 84 LSYIAAIAAEATAAGSFLQFWGYFPGLPS---TWVWGI--LIAIIFILLITLLNLF-GVRVSGKIEFILTIIKLIALIAF 157 (478)
T ss_pred HHHHHHHHhhhhhhhhhhccccccccccc---cccccc--hhhhhhhhhhhhhhhh-hhhccchHHHHHHHHhhhHhhhh
Confidence 888888877777777777766 443321 111111 1222333333232322 33333332222222222222222
Q ss_pred hhhh-c---cc-ccCCC------------CC-----CCCCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCC-hhhHH
Q 013584 327 FWVG-L---VD-QVNIH------------SK-----GTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVL 383 (440)
Q Consensus 327 i~~~-~---~~-~~~~~------------~~-----~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k-~~~ai 383 (440)
++.+ + .. +.... .+ ....++.++..++...+++|.|.+.+....+|.|||+| +||++
T Consensus 158 ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~ 237 (478)
T PF00324_consen 158 IIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPRAT 237 (478)
T ss_pred hhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchhhhhhHh
Confidence 2222 1 11 11000 00 11224678999999999999999999999999999998 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCc
Q 013584 384 ITCFLICTAMYAGVAYMGYTMFGEST 409 (440)
Q Consensus 384 ~~a~~i~~~lY~~v~~~gy~~fG~~~ 409 (440)
..++.+++++|++...+.-...|.+.
T Consensus 238 ~~~~~~~~v~y~~~~~~~~~~~~~~~ 263 (478)
T PF00324_consen 238 LLSVLRIGVFYVLTSYALTLAVPYDN 263 (478)
T ss_pred hhhhhhhhhhhhhhhhhcccccCccc
Confidence 99999999999999988777776544
No 51
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.28 E-value=4.4e-10 Score=118.01 Aligned_cols=227 Identities=12% Similarity=0.129 Sum_probs=122.5
Q ss_pred CCCCCHHHHHHHHHHhhhccccchhHHHHHhhCHHHHHHHHHHHHHH--HHHHHHHHHhhhcCC-CCCCHHHHHHHHhhh
Q 013584 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLS--FYTGILLRRCLDSEP-GLETYPDIGQAAFGT 237 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~GiLslP~a~~~~G~~g~illi~~g~l~--~~t~~lL~~~~~~~~-~~~sy~~i~~~~fG~ 237 (440)
+++++.++.+++.+..+++. ..+| .+++.|+-. +.+.+++.+. .-.+..++|+....| ........+++++|+
T Consensus 3 ~~~l~~~~~~~~~~~~v~~~--~~~~-~~a~~G~~~-i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G~ 78 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVLAV--YEYP-TFATSGFHL-VFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLGE 78 (507)
T ss_pred CcEeeHHHHHHHHHHHHHHH--HhhH-HHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccCc
Confidence 56799999999999888754 5777 466778533 3333443333 235566666654433 333444459999999
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhc--cccccCcCccccchhHHHHHHHHHHHHhhhh--cccchhHHHHHH
Q 013584 238 AGRIAVSVILYAELYACCIEYIILESDNLSSLF--PNAHLSFGGFYLNSHHLFALMTTLAVLPTCW--LRDLTVLSYISA 313 (440)
Q Consensus 238 ~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~--~r~l~~l~~~s~ 313 (440)
+++++..|..|+.........+......+...+ +.... + .....++..++++.+++ .+..+...+++.
T Consensus 79 ~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~~~~~~-------~-~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~~ 150 (507)
T TIGR00910 79 RFGFAAIFFGWFQIAIGFIPMIYFILGALSYILKFPALNE-------D-PIIKFIAALIIFWALAFSQFGGTKRTAKIAK 150 (507)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcc-------C-cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999988888777654332222222222222222 11110 0 11111111222222222 334444444443
Q ss_pred HHHHHHHHH-HHHhhh---hhccccc--CCC--CCCCCCCC--CchHHHHHHHHHHhhcccchHHHHhhccCCCC-hhhH
Q 013584 314 GGVIASILV-VLCLFW---VGLVDQV--NIH--SKGTPLNL--ATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKV 382 (440)
Q Consensus 314 ~~~i~~i~~-ii~ii~---~~~~~~~--~~~--~~~~~~~~--~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k-~~~a 382 (440)
++.+..+++ ++.++. .....+. ..+ ......++ .+....+..++|+|.|.+.+....+|+|||+| +||+
T Consensus 151 i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~PrA 230 (507)
T TIGR00910 151 AGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDYPLA 230 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCcccccHH
Confidence 332211111 111111 1111110 001 00101111 12344555579999999999999999999998 9999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013584 383 LITCFLICTAMYAGVAY 399 (440)
Q Consensus 383 i~~a~~i~~~lY~~v~~ 399 (440)
+..+++++.++|.+..+
T Consensus 231 i~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 231 MILLMIAAICLDAIGGF 247 (507)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987554
No 52
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.27 E-value=1.1e-09 Score=114.35 Aligned_cols=238 Identities=11% Similarity=0.138 Sum_probs=129.1
Q ss_pred CCCHHHHHHHHHHhhhccccchhHHHHHhhCHHHHHHHHHHHHHHH-HHHHHHHHhhhcCCCCCCHHHHHHHHhhhhHhH
Q 013584 163 QSSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSF-YTGILLRRCLDSEPGLETYPDIGQAAFGTAGRI 241 (440)
Q Consensus 163 ~~s~~~~~~~ii~~iIG~GiLslP~a~~~~G~~g~illi~~g~l~~-~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~~~ 241 (440)
|++.+..+++.+..+++.. .+|.+ ++.|+..++.+++.+++.. -.+...+|+....|.........++++|+++++
T Consensus 2 ~~~~~~l~~~~~~~v~~~~--~~~~~-a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~~gf 78 (474)
T TIGR03813 2 KLTVVTLAIMNITAVVSLR--GLPAE-AEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGARWGF 78 (474)
T ss_pred cccHHHHHHHHHHHHHHhh--cchHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChhHHH
Confidence 4778887777777776665 45654 5788755555555555443 355566666555555555556699999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhh--cccchhHHHHHHHH-HHH
Q 013584 242 AVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCW--LRDLTVLSYISAGG-VIA 318 (440)
Q Consensus 242 l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~--~r~l~~l~~~s~~~-~i~ 318 (440)
+..|.+++........-+...+..+..+.+..... .. ....+.....+..++++.+++ .+.++..+.++.+. ++.
T Consensus 79 ~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~~~~ 156 (474)
T TIGR03813 79 LAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATVD-ES-LAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWGGIVG 156 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccC-cc-cccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 99998888654322222222222222222111000 00 001111221222222222232 33455444444332 111
Q ss_pred HHHHHHHhhhhhc----c-cccCCCC--C---CCCCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCC-hhhHHHHHH
Q 013584 319 SILVVLCLFWVGL----V-DQVNIHS--K---GTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLITCF 387 (440)
Q Consensus 319 ~i~~ii~ii~~~~----~-~~~~~~~--~---~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k-~~~ai~~a~ 387 (440)
.++.++.+++.++ . .....+. . +...++..+..+. .+.|+|.|++.+....+|+|||+| +||++..+.
T Consensus 157 ~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~ 235 (474)
T TIGR03813 157 TIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAA-SIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAA 235 (474)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHH-HHHHHHhchhHhHHHHHhccCcccchhHHHHHHH
Confidence 1111111111111 1 1111110 0 1111334444443 467999999999999999999998 999999999
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 013584 388 LICTAMYAGVAYMGYTMFG 406 (440)
Q Consensus 388 ~i~~~lY~~v~~~gy~~fG 406 (440)
.+++++|++..+......+
T Consensus 236 ~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 236 LGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHHHHHHHHHHhccC
Confidence 9999999987776554444
No 53
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=99.01 E-value=5.6e-09 Score=93.09 Aligned_cols=213 Identities=15% Similarity=0.188 Sum_probs=140.9
Q ss_pred CCHHHHHHHHHHhhhccccchhHHHHHhhCHH-HHHHHHHHHHHHHHHHHHHHHhhhc----------------------
Q 013584 164 SSYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDS---------------------- 220 (440)
Q Consensus 164 ~s~~~~~~~ii~~iIG~GiLslP~a~~~~G~~-g~illi~~g~l~~~t~~lL~~~~~~---------------------- 220 (440)
.|..-...-.+|-++|.|-|++|.+|+.+||+ ++.++.+.++.++.++..+.+.+..
T Consensus 12 ysq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~s 91 (319)
T KOG3832|consen 12 YSQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDES 91 (319)
T ss_pred hhhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhcccccc
Confidence 45555667789999999999999999999997 9999999999999888777654320
Q ss_pred ------------------CC----------------CCCCHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 013584 221 ------------------EP----------------GLETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNL 266 (440)
Q Consensus 221 ------------------~~----------------~~~sy~~i~~~~fG~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l 266 (440)
+| .....++++...|.|.+-.+.-++++++++|-..+|....--.+
T Consensus 92 tasd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~ 171 (319)
T KOG3832|consen 92 TASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSA 171 (319)
T ss_pred ccCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHh
Confidence 00 11356778888999999888889999999999998877655544
Q ss_pred hhhccccc----------cC--cCccccc-------h-hHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 013584 267 SSLFPNAH----------LS--FGGFYLN-------S-HHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCL 326 (440)
Q Consensus 267 ~~~~~~~~----------~~--~~~~~~~-------~-~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i~~i~~ii~i 326 (440)
.++..... .+ .....|. . +.+.+|...++.+|+++. ++...+++.++-.+.-....+..
T Consensus 172 m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~~g 250 (319)
T KOG3832|consen 172 MNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFILG 250 (319)
T ss_pred hhhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhccch
Confidence 44432210 00 0001111 1 133344455556688876 77777777765555544443333
Q ss_pred hhhhccc-cc-CCCCCCCCCCCCchHHHHHHHHHHhhcccchHHHHhhccCCC
Q 013584 327 FWVGLVD-QV-NIHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPN 377 (440)
Q Consensus 327 i~~~~~~-~~-~~~~~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~ 377 (440)
+..+... .- .-...++...+-++...++..+|+|.+|...|.....++.+.
T Consensus 251 ~~l~tmqaeedaa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k~ 303 (319)
T KOG3832|consen 251 ISLATMQAEEDAAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTKD 303 (319)
T ss_pred hhhhhhhhcccccccCCccccccccccccchhhHHHHhhccCCCCCCCCeecc
Confidence 3332111 10 111223345667778888999999999999999888777554
No 54
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.59 E-value=8.7e-06 Score=78.45 Aligned_cols=225 Identities=12% Similarity=0.049 Sum_probs=136.4
Q ss_pred HHHHHHHHhhhccccchhHH-HH---HhhCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhhHhHHH
Q 013584 168 QALLNGMNVLCGVGILSTPY-AA---KEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIAV 243 (440)
Q Consensus 168 ~~~~~ii~~iIG~GiLslP~-a~---~~~G~~g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~~~l~ 243 (440)
+-.+..+++++|+|. +... .+ ..-|+-|....++++++-..++..+.+.. ++-+..+|.|+.+..+|++...+.
T Consensus 7 ~~~f~~ig~~vGAGf-AsGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig-~~f~a~~y~~~~~~v~~~~~~ki~ 84 (349)
T COG3949 7 RWAFAFIGTVVGAGF-ASGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIG-KKFNATSYREILKYVSGPKFAKII 84 (349)
T ss_pred HHHHHHHHHhhcccc-cchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHhcccchHHHHHHHhhHHHHHHH
Confidence 445677889999994 4443 33 34466678888888888888888887776 455667999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHH-HHHHHHHHhhhhcccchhHHHHHHHHHHHHHHH
Q 013584 244 SVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFA-LMTTLAVLPTCWLRDLTVLSYISAGGVIASILV 322 (440)
Q Consensus 244 ~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-ii~~liv~pl~~~r~l~~l~~~s~~~~i~~i~~ 322 (440)
++.+.+.+++.++.-+...+..+.+.+.- + .++. ++..+.+..+.++++.+.+-.+..+-+...+.+
T Consensus 85 d~~iif~lf~~~vVM~AGags~~~e~~~l---P---------~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P~LIi~ 152 (349)
T COG3949 85 DIIIIFFLFSTAVVMLAGAGSLLEEMFGL---P---------YWIGALIIILLVLILLFLGRVEGIITVNGIITPFLIII 152 (349)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHhCc---c---------HHHHHHHHHHHHHHHHHHhcccceeeeheeHHHHHHHH
Confidence 99999999999998888888787777632 1 2333 444444444445555666655544333333322
Q ss_pred HHHhhhhhcccccCCCC-CCCCCCCCchHHHHHHHHHHhh-cccchHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHH
Q 013584 323 VLCLFWVGLVDQVNIHS-KGTPLNLATLPVAIGLYGYCYS-GHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAGVAYM 400 (440)
Q Consensus 323 ii~ii~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~faf~-g~~~i~~i~~emk~p~k~~~ai~~a~~i~~~lY~~v~~~ 400 (440)
.+.+.........+... ......+.....+.+-..+... +..++.++-++|++++...++...+-++.+++..+....
T Consensus 153 l~~v~~~~~f~~~~~~a~~~~~~~~~W~~~~~~Y~alNi~~~~avLv~lg~~~~~~~~~~~g~l~gglIlgvl~~l~nls 232 (349)
T COG3949 153 LVLVTLSFQFTNLGNAAQIVLTKQGNWKASAVGYGALNILVAVAVLVPLGGRMESRKVSGIGGLIGGLILGVLLFLINLS 232 (349)
T ss_pred HHHHHHHHHHhhccchhhhcCCcCCChHHHHHhhhhHHHHhHhHhhhhhcccccccchhhhhhhhhhHHHHHHHHHHHHH
Confidence 22222111111111111 1111122222233332222222 455667777999999986666666666666665555555
Q ss_pred HHHHhc
Q 013584 401 GYTMFG 406 (440)
Q Consensus 401 gy~~fG 406 (440)
-...++
T Consensus 233 Li~~~~ 238 (349)
T COG3949 233 LIALYD 238 (349)
T ss_pred HHhhcc
Confidence 555555
No 55
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.53 E-value=1.3e-05 Score=82.15 Aligned_cols=256 Identities=12% Similarity=0.052 Sum_probs=141.1
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhc-ccc-chhHHHHHhhCHHHHHH-HHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHH
Q 013584 157 EHPISRQSSYAQALLNGMNVLCG-VGI-LSTPYAAKEGGWFGLLI-LVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQA 233 (440)
Q Consensus 157 ~~~~~~~~s~~~~~~~ii~~iIG-~Gi-LslP~a~~~~G~~g~il-li~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~ 233 (440)
+.+.+|+.++++.+...++.+-= .|+ -++.+.+..+|..+++. +++.+.++..++.-|+|.+...|......--+..
T Consensus 43 kqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsGgLy~waa~ 122 (550)
T KOG1289|consen 43 KQELKREFSLFSIFGISFSLMGLLPGIATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSGGLYFWAAV 122 (550)
T ss_pred chhhhhhhhHHHHHHHHHHHhcchhhhhhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCCcHHHHHHH
Confidence 34457888888877666554311 122 24455666677654333 4566666677778888888777754444333333
Q ss_pred Hh----hhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhc--ccchh
Q 013584 234 AF----GTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWL--RDLTV 307 (440)
Q Consensus 234 ~f----G~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~--r~l~~ 307 (440)
.- |+...+++.+..++.......+-.-..++.+.....-.. +++...+.+.+ ++..++.+..+++ ...+.
T Consensus 123 lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~n---p~y~~~~~~~~-~v~~ai~~v~~lln~~p~r~ 198 (550)
T KOG1289|consen 123 LAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTN---PNYEPTNYHQF-GVFEAILFVHGLLNSLPTRV 198 (550)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcC---CCCcccceEee-hHHHHHHHHHHHHhcCCcHH
Confidence 33 444445555555554333322222223333322222111 11212221222 2222222222222 24567
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcc---cccCCCC-------CCCCCCCC----chHHHHHHHHHHhhcccchHHHHhhc
Q 013584 308 LSYISAGGVIASILVVLCLFWVGLV---DQVNIHS-------KGTPLNLA----TLPVAIGLYGYCYSGHAVFPNIYTSM 373 (440)
Q Consensus 308 l~~~s~~~~i~~i~~ii~ii~~~~~---~~~~~~~-------~~~~~~~~----~~~~a~~~~~faf~g~~~i~~i~~em 373 (440)
+.+++.+++...++.++.+++.... ++.++.. .....+|. .+..++-...|++.|......+.+|.
T Consensus 199 l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~ 278 (550)
T KOG1289|consen 199 LARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEET 278 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHHh
Confidence 7777777776666544443332211 1111221 11123333 35666777889999999999999999
Q ss_pred cCCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhcC
Q 013584 374 AQPNQ-FPKVLITCFLICTAMYAGVAYMGYTMFGESTLSQFTLN 416 (440)
Q Consensus 374 k~p~k-~~~ai~~a~~i~~~lY~~v~~~gy~~fG~~~~~~il~n 416 (440)
||++| .||+++.+..+..++=.++-+.-..+-+++....+..+
T Consensus 279 ~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~ 322 (550)
T KOG1289|consen 279 KNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSS 322 (550)
T ss_pred cchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCC
Confidence 99998 99999999999988877777776667675444444444
No 56
>PRK12488 acetate permease; Provisional
Probab=98.30 E-value=0.00019 Score=76.23 Aligned_cols=151 Identities=10% Similarity=0.017 Sum_probs=103.8
Q ss_pred CCCCCHHHHHHHHHHhhhccc-cchhHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhh-hh
Q 013584 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFG-TA 238 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~G-iLslP~a~~~~G~~g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG-~~ 238 (440)
.|+.+++...+.+..+.++++ +++.|......|+.++...+...+-......++.+-. ++.+..|.+|+.+.-|| +.
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~~~~~~g~~~g~~~~~~~~a~~l-r~~g~~T~~d~l~~Rf~s~~ 144 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDGLLYALGVLAGWPIILFLIAERL-RNLGKYTFADVVSYRLAQGP 144 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcchHHHHHHHcCCCc
Confidence 788999999999999999998 6789987777887543222211111111223344444 45566899999988887 66
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHH
Q 013584 239 GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIA 318 (440)
Q Consensus 239 ~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i~ 318 (440)
.|.+..+...+.........+...+..++.++. .+ .....++.+++++..+.+-.++...|...++.+.
T Consensus 145 ~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g-i~----------~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~i 213 (549)
T PRK12488 145 VRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG-IS----------YLYAVVIVGALMVLYVTFGGMLATTWVQIIKAVL 213 (549)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC----------HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 888888877777777777788888888877752 21 1233445555666677778899999988888765
Q ss_pred HHHHH
Q 013584 319 SILVV 323 (440)
Q Consensus 319 ~i~~i 323 (440)
+++.+
T Consensus 214 m~~~~ 218 (549)
T PRK12488 214 LLSGT 218 (549)
T ss_pred HHHHH
Confidence 55433
No 57
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.24 E-value=0.00046 Score=71.43 Aligned_cols=246 Identities=10% Similarity=0.029 Sum_probs=143.8
Q ss_pred CCCCCHHHHHHHHHHhhhccccchhHHHHHhhC--HH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhh
Q 013584 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGG--WF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGT 237 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~GiLslP~a~~~~G--~~-g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~ 237 (440)
+|+-++++.+..-++..+...-+.+.......| +- +++..++..++.+.-..+.+.... +.+ .++.-+.+..||.
T Consensus 11 ~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~-r~G-l~~~v~sR~~FG~ 88 (442)
T TIGR00800 11 ERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGA-KYG-LPFPVLSRASFGI 88 (442)
T ss_pred cCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHH-HhC-CCcchhhhhhhhh
Confidence 556688888887777777766666655444333 33 444444444444444444444442 233 2677889999999
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccc--cc-hhHHHHHHHHHHHHhhhhcccchhHHHHHHH
Q 013584 238 AGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFY--LN-SHHLFALMTTLAVLPTCWLRDLTVLSYISAG 314 (440)
Q Consensus 238 ~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~--~~-~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~ 314 (440)
++..+..++..+...+.........++.+..++........... +. ......++..++.+++..+...+..++....
T Consensus 89 ~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~~~~~ 168 (442)
T TIGR00800 89 YGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKIRHLFEWL 168 (442)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 99999999999999999988888888877666544321100000 00 1123334444455555555555555555555
Q ss_pred HHHHHHHHHHHhhhhhcccc--cC-CCCC---CCCCCCCchHHHHHHHH-HHhhcccchHHHHhhccCCCChhhHHHHHH
Q 013584 315 GVIASILVVLCLFWVGLVDQ--VN-IHSK---GTPLNLATLPVAIGLYG-YCYSGHAVFPNIYTSMAQPNQFPKVLITCF 387 (440)
Q Consensus 315 ~~i~~i~~ii~ii~~~~~~~--~~-~~~~---~~~~~~~~~~~a~~~~~-faf~g~~~i~~i~~emk~p~k~~~ai~~a~ 387 (440)
+.+..+++++.+++.....+ .. .+.. ........+..++...+ +.-..-.+.+.+.+.+|+++.-.+...+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~~~~~~~~~~~ 248 (442)
T TIGR00800 169 AVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKKTAIWGQFLAL 248 (442)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCccchHHHHHHHH
Confidence 55544444443333322111 01 1111 11222344555555433 233455688999999999888666677888
Q ss_pred HHHHHHHHHHHHHHHHH----hcCC
Q 013584 388 LICTAMYAGVAYMGYTM----FGES 408 (440)
Q Consensus 388 ~i~~~lY~~v~~~gy~~----fG~~ 408 (440)
....++..++++++-.. +|+.
T Consensus 249 ~~~~~~~~~~g~~~a~~~~~~~g~~ 273 (442)
T TIGR00800 249 PGGFTLTCFFGILGAAAAYAAYGEP 273 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 88888888888877766 8754
No 58
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.22 E-value=0.00032 Score=71.80 Aligned_cols=150 Identities=14% Similarity=0.024 Sum_probs=104.7
Q ss_pred CCCCCHHHHHHHHHHhhhccc-cchhHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhh-h
Q 013584 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGT-A 238 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~G-iLslP~a~~~~G~~g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~-~ 238 (440)
.|+.+++...+.++.+.+|++ +++.|......|+.++...+...+.....+.++.... ++.+..|.+|+.+.-||+ .
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~T~~e~l~~Ryg~~~ 80 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIF-INNGAYTMPEYLEKRFGKRI 80 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCchhHHHHHHhCchH
Confidence 578899999999999999987 6788887667776433222222233334445555544 455678999999999998 5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHH
Q 013584 239 GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIA 318 (440)
Q Consensus 239 ~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i~ 318 (440)
.+.+..+...+..+...+..+...+..++.++. .+ .....++.+++++..+.+-.++...+.-.++.+.
T Consensus 81 ~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g-i~----------~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i 149 (407)
T TIGR00813 81 LRGLSVLSLILYIFLYMSVDLFSGALLIELITG-LD----------LYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVI 149 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ch----------HHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 777777777777778888888888888887763 21 1234445555566667777899999888888766
Q ss_pred HHHH
Q 013584 319 SILV 322 (440)
Q Consensus 319 ~i~~ 322 (440)
+++.
T Consensus 150 ~~~~ 153 (407)
T TIGR00813 150 MILG 153 (407)
T ss_pred HHHH
Confidence 5543
No 59
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=98.19 E-value=0.00022 Score=71.87 Aligned_cols=217 Identities=16% Similarity=0.187 Sum_probs=120.5
Q ss_pred HHHHHhhhccccchhHHH-HHhhC--HH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhhHhHHHHHH
Q 013584 171 LNGMNVLCGVGILSTPYA-AKEGG--WF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIAVSVI 246 (440)
Q Consensus 171 ~~ii~~iIG~GiLslP~a-~~~~G--~~-g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~~~l~~~~ 246 (440)
+.++.-.+|+|.|-.|.. -+++| |. +++.+++.|+..-..+.+ ...+.+ .+|.++.++ +||+..++..+.
T Consensus 2 ~~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~---av~~~g--G~~~~l~~~-~g~~f~~lf~~~ 75 (378)
T TIGR00796 2 FMLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI---ALALVG--GGYDSLSAR-IGKVFGILFTVI 75 (378)
T ss_pred hHHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---eeeecC--CCHHHHHHH-hChHHHHHHHHH
Confidence 456778899999999865 45555 33 566666666555444433 222233 367776655 567777777666
Q ss_pred HHHHHH-------HHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHH
Q 013584 247 LYAELY-------ACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIAS 319 (440)
Q Consensus 247 ~~~~~~-------~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i~~ 319 (440)
.++... ...++|-+. +.++++.... .. ....+.++...+++-++ +|.-+...++..+-+.+.
T Consensus 76 ~~l~iGP~~aiPRtaa~s~e~~----i~p~~~~~~~---~~---~l~i~siiff~i~~~l~-~~~~k~~~~iGk~LTP~l 144 (378)
T TIGR00796 76 LYLTIGPLFAIPRTATVSFEMG----IAPLLHSPTS---LL---ALFIFSLIFFAVVLLLS-LNPSKLIDRVGKFLTPAL 144 (378)
T ss_pred HHHHHHhchhhhHHHHHHHHHH----HHhccCcccc---hH---HHHHHHHHHHHHHHHHH-cCcccHHHHhHHHHHHHH
Confidence 654322 222333322 4455543110 00 01122222222222222 345555556666556666
Q ss_pred HHHHHHhhhhhcccccCC-CCCCCCCCC-CchHHHHHHHHHHhh-------cccchHHHHh-hccCCCC-hhhHHHHHH-
Q 013584 320 ILVVLCLFWVGLVDQVNI-HSKGTPLNL-ATLPVAIGLYGYCYS-------GHAVFPNIYT-SMAQPNQ-FPKVLITCF- 387 (440)
Q Consensus 320 i~~ii~ii~~~~~~~~~~-~~~~~~~~~-~~~~~a~~~~~faf~-------g~~~i~~i~~-emk~p~k-~~~ai~~a~- 387 (440)
++.++.+++.++....+. ..+.....- ..+..++-...++|. |+.++..+.+ ++|||+| .++++..+.
T Consensus 145 Li~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G~i 224 (378)
T TIGR00796 145 LVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAGLI 224 (378)
T ss_pred HHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 666666777776653321 111111111 346777777788888 9999999988 9999987 676666555
Q ss_pred --HHHHHHHHHHHHHHHHH
Q 013584 388 --LICTAMYAGVAYMGYTM 404 (440)
Q Consensus 388 --~i~~~lY~~v~~~gy~~ 404 (440)
+....+|...+.+|...
T Consensus 225 a~i~l~~vY~~L~~lGa~~ 243 (378)
T TIGR00796 225 AAVLLAFIYLSLFYLGATS 243 (378)
T ss_pred HHHHHHHHHHHHHHHhcCc
Confidence 44555666666666543
No 60
>PRK09395 actP acetate permease; Provisional
Probab=98.19 E-value=0.00056 Score=72.82 Aligned_cols=149 Identities=12% Similarity=0.064 Sum_probs=100.7
Q ss_pred CCCCCHHHHHHHHHHhhhccc-cchhHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhh-hh
Q 013584 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFG-TA 238 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~G-iLslP~a~~~~G~~g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG-~~ 238 (440)
.|+.+++...+.+..+.+|++ +++.|......|+.++...+..++.......++.+-. ++.+..|++|+.+.-|| +.
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~~~~~~~g~~~~~~~~~~~~-r~~g~~T~~d~l~~Rygs~~ 146 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGFLVGWPIILFLIAERL-RNLGKYTFADVASYRLKQGP 146 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCccHHHHHHHHcCCch
Confidence 788999999999999999987 6788987777787543222211111122233344444 45667899999998888 55
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHH
Q 013584 239 GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIA 318 (440)
Q Consensus 239 ~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i~ 318 (440)
.|.+..+...+.........+...+..++.++. .+ .....++..++++..+.+-.++...|...++.+.
T Consensus 147 ~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g-i~----------~~~~ili~~~i~~iYt~~GGm~av~~TD~iQ~ii 215 (551)
T PRK09395 147 IRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG-LN----------YHVAVVLVGVLMMVYVLFGGMLATTWVQIIKAVL 215 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC----------HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 888877777666666666777777777777653 21 1344455555666667777888888888877655
Q ss_pred HHH
Q 013584 319 SIL 321 (440)
Q Consensus 319 ~i~ 321 (440)
+++
T Consensus 216 m~~ 218 (551)
T PRK09395 216 LLS 218 (551)
T ss_pred HHH
Confidence 444
No 61
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.15 E-value=0.00077 Score=70.38 Aligned_cols=233 Identities=13% Similarity=0.036 Sum_probs=135.6
Q ss_pred CCCCCHHHHHHHHHHhhhccc-cchhHHHHHhhCHHH-HHHH--HHHHHHH-HHHHHHHHHhhhcCCCCCCHHHHHHHHh
Q 013584 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWFG-LLIL--VAFGVLS-FYTGILLRRCLDSEPGLETYPDIGQAAF 235 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~G-iLslP~a~~~~G~~g-~ill--i~~g~l~-~~t~~lL~~~~~~~~~~~sy~~i~~~~f 235 (440)
.|+.+++...+.++.+.+|++ +++.|....+.|+.. .... ..++.++ .+.+..+.+.. ++.+..|++|+.++-|
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~T~~e~l~~Ry 117 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIIS-RKYNAITINDVLKARY 117 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCccHHHHHHHHc
Confidence 688999999999999999998 667887666667531 1111 1111111 11122233333 4567789999999999
Q ss_pred hhh-HhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHH
Q 013584 236 GTA-GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAG 314 (440)
Q Consensus 236 G~~-~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~ 314 (440)
|++ .+.+..+...+.+++..++.+...+..++.++. .+ .....++.+++++..+.+..++...+...+
T Consensus 118 g~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g-i~----------~~~~iii~~~iv~iYt~~GG~~av~~td~i 186 (471)
T TIGR02119 118 NNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG-LS----------YLTALFIFSSSVLIYTTFGGFRAVALTDAI 186 (471)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CC----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 955 467777777777777777777777888877763 21 123444555556667777899999999888
Q ss_pred HHHHHHHHHHHhhhhhcccccCC----------CCCC-CCC---CCC--chHHHHH-HHHHHhhcccchHHHHhhccCCC
Q 013584 315 GVIASILVVLCLFWVGLVDQVNI----------HSKG-TPL---NLA--TLPVAIG-LYGYCYSGHAVFPNIYTSMAQPN 377 (440)
Q Consensus 315 ~~i~~i~~ii~ii~~~~~~~~~~----------~~~~-~~~---~~~--~~~~a~~-~~~faf~g~~~i~~i~~emk~p~ 377 (440)
..+..++.++.+......+..++ ++.. .+. ++. .+..++. ...++..+.+....-.-..|+++
T Consensus 187 Q~~v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~R~~aak~~~ 266 (471)
T TIGR02119 187 QGIVMFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWILVGIGVIGLPQTAVRCMSYKDSK 266 (471)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHHHHHHHHhCchHHHHHHHhcCCHH
Confidence 87655544333332221111000 0000 011 111 1111221 12233334433333344567777
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 013584 378 QFPKVLITCFLICTAMYAGVAYMGYTMF 405 (440)
Q Consensus 378 k~~~ai~~a~~i~~~lY~~v~~~gy~~f 405 (440)
..+|+..++.++..++++.+.+.|..+.
T Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~G~~a~ 294 (471)
T TIGR02119 267 AMHRAMIIGTIVVGIIMLGMHLAGVLGR 294 (471)
T ss_pred HHhhhHhHHHHHHHHHHHHHHHHHHhhh
Confidence 7888888887777777776666665543
No 62
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.14 E-value=0.00094 Score=69.96 Aligned_cols=232 Identities=13% Similarity=0.026 Sum_probs=131.1
Q ss_pred CCCCCHHHHHHHHHHhhhccc-cchhHHHHHhhCHHHHHH---HHHHHHHH-HHHHHHHHHhhhcCCCCCCHHHHHHHHh
Q 013584 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWFGLLI---LVAFGVLS-FYTGILLRRCLDSEPGLETYPDIGQAAF 235 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~G-iLslP~a~~~~G~~g~il---li~~g~l~-~~t~~lL~~~~~~~~~~~sy~~i~~~~f 235 (440)
.|+.+++...+.++.+.+|++ ++..|....+.|+..... ....+.++ .+.+..+.+.. ++.+..|++|+.++-|
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~T~~e~l~~Ry 118 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILA-RKYNAVTLNDMLRARY 118 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCccHHHHHHHHh
Confidence 688999999999999999887 667886655556531111 11111111 12222333333 4567789999999999
Q ss_pred hhh-HhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHH
Q 013584 236 GTA-GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAG 314 (440)
Q Consensus 236 G~~-~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~ 314 (440)
|++ .+.+..+...+..+......+...+..++.++. .+ .....++.+++++..+.+..++...+.-.+
T Consensus 119 g~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g-i~----------~~~~iii~~~iv~iYt~~GGl~av~~TD~i 187 (483)
T PRK09442 119 QSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG-IS----------YETGLLIFGITVALYTAFGGFRAVVLTDAL 187 (483)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC----------HHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 865 455656555555666666777777777777763 21 124445555666777778899999988888
Q ss_pred HHHHHHHHHHHhhhhhccc---------cc-CCCC----CCCCCCCCchHHHHH---HHHHHhhcccchHHHHhhccCCC
Q 013584 315 GVIASILVVLCLFWVGLVD---------QV-NIHS----KGTPLNLATLPVAIG---LYGYCYSGHAVFPNIYTSMAQPN 377 (440)
Q Consensus 315 ~~i~~i~~ii~ii~~~~~~---------~~-~~~~----~~~~~~~~~~~~a~~---~~~faf~g~~~i~~i~~emk~p~ 377 (440)
+.+..++.++.+.+..... .. ..++ +....++......+. ...+...+.+....=.-..|+++
T Consensus 188 Q~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~aaks~~ 267 (483)
T PRK09442 188 QGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVIGLPHTAVRCMSYKDSK 267 (483)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHhCCCHHHHHHHHcCCHH
Confidence 8665554433322211110 00 0000 000111111221111 12233334433322233467777
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013584 378 QFPKVLITCFLICTAMYAGVAYMGYTM 404 (440)
Q Consensus 378 k~~~ai~~a~~i~~~lY~~v~~~gy~~ 404 (440)
..+|+..++..+..++++.+.+.|...
T Consensus 268 ~a~~~~~~~~~~~~~~~~~~~~~G~~~ 294 (483)
T PRK09442 268 ALHRGIIIGTIVVGFLMFGMHLAGALG 294 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788988888877777777666666443
No 63
>PRK11375 allantoin permease; Provisional
Probab=98.07 E-value=0.0024 Score=66.81 Aligned_cols=246 Identities=12% Similarity=-0.030 Sum_probs=126.1
Q ss_pred CCCCCHHHHHHHHHHhhhccccchhHHHHHhhC--HH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhh
Q 013584 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGG--WF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGT 237 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~GiLslP~a~~~~G--~~-g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~ 237 (440)
+|+-++++.+..-++..+..+.+.+..+.-..| +- +++.+++..++...-..+.+.... +.+ .++.-+.+..||.
T Consensus 24 ~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~-~~G-l~~~v~sR~sFG~ 101 (484)
T PRK11375 24 QRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMLAIILSAFFIAAVMVLNGAAGS-KYG-VPFAMILRASYGV 101 (484)
T ss_pred ccCCcHHHHHHHHHHHhccHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHhccccc-ccC-CChhHhHHHHHcc
Confidence 566787777777666666555443332222233 22 333333333333333344444332 222 3788899999999
Q ss_pred hHhHHHHHHHH-HHHHHHHHHHHHHHHhhHhh----hcccccc---CcCccccch-hHHHHHHHHHHHHhhhhcccchhH
Q 013584 238 AGRIAVSVILY-AELYACCIEYIILESDNLSS----LFPNAHL---SFGGFYLNS-HHLFALMTTLAVLPTCWLRDLTVL 308 (440)
Q Consensus 238 ~~~~l~~~~~~-~~~~~~~v~y~i~~~~~l~~----~~~~~~~---~~~~~~~~~-~~~~~ii~~liv~pl~~~r~l~~l 308 (440)
+|.++..++.. +...+-........++.+.. +++.... ..+...+.. .....++..++.+++.+ ...+.+
T Consensus 102 ~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~~-~g~~~i 180 (484)
T PRK11375 102 RGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIGF-GGGKVL 180 (484)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHHHHHHH-cCHHHH
Confidence 99888877764 45555555555566665553 3332110 000011111 12223344455556554 367777
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccc-ccC----CCCCCCC---CCCCchHHHHHHHHHHhh-cccchHHHHhhccCCCCh
Q 013584 309 SYISAGGVIASILVVLCLFWVGLVD-QVN----IHSKGTP---LNLATLPVAIGLYGYCYS-GHAVFPNIYTSMAQPNQF 379 (440)
Q Consensus 309 ~~~s~~~~i~~i~~ii~ii~~~~~~-~~~----~~~~~~~---~~~~~~~~a~~~~~faf~-g~~~i~~i~~emk~p~k~ 379 (440)
+++..++....+++++.+.+..+.. +.+ ..+.... .....+..++...+=++. +..+.|.+.+..|++++.
T Consensus 181 ~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~~~~ 260 (484)
T PRK11375 181 NKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNAHSFRAQ 260 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhcccCChhhh
Confidence 7777666555544333322222111 111 1111110 011223344433333444 455889999999999886
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH----HHHhcCCc
Q 013584 380 PKVLITCFLICTAMYAGVAYMG----YTMFGEST 409 (440)
Q Consensus 380 ~~ai~~a~~i~~~lY~~v~~~g----y~~fG~~~ 409 (440)
.+...+++.+..++...+|++. ...||+..
T Consensus 261 ~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~ 294 (484)
T PRK11375 261 ALGQTLGLVVAYILFAVASVCIIAGASIHYGADT 294 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 6667777777776665555543 55777543
No 64
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.05 E-value=0.0014 Score=66.76 Aligned_cols=192 Identities=13% Similarity=0.075 Sum_probs=126.6
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhH
Q 013584 229 DIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVL 308 (440)
Q Consensus 229 ~i~~~~fG~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l 308 (440)
.+.+..||.++.++..+.+++.+.|......+..++..... ++++ ..++.++..++++.++.+ ..+.+
T Consensus 85 i~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-~~~~----------~~~~ili~g~l~~l~~if-G~r~l 152 (442)
T COG1457 85 ILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG-TGLP----------VWAGILIIGVLMTLVTIF-GYRAL 152 (442)
T ss_pred eeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-CCCc----------HHHHHHHHHHHHHHHHHH-hHHHH
Confidence 34788999999999999999999999999999998873222 3322 235555566566666655 67777
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccc--cCCCCCCCCCCCCchHHHHHHHHHHhhcc-cchHHHHhhccCCC--ChhhHH
Q 013584 309 SYISAGGVIASILVVLCLFWVGLVDQ--VNIHSKGTPLNLATLPVAIGLYGYCYSGH-AVFPNIYTSMAQPN--QFPKVL 383 (440)
Q Consensus 309 ~~~s~~~~i~~i~~ii~ii~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~faf~g~-~~i~~i~~emk~p~--k~~~ai 383 (440)
..++...++..+++.+..++..+... ........+..+.++..++..++=.+..+ .....+.+-+|+|+ |.-...
T Consensus 153 ~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~~ 232 (442)
T COG1457 153 HKLERIAVPLLLLLFLYLLALLFRSKGGLDALWVKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLAA 232 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccceeeccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHHH
Confidence 77777666666666655555544322 11222334677777887777755555544 56677788899888 655666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhcCCCCchHHHHHHHHHHHHHh
Q 013584 384 ITCFLICTAMYAGVAYMGYTMFGEST-LSQFTLNMPQDLVATKIAVWTTILRA 435 (440)
Q Consensus 384 ~~a~~i~~~lY~~v~~~gy~~fG~~~-~~~il~nlp~~~~~~~ia~~~~vi~~ 435 (440)
..+..+...+=.++|.+...+=|+.. ..++...+.. ....+.+..+++.
T Consensus 233 ~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~---~g~~~~lil~l~~ 282 (442)
T COG1457 233 VLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG---FGLPAILILVLGT 282 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc---HHHHHHHHHHHHH
Confidence 66777777777778888888888776 5555555543 3334444444433
No 65
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.04 E-value=0.0026 Score=66.73 Aligned_cols=152 Identities=21% Similarity=0.157 Sum_probs=108.5
Q ss_pred CCCCCHHHHHHHHHHhhhc-cccchhHHHHHhhCHHHHHHHH----HHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHh
Q 013584 161 SRQSSYAQALLNGMNVLCG-VGILSTPYAAKEGGWFGLLILV----AFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAF 235 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG-~GiLslP~a~~~~G~~g~illi----~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~f 235 (440)
.|+.+.+-..+...-+.++ .-++++|......|+.++-..+ ...+...+.+..+.+.. +..+..|.+|+.++-|
T Consensus 37 gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l~~Rf 115 (493)
T COG0591 37 GRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFLEARF 115 (493)
T ss_pred CCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHHHHHc
Confidence 6778888666667777777 5588999998888875322222 22333344455566666 6778889999999999
Q ss_pred h-hhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHH
Q 013584 236 G-TAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAG 314 (440)
Q Consensus 236 G-~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~ 314 (440)
| +..|.+..+...+.....+...+...+..++..+. .+ ...-.++.++++...+.+-.++...|...+
T Consensus 116 ~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i~----------~~~~~~~~~~~v~~Yt~~gG~~av~~Td~i 184 (493)
T COG0591 116 GSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-IS----------YVTGILIGALIVALYTFLGGLRAVVWTDFI 184 (493)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CC----------HHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence 9 89999999999999999999999999998876664 32 123334455566666667788888888877
Q ss_pred HHHHHHHHHH
Q 013584 315 GVIASILVVL 324 (440)
Q Consensus 315 ~~i~~i~~ii 324 (440)
..+.+++.+.
T Consensus 185 qg~im~i~~~ 194 (493)
T COG0591 185 QGLIMLIALI 194 (493)
T ss_pred HHHHHHHHHH
Confidence 7655554443
No 66
>PRK11017 codB cytosine permease; Provisional
Probab=98.01 E-value=0.0046 Score=63.23 Aligned_cols=230 Identities=12% Similarity=0.061 Sum_probs=121.7
Q ss_pred CHHHHHHHHHHhhhccccchhHHHHH-hhCHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhhHhHH
Q 013584 165 SYAQALLNGMNVLCGVGILSTPYAAK-EGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIA 242 (440)
Q Consensus 165 s~~~~~~~ii~~iIG~GiLslP~a~~-~~G~~-g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~~~l 242 (440)
++++.++.-++..+....+.....+. ..++- .++..++..++...-..+.+... .+.+ .++.-+.+..||.++..+
T Consensus 11 ~~~~~~~~~~g~~~~~~~~~~g~~l~~GLs~~~ai~aiilG~~i~~~~~~l~~~~G-~k~G-~~~~v~sR~~FG~~Gs~l 88 (404)
T PRK11017 11 GVLSLTMVMLGFTFFSASMWAGGTLGTGLSFVDFLLAVLIGNLLLGIYTAALGYIG-AKTG-LSTHLLARFSFGEKGSWL 88 (404)
T ss_pred chHhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-hccC-cCHHHHHHHHhchhHHHH
Confidence 66665444444333332221111221 12333 33333333333333333334333 2333 378899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHH
Q 013584 243 VSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILV 322 (440)
Q Consensus 243 ~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i~~i~~ 322 (440)
..+...+...+.........+..+...++ .+ . ....++..++.++..+. ..+.++++........++.
T Consensus 89 ~~~~~~i~~igW~av~~~~~~~~l~~~~~-~~---------~-~~~~~i~~~l~~~~~~~-G~~~i~~~~~~~~p~~~~~ 156 (404)
T PRK11017 89 PSLLLGFTQVGWFGVGVAMFAIPVVKATG-LD---------I-NLLIVLSGLLMTVTAYF-GISALTILSRIAVPAIALL 156 (404)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CC---------H-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 98888877777666666666666655542 11 1 12334444555555544 4555666665554444433
Q ss_pred HHHhhhhhcccccCCC--CCCCCCCCCchHHHHHHHHHHhh-cccchHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHH
Q 013584 323 VLCLFWVGLVDQVNIH--SKGTPLNLATLPVAIGLYGYCYS-GHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAGVAY 399 (440)
Q Consensus 323 ii~ii~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~faf~-g~~~i~~i~~emk~p~k~~~ai~~a~~i~~~lY~~v~~ 399 (440)
.+...+....+..+.. ....+.....+..++...+=.+. +..+.+.+.+..|++++.-.....++.+..++-.++|.
T Consensus 157 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~~~~~~~lg~~i~~~~~~~~G~ 236 (404)
T PRK11017 157 GGYSVWLAVNDVGGLDGLKAIVPAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKIAVLATMVAFFLGNSLMFIFGA 236 (404)
T ss_pred HHHHHHHHHhccCchhhhhcCCCCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCccceeehhHHHHHHHHHHHHHHHH
Confidence 3322222211111111 01112223456666655433333 45688899999998887445666666666766677777
Q ss_pred HHHHHhcCC
Q 013584 400 MGYTMFGES 408 (440)
Q Consensus 400 ~gy~~fG~~ 408 (440)
..-..+|+.
T Consensus 237 ~~a~~~~~~ 245 (404)
T PRK11017 237 AGAAVYGQA 245 (404)
T ss_pred HHHHHcCCc
Confidence 666777754
No 67
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=97.98 E-value=0.00022 Score=72.87 Aligned_cols=151 Identities=15% Similarity=0.172 Sum_probs=92.7
Q ss_pred CCCCCHHHHHHHHHHhhhccc-cchhHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhhH
Q 013584 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAG 239 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~G-iLslP~a~~~~G~~g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~ 239 (440)
.|+.+++...+.++.+.+|++ +++.|......|+.+....+..++........+.+-. ++.+..|.+|+.++-||++.
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~T~~e~~~~Ryg~~~ 83 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRL-RRSGAVTIPEYLEKRYGSKA 83 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHH-HHTT--SHHHHHHHHT-HHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhh-cccchhhhhhhhhhhcCCch
Confidence 678999999999999999987 6788887777787533333333333334444455555 36667899999999999998
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHH
Q 013584 240 --RIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVI 317 (440)
Q Consensus 240 --~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i 317 (440)
+.+..+...+.........+...+..++.++. .+ .....++..++++..+.+-.++...+...+..+
T Consensus 84 ~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g-i~----------~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~ 152 (406)
T PF00474_consen 84 LLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG-IP----------YNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGV 152 (406)
T ss_dssp -HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-------------HHHHHHHHHHHHHHTTCTT------SHHHHHHH
T ss_pred hhhhhcccccchhhhhhhhccccccccchhhccc-hh----------hhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHH
Confidence 66666656666667777788888888887763 21 134445555566667777788888888877766
Q ss_pred HHHHHH
Q 013584 318 ASILVV 323 (440)
Q Consensus 318 ~~i~~i 323 (440)
..++.+
T Consensus 153 i~~~~~ 158 (406)
T PF00474_consen 153 IMIIGA 158 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
No 68
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=97.97 E-value=0.0017 Score=69.00 Aligned_cols=148 Identities=11% Similarity=0.105 Sum_probs=98.3
Q ss_pred CCCCCHHHHHHHHHHhhhccc-cchhHHHHHhhCHHHHHHHHHHHHHHH-HHHHHHHHhhhcCCCCCCHHHHHHHHhh-h
Q 013584 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWFGLLILVAFGVLSF-YTGILLRRCLDSEPGLETYPDIGQAAFG-T 237 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~G-iLslP~a~~~~G~~g~illi~~g~l~~-~t~~lL~~~~~~~~~~~sy~~i~~~~fG-~ 237 (440)
.|+.+++...+.+..+.+++. ++..|......|+.++...+. ..+.+ ....++.+-. ++-+..|++|+.+.=|| |
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~~~~~~g-~~~~~~i~~~~~a~~l-rr~g~~T~~d~l~~Rf~s~ 143 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDGLIYSLG-FLVGWPIILFLIAERL-RNLGRYTFADVASYRLKQR 143 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHHHHH-HHcCCccHHHHHHHHcCCc
Confidence 688999998889999988876 778898777778754432221 11111 2234445544 44566899999888786 5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHH
Q 013584 238 AGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVI 317 (440)
Q Consensus 238 ~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i 317 (440)
..|.+..+...+......+..+...+..++.++. .+ ...-.++..++++..+.+-.++...|...+..+
T Consensus 144 ~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g-i~----------~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~ 212 (549)
T TIGR02711 144 PIRILSACGSLVVVALYLIAQMVGAGKLIELLFG-LN----------YHVAVVLVGILMVMYVLFGGMLATTWVQIIKAV 212 (549)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CC----------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5677777666666666666777777777777753 11 123345555566666777788888888888766
Q ss_pred HHHH
Q 013584 318 ASIL 321 (440)
Q Consensus 318 ~~i~ 321 (440)
.+++
T Consensus 213 im~~ 216 (549)
T TIGR02711 213 LLLF 216 (549)
T ss_pred HHHH
Confidence 5543
No 69
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.93 E-value=0.0054 Score=62.33 Aligned_cols=175 Identities=13% Similarity=0.059 Sum_probs=110.5
Q ss_pred CCHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhccc
Q 013584 225 ETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRD 304 (440)
Q Consensus 225 ~sy~~i~~~~fG~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~ 304 (440)
.++.-+.+..||+++..+..+...+...+-........++.+..++...... .....+.++.+++.++.+.. .
T Consensus 58 l~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~------~~~~~~~~i~~~l~~~~~~~-G 130 (386)
T TIGR02358 58 LSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGE------ESPMLWILIVGILVTLWLLS-G 130 (386)
T ss_pred cCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CchHHHHHHHHHHHHHHHHH-H
Confidence 3788899999999999999999999888888888888899888877532111 11123334444445555544 6
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhhccc-ccCCCCCCCCCCCCchHHHHHHHHHH-hhcccchHHHHhhccCCCChhhH
Q 013584 305 LTVLSYISAGGVIASILVVLCLFWVGLVD-QVNIHSKGTPLNLATLPVAIGLYGYC-YSGHAVFPNIYTSMAQPNQFPKV 382 (440)
Q Consensus 305 l~~l~~~s~~~~i~~i~~ii~ii~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~fa-f~g~~~i~~i~~emk~p~k~~~a 382 (440)
.+.++++..+..++..+..+.+.+....+ +.+.... .+.+ ..+..++....-. -......+.+.+..|+|++.-+.
T Consensus 131 ~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~~~~~ 208 (386)
T TIGR02358 131 PLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSELWN-RAGD-MSFAVAVELVIAMPLSWLPLIADYTRFARNPRHVFLG 208 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcC-CCCC-ccHHHHHHHHHHHHHHHHHHccchhhhcCCCcceehH
Confidence 67777777766665555444433222211 1110000 1111 3334343332211 12334578899999999887788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013584 383 LITCFLICTAMYAGVAYMGYTMFGES 408 (440)
Q Consensus 383 i~~a~~i~~~lY~~v~~~gy~~fG~~ 408 (440)
..+++.+...+-.++|.+...+.|+.
T Consensus 209 ~~~G~~i~~~~~~~~G~~~~~a~~~~ 234 (386)
T TIGR02358 209 TVLGYFIGSCWMYFLGLAVTLATGQT 234 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 88888888888889998887777764
No 70
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.84 E-value=0.0041 Score=66.25 Aligned_cols=148 Identities=13% Similarity=0.058 Sum_probs=98.5
Q ss_pred CCCCCHHHHHHHHHHhhhccc-cchhHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhh-
Q 013584 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTA- 238 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~G-iLslP~a~~~~G~~g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~- 238 (440)
.|+.+++...+.+..+.++++ +++.|......|+.++...+...+.....+.++..-. ++.+..|.+|+.+.-||.+
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~p~~-rr~~~~T~~e~l~~Rf~s~~ 109 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGGYVLLALLLAPYL-RKFGKYTVPDFIGDRYYSNT 109 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCccHHHHHHHHhCCCc
Confidence 788999999999999999887 6788887667786543332211111222334555555 4556789999999888854
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHH
Q 013584 239 GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIA 318 (440)
Q Consensus 239 ~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i~ 318 (440)
.+.+..+...+.........+...+..++.++. .+ .....++.+++++..+.+-.++...|.-.++.+.
T Consensus 110 ~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g-i~----------~~~~iii~~~i~~iYt~~GG~~aV~~TD~iQ~ii 178 (552)
T TIGR03648 110 ARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE-VD----------FETGVFIGMAIVFFYAVLGGMKGVTWTQVAQYIV 178 (552)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CC----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 577777666666666666667777777776653 11 1233445555666666677888888888877554
Q ss_pred HH
Q 013584 319 SI 320 (440)
Q Consensus 319 ~i 320 (440)
++
T Consensus 179 m~ 180 (552)
T TIGR03648 179 LI 180 (552)
T ss_pred HH
Confidence 44
No 71
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=97.80 E-value=0.00048 Score=72.56 Aligned_cols=163 Identities=16% Similarity=0.228 Sum_probs=100.2
Q ss_pred CCCCHHHHHHHHHHhhhccccc-hhHHHHHhhCHH-HHHHHHHHHHHHHHHHHHHHHhhhc--CCCCCCHHHHHHHHhhh
Q 013584 162 RQSSYAQALLNGMNVLCGVGIL-STPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDS--EPGLETYPDIGQAAFGT 237 (440)
Q Consensus 162 ~~~s~~~~~~~ii~~iIG~GiL-slP~a~~~~G~~-g~illi~~g~l~~~t~~lL~~~~~~--~~~~~sy~~i~~~~fG~ 237 (440)
+-.++...+.-.+..|.|+=.| =+-+.+.-+|.. |.+++++|++.++.|+.-+...+.. -+...+|..|. +.+|+
T Consensus 113 ~mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmIS-RsLGP 191 (1075)
T KOG2082|consen 113 RMGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMIS-RSLGP 191 (1075)
T ss_pred ccceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEe-cccCc
Confidence 3345566666677777777643 467888888988 8899999999999998887666532 23445786654 45677
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhH-hhhccccccC-------cCccccchhHHHHHHHHHHHHhhhhcccchhHH
Q 013584 238 AGRIAVSVILYAELYACCIEYIILESDNL-SSLFPNAHLS-------FGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLS 309 (440)
Q Consensus 238 ~~~~l~~~~~~~~~~~~~v~y~i~~~~~l-~~~~~~~~~~-------~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~ 309 (440)
-.+-.+.+++++........|++..-+++ .+++|....- ..+..+++-++...++.+++...+++ ..+.+.
T Consensus 192 EFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~-GVK~Vn 270 (1075)
T KOG2082|consen 192 EFGGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFV-GVKFVN 270 (1075)
T ss_pred cccceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHH-HHHHHH
Confidence 77777888888877777778888777765 4577654311 11112223334444444444443443 444444
Q ss_pred HHHHHHHHHHHHHHHHh
Q 013584 310 YISAGGVIASILVVLCL 326 (440)
Q Consensus 310 ~~s~~~~i~~i~~ii~i 326 (440)
.++.+.+.++++.++++
T Consensus 271 k~A~vfL~CVILSIlai 287 (1075)
T KOG2082|consen 271 KFAPVFLACVILSILAI 287 (1075)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 44444444444444443
No 72
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.80 E-value=0.0044 Score=63.19 Aligned_cols=147 Identities=16% Similarity=0.083 Sum_probs=87.1
Q ss_pred CCCCCHHHHHHHHHHhhhccc-cchhHHHHHhhCHHHHHHHHHH---HHHHHHHHHHHHHhhhcCCCCCCH-----HHHH
Q 013584 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWFGLLILVAF---GVLSFYTGILLRRCLDSEPGLETY-----PDIG 231 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~G-iLslP~a~~~~G~~g~illi~~---g~l~~~t~~lL~~~~~~~~~~~sy-----~~i~ 231 (440)
++++|.+|+.+..+...+|+| |+.+|.+++.+|.-++.-+.+. |..+.|.-..|..-.+++++..+| .++-
T Consensus 44 ~g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~ 123 (425)
T TIGR00835 44 KGGVSSFQALFTSLAARVGIGNIVGVATAIAIGGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIK 123 (425)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHH
Confidence 356999999999999999998 9999999888886454444333 334444444444444334444447 7887
Q ss_pred HHHhhhhHhHHHHHHHHHHHHH-HHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHH
Q 013584 232 QAAFGTAGRIAVSVILYAELYA-CCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSY 310 (440)
Q Consensus 232 ~~~fG~~~~~l~~~~~~~~~~~-~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~ 310 (440)
+..+||+.+.+..++ ++..++ ..........+.++..+ +. + .+...+..+++.-......++.+..
T Consensus 124 ~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~-~~--~---------~~v~~i~l~~l~~~vi~GGik~Ia~ 190 (425)
T TIGR00835 124 KGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAF-NV--P---------KLVTGIVLTVLTALIIFGGLKRIAK 190 (425)
T ss_pred HHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHc-CC--c---------HHHHHHHHHHHHHHHHhcCchHHHH
Confidence 888888877777766 333322 23333334444444322 11 1 1222333333333344557777777
Q ss_pred HHHHHHHHHH
Q 013584 311 ISAGGVIASI 320 (440)
Q Consensus 311 ~s~~~~i~~i 320 (440)
++...+..+.
T Consensus 191 v~~~lvP~m~ 200 (425)
T TIGR00835 191 ISSVVVPFMA 200 (425)
T ss_pred HHHHHHHHHH
Confidence 7776655444
No 73
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.73 E-value=0.01 Score=58.70 Aligned_cols=105 Identities=11% Similarity=0.117 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHhhhccccchhHHHHHhhCHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhhHhHH
Q 013584 164 SSYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIA 242 (440)
Q Consensus 164 ~s~~~~~~~ii~~iIG~GiLslP~a~~~~G~~-g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~~~l 242 (440)
.+.+-.+-+=+.++-|+|-+.=|-.-.+-||+ +++-+++.+++.--..-...-...-+.+.++.++++++..|++++.+
T Consensus 52 ~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~~l 131 (376)
T PF02554_consen 52 TNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGKRAKKL 131 (376)
T ss_pred CchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHHHHHHH
Confidence 56677788888999999988888777889998 66666554444433332332222233444699999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhh
Q 013584 243 VSVILYAELYACCIEYIILESDNLSS 268 (440)
Q Consensus 243 ~~~~~~~~~~~~~v~y~i~~~~~l~~ 268 (440)
..+..++.+....+++....++.+..
T Consensus 132 f~~f~~~~lilV~avF~~v~a~~~~~ 157 (376)
T PF02554_consen 132 FLIFIFFLLILVIAVFADVVANTFVN 157 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99988888888877777776666544
No 74
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.71 E-value=0.038 Score=56.85 Aligned_cols=271 Identities=13% Similarity=0.072 Sum_probs=132.3
Q ss_pred CCCCCHHHHHHHHHHhhhccccchhHHHHHhhCH--H-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhh
Q 013584 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGW--F-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGT 237 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~GiLslP~a~~~~G~--~-g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~ 237 (440)
+|+=++++-+..=++...-++-..+..+.-+.|. - .++.+++.-++....+.+-++.. .+.+ ..|+.++++.||-
T Consensus 38 ~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G-~~~g-IpFpv~~RaSFGi 115 (497)
T COG1953 38 QRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAG-SKYG-IPFPVLSRASFGI 115 (497)
T ss_pred cCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcc-cccC-CCchHHHHHHHhh
Confidence 6788888888777766665554333333223332 2 23322222222222222222222 2222 4899999999998
Q ss_pred hHhHH---HHHHHHHHHHHHHHHHH-HHHHhhHhhhccccccCcC---ccccchhHHHHHHHHHHHHhhhhcccchhHHH
Q 013584 238 AGRIA---VSVILYAELYACCIEYI-ILESDNLSSLFPNAHLSFG---GFYLNSHHLFALMTTLAVLPTCWLRDLTVLSY 310 (440)
Q Consensus 238 ~~~~l---~~~~~~~~~~~~~v~y~-i~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~ 310 (440)
++..+ ......+..||.-+-.- ..+.-.+..+++....+.. ........+...++.-++-.++..+..+.+++
T Consensus 116 ~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~~l~~~~g~~~Ir~ 195 (497)
T COG1953 116 YGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVLQLLVLFKGMESIRK 195 (497)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 77643 33333333343332100 0111123344444221111 11112223333333334444555668888888
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccC----CCCC-CCCCCCCchHHHHHHH--HHHhh--cccchHHHHhhccCCCChhh
Q 013584 311 ISAGGVIASILVVLCLFWVGLVDQVN----IHSK-GTPLNLATLPVAIGLY--GYCYS--GHAVFPNIYTSMAQPNQFPK 381 (440)
Q Consensus 311 ~s~~~~i~~i~~ii~ii~~~~~~~~~----~~~~-~~~~~~~~~~~a~~~~--~faf~--g~~~i~~i~~emk~p~k~~~ 381 (440)
+-...-.++.++++.+.+....+..+ .+.+ ............+..+ ..+|. ..-|+|.+.+.-|+|+...+
T Consensus 196 ~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~DFsRfa~s~~~~~~ 275 (497)
T COG1953 196 FETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPDFTRFAKSQKAQIW 275 (497)
T ss_pred HHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCchhhcccCChhhhhh
Confidence 77766666655554444333222111 1111 1122222122222222 22222 35788899999999876444
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHhcCC--chhhhhcCCCCchHHHHHHHHHHHH
Q 013584 382 VLITCFLICTAMYAGVA----YMGYTMFGES--TLSQFTLNMPQDLVATKIAVWTTIL 433 (440)
Q Consensus 382 ai~~a~~i~~~lY~~v~----~~gy~~fG~~--~~~~il~nlp~~~~~~~ia~~~~vi 433 (440)
.-.++..+.+.++.++| ..++..||+. -.-+|+.++.+.....-++.++.++
T Consensus 276 gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~i 333 (497)
T COG1953 276 GQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFAV 333 (497)
T ss_pred ccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHHHH
Confidence 34455555555555544 4678999998 5677888887665443233333333
No 75
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.67 E-value=0.023 Score=59.57 Aligned_cols=151 Identities=13% Similarity=0.081 Sum_probs=91.5
Q ss_pred CCCCCHHHHHHHHHHhhhccc-cchhHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhh----cCCCCCCHHHHHHHHh
Q 013584 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLD----SEPGLETYPDIGQAAF 235 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~G-iLslP~a~~~~G~~g~illi~~g~l~~~t~~lL~~~~~----~~~~~~sy~~i~~~~f 235 (440)
.|+.+++-..+.+..+.+++. +++.|......|+.+....+...+........+..-.+ ++.+..|.+|+.++-|
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~Ry 114 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSELWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENRF 114 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHHh
Confidence 688999999999988888876 56788766667875322222111111222333333221 1566789999999999
Q ss_pred hhh---HhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHH
Q 013584 236 GTA---GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYIS 312 (440)
Q Consensus 236 G~~---~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s 312 (440)
|++ .+.+..+...+.........+...+..++.++. .+ .....++..++++..+.+-.++...+.-
T Consensus 115 g~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g-i~----------~~~~iii~~~i~~~Yt~~GGl~av~~TD 183 (487)
T TIGR02121 115 NDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG-LD----------YKTGLLIGALIIVIYTFFGGFLAVSWTD 183 (487)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cc----------HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 954 344444444444444445555566666666653 11 1234445555666667777888888888
Q ss_pred HHHHHHHHHH
Q 013584 313 AGGVIASILV 322 (440)
Q Consensus 313 ~~~~i~~i~~ 322 (440)
.++.+.+++.
T Consensus 184 ~iQ~~i~~~~ 193 (487)
T TIGR02121 184 FVQGLLMFFA 193 (487)
T ss_pred HHHHHHHHHH
Confidence 8876655543
No 76
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.64 E-value=0.021 Score=60.15 Aligned_cols=149 Identities=15% Similarity=0.068 Sum_probs=94.5
Q ss_pred CCCCCHHHHHHHHHHhhhccc-cchhHHHHHhhCHHHHHHHHHHHHHH-HHHHHHH----HHhhhcCCCCCCHHHHHHHH
Q 013584 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWFGLLILVAFGVLS-FYTGILL----RRCLDSEPGLETYPDIGQAA 234 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~G-iLslP~a~~~~G~~g~illi~~g~l~-~~t~~lL----~~~~~~~~~~~sy~~i~~~~ 234 (440)
.|+.+++-..+.+..+.+++. +++.|......|+.+....+ ...+. .....++ ..-..++.+..|.+|+.++=
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~~~~~-~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~R 117 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESWIAI-GLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGR 117 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHHH
Confidence 788999999999999999998 56889877777875321111 11111 1111121 11122456778999999999
Q ss_pred hhhh---HhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHH
Q 013584 235 FGTA---GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYI 311 (440)
Q Consensus 235 fG~~---~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~ 311 (440)
||++ .+.+..+...+.....+...+...+..+..++. .+ .....++.+++++..+.+-.++...|.
T Consensus 118 y~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g-i~----------~~~~iii~~~iv~iYt~~GGl~aV~~T 186 (502)
T PRK15419 118 FEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG-MS----------YETALWAGAAATILYTFIGGFLAVSWT 186 (502)
T ss_pred hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC----------HHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9854 444455555555555555556666677766653 21 124455556677777778899999999
Q ss_pred HHHHHHHHHH
Q 013584 312 SAGGVIASIL 321 (440)
Q Consensus 312 s~~~~i~~i~ 321 (440)
-.++.+.+++
T Consensus 187 D~iQ~~imi~ 196 (502)
T PRK15419 187 DTVQASLMIF 196 (502)
T ss_pred HHHHHHHHHH
Confidence 8888765544
No 77
>PRK10484 putative transporter; Provisional
Probab=97.54 E-value=0.029 Score=59.36 Aligned_cols=159 Identities=11% Similarity=0.054 Sum_probs=87.5
Q ss_pred CCCCCHHHHHHHHHHhhhccc-cchhHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhhH
Q 013584 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAG 239 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~G-iLslP~a~~~~G~~g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~ 239 (440)
.|+.+++-..+.+..+.++++ +++.|......|+.++...+..++...+.+..+..-. ++.+..|.+|+.+.-||++.
T Consensus 37 gR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~-~r~~~~T~~e~l~~Ryg~~~ 115 (523)
T PRK10484 37 GRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAWEVTAAIALIILALIFLPRY-LKSGITTIPDFLEERYDKTT 115 (523)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCccHHHHHHHhcCchh
Confidence 789999999999999999888 6788877666786432111111111112333333333 34577899999999999988
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHhhHhhhccccccCcCccccchhHHH-HHHHHHHHHhhhhcccchhHHHHHHHHHH
Q 013584 240 RIAVSVILYAELYAC-CIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLF-ALMTTLAVLPTCWLRDLTVLSYISAGGVI 317 (440)
Q Consensus 240 ~~l~~~~~~~~~~~~-~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~ii~~liv~pl~~~r~l~~l~~~s~~~~i 317 (440)
+.+......+..... +...+...+..+..++.... ..+......... .++..++++..+..-.++...+.-.++.+
T Consensus 116 ~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~--~~gi~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV~~TD~iQ~v 193 (523)
T PRK10484 116 RRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSE--LLGISYGAAIWLLVWLIGIIGAIYAVFGGLKAVAVSDTINGI 193 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh--hcCCcHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 877666554432222 22222222333333321100 000000000111 22233444566667788888888888876
Q ss_pred HHHHH
Q 013584 318 ASILV 322 (440)
Q Consensus 318 ~~i~~ 322 (440)
.+++.
T Consensus 194 im~i~ 198 (523)
T PRK10484 194 GLLIG 198 (523)
T ss_pred HHHHH
Confidence 55443
No 78
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.45 E-value=0.004 Score=64.33 Aligned_cols=241 Identities=12% Similarity=0.015 Sum_probs=123.3
Q ss_pred CCCCCHHHHHHHHHHhhhccccchhHHHHHhhC--HH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhh
Q 013584 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGG--WF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGT 237 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~GiLslP~a~~~~G--~~-g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~ 237 (440)
+|+.++++.+..-++..+....+.+.......| +- +++.+++..++......+...... +.| .++.-+.+..||.
T Consensus 6 ~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~-r~G-l~~~v~sR~~FG~ 83 (440)
T PF02133_consen 6 ERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGP-RTG-LPTMVLSRASFGY 83 (440)
T ss_dssp G--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHH-CC----HHHHTTTTS-T
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhccccc-ccC-CCchhcchhccCc
Confidence 566788999888888888888777665543434 33 555555555555444455555543 344 2677889999999
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccccc---CcC--ccccchh-HHHHHHHHHHHHhhhhcccchhHHHH
Q 013584 238 AGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHL---SFG--GFYLNSH-HLFALMTTLAVLPTCWLRDLTVLSYI 311 (440)
Q Consensus 238 ~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~---~~~--~~~~~~~-~~~~ii~~liv~pl~~~r~l~~l~~~ 311 (440)
++..+..+...+...+.......+.++.+..++..... ..+ ....... ....++..++..+.. ....+.+..+
T Consensus 84 ~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~g~~~l~~~ 162 (440)
T PF02133_consen 84 RGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFA-IYGMKALRRL 162 (440)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHHH-CTHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHH-hcCHHHHHhH
Confidence 99999999999988888888888999998887754321 000 0000000 111122222222222 2244444444
Q ss_pred HHHHHHHHHHHHHH-hhhhhcccccC--CCCCCCCCCCCchHHHHHHHHHHhh-cccchHHHHhhccCCCChhhHHHHHH
Q 013584 312 SAGGVIASILVVLC-LFWVGLVDQVN--IHSKGTPLNLATLPVAIGLYGYCYS-GHAVFPNIYTSMAQPNQFPKVLITCF 387 (440)
Q Consensus 312 s~~~~i~~i~~ii~-ii~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~faf~-g~~~i~~i~~emk~p~k~~~ai~~a~ 387 (440)
..+......+..+. .++.....+.+ ...+..+.....+..++...+-.+. ...+.+.+.+.+|++++-.+...+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~~~~ 242 (440)
T PF02133_consen 163 AVIAAPILLVVFIGMLIWALSKAGGGPLLSAPASPSPSGSFLAAIALVIGSWISWAPNASDYSRYAKSDTSAWWGFWLGF 242 (440)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHCT-HHHCCS--S----S-HHHHHHHHHCCCHHHHCCCHHHHTTC--HHHHHHHHHHHH
T ss_pred HhhhhHHHHhhhhheeEEEeecCCcchhhhCcccchhHHHHHHHHHHHHhhhhhhhhccccHHhhCCCCCCcEEEEeehh
Confidence 44333332222222 22222111111 1111111111134444443332222 23556789999998887777777777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013584 388 LICTAMYAGVAYMGYTM 404 (440)
Q Consensus 388 ~i~~~lY~~v~~~gy~~ 404 (440)
....+...++++++...
T Consensus 243 ~~~~~~~~~~g~lg~~~ 259 (440)
T PF02133_consen 243 PGGFIPFVLVGILGAAA 259 (440)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 77777777766665443
No 79
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=97.39 E-value=0.00037 Score=71.99 Aligned_cols=222 Identities=14% Similarity=0.151 Sum_probs=132.8
Q ss_pred CCHHHHHHH-HHHhhhccc-cchhHHHHHhhCHH-HHHHHHHHHHHHHHHHHHHHH----hhhcCCCCCCHHHHHHHHhh
Q 013584 164 SSYAQALLN-GMNVLCGVG-ILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRR----CLDSEPGLETYPDIGQAAFG 236 (440)
Q Consensus 164 ~s~~~~~~~-ii~~iIG~G-iLslP~a~~~~G~~-g~illi~~g~l~~~t~~lL~~----~~~~~~~~~sy~~i~~~~fG 236 (440)
-+|++.++. .+-.+.|+= .|=+++...++|.. |++++.++..++..|+.--.. |..+.++ .|.- ..+.+|
T Consensus 30 fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg--~yfl-is~slg 106 (643)
T KOG2083|consen 30 FGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGG--VYFL-ISRSLG 106 (643)
T ss_pred EeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCc--EEEE-EEeccc
Confidence 455555442 222233333 45678999999997 888877666666665543322 2222333 3433 445567
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHH
Q 013584 237 TAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGV 316 (440)
Q Consensus 237 ~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~ 316 (440)
+-.+.-+.+++.+.....+..|++.+++.+..++..... +..+. +..+.++.+..+ ++-...|...+.+
T Consensus 107 ~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s~----~~i~g------i~~vt~~ill~i-~~ag~~w~~k~q~ 175 (643)
T KOG2083|consen 107 PEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETESK----EMIDG------IGSVTVLILLAI-NVAGVEWEAKLQI 175 (643)
T ss_pred ccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccH----HHhcc------hhHHHHHHHHHh-hhccchhHHHHHH
Confidence 666677788888888888899999999999999866531 11111 222222222223 4555666666665
Q ss_pred HHHHHHHHHh--hhhhcccccC------------CCCCCCCCCC---CchHHHHHHHHHHhhcccchHHHHhhccCCCC-
Q 013584 317 IASILVVLCL--FWVGLVDQVN------------IHSKGTPLNL---ATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ- 378 (440)
Q Consensus 317 i~~i~~ii~i--i~~~~~~~~~------------~~~~~~~~~~---~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k- 378 (440)
+..+++++.+ ...|.....+ ....+..-++ ..++..++++.=+..|.-.=.++.+..|+|++
T Consensus 176 ~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~ 255 (643)
T KOG2083|consen 176 VLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKDPQKA 255 (643)
T ss_pred HHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCCchhh
Confidence 5444333332 2222211111 0011111111 25666777777777777777888999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 013584 379 FPKVLITCFLICTAMYAGVAY 399 (440)
Q Consensus 379 ~~~ai~~a~~i~~~lY~~v~~ 399 (440)
+|+....++...+.+|+.+..
T Consensus 256 IP~GaL~Ai~vst~~yl~~i~ 276 (643)
T KOG2083|consen 256 IPLGALLAIGVSTLLYLIFIA 276 (643)
T ss_pred cccchhhhhhhhhhhhhhhhh
Confidence 999999999999999966544
No 80
>PHA02764 hypothetical protein; Provisional
Probab=97.26 E-value=0.014 Score=56.34 Aligned_cols=90 Identities=14% Similarity=0.056 Sum_probs=58.4
Q ss_pred CCCCCHHHHHHHHH-HhhhccccchhHHHHHhh--CHH---HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q 013584 161 SRQSSYAQALLNGM-NVLCGVGILSTPYAAKEG--GWF---GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAA 234 (440)
Q Consensus 161 ~~~~s~~~~~~~ii-~~iIG~GiLslP~a~~~~--G~~---g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~ 234 (440)
-|+.+.+++++.-+ +...|.++ +.|+-+... |.. ++++..++++....|...++...++.+|...| .+++
T Consensus 11 VREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVY---ISRA 86 (399)
T PHA02764 11 IKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAY---IRTA 86 (399)
T ss_pred eeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEE---hHHh
Confidence 57789999998444 44444433 545533322 322 44444444455556666677777777777777 8999
Q ss_pred hhhhHhHHHHHHHHHHHHHH
Q 013584 235 FGTAGRIAVSVILYAELYAC 254 (440)
Q Consensus 235 fG~~~~~l~~~~~~~~~~~~ 254 (440)
||++++++..+.+++.....
T Consensus 87 FGP~~GFLvG~a~WLtl~~G 106 (399)
T PHA02764 87 FSSKFYTIFGISLWLTYVLS 106 (399)
T ss_pred hCccHHHHHHHHHHHHHHhh
Confidence 99999999998887665443
No 81
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=97.11 E-value=0.046 Score=56.61 Aligned_cols=102 Identities=13% Similarity=0.149 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHhhhccccchhHHHHHhhCHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhhHhHH
Q 013584 164 SSYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIA 242 (440)
Q Consensus 164 ~s~~~~~~~ii~~iIG~GiLslP~a~~~~G~~-g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~~~l 242 (440)
.+.+-.+-+=+-++-|+|-+.=|---.+.||+ |.+-+++.+++.--..-.+.-....+.+.+|.++++++..|+.++.+
T Consensus 52 tnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~~ 131 (575)
T COG1966 52 TNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKVF 131 (575)
T ss_pred CCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHHHH
Confidence 45556666777788999999999999999997 76665555544433333333333334444699999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 013584 243 VSVILYAELYACCIEYIILESDN 265 (440)
Q Consensus 243 ~~~~~~~~~~~~~v~y~i~~~~~ 265 (440)
..+..++.+....+++.......
T Consensus 132 ~~~~~l~iliiv~Avfa~vv~~~ 154 (575)
T COG1966 132 FLLLALILLILVGAVFAAVIAKL 154 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776665555555444444443
No 82
>PRK15015 carbon starvation protein A; Provisional
Probab=97.06 E-value=0.036 Score=58.65 Aligned_cols=100 Identities=14% Similarity=0.175 Sum_probs=68.9
Q ss_pred HHHHHHHHHhhhccccchhHHHHHhhCHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhhHhHHHHH
Q 013584 167 AQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIAVSV 245 (440)
Q Consensus 167 ~~~~~~ii~~iIG~GiLslP~a~~~~G~~-g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~~~l~~~ 245 (440)
+-.+-+=+.++-|+|-+.=|..-.+.||+ +++-+++.+++.--..-...-....+.+.++.++++++..|++++.+..+
T Consensus 86 ~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~GrSig~ia~~~iG~~~~~lfli 165 (701)
T PRK15015 86 KVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVIALV 165 (701)
T ss_pred cchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecCCCccHHHHHHHHhhHHHHHHHHH
Confidence 34455677889999999999887799998 77666554444433332222222233344699999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHhhH
Q 013584 246 ILYAELYACCIEYIILESDNL 266 (440)
Q Consensus 246 ~~~~~~~~~~v~y~i~~~~~l 266 (440)
..++.+.....++..+..+.+
T Consensus 166 ~i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 166 ACFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777776666666655555554
No 83
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.05 E-value=0.0029 Score=66.44 Aligned_cols=55 Identities=15% Similarity=0.240 Sum_probs=44.8
Q ss_pred CchHHHHHHHHHHhhcccchHHHHhhccCCCC-hhhHHHHHHHHHHHHHHHHHHHH
Q 013584 347 ATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLITCFLICTAMYAGVAYMG 401 (440)
Q Consensus 347 ~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k-~~~ai~~a~~i~~~lY~~v~~~g 401 (440)
.++...++++.=+-.|...=.++-.|+|+|+| +||..+.++...+++|+++.++.
T Consensus 294 ~~F~~~FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm 349 (945)
T KOG1288|consen 294 EDFASTFGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLM 349 (945)
T ss_pred eehhhhheeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHh
Confidence 34566677666666666666778899999999 99999999999999999988754
No 84
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=97.05 E-value=0.12 Score=52.52 Aligned_cols=234 Identities=12% Similarity=0.071 Sum_probs=118.3
Q ss_pred CCCCHHHHHHHHHHhhhccc-cchhHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhh----cCCCCCCHHHHHHHHhh
Q 013584 162 RQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLD----SEPGLETYPDIGQAAFG 236 (440)
Q Consensus 162 ~~~s~~~~~~~ii~~iIG~G-iLslP~a~~~~G~~g~illi~~g~l~~~t~~lL~~~~~----~~~~~~sy~~i~~~~fG 236 (440)
.-.|...-++..+++-||-| |--.|+...+-|=...++.-++..+..=--.++.|..- +.....+|..+.. +
T Consensus 7 ~w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~---~ 83 (439)
T COG0733 7 QWSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAP---K 83 (439)
T ss_pred chhhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHHHHHHHHhhhhcCCChhHHHHHhcc---C
Confidence 44678888999999999999 88899976655422222222222222222233344322 2222345544443 2
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcC--cc--------ccchhH--HHHHHHHHHHHhhhhccc
Q 013584 237 TAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFG--GF--------YLNSHH--LFALMTTLAVLPTCWLRD 304 (440)
Q Consensus 237 ~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~--~~--------~~~~~~--~~~ii~~liv~pl~~~r~ 304 (440)
|+++ .+.+.-.+..+..+.-|.++.|=.+.+++.......+ .- ...+.. ....++..++.-+...|.
T Consensus 84 ~~~~-~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~G 162 (439)
T COG0733 84 KKWE-WIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRG 162 (439)
T ss_pred ccch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHh
Confidence 3333 2334334444455555555555555544433221110 00 000011 111111112222222344
Q ss_pred ch-hHHHHHHHHHHHHHHHHHHhhhhhcccc-----cC--CCCCCC-CCCCCchHHHHHHHHHHhh-cccchHHHHhhcc
Q 013584 305 LT-VLSYISAGGVIASILVVLCLFWVGLVDQ-----VN--IHSKGT-PLNLATLPVAIGLYGYCYS-GHAVFPNIYTSMA 374 (440)
Q Consensus 305 l~-~l~~~s~~~~i~~i~~ii~ii~~~~~~~-----~~--~~~~~~-~~~~~~~~~a~~~~~faf~-g~~~i~~i~~emk 374 (440)
++ .+.+.+.+-....+++++.+++..+..+ .+ +.+... ..++.-+..|+|...|+-+ |...+.+..+.++
T Consensus 163 V~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~ 242 (439)
T COG0733 163 VKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYLS 242 (439)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 43 3667776666666655555555443321 11 122222 3347788999999999997 7788888888888
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHH
Q 013584 375 QPNQFPKVLITCFLICTAMYAGVAY 399 (440)
Q Consensus 375 ~p~k~~~ai~~a~~i~~~lY~~v~~ 399 (440)
|++++++........-+.+=++.|+
T Consensus 243 k~~~l~~sa~~v~~~n~~~s~lAGl 267 (439)
T COG0733 243 KKSDLVSSALSIVLLNTLISLLAGL 267 (439)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHH
Confidence 8888665544444444444444443
No 85
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=96.63 E-value=0.25 Score=50.42 Aligned_cols=86 Identities=17% Similarity=0.110 Sum_probs=56.2
Q ss_pred CCCCCHHHHHHHHHHhhhccc-cchhHHHHHhhCHHHHHHHHHHHHH---HHHHHHHHHHhhhcCCCCCC----HHHHHH
Q 013584 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWFGLLILVAFGVL---SFYTGILLRRCLDSEPGLET----YPDIGQ 232 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~G-iLslP~a~~~~G~~g~illi~~g~l---~~~t~~lL~~~~~~~~~~~s----y~~i~~ 232 (440)
++++|.+|+++..+...+|+| |.....|+..+|+-.+..+.+.+++ +-|+=..|+.-.+++.+... =..+.+
T Consensus 16 ~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi~ 95 (416)
T PF01235_consen 16 EGGISPFQALCTALAGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYIE 95 (416)
T ss_pred CCCcChHHHHHHHHHhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHHH
Confidence 567999999999999999999 7888999999998555555544444 44555566665543332222 224466
Q ss_pred HHhhhh-HhHHHHHH
Q 013584 233 AAFGTA-GRIAVSVI 246 (440)
Q Consensus 233 ~~fG~~-~~~l~~~~ 246 (440)
+.+|.+ .+.+..++
T Consensus 96 ~gl~~k~la~~fai~ 110 (416)
T PF01235_consen 96 KGLGSKWLAILFAIF 110 (416)
T ss_pred HHhccchHHHHHHHH
Confidence 666644 34444444
No 86
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=96.41 E-value=0.22 Score=50.91 Aligned_cols=180 Identities=15% Similarity=0.121 Sum_probs=107.4
Q ss_pred HHHHhhhcCCCCCCHHHHH-HHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHH
Q 013584 213 LLRRCLDSEPGLETYPDIG-QAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALM 291 (440)
Q Consensus 213 lL~~~~~~~~~~~sy~~i~-~~~fG~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii 291 (440)
++.+-+ |+-+..|++|+. .|..-++.|.+..+.-.+.-+...++.++-.+..+..++.-.. ..-.++
T Consensus 93 L~A~~L-Rk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv~~-----------~vgv~i 160 (529)
T COG4147 93 LIAEYL-RKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGVPY-----------HVGVVI 160 (529)
T ss_pred HHHHHH-HhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCc-----------eeehhh
Confidence 345555 677778999985 5555677888877777777777777888888888888875211 233345
Q ss_pred HHHHHHhhhhcccchhHHHHHHHHHHHHHHHHHHh---hhhhccccc--------CCCCC--C-----CCCCCCchHHHH
Q 013584 292 TTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCL---FWVGLVDQV--------NIHSK--G-----TPLNLATLPVAI 353 (440)
Q Consensus 292 ~~liv~pl~~~r~l~~l~~~s~~~~i~~i~~ii~i---i~~~~~~~~--------~~~~~--~-----~~~~~~~~~~a~ 353 (440)
..++++..+.+..++...|...+.-+..+...++. +..-+..++ ..++. + +-...++....+
T Consensus 161 g~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~i 240 (529)
T COG4147 161 GGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFI 240 (529)
T ss_pred HhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHH
Confidence 55556666667788888888877654433222211 111111110 01110 0 011113344444
Q ss_pred HHHHHHhhcccchHHHHhhc---cCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013584 354 GLYGYCYSGHAVFPNIYTSM---AQPNQFPKVLITCFLICTAMYAGVAYMGYTM 404 (440)
Q Consensus 354 ~~~~faf~g~~~i~~i~~em---k~p~k~~~ai~~a~~i~~~lY~~v~~~gy~~ 404 (440)
+...---.|...+|.+.-.. .+-+.-++.+.++..++.++|+..-+.|+.+
T Consensus 241 sl~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A 294 (529)
T COG4147 241 SLGFALMVGTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYILTPIIGAGA 294 (529)
T ss_pred HHHHHHHHccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433344666677765332 2233478999999999999999988877654
No 87
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=96.05 E-value=0.53 Score=49.87 Aligned_cols=224 Identities=14% Similarity=0.178 Sum_probs=103.3
Q ss_pred CCHHHHHHHHHHhhhccc-cchhHHH-HHhhCHHHHH----HHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhh
Q 013584 164 SSYAQALLNGMNVLCGVG-ILSTPYA-AKEGGWFGLL----ILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGT 237 (440)
Q Consensus 164 ~s~~~~~~~ii~~iIG~G-iLslP~a-~~~~G~~g~i----lli~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~ 237 (440)
.+..+-++..++..+|.| +.-.|+- .+++|..-++ .++++|+=..+.=..+++.. +.+....|..++...-|
T Consensus 5 ~~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~-~~~~~~~~~~~~p~~~g- 82 (523)
T PF00209_consen 5 SSKIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYS-RSGPIGAWKRLCPIFKG- 82 (523)
T ss_dssp S-HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHH-HTTSHHHS-HHHHHHHT-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccc-
Confidence 467888999999999999 8889986 5566643222 22344444445556667766 34443345444433211
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccccc------CcCcc-------------------------------
Q 013584 238 AGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHL------SFGGF------------------------------- 280 (440)
Q Consensus 238 ~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~------~~~~~------------------------------- 280 (440)
+.+...+..+..++-|.+..+..+.+++..... +...|
T Consensus 83 -----iG~~~~~~~~~~~~yy~vi~~w~l~Y~~~s~~~~lpw~~C~~~~n~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (523)
T PF00209_consen 83 -----IGYAMVLISFLIAIYYSVIVAWALYYFFQSFTGPLPWSSCNNSWNTPNCYDIYSNCNCSNSSSYNFTQRISPAEE 157 (523)
T ss_dssp -----HHHH---HHHHHHHHHHHHHHHHHHHHHH----------------------------------------------
T ss_pred -----ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 222233333334444444444444333221100 00000
Q ss_pred ccch-------------h----HHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhhhhcccc-----cC--
Q 013584 281 YLNS-------------H----HLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCLFWVGLVDQ-----VN-- 336 (440)
Q Consensus 281 ~~~~-------------~----~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i~~i~~ii~ii~~~~~~~-----~~-- 336 (440)
.+.+ . ....++++.++.-++..|.++..+.+.......-+++++++++.+..-+ ..
T Consensus 158 ff~~~vl~~s~~i~~~g~~~~~l~~~l~~~w~iv~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~ 237 (523)
T PF00209_consen 158 FFYREVLQISDGISDFGSLSWQLLLCLFIVWLIVFFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFL 237 (523)
T ss_dssp -----------------------HHHHHHHHHHHTTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHH
T ss_pred cccccccccccccccccchhHHHHHHHHHHHHHHHHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEE
Confidence 0000 0 0111122222333444566666665555443322233333333332111 01
Q ss_pred CCCCCC-CCCCCchHHHHHHHHHHhh-cccchHHHHhhccCCCChhhHHHHHHHHHHHHH
Q 013584 337 IHSKGT-PLNLATLPVAIGLYGYCYS-GHAVFPNIYTSMAQPNQFPKVLITCFLICTAMY 394 (440)
Q Consensus 337 ~~~~~~-~~~~~~~~~a~~~~~faf~-g~~~i~~i~~emk~p~k~~~ai~~a~~i~~~lY 394 (440)
+.+... ..+..-+..|++..+|+.+ |...+..+.+-+|+.++..|...+....-++.-
T Consensus 238 ~~pd~~~l~~~~vW~~A~~Q~ffsl~ig~G~~it~~Sy~~~~~n~~~~a~~v~~~~~~~s 297 (523)
T PF00209_consen 238 FTPDWSKLLDPKVWIAALGQVFFSLSIGFGIMITYGSYNKFKNNIFRDALIVAFINTLVS 297 (523)
T ss_dssp HSB-TTGTTSHHHHHHHHHHHHHHTTTTSSHHHHHHTTS-TTS-SHHHHHHHHHHHHHHH
T ss_pred ecCCcchhhHHHHHHHHHHHHhhccCCCcceEEEEcCcCCCCccccccceEEEcCchhhh
Confidence 111111 2233446789999999998 788888888888888886664444434433333
No 88
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=96.03 E-value=0.11 Score=53.19 Aligned_cols=76 Identities=24% Similarity=0.389 Sum_probs=58.2
Q ss_pred CHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccc
Q 013584 226 TYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDL 305 (440)
Q Consensus 226 sy~~i~~~~fG~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l 305 (440)
=...++++.||+.|..+..++..+.|+.+++.-+..++++++.+++... ...++++.+++.+.++.+ .+
T Consensus 262 lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~kis----------Y~~~v~i~~i~S~~ian~-Gl 330 (427)
T PF05525_consen 262 LLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPKIS----------YKVWVIIFTIFSFIIANL-GL 330 (427)
T ss_pred HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----------hHHHHHHHHHHHHHHHHh-CH
Confidence 4556689999999999999999999999999999999999999997432 246666666666665544 44
Q ss_pred hhHHHHH
Q 013584 306 TVLSYIS 312 (440)
Q Consensus 306 ~~l~~~s 312 (440)
+.+-.++
T Consensus 331 ~~Ii~~s 337 (427)
T PF05525_consen 331 DQIIKIS 337 (427)
T ss_pred HHHHHHH
Confidence 4444433
No 89
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=95.93 E-value=0.22 Score=50.39 Aligned_cols=50 Identities=18% Similarity=0.326 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccc
Q 013584 223 GLETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPN 272 (440)
Q Consensus 223 ~~~sy~~i~~~~fG~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~ 272 (440)
+..-..+++++.||+.+..++.+...+.|+.+++..+..+++++..+++.
T Consensus 253 ~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k 302 (378)
T TIGR00796 253 GAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK 302 (378)
T ss_pred cHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44567788999999999999999999999999999999999999999764
No 90
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=95.32 E-value=3.6 Score=42.10 Aligned_cols=234 Identities=15% Similarity=0.075 Sum_probs=118.5
Q ss_pred CCCCCHHHHHHHHHHhhhccc-cchhHHHHHhhCHHHHHHHH---HHHHHHHHHHHHHHHhhhcCCCCCCHH----HHHH
Q 013584 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWFGLLILV---AFGVLSFYTGILLRRCLDSEPGLETYP----DIGQ 232 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~G-iLslP~a~~~~G~~g~illi---~~g~l~~~t~~lL~~~~~~~~~~~sy~----~i~~ 232 (440)
++..|.+|+++..+..-+|+| |-...-|+.-+|+-.+.-+. ++|..+-|.=..|+...+++.+...|. .+.+
T Consensus 60 ~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yYi~ 139 (452)
T COG1115 60 KGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYYIE 139 (452)
T ss_pred CCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHHHH
Confidence 677999999999999999999 77788899999974444444 455555566666766664333222221 2234
Q ss_pred HHhh-hhHhHHHHHHHHHHHH-HHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHH
Q 013584 233 AAFG-TAGRIAVSVILYAELY-ACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSY 310 (440)
Q Consensus 233 ~~fG-~~~~~l~~~~~~~~~~-~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~ 310 (440)
+-+| |+...+..+.+.+.+. .......-..++.+..-+... ....-+...++.-+..+..++.+..
T Consensus 140 kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~~~------------~~~~gi~la~l~~~VI~GGi~rIa~ 207 (452)
T COG1115 140 KGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFGIP------------PLVTGIVLALLVALVIFGGIKRIAK 207 (452)
T ss_pred hhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcCCc------------HHHHHHHHHHHHHHHHHcchHHHHH
Confidence 4444 4444454433332222 133333334444444443211 2333333344444455668888888
Q ss_pred HHHHHHHHHH--HHHHHhhhhhcc--ccc---------CCCCCCCCCCCC------chHHHHHHHHHHhh-cccchHHHH
Q 013584 311 ISAGGVIASI--LVVLCLFWVGLV--DQV---------NIHSKGTPLNLA------TLPVAIGLYGYCYS-GHAVFPNIY 370 (440)
Q Consensus 311 ~s~~~~i~~i--~~ii~ii~~~~~--~~~---------~~~~~~~~~~~~------~~~~a~~~~~faf~-g~~~i~~i~ 370 (440)
++..-+.++. +++.++++.... +-+ .+.+....-+.. .+...+.-.+||=. |....|...
T Consensus 208 v~~~vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEAGmGsap~aa 287 (452)
T COG1115 208 VSSKVVPFMAILYVLVALVIIVLNISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEAGMGSAPIAA 287 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhcccccCCcchhHH
Confidence 8776654333 333333322211 100 111111111222 22233344566654 677788876
Q ss_pred hh--ccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013584 371 TS--MAQPNQFPKVLITCFLICTAMYAGVAYMGYTMFG 406 (440)
Q Consensus 371 ~e--mk~p~k~~~ai~~a~~i~~~lY~~v~~~gy~~fG 406 (440)
.. .+||.|=--+-..+..+-+++-+-...+..+.-|
T Consensus 288 AaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg 325 (452)
T COG1115 288 AAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSG 325 (452)
T ss_pred HhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcC
Confidence 65 4577653333333333433333333333344444
No 91
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=95.16 E-value=0.45 Score=47.97 Aligned_cols=79 Identities=22% Similarity=0.325 Sum_probs=59.7
Q ss_pred CCCCHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhc
Q 013584 223 GLETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWL 302 (440)
Q Consensus 223 ~~~sy~~i~~~~fG~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~ 302 (440)
|.+=...+.+..||+.+..+..++..+.|..+++.-+..++|+++..+|... ...|+++..++.+.+...
T Consensus 261 G~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~~S----------Y~~~v~if~i~sflvan~ 330 (431)
T COG1114 261 GGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPKLS----------YKTWVIIFTLISFLVANL 330 (431)
T ss_pred hHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----------HHHHHHHHHHHHHHHHHh
Confidence 4445667789999999999999999999999999999999999999998543 245666666555555544
Q ss_pred ccchhHHHHH
Q 013584 303 RDLTVLSYIS 312 (440)
Q Consensus 303 r~l~~l~~~s 312 (440)
.+..+-.++
T Consensus 331 -GL~~Ii~is 339 (431)
T COG1114 331 -GLEQIIKIS 339 (431)
T ss_pred -hHHHHHHHH
Confidence 444444443
No 92
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=94.94 E-value=4.6 Score=40.49 Aligned_cols=80 Identities=15% Similarity=0.123 Sum_probs=54.4
Q ss_pred CCHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhh--c
Q 013584 225 ETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCW--L 302 (440)
Q Consensus 225 ~sy~~i~~~~fG~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~--~ 302 (440)
++..+..++-+|++..++..+...+......+..+...+.-+..++ ..+ ...+.++.+++.+.+.+ .
T Consensus 42 ~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~-g~~----------~~~~~~~~~~~~~~ll~~~~ 110 (358)
T PF01566_consen 42 KGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLF-GIP----------LWIWVLLVAVIAILLLWLSS 110 (358)
T ss_pred CChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCC----------cHHHHHHHHHHHHHHHHHHh
Confidence 5888999999999999988888888888777777777777777665 322 13444555544444444 5
Q ss_pred ccchhHHHHHHHH
Q 013584 303 RDLTVLSYISAGG 315 (440)
Q Consensus 303 r~l~~l~~~s~~~ 315 (440)
++.+.+..+..+-
T Consensus 111 ~~y~~~E~~~~~l 123 (358)
T PF01566_consen 111 GGYRRLERILKVL 123 (358)
T ss_pred ccchHHHHHHHHH
Confidence 5666666555433
No 93
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=94.27 E-value=0.58 Score=48.05 Aligned_cols=71 Identities=13% Similarity=0.182 Sum_probs=55.2
Q ss_pred HHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccch
Q 013584 227 YPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLT 306 (440)
Q Consensus 227 y~~i~~~~fG~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~ 306 (440)
...+....+|+++..+..+.+++.|+.++++.+..++++++..++ . + ...+.++.+++.++++.+ .++
T Consensus 267 l~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-i--s--------Y~~~v~i~~l~S~~lSn~-G~~ 334 (439)
T PRK15433 267 LHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-L--S--------YRTLVFILGGFSMVVSNL-GLS 334 (439)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C--c--------HHHHHHHHHHHHHHHHHh-HHH
Confidence 334578899999999999999999999999999999999999875 2 1 246667777777776655 444
Q ss_pred hHH
Q 013584 307 VLS 309 (440)
Q Consensus 307 ~l~ 309 (440)
.+-
T Consensus 335 ~II 337 (439)
T PRK15433 335 QLI 337 (439)
T ss_pred HHH
Confidence 333
No 94
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=93.62 E-value=8 Score=39.97 Aligned_cols=239 Identities=17% Similarity=0.185 Sum_probs=119.9
Q ss_pred CCCCCHHHHHHHHHHhhhccccchhHHHHHhhCH--H-HHHHHHHHHHHHHHHHHHHHHhhhcCCC---CCCHHHHHHHH
Q 013584 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGW--F-GLLILVAFGVLSFYTGILLRRCLDSEPG---LETYPDIGQAA 234 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~GiLslP~a~~~~G~--~-g~illi~~g~l~~~t~~lL~~~~~~~~~---~~sy~~i~~~~ 234 (440)
+|+=|+++-+..=....++++-.-+..+.-+.|. - +++.+++.-.+ ++..+ .+..++| ..+++-..+..
T Consensus 53 ~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~---~~~f~--~lns~~G~~yhIsFpv~sR~s 127 (572)
T KOG2466|consen 53 RRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLF---TAIFL--VLNSRPGSDYHISFPVLSRSS 127 (572)
T ss_pred cccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHH---HHHHH--HHccCCCcccccceeeeeeee
Confidence 6788999999998888888887777777667773 2 44433222111 11111 2223444 22555555666
Q ss_pred hhhhH---hHHHHHHHHHHHHHHHHHHHHHHHhh----Hhhhccc---cccCcCccccch-hHHHHHHHHHHHHhhhhcc
Q 013584 235 FGTAG---RIAVSVILYAELYACCIEYIILESDN----LSSLFPN---AHLSFGGFYLNS-HHLFALMTTLAVLPTCWLR 303 (440)
Q Consensus 235 fG~~~---~~l~~~~~~~~~~~~~v~y~i~~~~~----l~~~~~~---~~~~~~~~~~~~-~~~~~ii~~liv~pl~~~r 303 (440)
||-++ ..+..+.+.+..+|..+ -+.++. +..+++. .+...+...... .....++.-++.+|..++
T Consensus 128 FGiygS~~pIi~R~vma~vwYg~~a---wiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~~~~- 203 (572)
T KOG2466|consen 128 FGIYGSLWPIINRVVMACVWYGVNA---WIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPFYWF- 203 (572)
T ss_pred hhhhHhHHHHHHHHHHHHhhhhhhh---hhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhheeec-
Confidence 66544 34445555444444332 112222 2233322 111111111221 133344555566676666
Q ss_pred cchhHHHHHHHHHHHHHHHHHH-hhhhhcc-cccC--CCCCCCCCCCCchHHHHHHHHHHhhcc----cchHHHHhhccC
Q 013584 304 DLTVLSYISAGGVIASILVVLC-LFWVGLV-DQVN--IHSKGTPLNLATLPVAIGLYGYCYSGH----AVFPNIYTSMAQ 375 (440)
Q Consensus 304 ~l~~l~~~s~~~~i~~i~~ii~-ii~~~~~-~~~~--~~~~~~~~~~~~~~~a~~~~~faf~g~----~~i~~i~~emk~ 375 (440)
....++++-....+.+....+. ++|.... ++.+ ++.+.+..+......-+..+++++.+. -+.|...+--|+
T Consensus 204 ~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~N~pDFsRF~ks 283 (572)
T KOG2466|consen 204 PPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIVNAPDFSRFAKS 283 (572)
T ss_pred cHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhccchhhccCchhHhhcCC
Confidence 3444444433333333333222 3332211 1111 222334444444444455566666554 577888888999
Q ss_pred CCChhhHHH----HHHHHHHHHHHHHHHHHHHHhcCC
Q 013584 376 PNQFPKVLI----TCFLICTAMYAGVAYMGYTMFGES 408 (440)
Q Consensus 376 p~k~~~ai~----~a~~i~~~lY~~v~~~gy~~fG~~ 408 (440)
|......-. +.+.+.+++=++++..++..||.+
T Consensus 284 p~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~ 320 (572)
T KOG2466|consen 284 PNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTN 320 (572)
T ss_pred CCccchhhhhhhhhhhhhhhheeeEehhhhhhhhccc
Confidence 977444434 444444455555566889999976
No 95
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=93.39 E-value=2.2 Score=44.63 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccc
Q 013584 224 LETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAH 274 (440)
Q Consensus 224 ~~sy~~i~~~~fG~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~ 274 (440)
..-..++.....|+++...+..+..+..+.++++.++..+..+..+-.+-.
T Consensus 324 g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~ 374 (550)
T KOG1289|consen 324 GQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARDGG 374 (550)
T ss_pred CChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCC
Confidence 357888899999999998888888888888999888888888877765443
No 96
>PRK00701 manganese transport protein MntH; Reviewed
Probab=91.25 E-value=20 Score=37.08 Aligned_cols=92 Identities=16% Similarity=0.099 Sum_probs=54.8
Q ss_pred hhccccchh-----HHH---HHhhCHH-HHHHHH--HHHHHHHHHH-HHHHHhhhcCCCCCCHHHHHHHHhhhhHhHHHH
Q 013584 177 LCGVGILST-----PYA---AKEGGWF-GLLILV--AFGVLSFYTG-ILLRRCLDSEPGLETYPDIGQAAFGTAGRIAVS 244 (440)
Q Consensus 177 iIG~GiLsl-----P~a---~~~~G~~-g~illi--~~g~l~~~t~-~lL~~~~~~~~~~~sy~~i~~~~fG~~~~~l~~ 244 (440)
.+|.|++.. |.. ..++|-- |.-++. +.+.+..+.. .+.+|.. ...+ ++..+++++-||++..++..
T Consensus 36 ~lGPG~l~a~a~idpG~i~t~~~aGA~~Gy~LLW~llls~~~~~~~Q~~~~Rlg-ivTG-~~l~~~ir~~~~~~~~~~~~ 113 (439)
T PRK00701 36 FLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLLQSLSAKLG-IATG-RDLAQACRDRYPRPVVWFLW 113 (439)
T ss_pred HcCcHHHhhhheecchHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhHhh-hhcC-CCHHHHHHHHCCchHHHHHH
Confidence 677776544 432 3456653 554443 3333322222 2223332 2333 48999999999999888877
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhc
Q 013584 245 VILYAELYACCIEYIILESDNLSSLF 270 (440)
Q Consensus 245 ~~~~~~~~~~~v~y~i~~~~~l~~~~ 270 (440)
+...+...++.+..++..+--++.++
T Consensus 114 ~~~~l~~~~~~~~e~~G~a~al~ll~ 139 (439)
T PRK00701 114 IQAELAIMATDLAEVIGAAIALKLLF 139 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777777777776666665554
No 97
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=91.13 E-value=23 Score=37.59 Aligned_cols=84 Identities=23% Similarity=0.342 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHhhhccc-cchhHHH-HHhhCH---H-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhh
Q 013584 164 SSYAQALLNGMNVLCGVG-ILSTPYA-AKEGGW---F-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGT 237 (440)
Q Consensus 164 ~s~~~~~~~ii~~iIG~G-iLslP~a-~~~~G~---~-g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~ 237 (440)
.+.++..+..++..++.| +--.||- ++++|+ + =.+.+++.|+=.+|-=..|++-+ |.+...-+.-|+-+.-|
T Consensus 82 ~~K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~-r~g~~gvw~ri~P~l~G- 159 (629)
T KOG3659|consen 82 GSKTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYH-RQGCIGVWRRIAPALKG- 159 (629)
T ss_pred hhHHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHh-cccchhHHHHhCHHhcC-
Confidence 567888889999999998 6678986 777775 2 44555666666677777788776 56655556566655544
Q ss_pred hHhHHHHHHHHH
Q 013584 238 AGRIAVSVILYA 249 (440)
Q Consensus 238 ~~~~l~~~~~~~ 249 (440)
.+.-++.+++++
T Consensus 160 igy~i~~i~~~~ 171 (629)
T KOG3659|consen 160 IGYAICLIAFFV 171 (629)
T ss_pred CchhhhHHHHHH
Confidence 333334444443
No 98
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=90.97 E-value=0.24 Score=52.31 Aligned_cols=229 Identities=11% Similarity=0.050 Sum_probs=121.4
Q ss_pred CCCCCHHHHHHHHHHhhhccc-cchhHHHHHhhCHH-HHHHHHHHHHHHHHHHHHHHHhhh---cCCCCCCHHHHHHHHh
Q 013584 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLD---SEPGLETYPDIGQAAF 235 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~G-iLslP~a~~~~G~~-g~illi~~g~l~~~t~~lL~~~~~---~~~~~~sy~~i~~~~f 235 (440)
.|+..++-.-+.++.+.+|++ ++++|.....-|.. ....+ .......+++.... ..-+..+..|+.++-|
T Consensus 44 gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~~-----~~l~~~~~~~~~f~Pvf~~~~v~~~~eYl~~Rf 118 (585)
T KOG2349|consen 44 GRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFEW-----NALLSVLLLGWIFIPVFYRLGVTTMYEYLEKRF 118 (585)
T ss_pred CCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHHH-----HHHHHHHhhheEEEEEEEecCeeehhHHHHHHh
Confidence 577888888888888888887 78999876666642 11111 11111112221110 2345567777788888
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHH
Q 013584 236 GTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGG 315 (440)
Q Consensus 236 G~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~ 315 (440)
|+..|.+..+.+.+..+.-..+++..-+-.+.+... +.. + ...++..+++...+....++.+-|.=.++
T Consensus 119 ~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg--------~~~--~-l~~~~~~~ic~~YT~~GGlkaVi~TDv~Q 187 (585)
T KOG2349|consen 119 GGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTG--------INL--Y-LIVVILGLICVFYTALGGLKAVIWTDVVQ 187 (585)
T ss_pred cccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhc--------cCc--e-eehHHHHHHHHHHHHhcCeeEEEEhhHHH
Confidence 888777766666554443333332222222333221 111 1 11222233333334445667777777777
Q ss_pred HHHHHHHHHHhhhhhcccccCC-----------------CCC--CC--CCCCCchHHHHHHHHHHhhcccchHHHHhhcc
Q 013584 316 VIASILVVLCLFWVGLVDQVNI-----------------HSK--GT--PLNLATLPVAIGLYGYCYSGHAVFPNIYTSMA 374 (440)
Q Consensus 316 ~i~~i~~ii~ii~~~~~~~~~~-----------------~~~--~~--~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk 374 (440)
.+.++..++.+++.+..+..+. +.. +. ..-|.-+.-....-..-|..+.+...=+-.+|
T Consensus 188 ~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~~VQR~lsl~ 267 (585)
T KOG2349|consen 188 TVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQLIVQRYLSLP 267 (585)
T ss_pred HHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHHHHhHHhccc
Confidence 7777766666666554321110 000 00 11122122222334445555666665566666
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 013584 375 QPNQFPKVLITCFLICTAMYAGVAYMGYTMF 405 (440)
Q Consensus 375 ~p~k~~~ai~~a~~i~~~lY~~v~~~gy~~f 405 (440)
+-++.++++.......+++..+..+.|...|
T Consensus 268 slk~ak~~~~~~~~~~~l~~~~~~~~G~i~~ 298 (585)
T KOG2349|consen 268 SLKHAKPSLLLFGYGVLLIMFIMVFVGMIIY 298 (585)
T ss_pred cHHHhhhhhhhhhhHHHHHHHhhcccceeEe
Confidence 6677888888777777777666666665554
No 99
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=90.83 E-value=21 Score=36.58 Aligned_cols=46 Identities=13% Similarity=-0.012 Sum_probs=40.9
Q ss_pred CCHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhc
Q 013584 225 ETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLF 270 (440)
Q Consensus 225 ~sy~~i~~~~fG~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~ 270 (440)
++.++.+++.|+++..++..+...+.-.++.++..+..+--++-++
T Consensus 77 ~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~ 122 (416)
T COG1914 77 KGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLF 122 (416)
T ss_pred CcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4799999999999999999999989999999999988888888776
No 100
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.97 E-value=0.22 Score=54.01 Aligned_cols=8 Identities=38% Similarity=0.862 Sum_probs=3.1
Q ss_pred CCchhhHh
Q 013584 14 SDEEEDEE 21 (440)
Q Consensus 14 ~~~~~~~~ 21 (440)
+||+|+||
T Consensus 1404 ~dd~Deee 1411 (1516)
T KOG1832|consen 1404 DDDSDEEE 1411 (1516)
T ss_pred ccccCccc
Confidence 34444333
No 101
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=88.39 E-value=30 Score=34.81 Aligned_cols=237 Identities=11% Similarity=0.067 Sum_probs=124.5
Q ss_pred CCCCCHHHHHHHHHHhhhccc-cchhHHHHHhhCHHHHHHHHHHHHHH-HHHHHHHHHhh---hcCCCCCCHHHHHHHH-
Q 013584 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWFGLLILVAFGVLS-FYTGILLRRCL---DSEPGLETYPDIGQAA- 234 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~G-iLslP~a~~~~G~~g~illi~~g~l~-~~t~~lL~~~~---~~~~~~~sy~~i~~~~- 234 (440)
.|+.+-+-..+....+-+|+. .++=|.+..+-|. |++++..+=+-. +++.-.+++-. .++.+.-+..|+.++-
T Consensus 38 nRsmgg~VlAmt~~aTYisaSSFigGpgaayk~Gl-gwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~D~l~~RY 116 (473)
T COG4145 38 NRSMGGIVLAMTFTATYISASSFIGGPGAAYKYGL-GWVLLAMIQVPTVWLALGVLGKKFAILAREYNALTINDLLFARY 116 (473)
T ss_pred cCcccceehhhHHHHHHHHHhhhcCCCcHHHHhch-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCeeHHHHHHHHh
Confidence 566676666677777777775 4556777555553 444443222222 22222333221 1456667899988754
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHH
Q 013584 235 FGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAG 314 (440)
Q Consensus 235 fG~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~ 314 (440)
=++.-.++.++.+.+...+..++..+..+..++....- + ...-.++.+..+..-+.+...+.....-.+
T Consensus 117 ~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gi---d--------Y~tgL~ifa~~V~iYt~fGGFRAvvltD~I 185 (473)
T COG4145 117 QSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGI---D--------YTTGLLIFAVSVAIYTAFGGFRAVVLTDTI 185 (473)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCC---C--------chhhHHHHHHHHHHHHhhcceeeeehHHHH
Confidence 46777788888888888888888888888888877632 1 112233444455555555566655544444
Q ss_pred HHHH----HHHHHHHhhhhh--ccc--------ccCCCCCCCCCCC--CchHHHHH-HHHHHhhcccchHHHHhhccCCC
Q 013584 315 GVIA----SILVVLCLFWVG--LVD--------QVNIHSKGTPLNL--ATLPVAIG-LYGYCYSGHAVFPNIYTSMAQPN 377 (440)
Q Consensus 315 ~~i~----~i~~ii~ii~~~--~~~--------~~~~~~~~~~~~~--~~~~~a~~-~~~faf~g~~~i~~i~~emk~p~ 377 (440)
+-+. +++.++.++..+ +.+ +++.-.+....+. ..+..++- .++++-.|.+-...=+-.-||.+
T Consensus 186 QG~vmligtv~Lf~~~i~~~GG~~~av~tl~~iDp~lv~P~~~~~~l~~~Fm~Sfwilv~~gvlglP~t~vr~ia~kDsk 265 (473)
T COG4145 186 QGLVMLIGTVVLFVGVIYAGGGLSNAVETLTTIDPGLVTPQGADDILDPPFMASFWILVCFGVLGLPHTAVRCIAFKDSK 265 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHhCCccccCCCCCcccccchHHHHHHHHHHHHHhcCcHHHHHHHhccchh
Confidence 3322 222333333322 110 1111111111111 11222222 24455455544333333445555
Q ss_pred ChhhHHHHHHHHHHHHHHHHH---HHHHHHhcCCc
Q 013584 378 QFPKVLITCFLICTAMYAGVA---YMGYTMFGEST 409 (440)
Q Consensus 378 k~~~ai~~a~~i~~~lY~~v~---~~gy~~fG~~~ 409 (440)
-+.+.+.++..++.++-+.+- .+|.+.+.+.+
T Consensus 266 aih~gmiigt~vi~il~~gmhl~G~~graViPdlt 300 (473)
T COG4145 266 AIHRGMIIGTIVIAILMLGMHLAGALGRAVIPDLT 300 (473)
T ss_pred HHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCC
Confidence 588888887777777666554 44555555543
No 102
>PRK09928 choline transport protein BetT; Provisional
Probab=88.28 E-value=43 Score=36.53 Aligned_cols=268 Identities=13% Similarity=0.094 Sum_probs=118.2
Q ss_pred CCHHHHHHHHHHhhhccccchh----HHH-HH-----hhCHH-----HHHHHHH---HHHHHHH--HHHHHHHhhhcCCC
Q 013584 164 SSYAQALLNGMNVLCGVGILST----PYA-AK-----EGGWF-----GLLILVA---FGVLSFY--TGILLRRCLDSEPG 223 (440)
Q Consensus 164 ~s~~~~~~~ii~~iIG~GiLsl----P~a-~~-----~~G~~-----g~illi~---~g~l~~~--t~~lL~~~~~~~~~ 223 (440)
-|.++=+.+++.+-+|+|++-- |.. +. +.|.. +...-++ .-..+.| .+..++...-++..
T Consensus 93 fS~~sW~aMLFaAGmGigLmfwgvaEP~~h~~~PP~g~~~s~eAa~~Am~~t~FHWG~~aWAiYalvglalAYf~yr~~~ 172 (679)
T PRK09928 93 FSLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMALGYFSYRYNL 172 (679)
T ss_pred CCcchHHHHHHHHhhhhhheeehHHhHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcCCC
Confidence 4555556688999999997632 322 21 12221 1111111 1111222 22334444434444
Q ss_pred CCCHHHHHHHHhhhh----HhHHHHHHHHHH-HHHHHHHHHH---HHHhhHhhhccccccCcCccccchhHHHHHHHHHH
Q 013584 224 LETYPDIGQAAFGTA----GRIAVSVILYAE-LYACCIEYII---LESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLA 295 (440)
Q Consensus 224 ~~sy~~i~~~~fG~~----~~~l~~~~~~~~-~~~~~v~y~i---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~li 295 (440)
..+....++-++|++ .+.+++++.++. .+|.+.+.-. .++.-+..++. .+.. . . .+...+++..+
T Consensus 173 pl~issal~pllG~ri~G~~G~~IDi~av~~tvfGiaTSLGlGv~qi~~GL~~lfG-i~~~---~--~-~q~~ii~vi~~ 245 (679)
T PRK09928 173 PLTIRSALYPIFGKRINGPIGHSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLFD-IPES---L--A-AQAALIALSVI 245 (679)
T ss_pred CCchhHhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCc---c--H-HHHHHHHHHHH
Confidence 457777777777743 345666655553 3333332222 23333444442 1111 0 0 12222222223
Q ss_pred HHhhhhcccc-hhHHHHHHHHHHHHHHHHHHhhhhh--------ccccc--------CCCCCCCCCCC-CchHHHHHHHH
Q 013584 296 VLPTCWLRDL-TVLSYISAGGVIASILVVLCLFWVG--------LVDQV--------NIHSKGTPLNL-ATLPVAIGLYG 357 (440)
Q Consensus 296 v~pl~~~r~l-~~l~~~s~~~~i~~i~~ii~ii~~~--------~~~~~--------~~~~~~~~~~~-~~~~~a~~~~~ 357 (440)
+..++....+ +.++++|.+-+...+.+++.+++.| +.+.. .......+.+. .+++..-.++.
T Consensus 246 i~~~S~~sGl~KGIk~LS~lN~~La~~LllfVli~GPT~fil~~~~~siG~yl~~f~~msf~t~~~~~~~~W~~~WTiFY 325 (679)
T PRK09928 246 IATISVTSGVNKGIRVLSELNVLLALGLILFVLFMGDTSFLLNALVLNVGDYVNRFMGMTLNSFAFDRPTEWMNNWTLFF 325 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeeccCHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccccHHHH
Confidence 3333333344 6677777766666555555554433 11110 00010001111 23445555555
Q ss_pred HHhh--cccchHHHHhhccCCCChh----hHHHHHHHHHHHHHHHHHHHHHHH--hcCCchh------------hhhcCC
Q 013584 358 YCYS--GHAVFPNIYTSMAQPNQFP----KVLITCFLICTAMYAGVAYMGYTM--FGESTLS------------QFTLNM 417 (440)
Q Consensus 358 faf~--g~~~i~~i~~emk~p~k~~----~ai~~a~~i~~~lY~~v~~~gy~~--fG~~~~~------------~il~nl 417 (440)
||+. .-+.+.-+.+.+.+-+.++ -++.+...++++.+.++|=.+... -|...-. .++..+
T Consensus 326 WAWWiaWaPFVGlFIARISRGRTIREfilgvllvPsl~~~~WfsIfGgsal~l~~~g~~~l~~~~~~~~~~alf~~l~~l 405 (679)
T PRK09928 326 WAWWVAWSPFVGLFLARISRGRTIRQFVLGTLIIPFTFTLLWLSIFGNSALYEIIHGNAAFAEEAMAHPERGFYSLLAQY 405 (679)
T ss_pred HHHHHHHHHHHHHHHhhhcCCccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCccHHHHhhcchhhHHHHHHHhC
Confidence 5553 1233334455555544333 444455555555665555433322 1321111 145566
Q ss_pred CCchHHHHHHHHHHHHHhhcc
Q 013584 418 PQDLVATKIAVWTTILRAVMS 438 (440)
Q Consensus 418 p~~~~~~~ia~~~~vi~~~t~ 438 (440)
|-..+...++.++.++...|.
T Consensus 406 P~~~i~~~l~~il~~iFfvTS 426 (679)
T PRK09928 406 PAFTFSASVATITGLLFYVTS 426 (679)
T ss_pred cHHHHHHHHHHHHHHHHHHhc
Confidence 655556666666666655553
No 103
>PLN00151 potassium transporter; Provisional
Probab=87.27 E-value=33 Score=38.04 Aligned_cols=301 Identities=14% Similarity=0.123 Sum_probs=0.0
Q ss_pred CCCCCCCcceeecCCchhhHhhhhccCCCCCcccCCCCCCCCCccccccCCCCCCCCCCCChhhHhhcccccCCCCCCcc
Q 013584 1 MKNSVSDHSFYIESDEEEDEEKVFDVNGGEEDQEENDGNDSDSSAENQQQTHPGSYNTSWPQSYRQSIDLYSSVPSPSLT 80 (440)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 80 (440)
++-...|..|...+|+|++++++ ..+|++++++..+-+|++..++.+++- +++-.++.+=...
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~d~~~~e 82 (852)
T PLN00151 20 VGTDSGESRWVDGSEDDSEDPAS--LDDDDDDRDSGGGMLEEEEDGNMRRRL---------------IRTPPRVDSFDVE 82 (852)
T ss_pred ccCCCCCcccccCccccccCCcc--cccccccccccCCccccccccchhhhH---------------hhCCCccchhhhc
Q ss_pred cCCCCccccccccccccccccCCCCcccccccCCCCCCcccCCccccccccCCCCCCCCCCCccccccccCCcCCCCCCC
Q 013584 81 FLGTPSLSRLSSSFLSSSLTRRHTPESLAATTKPLLPTVAYEQPQQQRRSSHTLLPPFPSRRSSLIKDSKSSRVSHEHPI 160 (440)
Q Consensus 81 ~~~~~~~~r~~~s~~~~~~~~~~~~~~~~~~~~pll~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (440)
-...+...|+-
T Consensus 83 ~~~~~~~~~~~--------------------------------------------------------------------- 93 (852)
T PLN00151 83 AMEIPGAHRHD--------------------------------------------------------------------- 93 (852)
T ss_pred ccccccccccc---------------------------------------------------------------------
Q ss_pred CCCCCHHHHHHHHHHhh------hccccc-hhHHHHHhhC------HHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCCC
Q 013584 161 SRQSSYAQALLNGMNVL------CGVGIL-STPYAAKEGG------WFGLLILVAFGVLSFYTGILLRRCLDSE-PGLET 226 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~i------IG~GiL-slP~a~~~~G------~~g~illi~~g~l~~~t~~lL~~~~~~~-~~~~s 226 (440)
.+..+.|....+.+.++ ||+..| +...+|...+ .+|++.+++..+.-..+...+.-.+... .|+..
T Consensus 94 ~~~~~~w~~l~La~qslGVVyGDIGTSPLYv~~s~F~~~~~~~~~dIlGvLSLIfWtLtLiv~iKYV~iVLrAdd~GEGG 173 (852)
T PLN00151 94 SEDLSVGRTLALAFQTLGVVFGDVGTSPLYTFSVMFSKVPIKSEEDVLGALSLVLYTLILIPLAKYVLVVLWANDDGEGG 173 (852)
T ss_pred cccccHHHHHHHHHhhhceEeCcCCCCHHHHHHHHhcCCCCCChhheeeehHHHHHHHHHHHHHhheeEEEEecCCCCch
Q ss_pred HHHHHHHHhhhhH---------------------------------------hHHHHHHHHHHHHHHHHHH---------
Q 013584 227 YPDIGQAAFGTAG---------------------------------------RIAVSVILYAELYACCIEY--------- 258 (440)
Q Consensus 227 y~~i~~~~fG~~~---------------------------------------~~l~~~~~~~~~~~~~v~y--------- 258 (440)
-..+...+.-..- +..-.+++.+.++|.|..+
T Consensus 174 tfALySLl~R~a~~~llpnq~~~de~ls~~~~~~~~~~~~~~~~~k~~lE~s~~~k~~ll~l~l~GtamviGDGvlTPAI 253 (852)
T PLN00151 174 TFALYSLICRHAKVSLLPNQLPSDERISSFRLKLPTPELERSLKIKERLETSSLLKKLLLLLVLAGTSMVIGDGVLTPAM 253 (852)
T ss_pred HHHHHHHHHHhcCcCccccccchHhhhhhhcccCCccccchhHHHHHHhhhhHHHHHHHHHHHHHhHHHHhcccccccch
Q ss_pred -HHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhhhhcccccCC
Q 013584 259 -IILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCLFWVGLVDQVNI 337 (440)
Q Consensus 259 -~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~i~~i~~ii~ii~~~~~~~~~~ 337 (440)
+.-.-+-+....|....+. .+.+.++.++++....-..-..++++-. ..+++-++++...|+.+-..+
T Consensus 254 SVLSAVeGL~v~~p~l~~~~--------VV~Is~~ILv~LF~~Q~~GT~kVg~~Fg---PImllWFl~i~~iGiynI~~~ 322 (852)
T PLN00151 254 SVMSAVSGLKVGVPGFGQDA--------VVMISVAFLVILFSVQRFGTSKVGFAFG---PALALWFCSLGGIGIYNLVKY 322 (852)
T ss_pred hhhhhhccccccCCcCCCCe--------ehhHHHHHHHHHHHHHhccchhhhhhhc---cHHHHHHHHHHHHHHHHHHhc
Q ss_pred ----------------------------------------------CCCCCCCCCCchHHHHHHHHHHhhcccchHHHHh
Q 013584 338 ----------------------------------------------HSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYT 371 (440)
Q Consensus 338 ----------------------------------------------~~~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~ 371 (440)
|....+....-....++..+.+|.||.....-..
T Consensus 323 ~p~Vl~AlnP~Y~~~Ff~~~~~~gw~~LGgVvLciTGaEALfADLGHFg~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~p 402 (852)
T PLN00151 323 DSSVFRAFNPVYIYYFFKRNSTKAWSALGGCVLCATGSEAMFADLGYFSVRSIQLAFTCLVLPCLLLAYMGQAAYLMKNP 402 (852)
T ss_pred CHHHHhhhCHHHHHHHHHhCCCceEEEecceeeeeccchhhhcccCCCCccceeeeehhhHHHHHHHHHcchHHHHhcCc
Q ss_pred hc-cCC--CChhhHHHHHHHHHHHHHHHHH
Q 013584 372 SM-AQP--NQFPKVLITCFLICTAMYAGVA 398 (440)
Q Consensus 372 em-k~p--~k~~~ai~~a~~i~~~lY~~v~ 398 (440)
+. .|| +-.|..+.+-+++...+=.++|
T Consensus 403 ~~~~npFy~svP~~~~wP~~vlAtlAaIIA 432 (852)
T PLN00151 403 DSAEQIFFSSVPSSLFWPVFLIANLAALIA 432 (852)
T ss_pred ccccCcHHHhCCchhHHHHHHHHHHHHHHH
No 104
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=87.07 E-value=43 Score=35.17 Aligned_cols=270 Identities=10% Similarity=0.084 Sum_probs=119.7
Q ss_pred CCCCCHHHHHHHHHHhhhccccchh----HHH-HHh------hCHH-----HHHHHH-----HHHHHHHHHHHHHHHhhh
Q 013584 161 SRQSSYAQALLNGMNVLCGVGILST----PYA-AKE------GGWF-----GLLILV-----AFGVLSFYTGILLRRCLD 219 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~GiLsl----P~a-~~~------~G~~-----g~illi-----~~g~l~~~t~~lL~~~~~ 219 (440)
+.+-|.++=+.+++.+-+|+|++-- |.. +.+ .+.. ++.... ....+-..++..++....
T Consensus 72 kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay~~y 151 (485)
T PF02028_consen 72 KPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAYFFY 151 (485)
T ss_dssp --SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHheeee
Confidence 4457888888899999999998733 321 221 1211 111111 111111222333344333
Q ss_pred cCCCCCCHHHHHHHHhhh----hHhHHHHHHHHHHHHHHHHHHHHHHHh----hHhhhccccccCcCccccchhHHHHHH
Q 013584 220 SEPGLETYPDIGQAAFGT----AGRIAVSVILYAELYACCIEYIILESD----NLSSLFPNAHLSFGGFYLNSHHLFALM 291 (440)
Q Consensus 220 ~~~~~~sy~~i~~~~fG~----~~~~l~~~~~~~~~~~~~v~y~i~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~ii 291 (440)
++....+..+.++-.+|+ +.+.+++++..+...+..+.-+-+... -+..++. .+.. .. .....++
T Consensus 152 ~k~~~~~~ss~l~pl~g~~~~g~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~G-i~~~-----~~-~~~~ii~ 224 (485)
T PF02028_consen 152 NKGKPLRISSALYPLLGDRINGPLGKIIDILAIFATIFGVATSLGLGVPQISAGLSSLFG-IPNT-----FG-LQIIIII 224 (485)
T ss_dssp TS---SSGGGGCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SSST-----HH-HHHHHHH
T ss_pred ecCCCCchhhhhhhhcCCcccCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcC-CCCc-----hH-HHHHHHH
Confidence 333334455555555553 234666666665544444333333333 3333332 1111 01 1222222
Q ss_pred HHHHHHhhhhcccc-hhHHHHHHHHHHHHHHHHHHhhhhhc--------ccc--------cCCCCCCCCCCCC-chHHHH
Q 013584 292 TTLAVLPTCWLRDL-TVLSYISAGGVIASILVVLCLFWVGL--------VDQ--------VNIHSKGTPLNLA-TLPVAI 353 (440)
Q Consensus 292 ~~liv~pl~~~r~l-~~l~~~s~~~~i~~i~~ii~ii~~~~--------~~~--------~~~~~~~~~~~~~-~~~~a~ 353 (440)
...+++-++....+ +.++++|.+-+...+.+++.+++.|= .+. +.......+.+-. +++..-
T Consensus 225 ~~~~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll~~vl~~Gpt~fil~~~~~s~G~yl~~f~~~s~~t~~~~~~~~w~~~W 304 (485)
T PF02028_consen 225 VITVIFTISAVSGLDKGIKRLSNINVYLAFALLLFVLLFGPTVFILNLFTESIGDYLQNFFRMSLWTDPFGNSGQWPQDW 304 (485)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHT--TTTTTTTHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccCCC
Confidence 33333334444455 56888888777766666655555441 000 0000111122222 256666
Q ss_pred HHHHHHhh--cccchHHHHhhccCCCChhhHHHHHH----HHHHHHHHHHHHHHHHHh--cCC-ch-----------hhh
Q 013584 354 GLYGYCYS--GHAVFPNIYTSMAQPNQFPKVLITCF----LICTAMYAGVAYMGYTMF--GES-TL-----------SQF 413 (440)
Q Consensus 354 ~~~~faf~--g~~~i~~i~~emk~p~k~~~ai~~a~----~i~~~lY~~v~~~gy~~f--G~~-~~-----------~~i 413 (440)
.++-+++. --+.+.-....+.+-+.++-.+...+ ..+.+.|.++|-.+.... |.. .. -.+
T Consensus 305 TvFYwaWWiawaPfvG~FiArISkGRTIRE~il~~~~~psl~~~~wf~ifGg~al~~~~~g~~~~~~~~~~g~~~a~~~~ 384 (485)
T PF02028_consen 305 TVFYWAWWIAWAPFVGLFIARISKGRTIREFILGVLLVPSLFCFLWFSIFGGYALYLQLSGAGDLAAANEQGPEAALFAF 384 (485)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHCTTTSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSS-HHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCcCHHHHHHHHHHhhHHHHHHHHHHHCchHHhhHhhhhhhHHHHhhcchhhHHHHH
Confidence 66555553 22444445667776665554444333 334444444443332211 211 11 126
Q ss_pred hcCCCCchHHHHHHHHHHHHHhhc
Q 013584 414 TLNMPQDLVATKIAVWTTILRAVM 437 (440)
Q Consensus 414 l~nlp~~~~~~~ia~~~~vi~~~t 437 (440)
+.++|-..+..-+...+..+...|
T Consensus 385 l~~lP~~~i~~~~~lil~~~f~vT 408 (485)
T PF02028_consen 385 LEQLPLSKILSILFLILIFIFFVT 408 (485)
T ss_dssp HHTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHh
Confidence 677876666666666665555544
No 105
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=84.93 E-value=51 Score=34.07 Aligned_cols=218 Identities=10% Similarity=0.063 Sum_probs=105.9
Q ss_pred CHHHHHHHHHHhhhccccchhHHHH-HhhC--HH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhhHh
Q 013584 165 SYAQALLNGMNVLCGVGILSTPYAA-KEGG--WF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGR 240 (440)
Q Consensus 165 s~~~~~~~ii~~iIG~GiLslP~a~-~~~G--~~-g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~~ 240 (440)
.....-+.++.-..|+|=|-.|-.+ +++| |. +.+.+++.|+.--.-+.+- +. +.+ .++.++++++--+.+
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiia--va-~~~--g~~~~l~~rv~~~f~- 82 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVA--LA-KVG--GGVDSLSTPIGKVAG- 82 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH--Hh-hcC--CCHHHHhhhcchHHH-
Confidence 4677788899999999988887654 3445 33 5555555444322221111 11 122 378888877643333
Q ss_pred HHHHHHHHHH--HHH-----HHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHH
Q 013584 241 IAVSVILYAE--LYA-----CCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISA 313 (440)
Q Consensus 241 ~l~~~~~~~~--~~~-----~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~ 313 (440)
.+...+.++. .+. ..++|=+. +.++++. ... ....+.++...+.+-++ +|.-+-+.++..
T Consensus 83 ~~f~~~i~l~IGP~~aiPRtaavsfEm~----i~p~~~~-------~~~-~~~ifs~iFF~i~~~l~-l~p~klvd~iGK 149 (439)
T PRK15433 83 VLLATVCYLAVGPLFATPRTATVSFEVG----IAPLTGD-------SAL-PLFIYSLVYFAIVILVS-LYPGKLLDTVGN 149 (439)
T ss_pred HHHHHHHHHHHhhccccCCccccchhhe----eeccCCc-------ccH-HHHHHHHHHHHHHHHHH-cChhhHHHHhHH
Confidence 3332222221 110 11122111 2233321 000 11234444444444433 344455555555
Q ss_pred HHHHHHHHHHHHhhhhhcccccCCCCCC-CCC--C-C-----C--chHHHHHHHHHHhhcccchHHHHh-hccCCCCh--
Q 013584 314 GGVIASILVVLCLFWVGLVDQVNIHSKG-TPL--N-L-----A--TLPVAIGLYGYCYSGHAVFPNIYT-SMAQPNQF-- 379 (440)
Q Consensus 314 ~~~i~~i~~ii~ii~~~~~~~~~~~~~~-~~~--~-~-----~--~~~~a~~~~~faf~g~~~i~~i~~-emk~p~k~-- 379 (440)
+-+...++.++.+++.++.+..+..... ... + + . +=..+++...|+ .-++..+.+ ..+++++.
T Consensus 150 ~LTP~LL~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg---~iii~~i~~~G~~~~~~~~k 226 (439)
T PRK15433 150 FLAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFG---IVIVNAARSRGVTEARLLTR 226 (439)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHcCCCCHHHHHH
Confidence 5556666666666777766543321111 111 1 0 1 112344444444 333344433 36666643
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHH
Q 013584 380 --PKVLITCFLICTAMYAGVAYMGYTM 404 (440)
Q Consensus 380 --~~ai~~a~~i~~~lY~~v~~~gy~~ 404 (440)
-++-.++.+.-.++|...+.+|...
T Consensus 227 ~t~~ag~ia~~~L~~vY~gL~~lGa~s 253 (439)
T PRK15433 227 YTVWAGLMAGVGLTLLYLALFRLGSDS 253 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3566677777788899998888755
No 106
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=84.76 E-value=51 Score=33.95 Aligned_cols=222 Identities=14% Similarity=0.211 Sum_probs=107.2
Q ss_pred CHHHHHHHHHHhhhccccchhHHHHH-hhC--HH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhhHh
Q 013584 165 SYAQALLNGMNVLCGVGILSTPYAAK-EGG--WF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGR 240 (440)
Q Consensus 165 s~~~~~~~ii~~iIG~GiLslP~a~~-~~G--~~-g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~~ 240 (440)
.....-+.++.-..|+|=|-.|-.+- ++| |. +.+.+++.|+.--.-+.+-. . +.++ ++.++++++--+.+.
T Consensus 4 ~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~--~-~~~~--~~~~l~~~v~~~f~~ 78 (427)
T PF05525_consen 4 DILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAV--A-KSGG--GIEDLASRVGPKFAL 78 (427)
T ss_pred hhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH--h-hcCC--CHHHHhcccCcHHHH
Confidence 44566778889999999888886543 344 43 66666665554333222211 1 2233 788888876544444
Q ss_pred HHHHHHHHH-HHHH-----HHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHH
Q 013584 241 IAVSVILYA-ELYA-----CCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAG 314 (440)
Q Consensus 241 ~l~~~~~~~-~~~~-----~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~ 314 (440)
.+..+.+.. ..+. ..++|-+ .+.++++. ... + ....+.++...+.+-++ +|.-+-+.++..+
T Consensus 79 if~~~i~l~IGP~~aiPRtaa~sfe~----~i~p~~~~-~~~-----~-~~~ifs~iFF~i~~~l~-~~p~kivd~iGk~ 146 (427)
T PF05525_consen 79 IFTILIYLSIGPLFAIPRTAAVSFEM----GIAPFFPE-NSN-----I-SLLIFSIIFFAITYLLS-LNPSKIVDRIGKF 146 (427)
T ss_pred HHHHHHHHHHHhcccCcchhhhhHHH----hhhccCCc-ccc-----c-chhhhhHHHHHHHHHHH-hchhhHHHHHHHH
Confidence 333332221 1111 1222222 23344432 100 0 12344444444444433 3445555555555
Q ss_pred HHHHHHHHHHHhhhhhcccccCCCCCCC-CCCCCch----------HHHHHHHHHHhhcccchHHHH-hhccCCCCh---
Q 013584 315 GVIASILVVLCLFWVGLVDQVNIHSKGT-PLNLATL----------PVAIGLYGYCYSGHAVFPNIY-TSMAQPNQF--- 379 (440)
Q Consensus 315 ~~i~~i~~ii~ii~~~~~~~~~~~~~~~-~~~~~~~----------~~a~~~~~faf~g~~~i~~i~-~emk~p~k~--- 379 (440)
-+...++.++++++.++.+..+...... ...-..+ ..+++-++|+- -++..+. ...+++++.
T Consensus 147 LTP~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~---iIi~~i~~~g~~~~k~~~~~ 223 (427)
T PF05525_consen 147 LTPILLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGI---IIINAIRQKGYKDKKEIKKY 223 (427)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHH---HHHHHHHHhCCCCHHHHHHH
Confidence 5566666666677777665433221111 1111111 12222233322 2222222 223444443
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013584 380 -PKVLITCFLICTAMYAGVAYMGYTMFG 406 (440)
Q Consensus 380 -~~ai~~a~~i~~~lY~~v~~~gy~~fG 406 (440)
-++-.++.+.-.++|...+.+|...-+
T Consensus 224 ~~~ag~ia~~lL~~IY~gL~~lGa~~~~ 251 (427)
T PF05525_consen 224 TIKAGLIAGILLALIYGGLAYLGATSSG 251 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 355666777777888888888876655
No 107
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=84.73 E-value=0.58 Score=47.17 Aligned_cols=8 Identities=13% Similarity=0.314 Sum_probs=3.2
Q ss_pred ccccCCCC
Q 013584 109 AATTKPLL 116 (440)
Q Consensus 109 ~~~~~pll 116 (440)
++.+-|-+
T Consensus 226 PQDIDPSF 233 (458)
T PF10446_consen 226 PQDIDPSF 233 (458)
T ss_pred CCCCCCCC
Confidence 33334444
No 108
>PRK09950 putative transporter; Provisional
Probab=84.18 E-value=60 Score=34.26 Aligned_cols=160 Identities=12% Similarity=-0.002 Sum_probs=77.7
Q ss_pred CCCHHHHHHHHHHhhhccccchh----HHH-HH------hhCHH-----HHHHHHH---HHHHHHH--HHHHHHH-hhhc
Q 013584 163 QSSYAQALLNGMNVLCGVGILST----PYA-AK------EGGWF-----GLLILVA---FGVLSFY--TGILLRR-CLDS 220 (440)
Q Consensus 163 ~~s~~~~~~~ii~~iIG~GiLsl----P~a-~~------~~G~~-----g~illi~---~g~l~~~--t~~lL~~-~~~~ 220 (440)
+-|.++=+.+++.+-+|+|++-- |.. +. +.|.. +...-.+ .-..+.| .+..++. ...|
T Consensus 83 efS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~e~~s~~A~~~A~~~t~fHWG~~aWaiY~l~~l~iaY~~~~r 162 (506)
T PRK09950 83 EYSTLSWLFMFICAGLGSSTLYWGVMEWAYYYQTPGLNIAPRSPKALEYSVSYSFFHWGISAWATYALASLIMAYHFHVR 162 (506)
T ss_pred CccchhHHHHHHHHhhhhHHHHHhhHhHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 35556666688999999997632 322 21 12221 1111111 1111222 2334444 3324
Q ss_pred CCCCCCHHHHHHHHhhhh----HhHHHHHHHHHHHHHHHHHHHHHHH----hhHhhhccccccCcCccccchhHHHHHHH
Q 013584 221 EPGLETYPDIGQAAFGTA----GRIAVSVILYAELYACCIEYIILES----DNLSSLFPNAHLSFGGFYLNSHHLFALMT 292 (440)
Q Consensus 221 ~~~~~sy~~i~~~~fG~~----~~~l~~~~~~~~~~~~~v~y~i~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~ii~ 292 (440)
+....+....++-.+|++ .+.+++++..+...+..+.-+-+.. .-+..++.. +.. . . .....++.
T Consensus 163 k~~pl~iss~~~pllG~~~~g~~G~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi-~~~---~--~-~~~~ii~v 235 (506)
T PRK09950 163 KNKGLSLSGIIAAITGVKPQGPWGRLVDLMFLIATVGALTISLVVTAATFTRGLSALTGL-PNN---F--T-VQAFVILL 235 (506)
T ss_pred cCCCCchHHhhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCC-CCc---h--H-HHHHHHHH
Confidence 445557888888888853 4567777666654443333333322 233334321 111 0 1 12222233
Q ss_pred HHHHHhhhhcccc-hhHHHHHHHHHHHHHHHHHHhhhh
Q 013584 293 TLAVLPTCWLRDL-TVLSYISAGGVIASILVVLCLFWV 329 (440)
Q Consensus 293 ~liv~pl~~~r~l-~~l~~~s~~~~i~~i~~ii~ii~~ 329 (440)
..+++-++....+ +.++++|.+.+...+.+++.+++.
T Consensus 236 i~~if~~S~~~Gl~kGIk~LS~~N~~la~~ll~~vli~ 273 (506)
T PRK09950 236 SGVIFCLSSYIGIDNGLQRLSKMVGWGAFLFALLVLIV 273 (506)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeec
Confidence 3333344444455 777788877766666555555444
No 109
>PLN03223 Polycystin cation channel protein; Provisional
Probab=82.57 E-value=1e+02 Score=36.23 Aligned_cols=22 Identities=9% Similarity=0.067 Sum_probs=14.6
Q ss_pred CCCCCchHHHHHHHHHHhhccc
Q 013584 343 PLNLATLPVAIGLYGYCYSGHA 364 (440)
Q Consensus 343 ~~~~~~~~~a~~~~~faf~g~~ 364 (440)
...+..+..++-..+.-..|..
T Consensus 1356 ve~FSTf~sSL~TLFqMLLGDf 1377 (1634)
T PLN03223 1356 SVHFSDMTDSINSLFENLLGDI 1377 (1634)
T ss_pred chhhcCHHHHHHHHHHHHHcCc
Confidence 3467777777777766666653
No 110
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=80.29 E-value=78 Score=32.91 Aligned_cols=47 Identities=19% Similarity=0.311 Sum_probs=33.0
Q ss_pred CCHHHHHHHHhhh-hHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcc
Q 013584 225 ETYPDIGQAAFGT-AGRIAVSVILYAELYACCIEYIILESDNLSSLFP 271 (440)
Q Consensus 225 ~sy~~i~~~~fG~-~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~ 271 (440)
..+.++...++|. .+..++.+...+..+++..+++...+..+..+-.
T Consensus 289 ~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ar 336 (482)
T TIGR00907 289 QPIAQIFYNALGNKAGAIFLLCLILVTSFFCAITCMTANSRMIYAFSR 336 (482)
T ss_pred ChHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3577787888887 5666666666677777777887777777765543
No 111
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=78.95 E-value=25 Score=38.11 Aligned_cols=120 Identities=13% Similarity=0.085 Sum_probs=65.4
Q ss_pred HHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhhhhccccc-----C--CCC-CCCCCCCCchHHHHHHHHHHhh
Q 013584 290 LMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCLFWVGLVDQV-----N--IHS-KGTPLNLATLPVAIGLYGYCYS 361 (440)
Q Consensus 290 ii~~liv~pl~~~r~l~~l~~~s~~~~i~~i~~ii~ii~~~~~~~~-----~--~~~-~~~~~~~~~~~~a~~~~~faf~ 361 (440)
+.++=+++.++..|.++..+.+..+...+-.++++++++.++.-+. . ..+ -....+..-+..|...++|+++
T Consensus 220 l~~~Wliv~~~i~KGvks~GKvvY~~a~fPyviL~iLliRgvTL~Ga~~Gi~~~l~~~~~kL~~~~vW~dA~~QiffSls 299 (629)
T KOG3660|consen 220 LALAWLIVFFCIWKGVKSSGKVVYFTATFPYVILIVLLIRGVTLPGAGDGINFYLTPDWTKLLDPQVWGDAATQIFFSLS 299 (629)
T ss_pred HHHHHHHHHHHHhhcccccCcEEEEEehhHHHHHHHHHHHHccCCCHHHHHHHHHhhhhHhhcChhhHHHHHHhHHHhHH
Confidence 3344456667777888877777665555555555555555543210 0 011 1113444556778888888887
Q ss_pred -cccchHHHHhhccCCCC-----hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 013584 362 -GHAVFPNIYTSMAQPNQ-----FPKVLITCFLICTAMYAGVAYMGYTMFGEST 409 (440)
Q Consensus 362 -g~~~i~~i~~emk~p~k-----~~~ai~~a~~i~~~lY~~v~~~gy~~fG~~~ 409 (440)
|+..+..+.+-.|.... +-.++.-...-...-.+.+++.|+++.=..+
T Consensus 300 i~~G~li~laSynk~~nN~yrDa~lv~~~~~~tS~~~g~~iFsilGfla~~~~v 353 (629)
T KOG3660|consen 300 IGFGGLIALASYNKFNNNCYRDAILVVLLDTITSLLAGFAIFSILGFLAHEQGV 353 (629)
T ss_pred HHHhhhheeeeeeccCCcceeeeeeeeecccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 66666666666664332 2223333333444455666677777764333
No 112
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=77.07 E-value=12 Score=38.75 Aligned_cols=158 Identities=16% Similarity=0.102 Sum_probs=90.6
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHH-HHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcc-cchhHHHHH
Q 013584 235 FGTAGRIAVSVILYAELYACCIE-YIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLR-DLTVLSYIS 312 (440)
Q Consensus 235 fG~~~~~l~~~~~~~~~~~~~v~-y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r-~l~~l~~~s 312 (440)
.+|.+.+++.+.+.+.+++..++ ..+..|.-+..++|.+- ...+-.++..+++.++.|--+++ +-+.+.+++
T Consensus 339 G~RAgvFfi~~~f~laql~~NISan~vaagnDl~~L~Pkyi------nIrRG~~~~a~ia~a~~PWnll~SSs~F~t~Ls 412 (572)
T KOG2466|consen 339 GARAGVFFIGFGFALAQLGTNISANSVAAGNDLSALLPKYI------NIRRGALICAIIAWAICPWNLLSSSSKFLTALS 412 (572)
T ss_pred ccchhhhHHHHHHHHHHHhcchhccccccchhhHhhCcceE------EecccHHHHHHHHHHhCchHHhccccHHHHHHH
Confidence 34578899999999888876664 44556666788887653 12223456666688889988776 344555555
Q ss_pred HHHHHHHHHHHHHhhhhhcccccC------CCC-CCCC-CCCCchHHHHHHHHHHhhcccchHHHHhhccCCCC------
Q 013584 313 AGGVIASILVVLCLFWVGLVDQVN------IHS-KGTP-LNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ------ 378 (440)
Q Consensus 313 ~~~~i~~i~~ii~ii~~~~~~~~~------~~~-~~~~-~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k------ 378 (440)
..+++..-+..+.+.=..++.+.. +.. ++.. ....+ ..-=..+.|-.+..+++|-+..++.+..+
T Consensus 413 sysvfLspiagViiaDyF~iRk~~~~i~~~y~~~~g~yY~~~~G-~NwRA~vA~vcG~~P~lpG~a~~V~~~~~v~~G~~ 491 (572)
T KOG2466|consen 413 SYSVFLSPIAGVIIADYFLIRKGYYKITHLYSLSKGSYYYFKKG-INWRAFVAYVCGMAPNLPGFAGSVGADIKVPDGAV 491 (572)
T ss_pred HHHHHHhhccceEeehhheeecceeeeeeeeecCCCceeeeecC-ccHHHHHHHHhccccCCcchhhhcCcccccccceE
Confidence 554443332222111111111100 111 1111 11111 11112355666778999999988874333
Q ss_pred --hhhHHHHHHHHHHHHHHHHHH
Q 013584 379 --FPKVLITCFLICTAMYAGVAY 399 (440)
Q Consensus 379 --~~~ai~~a~~i~~~lY~~v~~ 399 (440)
+......++++.++.|.++..
T Consensus 492 ~~yy~~yf~sf~isf~vYwiLc~ 514 (572)
T KOG2466|consen 492 KLYYLDYFFSFLISFLVYWILCL 514 (572)
T ss_pred EEEechHHHHHHHHHHHHHHHHh
Confidence 345778899999999988765
No 113
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.53 E-value=84 Score=32.46 Aligned_cols=10 Identities=20% Similarity=0.258 Sum_probs=7.5
Q ss_pred HHHHhhhccc
Q 013584 172 NGMNVLCGVG 181 (440)
Q Consensus 172 ~ii~~iIG~G 181 (440)
.++.+.+|+|
T Consensus 293 ~Lfsa~lGsG 302 (593)
T KOG1277|consen 293 LLFSAVLGSG 302 (593)
T ss_pred HHHHHHhccc
Confidence 4667778888
No 114
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=74.66 E-value=1.2e+02 Score=32.07 Aligned_cols=21 Identities=24% Similarity=0.089 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHhhhccccch
Q 013584 164 SSYAQALLNGMNVLCGVGILS 184 (440)
Q Consensus 164 ~s~~~~~~~ii~~iIG~GiLs 184 (440)
-+.+.=+++++.+-+|+|++-
T Consensus 88 fs~~SW~aMLFaAGmGigl~f 108 (537)
T COG1292 88 FSTLSWLAMLFAAGMGIGLLF 108 (537)
T ss_pred cchhHHHHHHHHcccCceeeE
Confidence 455555668889999999763
No 115
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=72.73 E-value=1.3e+02 Score=31.43 Aligned_cols=93 Identities=12% Similarity=-0.001 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHHHhhhccccchh----HHH-HHh------hC-H---H--HHHHHHHH---HHHHHHH--HHHHHHhhhc
Q 013584 163 QSSYAQALLNGMNVLCGVGILST----PYA-AKE------GG-W---F--GLLILVAF---GVLSFYT--GILLRRCLDS 220 (440)
Q Consensus 163 ~~s~~~~~~~ii~~iIG~GiLsl----P~a-~~~------~G-~---~--g~illi~~---g~l~~~t--~~lL~~~~~~ 220 (440)
+-|.++=+.+++.+-+|+|++-- |.. +.. .+ . . +...-++= -..+.|+ +..++...-+
T Consensus 36 efS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~~~~s~~~A~~~A~~~~~fHWG~~aWaiY~l~ala~aY~~~r 115 (453)
T TIGR00842 36 EFSTLSWLAMLFAAGMGIGLMFWGVAEPLTYYLTPPFGAGPTSTTQAQEQALAYTLFHWGIHAWAIYALVGLALAYFHVR 115 (453)
T ss_pred CCcchHHHHHHHHHhhhhhhhhhHhhhHHHHhCCCCCCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhhee
Confidence 35556666688999999997632 322 211 11 1 0 11111111 1111222 2333443334
Q ss_pred CCCCCCHHHHHHHHhhhh----HhHHHHHHHHHHHHHHH
Q 013584 221 EPGLETYPDIGQAAFGTA----GRIAVSVILYAELYACC 255 (440)
Q Consensus 221 ~~~~~sy~~i~~~~fG~~----~~~l~~~~~~~~~~~~~ 255 (440)
+....+..+.++-.+|++ .+.+++++..+...+..
T Consensus 116 k~~~~~iss~~~pllG~~~~g~~g~~ID~l~v~ati~G~ 154 (453)
T TIGR00842 116 KGLPLRLSSALVPLLGERVNGPIGKAIDIMALVATLFGV 154 (453)
T ss_pred cCCCCchhhhhhcccCCcccCccHHHHHHHHHHHHHHHH
Confidence 555557888888888753 34666766655444333
No 116
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=72.51 E-value=78 Score=30.94 Aligned_cols=8 Identities=0% Similarity=0.281 Sum_probs=3.7
Q ss_pred CHHHHHHH
Q 013584 226 TYPDIGQA 233 (440)
Q Consensus 226 sy~~i~~~ 233 (440)
.|.++.+.
T Consensus 98 ~~~~~i~~ 105 (320)
T PF03845_consen 98 EFSEFIKT 105 (320)
T ss_pred HHHHHHHH
Confidence 34554444
No 117
>PHA02608 67 prohead core protein; Provisional
Probab=70.51 E-value=1.6 Score=33.00 Aligned_cols=12 Identities=50% Similarity=0.689 Sum_probs=7.2
Q ss_pred cceeecCCchhh
Q 013584 8 HSFYIESDEEED 19 (440)
Q Consensus 8 ~~~~~~~~~~~~ 19 (440)
+++.||.++.++
T Consensus 41 ~sv~iEGEe~ed 52 (80)
T PHA02608 41 RSVMIEGEEPED 52 (80)
T ss_pred HHHhhcCCCCcc
Confidence 466777666443
No 118
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=68.72 E-value=98 Score=31.74 Aligned_cols=45 Identities=20% Similarity=0.157 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhhH
Q 013584 195 FGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAG 239 (440)
Q Consensus 195 ~g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~ 239 (440)
.++++..+..++..++...|....+..++...|..-.-..+|-..
T Consensus 41 ~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~~g~~~gf~~ 85 (435)
T PRK10435 41 WGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGEISPAFGFQT 85 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHCcHHHHHH
Confidence 444444455667778888888888888888888753433344333
No 119
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=66.95 E-value=2.9 Score=47.23 Aligned_cols=21 Identities=19% Similarity=0.107 Sum_probs=11.4
Q ss_pred CCCCHHHHHHHHHHhhhcccc
Q 013584 162 RQSSYAQALLNGMNVLCGVGI 182 (440)
Q Consensus 162 ~~~s~~~~~~~ii~~iIG~Gi 182 (440)
+.+|...+.....+..-|+|-
T Consensus 1941 ~s~Sqgaa~a~AAgeasgagS 1961 (3015)
T KOG0943|consen 1941 GSISQGAAAAAAAGEASGAGS 1961 (3015)
T ss_pred CccchHHHHHHHhhcccCCCc
Confidence 344555555555566666653
No 120
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=66.35 E-value=1.6e+02 Score=30.04 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=31.9
Q ss_pred CCHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhc
Q 013584 225 ETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLF 270 (440)
Q Consensus 225 ~sy~~i~~~~fG~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~ 270 (440)
++..+++++.++++.++...+...+...++.+..+...+--++.++
T Consensus 64 ~~l~~~~r~~~~~~~~~~~~~~~~l~ii~~~~~e~~G~a~al~ll~ 109 (390)
T TIGR01197 64 LDLAEVCREHYPKVPRITLWILAELAIIATDMAEVIGTAIALNLLS 109 (390)
T ss_pred CCHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5899999999998777666555555556666666666665665554
No 121
>PF14851 FAM176: FAM176 family
Probab=66.30 E-value=5.7 Score=34.65 Aligned_cols=12 Identities=33% Similarity=0.553 Sum_probs=5.5
Q ss_pred hhhHh-hcccccC
Q 013584 62 QSYRQ-SIDLYSS 73 (440)
Q Consensus 62 ~~~~~-~~~~~~~ 73 (440)
|+||- |.+.|++
T Consensus 103 ~~~~~ls~nvf~s 115 (153)
T PF14851_consen 103 QFDRTLSVNVFTS 115 (153)
T ss_pred CCCCCCccCCccc
Confidence 44444 4454443
No 122
>TIGR00909 2A0306 amino acid transporter.
Probab=64.52 E-value=1.7e+02 Score=29.75 Aligned_cols=46 Identities=11% Similarity=-0.023 Sum_probs=37.5
Q ss_pred CHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcc
Q 013584 226 TYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFP 271 (440)
Q Consensus 226 sy~~i~~~~fG~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~ 271 (440)
...++.+...|+++..++.+...+..+++..+.+...+..+..+-.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~ 310 (429)
T TIGR00909 265 PLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSR 310 (429)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4667777888899988888988889999998888888888776643
No 123
>TIGR00353 nrfE c-type cytochrome biogenesis protein CcmF. The product of this gene is required for the biogenesis of C-type cytochromes. This gene is thought to have eleven transmembrane helices. Disruption of this gene in Paracoccus denitrificans, encoding a putative transporter, results in formation of an unstable apocytochrome c and deficiency in siderophore production.
Probab=64.30 E-value=2.1e+02 Score=30.80 Aligned_cols=38 Identities=21% Similarity=0.099 Sum_probs=23.3
Q ss_pred hhccccchhHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Q 013584 177 LCGVGILSTPYAAKEGGWFGLLILVAFGVLSFYTGILL 214 (440)
Q Consensus 177 iIG~GiLslP~a~~~~G~~g~illi~~g~l~~~t~~lL 214 (440)
++.+|++...++|...+.-|..++++.+++...+..++
T Consensus 240 ~~rsg~l~svH~f~~~~~~g~~ll~~l~~~~~~~l~l~ 277 (576)
T TIGR00353 240 IVRSGILVSVHAFALDNTRGVPLLALFVLVIGGSLALY 277 (576)
T ss_pred HhccCCCccccccccCCCccHHHHHHHHHHHHHHHHHH
Confidence 55788888888888655446655555544444443333
No 124
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=64.08 E-value=31 Score=26.84 Aligned_cols=56 Identities=7% Similarity=0.079 Sum_probs=31.4
Q ss_pred HHHHHHHhhcccchHHHHhhccCCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 013584 353 IGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLITCFLICTAMYAGVAYMGYTMFGEST 409 (440)
Q Consensus 353 ~~~~~faf~g~~~i~~i~~emk~p~k-~~~ai~~a~~i~~~lY~~v~~~gy~~fG~~~ 409 (440)
.|++..+-.|...+..+.+.-.+|.. ..|++.+. .++.-+-+++|++.|.+||-..
T Consensus 17 ~GIiLL~~ACIFAfidFSK~~s~~~~~~wRalSii-~FIlG~vl~lGilifs~y~~C~ 73 (91)
T PHA02680 17 CGVLLLTAACVFAFVDFSKNTSNVTDYVWRALSVT-CFIVGAVLLLGLFVFSMYRKCS 73 (91)
T ss_pred HHHHHHHHHHHHhhhhhhccCCCCcchhHHHHHHH-HHHHHHHHHHHHHHHHHhcccC
Confidence 34444444444444555555546655 55555433 3333445677899999999443
No 125
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=61.23 E-value=69 Score=33.45 Aligned_cols=105 Identities=14% Similarity=0.108 Sum_probs=55.7
Q ss_pred HHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccCcC----ccccchhHHHHHHHHHHHHhhhhc
Q 013584 227 YPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFG----GFYLNSHHLFALMTTLAVLPTCWL 302 (440)
Q Consensus 227 y~~i~~~~fG~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~ii~~liv~pl~~~ 302 (440)
-.+.+++.+|.+. +.+-+...+.++|..-+.+...+..+......-..+.. .........-.+..+++.+.+.++
T Consensus 275 av~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~ 353 (479)
T KOG1287|consen 275 AVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLI 353 (479)
T ss_pred HHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHH
Confidence 4456889999888 77888888888887766665555555443322111100 001111222333334444444555
Q ss_pred ccc-hhHHHHHHHHHHHHHHHHHHhhhhhcc
Q 013584 303 RDL-TVLSYISAGGVIASILVVLCLFWVGLV 332 (440)
Q Consensus 303 r~l-~~l~~~s~~~~i~~i~~ii~ii~~~~~ 332 (440)
.++ .-+.+++...-+..++.++.++|.-..
T Consensus 354 ~d~~~LIny~sf~~~l~~~l~~~gll~lR~k 384 (479)
T KOG1287|consen 354 GDFDQLINYVSFAYWLFRGLSMAGLLWLRWK 384 (479)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 433 334466655556666666666665433
No 126
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=60.49 E-value=1.1e+02 Score=27.62 Aligned_cols=107 Identities=14% Similarity=0.095 Sum_probs=54.3
Q ss_pred HHHHhhhhh-cccccCCCCCCCCCCCCchHHHHHHHHHHhhcccchHHHHhhcc---CCCChhhHHHHHHHHHHHHHHHH
Q 013584 322 VVLCLFWVG-LVDQVNIHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMA---QPNQFPKVLITCFLICTAMYAGV 397 (440)
Q Consensus 322 ~ii~ii~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk---~p~k~~~ai~~a~~i~~~lY~~v 397 (440)
+++...|.. ..++..++.....+||-.+...+|.+.. .|...+. ++-.. .+++..|.+-..+-.+.++..++
T Consensus 12 ~~lv~~W~~~~rgG~~w~~~~~~Fn~HP~lMv~Gfi~L--~geAiL~--Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vv 87 (179)
T cd08762 12 VVLVVHWNQMWRGGFAWDGSSKNFNWHPVLMVTGMVVL--YGNAALV--YRIPLTWGGPKLPWKLLHAGLLLLAFILTVI 87 (179)
T ss_pred HHHHHHHHHHcCCccCCCCCCCceeehHHHHHHHHHHH--HHHHHHh--hcccccccccchhHHHHHHHHHHHHHHHHHH
Confidence 333444443 2223333333346777666665554443 2332222 22111 34456778888888888888888
Q ss_pred HHHHHHHhcCCchhhhhcCCCCchHHHHHHHHHHHHH
Q 013584 398 AYMGYTMFGESTLSQFTLNMPQDLVATKIAVWTTILR 434 (440)
Q Consensus 398 ~~~gy~~fG~~~~~~il~nlp~~~~~~~ia~~~~vi~ 434 (440)
|+.....|-+.. .+-+.+.-+......++.+..++
T Consensus 88 Gl~avf~~hn~~--~~~nlySlHSWlGl~t~~Lf~lQ 122 (179)
T cd08762 88 GLCAVFNFHNVH--HTANLYSLHSWVGICTVALFTCQ 122 (179)
T ss_pred HHHHHHHhcccc--CccchhhHHHHHHHHHHHHHHHH
Confidence 886666665442 33222233444444444444433
No 127
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=60.43 E-value=7.5 Score=26.09 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 013584 382 VLITCFLICTAMYAGVAYMGYTMFGEST 409 (440)
Q Consensus 382 ai~~a~~i~~~lY~~v~~~gy~~fG~~~ 409 (440)
+..+++.+.+++-.++|...|.+||+..
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCCc
Confidence 4566777788888888888899999643
No 128
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=60.35 E-value=7.1 Score=26.50 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013584 380 PKVLITCFLICTAMYAGVAYMGYTMFGES 408 (440)
Q Consensus 380 ~~ai~~a~~i~~~lY~~v~~~gy~~fG~~ 408 (440)
..+..+++.+.+++..++|..-|.+||+.
T Consensus 5 e~A~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 5 SPALSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred chhHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 34677778888888888888889999965
No 129
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=60.14 E-value=1.8e+02 Score=28.71 Aligned_cols=50 Identities=14% Similarity=0.227 Sum_probs=26.5
Q ss_pred HHHHHHhhhccccchhHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 013584 170 LLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSE 221 (440)
Q Consensus 170 ~~~ii~~iIG~GiLslP~a~~~~G~~g~illi~~g~l~~~t~~lL~~~~~~~ 221 (440)
...+.+.....+.++ ....+.||+++++..+.+++..+....+.+..+..
T Consensus 15 ~~iG~gil~~P~~~~--~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~ 64 (359)
T TIGR00912 15 TMIGSGLLTLPALVS--QSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK 64 (359)
T ss_pred HHHHHHHHhhhHHHH--hccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 334444444555332 23456677766666666666666665555544443
No 130
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=58.84 E-value=5.1 Score=43.40 Aligned_cols=15 Identities=13% Similarity=0.113 Sum_probs=9.4
Q ss_pred CCCCCCCCHHHHHHH
Q 013584 158 HPISRQSSYAQALLN 172 (440)
Q Consensus 158 ~~~~~~~s~~~~~~~ 172 (440)
..+.|.-|++.+.++
T Consensus 306 l~LlRHWSLydSm~~ 320 (622)
T PF02724_consen 306 LMLLRHWSLYDSMYH 320 (622)
T ss_pred eeeeccCcHHHHHhh
Confidence 345677777776554
No 131
>KOG2652 consensus RNA polymerase II transcription initiation factor TFIIA, large chain [Transcription]
Probab=58.18 E-value=5 Score=39.23 Aligned_cols=6 Identities=17% Similarity=0.667 Sum_probs=2.3
Q ss_pred CChhhH
Q 013584 60 WPQSYR 65 (440)
Q Consensus 60 ~~~~~~ 65 (440)
|==+++
T Consensus 321 WKc~LK 326 (348)
T KOG2652|consen 321 WKCYLK 326 (348)
T ss_pred eeEEee
Confidence 433333
No 132
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=57.17 E-value=2.6e+02 Score=29.56 Aligned_cols=160 Identities=13% Similarity=-0.011 Sum_probs=73.6
Q ss_pred CCCHHHHHHHHHHhhhccccchh----HHH-HH------hhCHH-----HHHHHHH---HHHHH--HHHHHHHHHhhhcC
Q 013584 163 QSSYAQALLNGMNVLCGVGILST----PYA-AK------EGGWF-----GLLILVA---FGVLS--FYTGILLRRCLDSE 221 (440)
Q Consensus 163 ~~s~~~~~~~ii~~iIG~GiLsl----P~a-~~------~~G~~-----g~illi~---~g~l~--~~t~~lL~~~~~~~ 221 (440)
+-|.++=+.+++.+-+|+|++-- |.. +. +.|.. +...-.+ .-..+ +..+..++...-++
T Consensus 85 efs~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~PP~g~e~~s~~A~~~A~~~~~fHWG~~aWaiY~~~~la~ay~~y~~ 164 (504)
T PRK03356 85 EFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFGYFFFVR 164 (504)
T ss_pred CccchHHHHHHHHHhhhhhhhhhhhhhHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHhc
Confidence 35566666788999999997632 422 11 11211 1111111 11111 22233344444344
Q ss_pred CCC-CCHHHHHHHHhhhh-----HhHHHHHHHHHHHHHHHHHHHHHHH----hhHhhhccccccCcCccccchhHHHHHH
Q 013584 222 PGL-ETYPDIGQAAFGTA-----GRIAVSVILYAELYACCIEYIILES----DNLSSLFPNAHLSFGGFYLNSHHLFALM 291 (440)
Q Consensus 222 ~~~-~sy~~i~~~~fG~~-----~~~l~~~~~~~~~~~~~v~y~i~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~ii 291 (440)
... ......++-.+|++ .+.+++++..+...+..+.-+-+.. .-++.++.- +.. ... ....++
T Consensus 165 ~~p~l~iss~~~pllG~~~~~g~~G~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi-~~~-----~~~-~~~ii~ 237 (504)
T PRK03356 165 KMDVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGI-PHT-----LQL-DAIIIT 237 (504)
T ss_pred CCCcccHHHHHHHHcCCCcccCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCC-CCc-----hHH-HHHHHH
Confidence 443 36788888888842 3567777666654444433333322 233344321 111 011 122222
Q ss_pred HHHHHHhhhhcccc-hhHHHHHHHHHHHHHHHHHHhhhh
Q 013584 292 TTLAVLPTCWLRDL-TVLSYISAGGVIASILVVLCLFWV 329 (440)
Q Consensus 292 ~~liv~pl~~~r~l-~~l~~~s~~~~i~~i~~ii~ii~~ 329 (440)
...+++.++....+ +.++++|.+-+...+.+++.+++.
T Consensus 238 ~i~~if~~S~~~Gl~kGIk~LS~~N~~la~~ll~~vli~ 276 (504)
T PRK03356 238 CWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIV 276 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 22223333333333 667777776666555555554444
No 133
>PLN02680 carbon-monoxide oxygenase
Probab=56.98 E-value=1.4e+02 Score=28.05 Aligned_cols=86 Identities=12% Similarity=0.126 Sum_probs=50.2
Q ss_pred CCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhcCCCCchH
Q 013584 343 PLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAGVAYMGYTMFGESTLSQFTLNMPQDLV 422 (440)
Q Consensus 343 ~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k~~~ai~~a~~i~~~lY~~v~~~gy~~fG~~~~~~il~nlp~~~~ 422 (440)
.+||--+...+|.+. ..|...+. ++..+.+++.+|.+-..+-.+.++-.++|+.....|-+.. .+-+-..-+..
T Consensus 46 ~Fn~HPlLM~~Gfi~--l~geAIL~--yr~~~~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~--~~~nfySlHSW 119 (232)
T PLN02680 46 IFNVHPVLMVIGLVL--LNGEAMLA--YKTVPGTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEK--GIDNFYSLHSW 119 (232)
T ss_pred eEechHHHHHHHHHH--HHHHHHhc--cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CccccccHHHH
Confidence 667777777666554 23333333 3444555567788888888888888888886655554432 33222233455
Q ss_pred HHHHHHHHHHHH
Q 013584 423 ATKIAVWTTILR 434 (440)
Q Consensus 423 ~~~ia~~~~vi~ 434 (440)
...+++.+..++
T Consensus 120 lGl~t~iL~~lQ 131 (232)
T PLN02680 120 LGLACLFLFSLQ 131 (232)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 134
>PHA02664 hypothetical protein; Provisional
Probab=56.15 E-value=9.1 Score=37.08 Aligned_cols=9 Identities=22% Similarity=0.220 Sum_probs=4.3
Q ss_pred CCCcceeec
Q 013584 5 VSDHSFYIE 13 (440)
Q Consensus 5 ~~~~~~~~~ 13 (440)
.-|+.+..|
T Consensus 424 ~adqdve~~ 432 (534)
T PHA02664 424 PADQDVEAE 432 (534)
T ss_pred ccccccccc
Confidence 345555544
No 135
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=55.15 E-value=2.4e+02 Score=28.60 Aligned_cols=27 Identities=15% Similarity=0.479 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013584 380 PKVLITCFLICTAMYAGVAYMGYTMFG 406 (440)
Q Consensus 380 ~~ai~~a~~i~~~lY~~v~~~gy~~fG 406 (440)
..+...+++...+.|+....+++..|+
T Consensus 419 a~ga~aSMi~g~~~y~~l~~~~~ki~~ 445 (473)
T COG4145 419 AAGALASMIVGLVLYVLLAFLGIKILG 445 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhe
Confidence 456677888888999999999998886
No 136
>CHL00020 psbN photosystem II protein N
Probab=54.82 E-value=7.6 Score=25.99 Aligned_cols=27 Identities=22% Similarity=0.408 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013584 382 VLITCFLICTAMYAGVAYMGYTMFGES 408 (440)
Q Consensus 382 ai~~a~~i~~~lY~~v~~~gy~~fG~~ 408 (440)
+..+++.+.+++..++|..-|.+||+.
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 566777888888888888889999965
No 137
>PHA03048 IMV membrane protein; Provisional
Probab=51.08 E-value=68 Score=25.11 Aligned_cols=61 Identities=11% Similarity=0.108 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhcccchHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh
Q 013584 350 PVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAGVAYMGYTMFGESTLSQ 412 (440)
Q Consensus 350 ~~a~~~~~faf~g~~~i~~i~~emk~p~k~~~ai~~a~~i~~~lY~~v~~~gy~~fG~~~~~~ 412 (440)
....|++..+-.|...+..+... |.+....|++.+. .++.-+-+++|++-|.+||....++
T Consensus 14 vli~GIiLL~~aCIfAfidfsK~-k~~~~~wRalsii-~FIlgivl~lG~~ifsmy~r~C~~~ 74 (93)
T PHA03048 14 ALIGGIILLAASCIFAFVDFSKN-KATVTVWRALSGI-AFVLGIVMTIGMLIYSMWGRYCTPS 74 (93)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcC-CCcchhHHHHHHH-HHHHHHHHHHHHHHHHHHhcccCCC
Confidence 34455555555555555566655 3333455655433 3344455778999999999665544
No 138
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.58 E-value=9 Score=38.28 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=6.0
Q ss_pred CcccccccCCCCCCc
Q 013584 105 PESLAATTKPLLPTV 119 (440)
Q Consensus 105 ~~~~~~~~~pll~~~ 119 (440)
+++++..+.|--.++
T Consensus 393 ~nsIc~~tspTs~d~ 407 (514)
T KOG3130|consen 393 ENSICSDTSPTSADE 407 (514)
T ss_pred cCcccccCCCCcccc
Confidence 334444444433333
No 139
>PF10488 PP1c_bdg: Phosphatase-1 catalytic subunit binding region; InterPro: IPR019523 This entry represents the conserved C terminus of the regulatory subunit (15A and 15B) of protein phosphatase 1. This C-terminal domain appears to be a binding region for the catalytic subunit (PP1C) of protein phosphatase-1, which may in some circumstances also be retroviral in origin since it is found in both herpes simplex virus and in mouse and man. This domain is found in Gadd-34 apoptosis-associated proteins as well as the constitutive repressor of eIF2-alpha phosphorylation/protein phosphatase 1, regulatory (inhibitor) subunit 15b, otherwise known as CReP. Diverse stressful conditions are associated with phosphorylation of the alpha-subunit of eukaryotic translation initiation factor 2 (eIF2-alpha) on serine 51. This signaling event, which is conserved from yeast to mammals, negatively regulates the guanine nucleotide exchange factor, eIF2-B and inhibits the recycling of eIF2 to its active GTP bound form. In mammalian cells eIF2-alpha phosphorylation emerges as an important event in stress signaling that impacts on gene expression at both the translational and transcriptional levels [].
Probab=46.88 E-value=9.4 Score=36.91 Aligned_cols=39 Identities=31% Similarity=0.519 Sum_probs=24.2
Q ss_pred cCCCCCCCCCccccccCCCCCCCCCCCChhhHhhcccccC
Q 013584 34 EENDGNDSDSSAENQQQTHPGSYNTSWPQSYRQSIDLYSS 73 (440)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (440)
++||+.|||.++-+.....++..-+.|- |+-+|+|.|..
T Consensus 41 ~eddgfdSd~s~s~s~~e~d~e~~~LW~-s~~~s~dpynp 79 (307)
T PF10488_consen 41 DEDDGFDSDGSLSESDSEQDSEGLHLWN-SFCESVDPYNP 79 (307)
T ss_pred ccccccccccccccccccchhhhHHHHH-HhhhccCCCCc
Confidence 3455667666654433344555567786 57778887754
No 140
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=46.78 E-value=2.2e+02 Score=33.69 Aligned_cols=33 Identities=9% Similarity=0.241 Sum_probs=23.0
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013584 376 PNQFPKVLITCFLICTAMYAGVAYMGYTMFGES 408 (440)
Q Consensus 376 p~k~~~ai~~a~~i~~~lY~~v~~~gy~~fG~~ 408 (440)
-.|-.+.+.+.-++..++-.+++++||+.|-++
T Consensus 2415 VTRNgrSIvlTa~LALILvYlFSIiGflffkdD 2447 (2706)
T KOG3533|consen 2415 VTRNGRSIVLTALLALILVYLFSILGFLFFKDD 2447 (2706)
T ss_pred HhcCCceeHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 345455556666666666668999999999754
No 141
>PRK10263 DNA translocase FtsK; Provisional
Probab=46.00 E-value=2.1e+02 Score=33.88 Aligned_cols=18 Identities=11% Similarity=0.183 Sum_probs=11.9
Q ss_pred HHHHhhhhHhHHHHHHHH
Q 013584 231 GQAAFGTAGRIAVSVILY 248 (440)
Q Consensus 231 ~~~~fG~~~~~l~~~~~~ 248 (440)
.+-.+|..|.++..+++.
T Consensus 60 V~Nl~GiVGA~LAD~L~~ 77 (1355)
T PRK10263 60 IHNLGGMPGAWLADTLFF 77 (1355)
T ss_pred cccccchHHHHHHHHHHH
Confidence 355677777777776554
No 142
>TIGR00930 2a30 K-Cl cotransporter.
Probab=45.82 E-value=5.3e+02 Score=29.75 Aligned_cols=119 Identities=10% Similarity=0.094 Sum_probs=65.2
Q ss_pred HHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCC-------------chHHHHHH
Q 013584 289 ALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCLFWVGLVDQVNIHSKGTPLNLA-------------TLPVAIGL 355 (440)
Q Consensus 289 ~ii~~liv~pl~~~r~l~~l~~~s~~~~i~~i~~ii~ii~~~~~~~~~~~~~~~~~~~~-------------~~~~a~~~ 355 (440)
.++.+++++.++.+ ++...++.+.+..+++++.++.++...+..-... ......++. ++....+.
T Consensus 204 ~iia~i~l~ll~~I-n~~Gvk~~ak~q~vl~vi~ll~ll~~iig~~~~~-~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~ 281 (953)
T TIGR00930 204 RIYGTVTVVVLLGI-SFAGMEWENKAQVLFLVIVLLSILNIFVGTIIPA-FDKPAKGFFGLGNEIFSENFIPGIPGPEGG 281 (953)
T ss_pred hHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHheeeecC-CCCCccceeeccchhhhhccCCCCCCcccH
Confidence 44555556666666 9999999999888888887877776554332111 111111111 11111111
Q ss_pred HHHHhh----cccchHHHHhhcc-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 013584 356 YGYCYS----GHAVFPNIYTSMA-QPNQFPKVLITCFLICTAMYAGVAYMGYTMFGESTL 410 (440)
Q Consensus 356 ~~faf~----g~~~i~~i~~emk-~p~k~~~ai~~a~~i~~~lY~~v~~~gy~~fG~~~~ 410 (440)
+...+. ...-+.. ...|. +-++=.|.+-.++++..++=.++-++..+.+|....
T Consensus 282 f~~~~ai~F~A~tGi~a-gan~sgElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~ 340 (953)
T TIGR00930 282 FFSLFGIFFPSVTGILA-GANISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVV 340 (953)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhccChhhhhHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 111111 1111111 22233 334467899999999888888888887777876554
No 143
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=45.10 E-value=3.7e+02 Score=27.81 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=37.3
Q ss_pred HHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcc
Q 013584 227 YPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFP 271 (440)
Q Consensus 227 y~~i~~~~fG~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~ 271 (440)
..++.+..+|+++..++.+...+..+++..+++...+..+..+-.
T Consensus 270 ~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amar 314 (473)
T TIGR00905 270 MAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAK 314 (473)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677888999999988888888889999998888888887766643
No 144
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.76 E-value=10 Score=40.65 Aligned_cols=7 Identities=43% Similarity=0.601 Sum_probs=3.0
Q ss_pred Hhhhccc
Q 013584 175 NVLCGVG 181 (440)
Q Consensus 175 ~~iIG~G 181 (440)
.+..|.|
T Consensus 590 a~AL~~g 596 (885)
T KOG2023|consen 590 ASALGVG 596 (885)
T ss_pred HHHHhcc
Confidence 3334444
No 145
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=42.88 E-value=17 Score=37.73 Aligned_cols=6 Identities=67% Similarity=0.750 Sum_probs=2.2
Q ss_pred eecCCc
Q 013584 11 YIESDE 16 (440)
Q Consensus 11 ~~~~~~ 16 (440)
.+.+||
T Consensus 95 s~~s~e 100 (641)
T KOG0772|consen 95 SINSDE 100 (641)
T ss_pred cccccc
Confidence 333333
No 146
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=42.74 E-value=15 Score=39.93 Aligned_cols=7 Identities=29% Similarity=0.263 Sum_probs=3.3
Q ss_pred HHHHHHH
Q 013584 393 MYAGVAY 399 (440)
Q Consensus 393 lY~~v~~ 399 (440)
.|+++|+
T Consensus 557 ~~lVvGv 563 (622)
T PF02724_consen 557 TYLVVGV 563 (622)
T ss_pred eEEEEEe
Confidence 4444444
No 147
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.70 E-value=14 Score=36.88 Aligned_cols=6 Identities=17% Similarity=0.506 Sum_probs=2.7
Q ss_pred CCCCcc
Q 013584 75 PSPSLT 80 (440)
Q Consensus 75 ~~p~~~ 80 (440)
+.|++.
T Consensus 357 ~lp~i~ 362 (514)
T KOG3130|consen 357 ELPTIR 362 (514)
T ss_pred cCCccC
Confidence 445443
No 148
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=42.33 E-value=15 Score=41.04 Aligned_cols=17 Identities=24% Similarity=0.143 Sum_probs=8.9
Q ss_pred HHHHHHHHhhHhhhccc
Q 013584 256 IEYIILESDNLSSLFPN 272 (440)
Q Consensus 256 v~y~i~~~~~l~~~~~~ 272 (440)
.-++..++|.+...++.
T Consensus 595 gq~i~~fgD~l~~eL~~ 611 (1233)
T KOG1824|consen 595 GQIIANFGDFLGNELPR 611 (1233)
T ss_pred HHHHHHHhhhhhhhhHH
Confidence 34455556666555543
No 149
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=39.92 E-value=5.7e+02 Score=28.49 Aligned_cols=9 Identities=33% Similarity=0.235 Sum_probs=4.3
Q ss_pred hHHHHHhhC
Q 013584 185 TPYAAKEGG 193 (440)
Q Consensus 185 lP~a~~~~G 193 (440)
+|....+.|
T Consensus 190 lp~i~~~~g 198 (742)
T TIGR01299 190 LPSAEKDLC 198 (742)
T ss_pred HHHHHHHhC
Confidence 455444444
No 150
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=39.52 E-value=9.8 Score=36.39 Aligned_cols=15 Identities=27% Similarity=0.543 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhh
Q 013584 314 GGVIASILVVLCLFW 328 (440)
Q Consensus 314 ~~~i~~i~~ii~ii~ 328 (440)
++.+|++++++++++
T Consensus 80 LGlLCiilimi~lLv 94 (381)
T PF05297_consen 80 LGLLCIILIMIVLLV 94 (381)
T ss_dssp ---------------
T ss_pred chHHHHHHHHHHHHH
Confidence 344454444444443
No 151
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=39.15 E-value=4.7e+02 Score=27.31 Aligned_cols=47 Identities=15% Similarity=0.143 Sum_probs=37.1
Q ss_pred CCHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcc
Q 013584 225 ETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFP 271 (440)
Q Consensus 225 ~sy~~i~~~~fG~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~ 271 (440)
+..+++|++-+.|+.+++.++..=+...++=+..++..+-.+.-++.
T Consensus 89 ~hLAe~Cr~~Ypk~~~~~Lwi~aEiAiI~sDiqEVIGTAiAlniL~~ 135 (503)
T KOG1291|consen 89 KHLAEICREEYPKWPRMVLWIMAEIAIIASDIQEVIGTAIALNILSN 135 (503)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhC
Confidence 47999999999999999988877677777777777777666666654
No 152
>PF08595 RXT2_N: RXT2-like, N-terminal; InterPro: IPR013904 The entry represents the N-terminal region of RXT2-like proteins. In Saccharomyces cerevisiae (Baker's yeast), RXT2 has been demonstrated to be involved in conjugation with cellular fusion (mating) and invasive growth []. A high throughput localisation study has localised RXT2 to the nucleus [].
Probab=38.66 E-value=14 Score=32.15 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=10.9
Q ss_pred cccCCCCCCcccCCCCcccccccc
Q 013584 70 LYSSVPSPSLTFLGTPSLSRLSSS 93 (440)
Q Consensus 70 ~~~~~~~p~~~~~~~~~~~r~~~s 93 (440)
+.+.+.+|+ .+.--|+++|..+|
T Consensus 93 iLaPlt~ps-dl~tHPaiS~~f~S 115 (149)
T PF08595_consen 93 ILAPLTHPS-DLPTHPAISRTFKS 115 (149)
T ss_pred HhcccCCHH-HhcCCccccccccc
Confidence 344445553 22334666665444
No 153
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.19 E-value=4.7e+02 Score=27.92 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 013584 196 GLLILVAFGVLSFYTGILLRRCL 218 (440)
Q Consensus 196 g~illi~~g~l~~~t~~lL~~~~ 218 (440)
.+++.+++|+++-|.+.-|.+..
T Consensus 368 ~~~l~v~~G~~agY~s~rlyk~~ 390 (628)
T KOG1278|consen 368 MVLLFVFMGFVAGYVSARLYKTF 390 (628)
T ss_pred HHHHHHHHHHhhhhhhhhhHhhh
Confidence 55566789999988888777776
No 154
>PRK10369 heme lyase subunit NrfE; Provisional
Probab=37.83 E-value=5.5e+02 Score=27.65 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=19.9
Q ss_pred hccccchhHHHHHhhCHHHHHHHHHHHHHHHHH
Q 013584 178 CGVGILSTPYAAKEGGWFGLLILVAFGVLSFYT 210 (440)
Q Consensus 178 IG~GiLslP~a~~~~G~~g~illi~~g~l~~~t 210 (440)
+-+|++...++|...+.-|..++++.+++...+
T Consensus 295 ~rsGvl~svHsFa~~~~~g~~ll~~l~~~~~~~ 327 (571)
T PRK10369 295 VRSGILVSVHAFALDNVRAVPLFSLFALLSLAS 327 (571)
T ss_pred hccCCCccceeeccCCCccHHHHHHHHHHHHHH
Confidence 556777777788755544665555554444333
No 155
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=37.09 E-value=1.8e+02 Score=25.96 Aligned_cols=59 Identities=22% Similarity=0.336 Sum_probs=33.3
Q ss_pred hhccccchhHHHHHh--hCHHHH-HHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhhHhHHHHHHHH
Q 013584 177 LCGVGILSTPYAAKE--GGWFGL-LILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIAVSVILY 248 (440)
Q Consensus 177 iIG~GiLslP~a~~~--~G~~g~-illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~~~l~~~~~~ 248 (440)
-+|.+.|..|++... -+|+|. +.++++++++..++.+...+ .++.-|.+.+.+..+..+
T Consensus 48 ~v~P~~ll~Pf~~g~wk~t~~G~~igi~~~gv~Si~aAllY~~~-------------l~k~~g~W~Gi~YG~~~W 109 (173)
T PF11085_consen 48 EVGPNFLLEPFALGDWKNTWLGNLIGIVFIGVFSIVAALLYYAL-------------LKKFKGPWPGILYGLAWW 109 (173)
T ss_pred ccccChhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHhcccchHHHHHHHHH
Confidence 468899999988542 344433 33345555665555554444 344555566655554443
No 156
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=36.39 E-value=4.9e+02 Score=26.65 Aligned_cols=38 Identities=13% Similarity=0.030 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHH
Q 013584 193 GWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDI 230 (440)
Q Consensus 193 G~~g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i 230 (440)
+++++++..++.++..++...|....+..++...|..-
T Consensus 47 ~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~ 84 (452)
T TIGR01773 47 ALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADD 84 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 34455555555566777888888887777776666543
No 157
>KOG3761 consensus Choline transporter [Lipid transport and metabolism]
Probab=36.10 E-value=8.5 Score=37.70 Aligned_cols=150 Identities=14% Similarity=0.166 Sum_probs=79.1
Q ss_pred CCCCCHHHHHHHHHHhhhccc-cchhHHHHHhhCH-H-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhh
Q 013584 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGW-F-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGT 237 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~G-iLslP~a~~~~G~-~-g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~ 237 (440)
.|+++..-..|....+-+|.| |=.+.-++.+.|+ + |.-.=+-.++--...+.+..+-+ |..|..+.-|=.+..+|+
T Consensus 49 grdig~lvg~ftmtatwvgg~yingtaealy~~gygl~~~qapigyaislilggl~fak~m-r~egyitmldpfq~~ygk 127 (591)
T KOG3761|consen 49 GRDIGLLVGGFTMTATWVGGAYINGTAEALYNGGYGLAGAQAPIGYAISLILGGLFFAKKM-REEGYITMLDPFQHIYGK 127 (591)
T ss_pred cccceeeeeeEEEEEEEecceeeccchhhhccCCcccccccCcchhhHHHHhhhhhhcchh-hhcCcEEeechHHHHhhh
Confidence 677777777777777778777 4566777777653 1 21111111111122333444444 455656777778888888
Q ss_pred hHhHHHHH-HHHHHHHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhHHHHHHHHH
Q 013584 238 AGRIAVSV-ILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGV 316 (440)
Q Consensus 238 ~~~~l~~~-~~~~~~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l~~~s~~~~ 316 (440)
+.+-+.-+ .+.-+.+-... -+...+-.++-++.. . ...-+++.+++....++...+..+.+.-.+.+
T Consensus 128 riggll~ipallge~fwaaa-i~salgatisvii~i-d----------m~~sv~isa~ia~~yt~~gg~yavaytdvvql 195 (591)
T KOG3761|consen 128 RIGGLLFIPALLGEMFWAAA-IFSALGATISVIIDI-D----------MHASVIISACIATFYTFTGGLYAVAYTDVVQL 195 (591)
T ss_pred hccceEeeHHHHhHHHHHHH-HHHHhcCeEEEEEec-c----------ccHhHHHHHHHHHHHhhccceEEEeehhHHHH
Confidence 76543332 22223332222 222333333333211 1 12333444555555566678888888887777
Q ss_pred HHHHHHH
Q 013584 317 IASILVV 323 (440)
Q Consensus 317 i~~i~~i 323 (440)
+|+++-+
T Consensus 196 fcifvgl 202 (591)
T KOG3761|consen 196 FCIFVGL 202 (591)
T ss_pred HHHHhhh
Confidence 7766444
No 158
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=36.09 E-value=29 Score=36.14 Aligned_cols=10 Identities=30% Similarity=0.165 Sum_probs=3.7
Q ss_pred CCCCHHHHHH
Q 013584 162 RQSSYAQALL 171 (440)
Q Consensus 162 ~~~s~~~~~~ 171 (440)
|-.|.+-.++
T Consensus 538 ra~sa~m~w~ 547 (615)
T KOG0526|consen 538 RATSAYMLWL 547 (615)
T ss_pred cchhHHHHHH
Confidence 3334333333
No 159
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=36.02 E-value=24 Score=38.52 Aligned_cols=12 Identities=17% Similarity=0.224 Sum_probs=4.6
Q ss_pred CCCCCcceeecC
Q 013584 3 NSVSDHSFYIES 14 (440)
Q Consensus 3 ~~~~~~~~~~~~ 14 (440)
+.++|-.-..++
T Consensus 871 d~~~D~d~~~de 882 (988)
T KOG2038|consen 871 DMTSDDDVDADE 882 (988)
T ss_pred cccccccccccc
Confidence 344443333333
No 160
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=35.76 E-value=2.3e+02 Score=28.23 Aligned_cols=44 Identities=14% Similarity=0.187 Sum_probs=32.0
Q ss_pred HHHHHHHhh-hhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcc
Q 013584 228 PDIGQAAFG-TAGRIAVSVILYAELYACCIEYIILESDNLSSLFP 271 (440)
Q Consensus 228 ~~i~~~~fG-~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~ 271 (440)
.+..+..+| +++++++.+..+...+.+++.-....+..+..++.
T Consensus 242 ~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~~ 286 (358)
T PF01566_consen 242 AQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFLG 286 (358)
T ss_pred HHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhhc
Confidence 344567889 89999998888888777777666666666666663
No 161
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=35.16 E-value=26 Score=36.06 Aligned_cols=17 Identities=18% Similarity=0.413 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013584 383 LITCFLICTAMYAGVAY 399 (440)
Q Consensus 383 i~~a~~i~~~lY~~v~~ 399 (440)
+..++.+.+++-+.+.+
T Consensus 554 lv~~~~i~tvivisl~m 570 (615)
T KOG3540|consen 554 LVSAVFIATVIVISLVM 570 (615)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444433333
No 162
>PRK15049 L-asparagine permease; Provisional
Probab=34.96 E-value=5.5e+02 Score=26.87 Aligned_cols=46 Identities=4% Similarity=-0.094 Sum_probs=35.0
Q ss_pred CCHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhc
Q 013584 225 ETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLF 270 (440)
Q Consensus 225 ~sy~~i~~~~fG~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~ 270 (440)
..+.++...+.++.+..++.+...+..+++..+.+...+..+..+-
T Consensus 289 sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~A 334 (499)
T PRK15049 289 SPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMA 334 (499)
T ss_pred CHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777778888888888888888888888777777777765554
No 163
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=34.94 E-value=5.1e+02 Score=26.46 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=31.4
Q ss_pred CCHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q 013584 225 ETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSL 269 (440)
Q Consensus 225 ~sy~~i~~~~fG~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~ 269 (440)
..+.++.+..+|+++..++.+...+..+++...++...+..+..+
T Consensus 260 ~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ 304 (445)
T PRK10644 260 SPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAA 304 (445)
T ss_pred ChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788889999988887777766767666665655555554443
No 164
>PHA02898 virion envelope protein; Provisional
Probab=34.57 E-value=1.4e+02 Score=23.40 Aligned_cols=63 Identities=11% Similarity=0.031 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhcccchHHHHhhccCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh
Q 013584 350 PVAIGLYGYCYSGHAVFPNIYTSMAQPN-QFPKVLITCFLICTAMYAGVAYMGYTMFGESTLSQFT 414 (440)
Q Consensus 350 ~~a~~~~~faf~g~~~i~~i~~emk~p~-k~~~ai~~a~~i~~~lY~~v~~~gy~~fG~~~~~~il 414 (440)
....|++..+-.|...+..+.+.-+ |. +..|++.+. .++.-+-+++|++-|.+||....++..
T Consensus 14 vli~GIiLL~~ACIfAfidfSK~~~-~~~~~wRalSii-~FIlgivl~lG~~ifs~y~r~C~~~~~ 77 (92)
T PHA02898 14 VVAFGIILLIVACICAYIELSKSEK-PADSALRSISII-SFILAIILILGIIFFKGYNMFCGGNTT 77 (92)
T ss_pred HHHHHHHHHHHHHHHheehhhcCCC-cchhHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhcCCCcc
Confidence 3445555555555544455544433 53 455555432 333445567888999999976665544
No 165
>TIGR03145 cyt_nit_nrfE cytochrome c nitrate reductase biogenesis protein NrfE. Members of this protein family closely resemble the CcmF protein of the CcmABCDEFGH system, or system I, for c-type cytochrome biogenesis (GenProp0678). Members are found, as a rule, next to closely related paralogs of CcmG and CcmH and always located near other genes associated with the cytochrome c nitrite reductase enzyme complex. As a rule, members are found in species that also encode bona fide members of the CcmF, CcmG, and CcmH families.
Probab=34.37 E-value=6.5e+02 Score=27.48 Aligned_cols=41 Identities=24% Similarity=0.226 Sum_probs=23.8
Q ss_pred HHHHHHhhhcc-----ccchhHHHHHhhCHHHHHHHHHHHHHHHHH
Q 013584 170 LLNGMNVLCGV-----GILSTPYAAKEGGWFGLLILVAFGVLSFYT 210 (440)
Q Consensus 170 ~~~ii~~iIG~-----GiLslP~a~~~~G~~g~illi~~g~l~~~t 210 (440)
+....-++.|+ |++...++|..-+..|..++++.+++...+
T Consensus 280 ~~~~~~~~~gtflvRsg~l~svHsfa~d~~~G~~lL~~l~~~~~~~ 325 (628)
T TIGR03145 280 LFAFSLSLLGTFIVRSGVLTSVHAFAVDPTRGIALLLLFFLLTASA 325 (628)
T ss_pred HHHHHHHHHHHHhhhccCcCCccccccCCCchHHHHHHHHHHHHHH
Confidence 33344466785 888888888765444555554444444333
No 166
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=33.52 E-value=18 Score=29.32 Aligned_cols=11 Identities=18% Similarity=0.268 Sum_probs=7.0
Q ss_pred hccccchhHHH
Q 013584 178 CGVGILSTPYA 188 (440)
Q Consensus 178 IG~GiLslP~a 188 (440)
||.|+|.++..
T Consensus 9 Iglgv~~~Gg~ 19 (104)
T PF11460_consen 9 IGLGVFLLGGL 19 (104)
T ss_pred ecHHHHHHHHH
Confidence 66777766643
No 167
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=33.23 E-value=27 Score=41.50 Aligned_cols=18 Identities=17% Similarity=0.519 Sum_probs=10.5
Q ss_pred hhcccchHHHHhhccCCC
Q 013584 360 YSGHAVFPNIYTSMAQPN 377 (440)
Q Consensus 360 f~g~~~i~~i~~emk~p~ 377 (440)
|...+++|-...|-++++
T Consensus 641 ~~niem~p~~lke~~~~k 658 (2849)
T PTZ00415 641 YANIEIFPKMLKDEKKKK 658 (2849)
T ss_pred ccChhccchhhhhhhhcc
Confidence 345667777766644443
No 168
>PRK11387 S-methylmethionine transporter; Provisional
Probab=33.18 E-value=5.6e+02 Score=26.43 Aligned_cols=46 Identities=7% Similarity=-0.060 Sum_probs=35.8
Q ss_pred CCHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhc
Q 013584 225 ETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLF 270 (440)
Q Consensus 225 ~sy~~i~~~~fG~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~ 270 (440)
..+.++.+...|+++..++.+...+..+++..+.+...+..+..+-
T Consensus 275 ~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~a 320 (471)
T PRK11387 275 SPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYASGRMLWSLS 320 (471)
T ss_pred ChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4677888888888888888888888888888877777777665554
No 169
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=32.46 E-value=2.6e+02 Score=23.05 Aligned_cols=65 Identities=20% Similarity=0.108 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHhhhccccchhHHHHHhhCHH-HH-HHHHHHHHHHHHHHHHHHHhhhcCCCCCCH
Q 013584 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GL-LILVAFGVLSFYTGILLRRCLDSEPGLETY 227 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~GiLslP~a~~~~G~~-g~-illi~~g~l~~~t~~lL~~~~~~~~~~~sy 227 (440)
-|..|.-+......-+....=++++|.+.--.+|+ +- ..++.+.+..+++...|.+...-+|. +|
T Consensus 15 ~rGlT~~El~~~~~~~~~~gl~~g~~l~~~~~~w~~~p~~~lig~~l~v~~gg~~l~rlKRGrPe--~y 81 (111)
T TIGR03750 15 FRGLTADELGVAAGVGLAAGLVLGLLLALLAGPWALIPTGALLGPILVVLIGGKLLARLKRGKPE--GY 81 (111)
T ss_pred ecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCc--hH
Confidence 57777777665544443333367788776666786 33 33344444556777888887644444 55
No 170
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=31.85 E-value=4.6e+02 Score=26.96 Aligned_cols=37 Identities=16% Similarity=0.307 Sum_probs=32.6
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhc
Q 013584 234 AFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLF 270 (440)
Q Consensus 234 ~fG~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~ 270 (440)
.+|.++.+++.+++.+..+.+.+.+....-..+.+++
T Consensus 302 ~~g~~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 302 VLGSWGPYFVAIALFLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4567888999999999999999999999989999988
No 171
>TIGR01654 bact_immun_7tm bacteriocin-associated integral membrane (putative immunity) protein. This model represents a family of integral membrane proteins, most of which are about 650 residues in size and predicted to span the membrane seven times. Nearly half of the members of this family are found in association with a member of the lactococcin 972 family of bacteriocins (TIGR01653). Others may be associated with uncharacterized proteins that may also act as bacteriocins. Although this protein is suggested to be an immunity protein, and the bacteriocin is suggested to be exported by a Sec-dependent process, the role of this protein is unclear.
Probab=31.54 E-value=7.1e+02 Score=27.37 Aligned_cols=33 Identities=15% Similarity=0.042 Sum_probs=15.4
Q ss_pred HHHHHHHHHhhhcCCCCCCHHHHHHHHhhhhHh
Q 013584 208 FYTGILLRRCLDSEPGLETYPDIGQAAFGTAGR 240 (440)
Q Consensus 208 ~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~~ 240 (440)
.+...-+.+..-++-...+-.++..+.+.+...
T Consensus 186 ~~~~~~~K~~gI~rL~G~s~~~I~~~~l~~~~~ 218 (679)
T TIGR01654 186 YYLMINMKRVAIYRLNGFSLRKILFRLFSKNCT 218 (679)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 344444444443332223555666666655444
No 172
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=31.33 E-value=5.1e+02 Score=28.04 Aligned_cols=60 Identities=15% Similarity=0.079 Sum_probs=33.9
Q ss_pred ccccchhHHHHH--hhCHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhhhHh
Q 013584 179 GVGILSTPYAAK--EGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGR 240 (440)
Q Consensus 179 G~GiLslP~a~~--~~G~~-g~illi~~g~l~~~t~~lL~~~~~~~~~~~sy~~i~~~~fG~~~~ 240 (440)
..+++.+...+. +..+. .++.+++..+++...+++.+++-. .....+.-+.+.++|-...
T Consensus 368 v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~--~P~~~~~~~sqli~g~~~p 430 (624)
T PF03169_consen 368 VLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGI--NPVSGLNILSQLIFGLLLP 430 (624)
T ss_pred HHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCC--CcchhhhHHHHHHHHHHHh
Confidence 334555566663 34444 444445666666777777777652 2234566677777765444
No 173
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=30.84 E-value=4.2e+02 Score=28.07 Aligned_cols=52 Identities=12% Similarity=0.248 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhcCCCCchHHHHHHHHHHHHHhhc
Q 013584 382 VLITCFLICTAMYAGVAYMGYTMFGESTLSQFTLNMPQDLVATKIAVWTTILRAVM 437 (440)
Q Consensus 382 ai~~a~~i~~~lY~~v~~~gy~~fG~~~~~~il~nlp~~~~~~~ia~~~~vi~~~t 437 (440)
++..+.++..++++++.++-......... ..+|-..+...++.|..+-.|++
T Consensus 333 ~~lt~~~~P~~~~~~~~~~n~i~~~~~ss----~aipf~t~~~l~~lw~~v~~PL~ 384 (521)
T PF02990_consen 333 SILTSLLFPGILFSIFFILNFIAWSYGSS----SAIPFGTILFLIALWFFVSIPLT 384 (521)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccc----cccchHHHHHHHHHHHHHhhhhh
Confidence 44445555555555555444444433321 12233445555555555555554
No 174
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=30.65 E-value=6.2e+02 Score=26.15 Aligned_cols=46 Identities=13% Similarity=0.102 Sum_probs=28.9
Q ss_pred CHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcc
Q 013584 226 TYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFP 271 (440)
Q Consensus 226 sy~~i~~~~fG~~~~~l~~~~~~~~~~~~~v~y~i~~~~~l~~~~~ 271 (440)
..+.+....+|..+..++.+...+..+++..+.+...+..+..+-.
T Consensus 284 ~~p~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~sR~~~a~Ar 329 (475)
T TIGR03428 284 GLPYVLSAVLDSPWGTVLLVDVAIAILVCTLAIQTAGSRLMFSMAR 329 (475)
T ss_pred chHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666677765555555555666777777777777776665543
No 175
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=30.55 E-value=1.6e+02 Score=22.81 Aligned_cols=39 Identities=13% Similarity=0.186 Sum_probs=25.4
Q ss_pred HHHhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013584 368 NIYTSMAQPNQFPKVLITCFLICTAMYAGVAYMGYTMFG 406 (440)
Q Consensus 368 ~i~~emk~p~k~~~ai~~a~~i~~~lY~~v~~~gy~~fG 406 (440)
.+-.++++..+-++.++++.+..++.-++.+.+||.+|.
T Consensus 41 ~~d~~i~kK~k~kK~iiiS~i~s~lalli~~~~G~g~y~ 79 (84)
T PF09716_consen 41 KIDDKIEKKKKNKKKIIISTIASGLALLIATALGYGYYK 79 (84)
T ss_pred hhhHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 444566666455566666666666655777778888875
No 176
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=30.53 E-value=6e+02 Score=25.91 Aligned_cols=32 Identities=9% Similarity=0.093 Sum_probs=18.8
Q ss_pred CCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCC
Q 013584 343 PLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ 378 (440)
Q Consensus 343 ~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k 378 (440)
..++..+..++-...-.-.|..... ++..+.+
T Consensus 361 ~~~f~s~~~s~~tl~~~l~g~~~~~----~~~~~~~ 392 (425)
T PF08016_consen 361 SEDFSSFSSSLVTLFRMLLGDFDYD----ELYQANP 392 (425)
T ss_pred ccccCCHHHHHHHHHHHhcCCCchh----hhhcccc
Confidence 3456777777776655555554333 6655555
No 177
>PF10329 DUF2417: Region of unknown function (DUF2417); InterPro: IPR019431 This entry represents a family of fungal proteins with no known function. In some cases these proteins also contain an alpha/beta hydrolase fold (IPR000073 from INTERPRO).
Probab=30.27 E-value=4.7e+02 Score=24.59 Aligned_cols=47 Identities=26% Similarity=0.372 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHHhhhccccchhHHHHHhhCHHHHHHHHHHHHHHHHHH
Q 013584 162 RQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSFYTG 211 (440)
Q Consensus 162 ~~~s~~~~~~~ii~~iIG~GiLslP~a~~~~G~~g~illi~~g~l~~~t~ 211 (440)
+-.+..-+.+.+++.++ +++.|+.=.+-||+|++..+-+++.+.++.
T Consensus 102 r~l~~vl~~Lllvdlil---il~V~~~R~~eG~vGi~s~iWa~l~~l~~~ 148 (232)
T PF10329_consen 102 RILNIVLAGLLLVDLIL---ILAVPYTRHEEGWVGIASVIWAFLSSLWGI 148 (232)
T ss_pred HHHHHHHHHHHHHHHHH---HHhhHhHHhHhhHhhHHHHHHHHHHHHHHH
Confidence 33455555555555554 456788778889998887765555554444
No 178
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=29.66 E-value=31 Score=41.07 Aligned_cols=10 Identities=40% Similarity=0.923 Sum_probs=4.5
Q ss_pred ceeecCCchh
Q 013584 9 SFYIESDEEE 18 (440)
Q Consensus 9 ~~~~~~~~~~ 18 (440)
+|.||+||||
T Consensus 150 ~~~~d~~~~~ 159 (2849)
T PTZ00415 150 NFVIDDDDED 159 (2849)
T ss_pred ccccCCcccc
Confidence 3445544433
No 179
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=29.02 E-value=41 Score=36.46 Aligned_cols=7 Identities=29% Similarity=0.301 Sum_probs=3.0
Q ss_pred hhHhhhc
Q 013584 264 DNLSSLF 270 (440)
Q Consensus 264 ~~l~~~~ 270 (440)
+++..+.
T Consensus 447 diI~kl~ 453 (822)
T KOG2141|consen 447 DIIRKLA 453 (822)
T ss_pred HHHHHHH
Confidence 4444443
No 180
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=28.19 E-value=2e+02 Score=22.70 Aligned_cols=58 Identities=10% Similarity=0.103 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhcccchHHHHhhccCCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 013584 350 PVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLITCFLICTAMYAGVAYMGYTMFGEST 409 (440)
Q Consensus 350 ~~a~~~~~faf~g~~~i~~i~~emk~p~k-~~~ai~~a~~i~~~lY~~v~~~gy~~fG~~~ 409 (440)
....|++..+..|...+..+.+.-+ |.+ ..|++.+. .+++-+-+++|++-|.+||...
T Consensus 14 vli~GiiLL~~aCIfAfidfsK~~~-~~~~~wRalSii-~FI~giil~lG~~i~s~ygr~C 72 (92)
T PF05767_consen 14 VLIGGIILLIAACIFAFIDFSKNTK-PTDYTWRALSII-CFILGIILTLGIVIFSMYGRYC 72 (92)
T ss_pred HHHHHHHHHHHHHHHHhhhhccCCC-CchhHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhc
Confidence 3445556666666555555555443 444 55555433 3334455678888899998765
No 181
>PF04148 Erv26: Transmembrane adaptor Erv26; InterPro: IPR007277 Erv26 is an integral membrane protein that is packed into COPII vesicles and cycles between the ER and Golgi compartments. It directs pro-alkaline phosphatase into endoplasmic reticulum-derived COPII transport vesicles [].
Probab=27.86 E-value=4.9e+02 Score=24.07 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=27.7
Q ss_pred hhCHHHHHHHHHHHHHHHHHH-HHHHHhhhcCCCCCCHHHHHHHHhhhhHh
Q 013584 191 EGGWFGLLILVAFGVLSFYTG-ILLRRCLDSEPGLETYPDIGQAAFGTAGR 240 (440)
Q Consensus 191 ~~G~~g~illi~~g~l~~~t~-~lL~~~~~~~~~~~sy~~i~~~~fG~~~~ 240 (440)
..+|+|+++.+++..++..++ +.+.|..+ .|...++++..+...
T Consensus 6 lls~~g~~~~~~f~tlsiAsGLyYlsElVE------Eht~~akril~~~I~ 50 (211)
T PF04148_consen 6 LLSYLGTVLGFVFLTLSIASGLYYLSELVE------EHTVLAKRILKRLIY 50 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHH
Confidence 346667766666666666666 45677775 466677776654443
No 182
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=27.58 E-value=2.6e+02 Score=24.71 Aligned_cols=48 Identities=19% Similarity=0.294 Sum_probs=31.3
Q ss_pred HhhcccchHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013584 359 CYSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAGVAYMGYTMFGE 407 (440)
Q Consensus 359 af~g~~~i~~i~~emk~p~k~~~ai~~a~~i~~~lY~~v~~~gy~~fG~ 407 (440)
+|.+....+..++.+|+|+=.|-.-.+. ++=+++|+++|+.+|.++-.
T Consensus 23 s~~~~~~~~~wy~~L~kP~w~pp~~~f~-~vWtvLy~l~~iSa~lvW~~ 70 (161)
T COG3476 23 SFFISSRDPNWYNNLKKPFWLPPEWAFP-PVWTVLYALIGISAYLVWEK 70 (161)
T ss_pred HHHhccccHHHHHhccCCCCCChHHHhh-HHHHHHHHHHHHHHHHHHHH
Confidence 4455666677888888887533333322 23467888888888888843
No 183
>KOG4363 consensus Putative growth response protein [Signal transduction mechanisms]
Probab=27.20 E-value=38 Score=31.86 Aligned_cols=13 Identities=15% Similarity=-0.005 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHhh
Q 013584 206 LSFYTGILLRRCL 218 (440)
Q Consensus 206 l~~~t~~lL~~~~ 218 (440)
...++-.++.+..
T Consensus 221 ~p~vtknlV~ntv 233 (270)
T KOG4363|consen 221 APQVTKNLVYNTV 233 (270)
T ss_pred HHHHHHHHHhhcc
Confidence 3344444444443
No 184
>PLN02810 carbon-monoxide oxygenase
Probab=25.43 E-value=5.7e+02 Score=24.00 Aligned_cols=86 Identities=12% Similarity=0.016 Sum_probs=47.1
Q ss_pred CCCCCCchHHHHHHHHHHhhcccchHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhcCCCCch
Q 013584 342 TPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAGVAYMGYTMFGESTLSQFTLNMPQDL 421 (440)
Q Consensus 342 ~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~k~~~ai~~a~~i~~~lY~~v~~~gy~~fG~~~~~~il~nlp~~~ 421 (440)
..+||-.+...+|.+... |...+ +++..+.+++.+|.+-...-...++..++|+.....|-+.. .+-+-+.-+.
T Consensus 45 ~~FN~HPvlMv~Gfi~l~--geAIL--~Yr~~~~~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~--~i~nlySLHS 118 (231)
T PLN02810 45 LIFNLHPVLMLIGLIIIG--GEAIM--SYKSLPLKKEVKKLIHLVLHAIALILGIFGICAAFKNHNES--GIANLYSLHS 118 (231)
T ss_pred ceeeehHHHHHHHHHHHh--hHHHH--HhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CCCceeeHHH
Confidence 367777666655533221 12111 22444445567888888888888888888886666664432 2322223334
Q ss_pred HHHHHHHHHHHH
Q 013584 422 VATKIAVWTTIL 433 (440)
Q Consensus 422 ~~~~ia~~~~vi 433 (440)
.....++.+..+
T Consensus 119 WlGl~tv~Lf~l 130 (231)
T PLN02810 119 WLGIGIISLYGI 130 (231)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 185
>KOG2897 consensus DNA-binding protein YL1 and related proteins [General function prediction only]
Probab=25.28 E-value=51 Score=32.89 Aligned_cols=16 Identities=31% Similarity=0.497 Sum_probs=6.4
Q ss_pred HhhhhcccchhHHHHH
Q 013584 297 LPTCWLRDLTVLSYIS 312 (440)
Q Consensus 297 ~pl~~~r~l~~l~~~s 312 (440)
.|....-.+..+-|..
T Consensus 301 ~PA~Y~DPVT~lPy~t 316 (390)
T KOG2897|consen 301 RPARYLDPVTGLPYST 316 (390)
T ss_pred CcccccCcccCCcchh
Confidence 3433333444444433
No 186
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=25.15 E-value=1.9e+02 Score=22.50 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHHHHhhhccccchhH
Q 013584 161 SRQSSYAQALLNGMNVLCGVGILSTP 186 (440)
Q Consensus 161 ~~~~s~~~~~~~ii~~iIG~GiLslP 186 (440)
-.+.|+.|.++.+.+..+|.|+..+-
T Consensus 14 ~~GlT~RQl~~l~~~~~~~~~~~~~~ 39 (93)
T PF12666_consen 14 FFGLTLRQLICLAIGALVGVGVYLLL 39 (93)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999998865543
No 187
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=24.10 E-value=1.1e+02 Score=19.67 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=14.8
Q ss_pred hhCHH--HHHHHHHHHHHHHHHH
Q 013584 191 EGGWF--GLLILVAFGVLSFYTG 211 (440)
Q Consensus 191 ~~G~~--g~illi~~g~l~~~t~ 211 (440)
+-||+ |+..++++.++..|+.
T Consensus 13 Er~Wi~F~l~mi~vFi~li~ytl 35 (38)
T PF09125_consen 13 ERGWIAFALAMILVFIALIGYTL 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 45885 7777777777777764
No 188
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=23.68 E-value=4.5e+02 Score=25.89 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=13.5
Q ss_pred HHHHHHHHhhhccccchhHHHHHhhCH
Q 013584 168 QALLNGMNVLCGVGILSTPYAAKEGGW 194 (440)
Q Consensus 168 ~~~~~ii~~iIG~GiLslP~a~~~~G~ 194 (440)
+.++.+++..+ |+...|--+...||
T Consensus 7 ~l~~~i~g~~l--G~~~~p~ll~~~~~ 31 (356)
T COG4956 7 ILLFIIIGAVL--GFAVIPELLADLGI 31 (356)
T ss_pred HHHHHHHHhhh--hHhhHHHHHhhcCc
Confidence 34444444333 45677766666554
No 189
>PLN00150 potassium ion transporter family protein; Provisional
Probab=23.47 E-value=1.1e+03 Score=26.51 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=19.2
Q ss_pred HHHHHHHHhhhhcccchhHHHHHHHHHHHHH
Q 013584 290 LMTTLAVLPTCWLRDLTVLSYISAGGVIASI 320 (440)
Q Consensus 290 ii~~liv~pl~~~r~l~~l~~~s~~~~i~~i 320 (440)
++..+++.....+|+-..++-+-.+++..+.
T Consensus 417 ~Lmv~~i~vv~~F~~s~~l~~AYGiAV~~vM 447 (779)
T PLN00150 417 ILMVLCLVITAGFRDTDEIGNAYGIAVVGVM 447 (779)
T ss_pred HHHHHHHhheEEecChHHHHHHhhhheehhh
Confidence 3444455556667888888866666654433
No 190
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=23.42 E-value=45 Score=36.09 Aligned_cols=7 Identities=71% Similarity=1.104 Sum_probs=3.2
Q ss_pred ecCCchh
Q 013584 12 IESDEEE 18 (440)
Q Consensus 12 ~~~~~~~ 18 (440)
+|||||+
T Consensus 17 ~dsDee~ 23 (971)
T KOG0468|consen 17 LDSDEEE 23 (971)
T ss_pred cCCcccc
Confidence 3454443
No 191
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=23.42 E-value=41 Score=36.08 Aligned_cols=13 Identities=46% Similarity=0.747 Sum_probs=6.8
Q ss_pred eeecCCchhhHhh
Q 013584 10 FYIESDEEEDEEK 22 (440)
Q Consensus 10 ~~~~~~~~~~~~~ 22 (440)
+.+|||||=+||+
T Consensus 519 YEVdSDeEWEEEe 531 (811)
T KOG4364|consen 519 YEVDSDEEWEEEE 531 (811)
T ss_pred ccccCcccccccC
Confidence 4456766544443
No 192
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.35 E-value=60 Score=28.86 Aligned_cols=7 Identities=14% Similarity=0.477 Sum_probs=2.6
Q ss_pred CCCCCCc
Q 013584 38 GNDSDSS 44 (440)
Q Consensus 38 ~~~~~~~ 44 (440)
++|++|+
T Consensus 200 d~D~eD~ 206 (227)
T KOG3241|consen 200 DSDEEDN 206 (227)
T ss_pred ccccccc
Confidence 3333333
No 193
>KOG4553 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.08 E-value=46 Score=37.68 Aligned_cols=13 Identities=15% Similarity=0.161 Sum_probs=8.7
Q ss_pred CCCCcceeecCCc
Q 013584 4 SVSDHSFYIESDE 16 (440)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (440)
.-.-|.|+|.+|.
T Consensus 1303 lsT~RDFkIk~~~ 1315 (1398)
T KOG4553|consen 1303 LSTYRDFKIKMEV 1315 (1398)
T ss_pred hccccccccchhc
Confidence 3455778888765
No 194
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=22.57 E-value=1e+03 Score=25.85 Aligned_cols=48 Identities=15% Similarity=0.256 Sum_probs=30.8
Q ss_pred HHHhhcccchHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013584 357 GYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAGVAYMGYTMFGE 407 (440)
Q Consensus 357 ~faf~g~~~i~~i~~emk~p~k~~~ai~~a~~i~~~lY~~v~~~gy~~fG~ 407 (440)
.+++++......+...+--|. .-+..+..+...+-.+-|.+||..|..
T Consensus 416 g~giG~~~~~~~~~~ql~~p~---~~ig~a~gL~~s~R~~GGsIg~aIy~~ 463 (599)
T PF06609_consen 416 GFGIGGILVPAIVIAQLIVPD---EDIGTATGLTGSIRSIGGSIGYAIYNA 463 (599)
T ss_pred HHhHHHHHHHHHHeeEeeeCc---hHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 334444444445555555554 346667777778888888899998864
No 195
>PRK13875 conjugal transfer protein TrbL; Provisional
Probab=22.26 E-value=6.2e+02 Score=26.15 Aligned_cols=44 Identities=11% Similarity=0.265 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhhHhhhccccccCcCccccchhHHHHHHHHHHHHhhhhcccchhH
Q 013584 251 LYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVL 308 (440)
Q Consensus 251 ~~~~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~liv~pl~~~r~l~~l 308 (440)
.....++|.++..+.+..++. .++.....++++|+...|.-+.+
T Consensus 149 ~liVLLaF~iIAvqmfvtLIE--------------fyl~tlAG~iLLpFGg~~wTsf~ 192 (440)
T PRK13875 149 WLLVLLAFFILAIQLFVTLIE--------------FKLTTLAGFVLIPFALFGKTAFL 192 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHhhHHHhhccccchhhHHH
Confidence 334444555555555555542 24455677788898877755555
No 196
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=21.65 E-value=31 Score=37.96 Aligned_cols=43 Identities=16% Similarity=0.449 Sum_probs=0.0
Q ss_pred cCCchhhHhhhhccCCCCCcccCCCCCCCCCccccccCCCCCC
Q 013584 13 ESDEEEDEEKVFDVNGGEEDQEENDGNDSDSSAENQQQTHPGS 55 (440)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (440)
++||++++++..+..++|+|+++++++++++.+....+...+.
T Consensus 451 eEeEe~edeeeeEEeedddEEEEeede~D~deeedve~~~e~~ 493 (713)
T PF03344_consen 451 EEEEEDEDEEEEEEEEDDDEEEEEEDEEDEDEEEDVEGSQEDD 493 (713)
T ss_dssp -------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc
No 197
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.52 E-value=1e+02 Score=30.57 Aligned_cols=8 Identities=25% Similarity=0.360 Sum_probs=3.2
Q ss_pred HHhhhccc
Q 013584 174 MNVLCGVG 181 (440)
Q Consensus 174 i~~iIG~G 181 (440)
++...+-|
T Consensus 131 ~~~l~~e~ 138 (372)
T KOG2927|consen 131 VKALLKEG 138 (372)
T ss_pred HHHhhccc
Confidence 33334444
No 198
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=21.17 E-value=4.1e+02 Score=20.84 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=12.7
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHH
Q 013584 210 TGILLRRCLDSEPGLETYPDIGQA 233 (440)
Q Consensus 210 t~~lL~~~~~~~~~~~sy~~i~~~ 233 (440)
+..++..-.+-+.++.++.+++..
T Consensus 43 a~~~i~~y~eir~gK~~W~~fg~~ 66 (87)
T PF11190_consen 43 AKAAISTYNEIRDGKKTWGDFGAT 66 (87)
T ss_pred HHHHHHHHHHHHcCcccHHHhhhH
Confidence 334444444445566677666554
No 199
>PLN03140 ABC transporter G family member; Provisional
Probab=21.11 E-value=1.5e+03 Score=27.49 Aligned_cols=10 Identities=20% Similarity=0.541 Sum_probs=4.2
Q ss_pred HHHHhhhhhc
Q 013584 322 VVLCLFWVGL 331 (440)
Q Consensus 322 ~ii~ii~~~~ 331 (440)
+++.+++.|+
T Consensus 688 ~l~~~lf~Gf 697 (1470)
T PLN03140 688 LLLVFLLGGF 697 (1470)
T ss_pred HHHHHHHccc
Confidence 3334444444
No 200
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=21.07 E-value=40 Score=37.81 Aligned_cols=11 Identities=27% Similarity=0.495 Sum_probs=4.9
Q ss_pred CCChhhHhhccc
Q 013584 59 SWPQSYRQSIDL 70 (440)
Q Consensus 59 ~~~~~~~~~~~~ 70 (440)
+|-- +|.+.-+
T Consensus 345 SWkV-RRaAaKc 355 (1233)
T KOG1824|consen 345 SWKV-RRAAAKC 355 (1233)
T ss_pred hHHH-HHHHHHH
Confidence 3653 4444433
No 201
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=21.00 E-value=7.3e+02 Score=26.85 Aligned_cols=11 Identities=27% Similarity=0.615 Sum_probs=4.4
Q ss_pred HHHHHhhhhhc
Q 013584 321 LVVLCLFWVGL 331 (440)
Q Consensus 321 ~~ii~ii~~~~ 331 (440)
++++.+++.|+
T Consensus 510 ~~~~~~lf~G~ 520 (617)
T TIGR00955 510 FVIPFLLFGGF 520 (617)
T ss_pred HHHHHHHHhhc
Confidence 33333444443
No 202
>TIGR03745 conj_TIGR03745 integrating conjugative element membrane protein, PFL_4702 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=20.70 E-value=4.7e+02 Score=21.27 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=10.4
Q ss_pred HHHHHHhhhcCCCCCCHHHHHH
Q 013584 211 GILLRRCLDSEPGLETYPDIGQ 232 (440)
Q Consensus 211 ~~lL~~~~~~~~~~~sy~~i~~ 232 (440)
...+.+-.+-+.++.++.|++.
T Consensus 60 ~~a~~ty~Ei~~Gk~~W~~fg~ 81 (104)
T TIGR03745 60 YHALGTYHEIRTGKATWGDFGA 81 (104)
T ss_pred HHHHHHHHHHHcchhhHHhCcc
Confidence 3444444444555555555433
No 203
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=20.59 E-value=4.8e+02 Score=23.66 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 013584 196 GLLILVAFGVLSFYTGILLRRCL 218 (440)
Q Consensus 196 g~illi~~g~l~~~t~~lL~~~~ 218 (440)
|++.+++.|+..-+.++++.+..
T Consensus 126 GlItlll~a~vgGfamy~my~y~ 148 (226)
T COG4858 126 GLITLLLTAVVGGFAMYIMYYYA 148 (226)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHH
Confidence 77777776666666666665544
No 204
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=20.46 E-value=4.7e+02 Score=21.64 Aligned_cols=65 Identities=17% Similarity=0.200 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHhhhccccchhHHHHH--hh-C-HHHHHHHHHHHHHHH----HHHHHHHHhhhcCCCCCCHHHH
Q 013584 165 SYAQALLNGMNVLCGVGILSTPYAAK--EG-G-WFGLLILVAFGVLSF----YTGILLRRCLDSEPGLETYPDI 230 (440)
Q Consensus 165 s~~~~~~~ii~~iIG~GiLslP~a~~--~~-G-~~g~illi~~g~l~~----~t~~lL~~~~~~~~~~~sy~~i 230 (440)
.|....+.++-.++|+..+.+...+. .. | -.-...+++.|++++ |-.+++..+.+.++| .+|.+|
T Consensus 40 pwK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG~Y~~~i~y~a~rg~~G-ysf~~I 112 (115)
T PF05915_consen 40 PWKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPGFYHTRIAYYAWRGYKG-YSFDDI 112 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhccHHHHHHHHHHHcCCCC-CCHhhC
Confidence 45555556666666776666654422 21 2 122223334444443 555555555544444 466554
No 205
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=20.17 E-value=90 Score=30.20 Aligned_cols=7 Identities=29% Similarity=0.582 Sum_probs=2.6
Q ss_pred ecCCchh
Q 013584 12 IESDEEE 18 (440)
Q Consensus 12 ~~~~~~~ 18 (440)
+++|+|+
T Consensus 272 v~ed~e~ 278 (355)
T KOG3593|consen 272 VSEDSES 278 (355)
T ss_pred ccccccc
Confidence 3333333
Done!