Query 013585
Match_columns 440
No_of_seqs 248 out of 780
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 05:20:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013585.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013585hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0627 Heat shock transcripti 100.0 7.5E-32 1.6E-36 264.1 7.7 154 1-155 48-209 (304)
2 PF00447 HSF_DNA-bind: HSF-typ 99.7 6.7E-18 1.5E-22 142.5 1.9 54 2-55 36-102 (103)
3 smart00415 HSF heat shock fact 99.7 1.9E-17 4.2E-22 141.1 1.8 52 2-53 39-105 (105)
4 COG5169 HSF1 Heat shock transc 99.6 9.3E-17 2E-21 158.9 0.1 107 1-110 46-169 (282)
5 PF03310 Cauli_DNA-bind: Cauli 95.8 0.035 7.6E-07 50.0 7.5 70 97-169 2-71 (121)
6 TIGR02449 conserved hypothetic 87.1 2.3 4.9E-05 34.7 6.2 43 87-129 21-63 (65)
7 PF06005 DUF904: Protein of un 85.7 5.6 0.00012 32.8 7.9 42 85-126 23-64 (72)
8 PF11932 DUF3450: Protein of u 84.7 9.1 0.0002 37.4 10.3 69 82-153 51-119 (251)
9 TIGR03752 conj_TIGR03752 integ 84.1 6.6 0.00014 42.7 9.7 56 84-139 70-126 (472)
10 PF12325 TMF_TATA_bd: TATA ele 83.9 5.1 0.00011 36.0 7.5 58 81-138 31-91 (120)
11 PF06005 DUF904: Protein of un 82.7 5.6 0.00012 32.8 6.7 36 88-123 33-68 (72)
12 COG3074 Uncharacterized protei 82.5 8.6 0.00019 32.2 7.7 53 85-140 23-75 (79)
13 PF04340 DUF484: Protein of un 82.2 5.6 0.00012 38.2 7.6 77 34-146 16-92 (225)
14 PRK15422 septal ring assembly 82.0 6 0.00013 33.6 6.7 21 85-105 23-43 (79)
15 TIGR02894 DNA_bind_RsfA transc 80.7 10 0.00023 35.9 8.6 54 89-142 99-152 (161)
16 PF10473 CENP-F_leu_zip: Leuci 80.6 13 0.00027 34.5 9.0 60 84-143 56-115 (140)
17 PF10168 Nup88: Nuclear pore c 79.7 8.8 0.00019 43.6 9.2 63 83-145 561-623 (717)
18 PF02183 HALZ: Homeobox associ 79.6 7.8 0.00017 29.3 6.0 41 85-125 3-43 (45)
19 PRK10884 SH3 domain-containing 78.5 17 0.00036 35.4 9.5 9 146-154 184-192 (206)
20 PF10779 XhlA: Haemolysin XhlA 72.9 44 0.00095 27.0 9.1 57 85-141 4-60 (71)
21 TIGR02449 conserved hypothetic 72.0 47 0.001 27.2 9.0 56 85-140 5-60 (65)
22 PF04111 APG6: Autophagy prote 67.7 28 0.00061 35.7 8.6 49 84-132 47-95 (314)
23 KOG4460 Nuclear pore complex, 65.8 26 0.00056 39.3 8.3 62 84-145 585-646 (741)
24 KOG4196 bZIP transcription fac 64.8 21 0.00046 33.0 6.3 43 90-139 77-119 (135)
25 PF12329 TMF_DNA_bd: TATA elem 64.1 52 0.0011 27.1 8.0 55 84-138 16-70 (74)
26 PF07200 Mod_r: Modifier of ru 64.1 49 0.0011 29.6 8.6 66 84-154 38-103 (150)
27 PF04880 NUDE_C: NUDE protein, 64.0 3.8 8.2E-05 38.9 1.5 39 85-128 19-57 (166)
28 PF11932 DUF3450: Protein of u 63.5 77 0.0017 31.0 10.4 66 85-153 47-112 (251)
29 KOG0977 Nuclear envelope prote 63.3 41 0.00088 37.5 9.3 62 84-145 166-235 (546)
30 TIGR00219 mreC rod shape-deter 61.6 24 0.00053 35.6 6.8 26 88-113 67-92 (283)
31 smart00338 BRLZ basic region l 61.4 21 0.00046 27.9 5.1 33 84-116 30-62 (65)
32 TIGR03752 conj_TIGR03752 integ 61.1 20 0.00042 39.2 6.3 42 85-126 64-105 (472)
33 KOG4005 Transcription factor X 60.5 41 0.00089 34.2 7.9 52 85-136 95-151 (292)
34 PF04156 IncA: IncA protein; 60.4 1.3E+02 0.0029 27.7 11.0 59 84-142 92-150 (191)
35 PRK10803 tol-pal system protei 59.9 43 0.00094 33.3 8.1 42 98-139 58-99 (263)
36 PF11414 Suppressor_APC: Adeno 58.7 46 0.001 28.4 6.9 60 85-145 5-64 (84)
37 PRK09039 hypothetical protein; 58.4 66 0.0014 33.4 9.4 45 85-129 121-165 (343)
38 PF07407 Seadorna_VP6: Seadorn 58.1 33 0.00071 36.3 7.1 43 82-129 34-76 (420)
39 PRK10963 hypothetical protein; 57.9 44 0.00095 32.4 7.6 77 35-147 14-90 (223)
40 PF05377 FlaC_arch: Flagella a 56.5 82 0.0018 25.2 7.5 19 120-138 26-44 (55)
41 PF04728 LPP: Lipoprotein leuc 56.4 69 0.0015 25.7 7.1 43 85-127 8-50 (56)
42 PF08826 DMPK_coil: DMPK coile 55.3 87 0.0019 25.3 7.6 37 94-130 11-47 (61)
43 PF08317 Spc7: Spc7 kinetochor 54.7 79 0.0017 32.3 9.2 50 87-136 209-258 (325)
44 PF04201 TPD52: Tumour protein 54.3 39 0.00084 32.2 6.3 40 85-124 27-66 (162)
45 PF09726 Macoilin: Transmembra 53.9 47 0.001 37.9 8.1 26 84-109 422-447 (697)
46 PF12329 TMF_DNA_bd: TATA elem 53.6 39 0.00084 27.8 5.5 42 85-126 31-72 (74)
47 PF01519 DUF16: Protein of unk 51.9 55 0.0012 29.1 6.5 35 93-127 66-100 (102)
48 PF14282 FlxA: FlxA-like prote 51.6 83 0.0018 27.4 7.6 24 85-108 17-40 (106)
49 PF00170 bZIP_1: bZIP transcri 51.6 43 0.00094 26.1 5.3 29 85-113 31-59 (64)
50 PRK11637 AmiB activator; Provi 50.9 1.2E+02 0.0026 31.9 10.1 56 85-140 80-135 (428)
51 PF07407 Seadorna_VP6: Seadorn 50.6 72 0.0016 33.9 8.1 37 83-119 42-80 (420)
52 PF11853 DUF3373: Protein of u 50.2 15 0.00032 40.3 3.3 37 85-129 23-59 (489)
53 PRK00888 ftsB cell division pr 50.1 41 0.0009 29.3 5.5 35 88-122 28-62 (105)
54 COG4942 Membrane-bound metallo 49.9 91 0.002 33.8 9.0 46 84-129 63-108 (420)
55 COG1579 Zn-ribbon protein, pos 49.6 64 0.0014 32.4 7.4 47 85-131 36-82 (239)
56 PRK11637 AmiB activator; Provi 49.3 1E+02 0.0022 32.4 9.3 10 353-362 341-350 (428)
57 COG1579 Zn-ribbon protein, pos 48.6 60 0.0013 32.6 7.0 48 84-131 93-140 (239)
58 smart00787 Spc7 Spc7 kinetocho 48.6 1.1E+02 0.0024 31.6 9.2 50 88-137 205-254 (312)
59 PF00038 Filament: Intermediat 48.5 1.1E+02 0.0024 30.2 9.0 55 85-139 214-268 (312)
60 PF02183 HALZ: Homeobox associ 48.4 45 0.00098 25.2 4.7 29 88-116 13-41 (45)
61 TIGR02894 DNA_bind_RsfA transc 48.3 74 0.0016 30.4 7.2 38 85-122 109-146 (161)
62 PF14817 HAUS5: HAUS augmin-li 47.8 99 0.0022 35.1 9.3 48 84-131 83-130 (632)
63 PF03904 DUF334: Domain of unk 47.8 1.2E+02 0.0025 30.6 8.7 41 86-126 42-82 (230)
64 PF08826 DMPK_coil: DMPK coile 47.6 76 0.0017 25.6 6.2 46 82-127 13-58 (61)
65 PF06156 DUF972: Protein of un 47.5 77 0.0017 28.0 6.8 45 85-129 13-57 (107)
66 COG5481 Uncharacterized conser 46.0 1.3E+02 0.0028 24.8 7.2 28 95-122 5-32 (67)
67 PRK09039 hypothetical protein; 45.8 1.1E+02 0.0025 31.7 8.8 56 87-142 130-185 (343)
68 PF10211 Ax_dynein_light: Axon 45.5 99 0.0022 29.5 7.7 53 84-139 124-176 (189)
69 PRK00295 hypothetical protein; 45.3 1.1E+02 0.0024 24.8 6.9 37 91-127 16-52 (68)
70 PF04849 HAP1_N: HAP1 N-termin 44.9 1.4E+02 0.0031 31.1 9.2 78 85-162 165-264 (306)
71 PRK15422 septal ring assembly 44.7 2E+02 0.0044 24.6 9.0 30 87-116 11-40 (79)
72 PF11559 ADIP: Afadin- and alp 44.2 2E+02 0.0043 25.9 9.1 43 85-127 57-99 (151)
73 PRK00846 hypothetical protein; 43.6 1E+02 0.0023 26.0 6.7 33 96-128 29-61 (77)
74 PF06160 EzrA: Septation ring 43.2 93 0.002 34.3 8.1 35 6-40 212-251 (560)
75 PF11559 ADIP: Afadin- and alp 43.0 2.1E+02 0.0044 25.8 9.0 44 85-128 64-107 (151)
76 PRK00736 hypothetical protein; 42.7 1.1E+02 0.0025 24.7 6.6 40 87-126 12-51 (68)
77 COG1382 GimC Prefoldin, chaper 42.6 1E+02 0.0022 28.0 6.9 43 85-127 68-110 (119)
78 PF04102 SlyX: SlyX; InterPro 42.6 85 0.0019 25.3 5.9 42 87-128 11-52 (69)
79 PF04977 DivIC: Septum formati 42.5 82 0.0018 24.7 5.7 24 90-113 20-43 (80)
80 PF10473 CENP-F_leu_zip: Leuci 42.2 2.2E+02 0.0047 26.5 9.1 34 88-121 53-86 (140)
81 KOG3863 bZIP transcription fac 41.8 46 0.001 37.5 5.5 61 36-110 478-541 (604)
82 KOG2751 Beclin-like protein [S 41.8 2.2E+02 0.0047 31.2 10.2 40 85-124 181-220 (447)
83 PRK04406 hypothetical protein; 41.5 1.1E+02 0.0024 25.4 6.5 28 97-124 28-55 (75)
84 COG3074 Uncharacterized protei 41.5 1.8E+02 0.0038 24.7 7.5 45 86-130 10-54 (79)
85 PF12718 Tropomyosin_1: Tropom 41.4 1.3E+02 0.0028 27.6 7.5 40 87-126 21-60 (143)
86 PF12308 Noelin-1: Neurogenesi 41.4 83 0.0018 28.0 5.9 53 84-136 44-96 (101)
87 PF13747 DUF4164: Domain of un 41.1 1.7E+02 0.0036 25.0 7.6 43 84-126 36-78 (89)
88 TIGR02132 phaR_Bmeg polyhydrox 41.0 1.2E+02 0.0025 29.7 7.4 56 84-139 83-138 (189)
89 PF05524 PEP-utilisers_N: PEP- 41.0 62 0.0014 27.9 5.2 56 100-155 34-90 (123)
90 KOG4010 Coiled-coil protein TP 40.9 80 0.0017 31.1 6.3 39 86-124 43-81 (208)
91 PF02403 Seryl_tRNA_N: Seryl-t 40.7 1.7E+02 0.0036 24.8 7.7 50 83-132 39-91 (108)
92 PF08581 Tup_N: Tup N-terminal 40.4 2.3E+02 0.0049 24.0 8.3 49 86-134 3-58 (79)
93 PRK04325 hypothetical protein; 40.4 1.2E+02 0.0026 25.0 6.5 30 96-125 25-54 (74)
94 PRK13922 rod shape-determining 39.7 87 0.0019 30.8 6.6 24 88-111 70-93 (276)
95 KOG4360 Uncharacterized coiled 39.5 98 0.0021 34.6 7.4 55 85-139 224-278 (596)
96 PRK13169 DNA replication intia 39.4 1.2E+02 0.0026 27.1 6.7 43 85-127 13-55 (110)
97 PRK02793 phi X174 lysis protei 38.4 1.4E+02 0.003 24.5 6.5 34 93-126 21-54 (72)
98 PRK14127 cell division protein 38.1 92 0.002 27.8 5.8 40 89-128 32-71 (109)
99 PHA02562 46 endonuclease subun 38.1 1.8E+02 0.004 31.0 9.2 60 91-150 355-420 (562)
100 PF04420 CHD5: CHD5-like prote 38.0 1.6E+02 0.0034 27.4 7.6 56 88-143 41-108 (161)
101 PRK03947 prefoldin subunit alp 37.9 1.5E+02 0.0033 26.3 7.3 48 84-131 91-138 (140)
102 PF04325 DUF465: Protein of un 37.8 53 0.0011 24.7 3.7 24 86-109 26-49 (49)
103 PF08912 Rho_Binding: Rho Bind 37.7 2.4E+02 0.0052 23.5 9.0 25 87-111 3-27 (69)
104 PF08317 Spc7: Spc7 kinetochor 37.4 1.4E+02 0.003 30.6 7.8 8 85-92 189-196 (325)
105 PF07716 bZIP_2: Basic region 37.3 58 0.0013 24.8 4.0 23 85-107 30-52 (54)
106 PF09726 Macoilin: Transmembra 37.2 1E+02 0.0023 35.2 7.5 59 85-143 416-481 (697)
107 cd00632 Prefoldin_beta Prefold 37.1 1.5E+02 0.0033 25.2 6.9 44 84-127 60-103 (105)
108 PF02994 Transposase_22: L1 tr 36.8 78 0.0017 33.2 6.1 54 85-138 110-167 (370)
109 PRK14160 heat shock protein Gr 36.7 2.7E+02 0.0058 27.6 9.3 42 85-126 59-100 (211)
110 PF07106 TBPIP: Tat binding pr 36.4 1.7E+02 0.0038 26.8 7.7 56 85-140 77-134 (169)
111 PRK15396 murein lipoprotein; P 36.2 1.7E+02 0.0037 24.8 6.8 43 85-127 30-72 (78)
112 PF12709 Kinetocho_Slk19: Cent 35.9 1E+02 0.0023 26.6 5.6 33 85-117 47-79 (87)
113 PRK14143 heat shock protein Gr 35.4 2.7E+02 0.0059 27.9 9.3 42 85-126 65-106 (238)
114 PF13874 Nup54: Nucleoporin co 35.4 2.4E+02 0.0052 25.5 8.3 44 87-130 44-87 (141)
115 TIGR00414 serS seryl-tRNA synt 35.3 1.8E+02 0.0039 31.0 8.6 71 82-152 39-114 (418)
116 PF05377 FlaC_arch: Flagella a 35.2 1.7E+02 0.0037 23.4 6.3 17 89-105 16-32 (55)
117 PRK14148 heat shock protein Gr 35.0 3.2E+02 0.0069 26.7 9.4 44 83-126 36-79 (195)
118 PF10805 DUF2730: Protein of u 35.0 2.2E+02 0.0047 24.8 7.6 38 93-130 48-87 (106)
119 PF12718 Tropomyosin_1: Tropom 34.9 1.7E+02 0.0036 26.9 7.2 45 84-128 32-76 (143)
120 PRK04778 septation ring format 34.7 1.6E+02 0.0035 32.5 8.3 120 6-125 216-365 (569)
121 PF07106 TBPIP: Tat binding pr 34.7 1.3E+02 0.0028 27.7 6.5 54 83-136 82-137 (169)
122 TIGR02338 gimC_beta prefoldin, 34.6 1.7E+02 0.0037 25.3 6.9 44 84-127 64-107 (110)
123 PF12325 TMF_TATA_bd: TATA ele 34.3 3.5E+02 0.0076 24.4 9.1 48 85-132 21-68 (120)
124 PF02388 FemAB: FemAB family; 33.4 1.7E+02 0.0037 30.8 7.9 56 84-139 239-297 (406)
125 COG1730 GIM5 Predicted prefold 33.4 2.3E+02 0.005 26.5 7.9 48 84-131 91-138 (145)
126 COG2433 Uncharacterized conser 32.9 1.5E+02 0.0033 33.8 7.7 43 84-126 426-468 (652)
127 PF11382 DUF3186: Protein of u 32.8 1.1E+02 0.0023 31.4 6.1 26 85-110 37-62 (308)
128 PRK06800 fliH flagellar assemb 32.7 2.2E+02 0.0047 28.3 7.8 32 85-116 36-67 (228)
129 PF14817 HAUS5: HAUS augmin-li 32.5 3.1E+02 0.0068 31.2 10.2 58 95-152 80-137 (632)
130 KOG1103 Predicted coiled-coil 31.9 1.4E+02 0.0031 32.2 6.9 50 84-133 242-291 (561)
131 PF04156 IncA: IncA protein; 31.8 3.8E+02 0.0083 24.7 9.2 44 85-128 107-150 (191)
132 COG3159 Uncharacterized protei 31.8 1E+02 0.0022 30.8 5.5 77 32-144 12-88 (218)
133 PF10458 Val_tRNA-synt_C: Valy 31.8 2.6E+02 0.0056 22.1 8.1 26 85-110 2-27 (66)
134 PRK05431 seryl-tRNA synthetase 31.7 1.9E+02 0.0041 30.9 8.0 71 82-152 37-111 (425)
135 PF15294 Leu_zip: Leucine zipp 30.6 1.2E+02 0.0026 31.2 6.0 44 85-128 130-173 (278)
136 COG1730 GIM5 Predicted prefold 30.6 1.6E+02 0.0034 27.6 6.3 43 84-126 98-140 (145)
137 PF07888 CALCOCO1: Calcium bin 30.0 2E+02 0.0044 32.2 8.0 36 87-122 143-178 (546)
138 PRK14011 prefoldin subunit alp 29.8 2.6E+02 0.0057 25.9 7.6 40 84-123 85-124 (144)
139 PF07334 IFP_35_N: Interferon- 29.7 84 0.0018 26.6 4.0 12 167-178 39-50 (76)
140 cd00890 Prefoldin Prefoldin is 29.6 2.2E+02 0.0049 24.2 6.8 43 84-126 84-126 (129)
141 PF00170 bZIP_1: bZIP transcri 29.6 2.7E+02 0.0058 21.6 6.7 31 88-118 27-57 (64)
142 PRK10803 tol-pal system protei 29.5 1.3E+02 0.0027 30.1 5.9 31 93-123 60-90 (263)
143 PF04111 APG6: Autophagy prote 29.3 3.8E+02 0.0083 27.6 9.5 30 85-114 62-91 (314)
144 KOG2185 Predicted RNA-processi 29.2 1.7E+02 0.0036 32.1 7.0 48 83-134 416-463 (486)
145 PF01920 Prefoldin_2: Prefoldi 29.1 2.5E+02 0.0055 23.1 6.8 42 84-125 59-100 (106)
146 PRK13729 conjugal transfer pil 28.9 2.9E+02 0.0063 30.6 8.9 42 95-136 77-118 (475)
147 PF10805 DUF2730: Protein of u 28.8 2.6E+02 0.0057 24.3 7.1 37 85-128 54-92 (106)
148 PF04849 HAP1_N: HAP1 N-termin 28.8 4.9E+02 0.011 27.3 10.1 66 88-153 228-293 (306)
149 PF10018 Med4: Vitamin-D-recep 28.8 3.7E+02 0.008 25.4 8.7 60 90-153 5-64 (188)
150 KOG0977 Nuclear envelope prote 28.6 2.4E+02 0.0052 31.7 8.3 43 84-126 152-194 (546)
151 COG1345 FliD Flagellar capping 28.5 2.4E+02 0.0051 31.1 8.2 55 82-139 424-478 (483)
152 PF09727 CortBP2: Cortactin-bi 28.5 3.1E+02 0.0067 26.9 8.2 48 92-139 139-186 (192)
153 PRK09343 prefoldin subunit bet 28.4 2.5E+02 0.0054 24.9 7.0 41 85-125 69-109 (121)
154 PF04380 BMFP: Membrane fusoge 28.2 1E+02 0.0022 25.6 4.2 29 93-121 49-77 (79)
155 PF04012 PspA_IM30: PspA/IM30 28.2 4.4E+02 0.0095 25.0 9.1 42 93-134 97-138 (221)
156 PRK14158 heat shock protein Gr 27.9 4.6E+02 0.01 25.5 9.3 43 84-126 37-79 (194)
157 KOG2196 Nuclear porin [Nuclear 27.6 2.3E+02 0.005 28.9 7.3 43 84-126 117-159 (254)
158 COG1422 Predicted membrane pro 27.6 2E+02 0.0044 28.4 6.8 48 86-135 71-118 (201)
159 PF05064 Nsp1_C: Nsp1-like C-t 27.5 28 0.00061 30.7 0.9 39 93-138 56-94 (116)
160 KOG4057 Uncharacterized conser 27.5 4E+02 0.0086 25.6 8.4 59 85-143 17-75 (180)
161 PLN02320 seryl-tRNA synthetase 27.5 2.4E+02 0.0052 31.3 8.0 69 84-152 104-175 (502)
162 PF01025 GrpE: GrpE; InterPro 27.5 1.2E+02 0.0026 27.4 5.0 37 89-125 13-49 (165)
163 PF14193 DUF4315: Domain of un 27.5 2.9E+02 0.0062 23.6 6.8 54 99-154 6-59 (83)
164 PF08781 DP: Transcription fac 27.3 2.8E+02 0.0061 25.9 7.3 18 88-105 2-19 (142)
165 PF07889 DUF1664: Protein of u 27.3 2.9E+02 0.0064 25.2 7.3 52 84-138 40-91 (126)
166 PF12269 zf-CpG_bind_C: CpG bi 27.2 1.6E+02 0.0034 29.7 6.1 26 118-143 39-64 (236)
167 PRK13923 putative spore coat p 27.0 4.7E+02 0.01 25.2 8.9 38 101-138 111-148 (170)
168 PRK13729 conjugal transfer pil 26.9 2E+02 0.0042 31.9 7.1 44 88-131 77-120 (475)
169 PF00038 Filament: Intermediat 26.7 5.2E+02 0.011 25.6 9.7 50 88-137 210-259 (312)
170 PRK14153 heat shock protein Gr 26.7 2.8E+02 0.006 27.1 7.5 38 88-125 34-71 (194)
171 KOG0804 Cytoplasmic Zn-finger 26.6 2.6E+02 0.0057 30.9 7.9 49 88-136 348-396 (493)
172 PRK06798 fliD flagellar cappin 26.5 2.3E+02 0.0049 30.6 7.5 19 99-117 384-402 (440)
173 PRK03947 prefoldin subunit alp 26.5 1.9E+02 0.0042 25.6 6.0 41 84-124 98-138 (140)
174 PF09787 Golgin_A5: Golgin sub 26.5 2.5E+02 0.0054 30.7 7.9 40 87-126 274-313 (511)
175 PF10186 Atg14: UV radiation r 26.4 5.2E+02 0.011 24.9 9.5 36 91-126 60-95 (302)
176 smart00338 BRLZ basic region l 26.3 2.8E+02 0.006 21.6 6.2 31 89-119 28-58 (65)
177 PRK14162 heat shock protein Gr 26.2 4.7E+02 0.01 25.5 9.0 41 86-126 38-78 (194)
178 PRK14163 heat shock protein Gr 26.2 4.1E+02 0.009 26.4 8.7 40 87-126 40-79 (214)
179 PF07798 DUF1640: Protein of u 26.1 5.2E+02 0.011 24.1 9.1 16 13-28 5-20 (177)
180 PF08614 ATG16: Autophagy prot 26.1 3.9E+02 0.0084 25.3 8.3 36 89-124 104-139 (194)
181 PF13094 CENP-Q: CENP-Q, a CEN 25.9 3.9E+02 0.0086 24.3 8.1 34 105-138 45-78 (160)
182 PF03961 DUF342: Protein of un 25.9 3.5E+02 0.0075 28.8 8.8 25 85-109 332-356 (451)
183 PRK13922 rod shape-determining 25.8 1.3E+02 0.0027 29.7 5.1 18 87-104 76-93 (276)
184 PF08172 CASP_C: CASP C termin 25.3 1.7E+02 0.0037 29.4 6.0 37 85-121 84-120 (248)
185 PF10226 DUF2216: Uncharacteri 25.0 3.9E+02 0.0085 26.4 8.1 24 86-109 54-77 (195)
186 PF11285 DUF3086: Protein of u 24.9 2.6E+02 0.0055 28.9 7.1 49 88-143 5-61 (283)
187 PF02403 Seryl_tRNA_N: Seryl-t 24.9 1.9E+02 0.0042 24.4 5.5 20 96-115 69-88 (108)
188 PF09744 Jnk-SapK_ap_N: JNK_SA 24.9 5E+02 0.011 24.5 8.6 46 84-129 47-92 (158)
189 PF06156 DUF972: Protein of un 24.8 2E+02 0.0042 25.5 5.6 39 84-122 19-57 (107)
190 PF02996 Prefoldin: Prefoldin 24.8 2.6E+02 0.0056 23.7 6.3 43 84-126 74-116 (120)
191 PRK14154 heat shock protein Gr 24.6 4.5E+02 0.0098 26.0 8.6 39 88-126 53-91 (208)
192 PF04859 DUF641: Plant protein 24.6 1.5E+02 0.0032 27.4 4.9 40 85-124 92-131 (131)
193 PF04977 DivIC: Septum formati 24.5 1.9E+02 0.0042 22.5 5.1 11 143-153 52-62 (80)
194 PF06785 UPF0242: Uncharacteri 24.5 2.9E+02 0.0062 29.6 7.6 51 84-134 131-181 (401)
195 PF06216 RTBV_P46: Rice tungro 24.4 2.1E+02 0.0047 29.6 6.5 44 85-128 69-112 (389)
196 PRK09973 putative outer membra 24.4 3.2E+02 0.007 23.6 6.6 44 85-128 29-72 (85)
197 TIGR01843 type_I_hlyD type I s 24.0 4.2E+02 0.009 26.8 8.6 38 91-128 141-178 (423)
198 PF10779 XhlA: Haemolysin XhlA 23.9 3.9E+02 0.0083 21.5 7.9 47 98-144 3-49 (71)
199 PRK14140 heat shock protein Gr 23.9 5.9E+02 0.013 24.8 9.1 40 87-126 37-76 (191)
200 PF13851 GAS: Growth-arrest sp 23.9 6.6E+02 0.014 24.2 9.9 22 87-108 100-121 (201)
201 smart00340 HALZ homeobox assoc 23.8 94 0.002 23.9 2.9 21 88-108 13-33 (44)
202 PF15070 GOLGA2L5: Putative go 23.8 6.8E+02 0.015 28.5 10.8 56 84-139 84-146 (617)
203 cd07619 BAR_Rich2 The Bin/Amph 23.7 5.5E+02 0.012 26.0 9.2 25 131-155 186-210 (248)
204 PRK14139 heat shock protein Gr 23.7 5.4E+02 0.012 24.9 8.8 42 85-126 30-71 (185)
205 PLN02678 seryl-tRNA synthetase 23.5 3.2E+02 0.007 29.7 8.0 71 82-152 42-116 (448)
206 PF10224 DUF2205: Predicted co 23.5 4.6E+02 0.01 22.3 9.1 24 88-111 9-33 (80)
207 PF03127 GAT: GAT domain; Int 23.4 2.7E+02 0.006 23.5 6.1 75 86-162 10-84 (100)
208 PF10883 DUF2681: Protein of u 23.4 3.5E+02 0.0076 23.4 6.7 34 87-120 23-56 (87)
209 KOG1760 Molecular chaperone Pr 23.3 2.8E+02 0.006 25.8 6.4 40 85-124 79-118 (131)
210 PHA01819 hypothetical protein 23.3 1.1E+02 0.0023 27.5 3.6 30 118-150 73-102 (129)
211 PRK07737 fliD flagellar cappin 23.3 3E+02 0.0064 30.2 7.8 27 98-124 445-471 (501)
212 cd00890 Prefoldin Prefoldin is 23.3 2.2E+02 0.0047 24.3 5.6 37 84-120 91-127 (129)
213 PRK05892 nucleoside diphosphat 23.2 2.6E+02 0.0057 26.0 6.5 28 81-108 12-39 (158)
214 PRK06664 fliD flagellar hook-a 23.2 3.1E+02 0.0068 31.3 8.2 30 96-125 602-631 (661)
215 PF07798 DUF1640: Protein of u 23.2 6.2E+02 0.013 23.6 10.4 20 90-109 76-95 (177)
216 PF14723 SSFA2_C: Sperm-specif 23.0 1.7E+02 0.0036 28.5 5.1 18 87-104 105-122 (179)
217 PF10224 DUF2205: Predicted co 22.6 4E+02 0.0087 22.6 6.8 44 82-125 18-61 (80)
218 TIGR00293 prefoldin, archaeal 22.6 3E+02 0.0065 23.8 6.4 42 84-125 83-124 (126)
219 KOG4001 Axonemal dynein light 22.5 3.7E+02 0.0081 27.1 7.5 57 81-140 186-242 (259)
220 PRK14155 heat shock protein Gr 22.5 4.2E+02 0.0092 26.0 7.9 34 85-125 18-51 (208)
221 PRK05729 valS valyl-tRNA synth 22.5 2.8E+02 0.006 32.3 7.7 31 84-114 808-838 (874)
222 KOG0996 Structural maintenance 22.4 3.4E+02 0.0074 33.3 8.4 44 85-128 547-590 (1293)
223 PRK15396 murein lipoprotein; P 22.3 4.8E+02 0.01 22.1 8.0 48 87-134 25-72 (78)
224 PF14645 Chibby: Chibby family 22.3 4E+02 0.0087 23.9 7.1 43 85-127 69-111 (116)
225 TIGR02977 phageshock_pspA phag 22.2 6.5E+02 0.014 24.2 9.2 41 96-136 101-141 (219)
226 PRK14144 heat shock protein Gr 22.1 5.6E+02 0.012 25.1 8.7 39 88-126 46-84 (199)
227 PF13874 Nup54: Nucleoporin co 22.1 4.2E+02 0.0091 24.0 7.4 36 107-142 57-92 (141)
228 PF10376 Mei5: Double-strand r 21.7 3.7E+02 0.0081 26.6 7.5 63 82-144 133-196 (221)
229 PF08172 CASP_C: CASP C termin 21.7 2E+02 0.0043 28.9 5.7 26 85-110 98-123 (248)
230 TIGR00219 mreC rod shape-deter 21.5 2E+02 0.0043 29.1 5.7 12 98-109 70-81 (283)
231 PF15456 Uds1: Up-regulated Du 21.5 4E+02 0.0087 24.1 7.1 26 86-111 21-46 (124)
232 PRK14145 heat shock protein Gr 21.4 7.8E+02 0.017 24.1 9.6 43 84-126 42-84 (196)
233 PF13942 Lipoprotein_20: YfhG 21.3 4.1E+02 0.009 25.9 7.4 11 109-119 124-134 (179)
234 PRK04778 septation ring format 21.3 2.7E+02 0.0059 30.7 7.1 60 85-144 353-412 (569)
235 PF05278 PEARLI-4: Arabidopsis 21.1 6.4E+02 0.014 26.0 9.1 19 110-128 223-241 (269)
236 smart00787 Spc7 Spc7 kinetocho 21.1 3.4E+02 0.0073 28.1 7.3 41 84-124 148-188 (312)
237 PRK10698 phage shock protein P 21.0 4.3E+02 0.0093 25.8 7.7 43 96-138 101-143 (222)
238 PRK08032 fliD flagellar cappin 21.0 3.6E+02 0.0077 29.1 7.8 51 92-142 404-461 (462)
239 PRK03918 chromosome segregatio 20.9 3.5E+02 0.0076 30.7 8.0 36 89-124 195-230 (880)
240 PF04012 PspA_IM30: PspA/IM30 20.9 4.4E+02 0.0096 24.9 7.7 38 97-134 94-131 (221)
241 PF15035 Rootletin: Ciliary ro 20.8 4.8E+02 0.01 25.0 7.8 59 85-143 86-152 (182)
242 PRK10722 hypothetical protein; 20.8 3.5E+02 0.0076 27.6 7.1 27 100-126 175-201 (247)
243 PF07989 Microtub_assoc: Micro 20.6 5E+02 0.011 21.6 7.5 50 85-134 5-69 (75)
244 PF05837 CENP-H: Centromere pr 20.6 5.7E+02 0.012 22.2 8.2 31 85-115 22-52 (106)
245 PRK13923 putative spore coat p 20.5 3.9E+02 0.0084 25.8 7.0 40 85-124 109-148 (170)
246 PF15058 Speriolin_N: Sperioli 20.4 1.2E+02 0.0026 29.9 3.7 27 84-110 9-35 (200)
247 PTZ00419 valyl-tRNA synthetase 20.3 3.2E+02 0.007 32.3 7.8 31 84-114 926-956 (995)
248 PRK14157 heat shock protein Gr 20.3 5.8E+02 0.012 25.6 8.4 36 84-119 81-116 (227)
249 PF10393 Matrilin_ccoil: Trime 20.2 2.5E+02 0.0054 21.7 4.7 17 115-131 30-46 (47)
250 PRK00846 hypothetical protein; 20.1 3.1E+02 0.0067 23.2 5.6 12 131-142 39-50 (77)
251 KOG4196 bZIP transcription fac 20.1 4.7E+02 0.01 24.5 7.2 32 100-131 46-77 (135)
No 1
>KOG0627 consensus Heat shock transcription factor [Transcription]
Probab=99.97 E-value=7.5e-32 Score=264.14 Aligned_cols=154 Identities=40% Similarity=0.558 Sum_probs=132.4
Q ss_pred Chhhchhhhhhh----hhhhccccCCCceeec--CCCceeecCCccCCcccccccccccCCCCCCCCCCccccccccC--
Q 013585 1 MEQKGEMGKEFK----SQVYHNLISKGFRKVD--PDRWEFANEGFLRGQKHLLRSISRRKPAHGHGHQQSHQQNAQSS-- 72 (440)
Q Consensus 1 ~~~k~vLPkyFK----sSFvRQLN~YGFrKv~--~d~wEFahe~F~RGq~~LL~~IkRrk~~~~~s~q~~~q~~~qss-- 72 (440)
.|++.+||+||| +|||||||+||||||+ +++|||+|++|+||+++||++|+|||..+...... ..+.....
T Consensus 48 ~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~wEF~n~~F~rg~~~LL~~I~rrk~~~~~~~~~-~~~~~~~~~~ 126 (304)
T KOG0627|consen 48 EFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRWEFSNPCFVRGQKLLLKNIKRRKSASRIFQTK-DSPKSFERQL 126 (304)
T ss_pred HHHHHHhHHhccccCccceeeeecccceeecCCCCCceeecChhHhcChHHHHHHHhhhccccCCcccc-cCcchhhhhh
Confidence 389999999999 9999999999999999 99999999999999999999999999887764210 01111100
Q ss_pred cCccchhccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Q 013585 73 SVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFV 152 (440)
Q Consensus 73 s~g~~~E~~k~~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLakavqnP~Fl~qLv 152 (440)
....++...+..+..++.+|++++++|+.|+++||+++..++.+++.+.+++.+++++|++|+.|+++++++|.|+.++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 206 (304)
T KOG0627|consen 127 NLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQDALRATIQTSKRVVKSKETRNSLILSFLARDVQSPGFLNQAP 206 (304)
T ss_pred hHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccCchhhHHHHHhhHHHhhccCccchhccc
Confidence 11123344566799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhh
Q 013585 153 QQQ 155 (440)
Q Consensus 153 qq~ 155 (440)
+.+
T Consensus 207 ~~~ 209 (304)
T KOG0627|consen 207 QRQ 209 (304)
T ss_pred chh
Confidence 764
No 2
>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []. Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....
Probab=99.68 E-value=6.7e-18 Score=142.55 Aligned_cols=54 Identities=44% Similarity=0.656 Sum_probs=45.8
Q ss_pred hhhchhhhhhh----hhhhccccCCCceeecCCC---------ceeecCCccCCcccccccccccCC
Q 013585 2 EQKGEMGKEFK----SQVYHNLISKGFRKVDPDR---------WEFANEGFLRGQKHLLRSISRRKP 55 (440)
Q Consensus 2 ~~k~vLPkyFK----sSFvRQLN~YGFrKv~~d~---------wEFahe~F~RGq~~LL~~IkRrk~ 55 (440)
|++.|||+||+ +||+||||+|||+|+.... |+|+|++|+||+++||.+|+||++
T Consensus 36 f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~f~h~~F~r~~~~lL~~I~r~~~ 102 (103)
T PF00447_consen 36 FEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWEFYHPNFRRGQPDLLSKIKRRKS 102 (103)
T ss_dssp HHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEEEEETT-BTTBCCCTTTS---TT
T ss_pred HhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeEECCcCccCCCHHHHhhCccCCC
Confidence 68899999999 9999999999999997543 999999999999999999999874
No 3
>smart00415 HSF heat shock factor.
Probab=99.66 E-value=1.9e-17 Score=141.07 Aligned_cols=52 Identities=52% Similarity=0.834 Sum_probs=49.4
Q ss_pred hhhchhhhhhh----hhhhccccCCCceeecC-----------CCceeecCCccCCccccccccccc
Q 013585 2 EQKGEMGKEFK----SQVYHNLISKGFRKVDP-----------DRWEFANEGFLRGQKHLLRSISRR 53 (440)
Q Consensus 2 ~~k~vLPkyFK----sSFvRQLN~YGFrKv~~-----------d~wEFahe~F~RGq~~LL~~IkRr 53 (440)
|.+.|||+||| +||+||||+|||+|+.. +.|+|+|++|+||+++||.+|+||
T Consensus 39 f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~~~~~~F~h~~F~Rg~~~lL~~I~Rk 105 (105)
T smart00415 39 FAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFTSDQWEFANPDFVRGQPELLRNIKRK 105 (105)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCCCCceEEECcCccCcCHHHHHhCcCC
Confidence 67899999999 99999999999999986 789999999999999999999997
No 4
>COG5169 HSF1 Heat shock transcription factor [Transcription]
Probab=99.60 E-value=9.3e-17 Score=158.86 Aligned_cols=107 Identities=24% Similarity=0.356 Sum_probs=70.6
Q ss_pred Chhhchhhhhhh----hhhhccccCCCceeec-C---------CCceeecCCccCCcccccccccccCCCCCCCCCCccc
Q 013585 1 MEQKGEMGKEFK----SQVYHNLISKGFRKVD-P---------DRWEFANEGFLRGQKHLLRSISRRKPAHGHGHQQSHQ 66 (440)
Q Consensus 1 ~~~k~vLPkyFK----sSFvRQLN~YGFrKv~-~---------d~wEFahe~F~RGq~~LL~~IkRrk~~~~~s~q~~~q 66 (440)
+|.+.|||+||| +|||||||+|||+||. . ..|||.|++|++|..++|++|+|+|...........
T Consensus 46 ~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~~~~n~~~wef~~~nF~~g~~~~L~~i~r~ka~~~~~~~~~~- 124 (282)
T COG5169 46 EFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQRSYYNENVWEFGNKNFQLGMIELLKKIKRKKAPSNRVDSNNE- 124 (282)
T ss_pred hhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCcccccccchhheeecCchhccCcHHHHHHhhhhhcCcccccccCC-
Confidence 588999999999 9999999999999997 1 249999999999999999999997754432111000
Q ss_pred cccccCcCccchh---ccccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 67 QNAQSSSVGACVE---VGKFGLEEEVERLKRDKNVLMQELVRLRQQQ 110 (440)
Q Consensus 67 ~~~qsss~g~~~E---~~k~~Le~EIe~LKrDn~~L~qEL~rLRQqQ 110 (440)
......+.-++ .....+..++.+|...++.++..+.+|+.-+
T Consensus 125 --s~~~~~~~~~~~~i~~~~~~~~~~S~l~~~~~~~~~~~~~lk~~~ 169 (282)
T COG5169 125 --SKDAMMNIEVENIILPQSELYNSLSSLSNVNQTLLLYLNELKEYN 169 (282)
T ss_pred --CCccccchhhhhhhchhcccCcchhHHhhhhHHHhhhhccccchh
Confidence 00000000000 1112244556666666666666666666543
No 5
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=95.84 E-value=0.035 Score=49.96 Aligned_cols=70 Identities=16% Similarity=0.346 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHhhhhhhhhhhhhhcccc
Q 013585 97 NVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKR 169 (440)
Q Consensus 97 ~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLakavqnP~Fl~qLvqq~~~~~~~~~~~~KKR 169 (440)
+....||..+++.+..+...+.+|.++++..++.+++|.++-||++++ +...+.+-+=++.-+.+..+++
T Consensus 2 ~~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkD---isdkIdkCeC~Kelle~Lk~q~ 71 (121)
T PF03310_consen 2 ATIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKD---ISDKIDKCECNKELLEALKKQP 71 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHH---HHHHHHT-TTHHHHHHHHT---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH---HHHHHHhchhhHHHHHHHhcCC
Confidence 456789999999999999999999999999999999999999999997 7777755321223334455543
No 6
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=87.07 E-value=2.3 Score=34.71 Aligned_cols=43 Identities=21% Similarity=0.405 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 87 EEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQ 129 (440)
Q Consensus 87 ~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEq 129 (440)
.|...|+.+...+..|=..|.++......++.+|-.||.+||+
T Consensus 21 ~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 21 SENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 3333444444444444445555555556666666666666653
No 7
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=85.73 E-value=5.6 Score=32.82 Aligned_cols=42 Identities=26% Similarity=0.357 Sum_probs=20.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
|..|++.||.++..|..|-..|+++.+..+.+-.+..+||++
T Consensus 23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 23 LQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666664444444444444444444444444444433
No 8
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=84.71 E-value=9.1 Score=37.37 Aligned_cols=69 Identities=23% Similarity=0.376 Sum_probs=50.7
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHh
Q 013585 82 KFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQ 153 (440)
Q Consensus 82 k~~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLakavqnP~Fl~qLvq 153 (440)
+..+..+++.|+++.+.|.....++.......+.++..+++++..++...+.+.-+|.+++. -|.++|.
T Consensus 51 ~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~---~L~~~v~ 119 (251)
T PF11932_consen 51 KQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID---ELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHh
Confidence 33466677777777777777777777777777777888888888888888888888887774 5566664
No 9
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=84.06 E-value=6.6 Score=42.70 Aligned_cols=56 Identities=25% Similarity=0.334 Sum_probs=41.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQR-LQGMEQRHQQMMAFLA 139 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eR-Lq~mEqrQqQMmsFLa 139 (440)
.+..++..|.++|+.|..|..+||++.++++.+++.--+. -+.+++.++|+-.-+.
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~ 126 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQ 126 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999998888643333 2344445555555444
No 10
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=83.86 E-value=5.1 Score=36.01 Aligned_cols=58 Identities=28% Similarity=0.508 Sum_probs=41.6
Q ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 81 GKFGLEEEVERLKRDKNVLMQELVRLRQQQ---QASDSQLQTMVQRLQGMEQRHQQMMAFL 138 (440)
Q Consensus 81 ~k~~Le~EIe~LKrDn~~L~qEL~rLRQqQ---q~~~~qLq~L~eRLq~mEqrQqQMmsFL 138 (440)
....+..++.+|.+.+..+..||++|-... .....++..|+..+..++.|.+.++-.|
T Consensus 31 E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Lell 91 (120)
T PF12325_consen 31 ELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELL 91 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344567777888888888888888887776 3445566777777777777777666655
No 11
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=82.74 E-value=5.6 Score=32.83 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 88 EVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQR 123 (440)
Q Consensus 88 EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eR 123 (440)
+...|+.++..|..|..+|++++.....++..|-.|
T Consensus 33 ~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 33 KNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333444444444444444444444444333333
No 12
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.55 E-value=8.6 Score=32.24 Aligned_cols=53 Identities=28% Similarity=0.448 Sum_probs=34.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAK 140 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLak 140 (440)
|.-||+.||..|+.|.+|+..+++....++.+-+.+.+.-.+ .|..+-+.|.|
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~---WQerlrsLLGk 75 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNG---WQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhh
Confidence 455889999999999999887777766555554444433322 44455555543
No 13
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=82.22 E-value=5.6 Score=38.16 Aligned_cols=77 Identities=18% Similarity=0.343 Sum_probs=36.8
Q ss_pred eecCCccCCcccccccccccCCCCCCCCCCccccccccCcCccchhccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 34 FANEGFLRGQKHLLRSISRRKPAHGHGHQQSHQQNAQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQAS 113 (440)
Q Consensus 34 Fahe~F~RGq~~LL~~IkRrk~~~~~s~q~~~q~~~qsss~g~~~E~~k~~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~ 113 (440)
=.||.|...+++||..|+=. |.+ +..+ ......+.+||++.+.+
T Consensus 16 ~~~PdFf~~~~~ll~~l~~p---h~~---------------~~av------------------SL~erQ~~~LR~~~~~L 59 (225)
T PF04340_consen 16 RQHPDFFERHPELLAELRLP---HPS---------------GGAV------------------SLVERQLERLRERNRQL 59 (225)
T ss_dssp -------------------------------------------HH------------------HHHHHHHHHHHHHHHHH
T ss_pred HhCcHHHHhCHHHHHHcCCC---CCC---------------CCcc------------------cHHHHHHHHHHHHHHHH
Confidence 35999999999999988731 110 1011 22344556677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 013585 114 DSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPG 146 (440)
Q Consensus 114 ~~qLq~L~eRLq~mEqrQqQMmsFLakavqnP~ 146 (440)
+.+++.|.+.-+.-|+.++++..+..+++.-.+
T Consensus 60 ~~~l~~Li~~Ar~Ne~~~~~~~~l~l~LL~a~s 92 (225)
T PF04340_consen 60 EEQLEELIENARENEAIFQRLHRLVLALLAARS 92 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 777888888888889999999999888887654
No 14
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=82.02 E-value=6 Score=33.57 Aligned_cols=21 Identities=43% Similarity=0.566 Sum_probs=15.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVR 105 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~r 105 (440)
|.-||+.||.+|..|.+|+..
T Consensus 23 LqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445777888888877777666
No 15
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=80.66 E-value=10 Score=35.93 Aligned_cols=54 Identities=19% Similarity=0.364 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013585 89 VERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAV 142 (440)
Q Consensus 89 Ie~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLakav 142 (440)
...++.++..|..|+.+|+++...++.++..|.+++..++..-+.|+..+-+|-
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RAR 152 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRAR 152 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888888888888999999888888888887776553
No 16
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=80.60 E-value=13 Score=34.45 Aligned_cols=60 Identities=30% Similarity=0.404 Sum_probs=50.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQ 143 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLakavq 143 (440)
.+..+++.+....+.|..||..++.+...+...++.+.+|+...|..+.-+.++|..+=+
T Consensus 56 ~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ 115 (140)
T PF10473_consen 56 TLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQ 115 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 467788888888888999999999999999999999999999999888877777764443
No 17
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=79.67 E-value=8.8 Score=43.62 Aligned_cols=63 Identities=16% Similarity=0.333 Sum_probs=55.6
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 013585 83 FGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSP 145 (440)
Q Consensus 83 ~~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLakavqnP 145 (440)
..+...+..|+..++.-..||..++++...++.....|.+|+.....+|+.++.-+.++++..
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888999999999999999999999999999999999999999999999888777643
No 18
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=79.58 E-value=7.8 Score=29.32 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=30.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQ 125 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq 125 (440)
++.+-+.||+....|..+-.+|+++.+.+..+++.+..+++
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45566777788888888877888777777777777777664
No 19
>PRK10884 SH3 domain-containing protein; Provisional
Probab=78.45 E-value=17 Score=35.40 Aligned_cols=9 Identities=22% Similarity=0.460 Sum_probs=4.6
Q ss_pred hhHHHHHhh
Q 013585 146 GFLAQFVQQ 154 (440)
Q Consensus 146 ~Fl~qLvqq 154 (440)
|.+..|+-+
T Consensus 184 GlllGlilp 192 (206)
T PRK10884 184 GLLLGLLLP 192 (206)
T ss_pred HHHHHHHhc
Confidence 445555544
No 20
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=72.87 E-value=44 Score=26.97 Aligned_cols=57 Identities=11% Similarity=0.306 Sum_probs=47.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKA 141 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLaka 141 (440)
+.+++.+++.+.+.+...+..+.+.....+.++.++.++|..++..++=+.-++.-+
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~iiGa 60 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRTIIGA 60 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888889999999999999999999999999998888666655543
No 21
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=71.96 E-value=47 Score=27.21 Aligned_cols=56 Identities=21% Similarity=0.230 Sum_probs=36.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAK 140 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLak 140 (440)
|+..|+.|-.-.+.|..|=..||+++.....+=..|.++......|-..|++-|..
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~ 60 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKA 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45566666555566666666666666666666666677777777777777776643
No 22
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=67.66 E-value=28 Score=35.69 Aligned_cols=49 Identities=29% Similarity=0.584 Sum_probs=42.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQ 132 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQq 132 (440)
.+..+++.|+.+...|.+||..|.++...+..++..++......++...
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~ 95 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEE 95 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999999999999999999999998888777664444
No 23
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.83 E-value=26 Score=39.29 Aligned_cols=62 Identities=16% Similarity=0.292 Sum_probs=55.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSP 145 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLakavqnP 145 (440)
.+..-+..|++.+..-.|+|..++|+...++..-..|.+|+...--||.-+|.-+.++++.|
T Consensus 585 e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~ 646 (741)
T KOG4460|consen 585 EIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSF 646 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Confidence 45556778899999999999999999999999999999999999999999999999999877
No 24
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=64.85 E-value=21 Score=33.00 Aligned_cols=43 Identities=14% Similarity=0.325 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 90 ERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLA 139 (440)
Q Consensus 90 e~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLa 139 (440)
+.|.+++..|++||.+|+++... |..++...+.+-+++.+|-.
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~-------~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSR-------LRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhh
Confidence 34566777777777777776554 44455555555666666653
No 25
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=64.14 E-value=52 Score=27.09 Aligned_cols=55 Identities=22% Similarity=0.356 Sum_probs=37.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFL 138 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFL 138 (440)
.|.+|.+.|.+....+..-|-+||.+....+.++..+..|+...+..-..+-.+|
T Consensus 16 ~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 16 QLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556667777777777777777777777777777777777777665555554444
No 26
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=64.12 E-value=49 Score=29.63 Aligned_cols=66 Identities=29% Similarity=0.278 Sum_probs=46.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHhh
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQ 154 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLakavqnP~Fl~qLvqq 154 (440)
.+..++..|-+.+-.+..+|..+|.+....-..++.+.++++..+++++.+..-. +|.++...++.
T Consensus 38 ~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~-----s~~~l~~~L~~ 103 (150)
T PF07200_consen 38 ELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNY-----SPDALLARLQA 103 (150)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHHHH
Confidence 3556677777777777888888888888888888888888888888777775433 35666666654
No 27
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=64.02 E-value=3.8 Score=38.86 Aligned_cols=39 Identities=26% Similarity=0.444 Sum_probs=10.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 128 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mE 128 (440)
|+.|| .+++.|..|++|||.+...++.++ .+.+|+...+
T Consensus 19 LE~EL----dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~~~~ 57 (166)
T PF04880_consen 19 LESEL----DEKENLREEVQRLKDELRDLKQEL-IVQEKLRKAN 57 (166)
T ss_dssp HHHHH----HHHHHHHHCH-------------------------
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhh
Confidence 55666 567777777777777777777777 6666665443
No 28
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=63.49 E-value=77 Score=30.99 Aligned_cols=66 Identities=20% Similarity=0.281 Sum_probs=41.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHh
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQ 153 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLakavqnP~Fl~qLvq 153 (440)
+.++-..|..+...|..|+..|+.+....+.++...++++...+++..++-.--..+. .++.+.+.
T Consensus 47 ~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~---p~m~~m~~ 112 (251)
T PF11932_consen 47 WDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELV---PLMEQMID 112 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 4555666666666666666666666666666666666667777666666666555444 24445544
No 29
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=63.30 E-value=41 Score=37.49 Aligned_cols=62 Identities=31% Similarity=0.421 Sum_probs=42.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCc
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQ-------QASDSQLQTMVQRLQGMEQRHQQ-MMAFLAKAVQSP 145 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQ-------q~~~~qLq~L~eRLq~mEqrQqQ-MmsFLakavqnP 145 (440)
.+++++.+||+++..|+.+|.++|.+. ....+++|.|.++|..+.+-..+ +..-.+++.+++
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~ 235 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDT 235 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc
Confidence 478888888888888888888888753 34567788888888888755543 333334443333
No 30
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=61.60 E-value=24 Score=35.57 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 88 EVERLKRDKNVLMQELVRLRQQQQAS 113 (440)
Q Consensus 88 EIe~LKrDn~~L~qEL~rLRQqQq~~ 113 (440)
++.+|++||..|+.|+..++++++..
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~ 92 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEIL 92 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55567788888888887776555443
No 31
>smart00338 BRLZ basic region leucin zipper.
Probab=61.43 E-value=21 Score=27.87 Aligned_cols=33 Identities=33% Similarity=0.517 Sum_probs=22.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQ 116 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~q 116 (440)
.|+.++..|..++..|..++..|+.+...++.+
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777777777776666555444
No 32
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=61.13 E-value=20 Score=39.23 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
|..++..++++.+.|..|-.+|+++.+.++.+-+.+.+|++.
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~ 105 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQ 105 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 556677777777777777777777777666666666666544
No 33
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=60.45 E-value=41 Score=34.19 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQ-----GMEQRHQQMMA 136 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq-----~mEqrQqQMms 136 (440)
|+.+|..|-.+++.|..|-..||.+..++-.+-+.+..+|. -||-+|+|++.
T Consensus 95 me~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~~ 151 (292)
T KOG4005|consen 95 MEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQHN 151 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 45556666666666666666666665555554444444443 24445554444
No 34
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=60.40 E-value=1.3e+02 Score=27.69 Aligned_cols=59 Identities=20% Similarity=0.346 Sum_probs=51.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAV 142 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLakav 142 (440)
.+..|++.+.+....+..++..++...+.....++...+|++..+...+.+..=+..+.
T Consensus 92 ~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 92 QLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788999999999999999999999988888889999999998888888887777665
No 35
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=59.93 E-value=43 Score=33.35 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 98 VLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLA 139 (440)
Q Consensus 98 ~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLa 139 (440)
.|.+.|..|+++...++-+++.+...|+.+.+||+.+-.=|-
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld 99 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQID 99 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777778888888888886655444
No 36
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=58.71 E-value=46 Score=28.36 Aligned_cols=60 Identities=18% Similarity=0.296 Sum_probs=39.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSP 145 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLakavqnP 145 (440)
+-..++.|-+++.+|+++|..+.+...=+..+|+.+.+|....-+... ..+|...+.+.|
T Consensus 5 ~lk~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~rq~~Lg~~~~-~~~~~~d~~~~~ 64 (84)
T PF11414_consen 5 MLKRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQERQRHLGRNGT-QFDFQMDLHREQ 64 (84)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc-ccCcccccccch
Confidence 445678899999999999999999988888888888888765443322 245555554433
No 37
>PRK09039 hypothetical protein; Validated
Probab=58.42 E-value=66 Score=33.41 Aligned_cols=45 Identities=24% Similarity=0.260 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQ 129 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEq 129 (440)
+..++..+|........+|.+|++|...++.|+..++..|...|.
T Consensus 121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~ 165 (343)
T PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEK 165 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555544455555555555555555555554444443
No 38
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=58.14 E-value=33 Score=36.33 Aligned_cols=43 Identities=23% Similarity=0.338 Sum_probs=28.5
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 82 KFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQ 129 (440)
Q Consensus 82 k~~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEq 129 (440)
.++|..|..+||+|++.|..||.+|+.+-.. ..+.+|++.++-
T Consensus 34 ~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~-----s~V~E~vet~dv 76 (420)
T PF07407_consen 34 NFALRMENHSLKKENNDLKIEVERLENEMLR-----SHVCEDVETNDV 76 (420)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHhhh-----hhhhhHHHHHHH
Confidence 4468888889999999999998888443221 224555555544
No 39
>PRK10963 hypothetical protein; Provisional
Probab=57.85 E-value=44 Score=32.42 Aligned_cols=77 Identities=10% Similarity=0.206 Sum_probs=44.8
Q ss_pred ecCCccCCcccccccccccCCCCCCCCCCccccccccCcCccchhccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 35 ANEGFLRGQKHLLRSISRRKPAHGHGHQQSHQQNAQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQASD 114 (440)
Q Consensus 35 ahe~F~RGq~~LL~~IkRrk~~~~~s~q~~~q~~~qsss~g~~~E~~k~~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~ 114 (440)
.||+|.-.+++||..|+=. |.. . .+-+.+ ...+.+||++.+.++
T Consensus 14 ~~PdFf~~h~~Ll~~L~lp---h~~-----------~-gaVSL~---------------------ErQ~~~LR~r~~~Le 57 (223)
T PRK10963 14 QNPDFFIRNARLVEQMRVP---HPV-----------R-GTVSLV---------------------EWQMARQRNHIHVLE 57 (223)
T ss_pred HCchHHhhCHHHHHhccCC---CCC-----------C-CeecHH---------------------HHHHHHHHHHHHHHH
Confidence 5999999999999976531 110 0 011122 223345555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Q 013585 115 SQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGF 147 (440)
Q Consensus 115 ~qLq~L~eRLq~mEqrQqQMmsFLakavqnP~F 147 (440)
.+|..|.+.-+.-|.-.+++.....+++.-.+|
T Consensus 58 ~~l~~Li~~A~~Ne~l~~~~~~l~l~Ll~a~~~ 90 (223)
T PRK10963 58 EEMTLLMEQAIANEDLFYRLLPLQSRLAAADSL 90 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 566666666666666666666666666654433
No 40
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=56.46 E-value=82 Score=25.17 Aligned_cols=19 Identities=5% Similarity=0.398 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013585 120 MVQRLQGMEQRHQQMMAFL 138 (440)
Q Consensus 120 L~eRLq~mEqrQqQMmsFL 138 (440)
+.+.++.+++.-+.+|+.-
T Consensus 26 i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 26 ISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444445555543
No 41
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=56.39 E-value=69 Score=25.67 Aligned_cols=43 Identities=26% Similarity=0.372 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGM 127 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~m 127 (440)
|..+|..|+.....|..++..+|..-+..+.+-..-.+||...
T Consensus 8 Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 8 LSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455666666666666666666666666666666667777654
No 42
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=55.28 E-value=87 Score=25.29 Aligned_cols=37 Identities=30% Similarity=0.444 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 94 RDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQR 130 (440)
Q Consensus 94 rDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqr 130 (440)
+-++.+..||.++|..+..++.+|+..+.|.+.++..
T Consensus 11 rakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~e 47 (61)
T PF08826_consen 11 RAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQE 47 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777666666666666666666665555433
No 43
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=54.66 E-value=79 Score=32.32 Aligned_cols=50 Identities=18% Similarity=0.409 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 87 EEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMA 136 (440)
Q Consensus 87 ~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMms 136 (440)
.+++.||.+...+..+|...|++....+.+++.+.+++...+.+.+++.+
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~ 258 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLA 258 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555544444333
No 44
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=54.27 E-value=39 Score=32.22 Aligned_cols=40 Identities=28% Similarity=0.366 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRL 124 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRL 124 (440)
.++|-+.||++...+..||..|||-...-+.++..|.++|
T Consensus 27 sEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 27 SEEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3677788899888888888888888777777777777664
No 45
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=53.85 E-value=47 Score=37.87 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=17.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQ 109 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQq 109 (440)
.|+.+|++||.|.....+.=..||++
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsq 447 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQ 447 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 47888888888876665555555555
No 46
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=53.55 E-value=39 Score=27.82 Aligned_cols=42 Identities=17% Similarity=0.430 Sum_probs=28.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
+..-|..|+..+..+..++..++.+.......+..+++|+.+
T Consensus 31 ~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 31 LNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445666677777777777777777776667777776666654
No 47
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=51.86 E-value=55 Score=29.11 Aligned_cols=35 Identities=23% Similarity=0.136 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 93 KRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGM 127 (440)
Q Consensus 93 KrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~m 127 (440)
-.....|..|+...=+..+.+...|+.|..||..|
T Consensus 66 GEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~~ 100 (102)
T PF01519_consen 66 GEQIKELQVEQKAQGKTLQLILKTLQSINKRLDKM 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33333333333333333333344444444444443
No 48
>PF14282 FlxA: FlxA-like protein
Probab=51.63 E-value=83 Score=27.38 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQ 108 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQ 108 (440)
....|+.|++.+..|..+|..|..
T Consensus 17 ~~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 17 SDSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 478899999999999999998887
No 49
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=51.56 E-value=43 Score=26.12 Aligned_cols=29 Identities=38% Similarity=0.556 Sum_probs=14.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQAS 113 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~ 113 (440)
|+.++..|..++..|..++..|+++...+
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555444433
No 50
>PRK11637 AmiB activator; Provisional
Probab=50.92 E-value=1.2e+02 Score=31.90 Aligned_cols=56 Identities=14% Similarity=0.156 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAK 140 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLak 140 (440)
++.++..+.++.+.+..+|..+.++...++.++..++++|...+..-.+++..+.+
T Consensus 80 l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 80 QEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555555555555555555555544444444444444444
No 51
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=50.56 E-value=72 Score=33.90 Aligned_cols=37 Identities=22% Similarity=0.323 Sum_probs=18.9
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 013585 83 FGLEEEVERLKRDKNVLMQELVR--LRQQQQASDSQLQT 119 (440)
Q Consensus 83 ~~Le~EIe~LKrDn~~L~qEL~r--LRQqQq~~~~qLq~ 119 (440)
..|..|++.||.+.+.|..|+.+ +-+.++..+.+..+
T Consensus 42 ~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~ 80 (420)
T PF07407_consen 42 HSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDK 80 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 34566666666666666555554 33333334443333
No 52
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=50.24 E-value=15 Score=40.34 Aligned_cols=37 Identities=22% Similarity=0.472 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQ 129 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEq 129 (440)
...+++.|+ +.+.|.+||..|++|+. .|.+|+..+|+
T Consensus 23 ~~~~~~~~q-kie~L~kql~~Lk~q~~-------~l~~~v~k~e~ 59 (489)
T PF11853_consen 23 MADDIDLLQ-KIEALKKQLEELKAQQD-------DLNDRVDKVEK 59 (489)
T ss_pred hhhhhHHHH-HHHHHHHHHHHHHHhhc-------ccccccchhhH
Confidence 445666666 77777777777766655 56666666663
No 53
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=50.10 E-value=41 Score=29.33 Aligned_cols=35 Identities=9% Similarity=0.121 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 88 EVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQ 122 (440)
Q Consensus 88 EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~e 122 (440)
....++++...+.+|+.++++++..++.++..|+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44566777777777777777777666666666544
No 54
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=49.87 E-value=91 Score=33.80 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=29.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQ 129 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEq 129 (440)
.|+.+|..++.+...+..+|.+..-....++.++..++.++...+.
T Consensus 63 kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 63 KLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 4666666666666666666666666666666666666666655443
No 55
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=49.59 E-value=64 Score=32.40 Aligned_cols=47 Identities=26% Similarity=0.369 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRH 131 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQ 131 (440)
+..++++++++...+..|+..++.+....+..++.+.+|+...|.++
T Consensus 36 ~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 36 AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777777777777777777777766666554
No 56
>PRK11637 AmiB activator; Provisional
Probab=49.31 E-value=1e+02 Score=32.39 Aligned_cols=10 Identities=30% Similarity=0.484 Sum_probs=4.5
Q ss_pred ccccccCCcc
Q 013585 353 PTSLIVNGSV 362 (440)
Q Consensus 353 ~~~~~~~~~~ 362 (440)
|+-.+.||.|
T Consensus 341 ~v~A~~~G~V 350 (428)
T PRK11637 341 EVKAIADGRV 350 (428)
T ss_pred eEEecCCeEE
Confidence 4444455543
No 57
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=48.63 E-value=60 Score=32.59 Aligned_cols=48 Identities=23% Similarity=0.369 Sum_probs=37.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRH 131 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQ 131 (440)
.|..|+..++++...|..||+.+...+..++.++..+.+++..+|..-
T Consensus 93 aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~ 140 (239)
T COG1579 93 ALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNL 140 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888888888888888888888888888888777766443
No 58
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=48.59 E-value=1.1e+02 Score=31.55 Aligned_cols=50 Identities=16% Similarity=0.336 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 88 EVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAF 137 (440)
Q Consensus 88 EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsF 137 (440)
++.++|.+...+..|+...+++....+.+++.+..++.....+.+++..=
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~ 254 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTE 254 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444545555555555555555555555555555555544444433333
No 59
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=48.49 E-value=1.1e+02 Score=30.25 Aligned_cols=55 Identities=31% Similarity=0.396 Sum_probs=38.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLA 139 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLa 139 (440)
...|+..+++....|..||..|+.+...++.++..++.++...-..-+..+.-|-
T Consensus 214 ~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le 268 (312)
T PF00038_consen 214 AKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELE 268 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccc
Confidence 4567777888888888888888888887888887777777665544444444443
No 60
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=48.41 E-value=45 Score=25.24 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 88 EVERLKRDKNVLMQELVRLRQQQQASDSQ 116 (440)
Q Consensus 88 EIe~LKrDn~~L~qEL~rLRQqQq~~~~q 116 (440)
..+.|+.++..|..|...|+.+.......
T Consensus 13 ~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 13 SYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444333
No 61
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=48.28 E-value=74 Score=30.37 Aligned_cols=38 Identities=29% Similarity=0.481 Sum_probs=21.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQ 122 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~e 122 (440)
+..++..|+..+..|..|+.+|.+++..++...+.|-.
T Consensus 109 l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~ 146 (161)
T TIGR02894 109 LKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLID 146 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555666666666666655555555555433
No 62
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=47.80 E-value=99 Score=35.08 Aligned_cols=48 Identities=21% Similarity=0.388 Sum_probs=25.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRH 131 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQ 131 (440)
.+..+|++|+.++..|.++|..+..+...-+..++.+.+++....+||
T Consensus 83 ~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~ 130 (632)
T PF14817_consen 83 ELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQ 130 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555555555555555555555544444444
No 63
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=47.76 E-value=1.2e+02 Score=30.62 Aligned_cols=41 Identities=22% Similarity=0.494 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 86 EEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 86 e~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
.+|++.||+++..+..++..+.++|...+.+++++.-.|..
T Consensus 42 nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~e 82 (230)
T PF03904_consen 42 NEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEE 82 (230)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999888888888777765
No 64
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=47.60 E-value=76 Score=25.63 Aligned_cols=46 Identities=11% Similarity=0.325 Sum_probs=36.9
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 82 KFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGM 127 (440)
Q Consensus 82 k~~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~m 127 (440)
++.+.+|+.+.|..+..+...|..-..+...+..+|..|..++..+
T Consensus 13 kQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 13 KQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4457888889999999988888888888888888888887777554
No 65
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=47.54 E-value=77 Score=28.01 Aligned_cols=45 Identities=22% Similarity=0.344 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQ 129 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEq 129 (440)
++..+..|-.+...|+..+..|-++...++.+-+.|.+||...++
T Consensus 13 le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 13 LEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555555566666666666666666666666777777766654
No 66
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=46.02 E-value=1.3e+02 Score=24.75 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 95 DKNVLMQELVRLRQQQQASDSQLQTMVQ 122 (440)
Q Consensus 95 Dn~~L~qEL~rLRQqQq~~~~qLq~L~e 122 (440)
|...+..+|.+|||++..+..-+.+|.+
T Consensus 5 dqaeirl~~arLrqeH~D~DaaInAmi~ 32 (67)
T COG5481 5 DQAEIRLTLARLRQEHADFDAAINAMIA 32 (67)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3455778889999999888888777765
No 67
>PRK09039 hypothetical protein; Validated
Probab=45.82 E-value=1.1e+02 Score=31.65 Aligned_cols=56 Identities=20% Similarity=0.199 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013585 87 EEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAV 142 (440)
Q Consensus 87 ~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLakav 142 (440)
.+......+...|.+||..||.|...++..|...++|....+.+-..+-.-|..++
T Consensus 130 ~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 130 QVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666666666666666554444444444444333
No 68
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=45.46 E-value=99 Score=29.52 Aligned_cols=53 Identities=28% Similarity=0.436 Sum_probs=23.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLA 139 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLa 139 (440)
.+..++..|+.++..|..++..++.+...++... .++.+..+++++.=+.||-
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~---~e~~~~~~k~~~~ei~~lk 176 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKRE---EELRQEEEKKHQEEIDFLK 176 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555444443333221 2223333444444455554
No 69
>PRK00295 hypothetical protein; Provisional
Probab=45.33 E-value=1.1e+02 Score=24.84 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 91 RLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGM 127 (440)
Q Consensus 91 ~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~m 127 (440)
..-.-.+.|-..|.+..++...++.+|+.|.+||..+
T Consensus 16 ~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 16 FQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444455555544444444555555555555543
No 70
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=44.85 E-value=1.4e+02 Score=31.11 Aligned_cols=78 Identities=14% Similarity=0.345 Sum_probs=49.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Q 013585 85 LEEEVERLKRDKNVLMQELVRLR------------------QQQQASDSQLQTM----VQRLQGMEQRHQQMMAFLAKAV 142 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLR------------------QqQq~~~~qLq~L----~eRLq~mEqrQqQMmsFLakav 142 (440)
|...+..|..+|..|..|..+|+ +|......+|..| ..|.....+.|.+|.+.|++++
T Consensus 165 Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqiv 244 (306)
T PF04849_consen 165 LQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIV 244 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777777777777 2223333444333 3345567778889999999998
Q ss_pred cCchhHHHHHhhhhhhhhhh
Q 013585 143 QSPGFLAQFVQQQNDSNKRI 162 (440)
Q Consensus 143 qnP~Fl~qLvqq~~~~~~~~ 162 (440)
.--.-+.++...+++...++
T Consensus 245 dlQ~r~k~~~~EnEeL~q~L 264 (306)
T PF04849_consen 245 DLQQRCKQLAAENEELQQHL 264 (306)
T ss_pred HHHHHHHHHhhhHHHHHHHH
Confidence 76556666665554444444
No 71
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=44.74 E-value=2e+02 Score=24.61 Aligned_cols=30 Identities=13% Similarity=0.268 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 87 EEVERLKRDKNVLMQELVRLRQQQQASDSQ 116 (440)
Q Consensus 87 ~EIe~LKrDn~~L~qEL~rLRQqQq~~~~q 116 (440)
..|..--..+..|..||..||++......+
T Consensus 11 ~KIqqAvdtI~LLqmEieELKekn~~L~~e 40 (79)
T PRK15422 11 AKVQQAIDTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444433
No 72
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=44.21 E-value=2e+02 Score=25.88 Aligned_cols=43 Identities=21% Similarity=0.427 Sum_probs=18.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGM 127 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~m 127 (440)
+...+.+|..|+..|...+.+|+.+....+.++...+.+...+
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l 99 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQL 99 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444443333
No 73
>PRK00846 hypothetical protein; Provisional
Probab=43.62 E-value=1e+02 Score=25.95 Aligned_cols=33 Identities=12% Similarity=0.182 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 96 KNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 128 (440)
Q Consensus 96 n~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mE 128 (440)
.+.|-..|.+..++...++.+|+.|.+||+.++
T Consensus 29 Ie~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 29 LTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444444444444555555555443
No 74
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=43.17 E-value=93 Score=34.31 Aligned_cols=35 Identities=14% Similarity=0.364 Sum_probs=25.7
Q ss_pred hhhhhhh---hhhhccccC--CCceeecCCCceeecCCcc
Q 013585 6 EMGKEFK---SQVYHNLIS--KGFRKVDPDRWEFANEGFL 40 (440)
Q Consensus 6 vLPkyFK---sSFvRQLN~--YGFrKv~~d~wEFahe~F~ 40 (440)
.+|.+++ .-|-.||+- .|+++...+...|.|-.|-
T Consensus 212 ~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~ 251 (560)
T PF06160_consen 212 DIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIE 251 (560)
T ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHH
Confidence 4688888 678788765 6888887777777776653
No 75
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=42.99 E-value=2.1e+02 Score=25.78 Aligned_cols=44 Identities=23% Similarity=0.475 Sum_probs=22.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 128 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mE 128 (440)
+..++++|+.+...|..++..+.++....+.+..++...+...+
T Consensus 64 l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~ 107 (151)
T PF11559_consen 64 LRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLE 107 (151)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555544443
No 76
>PRK00736 hypothetical protein; Provisional
Probab=42.68 E-value=1.1e+02 Score=24.73 Aligned_cols=40 Identities=13% Similarity=0.203 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 87 EEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 87 ~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
..+...-+-.+.|-..|.+..++...+..+|+.|.+|+..
T Consensus 12 ~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 12 IRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444445555544444444444555555555544
No 77
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=42.60 E-value=1e+02 Score=28.03 Aligned_cols=43 Identities=23% Similarity=0.358 Sum_probs=32.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGM 127 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~m 127 (440)
.++-++.|+...+.|..+|..|+.+....+.+++.|...|+.+
T Consensus 68 k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 68 KEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555677888888888888888888877777777776666543
No 78
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=42.58 E-value=85 Score=25.30 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 87 EEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 128 (440)
Q Consensus 87 ~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mE 128 (440)
..+..+-+-.+.|-..|.+..++...++.+++.|.+||..++
T Consensus 11 ~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 11 IKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444555555555555555555555555555555543
No 79
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=42.46 E-value=82 Score=24.69 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 90 ERLKRDKNVLMQELVRLRQQQQAS 113 (440)
Q Consensus 90 e~LKrDn~~L~qEL~rLRQqQq~~ 113 (440)
..++.+...|..++..++++....
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L 43 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEEL 43 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554444333
No 80
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=42.20 E-value=2.2e+02 Score=26.51 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 88 EVERLKRDKNVLMQELVRLRQQQQASDSQLQTMV 121 (440)
Q Consensus 88 EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~ 121 (440)
+++.|+.+...+..++.+|+....++...-..|.
T Consensus 53 eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~ 86 (140)
T PF10473_consen 53 EIETLEEELEELTSELNQLELELDTLRSEKENLD 86 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333343333333333333333333
No 81
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=41.80 E-value=46 Score=37.47 Aligned_cols=61 Identities=30% Similarity=0.393 Sum_probs=33.8
Q ss_pred cCCccCCcccccccccccCCCCCCCCCCccccccccCcCccchh---ccccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 36 NEGFLRGQKHLLRSISRRKPAHGHGHQQSHQQNAQSSSVGACVE---VGKFGLEEEVERLKRDKNVLMQELVRLRQQQ 110 (440)
Q Consensus 36 he~F~RGq~~LL~~IkRrk~~~~~s~q~~~q~~~qsss~g~~~E---~~k~~Le~EIe~LKrDn~~L~qEL~rLRQqQ 110 (440)
...|..-|-.|...|+||-..... .| .|.. .....|+.+|+.|+++++.|.+|=..+....
T Consensus 478 ~~~lte~QLslIrDIRRRgKNkvA-AQ-------------nCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L 541 (604)
T KOG3863|consen 478 KYKLTEEQLSLIRDIRRRGKNKVA-AQ-------------NCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTL 541 (604)
T ss_pred hcccCHHHHHHhhccccccccchh-cc-------------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555677888899987433221 11 1211 0122467777777777777777644444333
No 82
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=41.76 E-value=2.2e+02 Score=31.23 Aligned_cols=40 Identities=28% Similarity=0.441 Sum_probs=31.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRL 124 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRL 124 (440)
+..|.++|+++...|.++|.++..++.....+++.++.+-
T Consensus 181 ~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~ 220 (447)
T KOG2751|consen 181 LLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKA 220 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888888888888888888887777664
No 83
>PRK04406 hypothetical protein; Provisional
Probab=41.53 E-value=1.1e+02 Score=25.40 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 97 NVLMQELVRLRQQQQASDSQLQTMVQRL 124 (440)
Q Consensus 97 ~~L~qEL~rLRQqQq~~~~qLq~L~eRL 124 (440)
+.|-..|.+..++...++.+|+.|.+||
T Consensus 28 e~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 28 EELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 84
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.47 E-value=1.8e+02 Score=24.68 Aligned_cols=45 Identities=16% Similarity=0.308 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 86 EEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQR 130 (440)
Q Consensus 86 e~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqr 130 (440)
+..|..--.-...|..||..|+++.+.+..+.+...+...+.++.
T Consensus 10 E~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~e 54 (79)
T COG3074 10 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERE 54 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Confidence 334444444556666677777666666655555544444444433
No 85
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=41.41 E-value=1.3e+02 Score=27.60 Aligned_cols=40 Identities=20% Similarity=0.415 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 87 EEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 87 ~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
..+..|..++..+..||..|.++.+.++.++..+..+|..
T Consensus 21 ~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~ 60 (143)
T PF12718_consen 21 AKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKE 60 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444433
No 86
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=41.36 E-value=83 Score=27.95 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=41.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMA 136 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMms 136 (440)
.|.++|.++..-.++|...-.+==|.-+.++.+|+.|+.+++..|..++.+++
T Consensus 44 qllekVqNmSqsievL~~RT~rdlqyv~~~E~~mk~l~~k~~~~e~~~~~l~~ 96 (101)
T PF12308_consen 44 QLLEKVQNMSQSIEVLDLRTQRDLQYVRKMETQMKGLESKFRQVEDDRKSLSA 96 (101)
T ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHhcCHHHhhh
Confidence 46677888888777777666665566688999999999999999888886543
No 87
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=41.06 E-value=1.7e+02 Score=25.00 Aligned_cols=43 Identities=30% Similarity=0.446 Sum_probs=24.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
.++.+|..|..|+..|-+||..........+.--..+.+||..
T Consensus 36 ~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~ 78 (89)
T PF13747_consen 36 ELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDS 78 (89)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666665555555554444555555543
No 88
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=40.99 E-value=1.2e+02 Score=29.70 Aligned_cols=56 Identities=18% Similarity=0.331 Sum_probs=40.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLA 139 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLa 139 (440)
.++..|++|..-...+...+..-.++--..+..+..|++||...|.|--+|+..|.
T Consensus 83 nlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE 138 (189)
T TIGR02132 83 NLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLE 138 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36777777755555555554433345556788899999999999999999999887
No 89
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=40.97 E-value=62 Score=27.91 Aligned_cols=56 Identities=13% Similarity=0.240 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCchhHHHHHhhh
Q 013585 100 MQELVRLRQQQQASDSQLQTMVQRLQGME-QRHQQMMAFLAKAVQSPGFLAQFVQQQ 155 (440)
Q Consensus 100 ~qEL~rLRQqQq~~~~qLq~L~eRLq~mE-qrQqQMmsFLakavqnP~Fl~qLvqq~ 155 (440)
..|+.||++-...+..+|+.+.+++...- .....|+..-..+++||.|........
T Consensus 34 ~~E~~rl~~Al~~~~~eL~~l~~~~~~~~~~~~a~If~ah~~~L~D~~l~~~v~~~I 90 (123)
T PF05524_consen 34 EAEIERLEQALEKAREELEQLAERAESKLGEEEAAIFEAHLMMLEDPELIDEVEELI 90 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHSSCTHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcCHhHHHHHHHHH
Confidence 33444444444444444555555543321 233378999999999999998877654
No 90
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=40.95 E-value=80 Score=31.07 Aligned_cols=39 Identities=31% Similarity=0.440 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 86 EEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRL 124 (440)
Q Consensus 86 e~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRL 124 (440)
++|-+.|+.+...+..||+.|||-...-+.++..|.++|
T Consensus 43 e~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 43 EEEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667777777777777777777666666666666664
No 91
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=40.66 E-value=1.7e+02 Score=24.81 Aligned_cols=50 Identities=18% Similarity=0.440 Sum_probs=30.6
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 013585 83 FGLEEEVERLKRDKNVLMQELVRLRQQ---QQASDSQLQTMVQRLQGMEQRHQ 132 (440)
Q Consensus 83 ~~Le~EIe~LKrDn~~L~qEL~rLRQq---Qq~~~~qLq~L~eRLq~mEqrQq 132 (440)
..+..+++.|+.+++.+..++..++.. -..+..++..+.+.+..+|....
T Consensus 39 r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~ 91 (108)
T PF02403_consen 39 RELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLK 91 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888888888887776652 33344444444555544444433
No 92
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=40.42 E-value=2.3e+02 Score=23.95 Aligned_cols=49 Identities=22% Similarity=0.407 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 013585 86 EEEVERLKRDKNVLMQELVRLRQQQQASDSQL-------QTMVQRLQGMEQRHQQM 134 (440)
Q Consensus 86 e~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qL-------q~L~eRLq~mEqrQqQM 134 (440)
.+=++.+|.+...+.+|+..++.+...++.++ +.+.+.|-.+|+.|.+|
T Consensus 3 ~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~km 58 (79)
T PF08581_consen 3 NELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKM 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888887777766666553 34444455555555444
No 93
>PRK04325 hypothetical protein; Provisional
Probab=40.37 E-value=1.2e+02 Score=24.96 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 96 KNVLMQELVRLRQQQQASDSQLQTMVQRLQ 125 (440)
Q Consensus 96 n~~L~qEL~rLRQqQq~~~~qLq~L~eRLq 125 (440)
.+.|-..|.+..++...++.+|+.|.+||.
T Consensus 25 Ie~LN~vv~~Qq~~I~~L~~ql~~L~~rl~ 54 (74)
T PRK04325 25 IDGLNATVARQQQTLDLLQAQLRLLYQQMR 54 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333444444433
No 94
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=39.74 E-value=87 Score=30.83 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 88 EVERLKRDKNVLMQELVRLRQQQQ 111 (440)
Q Consensus 88 EIe~LKrDn~~L~qEL~rLRQqQq 111 (440)
....|+++|..|++|+.+|+.+..
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666667666666666554
No 95
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=39.51 E-value=98 Score=34.60 Aligned_cols=55 Identities=20% Similarity=0.325 Sum_probs=46.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLA 139 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLa 139 (440)
...++.++..++..|+.+|+.++++...+..+...|.+.|+.+-+.|.||-+=+.
T Consensus 224 kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~ 278 (596)
T KOG4360|consen 224 KTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELE 278 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4456677778888999999999999999999999999999999999988776653
No 96
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=39.44 E-value=1.2e+02 Score=27.13 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGM 127 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~m 127 (440)
++..+..|-++...|+++|..|-++...++.+-+.|.+||...
T Consensus 13 le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 13 LEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555556666666666666666666666677777654
No 97
>PRK02793 phi X174 lysis protein; Provisional
Probab=38.36 E-value=1.4e+02 Score=24.52 Aligned_cols=34 Identities=9% Similarity=0.114 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 93 KRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 93 KrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
-.-.+.|-..|.+.+++...+..+|+.|.+||..
T Consensus 21 e~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 21 EITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444434444444444444443
No 98
>PRK14127 cell division protein GpsB; Provisional
Probab=38.10 E-value=92 Score=27.80 Aligned_cols=40 Identities=13% Similarity=0.278 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 89 VERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 128 (440)
Q Consensus 89 Ie~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mE 128 (440)
++.+-.|.+.|..|+.+|+.+...++.++..++.|+...+
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~ 71 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGA 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 4455667777777777777777777777777777766443
No 99
>PHA02562 46 endonuclease subunit; Provisional
Probab=38.08 E-value=1.8e+02 Score=30.97 Aligned_cols=60 Identities=10% Similarity=0.176 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhcCchhHHH
Q 013585 91 RLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQ------QMMAFLAKAVQSPGFLAQ 150 (440)
Q Consensus 91 ~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQq------QMmsFLakavqnP~Fl~q 150 (440)
.+++++..|..|+.+|.........++..+.++|..+...+. ....++...+++++|...
T Consensus 355 ~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~~i~~~~~~~g~~~~ 420 (562)
T PHA02562 355 TLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKDSGIKAS 420 (562)
T ss_pred HHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 334444444555555544444444445555555444333222 234455555566655433
No 100
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=38.03 E-value=1.6e+02 Score=27.43 Aligned_cols=56 Identities=14% Similarity=0.268 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013585 88 EVERLKRDKNVLMQEL------------VRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQ 143 (440)
Q Consensus 88 EIe~LKrDn~~L~qEL------------~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLakavq 143 (440)
+...|++|...|.+|+ .||+.+....+.+++.+.+.+.....+....+..+..++.
T Consensus 41 ~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (161)
T PF04420_consen 41 EQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLWVLT 108 (161)
T ss_dssp HHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554 4566666667777777777776666666666666655443
No 101
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=37.89 E-value=1.5e+02 Score=26.29 Aligned_cols=48 Identities=29% Similarity=0.425 Sum_probs=36.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRH 131 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQ 131 (440)
.+++-++.|++....|...+.++.++......++..+.+.++.+.+++
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 138 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEA 138 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467777888888888888888888887777777777777777665443
No 102
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=37.77 E-value=53 Score=24.72 Aligned_cols=24 Identities=50% Similarity=0.699 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 86 EEEVERLKRDKNVLMQELVRLRQQ 109 (440)
Q Consensus 86 e~EIe~LKrDn~~L~qEL~rLRQq 109 (440)
+.++.+||+++-.|..||.++.+|
T Consensus 26 d~~l~~LKk~kL~LKDei~~ll~q 49 (49)
T PF04325_consen 26 DEELERLKKEKLRLKDEIYRLLRQ 49 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 568899999999999998887654
No 103
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=37.70 E-value=2.4e+02 Score=23.53 Aligned_cols=25 Identities=24% Similarity=0.427 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 87 EEVERLKRDKNVLMQELVRLRQQQQ 111 (440)
Q Consensus 87 ~EIe~LKrDn~~L~qEL~rLRQqQq 111 (440)
..++.|..+++.|...+....++.+
T Consensus 3 kdv~~l~~EkeeL~~klk~~qeel~ 27 (69)
T PF08912_consen 3 KDVANLAKEKEELNNKLKKQQEELQ 27 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3456666666666666554444443
No 104
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=37.44 E-value=1.4e+02 Score=30.58 Aligned_cols=8 Identities=75% Similarity=1.020 Sum_probs=3.1
Q ss_pred cHHHHHHH
Q 013585 85 LEEEVERL 92 (440)
Q Consensus 85 Le~EIe~L 92 (440)
|..++.+|
T Consensus 189 L~~e~~~L 196 (325)
T PF08317_consen 189 LEEELENL 196 (325)
T ss_pred HHHHHHHH
Confidence 33333333
No 105
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=37.31 E-value=58 Score=24.76 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=10.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLR 107 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLR 107 (440)
++.++..|..++..|..++..|+
T Consensus 30 le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 30 LEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444443
No 106
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=37.24 E-value=1e+02 Score=35.22 Aligned_cols=59 Identities=29% Similarity=0.372 Sum_probs=42.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhc
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQ-------RLQGMEQRHQQMMAFLAKAVQ 143 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~e-------RLq~mEqrQqQMmsFLakavq 143 (440)
-.+.+.+|.+|...|..||...||.=+.++.++..+.. -|+.+.+...++.+-+..+.+
T Consensus 416 ~~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~ 481 (697)
T PF09726_consen 416 EPDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQ 481 (697)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677899999999999999999999999999553332 255555555566665555554
No 107
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=37.07 E-value=1.5e+02 Score=25.24 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=36.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGM 127 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~m 127 (440)
..++-+..|+.....+..++.++..+...+..+|..+..+|+.+
T Consensus 60 ~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666778888889999999999999888888888888888764
No 108
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=36.82 E-value=78 Score=33.19 Aligned_cols=54 Identities=19% Similarity=0.463 Sum_probs=19.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQ----ASDSQLQTMVQRLQGMEQRHQQMMAFL 138 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq----~~~~qLq~L~eRLq~mEqrQqQMmsFL 138 (440)
|..|++.+|+.......++..+..... .+..++..+++|+..+|.+...|-.-+
T Consensus 110 lkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~ 167 (370)
T PF02994_consen 110 LKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAI 167 (370)
T ss_dssp --------H-------------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHH
Confidence 556666666666555566655555442 456788888888888888877665544
No 109
>PRK14160 heat shock protein GrpE; Provisional
Probab=36.72 E-value=2.7e+02 Score=27.57 Aligned_cols=42 Identities=21% Similarity=0.322 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
+..+++.|+.+...|..|+..++.+.......+.+...|...
T Consensus 59 l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~k 100 (211)
T PRK14160 59 LKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAK 100 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666543
No 110
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=36.44 E-value=1.7e+02 Score=26.80 Aligned_cols=56 Identities=18% Similarity=0.334 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQL--QTMVQRLQGMEQRHQQMMAFLAK 140 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qL--q~L~eRLq~mEqrQqQMmsFLak 140 (440)
++.++..|+.+...|..++..|+.+...+...+ ..|...+..++..-.+|-+-|..
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555554444444444333 23344444444444444454443
No 111
>PRK15396 murein lipoprotein; Provisional
Probab=36.20 E-value=1.7e+02 Score=24.76 Aligned_cols=43 Identities=23% Similarity=0.336 Sum_probs=22.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGM 127 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~m 127 (440)
|..+|+.|+.+...|.+++..+|..-+..+.+-..-.+||+.+
T Consensus 30 LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 30 LSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555556666543
No 112
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=35.91 E-value=1e+02 Score=26.64 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=21.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQL 117 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qL 117 (440)
.+..|..|..++..|..|+.+|+.+....+.+-
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek 79 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTEREEK 79 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777776655444433
No 113
>PRK14143 heat shock protein GrpE; Provisional
Probab=35.43 E-value=2.7e+02 Score=27.89 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=33.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
...++..|+.+...|..|+..++.++..+...+.++..|...
T Consensus 65 ~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~k 106 (238)
T PRK14143 65 NAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSR 106 (238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888888888888888888888888754
No 114
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=35.42 E-value=2.4e+02 Score=25.51 Aligned_cols=44 Identities=18% Similarity=0.341 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 87 EEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQR 130 (440)
Q Consensus 87 ~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqr 130 (440)
++++.++.....+..+|..|+.....+..++..+..|.....+|
T Consensus 44 ~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR 87 (141)
T PF13874_consen 44 EEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHR 87 (141)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777666555555555555544444433
No 115
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=35.31 E-value=1.8e+02 Score=30.96 Aligned_cols=71 Identities=18% Similarity=0.265 Sum_probs=45.0
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCchhHHHHH
Q 013585 82 KFGLEEEVERLKRDKNVLMQELVRLRQQ----QQASDSQLQTMVQRLQGMEQRHQQMMAFLAK-AVQSPGFLAQFV 152 (440)
Q Consensus 82 k~~Le~EIe~LKrDn~~L~qEL~rLRQq----Qq~~~~qLq~L~eRLq~mEqrQqQMmsFLak-avqnP~Fl~qLv 152 (440)
+..+..+++.|+.+++.+-.++..+++. .+.+..++..+.+++..+|...+.+-.=+.. ++.=|.+++--|
T Consensus 39 ~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~v 114 (418)
T TIGR00414 39 RKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESV 114 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 3457788999999999999998775433 3345556667777777776666654443332 233355555444
No 116
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=35.16 E-value=1.7e+02 Score=23.40 Aligned_cols=17 Identities=6% Similarity=0.392 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013585 89 VERLKRDKNVLMQELVR 105 (440)
Q Consensus 89 Ie~LKrDn~~L~qEL~r 105 (440)
++.+|++++.|..+|.+
T Consensus 16 i~tvk~en~~i~~~ve~ 32 (55)
T PF05377_consen 16 INTVKKENEEISESVEK 32 (55)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 117
>PRK14148 heat shock protein GrpE; Provisional
Probab=34.97 E-value=3.2e+02 Score=26.67 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=35.7
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 83 FGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 83 ~~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
..++.+++.|..+...|..|+..++.+.......+.++..|.+.
T Consensus 36 ~~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~r 79 (195)
T PRK14148 36 LSVEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAER 79 (195)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888888888888888888888888754
No 118
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=34.95 E-value=2.2e+02 Score=24.79 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 93 KRDKNVLMQELVRL--RQQQQASDSQLQTMVQRLQGMEQR 130 (440)
Q Consensus 93 KrDn~~L~qEL~rL--RQqQq~~~~qLq~L~eRLq~mEqr 130 (440)
.+....+.++|..| ++.-..++..|..|+.++..++.+
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~ 87 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSAR 87 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44444444444444 444444444444444444444433
No 119
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=34.94 E-value=1.7e+02 Score=26.87 Aligned_cols=45 Identities=24% Similarity=0.374 Sum_probs=31.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 128 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mE 128 (440)
.++.+|..|.+.+..|..+|.++..+...+...+.....+....|
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E 76 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE 76 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Confidence 467788888888888888888887777777666665555544444
No 120
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=34.73 E-value=1.6e+02 Score=32.46 Aligned_cols=120 Identities=15% Similarity=0.246 Sum_probs=63.2
Q ss_pred hhhhhhh---hhhhccccC--CCceeecCCCceeecCCccCCcccccccccccCC-CCCCCCCCc--ccccc--ccC---
Q 013585 6 EMGKEFK---SQVYHNLIS--KGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKP-AHGHGHQQS--HQQNA--QSS--- 72 (440)
Q Consensus 6 vLPkyFK---sSFvRQLN~--YGFrKv~~d~wEFahe~F~RGq~~LL~~IkRrk~-~~~~s~q~~--~q~~~--qss--- 72 (440)
-+|.+++ .-|=.||+- +|+++...+.+.|.|-.+-.--..|=+.|..... ..+-..... ..... +-.
T Consensus 216 ~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Ly 295 (569)
T PRK04778 216 EIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLY 295 (569)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 3588888 557788875 7888888888888887653322222222221100 000000000 00000 000
Q ss_pred -------cCccchhccccCcHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Q 013585 73 -------SVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQ----------QQASDSQLQTMVQRLQ 125 (440)
Q Consensus 73 -------s~g~~~E~~k~~Le~EIe~LKrDn~~L~qEL~rLRQq----------Qq~~~~qLq~L~eRLq 125 (440)
.....++.....+.+.++.++..+..|..|+.+|++. ...+..++..+++++.
T Consensus 296 d~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~ 365 (569)
T PRK04778 296 DILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYD 365 (569)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHH
Confidence 0001122223357778888888888888888888887 5566666666665554
No 121
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=34.69 E-value=1.3e+02 Score=27.68 Aligned_cols=54 Identities=19% Similarity=0.383 Sum_probs=31.6
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 83 FGLEEEVERLKRDKNVLMQELVRLRQQQ--QASDSQLQTMVQRLQGMEQRHQQMMA 136 (440)
Q Consensus 83 ~~Le~EIe~LKrDn~~L~qEL~rLRQqQ--q~~~~qLq~L~eRLq~mEqrQqQMms 136 (440)
..+.+++..|+.+...|..||..|+... ..+..++..+++.+..++.|-..+-+
T Consensus 82 ~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 82 KELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567777777777777777777766553 23344444555555555544444433
No 122
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=34.58 E-value=1.7e+02 Score=25.27 Aligned_cols=44 Identities=25% Similarity=0.391 Sum_probs=31.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGM 127 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~m 127 (440)
..++-+..|+.....+...+..|.++...++.++..++.+|+.+
T Consensus 64 ~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 64 DKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777788888888888777777777777777666543
No 123
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=34.34 E-value=3.5e+02 Score=24.41 Aligned_cols=48 Identities=17% Similarity=0.360 Sum_probs=37.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQ 132 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQq 132 (440)
|...|.++--+...|..|+.+|.++......++-.+..+....+..-.
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~ 68 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKK 68 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888889999988888888888888888766654333
No 124
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=33.39 E-value=1.7e+02 Score=30.83 Aligned_cols=56 Identities=20% Similarity=0.357 Sum_probs=40.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQ---ASDSQLQTMVQRLQGMEQRHQQMMAFLA 139 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq---~~~~qLq~L~eRLq~mEqrQqQMmsFLa 139 (440)
...+-++.|+.+.+.|..++.+|..+.. ..+.++..+++++...+++..++-.+++
T Consensus 239 ~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~ 297 (406)
T PF02388_consen 239 NGKEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIA 297 (406)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777766422 4567788888888888888887766654
No 125
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=33.36 E-value=2.3e+02 Score=26.47 Aligned_cols=48 Identities=21% Similarity=0.336 Sum_probs=29.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRH 131 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQ 131 (440)
.+++-++.|++.++.|...+.++.+..+....++..+.+.++..-+++
T Consensus 91 ~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~ 138 (145)
T COG1730 91 SADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQ 138 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777776666666655555555555555444333
No 126
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=32.95 E-value=1.5e+02 Score=33.75 Aligned_cols=43 Identities=30% Similarity=0.499 Sum_probs=36.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
.++..+++|+++|..|..+|.+++.....++.+|..+..++..
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~ 468 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRD 468 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788889999999999999998888888888888888764
No 127
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=32.78 E-value=1.1e+02 Score=31.41 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=14.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQ 110 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQ 110 (440)
++++++.|+++++.|..|+..++.+.
T Consensus 37 l~~~~~~lr~e~~~l~~~~~~~~~~~ 62 (308)
T PF11382_consen 37 LEDQFDSLREENDELRAELDALQAQL 62 (308)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666655554443
No 128
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=32.71 E-value=2.2e+02 Score=28.27 Aligned_cols=32 Identities=31% Similarity=0.472 Sum_probs=22.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQ 116 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~q 116 (440)
+..+.+.|......|.+|+..||+.||.+..+
T Consensus 36 ~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~e 67 (228)
T PRK06800 36 IQKDHEELLAQQKSLHKELNQLRQEQQKLERE 67 (228)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777777777777666543
No 129
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=32.49 E-value=3.1e+02 Score=31.24 Aligned_cols=58 Identities=19% Similarity=0.312 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Q 013585 95 DKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFV 152 (440)
Q Consensus 95 Dn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLakavqnP~Fl~qLv 152 (440)
++..|.+||.+||-+.+.++.++..++..+-..|...++|..-+...-++--.|...-
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~ 137 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYS 137 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888888888888888888888888888888888766655444433333333
No 130
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=31.91 E-value=1.4e+02 Score=32.16 Aligned_cols=50 Identities=20% Similarity=0.394 Sum_probs=43.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQ 133 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQ 133 (440)
..+..|+.++.+.+.|..|+.+....|...+.+|..|.+-+...|--.|.
T Consensus 242 qvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh 291 (561)
T KOG1103|consen 242 QVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQH 291 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 35667888899999999999999999999999999999999998876653
No 131
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=31.85 E-value=3.8e+02 Score=24.67 Aligned_cols=44 Identities=23% Similarity=0.422 Sum_probs=21.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 128 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mE 128 (440)
+..+++.++.+...+..++...+++....+.....+.+.+..+.
T Consensus 107 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 107 LESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554444444444444444444444444444
No 132
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.84 E-value=1e+02 Score=30.82 Aligned_cols=77 Identities=17% Similarity=0.295 Sum_probs=47.4
Q ss_pred ceeecCCccCCcccccccccccCCCCCCCCCCccccccccCcCccchhccccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 32 WEFANEGFLRGQKHLLRSISRRKPAHGHGHQQSHQQNAQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQ 111 (440)
Q Consensus 32 wEFahe~F~RGq~~LL~~IkRrk~~~~~s~q~~~q~~~qsss~g~~~E~~k~~Le~EIe~LKrDn~~L~qEL~rLRQqQq 111 (440)
|=..||.|.+.+++|+..|.-..+..+ +.+.+ ...+.++|++..
T Consensus 12 yL~~hPeFf~~h~~Ll~~L~lph~~~~---------------tVSLv---------------------e~ql~r~R~~~~ 55 (218)
T COG3159 12 YLRQHPEFFIQHAELLEELRLPHPVAG---------------TVSLV---------------------ERQLARLRNRIR 55 (218)
T ss_pred HHHhCcHHHHhCHHHHHHcCCCCCCCC---------------eeehH---------------------HHHHHHHHHHHH
Confidence 446799999999999998875322111 11222 223445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013585 112 ASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQS 144 (440)
Q Consensus 112 ~~~~qLq~L~eRLq~mEqrQqQMmsFLakavqn 144 (440)
..+.+|+++.+.-+.-++-+.+++.....+++-
T Consensus 56 ~Le~~l~~L~~~A~~N~~lf~r~~~lq~~Ll~a 88 (218)
T COG3159 56 ELEEELAALMENARANERLFYRLHALQLDLLDA 88 (218)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 556666666666666677777777766666553
No 133
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=31.79 E-value=2.6e+02 Score=22.12 Aligned_cols=26 Identities=35% Similarity=0.598 Sum_probs=17.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQ 110 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQ 110 (440)
++.|+.+|.++...+..++.++....
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL 27 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKL 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777666554
No 134
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=31.66 E-value=1.9e+02 Score=30.90 Aligned_cols=71 Identities=18% Similarity=0.343 Sum_probs=44.3
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCchhHHHHH
Q 013585 82 KFGLEEEVERLKRDKNVLMQELVRLRQQQ---QASDSQLQTMVQRLQGMEQRHQQMMAFLAK-AVQSPGFLAQFV 152 (440)
Q Consensus 82 k~~Le~EIe~LKrDn~~L~qEL~rLRQqQ---q~~~~qLq~L~eRLq~mEqrQqQMmsFLak-avqnP~Fl~qLv 152 (440)
+..+..+++.|+++++.+..++..+++.. +....+...+.+++..+|.....+-.=+.. ++.=|.+++--|
T Consensus 37 ~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~~v 111 (425)
T PRK05431 37 RRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHDSV 111 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 34577889999999999999987644332 235556666666676666666554443332 233355555544
No 135
>PF15294 Leu_zip: Leucine zipper
Probab=30.65 E-value=1.2e+02 Score=31.20 Aligned_cols=44 Identities=20% Similarity=0.410 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 128 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mE 128 (440)
+..||.+|+.+|..|..-|..+.++.-..-.+=..++..|..+.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq 173 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQ 173 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888887777765544444444444444443
No 136
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=30.64 E-value=1.6e+02 Score=27.56 Aligned_cols=43 Identities=23% Similarity=0.313 Sum_probs=37.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
.|..+++.|++-...|.++|.+|-+....+..+++.+.++..+
T Consensus 98 ~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~ 140 (145)
T COG1730 98 FLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAA 140 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999888888887777644
No 137
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=29.99 E-value=2e+02 Score=32.25 Aligned_cols=36 Identities=14% Similarity=0.333 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 87 EEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQ 122 (440)
Q Consensus 87 ~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~e 122 (440)
.+++...+++..|.++...|+++...++.++..|+.
T Consensus 143 ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~ 178 (546)
T PF07888_consen 143 NQLEECQKEKEELLKENEQLEEEVEQLREEVERLEA 178 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444433333
No 138
>PRK14011 prefoldin subunit alpha; Provisional
Probab=29.76 E-value=2.6e+02 Score=25.89 Aligned_cols=40 Identities=10% Similarity=0.178 Sum_probs=26.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQR 123 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eR 123 (440)
.+++-++.+++..+.|..-..++....+....++..+..+
T Consensus 85 ~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~ 124 (144)
T PRK14011 85 DVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKE 124 (144)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777776666666666666666665544
No 139
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=29.71 E-value=84 Score=26.59 Aligned_cols=12 Identities=33% Similarity=0.393 Sum_probs=5.6
Q ss_pred cccccccCCCCC
Q 013585 167 KKRRIRQEGVAE 178 (440)
Q Consensus 167 KKRRlp~~~~~~ 178 (440)
+|=.++-.+.+.
T Consensus 39 ~kvkFts~E~p~ 50 (76)
T PF07334_consen 39 KKVKFTSPEVPE 50 (76)
T ss_pred ccCcCCCCCCCC
Confidence 444455555443
No 140
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=29.59 E-value=2.2e+02 Score=24.22 Aligned_cols=43 Identities=28% Similarity=0.423 Sum_probs=31.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
.+++-++.|++....|..++..+.++......++..+...++.
T Consensus 84 ~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 84 SLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677778888888888877777777777777777666654
No 141
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=29.55 E-value=2.7e+02 Score=21.64 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 88 EVERLKRDKNVLMQELVRLRQQQQASDSQLQ 118 (440)
Q Consensus 88 EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq 118 (440)
.++.|......|..|...|+.+...+..+++
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~ 57 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQ 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333333333
No 142
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=29.47 E-value=1.3e+02 Score=30.12 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 93 KRDKNVLMQELVRLRQQQQASDSQLQTMVQR 123 (440)
Q Consensus 93 KrDn~~L~qEL~rLRQqQq~~~~qLq~L~eR 123 (440)
....+.|.+||.+||-+.+....+|+.|.+|
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~r 90 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLNQVVER 90 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 143
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=29.26 E-value=3.8e+02 Score=27.56 Aligned_cols=30 Identities=33% Similarity=0.500 Sum_probs=14.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASD 114 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~ 114 (440)
+..|++.|.++...|.+|+..++.+...++
T Consensus 62 l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 62 LLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554444443333
No 144
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=29.24 E-value=1.7e+02 Score=32.08 Aligned_cols=48 Identities=27% Similarity=0.353 Sum_probs=34.2
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 83 FGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQM 134 (440)
Q Consensus 83 ~~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQM 134 (440)
..+++||.+||+|+..|.+=|.|.+-..+. ..+|.+||+...+.--++
T Consensus 416 v~~edeirrlkrdm~klkq~l~RN~gd~v~----s~~lqe~L~ev~~~Lasl 463 (486)
T KOG2185|consen 416 VEYEDEIRRLKRDMLKLKQMLNRNKGDLVV----SEALQERLKEVRKALASL 463 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccHHH----HHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999988874332 245666777765433333
No 145
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=29.11 E-value=2.5e+02 Score=23.06 Aligned_cols=42 Identities=24% Similarity=0.375 Sum_probs=32.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQ 125 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq 125 (440)
..++-++.|+.+...+..++.+|+.+...+..++..++..|.
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888888888888888888887777776664
No 146
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=28.86 E-value=2.9e+02 Score=30.56 Aligned_cols=42 Identities=10% Similarity=0.188 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 95 DKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMA 136 (440)
Q Consensus 95 Dn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMms 136 (440)
....|.++|..||++.+.+..+.+.++++|..+|...+++-.
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~ 118 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAE 118 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555556666555544444333
No 147
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=28.83 E-value=2.6e+02 Score=24.27 Aligned_cols=37 Identities=41% Similarity=0.627 Sum_probs=20.9
Q ss_pred cHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERL--KRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 128 (440)
Q Consensus 85 Le~EIe~L--KrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mE 128 (440)
++.+++.| +.|...|..+|.+++ .++..|..+++++.
T Consensus 54 lE~~l~~LPt~~dv~~L~l~l~el~-------G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 54 LETKLEHLPTRDDVHDLQLELAELR-------GELKELSARLQGVS 92 (106)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHH
Confidence 45555555 555555555555544 44556666666665
No 148
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=28.83 E-value=4.9e+02 Score=27.28 Aligned_cols=66 Identities=18% Similarity=0.239 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHh
Q 013585 88 EVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQ 153 (440)
Q Consensus 88 EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLakavqnP~Fl~qLvq 153 (440)
+..+..++...|..+|+.++++.+..-.+-..|.++|..+...|.++-+=|..+=.+-.=...+++
T Consensus 228 e~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~ 293 (306)
T PF04849_consen 228 ENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLH 293 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456677788888888888888888888889999999988898887777655444434444444
No 149
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=28.75 E-value=3.7e+02 Score=25.39 Aligned_cols=60 Identities=17% Similarity=0.310 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHh
Q 013585 90 ERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQ 153 (440)
Q Consensus 90 e~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLakavqnP~Fl~qLvq 153 (440)
+.|-.-...|..-|..|.++ +....+|+.|...+...+.+.+.++.-|..+-+ -|..++.
T Consensus 5 ~~L~~~d~~L~~~L~~l~~h-q~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~---~L~~~~~ 64 (188)
T PF10018_consen 5 EDLIEADDELSSALEELQEH-QENQARIQQLRAEIEELDEQIRDILKQLKEARK---ELRTLPD 64 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 44555556666676666544 456888999999999999887777777765553 5555653
No 150
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=28.55 E-value=2.4e+02 Score=31.68 Aligned_cols=43 Identities=30% Similarity=0.428 Sum_probs=38.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
.++.++..+|+++..|.-|+.+|+++...+..+|+.+...++.
T Consensus 152 ~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 152 ELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999998876544
No 151
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=28.54 E-value=2.4e+02 Score=31.06 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=37.8
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 82 KFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLA 139 (440)
Q Consensus 82 k~~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLa 139 (440)
...|..++.+|.++...+...+. +.++.+..|.-.|.+.+..|...+..+..||.
T Consensus 424 ~~~l~~~i~~l~~~i~~~~~rl~---~~e~~~~~qf~~m~~~~~~m~sq~~~L~q~l~ 478 (483)
T COG1345 424 TDSLNKQIKSLDKDIKSLDKRLE---AAEERYKTQFNTLDDMMTQMNSQSSYLTQQLV 478 (483)
T ss_pred ccchhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34578888888888888886544 44445667777777777777766666666654
No 152
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=28.48 E-value=3.1e+02 Score=26.87 Aligned_cols=48 Identities=19% Similarity=0.366 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 92 LKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLA 139 (440)
Q Consensus 92 LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLa 139 (440)
|.++.+.|.++|..=+.+++..+.....+..+|..=-.|+++++.+|.
T Consensus 139 LEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~eE~~k~K~~~l~Lv 186 (192)
T PF09727_consen 139 LEKERERLKQQLEQEKAQQKKLEKEHKKLVSQLEEERTKLKSFVLMLV 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555666666666666665566666666654
No 153
>PRK09343 prefoldin subunit beta; Provisional
Probab=28.36 E-value=2.5e+02 Score=24.94 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=23.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQ 125 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq 125 (440)
.++-...|+...+.+..+|.+|.++...++.++..++..|+
T Consensus 69 ~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~ 109 (121)
T PRK09343 69 KTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKIN 109 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566666666666666666665555555555444443
No 154
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=28.18 E-value=1e+02 Score=25.62 Aligned_cols=29 Identities=17% Similarity=0.302 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 93 KRDKNVLMQELVRLRQQQQASDSQLQTMV 121 (440)
Q Consensus 93 KrDn~~L~qEL~rLRQqQq~~~~qLq~L~ 121 (440)
+.|-.++...|.++|++...++.++..|+
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAALE 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666777777777666555555555444
No 155
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=28.15 E-value=4.4e+02 Score=24.99 Aligned_cols=42 Identities=17% Similarity=0.322 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 93 KRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQM 134 (440)
Q Consensus 93 KrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQM 134 (440)
......|...+..+..+...++.++..|+.+|..++.+...+
T Consensus 97 e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 97 EEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444445555555555555444433
No 156
>PRK14158 heat shock protein GrpE; Provisional
Probab=27.94 E-value=4.6e+02 Score=25.52 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=33.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
..+.+++.|+.+...|..|+..++.+...+...+.+...|...
T Consensus 37 ~~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~k 79 (194)
T PRK14158 37 AAADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQK 79 (194)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777888888888888888888888888888888877654
No 157
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=27.62 E-value=2.3e+02 Score=28.88 Aligned_cols=43 Identities=35% Similarity=0.380 Sum_probs=36.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
+|-.|+..+|.+.+.|.+||.-+-.+|+.++.-|-.++..+..
T Consensus 117 ~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~ 159 (254)
T KOG2196|consen 117 GLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLEL 159 (254)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4667888889999999999998888888888888888888755
No 158
>COG1422 Predicted membrane protein [Function unknown]
Probab=27.56 E-value=2e+02 Score=28.36 Aligned_cols=48 Identities=13% Similarity=0.293 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 86 EEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMM 135 (440)
Q Consensus 86 e~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMm 135 (440)
.++++++++...++..|..+.+++.. ...+..|++.=..+-+.|.+||
T Consensus 71 ~ekm~~~qk~m~efq~e~~eA~~~~d--~~~lkkLq~~qmem~~~Q~elm 118 (201)
T COG1422 71 QEKMKELQKMMKEFQKEFREAQESGD--MKKLKKLQEKQMEMMDDQRELM 118 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778777777777776665432 2333444433333334444443
No 159
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=27.52 E-value=28 Score=30.70 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 93 KRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFL 138 (440)
Q Consensus 93 KrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFL 138 (440)
......|..++.++...|. .|.+.|..+|..|..+-.+|
T Consensus 56 ~~~I~~L~~~v~~~~~~Q~-------~ld~~L~~ie~qQ~eLe~~L 94 (116)
T PF05064_consen 56 GEKISKLYSEVQKAESEQK-------RLDQELDFIEAQQKELEELL 94 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554 44445555666666555555
No 160
>KOG4057 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.50 E-value=4e+02 Score=25.65 Aligned_cols=59 Identities=15% Similarity=0.316 Sum_probs=48.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQ 143 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLakavq 143 (440)
++.||..+-.---...+||-+-|+-..+++.+-+++..-|..+|.+-..-+.||..+-.
T Consensus 17 iEkeI~~~mq~Ag~iiqeLgKEK~~~kn~e~qa~~F~ksit~VE~eLSaQi~YLtqV~t 75 (180)
T KOG4057|consen 17 IEKEIDEMMQCAGEIIQELGKEKQIGKNMEDQANNFKKSITQVENELSAQIQYLTQVCT 75 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55666666555666778999999999999999999999999999998888899987653
No 161
>PLN02320 seryl-tRNA synthetase
Probab=27.50 E-value=2.4e+02 Score=31.28 Aligned_cols=69 Identities=22% Similarity=0.271 Sum_probs=33.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCchhHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQ--QQQASDSQLQTMVQRLQGMEQRHQQMMAFLAK-AVQSPGFLAQFV 152 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQ--qQq~~~~qLq~L~eRLq~mEqrQqQMmsFLak-avqnP~Fl~qLv 152 (440)
.+..+++.|+.+++.+..++...++ +.+.+..++..+.+++..+|...+.+-.-|.. ++.=|.+++--|
T Consensus 104 ~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~h~~V 175 (502)
T PLN02320 104 ALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPDV 175 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 4566777777777777777643111 11233334445555555555554444332222 222344554444
No 162
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=27.47 E-value=1.2e+02 Score=27.37 Aligned_cols=37 Identities=19% Similarity=0.382 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 89 VERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQ 125 (440)
Q Consensus 89 Ie~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq 125 (440)
+..++.+...|..++.+++.+.......++++.+|++
T Consensus 13 ~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~ 49 (165)
T PF01025_consen 13 IEELEEELEELEKEIEELKERLLRLQAEFENYRKRLE 49 (165)
T ss_dssp HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444445444443
No 163
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=27.45 E-value=2.9e+02 Score=23.61 Aligned_cols=54 Identities=13% Similarity=0.273 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHhh
Q 013585 99 LMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQ 154 (440)
Q Consensus 99 L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLakavqnP~Fl~qLvqq 154 (440)
+..||.+.|.+......+|..|+.+..-+|.- +|+..+..+-=.|.=|..|++.
T Consensus 6 i~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~--EIv~~VR~~~mtp~eL~~~L~~ 59 (83)
T PF14193_consen 6 IRAEIEKTKEKIAELQARLKELEAQKTEAENL--EIVQMVRSMKMTPEELAAFLRA 59 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHcCCCHHHHHHHHHH
Confidence 44555555555555555566666665555532 4555554433456666666643
No 164
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=27.33 E-value=2.8e+02 Score=25.95 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013585 88 EVERLKRDKNVLMQELVR 105 (440)
Q Consensus 88 EIe~LKrDn~~L~qEL~r 105 (440)
++++|+.++..++..|.+
T Consensus 2 ~~~~Le~ek~~~~~rI~~ 19 (142)
T PF08781_consen 2 ECEELEEEKQRRRERIKK 19 (142)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 456666666666655443
No 165
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=27.30 E-value=2.9e+02 Score=25.23 Aligned_cols=52 Identities=8% Similarity=0.220 Sum_probs=23.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFL 138 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFL 138 (440)
+|.+-+..+-+..+.+...|..-|++. ..+++.|..+|+.+..-+++|-.=+
T Consensus 40 ~m~~A~~~v~kql~~vs~~l~~tKkhL---sqRId~vd~klDe~~ei~~~i~~eV 91 (126)
T PF07889_consen 40 SMSDAVASVSKQLEQVSESLSSTKKHL---SQRIDRVDDKLDEQKEISKQIKDEV 91 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344444444444444444444444432 2445555555555444444444433
No 166
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=27.24 E-value=1.6e+02 Score=29.71 Aligned_cols=26 Identities=38% Similarity=0.576 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013585 118 QTMVQRLQGMEQRHQQMMAFLAKAVQ 143 (440)
Q Consensus 118 q~L~eRLq~mEqrQqQMmsFLakavq 143 (440)
+.+..+|+.++.+++.|..|++++-+
T Consensus 39 ~~v~~~l~eLe~~~~el~~~i~~~k~ 64 (236)
T PF12269_consen 39 QKVRNRLQELEKRFKELEAIIARAKQ 64 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777778888888898886653
No 167
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=26.99 E-value=4.7e+02 Score=25.23 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 101 QELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFL 138 (440)
Q Consensus 101 qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFL 138 (440)
.++.+++++.......++.|.++...++.-.+.++..+
T Consensus 111 ~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im 148 (170)
T PRK13923 111 EQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIM 148 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555455555555555544444444444433
No 168
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=26.85 E-value=2e+02 Score=31.85 Aligned_cols=44 Identities=11% Similarity=0.235 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 88 EVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRH 131 (440)
Q Consensus 88 EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQ 131 (440)
..+.|.++.+.|++|+..+.++.+..+.+|+.++..+..++.++
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666555555566666666666666665444
No 169
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=26.68 E-value=5.2e+02 Score=25.57 Aligned_cols=50 Identities=18% Similarity=0.265 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 88 EVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAF 137 (440)
Q Consensus 88 EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsF 137 (440)
.+..++.+...+...+..|+.+...++.+...|+.+|..++.+...-+.-
T Consensus 210 ~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~ 259 (312)
T PF00038_consen 210 ELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREE 259 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555566666665555544443
No 170
>PRK14153 heat shock protein GrpE; Provisional
Probab=26.65 E-value=2.8e+02 Score=27.08 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 88 EVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQ 125 (440)
Q Consensus 88 EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq 125 (440)
+++.+..+...|..++..++.++..+...++++..|..
T Consensus 34 ~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~ 71 (194)
T PRK14153 34 EDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTA 71 (194)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666666666666666666666666654
No 171
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=26.59 E-value=2.6e+02 Score=30.91 Aligned_cols=49 Identities=16% Similarity=0.295 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 88 EVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMA 136 (440)
Q Consensus 88 EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMms 136 (440)
++++.|...+.+.+|+..+++.+.+++..-+.+++|++...-|++...+
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~k 396 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQK 396 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777787777777777777777777777665555554433
No 172
>PRK06798 fliD flagellar capping protein; Validated
Probab=26.48 E-value=2.3e+02 Score=30.60 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013585 99 LMQELVRLRQQQQASDSQL 117 (440)
Q Consensus 99 L~qEL~rLRQqQq~~~~qL 117 (440)
|..++.++..++..++.+|
T Consensus 384 l~~~i~~l~~~~~~~e~rl 402 (440)
T PRK06798 384 IDNRVSKLDLKITDIDTQN 402 (440)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 173
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=26.48 E-value=1.9e+02 Score=25.60 Aligned_cols=41 Identities=22% Similarity=0.261 Sum_probs=33.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRL 124 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRL 124 (440)
.++..++.|.+....|..++..++++...+...++.+..+.
T Consensus 98 ~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 138 (140)
T PRK03947 98 ILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEA 138 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47778888888888888888888888888888888777664
No 174
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=26.47 E-value=2.5e+02 Score=30.66 Aligned_cols=40 Identities=30% Similarity=0.486 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 87 EEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 87 ~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
-|++.|+.|...+..|+..|+.|....+.+++.++.++.+
T Consensus 274 ~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~ 313 (511)
T PF09787_consen 274 IELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEG 313 (511)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999998888888888888766
No 175
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=26.43 E-value=5.2e+02 Score=24.88 Aligned_cols=36 Identities=28% Similarity=0.435 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 91 RLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 91 ~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
.++.+...+...+..+++..+..+.++....+++..
T Consensus 60 ~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~ 95 (302)
T PF10186_consen 60 QLKREIEELRERLERLRERIERLRKRIEQKRERLEE 95 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444433
No 176
>smart00338 BRLZ basic region leucin zipper.
Probab=26.26 E-value=2.8e+02 Score=21.58 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 89 VERLKRDKNVLMQELVRLRQQQQASDSQLQT 119 (440)
Q Consensus 89 Ie~LKrDn~~L~qEL~rLRQqQq~~~~qLq~ 119 (440)
+..|......|..|...|+.+...+..++..
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~ 58 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEK 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333333333
No 177
>PRK14162 heat shock protein GrpE; Provisional
Probab=26.23 E-value=4.7e+02 Score=25.46 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 86 EEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 86 e~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
..+++.|+.+...|..++..++.+...+...++++..|...
T Consensus 38 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~k 78 (194)
T PRK14162 38 QNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAK 78 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666667777777777777677777777666543
No 178
>PRK14163 heat shock protein GrpE; Provisional
Probab=26.23 E-value=4.1e+02 Score=26.36 Aligned_cols=40 Identities=13% Similarity=0.113 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 87 EEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 87 ~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
.+.+.|+.....|..|+..++.+.......++++..|+..
T Consensus 40 ~~~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~k 79 (214)
T PRK14163 40 AATAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVER 79 (214)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666667777777777777777777777777654
No 179
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=26.13 E-value=5.2e+02 Score=24.11 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=11.1
Q ss_pred hhhhccccCCCceeec
Q 013585 13 SQVYHNLISKGFRKVD 28 (440)
Q Consensus 13 sSFvRQLN~YGFrKv~ 28 (440)
-.||++|..-||..-.
T Consensus 5 ~~~v~~Le~~Gft~~Q 20 (177)
T PF07798_consen 5 HKFVKRLEAAGFTEEQ 20 (177)
T ss_pred HHHHHHHHHCCCCHHH
Confidence 4678888777776543
No 180
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=26.05 E-value=3.9e+02 Score=25.26 Aligned_cols=36 Identities=11% Similarity=0.291 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 89 VERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRL 124 (440)
Q Consensus 89 Ie~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRL 124 (440)
+..|+.........|..|+.+....+.++..+.+.|
T Consensus 104 l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l 139 (194)
T PF08614_consen 104 LQELEKELSEKERRLAELEAELAQLEEKIKDLEEEL 139 (194)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 181
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=25.95 E-value=3.9e+02 Score=24.30 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 105 RLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFL 138 (440)
Q Consensus 105 rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFL 138 (440)
.|+.+....+..++...+.|+.++.+-+..-+-+
T Consensus 45 lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~ 78 (160)
T PF13094_consen 45 LLQEEIEKEEAALERDYEYLQELEKNAKALERER 78 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444443333333
No 182
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=25.95 E-value=3.5e+02 Score=28.84 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=13.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQ 109 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQq 109 (440)
+..+++.|+++...+..++.++++.
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~~ 356 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKKN 356 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544
No 183
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=25.78 E-value=1.3e+02 Score=29.73 Aligned_cols=18 Identities=39% Similarity=0.366 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013585 87 EEVERLKRDKNVLMQELV 104 (440)
Q Consensus 87 ~EIe~LKrDn~~L~qEL~ 104 (440)
+|+++||+++..|..++.
T Consensus 76 ~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 76 EENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 184
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=25.26 E-value=1.7e+02 Score=29.36 Aligned_cols=37 Identities=14% Similarity=0.294 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMV 121 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~ 121 (440)
+..+-+|+|..+..|..|+.+++++...++.++..|.
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~ 120 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLR 120 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999998888888777777666643
No 185
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=24.98 E-value=3.9e+02 Score=26.38 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 86 EEEVERLKRDKNVLMQELVRLRQQ 109 (440)
Q Consensus 86 e~EIe~LKrDn~~L~qEL~rLRQq 109 (440)
-.||..||..|+.|..|-.+||.-
T Consensus 54 l~EIR~LKe~NqkLqedNqELRdL 77 (195)
T PF10226_consen 54 LNEIRGLKEVNQKLQEDNQELRDL 77 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777777776666654
No 186
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=24.90 E-value=2.6e+02 Score=28.93 Aligned_cols=49 Identities=20% Similarity=0.483 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhc
Q 013585 88 EVERLKRDKNVLMQELVRLRQQQQASDSQLQ--------TMVQRLQGMEQRHQQMMAFLAKAVQ 143 (440)
Q Consensus 88 EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq--------~L~eRLq~mEqrQqQMmsFLakavq 143 (440)
-+..|...++.|..||.+|.+.+..++.+|. ++-.|+++-. .||..++|
T Consensus 5 ~L~eL~qrk~~Lq~eIe~LerR~~ri~~EmrtsFaG~Sq~lA~RVqGFk-------dYLvGsLQ 61 (283)
T PF11285_consen 5 ALKELEQRKQALQIEIEQLERRRERIEKEMRTSFAGQSQDLAIRVQGFK-------DYLVGSLQ 61 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHhhhH-------HHHHHHHH
Confidence 3456677777777777777777777777664 5566666654 77876665
No 187
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=24.89 E-value=1.9e+02 Score=24.41 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013585 96 KNVLMQELVRLRQQQQASDS 115 (440)
Q Consensus 96 n~~L~qEL~rLRQqQq~~~~ 115 (440)
.+.|..|+..++++...++.
T Consensus 69 ~~~l~~e~~~lk~~i~~le~ 88 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKELEE 88 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444433333333
No 188
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=24.88 E-value=5e+02 Score=24.51 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=34.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQ 129 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEq 129 (440)
.-..+++.|+.|+..|..+..+-++.....+.++..+++-+++-.+
T Consensus 47 ~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k 92 (158)
T PF09744_consen 47 EHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERK 92 (158)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566888999999999998888777777777777766666555443
No 189
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=24.83 E-value=2e+02 Score=25.50 Aligned_cols=39 Identities=33% Similarity=0.456 Sum_probs=27.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQ 122 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~e 122 (440)
.+-.++..||.....|..|=.+||-+.+.++..|..+.+
T Consensus 19 ~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 19 QLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355677777777777777777777777777777766655
No 190
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=24.80 E-value=2.6e+02 Score=23.74 Aligned_cols=43 Identities=30% Similarity=0.417 Sum_probs=32.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
.+++-++.|++....|...+.+++++......++..+...++.
T Consensus 74 s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~ 116 (120)
T PF02996_consen 74 SLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQ 116 (120)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888888888877777777666665554
No 191
>PRK14154 heat shock protein GrpE; Provisional
Probab=24.61 E-value=4.5e+02 Score=25.97 Aligned_cols=39 Identities=10% Similarity=0.256 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 88 EVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 88 EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
+++.|+.+...|..|+..++.+...+...++++..|.+.
T Consensus 53 ~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~k 91 (208)
T PRK14154 53 SREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIER 91 (208)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666666666666666666666543
No 192
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=24.59 E-value=1.5e+02 Score=27.37 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=30.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRL 124 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRL 124 (440)
++.-+++|+.+...-..||..||++.......-..|++||
T Consensus 92 yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 92 YEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 5566788888888888888888888777766666666653
No 193
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=24.46 E-value=1.9e+02 Score=22.55 Aligned_cols=11 Identities=9% Similarity=0.607 Sum_probs=7.1
Q ss_pred cCchhHHHHHh
Q 013585 143 QSPGFLAQFVQ 153 (440)
Q Consensus 143 qnP~Fl~qLvq 153 (440)
.+|.++..+..
T Consensus 52 ~~~~~ie~~AR 62 (80)
T PF04977_consen 52 NDPDYIEKVAR 62 (80)
T ss_pred CCHHHHHHHHH
Confidence 46677766664
No 194
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=24.46 E-value=2.9e+02 Score=29.64 Aligned_cols=51 Identities=22% Similarity=0.291 Sum_probs=31.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQM 134 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQM 134 (440)
.|++-+.+++.+|..|...|..+.|+....+.+-+.|.+.|..+-..|+.+
T Consensus 131 ~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L 181 (401)
T PF06785_consen 131 HLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQEL 181 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666777777777776666666666666666655555555555443
No 195
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=24.36 E-value=2.1e+02 Score=29.57 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=27.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 128 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mE 128 (440)
++.|++.-+.+-..|..++..|+++....+.++..|.+.+.++.
T Consensus 69 ~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglr 112 (389)
T PF06216_consen 69 KEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLR 112 (389)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45556666666666666666666666666666666666666543
No 196
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=24.35 E-value=3.2e+02 Score=23.61 Aligned_cols=44 Identities=27% Similarity=0.319 Sum_probs=31.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 128 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mE 128 (440)
|..+|..|+.+...+.+++..+|..-+..+.+-..-.+||..+.
T Consensus 29 Lss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~~ 72 (85)
T PRK09973 29 LASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQD 72 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 56677777777777777777777777777777777777777644
No 197
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=24.01 E-value=4.2e+02 Score=26.81 Aligned_cols=38 Identities=18% Similarity=0.367 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 91 RLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 128 (440)
Q Consensus 91 ~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mE 128 (440)
.++.....+..++..++.+....+.++...++++...+
T Consensus 141 ~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~ 178 (423)
T TIGR01843 141 TLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVIS 178 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444433
No 198
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=23.93 E-value=3.9e+02 Score=21.51 Aligned_cols=47 Identities=13% Similarity=0.208 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013585 98 VLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQS 144 (440)
Q Consensus 98 ~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLakavqn 144 (440)
.+..+|.+++..+.+.+..+..++.+....|..-..+-.-|.++-.+
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n 49 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSN 49 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666666665545554444444433
No 199
>PRK14140 heat shock protein GrpE; Provisional
Probab=23.88 E-value=5.9e+02 Score=24.77 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 87 EEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 87 ~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
.+++.|+.+...|..|+..++.+.......+++...|...
T Consensus 37 ~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~r 76 (191)
T PRK14140 37 ELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQK 76 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777788888888888888788888887777654
No 200
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=23.86 E-value=6.6e+02 Score=24.21 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013585 87 EEVERLKRDKNVLMQELVRLRQ 108 (440)
Q Consensus 87 ~EIe~LKrDn~~L~qEL~rLRQ 108 (440)
.++..|+.+.++|.+.+.++.+
T Consensus 100 k~l~~Lk~e~evL~qr~~kle~ 121 (201)
T PF13851_consen 100 KELKDLKWEHEVLEQRFEKLEQ 121 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433333
No 201
>smart00340 HALZ homeobox associated leucin zipper.
Probab=23.79 E-value=94 Score=23.86 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013585 88 EVERLKRDKNVLMQELVRLRQ 108 (440)
Q Consensus 88 EIe~LKrDn~~L~qEL~rLRQ 108 (440)
=-+.|..+|..|..||..||.
T Consensus 13 cce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 13 CCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345666677777777666653
No 202
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=23.78 E-value=6.8e+02 Score=28.51 Aligned_cols=56 Identities=16% Similarity=0.352 Sum_probs=28.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQAS-------DSQLQTMVQRLQGMEQRHQQMMAFLA 139 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~-------~~qLq~L~eRLq~mEqrQqQMmsFLa 139 (440)
.+..+++.|++++..|..++...-+..+.+ +.+|..++++|+..+.+.......|+
T Consensus 84 ~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe 146 (617)
T PF15070_consen 84 QLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLE 146 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355667777777777766654433333333 33444555555544444333334443
No 203
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.72 E-value=5.5e+02 Score=25.99 Aligned_cols=25 Identities=20% Similarity=0.505 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCchhHHHHHhhh
Q 013585 131 HQQMMAFLAKAVQSPGFLAQFVQQQ 155 (440)
Q Consensus 131 QqQMmsFLakavqnP~Fl~qLvqq~ 155 (440)
-..|++||.+.+..+..+..||..+
T Consensus 186 ~~~m~~~l~~e~e~~~~l~~Lv~AQ 210 (248)
T cd07619 186 SADMYSFVAKEIDYANYFQTLIEVQ 210 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3469999999999999999999764
No 204
>PRK14139 heat shock protein GrpE; Provisional
Probab=23.71 E-value=5.4e+02 Score=24.88 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=31.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
-+.+++.|+.+...|..|+..++.+.......+++...|+..
T Consensus 30 ~~~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~k 71 (185)
T PRK14139 30 AEDAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQE 71 (185)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777778888888887777777778887777654
No 205
>PLN02678 seryl-tRNA synthetase
Probab=23.45 E-value=3.2e+02 Score=29.72 Aligned_cols=71 Identities=15% Similarity=0.168 Sum_probs=39.7
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchhHHHHH
Q 013585 82 KFGLEEEVERLKRDKNVLMQELVRLRQQQ---QASDSQLQTMVQRLQGMEQRHQQMMAFLAKAV-QSPGFLAQFV 152 (440)
Q Consensus 82 k~~Le~EIe~LKrDn~~L~qEL~rLRQqQ---q~~~~qLq~L~eRLq~mEqrQqQMmsFLakav-qnP~Fl~qLv 152 (440)
+..+..+++.|+.+++.+..++..++... ..+..+++.|.+++..+|...+.+-.=|..++ +=|.+++--|
T Consensus 42 ~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~~~~V 116 (448)
T PLN02678 42 WRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLVHDSV 116 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 33567788899999998888886533221 23334455555666666555554444333322 2244444444
No 206
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=23.45 E-value=4.6e+02 Score=22.27 Aligned_cols=24 Identities=29% Similarity=0.686 Sum_probs=11.7
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHH
Q 013585 88 EVERLKR-DKNVLMQELVRLRQQQQ 111 (440)
Q Consensus 88 EIe~LKr-Dn~~L~qEL~rLRQqQq 111 (440)
+++++.+ +++.|.+|+..|+....
T Consensus 9 d~e~~~~e~k~~Li~ei~~LQ~sL~ 33 (80)
T PF10224_consen 9 DIEKLEKEEKEELIQEILELQDSLE 33 (80)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444433 35566666555554433
No 207
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3. The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins [].; GO: 0006886 intracellular protein transport, 0005622 intracellular; PDB: 1YD8_H 1WR6_C 1WRD_A 1O3X_A 1J2J_B 1NWM_X 1X79_A 1OXZ_A 1NAF_A.
Probab=23.41 E-value=2.7e+02 Score=23.47 Aligned_cols=75 Identities=15% Similarity=0.320 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHhhhhhhhhhh
Q 013585 86 EEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRI 162 (440)
Q Consensus 86 e~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLakavqnP~Fl~qLvqq~~~~~~~~ 162 (440)
..+++..+. +..|..|+...-............+.+-+..++.-|.+++.++.. +.+-.++..|++-++.-+.-+
T Consensus 10 ~~~l~~v~~-~~~lL~emL~~~~~~~~~~~~~el~~eL~~~ck~~r~~i~~li~~-~~dee~l~~lL~~ND~L~~~l 84 (100)
T PF03127_consen 10 RSELEKVKN-NAKLLNEMLDNYDPGEESSSDNELIQELYESCKSMRPRIQRLIEE-VEDEELLGELLQANDELNQAL 84 (100)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHTTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHHHHHHH
Confidence 345555555 445555555444444555566566777777788888888888865 455569999998776544444
No 208
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=23.37 E-value=3.5e+02 Score=23.40 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 87 EEVERLKRDKNVLMQELVRLRQQQQASDSQLQTM 120 (440)
Q Consensus 87 ~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L 120 (440)
=.+.++++++..|..|...|+.+....+.++.+-
T Consensus 23 ~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~ 56 (87)
T PF10883_consen 23 WKVKKAKKQNAKLQKENEQLKTEKAVAETQVKNA 56 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777776666666555555553
No 209
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=23.35 E-value=2.8e+02 Score=25.77 Aligned_cols=40 Identities=18% Similarity=0.363 Sum_probs=33.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRL 124 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRL 124 (440)
++.-.+.|...++.|..+|..|+.++..+..+|++|..-|
T Consensus 79 ~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~L 118 (131)
T KOG1760|consen 79 LDKLQDQLEEKKETLEKEIEELESELESISARMDELKKVL 118 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678888999999999999999998888888876554
No 210
>PHA01819 hypothetical protein
Probab=23.34 E-value=1.1e+02 Score=27.47 Aligned_cols=30 Identities=33% Similarity=0.534 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Q 013585 118 QTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQ 150 (440)
Q Consensus 118 q~L~eRLq~mEqrQqQMmsFLakavqnP~Fl~q 150 (440)
..|++|+-.+| |||-.||..-+|.|+-++|
T Consensus 73 vvleqri~sle---qq~ttflssq~qqpqqvqq 102 (129)
T PHA01819 73 VVLEQRIASLE---QQVTTFLSSQMQQPQQVQQ 102 (129)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHhhCchhhhh
Confidence 45667777777 6888999999998876554
No 211
>PRK07737 fliD flagellar capping protein; Validated
Probab=23.32 E-value=3e+02 Score=30.15 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 98 VLMQELVRLRQQQQASDSQLQTMVQRL 124 (440)
Q Consensus 98 ~L~qEL~rLRQqQq~~~~qLq~L~eRL 124 (440)
.|..++.++.+++..++.+|...++||
T Consensus 445 ~l~~~i~~l~~~i~~~~~rl~~~e~ry 471 (501)
T PRK07737 445 AIGKDLNQIETQIDRFQDRLKQIEDRY 471 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555554
No 212
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=23.27 E-value=2.2e+02 Score=24.33 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=28.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTM 120 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L 120 (440)
.++..++.|++....|..++.+++++...+...|+.+
T Consensus 91 ~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 91 FLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677778888888888888888888887777777654
No 213
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=23.23 E-value=2.6e+02 Score=26.00 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=16.7
Q ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 81 GKFGLEEEVERLKRDKNVLMQELVRLRQ 108 (440)
Q Consensus 81 ~k~~Le~EIe~LKrDn~~L~qEL~rLRQ 108 (440)
+...|..|++.|+.++..+..++..-|.
T Consensus 12 g~~~L~~EL~~L~~~r~~i~~~i~~Ar~ 39 (158)
T PRK05892 12 ARDHLEAELARLRARRDRLAVEVNDRGM 39 (158)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 3335677777777666666666544433
No 214
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=23.19 E-value=3.1e+02 Score=31.29 Aligned_cols=30 Identities=10% Similarity=0.197 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 96 KNVLMQELVRLRQQQQASDSQLQTMVQRLQ 125 (440)
Q Consensus 96 n~~L~qEL~rLRQqQq~~~~qLq~L~eRLq 125 (440)
...|..++.++.+++..++.+|+..++||.
T Consensus 602 ~~~l~~~i~~l~~~i~~~e~rl~~~e~rl~ 631 (661)
T PRK06664 602 VKGLDERIADNNKKIEEYEKKLESKERKLK 631 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555543
No 215
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=23.15 E-value=6.2e+02 Score=23.62 Aligned_cols=20 Identities=30% Similarity=0.574 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013585 90 ERLKRDKNVLMQELVRLRQQ 109 (440)
Q Consensus 90 e~LKrDn~~L~qEL~rLRQq 109 (440)
..|+.+.+.|..|+.+|+++
T Consensus 76 ~~lr~~~e~L~~eie~l~~~ 95 (177)
T PF07798_consen 76 AELRSENEKLQREIEKLRQE 95 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 216
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=22.96 E-value=1.7e+02 Score=28.50 Aligned_cols=18 Identities=17% Similarity=0.553 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013585 87 EEVERLKRDKNVLMQELV 104 (440)
Q Consensus 87 ~EIe~LKrDn~~L~qEL~ 104 (440)
.|++.+|+--+.....+.
T Consensus 105 ~Elq~mr~~ln~FR~qm~ 122 (179)
T PF14723_consen 105 QELQQMRRSLNSFREQMM 122 (179)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555554444444
No 217
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=22.63 E-value=4e+02 Score=22.64 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=29.7
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 82 KFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQ 125 (440)
Q Consensus 82 k~~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq 125 (440)
+..|..++..|+.....|+..+..++.++..++.+=+.|.+-+.
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~ 61 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIG 61 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566777778888888888888777777666665555444443
No 218
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=22.55 E-value=3e+02 Score=23.83 Aligned_cols=42 Identities=26% Similarity=0.293 Sum_probs=30.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQ 125 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq 125 (440)
.+++-++.|++....|...+..|.+.......++..+.++++
T Consensus 83 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 83 DAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466677777777777777777777777777777777666654
No 219
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=22.53 E-value=3.7e+02 Score=27.07 Aligned_cols=57 Identities=16% Similarity=0.228 Sum_probs=38.0
Q ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 81 GKFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAK 140 (440)
Q Consensus 81 ~k~~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLak 140 (440)
++..+..++..|+.++..|...|..++.++...+.. -.++.+.-|+|...-..||.+
T Consensus 186 ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r---~~E~r~ieEkk~~eei~fLk~ 242 (259)
T KOG4001|consen 186 EKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIR---SEEEREIEEKKMKEEIEFLKE 242 (259)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHH
Confidence 444566677777777777777777777776654432 345566677777777777754
No 220
>PRK14155 heat shock protein GrpE; Provisional
Probab=22.49 E-value=4.2e+02 Score=26.05 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=16.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQ 125 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq 125 (440)
+..+++.|+.+...|...+ ..+...+++...|.+
T Consensus 18 l~~~l~~le~e~~elkd~~-------lR~~AefeN~RKR~~ 51 (208)
T PRK14155 18 AAQEIEALKAEVAALKDQA-------LRYAAEAENTKRRAE 51 (208)
T ss_pred hHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 4445555555555444444 444444555555543
No 221
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=22.46 E-value=2.8e+02 Score=32.30 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=25.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASD 114 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~ 114 (440)
.++.|+++|.++...|..|+.+++++..+-.
T Consensus 808 d~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~ 838 (874)
T PRK05729 808 DVEAELARLEKELAKLEKEIERVEKKLSNEG 838 (874)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 4678888999999999999888888776543
No 222
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=22.40 E-value=3.4e+02 Score=33.35 Aligned_cols=44 Identities=32% Similarity=0.470 Sum_probs=33.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 128 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mE 128 (440)
+..++..+|.+......+|.++++..+++..++..+.+|+..+.
T Consensus 547 ~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~k 590 (1293)
T KOG0996|consen 547 LKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAK 590 (1293)
T ss_pred HHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777888888888888888888888777776544
No 223
>PRK15396 murein lipoprotein; Provisional
Probab=22.33 E-value=4.8e+02 Score=22.06 Aligned_cols=48 Identities=19% Similarity=0.244 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 87 EEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQM 134 (440)
Q Consensus 87 ~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQM 134 (440)
.+++.|..+.+.|..++..+++..+..+...++-.+.-...-+|--.+
T Consensus 25 ~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 25 AKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999998888888888766655555554443
No 224
>PF14645 Chibby: Chibby family
Probab=22.32 E-value=4e+02 Score=23.85 Aligned_cols=43 Identities=19% Similarity=0.150 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGM 127 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~m 127 (440)
...+..+|++++..|+.|-.-||-+++.+-.=|..-..++.-+
T Consensus 69 ~~~~~~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ 111 (116)
T PF14645_consen 69 DGEENQRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLL 111 (116)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777788888888777777766654444333333333333
No 225
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=22.20 E-value=6.5e+02 Score=24.24 Aligned_cols=41 Identities=12% Similarity=0.248 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 96 KNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMA 136 (440)
Q Consensus 96 n~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMms 136 (440)
...|..++..++.....++.++..|+.++..+..++..++.
T Consensus 101 ~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~a 141 (219)
T TIGR02977 101 AEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAI 141 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555555555555544433
No 226
>PRK14144 heat shock protein GrpE; Provisional
Probab=22.13 E-value=5.6e+02 Score=25.14 Aligned_cols=39 Identities=10% Similarity=0.131 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 88 EVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 88 EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
+++.|+.+...|..|+..++.+...+...+.+...|++.
T Consensus 46 ~~~~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~k 84 (199)
T PRK14144 46 SYTALEEQLTLAEQKAHENWEKSVRALAELENVRRRMER 84 (199)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666677777666643
No 227
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=22.12 E-value=4.2e+02 Score=23.95 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013585 107 RQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAV 142 (440)
Q Consensus 107 RQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLakav 142 (440)
......+...-.....|+..+.+||.++..-+-+++
T Consensus 57 ~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~ 92 (141)
T PF13874_consen 57 NDKLEELQKHDLETSARLEEARRRHQELSHRLLRVL 92 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334445556666666666555554444
No 228
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=21.74 E-value=3.7e+02 Score=26.61 Aligned_cols=63 Identities=22% Similarity=0.274 Sum_probs=39.4
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013585 82 KFGLEEEVERLKRDKNVLMQELVRLRQQ-QQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQS 144 (440)
Q Consensus 82 k~~Le~EIe~LKrDn~~L~qEL~rLRQq-Qq~~~~qLq~L~eRLq~mEqrQqQMmsFLakavqn 144 (440)
+..|..+-.+|.+.......++.+|+.. +..+++.+..|+..+.-.+...|+++.=|...+..
T Consensus 133 ~~el~~ek~kL~~q~~e~~e~lr~L~~~k~~r~Kn~~~~Lq~lI~Kwr~~~q~~l~eL~~~~~~ 196 (221)
T PF10376_consen 133 QQELEEEKRKLEKQVDEKEEELRRLKLVKQYRSKNDLEQLQSLIKKWRSASQEALYELQSEMSE 196 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555556666666666666666544 34477766677777777777777776666655544
No 229
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=21.70 E-value=2e+02 Score=28.86 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=14.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQ 110 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQ 110 (440)
||+|+.+++.++..|.+||..||...
T Consensus 98 LE~elr~~~~~~~~L~~Ev~~L~~DN 123 (248)
T PF08172_consen 98 LEEELRKQQQTISSLRREVESLRADN 123 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555544
No 230
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=21.53 E-value=2e+02 Score=29.14 Aligned_cols=12 Identities=42% Similarity=0.373 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 013585 98 VLMQELVRLRQQ 109 (440)
Q Consensus 98 ~L~qEL~rLRQq 109 (440)
.|.+|-.+||++
T Consensus 70 ~l~~EN~~Lr~e 81 (283)
T TIGR00219 70 NLEYENYKLRQE 81 (283)
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 231
>PF15456 Uds1: Up-regulated During Septation
Probab=21.49 E-value=4e+02 Score=24.14 Aligned_cols=26 Identities=38% Similarity=0.415 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 86 EEEVERLKRDKNVLMQELVRLRQQQQ 111 (440)
Q Consensus 86 e~EIe~LKrDn~~L~qEL~rLRQqQq 111 (440)
.+||+.||++...|..-+.-+|.+..
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~kl~ 46 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRRKLA 46 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888887777777766654
No 232
>PRK14145 heat shock protein GrpE; Provisional
Probab=21.39 E-value=7.8e+02 Score=24.11 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=35.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
....+++.|+.+...|..++..++.+...+...+++...|...
T Consensus 42 ~~~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~k 84 (196)
T PRK14145 42 QTVDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEK 84 (196)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888888888888888888888888888888888754
No 233
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=21.28 E-value=4.1e+02 Score=25.88 Aligned_cols=11 Identities=55% Similarity=0.643 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 013585 109 QQQASDSQLQT 119 (440)
Q Consensus 109 qQq~~~~qLq~ 119 (440)
-|+.++.+|.+
T Consensus 124 LQqssD~~lD~ 134 (179)
T PF13942_consen 124 LQQSSDSELDA 134 (179)
T ss_pred HHHhhHHHHHH
Confidence 33344443333
No 234
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=21.27 E-value=2.7e+02 Score=30.70 Aligned_cols=60 Identities=13% Similarity=0.340 Sum_probs=43.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQS 144 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLakavqn 144 (440)
+..+++.|..+...+...+.........+..++..+.+++..++..|..+...|..+-+.
T Consensus 353 lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~ 412 (569)
T PRK04778 353 LEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKD 412 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555666777888999999999999999888888766553
No 235
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=21.12 E-value=6.4e+02 Score=25.99 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013585 110 QQASDSQLQTMVQRLQGME 128 (440)
Q Consensus 110 Qq~~~~qLq~L~eRLq~mE 128 (440)
...++.++.++..||-.+|
T Consensus 223 ~~e~~~~i~e~~~rl~~l~ 241 (269)
T PF05278_consen 223 VKEIKERITEMKGRLGELE 241 (269)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 236
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=21.10 E-value=3.4e+02 Score=28.14 Aligned_cols=41 Identities=32% Similarity=0.471 Sum_probs=20.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRL 124 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRL 124 (440)
+|...++.|+.|...|...+..+..-.-.+....+.|...+
T Consensus 148 ~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~ 188 (312)
T smart00787 148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEEL 188 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666555544433333333333333333
No 237
>PRK10698 phage shock protein PspA; Provisional
Probab=20.99 E-value=4.3e+02 Score=25.84 Aligned_cols=43 Identities=14% Similarity=0.187 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 96 KNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFL 138 (440)
Q Consensus 96 n~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFL 138 (440)
...|..++...+.....++.++..|+.+|..++.|+..++.-.
T Consensus 101 ~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~ 143 (222)
T PRK10698 101 IATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRH 143 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444455555555555555555555544433
No 238
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=20.96 E-value=3.6e+02 Score=29.12 Aligned_cols=51 Identities=14% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh
Q 013585 92 LKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQ-------GMEQRHQQMMAFLAKAV 142 (440)
Q Consensus 92 LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq-------~mEqrQqQMmsFLakav 142 (440)
|+.....|..++.++..++..++.+|..+++||. .+=.+-++..+||...+
T Consensus 404 l~~~~~~l~~~i~~l~~~i~~~~~rl~~~e~rl~~qF~ame~~~s~mns~~s~L~~q~ 461 (462)
T PRK08032 404 IKTATDGVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLNSTSSYLTQQF 461 (462)
T ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 239
>PRK03918 chromosome segregation protein; Provisional
Probab=20.93 E-value=3.5e+02 Score=30.71 Aligned_cols=36 Identities=6% Similarity=0.274 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 89 VERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRL 124 (440)
Q Consensus 89 Ie~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRL 124 (440)
+..++.+...+..++..++++....+.+++.+.+++
T Consensus 195 l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l 230 (880)
T PRK03918 195 IKEKEKELEEVLREINEISSELPELREELEKLEKEV 230 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555554444444444444333
No 240
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=20.89 E-value=4.4e+02 Score=24.95 Aligned_cols=38 Identities=21% Similarity=0.407 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 97 NVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQM 134 (440)
Q Consensus 97 ~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQM 134 (440)
..+..++..++++......++..|...|..++.+-..+
T Consensus 94 ~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~ 131 (221)
T PF04012_consen 94 ADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEEL 131 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444333
No 241
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=20.77 E-value=4.8e+02 Score=25.04 Aligned_cols=59 Identities=19% Similarity=0.368 Sum_probs=37.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhc
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME--------QRHQQMMAFLAKAVQ 143 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mE--------qrQqQMmsFLakavq 143 (440)
|-+.++..+..|..|..||.+|+.+...+..+|..=+.+.+.-+ .-|..|+..-..++.
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll~LWr~v~~ 152 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLLSLWREVVA 152 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHH
Confidence 45566666788888888888877777776666655444443322 234567777766663
No 242
>PRK10722 hypothetical protein; Provisional
Probab=20.76 E-value=3.5e+02 Score=27.59 Aligned_cols=27 Identities=41% Similarity=0.420 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 100 MQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 100 ~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
..+|.+||||+..++.+|....+||..
T Consensus 175 D~qlD~lrqq~~~Lq~~L~~t~rKLEn 201 (247)
T PRK10722 175 DSELDALRQQQQRLQYQLELTTRKLEN 201 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554444
No 243
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=20.61 E-value=5e+02 Score=21.56 Aligned_cols=50 Identities=18% Similarity=0.303 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQ---------------ASDSQLQTMVQRLQGMEQRHQQM 134 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq---------------~~~~qLq~L~eRLq~mEqrQqQM 134 (440)
.+..|++|+++|-.|...|.-|.+..+ .++..+..|...++...+.-.+.
T Consensus 5 qe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a 69 (75)
T PF07989_consen 5 QEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEA 69 (75)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 244
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=20.60 E-value=5.7e+02 Score=22.22 Aligned_cols=31 Identities=35% Similarity=0.503 Sum_probs=20.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDS 115 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~ 115 (440)
+..+.-++++.+..|.+|+..|..+...-..
T Consensus 22 v~~~~l~l~~~n~el~~el~~l~~~~~~~~~ 52 (106)
T PF05837_consen 22 VEKKRLRLKRRNQELAQELLELAEKQKSQRE 52 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3444556677778888888777776554433
No 245
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=20.47 E-value=3.9e+02 Score=25.77 Aligned_cols=40 Identities=18% Similarity=0.360 Sum_probs=32.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRL 124 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRL 124 (440)
+..++..|+..+..|..|+.+|++++..+......|..=+
T Consensus 109 ~~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im 148 (170)
T PRK13923 109 LSEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIM 148 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888999999999999999999888888877765444
No 246
>PF15058 Speriolin_N: Speriolin N terminus
Probab=20.43 E-value=1.2e+02 Score=29.90 Aligned_cols=27 Identities=30% Similarity=0.544 Sum_probs=20.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQ 110 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQ 110 (440)
++...|+||-++|+.|+..|.-+|+.|
T Consensus 9 GlrhqierLv~ENeeLKKlVrLirEN~ 35 (200)
T PF15058_consen 9 GLRHQIERLVRENEELKKLVRLIRENH 35 (200)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 456788888888888888877777655
No 247
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=20.26 E-value=3.2e+02 Score=32.31 Aligned_cols=31 Identities=16% Similarity=0.285 Sum_probs=25.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASD 114 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~ 114 (440)
.++.|+++|.++.+.|..|+.+++++..+-.
T Consensus 926 d~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~ 956 (995)
T PTZ00419 926 DLKKELAKLEKKLAKLQKSLESYLKKISIPN 956 (995)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 4678899999999999999988888765544
No 248
>PRK14157 heat shock protein GrpE; Provisional
Probab=20.25 E-value=5.8e+02 Score=25.64 Aligned_cols=36 Identities=14% Similarity=0.138 Sum_probs=24.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQT 119 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~ 119 (440)
.++.+++.|+.+...+...+.|++-+.++++.+.+.
T Consensus 81 ~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~r 116 (227)
T PRK14157 81 DTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQK 116 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777777777766666666655544
No 249
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=20.18 E-value=2.5e+02 Score=21.70 Aligned_cols=17 Identities=29% Similarity=0.591 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013585 115 SQLQTMVQRLQGMEQRH 131 (440)
Q Consensus 115 ~qLq~L~eRLq~mEqrQ 131 (440)
.+|.+|..||+.+|.++
T Consensus 30 ~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 30 QKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 34677777777777654
No 250
>PRK00846 hypothetical protein; Provisional
Probab=20.14 E-value=3.1e+02 Score=23.19 Aligned_cols=12 Identities=17% Similarity=-0.089 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHh
Q 013585 131 HQQMMAFLAKAV 142 (440)
Q Consensus 131 QqQMmsFLakav 142 (440)
|++.+.-|.+.+
T Consensus 39 qq~~I~~L~~ql 50 (77)
T PRK00846 39 ARLTGARNAELI 50 (77)
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 251
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=20.08 E-value=4.7e+02 Score=24.46 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 100 MQELVRLRQQQQASDSQLQTMVQRLQGMEQRH 131 (440)
Q Consensus 100 ~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQ 131 (440)
..||++|||...++++.=-+..=|+..++|+.
T Consensus 46 reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~ 77 (135)
T KOG4196|consen 46 REEVVRLKQRRRTLKNRGYAQSCRVKRVQQKH 77 (135)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 46788888888888777666666655554443
Done!