Query 013585
Match_columns 440
No_of_seqs 248 out of 780
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 13:20:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013585.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013585hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ldu_A Heat shock factor prote 99.8 7E-21 2.4E-25 166.7 3.4 55 2-56 54-123 (125)
2 1hks_A Heat-shock transcriptio 99.8 5.7E-21 2E-25 162.4 1.2 53 1-53 40-106 (106)
3 3hts_B Heat shock transcriptio 99.5 6.1E-15 2.1E-19 125.6 1.2 37 2-38 49-100 (102)
4 2jee_A YIIU; FTSZ, septum, coi 84.5 2.9 0.0001 34.3 7.1 25 86-110 26-50 (81)
5 2yy0_A C-MYC-binding protein; 76.5 4.7 0.00016 30.4 5.3 31 87-117 19-49 (53)
6 3m48_A General control protein 74.5 3.6 0.00012 28.7 3.8 25 84-108 4-28 (33)
7 3he5_B Synzip2; heterodimeric 73.4 9.1 0.00031 28.3 5.9 44 85-128 8-51 (52)
8 2wt7_A Proto-oncogene protein 73.1 7.2 0.00025 29.8 5.7 34 84-117 27-60 (63)
9 1kd8_B GABH BLL, GCN4 acid bas 72.3 6.9 0.00023 27.7 4.8 28 84-111 5-32 (36)
10 1t2k_D Cyclic-AMP-dependent tr 70.6 7.8 0.00027 29.3 5.3 34 84-117 26-59 (61)
11 3tnu_B Keratin, type II cytosk 68.1 34 0.0012 29.2 9.5 56 85-140 34-89 (129)
12 2wt7_B Transcription factor MA 67.5 11 0.00037 31.4 6.0 40 87-126 48-87 (90)
13 3c3g_A Alpha/beta peptide with 67.4 6.5 0.00022 27.4 3.8 25 84-108 4-28 (33)
14 1deb_A APC protein, adenomatou 67.4 23 0.00077 26.9 7.1 39 85-123 8-46 (54)
15 1uo4_A General control protein 67.1 6.6 0.00022 27.5 3.8 25 84-108 5-29 (34)
16 3c3f_A Alpha/beta peptide with 66.5 6.9 0.00024 27.4 3.8 25 84-108 5-29 (34)
17 2yy0_A C-MYC-binding protein; 65.3 11 0.00039 28.3 5.2 25 85-109 24-48 (53)
18 1kd8_A GABH AIV, GCN4 acid bas 65.1 12 0.00041 26.5 4.8 28 84-111 5-32 (36)
19 2oxj_A Hybrid alpha/beta pepti 64.8 7.8 0.00027 27.1 3.8 25 84-108 5-29 (34)
20 3e98_A GAF domain of unknown f 64.4 21 0.00072 33.9 8.2 79 32-146 39-117 (252)
21 3hnw_A Uncharacterized protein 63.9 28 0.00095 30.6 8.3 31 88-118 69-99 (138)
22 2wq1_A General control protein 63.3 8.7 0.0003 26.7 3.8 25 84-108 4-28 (33)
23 1a93_B MAX protein, coiled coi 63.0 10 0.00035 26.6 4.2 29 92-120 5-33 (34)
24 2hy6_A General control protein 62.7 8.9 0.0003 26.8 3.8 25 84-108 5-29 (34)
25 2bni_A General control protein 62.0 9.3 0.00032 26.7 3.8 25 84-108 5-29 (34)
26 3tnu_A Keratin, type I cytoske 60.8 33 0.0011 29.4 8.1 58 85-142 36-93 (131)
27 4dzn_A Coiled-coil peptide CC- 60.6 11 0.00037 25.7 3.8 24 85-108 7-30 (33)
28 3q8t_A Beclin-1; autophagy, AT 59.2 48 0.0016 27.4 8.4 48 84-131 8-55 (96)
29 3hnw_A Uncharacterized protein 59.1 34 0.0012 30.1 7.9 46 85-130 80-125 (138)
30 1hjb_A Ccaat/enhancer binding 59.0 13 0.00045 30.6 4.9 31 85-115 41-71 (87)
31 1ci6_A Transcription factor AT 58.8 16 0.00054 28.0 5.1 32 84-115 27-58 (63)
32 1wt6_A Myotonin-protein kinase 58.7 21 0.00072 29.3 6.0 33 94-126 24-56 (81)
33 1jnm_A Proto-oncogene C-JUN; B 58.2 7.1 0.00024 29.7 3.0 34 84-117 26-59 (62)
34 3i00_A HIP-I, huntingtin-inter 56.2 73 0.0025 27.5 9.4 35 85-119 13-47 (120)
35 4etp_A Kinesin-like protein KA 55.9 36 0.0012 34.5 8.6 52 89-140 5-56 (403)
36 3uux_B Mitochondrial division 55.3 57 0.0019 31.6 9.3 67 89-155 151-217 (242)
37 2jee_A YIIU; FTSZ, septum, coi 55.2 85 0.0029 25.7 9.4 35 85-119 11-45 (81)
38 1uix_A RHO-associated kinase; 53.6 85 0.0029 25.1 9.7 55 90-144 14-68 (71)
39 2dgc_A Protein (GCN4); basic d 53.2 10 0.00035 29.2 3.2 27 84-110 34-60 (63)
40 4dzn_A Coiled-coil peptide CC- 51.7 30 0.001 23.6 4.8 20 88-107 3-22 (33)
41 2r2v_A GCN4 leucine zipper; co 50.6 19 0.00064 25.2 3.8 25 84-108 5-29 (34)
42 1nkp_B MAX protein, MYC proto- 46.8 21 0.00071 28.2 4.2 33 87-119 47-79 (83)
43 3u1c_A Tropomyosin alpha-1 cha 46.4 63 0.0022 26.7 7.2 30 94-123 37-66 (101)
44 3oja_B Anopheles plasmodium-re 45.9 1.2E+02 0.0042 30.8 10.8 21 90-110 512-532 (597)
45 2w83_C C-JUN-amino-terminal ki 45.0 27 0.00094 28.4 4.6 43 82-124 32-74 (77)
46 3oja_B Anopheles plasmodium-re 44.6 90 0.0031 31.8 9.5 14 98-111 506-519 (597)
47 1jcd_A Major outer membrane li 43.9 68 0.0023 24.2 6.3 42 85-126 9-50 (52)
48 2v66_B Nuclear distribution pr 43.3 1.6E+02 0.0054 25.3 9.5 44 96-139 37-80 (111)
49 1nkp_A C-MYC, MYC proto-oncoge 43.1 41 0.0014 27.2 5.5 34 87-120 52-85 (88)
50 1gu4_A CAAT/enhancer binding p 42.3 18 0.00063 29.1 3.2 28 85-112 41-68 (78)
51 3oja_A Leucine-rich immune mol 41.4 84 0.0029 31.4 8.6 34 91-124 432-465 (487)
52 2zqm_A Prefoldin beta subunit 41.0 86 0.0029 25.4 7.2 44 84-127 67-110 (117)
53 2xdj_A Uncharacterized protein 40.0 1.4E+02 0.0049 24.1 8.2 43 96-138 22-64 (83)
54 4emc_A Monopolin complex subun 39.8 89 0.003 29.2 7.8 36 89-124 22-57 (190)
55 1wt6_A Myotonin-protein kinase 39.3 1.2E+02 0.0042 24.8 7.6 45 82-126 26-70 (81)
56 3a7p_A Autophagy protein 16; c 39.2 2E+02 0.007 25.9 9.8 24 86-109 67-90 (152)
57 3na7_A HP0958; flagellar bioge 38.8 1.4E+02 0.0047 28.0 9.2 46 85-130 37-82 (256)
58 2wt7_B Transcription factor MA 38.8 41 0.0014 28.0 4.8 37 84-120 52-88 (90)
59 3na7_A HP0958; flagellar bioge 38.1 1E+02 0.0034 28.9 8.1 15 275-289 214-228 (256)
60 1lwu_C Fibrinogen gamma chain; 38.1 77 0.0026 31.6 7.6 11 115-125 33-43 (323)
61 4etp_A Kinesin-like protein KA 37.8 92 0.0032 31.5 8.3 44 85-128 8-51 (403)
62 1go4_E MAD1 (mitotic arrest de 37.6 61 0.0021 27.4 5.8 34 86-119 11-44 (100)
63 1x79_B RAB GTPase binding effe 37.4 1.6E+02 0.0053 25.4 8.4 43 84-129 17-59 (112)
64 1uii_A Geminin; human, DNA rep 37.2 83 0.0028 25.9 6.3 25 87-111 46-70 (83)
65 3efg_A Protein SLYX homolog; x 36.4 58 0.002 26.1 5.3 44 85-128 19-62 (78)
66 2v71_A Nuclear distribution pr 36.0 2E+02 0.0067 26.8 9.5 43 96-138 90-132 (189)
67 1s1c_X RHO-associated, coiled- 35.7 1.7E+02 0.0057 23.4 9.6 14 132-145 56-69 (71)
68 4ani_A Protein GRPE; chaperone 35.3 1.3E+02 0.0045 28.3 8.3 40 87-126 59-98 (213)
69 4gkw_A Spindle assembly abnorm 33.9 1.6E+02 0.0053 26.5 8.0 40 87-126 46-85 (167)
70 1wlq_A Geminin; coiled-coil; 2 33.8 1.1E+02 0.0037 25.2 6.5 25 87-111 38-62 (83)
71 1nlw_A MAD protein, MAX dimeri 33.8 50 0.0017 26.3 4.5 32 87-118 47-78 (80)
72 3ljm_A Coil Ser L9C; de novo d 33.6 56 0.0019 22.0 3.9 24 105-128 5-28 (31)
73 4e61_A Protein BIM1; EB1-like 33.5 1.7E+02 0.0058 25.0 7.9 41 98-138 8-48 (106)
74 1fxk_A Prefoldin; archaeal pro 33.1 95 0.0032 24.8 6.2 43 84-126 62-104 (107)
75 3u06_A Protein claret segregat 33.0 1.4E+02 0.0047 30.4 8.6 50 92-141 8-57 (412)
76 3a2a_A Voltage-gated hydrogen 32.9 1.2E+02 0.004 23.5 6.1 34 86-119 10-43 (58)
77 1g6u_A Domain swapped dimer; d 32.8 1.4E+02 0.0049 21.7 6.7 8 100-107 6-13 (48)
78 2wvr_A Geminin; DNA replicatio 32.7 1.3E+02 0.0044 28.5 7.7 23 88-110 116-138 (209)
79 1gd2_E Transcription factor PA 32.6 47 0.0016 26.3 4.0 34 85-118 34-67 (70)
80 3mq7_A Bone marrow stromal ant 32.4 68 0.0023 28.1 5.3 23 97-119 74-96 (121)
81 3ra3_B P2F; coiled coil domain 32.3 36 0.0012 22.5 2.7 19 89-107 2-20 (28)
82 1a93_B MAX protein, coiled coi 32.2 32 0.0011 24.1 2.6 21 86-106 13-33 (34)
83 2v71_A Nuclear distribution pr 32.1 2.5E+02 0.0084 26.1 9.5 21 90-110 98-118 (189)
84 1dh3_A Transcription factor CR 31.7 33 0.0011 25.7 2.9 24 85-108 27-50 (55)
85 1t6f_A Geminin; coiled-coil, c 31.6 80 0.0027 22.4 4.6 25 87-111 7-31 (37)
86 3m91_A Proteasome-associated A 31.6 1.2E+02 0.004 22.7 5.9 36 85-120 14-49 (51)
87 2xu6_A MDV1 coiled coil; prote 30.8 74 0.0025 25.6 4.9 37 87-123 28-64 (72)
88 2v66_B Nuclear distribution pr 30.5 2.6E+02 0.0088 23.9 9.6 51 90-140 6-60 (111)
89 3u59_A Tropomyosin beta chain; 29.9 1.4E+02 0.0047 24.4 6.7 38 88-125 31-68 (101)
90 1go4_E MAD1 (mitotic arrest de 29.6 65 0.0022 27.3 4.7 26 85-110 17-42 (100)
91 1l8d_A DNA double-strand break 28.5 1.2E+02 0.004 24.6 6.1 37 88-124 4-40 (112)
92 3s4r_A Vimentin; alpha-helix, 28.2 1.1E+02 0.0038 25.0 5.8 52 84-135 20-76 (93)
93 2fcw_A Alpha-2-macroglobulin r 27.7 2.9E+02 0.01 23.7 9.0 58 85-142 22-94 (109)
94 1fxk_C Protein (prefoldin); ar 27.6 2E+02 0.007 23.9 7.6 44 84-127 85-128 (133)
95 3uux_B Mitochondrial division 27.4 1.2E+02 0.0042 29.3 6.7 55 84-138 160-214 (242)
96 1wle_A Seryl-tRNA synthetase; 27.0 2.5E+02 0.0086 29.3 9.6 57 82-138 79-146 (501)
97 3o0z_A RHO-associated protein 26.9 3.7E+02 0.013 24.6 9.5 55 89-143 92-149 (168)
98 2aze_A Transcription factor DP 26.5 1.8E+02 0.0063 26.3 7.3 19 87-105 5-23 (155)
99 1fxk_C Protein (prefoldin); ar 26.4 1.5E+02 0.0052 24.7 6.5 40 84-123 92-131 (133)
100 3t97_C Nuclear pore glycoprote 26.2 33 0.0011 26.8 2.1 15 97-111 15-29 (64)
101 3swy_A Cyclic nucleotide-gated 25.9 2E+02 0.0068 21.1 7.1 42 85-129 3-44 (46)
102 2dq0_A Seryl-tRNA synthetase; 25.4 1.7E+02 0.0058 30.1 7.8 57 82-138 40-99 (455)
103 2dfs_A Myosin-5A; myosin-V, in 25.0 2.3E+02 0.008 32.3 9.5 26 101-126 991-1016(1080)
104 3u1c_A Tropomyosin alpha-1 cha 24.9 2.6E+02 0.009 22.9 7.6 36 103-138 32-67 (101)
105 3kqg_A Langerin, C-type lectin 24.7 1.1E+02 0.0038 26.0 5.5 15 85-99 4-18 (182)
106 2gkw_A TNF receptor-associated 24.7 1.1E+02 0.0036 27.3 5.5 31 98-128 4-34 (192)
107 4h22_A Leucine-rich repeat fli 24.6 1.9E+02 0.0067 24.6 6.7 34 82-115 25-58 (103)
108 3u06_A Protein claret segregat 24.2 2.1E+02 0.0073 29.0 8.3 32 97-128 6-37 (412)
109 2aze_B Transcription factor E2 24.1 1.3E+02 0.0046 25.2 5.7 31 97-127 9-39 (106)
110 1lwu_C Fibrinogen gamma chain; 23.8 2.3E+02 0.0079 28.1 8.2 44 85-128 10-53 (323)
111 2zdi_C Prefoldin subunit alpha 23.7 1.2E+02 0.0041 26.2 5.5 45 84-128 95-139 (151)
112 3a7p_A Autophagy protein 16; c 23.5 4.1E+02 0.014 24.0 9.3 44 85-128 73-123 (152)
113 3plt_A Sphingolipid long chain 23.1 2.6E+02 0.009 26.8 8.1 43 85-128 102-144 (234)
114 3tnu_B Keratin, type II cytosk 23.1 3.4E+02 0.012 22.9 8.1 27 84-110 47-73 (129)
115 1joc_A EEA1, early endosomal a 23.0 2E+02 0.0068 24.4 6.7 34 95-128 5-38 (125)
116 4emc_A Monopolin complex subun 22.9 2.5E+02 0.0086 26.2 7.7 38 86-123 26-63 (190)
117 3qne_A Seryl-tRNA synthetase, 22.7 2.4E+02 0.0082 29.5 8.4 71 82-152 42-116 (485)
118 3ghg_A Fibrinogen alpha chain; 22.3 2.1E+02 0.0071 30.7 7.8 61 85-145 115-196 (562)
119 2aze_B Transcription factor E2 22.3 1.4E+02 0.0047 25.1 5.4 38 86-123 5-42 (106)
120 3q0x_A Centriole protein; cent 22.3 3.1E+02 0.011 26.1 8.4 42 83-124 167-208 (228)
121 4gif_A Polycystic kidney disea 22.2 2.4E+02 0.0081 20.8 6.0 36 95-130 8-43 (45)
122 3u59_A Tropomyosin beta chain; 22.1 3.2E+02 0.011 22.2 7.6 18 112-129 41-58 (101)
123 1deq_A Fibrinogen (alpha chain 21.8 3.9E+02 0.013 27.5 9.5 40 85-124 58-97 (390)
124 1gu4_A CAAT/enhancer binding p 21.7 69 0.0024 25.8 3.3 31 96-126 38-68 (78)
125 3cvf_A Homer-3, homer protein 21.6 1.8E+02 0.0062 23.5 5.7 52 92-143 4-55 (79)
126 3ra3_A P1C; coiled coil domain 21.3 61 0.0021 21.4 2.3 20 91-110 4-23 (28)
127 1deq_A Fibrinogen (alpha chain 21.1 2.8E+02 0.0097 28.5 8.3 41 84-124 117-157 (390)
128 1lrz_A FEMA, factor essential 20.9 3.1E+02 0.01 27.1 8.5 49 85-133 245-299 (426)
129 3nkz_A Flagellar protein FLIT; 20.8 96 0.0033 26.6 4.2 74 99-172 32-106 (123)
130 3m9b_A Proteasome-associated A 20.7 94 0.0032 30.2 4.5 18 137-154 90-107 (251)
131 2dfs_A Myosin-5A; myosin-V, in 20.5 3.4E+02 0.012 30.9 9.7 43 95-137 978-1020(1080)
No 1
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.80 E-value=7e-21 Score=166.72 Aligned_cols=55 Identities=40% Similarity=0.524 Sum_probs=51.5
Q ss_pred hhhchhhhhhh----hhhhccccCCCceeec-----------CCCceeecCCccCCcccccccccccCCC
Q 013585 2 EQKGEMGKEFK----SQVYHNLISKGFRKVD-----------PDRWEFANEGFLRGQKHLLRSISRRKPA 56 (440)
Q Consensus 2 ~~k~vLPkyFK----sSFvRQLN~YGFrKv~-----------~d~wEFahe~F~RGq~~LL~~IkRrk~~ 56 (440)
|+++|||+||| +||+||||+||||||. ++.|||+|++|+||+++||.+|+||+++
T Consensus 54 F~~~vLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~~~~~~~~~~~~eF~H~~F~Rg~~~LL~~IkRk~~~ 123 (125)
T 2ldu_A 54 FAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTS 123 (125)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHHTTCEEEECSCCSSSSSCSSCCEEEECTTCBTTBGGGTTTSCCCTTS
T ss_pred HHHHHhHHhcCCCcHHHHHHHhcccCceEEeeccccccccCCCCccEEECccccCCCHHHHhhCcCCCCC
Confidence 78999999999 9999999999999994 4689999999999999999999999865
No 2
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Probab=99.80 E-value=5.7e-21 Score=162.41 Aligned_cols=53 Identities=28% Similarity=0.388 Sum_probs=49.8
Q ss_pred Chhhchhhhhhh----hhhhccccCCCceeec----------CCCceeecCCccCCccccccccccc
Q 013585 1 MEQKGEMGKEFK----SQVYHNLISKGFRKVD----------PDRWEFANEGFLRGQKHLLRSISRR 53 (440)
Q Consensus 1 ~~~k~vLPkyFK----sSFvRQLN~YGFrKv~----------~d~wEFahe~F~RGq~~LL~~IkRr 53 (440)
.|+++|||+||| +||+||||+||||||. ++.|||+|++|+||+++||.+|+||
T Consensus 40 ~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~~~~~ef~h~~F~Rg~~~LL~~IkRk 106 (106)
T 1hks_A 40 QFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106 (106)
T ss_dssp TTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCTTSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred HHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCCCCceEEECcCccCcCHHHHhhCcCC
Confidence 378999999999 9999999999999995 4789999999999999999999997
No 3
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=99.47 E-value=6.1e-15 Score=125.60 Aligned_cols=37 Identities=35% Similarity=0.529 Sum_probs=35.1
Q ss_pred hhhchhhhhhh----hhhhccccCCCceeec-----------CCCceeecCC
Q 013585 2 EQKGEMGKEFK----SQVYHNLISKGFRKVD-----------PDRWEFANEG 38 (440)
Q Consensus 2 ~~k~vLPkyFK----sSFvRQLN~YGFrKv~-----------~d~wEFahe~ 38 (440)
|+++|||+||| +||+||||+||||||. +++|||+|++
T Consensus 49 F~~~VLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~g~~~~~~~~~wEF~n~~ 100 (102)
T 3hts_B 49 FVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENER 100 (102)
T ss_dssp HHHHTHHHHCSSCCHHHHHHHHHHTTEEECC---------CCSCCEEEEECC
T ss_pred HHHHHHHHhcCCCcHHHHHHHhhcCCceEeeccccCcccCCCcCCeEecCCC
Confidence 78899999999 9999999999999998 7899999997
No 4
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=84.52 E-value=2.9 Score=34.31 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 86 EEEVERLKRDKNVLMQELVRLRQQQ 110 (440)
Q Consensus 86 e~EIe~LKrDn~~L~qEL~rLRQqQ 110 (440)
.-||+.||.+|..|.+|...++...
T Consensus 26 qmEieELKekN~~L~~e~~e~~~~~ 50 (81)
T 2jee_A 26 QMEIEELKEKNNSLSQEVQNAQHQR 50 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4477777777777777666644433
No 5
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=76.45 E-value=4.7 Score=30.35 Aligned_cols=31 Identities=13% Similarity=0.252 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 87 EEVERLKRDKNVLMQELVRLRQQQQASDSQL 117 (440)
Q Consensus 87 ~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qL 117 (440)
.+++.||.++..|..++..|+++.+.+..+|
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888888877777766555544
No 6
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=74.52 E-value=3.6 Score=28.65 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=22.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQ 108 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQ 108 (440)
.|++.++.|-.+|..|..||.|||.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3789999999999999999999985
No 7
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=73.36 E-value=9.1 Score=28.35 Aligned_cols=44 Identities=18% Similarity=0.288 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 128 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mE 128 (440)
+...|.+||+|+-.|...-+.|.+-..+++.++..++..+-..|
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenevashe 51 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVASHE 51 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 56788899999988887766666666666666666665554443
No 8
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=73.07 E-value=7.2 Score=29.84 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=26.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQL 117 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qL 117 (440)
.|+.+++.|..+|..|..||..|+.+...+...|
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888899999999988888887766554443
No 9
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=72.29 E-value=6.9 Score=27.71 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=24.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQ 111 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq 111 (440)
.|++.||.|...+..|..||.|||.-.-
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 3789999999999999999999987543
No 10
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=70.65 E-value=7.8 Score=29.29 Aligned_cols=34 Identities=26% Similarity=0.296 Sum_probs=25.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQL 117 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qL 117 (440)
.|+.+++.|..+|..|..||..|+.+...++..|
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888888888888888888888766555443
No 11
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=68.08 E-value=34 Score=29.19 Aligned_cols=56 Identities=16% Similarity=0.152 Sum_probs=43.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAK 140 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLak 140 (440)
...||..|++..+.|..||..++.+...++..|..+++|....-..-+..+.-|-.
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~ 89 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEE 89 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998888876543333444444443
No 12
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=67.50 E-value=11 Score=31.42 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 87 EEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 87 ~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
.++..|..++..|+.|+..|+++...+..++..+.++++.
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777788878877777777777777777654
No 13
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=67.41 E-value=6.5 Score=27.35 Aligned_cols=25 Identities=12% Similarity=0.287 Sum_probs=22.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQ 108 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQ 108 (440)
.|++.++.|-.+|..|..||.|||.
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3788999999999999999999985
No 14
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=67.38 E-value=23 Score=26.94 Aligned_cols=39 Identities=26% Similarity=0.266 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQR 123 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eR 123 (440)
|-..|+-||++|.-|.+||...-.+...++.+--.|.+-
T Consensus 8 L~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKev 46 (54)
T 1deb_A 8 LLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEV 46 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHH
Confidence 556788888888888888877666665555554444443
No 15
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=67.07 E-value=6.6 Score=27.51 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=22.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQ 108 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQ 108 (440)
.|++.+|.|-.+|..|..||.|||.
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4789999999999999999999985
No 16
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=66.46 E-value=6.9 Score=27.36 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=22.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQ 108 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQ 108 (440)
.|++.++.|-.++..|..|+.|||.
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3789999999999999999999985
No 17
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=65.25 E-value=11 Score=28.26 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=14.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQ 109 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQq 109 (440)
|..|++.||...+.|..++..|+.+
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666665555554
No 18
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=65.08 E-value=12 Score=26.49 Aligned_cols=28 Identities=32% Similarity=0.451 Sum_probs=24.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQ 111 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq 111 (440)
.|+++|+.|-.++..|..|+.|||.-.-
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4789999999999999999999987543
No 19
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=64.78 E-value=7.8 Score=27.13 Aligned_cols=25 Identities=32% Similarity=0.431 Sum_probs=22.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQ 108 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQ 108 (440)
.|++.++.|-.+|..|..|+.+||.
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3789999999999999999999885
No 20
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=64.42 E-value=21 Score=33.95 Aligned_cols=79 Identities=8% Similarity=0.149 Sum_probs=33.3
Q ss_pred ceeecCCccCCcccccccccccCCCCCCCCCCccccccccCcCccchhccccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 32 WEFANEGFLRGQKHLLRSISRRKPAHGHGHQQSHQQNAQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQ 111 (440)
Q Consensus 32 wEFahe~F~RGq~~LL~~IkRrk~~~~~s~q~~~q~~~qsss~g~~~E~~k~~Le~EIe~LKrDn~~L~qEL~rLRQqQq 111 (440)
|==.||.|.-.+++||..++=.-+. + .+.+.+ ...+.+||++..
T Consensus 39 yL~~~PdFf~~~~~Ll~~L~lph~~------------~---~aVSL~---------------------erQ~~~LR~r~~ 82 (252)
T 3e98_A 39 YLSQHPEFFVEHDELIPELRIPHQP------------G---DAVSLV---------------------ERQVRLLRERNI 82 (252)
T ss_dssp -------------------------------------------CHHH---------------------HHHHHHHHHHHH
T ss_pred HHHhCCHHHhhCHHHHHhCCCCCCC------------C---CcccHH---------------------HHHHHHHHHHHH
Confidence 3456999999999999887632110 0 011121 223455666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 013585 112 ASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPG 146 (440)
Q Consensus 112 ~~~~qLq~L~eRLq~mEqrQqQMmsFLakavqnP~ 146 (440)
.++.++..|.+.-+.-|+..+++..+..+++.-.+
T Consensus 83 ~Le~~L~~Li~~A~~Ne~l~~~~~~l~l~LL~a~s 117 (252)
T 3e98_A 83 EMRHRLSQLMDVARENDRLFDKTRRLVLDLLDATS 117 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 66677777777777888888888888777776543
No 21
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=63.91 E-value=28 Score=30.62 Aligned_cols=31 Identities=10% Similarity=0.074 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 88 EVERLKRDKNVLMQELVRLRQQQQASDSQLQ 118 (440)
Q Consensus 88 EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq 118 (440)
|.-.++++...|.+++..+.++...+++++.
T Consensus 69 El~k~~~~~~~L~~~l~~~~kE~~~lK~el~ 99 (138)
T 3hnw_A 69 DYFKAKKMADSLSLDIENKDKEIYDLKHELI 99 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 22
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=63.26 E-value=8.7 Score=26.72 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=22.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQ 108 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQ 108 (440)
+|++.|+.|-..+..|..||.|||.
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3788999999999999999999875
No 23
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=63.01 E-value=10 Score=26.55 Aligned_cols=29 Identities=17% Similarity=0.417 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 92 LKRDKNVLMQELVRLRQQQQASDSQLQTM 120 (440)
Q Consensus 92 LKrDn~~L~qEL~rLRQqQq~~~~qLq~L 120 (440)
+++.+.+..++|..||.|...++.|+.+|
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 45666666777777766666555555443
No 24
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=62.74 E-value=8.9 Score=26.83 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=22.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQ 108 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQ 108 (440)
.|++.||.|-..|..|..|+.|||.
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3788999999999999999999985
No 25
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=62.01 E-value=9.3 Score=26.74 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=22.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQ 108 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQ 108 (440)
.|++.++.|-.++..|..||.|||.
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4789999999999999999999985
No 26
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=60.84 E-value=33 Score=29.42 Aligned_cols=58 Identities=17% Similarity=0.164 Sum_probs=38.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAV 142 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLakav 142 (440)
...||..|++..+.|..||..++.+...++..|..+++|....-..-+..+.-|-..+
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL 93 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQL 93 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888899999999999888888888888888888887654433344444444333
No 27
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=60.59 E-value=11 Score=25.75 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=13.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQ 108 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQ 108 (440)
+..||..||++..+|.-|+..|+|
T Consensus 7 lkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344555555555555555555554
No 28
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=59.20 E-value=48 Score=27.39 Aligned_cols=48 Identities=19% Similarity=0.367 Sum_probs=40.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRH 131 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQ 131 (440)
.+..++..|+.+-..|.+||..|..+...+..++.+++.-....++.-
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE 55 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEE 55 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHH
Confidence 467889999999999999999999999999999998888777665433
No 29
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=59.10 E-value=34 Score=30.09 Aligned_cols=46 Identities=13% Similarity=0.293 Sum_probs=24.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQR 130 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqr 130 (440)
+..+++.+.++...|..||..++-+....+.++..+.+++...+.+
T Consensus 80 L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 80 LSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555555555433
No 30
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=59.02 E-value=13 Score=30.64 Aligned_cols=31 Identities=13% Similarity=0.224 Sum_probs=18.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDS 115 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~ 115 (440)
+..+++.|..+|..|..+|..|+++...++.
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666665544333
No 31
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=58.83 E-value=16 Score=28.04 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=22.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDS 115 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~ 115 (440)
.++.+++.|+.+|..|..+|..|+.+...++.
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777888888888887777776554443
No 32
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=58.72 E-value=21 Score=29.32 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 94 RDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 94 rDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
+-++.+..||.+.|--+.++..+|+..+.|.+.
T Consensus 24 qAKQ~i~EELs~vr~~ni~~eskL~eae~rn~e 56 (81)
T 1wt6_A 24 LTRQSLSREMEAIRTDNQNFASQLREAEARNRD 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666655555444
No 33
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=58.23 E-value=7.1 Score=29.66 Aligned_cols=34 Identities=29% Similarity=0.340 Sum_probs=24.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQL 117 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qL 117 (440)
.|+.+++.|..+|..|..+|..|+.+...++..|
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888888888887765544433
No 34
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=56.24 E-value=73 Score=27.50 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQT 119 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~ 119 (440)
-+..|+.|+++.+.|..||.+++.+.+..-.+|..
T Consensus 13 rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~ 47 (120)
T 3i00_A 13 KDHLIERLYREISGLKAQLENMKTESQRVVLQLKG 47 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35679999999999999999999988766555443
No 35
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=55.90 E-value=36 Score=34.51 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 89 VERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAK 140 (440)
Q Consensus 89 Ie~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLak 140 (440)
++.|+.+...|.+++..+.++...++.+++.+.+++...|..-+++.+-+..
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~e 56 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQE 56 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666666666666667777777777777666666555543
No 36
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=55.31 E-value=57 Score=31.58 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHhhh
Q 013585 89 VERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQ 155 (440)
Q Consensus 89 Ie~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLakavqnP~Fl~qLvqq~ 155 (440)
+..||+.++.+..+|.-|-=+...+..++..+..+++....+++.++.-||++=++-.||..-+-.-
T Consensus 151 l~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V 217 (242)
T 3uux_B 151 PSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQI 217 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3578999999999988888888889999999999999999999999999999999999998777543
No 37
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=55.21 E-value=85 Score=25.65 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=18.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQT 119 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~ 119 (440)
|+..|..+-.....|..|+..||++...+..+.+.
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555554444444
No 38
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=53.63 E-value=85 Score=25.13 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013585 90 ERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQS 144 (440)
Q Consensus 90 e~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLakavqn 144 (440)
+.|.+....++.|+.+++++-..+......++..|..=.---+|-++-||-+|.+
T Consensus 14 eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L~~E~~LK~QAVNKLAEIMNR 68 (71)
T 1uix_A 14 EELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEIMNR 68 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333333334444444443333333333344444444333344666777766653
No 39
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=53.24 E-value=10 Score=29.24 Aligned_cols=27 Identities=33% Similarity=0.439 Sum_probs=21.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQ 110 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQ 110 (440)
.|+.+++.|+.+|..|..|+..|+++.
T Consensus 34 ~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888899999988888888754
No 40
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=51.72 E-value=30 Score=23.57 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013585 88 EVERLKRDKNVLMQELVRLR 107 (440)
Q Consensus 88 EIe~LKrDn~~L~qEL~rLR 107 (440)
||..||.+..+|..|+..|+
T Consensus 3 eiaalkqeiaalkkeiaalk 22 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALK 22 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555554443
No 41
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=50.58 E-value=19 Score=25.22 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=22.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQ 108 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQ 108 (440)
.+++.+|.|-.++..|..||.||+.
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3788999999999999999999875
No 42
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=46.81 E-value=21 Score=28.23 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 87 EEVERLKRDKNVLMQELVRLRQQQQASDSQLQT 119 (440)
Q Consensus 87 ~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~ 119 (440)
+-|..|+..+..|..|+..|+++...++.++.+
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777777777666665554
No 43
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=46.43 E-value=63 Score=26.70 Aligned_cols=30 Identities=13% Similarity=0.340 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 94 RDKNVLMQELVRLRQQQQASDSQLQTMVQR 123 (440)
Q Consensus 94 rDn~~L~qEL~rLRQqQq~~~~qLq~L~eR 123 (440)
.....+..||..|..+.+.++.++...+++
T Consensus 37 ~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~ 66 (101)
T 3u1c_A 37 ERSKQLEDDIVQLEKQLRVTEDSRDQVLEE 66 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444443333333
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=45.87 E-value=1.2e+02 Score=30.77 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013585 90 ERLKRDKNVLMQELVRLRQQQ 110 (440)
Q Consensus 90 e~LKrDn~~L~qEL~rLRQqQ 110 (440)
..++.+.+.+..++.+++++.
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~ 532 (597)
T 3oja_B 512 THLKERQAFKLRETQARRTEA 532 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHhh
Confidence 333333333333444433333
No 45
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=45.04 E-value=27 Score=28.40 Aligned_cols=43 Identities=26% Similarity=0.342 Sum_probs=25.3
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 82 KFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRL 124 (440)
Q Consensus 82 k~~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRL 124 (440)
+..|...|+.|--++.+|..|+..+++-...++.++..|++-+
T Consensus 32 k~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 32 KNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777788888888888777776665555555555443
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=44.63 E-value=90 Score=31.77 Aligned_cols=14 Identities=21% Similarity=0.339 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 013585 98 VLMQELVRLRQQQQ 111 (440)
Q Consensus 98 ~L~qEL~rLRQqQq 111 (440)
.+.+++.++++..+
T Consensus 506 ~l~~~~~~~~~~~~ 519 (597)
T 3oja_B 506 NLNKVFTHLKERQA 519 (597)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhh
Confidence 33333333333333
No 47
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=43.89 E-value=68 Score=24.15 Aligned_cols=42 Identities=12% Similarity=0.126 Sum_probs=30.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
|..+|..|..+...|..++..+|-..+..+.+-..-.+||..
T Consensus 9 Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlDN 50 (52)
T 1jcd_A 9 ASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRADN 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 556677777777777777777777777777777777777764
No 48
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=43.35 E-value=1.6e+02 Score=25.28 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 96 KNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLA 139 (440)
Q Consensus 96 n~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLa 139 (440)
.+.|..||..||.....+..++..|++.-...|+......+-|.
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLe 80 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLE 80 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHH
Confidence 55678888888888888888888888888888877776666665
No 49
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=43.07 E-value=41 Score=27.23 Aligned_cols=34 Identities=15% Similarity=0.279 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 87 EEVERLKRDKNVLMQELVRLRQQQQASDSQLQTM 120 (440)
Q Consensus 87 ~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L 120 (440)
+-|..|...+..|..|+..|+++++.+..+|+.|
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577888888888888888888888777777665
No 50
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=42.26 E-value=18 Score=29.15 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=18.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQA 112 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~ 112 (440)
+..+++.|..+|..|..+|..|+++...
T Consensus 41 ~~~r~~~L~~eN~~L~~~v~~L~~E~~~ 68 (78)
T 1gu4_A 41 TQHKVLELTAENERLQKKVEQLSRELST 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777666665443
No 51
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=41.38 E-value=84 Score=31.40 Aligned_cols=34 Identities=12% Similarity=0.047 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 91 RLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRL 124 (440)
Q Consensus 91 ~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRL 124 (440)
+++++......|+.+++++....+..+..+...+
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (487)
T 3oja_A 432 NAIRDWDMYQHKETQLAEENARLKKLNGEADLAL 465 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhh
Confidence 3333333444444444443333333333333333
No 52
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=40.98 E-value=86 Score=25.41 Aligned_cols=44 Identities=20% Similarity=0.315 Sum_probs=34.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGM 127 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~m 127 (440)
..++-++.|+..+..+..++.+|..+...+..++..+...|+.+
T Consensus 67 ~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 67 TKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888888888887877777777776653
No 53
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=40.00 E-value=1.4e+02 Score=24.13 Aligned_cols=43 Identities=19% Similarity=0.222 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 96 KNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFL 138 (440)
Q Consensus 96 n~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFL 138 (440)
...|...|..|+++...++.+++.+...|..+.++|+.+..=|
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666777777777655444
No 54
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=39.84 E-value=89 Score=29.24 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 89 VERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRL 124 (440)
Q Consensus 89 Ie~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRL 124 (440)
|..|-.++..|.++|....++...++.+++.+++..
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444555555555554444444444444444444333
No 55
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=39.30 E-value=1.2e+02 Score=24.81 Aligned_cols=45 Identities=13% Similarity=0.332 Sum_probs=37.8
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 82 KFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 82 k~~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
++.+.+|+.+.|-++..+..+|...+.+.+.+..+|+.+++++..
T Consensus 26 KQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 26 RQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999998888888888888888777765
No 56
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=39.23 E-value=2e+02 Score=25.95 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 86 EEEVERLKRDKNVLMQELVRLRQQ 109 (440)
Q Consensus 86 e~EIe~LKrDn~~L~qEL~rLRQq 109 (440)
...|+.|+.+...|..+|..+...
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeee 90 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEV 90 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666666666644
No 57
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=38.78 E-value=1.4e+02 Score=27.98 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQR 130 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqr 130 (440)
++.++..|+.....+..++..++.++...+..+..+..|+...+.+
T Consensus 37 le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~ 82 (256)
T 3na7_A 37 ALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKK 82 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555555555555555555555544433
No 58
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=38.76 E-value=41 Score=27.97 Aligned_cols=37 Identities=27% Similarity=0.360 Sum_probs=23.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTM 120 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L 120 (440)
.|+.++..|..+.+.|..|+.+++++...++..+++|
T Consensus 52 ~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 52 HLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666666666666666666666666666666555543
No 59
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=38.15 E-value=1e+02 Score=28.93 Aligned_cols=15 Identities=27% Similarity=0.162 Sum_probs=8.3
Q ss_pred ccccChhhhhcccCC
Q 013585 275 TERQSSSRAIASEKT 289 (440)
Q Consensus 275 ~~~~s~~~~~~s~~~ 289 (440)
.+|...-.|..|.+|
T Consensus 214 ~~i~~~~~Iv~Cp~C 228 (256)
T 3na7_A 214 TEVLTSGDMITCPYC 228 (256)
T ss_dssp HHHHHSSSCEECTTT
T ss_pred HHHHCCCCEEECCCC
Confidence 344444456666666
No 60
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=38.07 E-value=77 Score=31.58 Aligned_cols=11 Identities=9% Similarity=-0.070 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 013585 115 SQLQTMVQRLQ 125 (440)
Q Consensus 115 ~qLq~L~eRLq 125 (440)
.++..+..+|+
T Consensus 33 ~~l~~~~~~i~ 43 (323)
T 1lwu_C 33 EMWRVNQQFVT 43 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 61
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=37.76 E-value=92 Score=31.47 Aligned_cols=44 Identities=14% Similarity=0.136 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 128 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mE 128 (440)
++.+++.|++++..|..++..++.+.+.++.++...+..-+.++
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~ 51 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLH 51 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666666666655444444443
No 62
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=37.59 E-value=61 Score=27.40 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 86 EEEVERLKRDKNVLMQELVRLRQQQQASDSQLQT 119 (440)
Q Consensus 86 e~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~ 119 (440)
.++++.|+++...|..|-.+||++...++.+|..
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888899999988888888777777643
No 63
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=37.35 E-value=1.6e+02 Score=25.41 Aligned_cols=43 Identities=26% Similarity=0.368 Sum_probs=31.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQ 129 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEq 129 (440)
.+.++++++..++..|... +.++-.....+++.|..+++..|+
T Consensus 17 ql~~qL~k~~~~r~~Le~~---w~~k~E~~k~qV~~L~~~~q~sE~ 59 (112)
T 1x79_B 17 QANDQLEKTMKDKQELEDF---IKQSSEDSSHQISALVLRAQASEI 59 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777766 445555678889999999988883
No 64
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=37.22 E-value=83 Score=25.92 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 87 EEVERLKRDKNVLMQELVRLRQQQQ 111 (440)
Q Consensus 87 ~EIe~LKrDn~~L~qEL~rLRQqQq 111 (440)
+|++.|......|..|+..||+...
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~ 70 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENK 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777776654
No 65
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=36.39 E-value=58 Score=26.06 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=24.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 128 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mE 128 (440)
|+..+..+-+-.+.|-..|.+..++...+..+|+.|.+|+..++
T Consensus 19 LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 19 LETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444556666666666666666666666666666666655
No 66
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=36.01 E-value=2e+02 Score=26.76 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 96 KNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFL 138 (440)
Q Consensus 96 n~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFL 138 (440)
.+.|..||..|+.....+..++..|++.-..+|..-....+-|
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~Sl 132 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSL 132 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhH
Confidence 4555556666666666666666666666666665555444433
No 67
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=35.66 E-value=1.7e+02 Score=23.38 Aligned_cols=14 Identities=21% Similarity=0.199 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhcCc
Q 013585 132 QQMMAFLAKAVQSP 145 (440)
Q Consensus 132 qQMmsFLakavqnP 145 (440)
+|-++-||-+|.+-
T Consensus 56 ~QAVNKLAEIMNRK 69 (71)
T 1s1c_X 56 TQAVNKLAEIMNRK 69 (71)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcc
Confidence 45666666666543
No 68
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=35.33 E-value=1.3e+02 Score=28.29 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 87 EEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 87 ~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
.+++.|+.+...|..|+..++.+...+...+.++..|...
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~r 98 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQ 98 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888888888888888754
No 69
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=33.90 E-value=1.6e+02 Score=26.50 Aligned_cols=40 Identities=20% Similarity=0.309 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 87 EEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 87 ~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
+.+++|++.+..-..||.+||-+...+...++....-|..
T Consensus 46 gKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkr 85 (167)
T 4gkw_A 46 GKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKR 85 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 3567778888888888888887776666666655555544
No 70
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=33.80 E-value=1.1e+02 Score=25.23 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 87 EEVERLKRDKNVLMQELVRLRQQQQ 111 (440)
Q Consensus 87 ~EIe~LKrDn~~L~qEL~rLRQqQq 111 (440)
.|++.|.+....+..|+.+|++...
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~ 62 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENK 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777653
No 71
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=33.76 E-value=50 Score=26.33 Aligned_cols=32 Identities=16% Similarity=0.340 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 87 EEVERLKRDKNVLMQELVRLRQQQQASDSQLQ 118 (440)
Q Consensus 87 ~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq 118 (440)
+-|..|+.+...|..|...|+.++..+..+|.
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34667777777777777777777766655554
No 72
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=33.58 E-value=56 Score=21.96 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 105 RLRQQQQASDSQLQTMVQRLQGME 128 (440)
Q Consensus 105 rLRQqQq~~~~qLq~L~eRLq~mE 128 (440)
.|.++...++..+|+++.+|.+.|
T Consensus 5 alekkcaalesklqalekkleale 28 (31)
T 3ljm_A 5 ALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666677777777776665
No 73
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=33.46 E-value=1.7e+02 Score=24.97 Aligned_cols=41 Identities=10% Similarity=0.181 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 98 VLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFL 138 (440)
Q Consensus 98 ~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFL 138 (440)
+|.+||...+++...+..++..+...+.++|+-=.--.+-|
T Consensus 8 al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KL 48 (106)
T 4e61_A 8 AIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKL 48 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555666654433333333
No 74
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=33.09 E-value=95 Score=24.79 Aligned_cols=43 Identities=21% Similarity=0.226 Sum_probs=34.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
..++-+..|...+..+..++.+|..+...++.+|..+...|+.
T Consensus 62 ~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 62 AKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888888888888888888887777654
No 75
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=32.97 E-value=1.4e+02 Score=30.44 Aligned_cols=50 Identities=14% Similarity=0.138 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 92 LKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKA 141 (440)
Q Consensus 92 LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLaka 141 (440)
|+.+...|.+++..++++.+.+..+++.+.++|...|..-+++.+-|..+
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333334444444444444455556666666666665555666655443
No 76
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=32.94 E-value=1.2e+02 Score=23.46 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 86 EEEVERLKRDKNVLMQELVRLRQQQQASDSQLQT 119 (440)
Q Consensus 86 e~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~ 119 (440)
+..+.+||.-|..|...|..|+.+....+.++..
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieR 43 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIER 43 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888988888888888887766544444443
No 77
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=32.78 E-value=1.4e+02 Score=21.69 Aligned_cols=8 Identities=38% Similarity=0.459 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 013585 100 MQELVRLR 107 (440)
Q Consensus 100 ~qEL~rLR 107 (440)
..||+.|+
T Consensus 6 kselqalk 13 (48)
T 1g6u_A 6 KSELQALK 13 (48)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 78
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=32.69 E-value=1.3e+02 Score=28.52 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013585 88 EVERLKRDKNVLMQELVRLRQQQ 110 (440)
Q Consensus 88 EIe~LKrDn~~L~qEL~rLRQqQ 110 (440)
|++.|..+...|..||..||++.
T Consensus 116 EN~~Lh~~ie~l~eEi~~LkeEn 138 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLKKEN 138 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555543
No 79
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=32.64 E-value=47 Score=26.29 Aligned_cols=34 Identities=29% Similarity=0.305 Sum_probs=19.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQ 118 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq 118 (440)
|+.+|..|...+..|..|...||++...+..++.
T Consensus 34 LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 34 LETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666666555554444443
No 80
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=32.39 E-value=68 Score=28.05 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013585 97 NVLMQELVRLRQQQQASDSQLQT 119 (440)
Q Consensus 97 ~~L~qEL~rLRQqQq~~~~qLq~ 119 (440)
..|.-||..|.|+.+....++..
T Consensus 74 qeLqgEI~~Lnq~Lq~a~ae~er 96 (121)
T 3mq7_A 74 EELEGEITTLNHKLQDASAEVER 96 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443333
No 81
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=32.26 E-value=36 Score=22.46 Aligned_cols=19 Identities=37% Similarity=0.553 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013585 89 VERLKRDKNVLMQELVRLR 107 (440)
Q Consensus 89 Ie~LKrDn~~L~qEL~rLR 107 (440)
|.+||..+..|.+|+..|.
T Consensus 2 irrlkqknarlkqeiaale 20 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALE 20 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHH
Confidence 3456666666666655443
No 82
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=32.24 E-value=32 Score=24.11 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013585 86 EEEVERLKRDKNVLMQELVRL 106 (440)
Q Consensus 86 e~EIe~LKrDn~~L~qEL~rL 106 (440)
..+|+.||+.|..|..++..|
T Consensus 13 qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 13 QQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhHHHHHHHHHHHHHHHHhc
Confidence 457889999999998887543
No 83
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=32.14 E-value=2.5e+02 Score=26.08 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013585 90 ERLKRDKNVLMQELVRLRQQQ 110 (440)
Q Consensus 90 e~LKrDn~~L~qEL~rLRQqQ 110 (440)
..|+..+..|..-|..|.|.+
T Consensus 98 ~~l~~~~~~l~~~ireLEq~N 118 (189)
T 2v71_A 98 SQTRAIKEQLHKYVRELEQAN 118 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333333
No 84
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=31.68 E-value=33 Score=25.66 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=15.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQ 108 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQ 108 (440)
|+.++..|..+|..|..++..|++
T Consensus 27 LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 27 LENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666665554
No 85
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=31.61 E-value=80 Score=22.38 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 87 EEVERLKRDKNVLMQELVRLRQQQQ 111 (440)
Q Consensus 87 ~EIe~LKrDn~~L~qEL~rLRQqQq 111 (440)
.|.++|.++...-..||.+||++..
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~ 31 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENK 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4678899999999999999988764
No 86
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=31.60 E-value=1.2e+02 Score=22.74 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=20.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTM 120 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L 120 (440)
+..++..|...|..|..-|.+.|++...++.++..|
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555666666666666666666655555555443
No 87
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=30.78 E-value=74 Score=25.59 Aligned_cols=37 Identities=27% Similarity=0.450 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 87 EEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQR 123 (440)
Q Consensus 87 ~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eR 123 (440)
..|++|+.-+..+..-|+.+.|..-.+++.+..+..|
T Consensus 28 ~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~r 64 (72)
T 2xu6_A 28 VEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDR 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3334444433334444444444433333333333333
No 88
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=30.48 E-value=2.6e+02 Score=23.95 Aligned_cols=51 Identities=16% Similarity=0.262 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 90 ERLKRDKNVLMQELVRLRQQQQASD----SQLQTMVQRLQGMEQRHQQMMAFLAK 140 (440)
Q Consensus 90 e~LKrDn~~L~qEL~rLRQqQq~~~----~qLq~L~eRLq~mEqrQqQMmsFLak 140 (440)
..|+..++.|..|+..+|.+..... ..+..|+..|.........|..+|..
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iRe 60 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRE 60 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433332 23444555555555555555555543
No 89
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=29.89 E-value=1.4e+02 Score=24.43 Aligned_cols=38 Identities=8% Similarity=0.224 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 88 EVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQ 125 (440)
Q Consensus 88 EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq 125 (440)
++..+......+..||..|+.+.+.++.++....++|.
T Consensus 31 ~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~ 68 (101)
T 3u59_A 31 DKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555555555555444444444443
No 90
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=29.56 E-value=65 Score=27.26 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=15.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQ 110 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQ 110 (440)
+..+|+.|.+++..|.+++..|.-+.
T Consensus 17 lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 17 LRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666665554443
No 91
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=28.50 E-value=1.2e+02 Score=24.61 Aligned_cols=37 Identities=14% Similarity=0.219 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 88 EVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRL 124 (440)
Q Consensus 88 EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRL 124 (440)
.++.++.+...+..+|..|+..+..++.++..+...+
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l 40 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAI 40 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555554444443
No 92
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=28.21 E-value=1.1e+02 Score=25.03 Aligned_cols=52 Identities=15% Similarity=0.381 Sum_probs=33.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQA-----SDSQLQTMVQRLQGMEQRHQQMM 135 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~-----~~~qLq~L~eRLq~mEqrQqQMm 135 (440)
.+.+.|..|-.+|..|..++..++++... ++.++..|...|..+..--.++.
T Consensus 20 syIdKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~ 76 (93)
T 3s4r_A 20 NLIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVE 76 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888877765332 35566666666665544433333
No 93
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=27.74 E-value=2.9e+02 Score=23.70 Aligned_cols=58 Identities=10% Similarity=0.190 Sum_probs=38.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHh
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTM---------------VQRLQGMEQRHQQMMAFLAKAV 142 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L---------------~eRLq~mEqrQqQMmsFLakav 142 (440)
..+|++.||.+..-...-|.++|.-+......-+.+ .++...|+++.+++-.-+.|..
T Consensus 22 T~~ELeSlK~EL~HfE~rl~K~rH~~~el~l~~~k~~~~~~~g~~e~~s~~~ek~~~le~k~Kk~~~kV~Kl~ 94 (109)
T 2fcw_A 22 TDKELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKELGYTVKKHL 94 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999988888776555432332 3445566666665555444444
No 94
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=27.61 E-value=2e+02 Score=23.93 Aligned_cols=44 Identities=18% Similarity=0.332 Sum_probs=31.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGM 127 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~m 127 (440)
.+++-++-|++....|...+..++++....+.++..+.+.|+.+
T Consensus 85 ~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 85 NFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777777676666666554
No 95
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=27.42 E-value=1.2e+02 Score=29.28 Aligned_cols=55 Identities=16% Similarity=0.241 Sum_probs=45.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFL 138 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFL 138 (440)
.+..+++.|--.+.....||..+--+.+++..-=+.+.+||-++|+..-.+-.-|
T Consensus 160 ~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL 214 (242)
T 3uux_B 160 TLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNL 214 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4677888888888999999999998888888888888899999997776555555
No 96
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=27.00 E-value=2.5e+02 Score=29.35 Aligned_cols=57 Identities=16% Similarity=0.207 Sum_probs=39.8
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 82 KFGLEEEVERLKRDKNVLMQELVRLRQQQ-----------QASDSQLQTMVQRLQGMEQRHQQMMAFL 138 (440)
Q Consensus 82 k~~Le~EIe~LKrDn~~L~qEL~rLRQqQ-----------q~~~~qLq~L~eRLq~mEqrQqQMmsFL 138 (440)
+..+..+++.|+.+++.+..+|.+++... ..+..++..+.+++..+|....++-.-|
T Consensus 79 ~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 79 LRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566788888888888888888766432 3556677777777777776666655544
No 97
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=26.92 E-value=3.7e+02 Score=24.59 Aligned_cols=55 Identities=15% Similarity=0.255 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhc
Q 013585 89 VERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMM---AFLAKAVQ 143 (440)
Q Consensus 89 Ie~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMm---sFLakavq 143 (440)
+..|...+..|..||.+++........+...|.+||-.+|+.-..|- .|=-|++|
T Consensus 92 ~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ 149 (168)
T 3o0z_A 92 IGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQ 149 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34445566677777777777777777777777777777776555443 24445554
No 98
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=26.52 E-value=1.8e+02 Score=26.30 Aligned_cols=19 Identities=11% Similarity=0.351 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013585 87 EEVERLKRDKNVLMQELVR 105 (440)
Q Consensus 87 ~EIe~LKrDn~~L~qEL~r 105 (440)
.++++|+.++..++..|.+
T Consensus 5 qe~~~Le~Ek~~~~~rI~~ 23 (155)
T 2aze_A 5 QECQNLEVERQRRLERIKQ 23 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4667777777776655543
No 99
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=26.36 E-value=1.5e+02 Score=24.74 Aligned_cols=40 Identities=8% Similarity=0.135 Sum_probs=29.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQR 123 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eR 123 (440)
-++..++.|+.....|...+.+++.+...+...++.+.+.
T Consensus 92 ~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 92 SIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3677778888888888888888888877777777665543
No 100
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=26.24 E-value=33 Score=26.75 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 013585 97 NVLMQELVRLRQQQQ 111 (440)
Q Consensus 97 ~~L~qEL~rLRQqQq 111 (440)
..|..++.++++.|.
T Consensus 15 ~~L~~~v~~~e~~Q~ 29 (64)
T 3t97_C 15 TSLHREVEKVKLDQK 29 (64)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 101
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=25.88 E-value=2e+02 Score=21.15 Aligned_cols=42 Identities=36% Similarity=0.477 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQ 129 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEq 129 (440)
+++.+++|-.-.+.|..-+.||--++..+.. .|.+|+-.+|.
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~---KlKqRit~lE~ 44 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQM---KMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHh
Confidence 6778888888888888888888777766554 45567777774
No 102
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=25.39 E-value=1.7e+02 Score=30.08 Aligned_cols=57 Identities=16% Similarity=0.266 Sum_probs=36.4
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 82 KFGLEEEVERLKRDKNVLMQELVRLRQQ---QQASDSQLQTMVQRLQGMEQRHQQMMAFL 138 (440)
Q Consensus 82 k~~Le~EIe~LKrDn~~L~qEL~rLRQq---Qq~~~~qLq~L~eRLq~mEqrQqQMmsFL 138 (440)
+..+..+++.|+.+++.+..+|.+++.. ...+..++..+.+++..+|.....+-.-|
T Consensus 40 ~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 40 WRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356778888888888888888765432 23455566666666666665555544433
No 103
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=25.04 E-value=2.3e+02 Score=32.30 Aligned_cols=26 Identities=15% Similarity=0.373 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 101 QELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 101 qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
.|+..++++.+....+...++++++.
T Consensus 991 ~e~~~l~~~~~~~~ke~~~lee~~~~ 1016 (1080)
T 2dfs_A 991 EEIAKLRKELHQTQTEKKTIEEWADK 1016 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344444333
No 104
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=24.93 E-value=2.6e+02 Score=22.90 Aligned_cols=36 Identities=11% Similarity=0.199 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 103 LVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFL 138 (440)
Q Consensus 103 L~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFL 138 (440)
+..+.+.....+.++..|..|++.+|.--.+.-.-|
T Consensus 32 ~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L 67 (101)
T 3u1c_A 32 KKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEEL 67 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455555556666655554433333333
No 105
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=24.70 E-value=1.1e+02 Score=26.04 Aligned_cols=15 Identities=27% Similarity=0.384 Sum_probs=3.2
Q ss_pred cHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVL 99 (440)
Q Consensus 85 Le~EIe~LKrDn~~L 99 (440)
|..+|+.||+|...+
T Consensus 4 l~~~~~~l~~~~~~~ 18 (182)
T 3kqg_A 4 LNAQIPELKSDLEKA 18 (182)
T ss_dssp ---------CHHHHH
T ss_pred hhhhHHHHHHHHHHH
Confidence 445666666665533
No 106
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=24.66 E-value=1.1e+02 Score=27.30 Aligned_cols=31 Identities=32% Similarity=0.344 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 98 VLMQELVRLRQQQQASDSQLQTMVQRLQGME 128 (440)
Q Consensus 98 ~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mE 128 (440)
.|.+.+.++..+....+.+|..|++|++.+|
T Consensus 4 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (192)
T 2gkw_A 4 LLESQLSRHDQMLSVHDIRLADMDLRFQVLE 34 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566666666666666667777777777777
No 107
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=24.63 E-value=1.9e+02 Score=24.57 Aligned_cols=34 Identities=24% Similarity=0.220 Sum_probs=17.9
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 82 KFGLEEEVERLKRDKNVLMQELVRLRQQQQASDS 115 (440)
Q Consensus 82 k~~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~ 115 (440)
+..+.-+|+-||...+.+...+..++++...-..
T Consensus 25 Ksal~YqVdlLKD~LEe~eE~~aql~Re~~eK~r 58 (103)
T 4h22_A 25 KTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNK 58 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666655555555555555443333
No 108
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=24.22 E-value=2.1e+02 Score=29.00 Aligned_cols=32 Identities=22% Similarity=0.216 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 97 NVLMQELVRLRQQQQASDSQLQTMVQRLQGME 128 (440)
Q Consensus 97 ~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mE 128 (440)
..|..||..++++...++.+++.+...+..++
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~ 37 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCK 37 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433
No 109
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=24.15 E-value=1.3e+02 Score=25.17 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 97 NVLMQELVRLRQQQQASDSQLQTMVQRLQGM 127 (440)
Q Consensus 97 ~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~m 127 (440)
..|+.||..|.++-+.++.++..+.+.|+.+
T Consensus 9 ~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~l 39 (106)
T 2aze_B 9 EGLTQDLRQLQESEQQLDHLMNICTTQLRLL 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555445555555555554443
No 110
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=23.81 E-value=2.3e+02 Score=28.14 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=20.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 128 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mE 128 (440)
|.+|+.+|.........+|..|+.+....+.+|+.|++.|..++
T Consensus 10 ~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 10 ILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444555444444433
No 111
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=23.70 E-value=1.2e+02 Score=26.19 Aligned_cols=45 Identities=7% Similarity=0.206 Sum_probs=32.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 128 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mE 128 (440)
.+++-++.|++....|...+.++.++....+.++..++..++.+-
T Consensus 95 ~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~ 139 (151)
T 2zdi_C 95 SIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQ 139 (151)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777778888888888887777777777776666666665544
No 112
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=23.48 E-value=4.1e+02 Score=23.96 Aligned_cols=44 Identities=16% Similarity=0.284 Sum_probs=20.8
Q ss_pred cHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELV-------RLRQQQQASDSQLQTMVQRLQGME 128 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~-------rLRQqQq~~~~qLq~L~eRLq~mE 128 (440)
|..++..|++....|..||. .++.+...+..++..++++++.++
T Consensus 73 L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq 123 (152)
T 3a7p_A 73 LQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLK 123 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555554433 333333444444444444444444
No 113
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=23.06 E-value=2.6e+02 Score=26.77 Aligned_cols=43 Identities=19% Similarity=0.353 Sum_probs=24.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 128 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mE 128 (440)
.+..|..+|+.+..|..+|.+|+.+.- ...+|..|++.|..+|
T Consensus 102 ~E~svqp~R~~R~~l~~~I~kLk~k~P-~s~kl~~LeqELvraE 144 (234)
T 3plt_A 102 IEASVQPSRDRKEKITDEIAHLKYKDP-QSTKIPVLEQELVRAE 144 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhccCC-CCchHHHHHHHHHHHH
Confidence 455666667777777777777765322 1234455555555444
No 114
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.05 E-value=3.4e+02 Score=22.89 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=18.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQ 110 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQ 110 (440)
.|..|++.|+..+..|...|..+++..
T Consensus 47 ~L~~el~~l~~~~~~LE~~l~e~e~~~ 73 (129)
T 3tnu_B 47 RLRAEIDNVKKQCANLQNAIADAEQRG 73 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 466677777777777777666665543
No 115
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=23.02 E-value=2e+02 Score=24.41 Aligned_cols=34 Identities=6% Similarity=0.255 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 95 DKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 128 (440)
Q Consensus 95 Dn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mE 128 (440)
|+.+|.+...+..++...++.+++.+..+|...+
T Consensus 5 e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~ 38 (125)
T 1joc_A 5 ERRALLERCLKGEGEIEKLQTKVLELQRKLDNTT 38 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444445444554433
No 116
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=22.89 E-value=2.5e+02 Score=26.22 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 86 EEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQR 123 (440)
Q Consensus 86 e~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eR 123 (440)
..|+..|..+.....+|+..|+++.+..+.+......+
T Consensus 26 ~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~ 63 (190)
T 4emc_A 26 VNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQ 63 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 33444444444444444444444444444444433333
No 117
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=22.67 E-value=2.4e+02 Score=29.51 Aligned_cols=71 Identities=10% Similarity=0.081 Sum_probs=45.0
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHH
Q 013585 82 KFGLEEEVERLKRDKNVLMQELVRLRQQ---QQASDSQLQTMVQRLQGMEQRHQQMMAFLA-KAVQSPGFLAQFV 152 (440)
Q Consensus 82 k~~Le~EIe~LKrDn~~L~qEL~rLRQq---Qq~~~~qLq~L~eRLq~mEqrQqQMmsFLa-kavqnP~Fl~qLv 152 (440)
+..+..+++.|+.+++.+..+|..++.. -+.+..++..+.+++..+|....++-.-|. .++.=|..++--|
T Consensus 42 ~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~v 116 (485)
T 3qne_A 42 WVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHESV 116 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 3456778899999999999988776542 234556677777777777766665555443 2333344444444
No 118
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=22.31 E-value=2.1e+02 Score=30.72 Aligned_cols=61 Identities=21% Similarity=0.293 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHhc
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQR---------------------LQGMEQRHQQMMAFLAKAVQ 143 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eR---------------------Lq~mEqrQqQMmsFLakavq 143 (440)
|+..+..||+..+.-.+-|.-||....+...+||.|+-= ++..|..|+|+....++-++
T Consensus 115 LRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a~dL~ 194 (562)
T 3ghg_A 115 LRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIAKDLL 194 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHhhcccC
Q ss_pred Cc
Q 013585 144 SP 145 (440)
Q Consensus 144 nP 145 (440)
.+
T Consensus 195 p~ 196 (562)
T 3ghg_A 195 PS 196 (562)
T ss_dssp CS
T ss_pred Cc
No 119
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=22.30 E-value=1.4e+02 Score=25.12 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 86 EEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQR 123 (440)
Q Consensus 86 e~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eR 123 (440)
..++..||++...|..+=..|-+....+..+|+.|.+-
T Consensus 5 ~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted 42 (106)
T 2aze_B 5 GGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSED 42 (106)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34566777777777777777777777777777777764
No 120
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=22.26 E-value=3.1e+02 Score=26.05 Aligned_cols=42 Identities=24% Similarity=0.207 Sum_probs=30.3
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 83 FGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRL 124 (440)
Q Consensus 83 ~~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRL 124 (440)
..+...+..+|.++..|.+.|.+.+.+.+....+|....+.+
T Consensus 167 ~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~ 208 (228)
T 3q0x_A 167 QFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQL 208 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667788888888888888888887777777666654443
No 121
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=22.24 E-value=2.4e+02 Score=20.76 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 95 DKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQR 130 (440)
Q Consensus 95 Dn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqr 130 (440)
|-..|...+.+|..-...+-.++.++..+|..+|++
T Consensus 8 eF~~L~rRVlqlE~~l~gI~S~idav~~Kl~~~Er~ 43 (45)
T 4gif_A 8 EFYMLTRRVLQLETVLEGVVSQIDAVGSKLKMLERK 43 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334556666666666777788888888888888764
No 122
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=22.13 E-value=3.2e+02 Score=22.20 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013585 112 ASDSQLQTMVQRLQGMEQ 129 (440)
Q Consensus 112 ~~~~qLq~L~eRLq~mEq 129 (440)
.....+..|..|++.+|.
T Consensus 41 ~~E~ei~sL~kKiq~lE~ 58 (101)
T 3u59_A 41 QLEEEQQGLQKKLKGTED 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 123
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.79 E-value=3.9e+02 Score=27.48 Aligned_cols=40 Identities=15% Similarity=0.280 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRL 124 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRL 124 (440)
|.+.-..++...+.|..+|..+++.+..+...+..+.+.+
T Consensus 58 Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~l 97 (390)
T 1deq_A 58 IDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELM 97 (390)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3333355667777777777777666666555555444443
No 124
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=21.74 E-value=69 Score=25.76 Aligned_cols=31 Identities=6% Similarity=0.193 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 96 KNVLMQELVRLRQQQQASDSQLQTMVQRLQG 126 (440)
Q Consensus 96 n~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~ 126 (440)
...+..++..|.++...++.++..|...+..
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~ 68 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLSRELST 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666655554443
No 125
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=21.62 E-value=1.8e+02 Score=23.54 Aligned_cols=52 Identities=17% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013585 92 LKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQ 143 (440)
Q Consensus 92 LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLakavq 143 (440)
|-.+++.+.+-|..+.-..+.++.+++.++++|.....+|.++-.=|.++++
T Consensus 4 l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e 55 (79)
T 3cvf_A 4 MAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQ 55 (79)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 126
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=21.26 E-value=61 Score=21.36 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013585 91 RLKRDKNVLMQELVRLRQQQ 110 (440)
Q Consensus 91 ~LKrDn~~L~qEL~rLRQqQ 110 (440)
.|.-+|.+|.+.+..|+|+.
T Consensus 4 alefendaleqkiaalkqki 23 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKI 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHH
Confidence 34455666666666666554
No 127
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.08 E-value=2.8e+02 Score=28.50 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=27.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 84 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRL 124 (440)
Q Consensus 84 ~Le~EIe~LKrDn~~L~qEL~rLRQqQq~~~~qLq~L~eRL 124 (440)
.|+..++-||+....-...|..||........+||.|+--+
T Consensus 117 eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666667777666655677777777777777777777654
No 128
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=20.85 E-value=3.1e+02 Score=27.14 Aligned_cols=49 Identities=16% Similarity=0.390 Sum_probs=28.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q 013585 85 LEEEVERLKRDKNVLMQELVRLRQQQQ------ASDSQLQTMVQRLQGMEQRHQQ 133 (440)
Q Consensus 85 Le~EIe~LKrDn~~L~qEL~rLRQqQq------~~~~qLq~L~eRLq~mEqrQqQ 133 (440)
+.+-++.|+.+.+.|..++.++.++.. ..++++..+++++...+++...
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 299 (426)
T 1lrz_A 245 FDEYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEE 299 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666667777666654321 2245566666666666555443
No 129
>3nkz_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MC midwest center for structural genomics; HET: MSE PG4; 2.11A {Yersinia enterocolitica subsp}
Probab=20.81 E-value=96 Score=26.62 Aligned_cols=74 Identities=8% Similarity=0.050 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHhhh-hhhhhhhhhhccccccc
Q 013585 99 LMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQ-NDSNKRIAEANKKRRIR 172 (440)
Q Consensus 99 L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsFLakavqnP~Fl~qLvqq~-~~~~~~~~~~~KKRRlp 172 (440)
-|.+|+.+...+...-.++.....-..-...-|++....|.+++.|-.=+..|+++. ++-...+...++.|++-
T Consensus 32 dWD~Lv~lE~~y~~lVe~L~~~~~~~~ls~~~~~~~~~lL~~IL~nDaeIR~Ll~~rl~eL~~li~~~~rq~~l~ 106 (123)
T 3nkz_A 32 NWDALVDLEMTYLKAVESTANITISSCSSLMLQDLLREKLRAILDNEIEIKRLLQLRLDRLSDLVGQSTKQQAVN 106 (123)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 366666666655444444433322211112335566688888888888888888763 23333455566666663
No 130
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=20.70 E-value=94 Score=30.16 Aligned_cols=18 Identities=11% Similarity=0.082 Sum_probs=9.7
Q ss_pred HHHHHhcCchhHHHHHhh
Q 013585 137 FLAKAVQSPGFLAQFVQQ 154 (440)
Q Consensus 137 FLakavqnP~Fl~qLvqq 154 (440)
=|.++-+=|.++..++..
T Consensus 90 ElerL~sPPL~iGtvlev 107 (251)
T 3m9b_A 90 EVDRLGQPPSGYGVLLAT 107 (251)
T ss_dssp HHHHHHSCCEEEEEEEEE
T ss_pred HHHHhcCCCceEEEEEEE
Confidence 344445566666666643
No 131
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=20.49 E-value=3.4e+02 Score=30.94 Aligned_cols=43 Identities=7% Similarity=0.101 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013585 95 DKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAF 137 (440)
Q Consensus 95 Dn~~L~qEL~rLRQqQq~~~~qLq~L~eRLq~mEqrQqQMmsF 137 (440)
++..+..++..|.++...++.+++.+......+|.+.+++..=
T Consensus 978 e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~ 1020 (1080)
T 2dfs_A 978 EAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE 1020 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555555666665555433
Done!