Your job contains 1 sequence.
>013589
MASNIYPHTLACTSKTTFRCPSNSPIWTINEIAESVNGKILKWGPPGIICTDTRILAPNK
NQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVN
MACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIG
IDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQ
ESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE
REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIK
IVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACID
LIGLVGDRVVVQCKWRKWSM
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 013589
(440 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|CHY_2073 - symbol:CHY_2073 "UDP-N-acetylmuramoyl... 419 2.9e-39 1
TIGR_CMR|BA_0246 - symbol:BA_0246 "UDP-N-acetylmuramoylal... 411 2.1e-38 1
TIGR_CMR|CBU_0124 - symbol:CBU_0124 "UDP-N-acetylmuramoyl... 361 4.1e-33 1
TIGR_CMR|SPO_1183 - symbol:SPO_1183 "UDP-N-acetylmuramoyl... 360 5.2e-33 1
UNIPROTKB|Q48EF4 - symbol:murF "UDP-N-acetylmuramoyl-trip... 352 3.7e-32 1
TIGR_CMR|SO_4223 - symbol:SO_4223 "UDP-N-acetylmuramoylal... 314 1.2e-31 2
TIGR_CMR|CPS_4469 - symbol:CPS_4469 "UDP-N-acetylmuramoyl... 342 6.2e-31 1
UNIPROTKB|P11880 - symbol:murF species:83333 "Escherichia... 340 6.9e-31 1
UNIPROTKB|Q9KPG3 - symbol:VC_2405 "UDP-N-acetylmuramoyl-t... 321 7.1e-29 1
TIGR_CMR|VC_2405 - symbol:VC_2405 "UDP-N-acetylmuramoylal... 321 7.1e-29 1
UNIPROTKB|P0A5L4 - symbol:murF "UDP-N-acetylmuramoyl-trip... 186 1.3e-19 2
TIGR_CMR|CHY_2071 - symbol:CHY_2071 "UDP-N-acetylmuramoyl... 173 3.9e-10 1
TIGR_CMR|BA_4051 - symbol:BA_4051 "UDP-N-acetylmuramoylal... 135 6.7e-06 1
TIGR_CMR|GSU_3071 - symbol:GSU_3071 "UDP-N-acetylmuramoyl... 133 1.1e-05 1
TIGR_CMR|CJE_0886 - symbol:CJE_0886 "Mur ligase family pr... 95 2.5e-05 3
UNIPROTKB|P14900 - symbol:murD species:83333 "Escherichia... 121 0.00022 1
UNIPROTKB|Q97RU8 - symbol:murD "UDP-N-acetylmuramoylalani... 120 0.00030 1
TIGR_CMR|CPS_4464 - symbol:CPS_4464 "UDP-N-acetylmuramate... 119 0.00046 1
>TIGR_CMR|CHY_2073 [details] [associations]
symbol:CHY_2073
"UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
[GO:0047480 "UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine
ligase activity" evidence=ISS] InterPro:IPR000713
InterPro:IPR004101 InterPro:IPR005863 InterPro:IPR013221
Pfam:PF01225 Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219
GO:GO:0005524 GO:GO:0005737 GO:GO:0051301 GO:GO:0008360
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0007049 GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 eggNOG:COG0770 KO:K01929 OMA:GNRNNEI GO:GO:0047480
GO:GO:0008766 PANTHER:PTHR23135:SF3 TIGRFAMs:TIGR01143
RefSeq:YP_360892.1 ProteinModelPortal:Q3AAE2 STRING:Q3AAE2
GeneID:3727096 KEGG:chy:CHY_2073 PATRIC:21277227
HOGENOM:HOG000268119 BioCyc:CHYD246194:GJCN-2072-MONOMER
Uniprot:Q3AAE2
Length = 458
Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
Identities = 113/382 (29%), Positives = 179/382 (46%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR L P F A+ G+ D HEF+ P+ KG GV+ V + Q+
Sbjct: 27 VSTDTRTLKPYA--LFVALHGEKLDGHEFV-PDAVAKGAAGVV---VERPFSINVTQIVV 80
Query: 109 NGNVNTLNSLVNMACYARNSRFXXXXXXXXXXXXXXXXXXMIALALESLGVNVFQSYGNW 168
+T +L +A Y R + A+ + NV + N+
Sbjct: 81 K---DTFRALQELALYNRQKEGLKVIGITGSNGKTTTKDLVKAVLRQKY--NVCATEKNF 135
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ D ++ ++EMGM G GEI L ++ARP+I ++ N+G++HLE L S
Sbjct: 136 NNELGVPLTLLNFDENTEVGIVEMGMRGLGEIDALCQVARPDIGIITNIGEAHLELLKSQ 195
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
E++ARAK E+ + V ++N + P + + V+K FFG R G D+ + +
Sbjct: 196 ENIARAKSELIKNLPGDGVAIINGESPYIKEIVANIPVKKYFFGHRAG-DLYIKKFSQED 254
Query: 289 GGLGVQV--VLEKEREMVKFVIPSPGLHLXXXXXXXXXXXTLFGVSLAQVGISLSNFSPV 346
GL +LE+E F +P G+H GV + + LS
Sbjct: 255 DGLRFITAGILEEE-----FFLPLFGVHNAVNALAAILTALTLGVRVPLIKKGLSEVELT 309
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES 406
MR E+ S +KI+ D YNA+P S AA+ +L G+++ +LG+M ELG E
Sbjct: 310 GMRLEIQFIGS-MKIIKDYYNASPTSMEAALKVLAGTGQKGRKIAVLGEMYELGDFETTG 368
Query: 407 HEKILSYCCDACIDLIGLVGDR 428
H ++ +D + VG +
Sbjct: 369 HRRVGEVASKLGVDFLITVGPK 390
>TIGR_CMR|BA_0246 [details] [associations]
symbol:BA_0246
"UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany
l-D-alanyl ligase" species:198094 "Bacillus anthracis str. Ames"
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
[GO:0016881 "acid-amino acid ligase activity" evidence=ISS]
InterPro:IPR000713 InterPro:IPR004101 InterPro:IPR005863
InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0007049 GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 KO:K01929 OMA:GNRNNEI GO:GO:0047480 GO:GO:0008766
PANTHER:PTHR23135:SF3 TIGRFAMs:TIGR01143 HOGENOM:HOG000268119
RefSeq:NP_842799.1 RefSeq:YP_016852.1 RefSeq:YP_026517.1
HSSP:P11880 ProteinModelPortal:Q81VG1 DNASU:1086792
EnsemblBacteria:EBBACT00000011973 EnsemblBacteria:EBBACT00000015874
EnsemblBacteria:EBBACT00000023828 GeneID:1086792 GeneID:2818849
GeneID:2852828 KEGG:ban:BA_0246 KEGG:bar:GBAA_0246 KEGG:bat:BAS0232
ProtClustDB:CLSK886741 BioCyc:BANT260799:GJAJ-254-MONOMER
BioCyc:BANT261594:GJ7F-262-MONOMER Uniprot:Q81VG1
Length = 458
Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 118/392 (30%), Positives = 184/392 (46%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTL-NSLVNMACYARNSRFXXXXXXXXXXXX 142
G V + W K N V + ++L + A+N R
Sbjct: 63 N-GAVATL-------WVKDVANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGS 114
Query: 143 XXXXXXM-IALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
I +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 175 FLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-R 233
Query: 262 VPRG---VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLXXX 318
VP V FG R D V G + +E E + F +P G H
Sbjct: 234 VPEMNLIAETVTFGDARANDY--YPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVYN 290
Query: 319 XXXXXXXXTLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 291 TLASMAIAKYFGVTWEEMKEGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFH 350
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKI 410
L+ + K++V+LGDMLELG E + H ++
Sbjct: 351 LMNGLDGFSKKIVVLGDMLELGDQEVQFHYEV 382
>TIGR_CMR|CBU_0124 [details] [associations]
symbol:CBU_0124
"UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany
l-D-alanyl ligase" species:227377 "Coxiella burnetii RSA 493"
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
[GO:0016881 "acid-amino acid ligase activity" evidence=ISS]
InterPro:IPR000713 InterPro:IPR004101 InterPro:IPR005863
InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 GO:GO:0007049 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 HOGENOM:HOG000268120 KO:K01929
OMA:GNRNNEI GO:GO:0047480 GO:GO:0008766 PANTHER:PTHR23135:SF3
TIGRFAMs:TIGR01143 HSSP:P11880 RefSeq:NP_819174.1
ProteinModelPortal:Q83F27 GeneID:1207995 KEGG:cbu:CBU_0124
PATRIC:17928933 ProtClustDB:CLSK913851
BioCyc:CBUR227377:GJ7S-129-MONOMER Uniprot:Q83F27
Length = 446
Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
Identities = 117/390 (30%), Positives = 184/390 (47%)
Query: 29 INEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
++E A+ VN + G + + TDTR + P F A+ G +FDA++FI+ + +
Sbjct: 4 LSEAAKIVNADLT--GEDTVFENVSTDTRTIQPGS--LFIALRGPNFDANDFIA-KAEEQ 58
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFXXXXXXXXXXXXXXX 145
G VG + N+V + V +TL +L +A Y R +
Sbjct: 59 GAVGAVVNRVVKT-TLPLIFVS-----DTLEALGRLARYQRE-QIPIPAIVVTGSCGKTT 111
Query: 146 XXXMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
++A G NV S ++NN +GV L+L+ + AVLE+G + GEI L
Sbjct: 112 TRALLASVFRQCG-NVLASEKSFNNNIGVPLTLLRLRPDHHYAVLELGANHPGEITYLTG 170
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT-VPR 264
+A+P + ++ N G HLE GSLE VA+AKGEIF+ V+N DD +
Sbjct: 171 LAKPSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEGLSSDGTAVINNDDHFAEFWRRLAH 230
Query: 265 GVRKVFFGWRRGCDVRLVAAQV-ANGGLGVQVVLEKEREMVKFVIPSPGLHLXXXXXXXX 323
R + FG + DV + ++G Q+VL + ++ +P G+H
Sbjct: 231 SRRIISFGINQPADVMAKNITLNSDGRPAFQLVLPTGQ--LEIQLPLIGVHNVANALAAA 288
Query: 324 XXXTLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIK---IVNDAYNANPISTRAAIDLL 380
+S + L + PV+ R LV + G + I++D+YNANP+S AAI +L
Sbjct: 289 AAAYAQQLSTDAIKAGLESVVPVKGR---LVEQKGYRGAIIIDDSYNANPLSVSAAIAVL 345
Query: 381 KDIACNGKRVVILGDMLELGSTERESHEKI 410
G V++LGDMLELG + H++I
Sbjct: 346 AKRP--GHSVLVLGDMLELGQGAEQFHQEI 373
>TIGR_CMR|SPO_1183 [details] [associations]
symbol:SPO_1183
"UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0009252 "peptidoglycan
biosynthetic process" evidence=ISS] [GO:0047480
"UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
activity" evidence=ISS] InterPro:IPR000713 InterPro:IPR004101
InterPro:IPR005863 InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875
Pfam:PF08245 UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737
GO:GO:0051301 GO:GO:0008360 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0007049 GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 HOGENOM:HOG000268120 KO:K01929
GO:GO:0047480 GO:GO:0008766 PANTHER:PTHR23135:SF3
TIGRFAMs:TIGR01143 RefSeq:YP_166430.1 ProteinModelPortal:Q5LU75
GeneID:3193363 KEGG:sil:SPO1183 PATRIC:23375673 OMA:HCVGPRM
ProtClustDB:CLSK933457 Uniprot:Q5LU75
Length = 464
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 120/407 (29%), Positives = 182/407 (44%)
Query: 26 IWTINEIAESVNGKIL-KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+WT E AE+ G+ L W GI DTR +AP F A+T D H+F++ L
Sbjct: 3 LWTAAEAAEATGGRALGDWQVSGI-SIDTRTIAPG--DLFVALTAAR-DGHDFVAQAL-D 57
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGN-VNTLNSLVNMACYARNSRFXXXXXXXXXXXXX 143
KG + +++ +G V +G V+ + + + A +R
Sbjct: 58 KGAGAALVSRI----PEG-VGEDGRLLLVDDVQTGLEALGRAGRARAQARVVAVTGSVGK 112
Query: 144 XXXXXMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
M+A L + G S ++NN GV L+L + R + AV+E+GM+ GEI L
Sbjct: 113 TSTKEMLAAMLGAQG-RTHASVASYNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEIAPL 171
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL-TV 262
AR ARP + +V V HLE+ + +AR K I + + G V VLNAD L
Sbjct: 172 ARQARPHVAMVTTVAAVHLEAFDDVAGIAREKAAIMEGLEPGGVAVLNADIAEADILRAA 231
Query: 263 PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLXXXXXXX 322
RG R++ FG R D RL +VA+G + + V F + S G H
Sbjct: 232 ARGARQLSFG-RAAQDYRLTGVEVADGMTHARA--DTPAGPVSFTLQSAGTHFAMNALGA 288
Query: 323 XXXXTLFGVSLAQVGISLSNFSPVQMR-SELLVSRSG--IKIVNDAYNANPISTRAAIDL 379
G Q L ++P + R + +S +G + + +D+YNANP S AA+++
Sbjct: 289 LACCDALGADAGQSLQGLERWTPYKGRGARETISLAGGPVTLFDDSYNANPTSVGAALEV 348
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L +RV LGDM ELG E H + + +D + +G
Sbjct: 349 LAGTP-GTRRVAFLGDMKELGPEELPLHAGLAALPAMERVDQVHCIG 394
>UNIPROTKB|Q48EF4 [details] [associations]
symbol:murF
"UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase"
species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
[GO:0047480 "UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine
ligase activity" evidence=ISS] InterPro:IPR000713
InterPro:IPR004101 InterPro:IPR005863 InterPro:IPR013221
Pfam:PF01225 Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219
GO:GO:0005524 GO:GO:0005737 GO:GO:0051301 GO:GO:0008360
GO:GO:0007049 EMBL:CP000058 GenomeReviews:CP000058_GR GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 eggNOG:COG0770 HOGENOM:HOG000268120 KO:K01929
OMA:GNRNNEI GO:GO:0047480 GO:GO:0008766 PANTHER:PTHR23135:SF3
TIGRFAMs:TIGR01143 RefSeq:YP_276234.1 ProteinModelPortal:Q48EF4
STRING:Q48EF4 GeneID:3555860 KEGG:psp:PSPPH_4112 PATRIC:19977689
ProtClustDB:CLSK868642 Uniprot:Q48EF4
Length = 456
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 95/366 (25%), Positives = 161/366 (43%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R + P Q F A+TG FD HE++ ++ KG VG + + + V
Sbjct: 28 VSTDSRGIQPG--QLFVALTGPRFDGHEYLE-QVAAKGAVGALVEREVQGASLPQLVV-- 82
Query: 109 NGNVNTLNSLVNMACYARNSRFXXXXXXXXXXXXXXXXXXMIALALESLGVNVFQSYGNW 168
++T +L + RN+ M+A L + G V + GN
Sbjct: 83 ---LDTRKALAQLGAMNRNAFIDKPVAAMTGSSGKTTVKEMLASILRTRGT-VLATRGNL 138
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ + AV+E+G S GEI + +P + ++ N G +H+ G
Sbjct: 139 NNELGVPLTLLELASEHSAAVIELGASRVGEIAFTVSLTKPHVAIITNAGTAHVGEFGGP 198
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
+ + AKGEI + VLN +D G R + L A+ ++N
Sbjct: 199 DKIVEAKGEILEGLNASGTAVLNLEDKAFPVWRKRAGNRNILTFALADPAADLHASDLSN 258
Query: 289 GGLGVQ-VVLEKEREMVKFVIPSPGLHLXXXXXXXXXXXTLFGVSLAQVGISLSNFSPVQ 347
G + + + + G H GV+L + L+N PV+
Sbjct: 259 DARGCPGFTINSPLGVAQVQLNLLGAHNVTNALAAAAAACALGVTLEGIVAGLNNVQPVK 318
Query: 348 MRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESH 407
R+ + ++ +G ++++D YNANP S AA+D+L G+ V++LGD+ ELG + H
Sbjct: 319 GRAVVQIASNGTRVIDDTYNANPASINAAVDILTGFT--GRTVLVLGDIGELGEWAEQGH 376
Query: 408 EKILSY 413
+ +Y
Sbjct: 377 RDVGAY 382
>TIGR_CMR|SO_4223 [details] [associations]
symbol:SO_4223
"UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany
l-D-alanyl ligase" species:211586 "Shewanella oneidensis MR-1"
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
[GO:0016881 "acid-amino acid ligase activity" evidence=ISS]
InterPro:IPR000713 InterPro:IPR004101 InterPro:IPR005863
InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 GO:GO:0007049 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 HOGENOM:HOG000268120 KO:K01929
OMA:GNRNNEI GO:GO:0047480 GO:GO:0008766 PANTHER:PTHR23135:SF3
TIGRFAMs:TIGR01143 HSSP:P11880 RefSeq:NP_719751.1
ProteinModelPortal:Q8E9P4 GeneID:1171827 KEGG:son:SO_4223
PATRIC:23528084 ProtClustDB:CLSK907557 Uniprot:Q8E9P4
Length = 460
Score = 314 (115.6 bits), Expect = 1.2e-31, Sum P(2) = 1.2e-31
Identities = 86/283 (30%), Positives = 137/283 (48%)
Query: 149 MIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMAR 208
MIA L S V + GN+NN +GV L+L+ + V E+G + KGEI + + R
Sbjct: 117 MIATIL-SAKHQVLYTAGNFNNEIGVPLTLLRLTPEDKYGVFELGANHKGEIDYTSGLVR 175
Query: 209 PEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP-RGVR 267
P + +V NVG +HLE GS VA+AK EI+ + ++NADD + V + +
Sbjct: 176 PHVALVNNVGSAHLEGFGSQAGVAQAKSEIYNHLQEDGTAIINADDAFADVMRVKAKHYK 235
Query: 268 KVFFGWRRGCDVR----LVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLXXXXXXXX 323
++ F + G R + AN + +L E + V+P G H
Sbjct: 236 QLSFSQQEGAAKRQIDVIATGHKANSDGCYRFMLNYAGESCEVVLPLAGRHQVSNALAAA 295
Query: 324 XXXTLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
G++L ++ LS +PV+ R + +++++D+YNANP+S AAI LK+I
Sbjct: 296 SVCIALGLNLTEIAEGLSQLTPVKGRMQP-TQLGRVRLIDDSYNANPVSVGAAIAWLKEI 354
Query: 384 ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+ N R ++LGD+ ELG H ++ ID + G
Sbjct: 355 SEN--RCLVLGDLGELGDNAPLLHAELGQLARQQGIDALFCTG 395
Score = 49 (22.3 bits), Expect = 1.2e-31, Sum P(2) = 1.2e-31
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI 91
+ +D+R + P F A+ G FD H+F + + G + ++
Sbjct: 27 LSSDSRKIGPAT--LFVALKGDRFDGHDFAATAIEN-GAIALL 66
>TIGR_CMR|CPS_4469 [details] [associations]
symbol:CPS_4469
"UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0009252
"peptidoglycan biosynthetic process" evidence=ISS] [GO:0016881
"acid-amino acid ligase activity" evidence=ISS] [GO:0047480
"UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
activity" evidence=ISS] InterPro:IPR000713 InterPro:IPR004101
InterPro:IPR005863 InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875
Pfam:PF08245 UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737
GO:GO:0051301 GO:GO:0008360 GO:GO:0007049 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009252 Gene3D:3.40.1190.10
Gene3D:3.90.190.20 SUPFAM:SSF53244 SUPFAM:SSF53623 eggNOG:COG0770
HOGENOM:HOG000268120 KO:K01929 GO:GO:0047480 GO:GO:0008766
PANTHER:PTHR23135:SF3 TIGRFAMs:TIGR01143 RefSeq:YP_271117.1
ProteinModelPortal:Q47VQ5 STRING:Q47VQ5 GeneID:3520386
KEGG:cps:CPS_4469 PATRIC:21471771 OMA:CINLALF
BioCyc:CPSY167879:GI48-4478-MONOMER Uniprot:Q47VQ5
Length = 513
Score = 342 (125.4 bits), Expect = 6.2e-31, P = 6.2e-31
Identities = 110/373 (29%), Positives = 177/373 (47%)
Query: 52 DTRILAPNKNQW--FFAITGQHFDAHEFISPELYGKGC-VGVIGNQVCNNWDKGFVQVEG 108
D+R + + ++ F A+ G +FD H F + ++ +GC + ++ + + D + V
Sbjct: 39 DSRAIKEHSDKCSAFLALKGPNFDGHRF-AEQVIKQGCQLLIVDHHLSAVTDTAQLIVS- 96
Query: 109 NGNVNTLNSLVNMACYARNSRFXXXXXXXXXXXXXXXXXXMIALALESLGVNVFQSYGNW 168
+T +L +A + + M+A L LG V + GN+
Sbjct: 97 ----DTRIALGKIAAFVKKE-VAPKTVGITGSSGKTTVKEMVAAILSRLG-KVLATNGNF 150
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ +D + D AV+EMG + GEI + +P++ V+ N+ +HLE G L
Sbjct: 151 NNDIGVPLTLLRLDNSHDFAVIEMGANHMGEIAYTTALTQPDVAVINNIAAAHLEGFGDL 210
Query: 229 EDVARAKGEIFQESKLGD--VCVLNADDPLVAN----LTVPRGVRKVFFGWRRGCDVRLV 282
VARAKGEIF S LG+ V + N D + LT + VR + C V
Sbjct: 211 CGVARAKGEIF--SGLGENGVALYNKDTKYTSKWQWRLT-DKTVRTFSCVNKANCYSEKV 267
Query: 283 AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLXXXXXXXXXXXTLFGVSLAQVGISLSN 342
+ NG L+ E+ + PG H FG SL + + L+
Sbjct: 268 SLD-KNGC--ASFTLQSEQGSCVMTLTVPGKHNVCNAVAAAAIALEFGASLEDIQLGLAQ 324
Query: 343 FSPVQMR---SELLVSRSG--IKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDML 397
PV+ R +L ++G +K+++D+YNAN S +AA LL GK+++ILGDM
Sbjct: 325 MQPVKGRLNLHQLENKKTGCNVKLIDDSYNANLESAKAAAQLLSSYP--GKQLLILGDMG 382
Query: 398 ELGSTERESHEKI 410
ELGS R H+++
Sbjct: 383 ELGSEARSYHQEV 395
>UNIPROTKB|P11880 [details] [associations]
symbol:murF species:83333 "Escherichia coli K-12"
[GO:0047480 "UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine
ligase activity" evidence=IEA;IDA] [GO:0009058 "biosynthetic
process" evidence=IEA] [GO:0008766
"UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl
-D-alanine ligase activity" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0008360 "regulation of cell shape"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0071555
"cell wall organization" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0009252 "peptidoglycan biosynthetic process" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000713
InterPro:IPR004101 InterPro:IPR005863 InterPro:IPR013221
Pfam:PF01225 Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219
GO:GO:0005524 GO:GO:0005737 GO:GO:0051301 GO:GO:0008360 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0007049 GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 EMBL:X55034 EMBL:X15432 EMBL:U67891
EMBL:U67893 PIR:F64730 RefSeq:NP_414628.1 RefSeq:YP_488391.1
PDB:1GG4 PDBsum:1GG4 ProteinModelPortal:P11880 SMR:P11880
DIP:DIP-10281N IntAct:P11880 MINT:MINT-1227223 PRIDE:P11880
EnsemblBacteria:EBESCT00000003335 EnsemblBacteria:EBESCT00000003336
EnsemblBacteria:EBESCT00000003337 EnsemblBacteria:EBESCT00000003338
EnsemblBacteria:EBESCT00000015539 GeneID:12932648 GeneID:944813
KEGG:ecj:Y75_p0085 KEGG:eco:b0086 PATRIC:32115277 EchoBASE:EB0617
EcoGene:EG10622 eggNOG:COG0770 HOGENOM:HOG000268120 KO:K01929
OMA:GNRNNEI ProtClustDB:PRK10773
BioCyc:EcoCyc:UDP-NACMURALGLDAPAALIG-MONOMER
BioCyc:ECOL316407:JW0084-MONOMER
BioCyc:MetaCyc:UDP-NACMURALGLDAPAALIG-MONOMER SABIO-RK:P11880
BindingDB:P11880 ChEMBL:CHEMBL2540 EvolutionaryTrace:P11880
Genevestigator:P11880 GO:GO:0047480 GO:GO:0008766
PANTHER:PTHR23135:SF3 TIGRFAMs:TIGR01143 Uniprot:P11880
Length = 452
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 110/400 (27%), Positives = 175/400 (43%)
Query: 28 TINEIAESVNGKILKWGPP-GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKG 86
T++++ + +NG++ + TDTR L P F A+ G+ FDAH+F G G
Sbjct: 5 TLSQLTDILNGELQGADITLDAVTTDTRKLTPGC--LFVALKGERFDAHDFADQAKAG-G 61
Query: 87 CVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFXXXXXXXXXXXXXXXX 146
++ V D Q+ +T + +A + R +
Sbjct: 62 AGALL---VSRPLDIDLPQLIVK---DTRLAFGELAAWVRQ-QVPARVVALTGSSGKTSV 114
Query: 147 XXMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARM 206
M A L G N + GN NN +GV ++L+ + D AV+E+G + +GEI +
Sbjct: 115 KEMTAAILSQCG-NTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSL 173
Query: 207 ARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGV 266
RPE +V N+ +HLE GSL VA+AKGEIF + ++NAD+ N G
Sbjct: 174 TRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIGS 233
Query: 267 RKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLXXXXXXXXXXX 326
RKV+ + A + G + L+ V ++P PG H
Sbjct: 234 RKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALS 293
Query: 327 TLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACN 386
G +L + L+N V R + +++D+YNAN S AA+ +L ++
Sbjct: 294 MSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQVLAEMP-- 351
Query: 387 GKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
G RV+++GDM ELG+ H ++ A ID + VG
Sbjct: 352 GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVG 391
>UNIPROTKB|Q9KPG3 [details] [associations]
symbol:VC_2405
"UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
[GO:0016881 "acid-amino acid ligase activity" evidence=ISS]
InterPro:IPR000713 InterPro:IPR004101 InterPro:IPR005863
InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0007049
GO:GO:0016881 GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 KO:K01929 OMA:GNRNNEI GO:GO:0047480
GO:GO:0008766 PANTHER:PTHR23135:SF3 TIGRFAMs:TIGR01143 HSSP:P11880
PIR:A82082 RefSeq:NP_232035.1 ProteinModelPortal:Q9KPG3
DNASU:2613074 GeneID:2613074 KEGG:vch:VC2405 PATRIC:20083831
ProtClustDB:CLSK874790 Uniprot:Q9KPG3
Length = 453
Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
Identities = 105/391 (26%), Positives = 178/391 (45%)
Query: 29 INEIAESVNGKIL-KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
+++++ +N +++ + + TD+R + P + F A+ G+ FDAH+F S + G G
Sbjct: 6 LSQLSSVLNARLIGEDRAVSAVSTDSRAI-PAE-ALFVALVGERFDAHDFASQAVTG-GA 62
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFXXXXXXXXXXXXXXXXX 147
V ++ + + V + + L S V+ C
Sbjct: 63 VALLVERELDAECSQLVVADTKQALGQLGSWVHAQCQTPT-------VAITGSCGKTTVK 115
Query: 148 XMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA 207
M+A L G V + GN+NN +GV L+L+ D AV+E+G + GEI +
Sbjct: 116 EMVASILSQKG-QVLYTQGNFNNDIGVPLTLLRSTTEDDYAVIELGANHVGEIAYTTALV 174
Query: 208 RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD-------PLVANL 260
+P++ +V NV +HLE GS++ V RAKGEI+Q + G V ++N D ++A+
Sbjct: 175 KPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADK 234
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGV-QVVLEKEREMVKFVIPSPGLHLXXXX 319
TV K F D V LG+ L V + G H
Sbjct: 235 TV-----KTFSATDHNAD--FYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANA 287
Query: 320 XXXXXXXTLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
G SLA++G L++ S V+ R ++ R I +++D+YNA+ + +AA++L
Sbjct: 288 LAAAALSLEMGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVEL 347
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKI 410
L + R +ILG+M ELG H+++
Sbjct: 348 LGSFSA--VRWLILGNMAELGDESLALHQQV 376
>TIGR_CMR|VC_2405 [details] [associations]
symbol:VC_2405
"UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany
l-D-alanyl ligase" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
[GO:0016881 "acid-amino acid ligase activity" evidence=ISS]
InterPro:IPR000713 InterPro:IPR004101 InterPro:IPR005863
InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0007049
GO:GO:0016881 GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 KO:K01929 OMA:GNRNNEI GO:GO:0047480
GO:GO:0008766 PANTHER:PTHR23135:SF3 TIGRFAMs:TIGR01143 HSSP:P11880
PIR:A82082 RefSeq:NP_232035.1 ProteinModelPortal:Q9KPG3
DNASU:2613074 GeneID:2613074 KEGG:vch:VC2405 PATRIC:20083831
ProtClustDB:CLSK874790 Uniprot:Q9KPG3
Length = 453
Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
Identities = 105/391 (26%), Positives = 178/391 (45%)
Query: 29 INEIAESVNGKIL-KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
+++++ +N +++ + + TD+R + P + F A+ G+ FDAH+F S + G G
Sbjct: 6 LSQLSSVLNARLIGEDRAVSAVSTDSRAI-PAE-ALFVALVGERFDAHDFASQAVTG-GA 62
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFXXXXXXXXXXXXXXXXX 147
V ++ + + V + + L S V+ C
Sbjct: 63 VALLVERELDAECSQLVVADTKQALGQLGSWVHAQCQTPT-------VAITGSCGKTTVK 115
Query: 148 XMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA 207
M+A L G V + GN+NN +GV L+L+ D AV+E+G + GEI +
Sbjct: 116 EMVASILSQKG-QVLYTQGNFNNDIGVPLTLLRSTTEDDYAVIELGANHVGEIAYTTALV 174
Query: 208 RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD-------PLVANL 260
+P++ +V NV +HLE GS++ V RAKGEI+Q + G V ++N D ++A+
Sbjct: 175 KPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADK 234
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGV-QVVLEKEREMVKFVIPSPGLHLXXXX 319
TV K F D V LG+ L V + G H
Sbjct: 235 TV-----KTFSATDHNAD--FYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANA 287
Query: 320 XXXXXXXTLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
G SLA++G L++ S V+ R ++ R I +++D+YNA+ + +AA++L
Sbjct: 288 LAAAALSLEMGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVEL 347
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKI 410
L + R +ILG+M ELG H+++
Sbjct: 348 LGSFSA--VRWLILGNMAELGDESLALHQQV 376
>UNIPROTKB|P0A5L4 [details] [associations]
symbol:murF
"UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase"
species:1773 "Mycobacterium tuberculosis" [GO:0040007 "growth"
evidence=IMP] InterPro:IPR000713 InterPro:IPR004101
InterPro:IPR005863 InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875
Pfam:PF08245 UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737
GO:GO:0040007 GO:GO:0051301 GO:GO:0008360 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR EMBL:BX842578
GO:GO:0007049 GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 eggNOG:COG0770 HOGENOM:HOG000268120
KO:K01929 OMA:GNRNNEI GO:GO:0047480 GO:GO:0008766
PANTHER:PTHR23135:SF3 TIGRFAMs:TIGR01143 PIR:A70580
RefSeq:NP_216673.1 RefSeq:NP_336686.1 RefSeq:YP_006515576.1
ProteinModelPortal:P0A5L4 SMR:P0A5L4 PRIDE:P0A5L4
EnsemblBacteria:EBMYCT00000003752 EnsemblBacteria:EBMYCT00000072617
GeneID:13316968 GeneID:887826 GeneID:924245 KEGG:mtc:MT2216
KEGG:mtu:Rv2157c KEGG:mtv:RVBD_2157c PATRIC:18126630
TubercuList:Rv2157c ProtClustDB:CLSK791663
BioCyc:MetaCyc:MONOMER-15227 Uniprot:P0A5L4
Length = 510
Score = 186 (70.5 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 50/122 (40%), Positives = 64/122 (52%)
Query: 149 MIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMAR 208
++A L LG V G++NN +G +++ R D +LEM G I LA +A
Sbjct: 146 LMAAVLAPLG-EVVAPPGSFNNELGHPWTVLRATRRTDYLILEMAARHHGNIAALAEIAP 204
Query: 209 PEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA---NLTVPRG 265
P I VVLNVG +HL GS E +A+ K E+ Q VLNADDP VA LT R
Sbjct: 205 PSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNADDPAVAAMAKLTAARV 264
Query: 266 VR 267
VR
Sbjct: 265 VR 266
Score = 120 (47.3 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 330 GVSLAQVGISLSNFSPVQM-RSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA---- 384
G S+ QV +L+ PV R ++ G+ +++DAYNANP S RA + L IA
Sbjct: 325 GASVEQVAAALTAAPPVSRHRMQVTTRGDGVTVIDDAYNANPDSMRAGLQALAWIAHQPE 384
Query: 385 CNGKRVVILGDMLELGSTERESHEKI 410
+ +LG+M ELG H++I
Sbjct: 385 ATRRSWAVLGEMAELGEDAIAEHDRI 410
>TIGR_CMR|CHY_2071 [details] [associations]
symbol:CHY_2071 "UDP-N-acetylmuramoylalanine--D-glutamate
ligase" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase
activity" evidence=ISS] [GO:0009252 "peptidoglycan biosynthetic
process" evidence=ISS] HAMAP:MF_00639 InterPro:IPR004101
InterPro:IPR005762 InterPro:IPR006367 InterPro:IPR013221
Pfam:PF02875 Pfam:PF08245 Pfam:PF13241 UniPathway:UPA00219
InterPro:IPR016040 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 Gene3D:3.40.50.720 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0007049 GO:GO:0009252 GO:GO:0019354
GO:GO:0043115 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 eggNOG:COG0771 HOGENOM:HOG000049428
KO:K01925 OMA:RCGELDV GO:GO:0008764 PANTHER:PTHR23135:SF2
TIGRFAMs:TIGR01087 RefSeq:YP_360890.1 STRING:Q3AAE4 GeneID:3727011
KEGG:chy:CHY_2071 PATRIC:21277223 ProtClustDB:PRK14106
BioCyc:CHYD246194:GJCN-2070-MONOMER Uniprot:Q3AAE4
Length = 451
Score = 173 (66.0 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 68/240 (28%), Positives = 104/240 (43%)
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LE + +P++ V+LN+ HL+ +LE AK IF DV VLN DDP + +L
Sbjct: 167 LETIKSFKPKVAVLLNLTPDHLDRHKTLEGYLEAKARIFINQDRTDVTVLNYDDPRIRSL 226
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFV-IPSPGLHLXXXX 319
R +F + + + V G + V+ L E E++ +P PG H
Sbjct: 227 GRKTPGRVFYFSQKEELEEGVF---VKKGKIVVRS-LGVEEEIIDIENLPLPGPHNLENA 282
Query: 320 XXXXXXXTLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
FGVS + L NF V R E + +G+ VND+ NP ST A++
Sbjct: 283 LATVAACWSFGVSGKNIERGLRNFQGVAHRLEKVAEINGVLYVNDSKGTNPDSTIKALNS 342
Query: 380 LKD--IACNGKRVVILGDMLELGSTERESHEKI-----LSYCCDACIDLIGLVG-DRVVV 431
+ + G R G+ G RE EK+ + C + + + +VG D+ VV
Sbjct: 343 YERPIVLIAGGRNK--GN--SFGELAREIREKVRFTILVGECREELKEALEMVGYDKYVV 398
>TIGR_CMR|BA_4051 [details] [associations]
symbol:BA_4051 "UDP-N-acetylmuramoylalanine--D-glutamate
ligase" species:198094 "Bacillus anthracis str. Ames" [GO:0008764
"UDP-N-acetylmuramoylalanine-D-glutamate ligase activity"
evidence=ISS] [GO:0009252 "peptidoglycan biosynthetic process"
evidence=ISS] HAMAP:MF_00639 InterPro:IPR004101 InterPro:IPR005762
InterPro:IPR013221 Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219
InterPro:IPR016040 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 Gene3D:3.40.50.720 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0007049 GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 RefSeq:NP_846291.1 RefSeq:YP_020693.1
RefSeq:YP_030014.1 ProteinModelPortal:Q81WC9 IntAct:Q81WC9
DNASU:1086094 EnsemblBacteria:EBBACT00000009521
EnsemblBacteria:EBBACT00000014653 EnsemblBacteria:EBBACT00000023364
GeneID:1086094 GeneID:2819652 GeneID:2850427 KEGG:ban:BA_4051
KEGG:bar:GBAA_4051 KEGG:bat:BAS3763 eggNOG:COG0771
HOGENOM:HOG000049428 KO:K01925 OMA:RCGELDV ProtClustDB:PRK02472
BioCyc:BANT260799:GJAJ-3821-MONOMER
BioCyc:BANT261594:GJ7F-3939-MONOMER GO:GO:0008764
PANTHER:PTHR23135:SF2 TIGRFAMs:TIGR01087 Uniprot:Q81WC9
Length = 450
Score = 135 (52.6 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 46/170 (27%), Positives = 76/170 (44%)
Query: 208 RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVR 267
+P+I LN+ ++HL+ G+ ++ AK IF+ D V+NADD V L+ +
Sbjct: 180 QPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDYSVINADDADVMALSAYSKGQ 239
Query: 268 KVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLXXXXXXXXXXXT 327
KV F + + A + + L + EK E+ V+P G H
Sbjct: 240 KVLFSTTKEIED---GACIKDNALYFKA--EKVVEVDDIVLP--GQHNLENILAAMSIAK 292
Query: 328 LFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
L GVS + L F+ V+ R E + + + K ND+ N ++T A+
Sbjct: 293 LLGVSNEAITAVLKRFTGVKHRLEYVTTINNRKFYNDSKATNMLATEKAL 342
>TIGR_CMR|GSU_3071 [details] [associations]
symbol:GSU_3071 "UDP-N-acetylmuramoylalanine--D-glutamate
ligase" species:243231 "Geobacter sulfurreducens PCA" [GO:0008764
"UDP-N-acetylmuramoylalanine-D-glutamate ligase activity"
evidence=ISS] [GO:0009252 "peptidoglycan biosynthetic process"
evidence=ISS] HAMAP:MF_00639 InterPro:IPR004101 InterPro:IPR005762
InterPro:IPR013221 Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219
InterPro:IPR016040 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 Gene3D:3.40.50.720 GO:GO:0007049 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0009252 Gene3D:3.40.1190.10
Gene3D:3.90.190.20 SUPFAM:SSF53244 SUPFAM:SSF53623 eggNOG:COG0771
HOGENOM:HOG000049428 KO:K01925 OMA:RCGELDV GO:GO:0008764
PANTHER:PTHR23135:SF2 TIGRFAMs:TIGR01087 RefSeq:NP_954113.1
ProteinModelPortal:Q748D4 GeneID:2686310 KEGG:gsu:GSU3071
PATRIC:22028993 ProtClustDB:CLSK829090
BioCyc:GSUL243231:GH27-3020-MONOMER Uniprot:Q748D4
Length = 452
Score = 133 (51.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 58/221 (26%), Positives = 91/221 (41%)
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN N + + L+ AVD V+E+ LE R RP + V+LN+ + HL+
Sbjct: 141 GNIGNPL---IELVETGAAVDRVVVEISSFQ----LEWIRSFRPTVAVLLNITEDHLDRY 193
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQ 285
+ ++ AK IF+ D VLN DDP+VA L R VF R+ R +
Sbjct: 194 ATYQEYIDAKARIFKNQTASDWAVLNVDDPIVAGLA-GRTCAAVFPMSRQ----RELGEG 248
Query: 286 V--ANGGLGVQVVLEKEREMV-KFVIPSPGLHLXXXXXXXXXXXTLFGVSLAQVGISLSN 342
+ +G + + +ER +F I G+H L G + +
Sbjct: 249 IFYRDGAIIFRHAGRQERFPTDRFRIT--GVHNIENIMASLAAALLLGCDADRALACVEA 306
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
F + R EL+ +G++ D+ N S A+ DI
Sbjct: 307 FGGLPHRMELVRELNGVRYFEDSKATNVGSVEKALASFNDI 347
>TIGR_CMR|CJE_0886 [details] [associations]
symbol:CJE_0886 "Mur ligase family protein" species:195099
"Campylobacter jejuni RM1221" [GO:0003824 "catalytic activity"
evidence=ISS] [GO:0008152 "metabolic process" evidence=ISS]
InterPro:IPR004101 InterPro:IPR005863 InterPro:IPR013221
Pfam:PF08245 GO:GO:0005524 GO:GO:0005737 GO:GO:0009058
GO:GO:0051301 GO:GO:0008360 EMBL:CP000025 GenomeReviews:CP000025_GR
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 eggNOG:COG0770 KO:K01929 GO:GO:0008766
PANTHER:PTHR23135:SF3 RefSeq:YP_178888.1 ProteinModelPortal:Q5HUZ7
STRING:Q5HUZ7 GeneID:3231399 KEGG:cjr:CJE0886 PATRIC:20043539
HOGENOM:HOG000102527 OMA:FANDAPN ProtClustDB:CLSK872433
BioCyc:CJEJ195099:GJC0-906-MONOMER Uniprot:Q5HUZ7
Length = 475
Score = 95 (38.5 bits), Expect = 2.5e-05, Sum P(3) = 2.5e-05
Identities = 25/87 (28%), Positives = 43/87 (49%)
Query: 162 FQSYG---NWNNRVGVALSLIG-IDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNV 217
F+SY + N +G+ + + + I + E G KG+I E+ R +P I +V +
Sbjct: 181 FKSYKTPRSVNTLLGIVADINNNLSQDTQIYIAEAGARLKGDIDEITRFLQPHISIVGEI 240
Query: 218 GDSHLESLGSLEDVARAKGEIFQESKL 244
G+ HLE S+E++ K E +L
Sbjct: 241 GNVHLEYFKSVENILSTKLEALNSKRL 267
Score = 81 (33.6 bits), Expect = 2.5e-05, Sum P(3) = 2.5e-05
Identities = 23/90 (25%), Positives = 44/90 (48%)
Query: 330 GVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKR 389
G+ L ++ + N + V+ R ++L SR I++D +N N + L K G++
Sbjct: 338 GIKLEKIQKQVLNINSVEHRLQVL-SREPKFIIDDGFNGNFKGMSTSYKLCKSY--KGRK 394
Query: 390 VVILGDMLELGSTERESHEKILSYCCDACI 419
V++ ++E+ E KI++ C D I
Sbjct: 395 VLVSPGIVEVSEEENIKLAKIINECFDLAI 424
Score = 37 (18.1 bits), Expect = 2.5e-05, Sum P(3) = 2.5e-05
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 25 PIWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFF 65
P++++ A ++ IL + GI D +++ +K +WFF
Sbjct: 61 PLYSLAYFA-LIHTPILYFWNKGI---DKKLVFTSKVKWFF 97
>UNIPROTKB|P14900 [details] [associations]
symbol:murD species:83333 "Escherichia coli K-12"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0009058 "biosynthetic
process" evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
[GO:0008360 "regulation of cell shape" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0071555 "cell wall organization"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008764
"UDP-N-acetylmuramoylalanine-D-glutamate ligase activity"
evidence=IEA;IDA] [GO:0009252 "peptidoglycan biosynthetic process"
evidence=IEA] HAMAP:MF_00639 InterPro:IPR004101 InterPro:IPR005762
InterPro:IPR013221 Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219
InterPro:IPR016040 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 Gene3D:3.40.50.720 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0007049
GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 EMBL:X55034 EMBL:M30807 EMBL:X51584
eggNOG:COG0771 KO:K01925 OMA:RCGELDV GO:GO:0008764
PANTHER:PTHR23135:SF2 TIGRFAMs:TIGR01087 HOGENOM:HOG000049427
EMBL:X17609 PIR:S08396 RefSeq:NP_414630.1 RefSeq:YP_488393.1
PDB:1E0D PDB:1EEH PDB:1UAG PDB:2JFF PDB:2JFG PDB:2JFH PDB:2UAG
PDB:2UUO PDB:2UUP PDB:2VTD PDB:2VTE PDB:2WJP PDB:2X5O PDB:2XPC
PDB:2Y1O PDB:2Y66 PDB:2Y67 PDB:2Y68 PDB:3UAG PDB:4UAG PDBsum:1E0D
PDBsum:1EEH PDBsum:1UAG PDBsum:2JFF PDBsum:2JFG PDBsum:2JFH
PDBsum:2UAG PDBsum:2UUO PDBsum:2UUP PDBsum:2VTD PDBsum:2VTE
PDBsum:2WJP PDBsum:2X5O PDBsum:2XPC PDBsum:2Y1O PDBsum:2Y66
PDBsum:2Y67 PDBsum:2Y68 PDBsum:3UAG PDBsum:4UAG
ProteinModelPortal:P14900 SMR:P14900 DIP:DIP-10279N IntAct:P14900
MINT:MINT-1269366 PRIDE:P14900 EnsemblBacteria:EBESCT00000003340
EnsemblBacteria:EBESCT00000003341 EnsemblBacteria:EBESCT00000003342
EnsemblBacteria:EBESCT00000003343 EnsemblBacteria:EBESCT00000016281
GeneID:12932483 GeneID:944818 KEGG:ecj:Y75_p0087 KEGG:eco:b0088
PATRIC:32115281 EchoBASE:EB0615 EcoGene:EG10620
ProtClustDB:PRK03806 BioCyc:EcoCyc:UDP-NACMURALA-GLU-LIG-MONOMER
BioCyc:ECOL316407:JW0086-MONOMER
BioCyc:MetaCyc:UDP-NACMURALA-GLU-LIG-MONOMER SABIO-RK:P14900
BindingDB:P14900 ChEMBL:CHEMBL4732 EvolutionaryTrace:P14900
Genevestigator:P14900 Uniprot:P14900
Length = 438
Score = 121 (47.7 bits), Expect = 0.00022, P = 0.00022
Identities = 56/206 (27%), Positives = 93/206 (45%)
Query: 177 SLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG-SLEDVARAK 235
+L+ +D ++ VLE+ LE + +LNV + H++ L+ AK
Sbjct: 144 ALMLLDDECELYVLELSSFQ----LETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK 199
Query: 236 GEIFQESKLGDVCVLNADDPLVANLTVP-RGV--RKVFFGWRRGCDVRLVAAQVANGGLG 292
I++ +K VCV+NADD L T+P RG R V FG G D L Q G
Sbjct: 200 LRIYENAK---VCVVNADDAL----TMPIRGADERCVSFGVNMG-DYHLNHQQ---GETW 248
Query: 293 VQVVLEKEREMVKFVIPSPGLHLXXXXXXXXXXXTLFGVSLAQVGISLSNFSPVQMRSEL 352
++V EK + + + G H G+ A +L+ F+ + R E+
Sbjct: 249 LRVKGEKVLNVKEMKLS--GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEV 306
Query: 353 LVSRSGIKIVNDAYNANPISTRAAID 378
++ +G++ +ND+ N ST AA++
Sbjct: 307 VLEHNGVRWINDSKATNVGSTEAALN 332
>UNIPROTKB|Q97RU8 [details] [associations]
symbol:murD "UDP-N-acetylmuramoylalanine--D-glutamate
ligase" species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_00639 InterPro:IPR004101
InterPro:IPR005762 InterPro:IPR013221 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 InterPro:IPR016040 GO:GO:0005524 GO:GO:0005737
GO:GO:0051301 GO:GO:0008360 Gene3D:3.40.50.720 GO:GO:0007049
EMBL:AE005672 GenomeReviews:AE005672_GR GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 eggNOG:COG0771 HOGENOM:HOG000049428 KO:K01925
OMA:RCGELDV ProtClustDB:PRK02472 GO:GO:0008764
PANTHER:PTHR23135:SF2 TIGRFAMs:TIGR01087 PIR:H95079
RefSeq:NP_345193.1 ProteinModelPortal:Q97RU8
EnsemblBacteria:EBSTRT00000027216 GeneID:930638 KEGG:spn:SP_0688
PATRIC:19705737 BindingDB:Q97RU8 ChEMBL:CHEMBL4359 Uniprot:Q97RU8
Length = 450
Score = 120 (47.3 bits), Expect = 0.00030, P = 0.00030
Identities = 49/188 (26%), Positives = 75/188 (39%)
Query: 209 PEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRK 268
PEI V+ N+ +H++ GS + AK I + D VLN + L +LT
Sbjct: 181 PEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAADFLVLNFNQDLAKDLTSKTEATV 240
Query: 269 VFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLXXXXXXXXXXXTL 328
V F D A + +G Q+ E M I PG H L
Sbjct: 241 VPFSTLEKVD----GAYLEDG----QLYFRGEVVMAANEIGVPGSHNVENALATIAVAKL 292
Query: 329 FGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGK 388
V + +LS F V+ R + + G+K ND+ + N ++T+ A+ N K
Sbjct: 293 RDVDNQTIKETLSAFGGVKHRLQFVDDIKGVKFYNDSKSTNILATQKALSGFD----NSK 348
Query: 389 RVVILGDM 396
V+I G +
Sbjct: 349 VVLIAGGL 356
>TIGR_CMR|CPS_4464 [details] [associations]
symbol:CPS_4464 "UDP-N-acetylmuramate--alanine ligase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008763
"UDP-N-acetylmuramate-L-alanine ligase activity" evidence=ISS]
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
HAMAP:MF_00046 InterPro:IPR000713 InterPro:IPR004101
InterPro:IPR005758 InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875
Pfam:PF08245 UniPathway:UPA00219 InterPro:IPR016040 GO:GO:0005524
GO:GO:0005737 GO:GO:0051301 GO:GO:0008360 Gene3D:3.40.50.720
GO:GO:0007049 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 eggNOG:COG0773 KO:K01924 GO:GO:0008763
PANTHER:PTHR23135:SF5 TIGRFAMs:TIGR01082 HOGENOM:HOG000256031
OMA:YQPHRYS RefSeq:YP_271112.1 ProteinModelPortal:Q47VR0 SMR:Q47VR0
STRING:Q47VR0 GeneID:3522903 KEGG:cps:CPS_4464 PATRIC:21471761
BioCyc:CPSY167879:GI48-4473-MONOMER Uniprot:Q47VR0
Length = 503
Score = 119 (46.9 bits), Expect = 0.00046, P = 0.00046
Identities = 52/221 (23%), Positives = 94/221 (42%)
Query: 208 RPEIRVVLNVGDSHLESL-GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGV 266
+P + V+ N+ H+E+ G E + E + V+ D+P+V L +PR
Sbjct: 195 QPMVSVITNIDADHMETYQGDFEKLKDTYIEFLHNLPFYGLAVVCIDNPVVREL-LPRIS 253
Query: 267 RKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLXXXXXXXXXX 325
R+V +G+ + DVR V Q NG + V + +E ++ + PG H
Sbjct: 254 RQVITYGFSKDADVRAVNYQ-QNGAVSHFTVEVEGQEPLEMSVNLPGQHNVLNALAGVAV 312
Query: 326 XTLFGVSLAQVGISLSNFSPVQMRSELLVSRS---GIKIVNDAYNANPISTRAAIDLLKD 382
GV+ + +L+ F + R E L S G ++ D Y +P +A I ++
Sbjct: 313 AKDEGVNDEAICKALTEFEGIGRRFEKLTDFSTAAGDMVLVDDYGHHPSEVKATILAMRQ 372
Query: 383 IACNGKRVVILGDMLELGSTERESHEKILSYCCDA-CIDLI 422
KR+V++ T R+ +E + + C+ L+
Sbjct: 373 -GWPDKRLVMVFQPHRYSRT-RDLYEDFVEVLSEVDCLFLL 411
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.138 0.420 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 440 411 0.00080 118 3 11 22 0.37 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 615 (65 KB)
Total size of DFA: 269 KB (2141 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 28.17u 0.10s 28.27t Elapsed: 00:00:01
Total cpu time: 28.17u 0.10s 28.27t Elapsed: 00:00:01
Start: Sat May 11 06:03:32 2013 End: Sat May 11 06:03:33 2013