BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013589
(440 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P96613|MURF_BACSU UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
OS=Bacillus subtilis (strain 168) GN=murF PE=3 SV=1
Length = 457
Score = 191 bits (486), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 140/400 (35%), Positives = 206/400 (51%), Gaps = 32/400 (8%)
Query: 28 TINEIAESVNGKIL--KWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ IAE V G + ++ I + TDTR L ++Q F + G+ FD H F+ + +
Sbjct: 5 TVKNIAEMVKGTLANPQYEQTVIHGVATDTRKL--EQHQLFIPLKGERFDGHSFVE-QAF 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
G V+ WD+ N V +TL +L +A A ++GVTG
Sbjct: 62 EAGVAAVL-------WDRSVPNPPENHAVILVDDTLTALQQLAK-AYLQELGTRVIGVTG 113
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK MI L + V ++ GN+NN +G+ L+++ + +IAVLEMGMS KGE
Sbjct: 114 SNGKTTTKDMIHAVLGT-QYRVHKTGGNFNNHIGLPLTVLAMPENTEIAVLEMGMSAKGE 172
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+R+A P+ V+ N+G+SH++ LGS E +A AK EI K V + D+PL+ N
Sbjct: 173 IDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQN 232
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
+ +G D +L V+ G ++ F IP G H +NA
Sbjct: 233 ---AYSCQTKTYGTGTHNDYQL--QDVSQSEEGTHFTIKGIENT--FFIPILGKHNVMNA 285
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA A FG++ LS MR EL+ + SG+ I+NDAYNA+P S +AAI L
Sbjct: 286 MAAIAAGAYFGIAPEDAAKGLSGLKVTGMRLELIKTDSGLSIINDAYNASPTSMKAAIQL 345
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACI 419
+ + GK++++LGDMLELG E H++ C A I
Sbjct: 346 TESLEGYGKKMLVLGDMLELGDLEETFHKE-----CGAVI 380
>sp|Q9AKP1|MURF_RICMO Probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
OS=Rickettsia montana GN=murF PE=3 SV=1
Length = 449
Score = 167 bits (422), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 189/376 (50%), Gaps = 26/376 (6%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K F A+ G D H+++ + +I QV N + V+ + +L
Sbjct: 34 KGDLFIALQGNR-DGHDYVLDAIDKGAAAVIISKQVEINDKDKIILVD-----DCFEALQ 87
Query: 120 NMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI 179
MA Y R + + +V +TGSVGK++TK + + L+ + VF S GN+NN++G+ ++L
Sbjct: 88 KMALYKRENSKAKFIV-ITGSVGKTSTKEALKVLLQHDFL-VFASRGNFNNKLGMLINLA 145
Query: 180 GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIF 239
+ + A+ E+GM+ KGEI EL ++ +P I ++ N+ ++HLE SLE++A AK EIF
Sbjct: 146 SMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIAEAKCEIF 205
Query: 240 QESKLGDVCVLNADD-------PLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLG 292
D+ V+NAD ++ NL++ FG L+ + LG
Sbjct: 206 ANFSKNDIAVINADTNCYNKILSILKNLSITDIHS---FGRSSKTSAELILYE----NLG 258
Query: 293 VQVVLEKE--REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRS 350
QV L+ + +++ IP H N + + G + L+N SP + R
Sbjct: 259 EQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLIIDILGKDIEIAANHLANISPTKGRG 318
Query: 351 ELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKI 410
E +++ +++ D YNA+P S +AA++ LK + K +I GDMLELG + HEK+
Sbjct: 319 E-IINIQNCRVICDYYNASPQSMKAALEYLKQVPAENKTAII-GDMLELGENSKRLHEKL 376
Query: 411 LSYCCDACIDLIGLVG 426
+ Y DA + LVG
Sbjct: 377 VQYILDAACSKVYLVG 392
>sp|Q92H60|MURF_RICCN Probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7)
GN=murF PE=3 SV=1
Length = 449
Score = 166 bits (420), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 190/377 (50%), Gaps = 28/377 (7%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K F A+ G D H+++ + +I +V N + V+ + +L
Sbjct: 34 KGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKDKIILVD-----DCFEALQ 87
Query: 120 NMACYAR-NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
MA Y R NS+ + +TGSVGK++TK + + L+ + VF S GN+NN++G+ ++L
Sbjct: 88 KMALYKRENSK--AKFIAITGSVGKTSTKEALKVLLQHDFL-VFASRGNFNNKLGMLINL 144
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ + A+ E+GM+ KGEI EL ++ +P I ++ N+ ++HLE SLE++A AK EI
Sbjct: 145 ASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIAEAKCEI 204
Query: 239 FQESKLGDVCVLNADD-------PLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
F D+ V+NAD ++ NL++ FG L+ + L
Sbjct: 205 FANFSKNDIAVINADTNCYNKILSILKNLSITDIHS---FGRSAKTSAELILYE----NL 257
Query: 292 GVQVVLEKE--REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMR 349
G QV L+ + ++++ IP H N + + G + L+N SP + R
Sbjct: 258 GEQVYLKYKINKKVLDVTIPFIPRHFTENYTGVLLIIDILGKDIEIAANHLANISPTKGR 317
Query: 350 SELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEK 409
E +++ +++ D YNA+P S +AA++ LK + K +I GDMLELG + HEK
Sbjct: 318 GE-IINIQNCRVICDYYNASPQSMKAALEYLKQVPAENKTAII-GDMLELGENSKRLHEK 375
Query: 410 ILSYCCDACIDLIGLVG 426
++ Y DA + LVG
Sbjct: 376 LVQYILDAACSKVYLVG 392
>sp|O33804|MURF_STRTO Probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
OS=Streptomyces toyocaensis GN=murF PE=3 SV=2
Length = 446
Score = 161 bits (408), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 145/388 (37%), Positives = 203/388 (52%), Gaps = 29/388 (7%)
Query: 29 INEIAESVNGKI----LKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ EIAE V GK + P ++ D+R P F A G+H D H++ E G
Sbjct: 6 LGEIAEIVGGKATGESVTVTAPAVL--DSRQAEPGG--LFVAFAGEHADGHDYA--ERAG 59
Query: 85 K-GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGV-LVGVTGSVG 142
+ G V V+G++ + V VE +V T +L +A + G+ +VGVTGS G
Sbjct: 60 RAGAVAVLGSRPTSLP---TVVVE---DVRT--ALQTLAAHVVARLRDGLTVVGVTGSQG 111
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+ TK ++A L G V + G+ NN +GV L+++ A VLEMG +G+I E
Sbjct: 112 KTGTKDLLAAVLSGAGPTV-ATTGSLNNELGVPLTMLRAQAATRFLVLEMGARHEGDIAE 170
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
L + P+I VVLNVG +HL GS +ARAKGE+ Q G VLNADDP VA+++V
Sbjct: 171 LTGLVAPDIAVVLNVGVAHLGEFGSRAAIARAKGELVQGLVPGGTAVLNADDPRVASMSV 230
Query: 263 PRGVRKVFFGWRRGCDVRLVAAQVANGGLG-VQVVLEKEREMVKFVIPSPGLHLAINACA 321
+ FG DV+++ V LG L + +P G H A+NA A
Sbjct: 231 LTDGPVLTFGRTDPADVQVL--DVVLDRLGRPSCTLRTVDTSARLALPLVGAHQALNASA 288
Query: 322 AAAVATLFGV--SLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AAA A GV LA ++ ++ SP +M EL G ++ND+YNANP STRAA+D
Sbjct: 289 AAAAALAAGVPLDLATTALTTASLSPWRM--ELRDLACGATLLNDSYNANPDSTRAALDA 346
Query: 380 LKDIACNGKRVVILGDMLELGSTERESH 407
L I G+R+ +LG+MLELG H
Sbjct: 347 LSAIE-GGRRIAVLGEMLELGDGSEAEH 373
>sp|O05953|MURF_RICPR Probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
OS=Rickettsia prowazekii (strain Madrid E) GN=murF PE=3
SV=2
Length = 449
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 110/377 (29%), Positives = 193/377 (51%), Gaps = 28/377 (7%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K F A+ G D H++I + KG VI ++ DK + + N + +L
Sbjct: 34 KGDLFIALQGNR-DGHDYIQDAI-DKGATAVIVSKQVEINDKDKIILVNN----SFEALQ 87
Query: 120 NMACYAR-NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
MA Y R NS+ + +TGSVGK++TK + + L+ + VF S GN+NN +G+ ++L
Sbjct: 88 KMALYKRENSK--AKFIAITGSVGKTSTKEALKILLQHDFI-VFASRGNFNNYLGLLINL 144
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ + A+ E+GM+ +GEI EL ++ +P I ++ N+ ++HLE SLE++A AK EI
Sbjct: 145 ASMADDTEYAIFELGMNHQGEISELVQILKPNIAMINNISEAHLEFFHSLEEIAEAKCEI 204
Query: 239 FQESKLGDVCVLNADD-------PLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
F+ D+ ++NA + ++ NL++ FG +L+ + L
Sbjct: 205 FKNFSKNDIAIINASNNCYNKILSILKNLSITNIYS---FGHSSKASAKLILYKT----L 257
Query: 292 GVQVVLEK--EREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMR 349
G QV L+ + + IP H A N + + G + L++ + + R
Sbjct: 258 GEQVHLQYYINNKFIDITIPFIPRHFANNYTGVLLIIDILGKDIEISAKYLADIALTKGR 317
Query: 350 SELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEK 409
+++ ++ +++ D YNA+P S +AA++ LK + + K +I G+MLELG + HE+
Sbjct: 318 GKIINIQNS-RVICDYYNASPQSMKAALEYLKQVPADNKTSII-GEMLELGWNSQRLHEE 375
Query: 410 ILSYCCDACIDLIGLVG 426
++ Y DA + LVG
Sbjct: 376 LVPYILDAGCTKVYLVG 392
>sp|Q89AQ1|MURF_BUCBP UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
OS=Buchnera aphidicola subsp. Baizongia pistaciae
(strain Bp) GN=murF PE=3 SV=1
Length = 460
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 107/382 (28%), Positives = 191/382 (50%), Gaps = 20/382 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVC---NNWDKGFVQ 105
I TDTR + P F A+ G++FDAH F++ E KG ++ + C N + VQ
Sbjct: 33 ITTDTRKITPK--CLFIALIGKNFDAHMFVN-EAISKGAAALLLEKQCYPKNVIPQIIVQ 89
Query: 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
NT +L +A + R+ + + ++ +TGS GK++ K M + L++ G N ++
Sbjct: 90 -------NTTIALGKIASWIRD-QTNATVIAITGSSGKTSVKEMTSSILKNCG-NTISTF 140
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
N NN +GV L+L+ ++++ A+LE+G + +I ++ +P I ++ N+ SHL
Sbjct: 141 QNLNNNIGVPLTLLNLNKSHKYAILELGANYPKDIEYTTKITKPNIALINNIYHSHLAGF 200
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVF-FGWRRGCDVRLVAA 284
SL VA+AK EIF + + + N D + +K+ F ++ + A+
Sbjct: 201 KSLFGVAQAKQEIFLGLRKNGIAIYNKDSNYWSKWKKNLLTQKIINFSIKKNSTI--FAS 258
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
+ G + + + +P G H NA AAA +A + L + I LS+
Sbjct: 259 NITTSNQGSKFKIHSPNGEIYVTLPLLGYHNISNALAAATIAISINIPLEIIKIGLSSLP 318
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
++ R +++ I+ND YNAN S AI +L++I+ G ++ + GDMLELG +
Sbjct: 319 ILKNRLQIIRLNKYKTIINDTYNANTASMIVAIKILENIS--GYKLFVAGDMLELGKNDV 376
Query: 405 ESHEKILSYCCDACIDLIGLVG 426
H+ I + ++ I+ + +G
Sbjct: 377 LYHKIIGNTIYNSNINEVFSIG 398
>sp|P45450|MURF_SYNY3 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=murF
PE=3 SV=1
Length = 454
Score = 141 bits (356), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 114/364 (31%), Positives = 178/364 (48%), Gaps = 25/364 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQ--V 106
ICTDTR L F A+ G+ FD H FI P+ G + V+ ++ + Q V
Sbjct: 33 ICTDTRSLV--SGDLFLALRGESFDGHSFI-PQALTAGAIAVVTDRPVEGLGETVAQFLV 89
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
E +TL + ++A R RF+ ++GVTGSVGK+TTK +IA L G NV ++
Sbjct: 90 E-----DTLVAYQHIAAGWRQ-RFTIPIIGVTGSVGKTTTKELIAAVLSQFG-NVHKTRA 142
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +GV +L+ + D A++EM M G+G+I LA +A+P I ++ NVG +H+ LG
Sbjct: 143 NYNNEIGVPKTLLELSPDHDFAIVEMAMRGRGQIALLADIAKPTIGLITNVGTAHIGLLG 202
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV 286
S +A AK E+ +LN D+ L+ K G DV
Sbjct: 203 SELAIAEAKCELLAHQPPESTAILNRDNALLMETAQRFWQGKTITYGLEGGDVHGTVD-- 260
Query: 287 ANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
G ++L+ V +P G+H A N AA A+A G+ Q+ L+ P
Sbjct: 261 -----GENLILDG----VSLPLPLAGVHNASNYLAAIALAQCLGLDWQQLQSGLTVELP- 310
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES 406
+ R+ + ++++ YN S A++DLL + +R+ +LG M ELG
Sbjct: 311 KGRARRYQWGQDVVLLDETYNDGLESMLASLDLLANTPGK-RRLAVLGAMKELGDYGPTF 369
Query: 407 HEKI 410
H+++
Sbjct: 370 HQRV 373
>sp|P11880|MURF_ECOLI UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
OS=Escherichia coli (strain K12) GN=murF PE=1 SV=2
Length = 452
Score = 139 bits (350), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 117/380 (30%), Positives = 184/380 (48%), Gaps = 13/380 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR L P F A+ G+ FDAH+F G ++ + + + V+
Sbjct: 27 VTTDTRKLTPGC--LFVALKGERFDAHDFADQAKAGGAGALLVSRPLDIDLPQLIVK--- 81
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+T + +A + R + +V +TGS GK++ K M A L G N + GN
Sbjct: 82 ----DTRLAFGELAAWVRQ-QVPARVVALTGSSGKTSVKEMTAAILSQCG-NTLYTAGNL 135
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV ++L+ + D AV+E+G + +GEI + RPE +V N+ +HLE GSL
Sbjct: 136 NNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSL 195
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
VA+AKGEIF + ++NAD+ N G RKV+ + A +
Sbjct: 196 AGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHV 255
Query: 289 GGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQM 348
G + L+ V ++P PG H NA AAAA++ G +L + L+N V
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315
Query: 349 RSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHE 408
R + +++D+YNAN S AA+ +L ++ G RV+++GDM ELG+ H
Sbjct: 316 RLFPIQLAENQLLLDDSYNANVGSMTAAVQVLAEMP--GYRVLVVGDMAELGAESEACHV 373
Query: 409 KILSYCCDACIDLIGLVGDR 428
++ A ID + VG +
Sbjct: 374 QVGEAAKAAGIDRVLSVGKQ 393
>sp|O83401|MURF_TREPA UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
OS=Treponema pallidum (strain Nichols) GN=murF PE=3 SV=1
Length = 459
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 117/400 (29%), Positives = 189/400 (47%), Gaps = 33/400 (8%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQV----------CNN 98
+ D+R + P F + G H D H F+ E KG V + +Q C
Sbjct: 29 VSFDSRAVVPR--DLFIPLRGAHVDGHTFVE-EALQKGAVATLIDQRYPHAGEYVAWCTR 85
Query: 99 WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLG 158
+ + V +TL +L ++A + + + +G+TGS GK+T K M A A+ S
Sbjct: 86 FGAACIAVH-----DTLRALQDLASFYCKKFPALIRIGITGSSGKTTVKEM-ARAVFSER 139
Query: 159 VNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVG 218
V + GN N+ +G+ SL + ++ + E+GM+ +GE+ LA++ P ++ NVG
Sbjct: 140 YRVVATPGNLNSEIGLPQSLFFVRAEHEVGIFELGMNRRGEMRTLAQILVPHYAIITNVG 199
Query: 219 DSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCD 278
+H+ LG+ + +A K EIF + V + D V +P G V+ RG
Sbjct: 200 CAHVGILGTQQAIAEEKKEIFSQFTEHSVGFVPDDAYRVFLSNIPYGRVVVYDQGGRG-- 257
Query: 279 VRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGI 338
+A +V + GL VL + R + +P PG+H A NA A A+A G+ ++
Sbjct: 258 ---LATEVIDEGLRGSRVLYQGRWI---RVPLPGVHNAKNALAVIALAAQVGLPAEEIQR 311
Query: 339 SLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLE 398
+ P RS ++ + + + D YNANP S AA+ L I+ K V +LGDM E
Sbjct: 312 GMERVKPPFGRSHVVC--ASLTFLLDCYNANPDSMAAALHLCAHISAVSK-VYVLGDMGE 368
Query: 399 LGSTERESHEK--ILSYCCDA-CIDLIGLVGDRVVVQCKW 435
LG T E+H + +L+ DA + + G R V + W
Sbjct: 369 LGVTAAEAHYRVCVLAAASDARAVYVFGPEFCRAVRKVSW 408
>sp|P45061|MURF_HAEIN UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd) GN=murF PE=3 SV=1
Length = 457
Score = 133 bits (334), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 111/387 (28%), Positives = 187/387 (48%), Gaps = 20/387 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR N FFA+ G+ FDAH+++ + +G + ++ Q ++ + V+
Sbjct: 28 INTDTR--KSVSNSLFFALKGEKFDAHQYLD-QAVSQGALALVVQQENSSISVPQLVVK- 83
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVN---VFQSY 165
+T +L +A + R + + V +TGS GK+T K M A L+ + V +
Sbjct: 84 ----DTRIALGELAKWLR-EKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVLFTN 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +GV L+L+ + AV+E+G + + EI ++ +P ++ N+ +HLE
Sbjct: 139 GNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEINYTTKLVQPNAALINNIAPAHLEGF 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV-PRGVRKVFFGWRRGCDVRLVAA 284
GSL V +AKGEI++ V ++NA+ +L + + + + G D A
Sbjct: 199 GSLAGVVQAKGEIYRGLTKNGVAIINAEHN---HLDIWQKEISNHAIQYFNGKDYS--AK 253
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
+ + G L + ++ +P G H NA AA A+A G +L V L S
Sbjct: 254 NIHHTSQGSTFTLISPQGEIEITLPYLGEHNVKNALAATALAMNVGATLTDVKAGLEQRS 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
V+ R + + +++D YNAN S AAID+LK + R++ +GDM ELG
Sbjct: 314 QVKGRLFPIQVTPNLLLLDDTYNANKDSLCAAIDVLK--GYDAFRILCVGDMKELGENSL 371
Query: 405 ESHEKILSYCCDACIDLIGLVGDRVVV 431
H ++ Y +DL+ G+ V
Sbjct: 372 AIHREVGQYINLVNLDLVCSYGNESAV 398
>sp|P0A5L4|MURF_MYCTU UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
OS=Mycobacterium tuberculosis GN=murF PE=3 SV=1
Length = 510
Score = 132 bits (332), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 123/411 (29%), Positives = 184/411 (44%), Gaps = 33/411 (8%)
Query: 28 TINEIAESVNGKILKWGP--------PGIICTDTRILAPNKNQWFFAITGQHFDAHEFIS 79
T+ +IAE V G + P G + D+R + P F A+ G D H+ +
Sbjct: 5 TVAQIAEIVGGAVADISPQDAAHRRVTGTVEFDSRAIGPGG--LFLALPGARADGHDHAA 62
Query: 80 PELYGKGC-------VGV----IGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNS 128
+ VGV + N G ++ + +G+ + + + A +
Sbjct: 63 SAVAAGAAVVLAARPVGVPAIVVPPVAAPNVLAGVLEHDNDGSGAAVLAALAKLATAVAA 122
Query: 129 RFSG---VLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAV 185
+ ++G+TGS GK++TK ++A L LG V G++NN +G +++ R
Sbjct: 123 QLVAGGLTIIGITGSSGKTSTKDLMAAVLAPLG-EVVAPPGSFNNELGHPWTVLRATRRT 181
Query: 186 DIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLG 245
D +LEM G I LA +A P I VVLNVG +HL GS E +A+ K E+ Q
Sbjct: 182 DYLILEMAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHS 241
Query: 246 DVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLG-VQVVLEKEREMV 304
VLNADDP VA + R V DV A V+ L + L
Sbjct: 242 GAVVLNADDPAVAAMAKLTAARVVRVSRDNTGDVW--AGPVSLDELARPRFTLHAHDAQA 299
Query: 305 KFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV-QMRSELLVSRSGIKIVN 363
+ + G H NA AAAVA G S+ QV +L+ PV + R ++ G+ +++
Sbjct: 300 EVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVSRHRMQVTTRGDGVTVID 359
Query: 364 DAYNANPISTRAAIDLLKDIACNGKRV----VILGDMLELGSTERESHEKI 410
DAYNANP S RA + L IA + +LG+M ELG H++I
Sbjct: 360 DAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRI 410
>sp|P0A5L5|MURF_MYCBO UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
GN=murF PE=3 SV=1
Length = 510
Score = 132 bits (332), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 123/411 (29%), Positives = 184/411 (44%), Gaps = 33/411 (8%)
Query: 28 TINEIAESVNGKILKWGP--------PGIICTDTRILAPNKNQWFFAITGQHFDAHEFIS 79
T+ +IAE V G + P G + D+R + P F A+ G D H+ +
Sbjct: 5 TVAQIAEIVGGAVADISPQDAAHRRVTGTVEFDSRAIGPGG--LFLALPGARADGHDHAA 62
Query: 80 PELYGKGC-------VGV----IGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNS 128
+ VGV + N G ++ + +G+ + + + A +
Sbjct: 63 SAVAAGAAVVLAARPVGVPAIVVPPVAAPNVLAGVLEHDNDGSGAAVLAALAKLATAVAA 122
Query: 129 RFSG---VLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAV 185
+ ++G+TGS GK++TK ++A L LG V G++NN +G +++ R
Sbjct: 123 QLVAGGLTIIGITGSSGKTSTKDLMAAVLAPLG-EVVAPPGSFNNELGHPWTVLRATRRT 181
Query: 186 DIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLG 245
D +LEM G I LA +A P I VVLNVG +HL GS E +A+ K E+ Q
Sbjct: 182 DYLILEMAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHS 241
Query: 246 DVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLG-VQVVLEKEREMV 304
VLNADDP VA + R V DV A V+ L + L
Sbjct: 242 GAVVLNADDPAVAAMAKLTAARVVRVSRDNTGDVW--AGPVSLDELARPRFTLHAHDAQA 299
Query: 305 KFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV-QMRSELLVSRSGIKIVN 363
+ + G H NA AAAVA G S+ QV +L+ PV + R ++ G+ +++
Sbjct: 300 EVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVSRHRMQVTTRGDGVTVID 359
Query: 364 DAYNANPISTRAAIDLLKDIACNGKRV----VILGDMLELGSTERESHEKI 410
DAYNANP S RA + L IA + +LG+M ELG H++I
Sbjct: 360 DAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRI 410
>sp|P57315|MURF_BUCAI UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=murF PE=3 SV=1
Length = 455
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/380 (26%), Positives = 175/380 (46%), Gaps = 14/380 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I DT+ + P F A+ G+ FDAH FI L K V + + ++ VE
Sbjct: 27 IVIDTKKIIPG--CLFIALIGRKFDAHIFIHDALKKKCAAFVTQKNIKPHVP--YIIVE- 81
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
NT +L +A + R + +L +TGS GK++ K M A L G N + N
Sbjct: 82 ----NTSIALGQIAGWVRKKTKAKIL-AITGSCGKTSVKEMTASILRKNG-NTISTIDNL 135
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV ++L+ + + V+E+G S GEI + +++P+I ++ N+ +HL+ SL
Sbjct: 136 NNNIGVPMTLLQLKQEHKYGVIELGASKPGEIAYTSNISQPDIILINNIHCAHLQGFKSL 195
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP-RGVRKVFFGWRRGCDVRLVAAQVA 287
V++AK EIF K ++N D + + +FF ++ + +
Sbjct: 196 LGVSKAKSEIFSGLKPNSTVIINLDSHHFSQWKKDIKNSNILFFSIKKKKYSNFFCSNIK 255
Query: 288 NGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQ 347
G + + +P G NA AA+A + + L ++ I L + V
Sbjct: 256 IHIHGTSFTMHTPCGKINISLPFLGYQNISNALAASAFSFALKIPLKKIKIGLLDTPIVS 315
Query: 348 MRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESH 407
R E ++ +++D YN+N S +AI +L+ + G ++++ GDM ELG H
Sbjct: 316 KRLESIILEPNKILIDDTYNSNVSSMISAIKVLERMP--GYKILVTGDMAELGENSMMYH 373
Query: 408 EKILSYCCDACIDLIGLVGD 427
+ I + + I+ I +GD
Sbjct: 374 QMIGNTANSSAINKIFSIGD 393
>sp|O69556|MURF_MYCLE UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
OS=Mycobacterium leprae (strain TN) GN=murF PE=3 SV=1
Length = 517
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 100/305 (32%), Positives = 145/305 (47%), Gaps = 34/305 (11%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
++G+TGS GK++TK ++A+ LE LG V ++NN +G +++ R+ D +LEM
Sbjct: 133 IIGITGSSGKTSTKDLVAVVLELLG-EVVAPPESFNNELGHPWTVLRATRSTDYLILEMS 191
Query: 194 MSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
G I LA +A P+I VVLNVG +HL GS E +AR K E+ Q V +LN D
Sbjct: 192 ARRPGNIAALAAIAPPKIGVVLNVGTAHLGEFGSREAIARTKTELPQAIMQSGVVILNVD 251
Query: 254 DPLVANL---TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPS 310
DP VA + TV R +R RG + + G + E R
Sbjct: 252 DPAVAAMADATVARVIR-----VSRGSYSHPGSPNSPDVWTGPVSLDELARPRFTLHTRD 306
Query: 311 P------------GLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV-QMRSELLVSRS 357
P G H NA AAAV G S+ +V ++L+ PV + R ++
Sbjct: 307 PRAGATEIQLGVYGDHQVANALCAAAVGLECGASVEEVAVALAATGPVSRHRMQVTTRAD 366
Query: 358 GIKIVNDAYNANPISTRAAIDLLKDIA------------CNGKRVVILGDMLELGSTERE 405
G+ +++D YNANP S RA + L IA C + +LG+M ELG
Sbjct: 367 GVTVIDDTYNANPDSMRAGLQALAWIAHGGTHDKNQPGSCARRSWAVLGEMAELGEDSIT 426
Query: 406 SHEKI 410
H++I
Sbjct: 427 EHDRI 431
>sp|Q44777|MURF_BORBU UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP
102532 / DSM 4680) GN=murF PE=3 SV=2
Length = 464
Score = 112 bits (279), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 154/303 (50%), Gaps = 20/303 (6%)
Query: 135 VGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGM 194
+ +TGS GK+TTK M+ L S ++++GN N+ +G+ LS++ ++ + AV E+G+
Sbjct: 121 IAITGSNGKTTTKEMLYSIL-SKKYKTYKTWGNLNSDIGLPLSILRVEGNEEYAVFEVGV 179
Query: 195 SGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKG-------EIFQESKLGDV 247
S GE+ L+++ +PEI ++ N+ +H+++ L+ +A K EIF +++ D
Sbjct: 180 SYVGEMDLLSQILKPEIVIITNISYAHMQAFKELQAIAFEKSKIIGKNIEIFVVNEMNDY 239
Query: 248 CVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFV 307
CV +AN P V+ V+F + ++ + + +G V + ++
Sbjct: 240 CVYLEKRAKIAN---P-NVKIVYFDFE---NLSIKSFSFLDGKFSFDFVYKG----FEYS 288
Query: 308 IPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYN 367
I G H NA +A G+ ++ L + + R+E+L +++G I+ND+YN
Sbjct: 289 ILLLGRHNIFNAIGCINLALFLGMREKEIKEGLIETAFQKGRAEIL-TKNGYLILNDSYN 347
Query: 368 ANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
N S A +++ D+ K+ ++LG ELG ++H+ ++ D I L+G+
Sbjct: 348 GNMGSFMALKNMILDLNIQNKKFIVLGSFKELGELAYKTHKDLIQEAISMNFDKIFLIGE 407
Query: 428 RVV 430
+
Sbjct: 408 EFL 410
>sp|B4U1U3|MURD_STREM UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
equi subsp. zooepidemicus (strain MGCS10565) GN=murD
PE=3 SV=1
Length = 452
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 131/269 (48%), Gaps = 23/269 (8%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIG-IDRAVDIAVLEM 192
++G+TGS GK+TT +MIA L + + + GN +G S + A DI V+E+
Sbjct: 114 IIGITGSNGKTTTTTMIADVLNAGNQSALLA-GN----IGFPASEVAQAATAKDILVMEL 168
Query: 193 GMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNA 252
++L + +P I V+ N+ +HL+ GS ED AK I D VLNA
Sbjct: 169 S---SFQLLGTEQF-QPHIAVITNLVPTHLDYHGSFEDYIAAKWRIQHRMTDKDYLVLNA 224
Query: 253 DDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPG 312
D LV +L VFF + D A +A+G L ++E+ M + PG
Sbjct: 225 DQELVKSLAQKTKASPVFFSTKEKVD----GAYLADGYL----YFKEEQVMSAAELGLPG 276
Query: 313 LHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPIS 372
H NA A AVA L G+S + +LS+FS V+ R +L+ + + + ND+ + N ++
Sbjct: 277 RHNIENALATIAVAKLRGISNQVISKTLSHFSGVKHRLQLVGTLNQVTFYNDSKSTNILA 336
Query: 373 TRAAIDLLKDIACNGKRVVILGDMLELGS 401
+ A+ + RV+++ L+ G+
Sbjct: 337 CQKALS-----GFDNSRVILIAGGLDRGN 360
>sp|Q8R9G4|MURD_THETN UDP-N-acetylmuramoylalanine--D-glutamate ligase
OS=Thermoanaerobacter tengcongensis (strain DSM 15242 /
JCM 11007 / NBRC 100824 / MB4) GN=murD PE=3 SV=1
Length = 450
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 90/182 (49%), Gaps = 9/182 (4%)
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LE + RP+I ++N+ HL+ + E+ A KG IF+ + + VLN DDP+ L
Sbjct: 169 LETVKEFRPKISCIINITPDHLDRHKTFENYANIKGRIFENQREEEYVVLNYDDPVTWGL 228
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFV-IPSPGLHLAINA 319
R KVF R+ V A V G L +Q ++++K I PG H NA
Sbjct: 229 K-ERAKAKVFPFSRK--KVLENGAYVKEGFLYLQ-----NKKVIKVEDIYIPGEHNLENA 280
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA++VA L G+ + + +L F V+ R E + GIK ND+ NP ++ AI
Sbjct: 281 LAASSVAYLSGIEVDAIETTLRTFKGVEHRIEFVAEIEGIKFYNDSKGTNPDASIKAIQA 340
Query: 380 LK 381
LK
Sbjct: 341 LK 342
>sp|B4U609|MURD_HYDS0 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Hydrogenobaculum
sp. (strain Y04AAS1) GN=murD PE=3 SV=1
Length = 411
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 106/233 (45%), Gaps = 29/233 (12%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
++ VTG+ GKSTT +I F+ GN+ G S I +D + LE
Sbjct: 87 IIAVTGTDGKSTTVHLIH------HFTSFKEGGNF----GTPFSEIVLDNDKENVALEAS 136
Query: 194 MSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
S +G+ L+ RP + V LN HL+ SLED +K +IF+ D+ +LNA
Sbjct: 137 -SFQGKTLD---TFRPNVGVFLNFSKDHLDWHPSLEDYLLSKQKIFKNQTQEDILILNAQ 192
Query: 254 DPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPS-PG 312
P+ P +K+FFG D+++V G V + E + PS G
Sbjct: 193 KPVC---DTPSLAKKIFFG--ENGDLKVV---------GSDVYYKDELLIENISHPSLKG 238
Query: 313 LHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDA 365
LH N A+ VA G+SL ++ +L F + R + L + GI I ND+
Sbjct: 239 LHNLYNIAVASFVAFSMGISLEEIKKNLETFEALPFRYQYLGNFEGIDICNDS 291
>sp|B8ETM5|MURC_METSB UDP-N-acetylmuramate--L-alanine ligase OS=Methylocella silvestris
(strain BL2 / DSM 15510 / NCIMB 13906) GN=murC PE=3 SV=1
Length = 468
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 120/259 (46%), Gaps = 36/259 (13%)
Query: 135 VGVTGSVGKSTTKSMIALALESLGVN-------VFQSYGNWNNRVGVALSLIGIDRAVDI 187
V + G+ GK+TT S++A LE+ G + + +YG N+R+G A D
Sbjct: 110 VAIAGTHGKTTTTSLVATLLEAGGFDPTVINGGIINAYGT-NSRLG----------AGDW 158
Query: 188 AVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDV 247
V+E S G L+L ++ ++ N+ HL+ G+ E++ +A +
Sbjct: 159 MVVEADES-DGTFLKLP----ADVAIITNIDPEHLDHFGTFENIRKAFRSFVENIPFYGF 213
Query: 248 CVLNADDPLVANLTVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKERE---- 302
V+ D P V L R+V +G DVRLV +A G VV+ +
Sbjct: 214 AVMCLDHPTVQELVGQIEDRRVITYGENPHADVRLVDIDLAGGMSRFSVVVRDRKSGGET 273
Query: 303 -MVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGI-- 359
+ K ++P PGLH A+NA AA AVA G+S Q+ +L+ F V+ R +R+G
Sbjct: 274 VIEKILMPMPGLHNALNATAAIAVAHQLGMSPDQIRGALAGFGGVKRR----FTRTGEWN 329
Query: 360 -KIVNDAYNANPISTRAAI 377
IV D Y +P+ A +
Sbjct: 330 GAIVFDDYAHHPVEIAAVL 348
>sp|Q2RK78|MURC_MOOTA UDP-N-acetylmuramate--L-alanine ligase OS=Moorella thermoacetica
(strain ATCC 39073) GN=murC PE=3 SV=1
Length = 468
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 115/260 (44%), Gaps = 19/260 (7%)
Query: 135 VGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGV-ALSLIGIDRAVDIAVLEMG 193
+ V G+ GK+TT +++AL ++ G+ G + A G D V E
Sbjct: 111 IAVAGAHGKTTTSALVALVMKEGGLEPAAVIGGYVREFASNAYPGRG-----DFLVAEAD 165
Query: 194 MSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
S G L L +PEI ++ N+ HLE GSL+ + A + + + G +L A+
Sbjct: 166 ES-DGSFLWL----KPEIALITNIEADHLEHYGSLDRIVAAFKDFIDQIRPGGKAILCAE 220
Query: 254 DPLVANLTV--PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSP 311
DP VA L PR V + +G D R Q+A G G + +E+ + + + P
Sbjct: 221 DPRVAGLVACSPRQV--ITYGLNGRPDYRATGVQMAGMG-GRAAIYYREQYLGQLTMAVP 277
Query: 312 GLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPI 371
G H +NA A A G+ A + +L F V R E+L ++V+D Y +P
Sbjct: 278 GRHNILNALGAIAAGHQLGIPFAVMARALGQFRGVGRRFEILWDDGTTRVVDD-YAHHPT 336
Query: 372 STRAAIDLLKDIACNGKRVV 391
RA + + KRVV
Sbjct: 337 EIRATLAAASQVGA--KRVV 354
>sp|Q8E6P1|MURD_STRA3 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
agalactiae serotype III (strain NEM316) GN=murD PE=3
SV=1
Length = 451
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 109/244 (44%), Gaps = 16/244 (6%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
L+G+TGS GK+TT +MIA L + G G +G S + + A D +L M
Sbjct: 114 LIGITGSNGKTTTTTMIAEVLNAGG-----QRGLLAGNIGFPASEV-VQAADDKDILVME 167
Query: 194 MSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
+S L + RP I V+ N+ +HL+ GS ED AK I + D VLN +
Sbjct: 168 LSSFQ--LMGVKEFRPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSDFLVLNFN 225
Query: 254 DPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGL 313
+ L V F D V + Q+ + E M+ I PG
Sbjct: 226 QGISKELAKTTKATIVPFSTTEKVDGAYVQDK--------QLFYKGENIMLVDDIGVPGS 277
Query: 314 HLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPIST 373
H NA A AVA L G+S + +LSNF V+ R + L GI ND+ + N ++T
Sbjct: 278 HNVENALATIAVAKLAGISNQVIRETLSNFGGVKHRLQSLGKVHGISFYNDSKSTNILAT 337
Query: 374 RAAI 377
+ A+
Sbjct: 338 QKAL 341
>sp|Q9K9S8|MURD_BACHD UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Bacillus
halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344
/ JCM 9153 / C-125) GN=murD PE=3 SV=1
Length = 450
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 117/258 (45%), Gaps = 33/258 (12%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID-RAVDIAVLE- 191
+V +TGS GK+TT S++ L+ + GN +GV S + + A D+ V+E
Sbjct: 113 IVAITGSNGKTTTTSLVVEMLKG-SAREPKVAGN----IGVVASDVAREATADDVIVMEV 167
Query: 192 -----MGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGD 246
MG S RP++ ++LN+ D+HL+ GS E+ AK +I + K D
Sbjct: 168 SSFQLMGTS----------HFRPKVAILLNIFDAHLDYHGSKENYVAAKKKIVENMKEED 217
Query: 247 VCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL--GVQVVLEKEREMV 304
V NADDPLV+ + + F + V +G G + E+ +
Sbjct: 218 YFVYNADDPLVSKVAAETKATPIPFSR---------STVVKSGAYVDGETYMFRGEKIVE 268
Query: 305 KFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVND 364
K + PG H N AA + A L G + Q+ LS FS V+ R + + + K ND
Sbjct: 269 KGDVVLPGDHNVDNVLAAMSAALLMGATKEQIHHVLSTFSGVEHRLQFVGTAFERKWYND 328
Query: 365 AYNANPISTRAAIDLLKD 382
+ N +ST AAI D
Sbjct: 329 SKATNILSTTAAIQSFTD 346
>sp|Q8E186|MURD_STRA5 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
agalactiae serotype V (strain ATCC BAA-611 / 2603 V/R)
GN=murD PE=1 SV=1
Length = 451
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 107/244 (43%), Gaps = 16/244 (6%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
L+G+TGS GK+TT +MIA L + G G +G S + + A D L M
Sbjct: 114 LIGITGSNGKTTTTTMIAEVLNAGG-----QRGLLAGNIGFPASEV-VQAANDKDTLVME 167
Query: 194 MSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
+S L + RP I V+ N+ +HL+ GS ED AK I + D VLN +
Sbjct: 168 LSSFQ--LMGVKEFRPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSDFLVLNFN 225
Query: 254 DPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGL 313
+ L V F D V + Q+ + E M I PG
Sbjct: 226 QGISKELAKTTKATIVPFSTTEKVDGAYVQDK--------QLFYKGENIMSVDDIGVPGS 277
Query: 314 HLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPIST 373
H NA A AVA L G+S + +LSNF V+ R + L GI ND+ + N ++T
Sbjct: 278 HNVENALATIAVAKLAGISNQVIRETLSNFGGVKHRLQSLGKVHGISFYNDSKSTNILAT 337
Query: 374 RAAI 377
+ A+
Sbjct: 338 QKAL 341
>sp|Q3K2P4|MURD_STRA1 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
agalactiae serotype Ia (strain ATCC 27591 / A909 / CDC
SS700) GN=murD PE=3 SV=1
Length = 451
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 107/244 (43%), Gaps = 16/244 (6%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
L+G+TGS GK+TT +MIA L + G G +G S + + A D L M
Sbjct: 114 LIGITGSNGKTTTTTMIAEVLNAGG-----QRGLLAGNIGFPASEV-VQAANDKDTLVME 167
Query: 194 MSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
+S L + RP I V+ N+ +HL+ GS ED AK I + D VLN +
Sbjct: 168 LSSFQ--LMGVKEFRPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSDFLVLNFN 225
Query: 254 DPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGL 313
+ L V F D V + Q+ + E M I PG
Sbjct: 226 QGISKELAKTTKATIVPFSTTEKVDGAYVQDK--------QLFYKGENIMSVDDIGVPGS 277
Query: 314 HLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPIST 373
H NA A AVA L G+S + +LSNF V+ R + L GI ND+ + N ++T
Sbjct: 278 HNVENALATIAVAKLAGISNQVIRETLSNFGGVKHRLQSLGKVHGISFYNDSKSTNILAT 337
Query: 374 RAAI 377
+ A+
Sbjct: 338 QKAL 341
>sp|Q67QM7|MURD_SYMTH UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=murD PE=3 SV=1
Length = 455
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 109/254 (42%), Gaps = 24/254 (9%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
++GVTGS GK+TT ++I L + G + GN + + I + V VLE+
Sbjct: 112 VIGVTGSAGKTTTTTLIGEILRAAGRETYVG-GNIGKPLIEQVEAIPSEAVV---VLELS 167
Query: 194 MSGKGEILELARMAR-PEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNA 252
+L + R P I VV NV +HL+ ++E+ AK IF+ D VLNA
Sbjct: 168 S------FQLQLVHRSPHIAVVTNVSPNHLDVHATMEEYVEAKKAIFRRQSPADWLVLNA 221
Query: 253 DDPLVANLTVPRGVRKVFFGWRR---GCDVRLVAAQVA---NGGLGVQVVLEKEREMVKF 306
DDP V R V F R G D V GG ++ E
Sbjct: 222 DDPTVRAFAAEARSRVVLFSRRADPGGRDAAFVREDRVIWRRGGRETPILFLDE------ 275
Query: 307 VIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAY 366
I PGLH N AA A L G L+ V ++ F+ V+ R E + G+K ND+
Sbjct: 276 -IRLPGLHNQENVLAAVAACFLAGAPLSAVREVVTQFTGVEHRIEPVRVLDGVKWYNDSK 334
Query: 367 NANPISTRAAIDLL 380
+P AA+ L
Sbjct: 335 ATSPAEAVAALTTL 348
>sp|A5EPK1|MURC_BRASB UDP-N-acetylmuramate--L-alanine ligase OS=Bradyrhizobium sp.
(strain BTAi1 / ATCC BAA-1182) GN=murC PE=3 SV=1
Length = 467
Score = 75.9 bits (185), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 123/272 (45%), Gaps = 31/272 (11%)
Query: 135 VGVTGSVGKSTTKSMIALALESLGVN-------VFQSYGNWNNRVGVALSLIGIDRAVDI 187
V + G+ GK+TT SM+A L++ G++ + +YG N R+G A D
Sbjct: 110 VAIAGTHGKTTTTSMVAALLDAGGIDPTVINGGIINAYGT-NARLG----------AGDW 158
Query: 188 AVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDV 247
V+E S G L+L ++ +V NV HL+ + + V A +
Sbjct: 159 MVVEADES-DGTFLKLP----ADVAIVTNVDPEHLDHFKTFDAVQDAFRAFVENVPFYGF 213
Query: 248 CVLNADDPLVANLTVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKER----- 301
V+ D P+V L R++ +G DVRLV ANG +VV +
Sbjct: 214 AVMCIDHPVVQALVGKIEDRRIITYGVNPQADVRLVDLSPANGSSRFKVVFRDRKSGATH 273
Query: 302 EMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKI 361
E+ +P PG H A NA AA AVA G+S + +++ F V+ R +G+ I
Sbjct: 274 EISDITLPMPGRHNASNATAAIAVAHELGISDEAIRKAIAGFGGVKRRFTRTGEWNGVTI 333
Query: 362 VNDAYNANPISTRAAIDLLKDIACNGKRVVIL 393
++D Y +P+ A + ++ + +GK + ++
Sbjct: 334 IDD-YGHHPVEIAAVLKAARE-STSGKVIAVV 363
>sp|B0K8K5|MURD_THEP3 UDP-N-acetylmuramoylalanine--D-glutamate ligase
OS=Thermoanaerobacter pseudethanolicus (strain ATCC
33223 / 39E) GN=murD PE=3 SV=1
Length = 454
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 3/181 (1%)
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LE + +P+I ++N+ HL+ + E+ KG IF+ + + VLN DDP+ +L
Sbjct: 169 LETIKEFKPKISCIINITPDHLDRHKTFENYRDIKGRIFENQREDEYTVLNYDDPVTWSL 228
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINAC 320
R F + + A + +G + + V E+ + I PG H NA
Sbjct: 229 KNKAKCRVFPFSRKSLLEN---GAYIKDGSIYISVNGNAEKIIDIEEIYIPGEHNLENAL 285
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
AA++VA L G+S + +L F V+ R E + +G+K ND+ NP ++ AI L
Sbjct: 286 AASSVAYLSGISADVIANTLKTFKGVEHRIEFVDEINGVKFYNDSKGTNPDASIKAIQAL 345
Query: 381 K 381
K
Sbjct: 346 K 346
>sp|B0K3H2|MURD_THEPX UDP-N-acetylmuramoylalanine--D-glutamate ligase
OS=Thermoanaerobacter sp. (strain X514) GN=murD PE=3
SV=1
Length = 454
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 3/181 (1%)
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LE + +P+I ++N+ HL+ + E+ KG IF+ + + VLN DDP+ +L
Sbjct: 169 LETIKEFKPKISCIINITPDHLDRHKTFENYRDIKGRIFENQREDEYTVLNYDDPVTWSL 228
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINAC 320
R F + + A + +G + + V E+ + I PG H NA
Sbjct: 229 KNKAKCRVFPFSRKSLLEN---GAYIKDGSIYISVNGNAEKIIDIEEIYIPGEHNLENAL 285
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
AA++VA L G+S + +L F V+ R E + +G+K ND+ NP ++ AI L
Sbjct: 286 AASSVAYLSGISADVIANTLKTFKGVEHRIEFVDEINGVKFYNDSKGTNPDASIKAIQAL 345
Query: 381 K 381
K
Sbjct: 346 K 346
>sp|C1CJF2|MURD_STRZP UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
pneumoniae (strain P1031) GN=murD PE=3 SV=1
Length = 450
Score = 75.1 bits (183), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 114/262 (43%), Gaps = 22/262 (8%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIG-IDRAVDIAVLEM 192
++G+TGS GK+TT +MI L + G +G + +G S + I D V+E+
Sbjct: 114 IIGITGSNGKTTTTTMIGEVLTAAG-----QHGLLSGNIGYPASQVAQIASDKDTLVMEL 168
Query: 193 GMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNA 252
+ E PEI V+ N+ +H++ GS + AK I + D VLN
Sbjct: 169 SSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAADFLVLNF 224
Query: 253 DDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPG 312
+ L +LT V F D A + +G Q+ E M I PG
Sbjct: 225 NQDLAKDLTSKTEATVVPFSTLEKVD----GAYLEDG----QLYFRGEVVMAANEIGVPG 276
Query: 313 LHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPIS 372
H NA A AVA L GV + +LS F V+ R + + G+K ND+ + N ++
Sbjct: 277 SHNVENALATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVDDIKGVKFYNDSKSTNILA 336
Query: 373 TRAAIDLLKDIACNGKRVVILG 394
T+ A+ N K V+I G
Sbjct: 337 TQKALSGFD----NSKVVLIAG 354
>sp|C1C648|MURD_STRP7 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
pneumoniae (strain 70585) GN=murD PE=3 SV=1
Length = 450
Score = 75.1 bits (183), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 114/262 (43%), Gaps = 22/262 (8%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIG-IDRAVDIAVLEM 192
++G+TGS GK+TT +MI L + G +G + +G S + I D V+E+
Sbjct: 114 IIGITGSNGKTTTTTMIGEVLTAAG-----QHGLLSGNIGYPASQVAQIASDKDTLVMEL 168
Query: 193 GMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNA 252
+ E PEI V+ N+ +H++ GS + AK I + D VLN
Sbjct: 169 SSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAADFLVLNF 224
Query: 253 DDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPG 312
+ L +LT V F D A + +G Q+ E M I PG
Sbjct: 225 NQDLAKDLTSKTEATVVPFSTLEKVD----GAYLEDG----QLYFRGEVVMAANEIGVPG 276
Query: 313 LHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPIS 372
H NA A AVA L GV + +LS F V+ R + + G+K ND+ + N ++
Sbjct: 277 SHNVENALATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVDDIKGVKFYNDSKSTNILA 336
Query: 373 TRAAIDLLKDIACNGKRVVILG 394
T+ A+ N K V+I G
Sbjct: 337 TQKALSGFD----NSKVVLIAG 354
>sp|Q3AAE4|MURD_CARHZ UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008) GN=murD PE=3
SV=1
Length = 451
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 84/181 (46%), Gaps = 9/181 (4%)
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LE + +P++ V+LN+ HL+ +LE AK IF DV VLN DDP + +L
Sbjct: 167 LETIKSFKPKVAVLLNLTPDHLDRHKTLEGYLEAKARIFINQDRTDVTVLNYDDPRIRSL 226
Query: 261 TVPRGVRKVFFGWRRGCD--VRLVAAQVANGGLGVQVVLEKEREMVKFV-IPSPGLHLAI 317
R +F + + V + ++ LGV E E++ +P PG H
Sbjct: 227 GRKTPGRVFYFSQKEELEEGVFVKKGKIVVRSLGV------EEEIIDIENLPLPGPHNLE 280
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
NA A A FGVS + L NF V R E + +G+ VND+ NP ST A+
Sbjct: 281 NALATVAACWSFGVSGKNIERGLRNFQGVAHRLEKVAEINGVLYVNDSKGTNPDSTIKAL 340
Query: 378 D 378
+
Sbjct: 341 N 341
>sp|A5D147|MURD_PELTS UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Pelotomaculum
thermopropionicum (strain DSM 13744 / JCM 10971 / SI)
GN=murD PE=3 SV=1
Length = 455
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 97/212 (45%), Gaps = 13/212 (6%)
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LE A RP++ VVLN+ HL+ G++ + A K +F GD VLN DDPL A+L
Sbjct: 171 LETASTFRPKVGVVLNITPDHLDRHGTMGNYAATKARMFANQGPGDFAVLNCDDPLAASL 230
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMV--KFVIPSPGLHLAIN 318
R +FF R+ L +GG+ + L RE+V + PG H N
Sbjct: 231 KAGVRSRVIFFSRRK----ELKEGVWVSGGM-IVASLNGHREVVCRSDELGLPGAHNLEN 285
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A AA A A G+ + +L F V R E + G++ +ND+ NP +
Sbjct: 286 ALAAVAAAKAMGIESNSLAGTLRRFKGVAHRLEFVAEVDGVRYINDSKGTNPDAA----- 340
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKI 410
+K + G+ +V++ GS RE K+
Sbjct: 341 -IKALESYGEPIVLIAGGKNKGSDFREFARKV 371
>sp|P45063|MURD_HAEIN UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=murD PE=3 SV=1
Length = 437
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 131/295 (44%), Gaps = 46/295 (15%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGV-ALSLIGIDRAVDIAVLEM 192
+VG+TGS GKST +++ ++ GV V +G+ ALSL+ D ++ VLE+
Sbjct: 107 IVGITGSNGKSTVTTLVYEMAKAAGVKV-----GMGGNIGIPALSLLNED--CELYVLEL 159
Query: 193 GMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNA 252
LE + VLNV + H++ LED +AK I+ +K+G VLN
Sbjct: 160 SSFQ----LETTYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYHNAKVG---VLNN 212
Query: 253 DDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSP- 311
+D L + V F D L + NG K+ MVK + P
Sbjct: 213 EDRLTFGENENQAKHTVSFA-ENSADYWL---KTENG---------KQYLMVKDEVILPC 259
Query: 312 ------GLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDA 365
G H +N AA A+A G++L + +L +F + R +L+ +GI+ +ND+
Sbjct: 260 EEATLVGRHNYMNILAATALAQAIGINLDSIRTALRHFKGLDHRFQLVHQANGIRWINDS 319
Query: 366 YNANPISTRAAIDLLKDIACNGKRVVILG------DMLELGSTERESHEKILSYC 414
N ST AA L + GK ++LG D EL + H I+ YC
Sbjct: 320 KATNVGSTVAA---LAGLYIEGKLHLLLGGDGKGADFSELAELINQPH--IICYC 369
>sp|A4YZK2|MURC_BRASO UDP-N-acetylmuramate--L-alanine ligase OS=Bradyrhizobium sp.
(strain ORS278) GN=murC PE=3 SV=1
Length = 467
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 118/265 (44%), Gaps = 17/265 (6%)
Query: 135 VGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGM 194
V + G+ GK+TT SM+A L++ G++ G N G L G + V+E
Sbjct: 110 VAIAGTHGKTTTTSMVAALLDAGGLDPTVINGGIINAYGTNARLGG----GEWMVVEADE 165
Query: 195 SGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
S G L+L ++ +V NV HL+ + E V A + V+ D
Sbjct: 166 S-DGTFLKLP----ADVAIVTNVDPEHLDHFKTFEAVQDAFRAFVENVPFYGFAVMCIDH 220
Query: 255 PLVANLTVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKER-----EMVKFVI 308
P+V L R++ +G DVRLV GG +VV + E+ V+
Sbjct: 221 PVVQALVGKIEDRRIITYGVNPQADVRLVDLTPMGGGSSFKVVFRDRKSGATHEISDIVL 280
Query: 309 PSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNA 368
P PG H A NA AA AVA G+S + ++ F V+ R +G+ +++D Y
Sbjct: 281 PMPGRHNASNATAAIAVARELGLSDEAIRKAIGGFGGVKRRFTRTGEWNGVTVIDD-YGH 339
Query: 369 NPISTRAAIDLLKDIACNGKRVVIL 393
+P+ A + ++ + NGK V ++
Sbjct: 340 HPVEIAAVLKAARE-SSNGKVVAVV 363
>sp|B5E2Z8|MURD_STRP4 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
pneumoniae serotype 19F (strain G54) GN=murD PE=3 SV=1
Length = 450
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 116/261 (44%), Gaps = 20/261 (7%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
++G+TGS GK+TT +MI L + G +G + +G S + A D L M
Sbjct: 114 IIGITGSNGKTTTTTMIGEVLTAAG-----QHGLLSGNIGYPASQVA-QIATDKNTLVME 167
Query: 194 MSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
+S +++ + PEI V+ N+ +H++ G E+ AK I + D VLN +
Sbjct: 168 LSS-FQLMGVQEF-HPEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMTAADFLVLNFN 225
Query: 254 DPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGL 313
LV +L V F D A + +G Q+ E M I PG
Sbjct: 226 QDLVKDLASKTEATVVPFSTLEKVD----GAYLEDG----QLYFRGEVVMAANEIGVPGS 277
Query: 314 HLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPIST 373
H NA A AVA L GV + +LS F V+ R + + G+K ND+ + N ++T
Sbjct: 278 HNVENALATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVDDIKGVKFYNDSKSTNILAT 337
Query: 374 RAAIDLLKDIACNGKRVVILG 394
+ A+ N K V+I G
Sbjct: 338 QKALSGFD----NSKVVLIAG 354
>sp|A4J2B2|MURC_DESRM UDP-N-acetylmuramate--L-alanine ligase OS=Desulfotomaculum reducens
(strain MI-1) GN=murC PE=3 SV=1
Length = 462
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 117/247 (47%), Gaps = 18/247 (7%)
Query: 135 VGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAV---DIAVLE 191
+ V G+ GK+TT SM AL LE N F + +G LS IG + + + V E
Sbjct: 112 IAVAGAHGKTTTTSMTALILEE---NSF----DPTIIIGGDLSNIGGNAKLGQGEYMVAE 164
Query: 192 MGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLN 251
S G L L P I VV N+ D HL+ G+ E++A+A + + + V+
Sbjct: 165 ADES-DGSFLLL----DPNIAVVTNIEDDHLDYYGTRENIAKAFRQFLAKLSAEGLAVIC 219
Query: 252 ADDPLVANLTVPRGVRKVFFG-WRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPS 310
DDP++ +T + V +G G D ++ + NG +V ++ER + +
Sbjct: 220 LDDPVLKEITTGLTCQVVTYGSLGSGADYQIKVLETRNGVNQGEVYFQEER-LGMLELHV 278
Query: 311 PGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANP 370
PG H +NA AA A+ + ++ +L F+ + R +++ +GI +V+D Y +P
Sbjct: 279 PGYHNLLNAMAAVAIGRHLNLDFEKIARALRKFTGAKRRFQVIGKVNGITVVDD-YAHHP 337
Query: 371 ISTRAAI 377
+A +
Sbjct: 338 TEVKATL 344
>sp|Q03L98|MURD_STRTD UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
thermophilus (strain ATCC BAA-491 / LMD-9) GN=murD PE=3
SV=1
Length = 450
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 113/247 (45%), Gaps = 22/247 (8%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAV---DIAVL 190
++G+TGS GK+TT +MIA L G G + +G S + ++V D V+
Sbjct: 114 IIGITGSNGKTTTTTMIADVLNHGG-----KSGVLSGNIGFPASEVA--QSVTNQDTLVM 166
Query: 191 EMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVL 250
E+ +++ + P I V+ N+ +H++ GS E+ AK I E D +L
Sbjct: 167 ELS---SFQLMGIESF-HPHIAVITNLMPTHIDYHGSFEEYVAAKWNIQNEMTSDDFIIL 222
Query: 251 NADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPS 310
N + L L + V F D A + NGGL + E M +
Sbjct: 223 NFNQDLAKELATQTNAQVVPFSTVEKVD----GAYLENGGL----YFKGELLMHADELGV 274
Query: 311 PGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANP 370
PG H NA A AVA L GVS + +LS+F V+ R + + + +K ND+ + N
Sbjct: 275 PGSHNVENALATIAVAKLSGVSNQAIKETLSSFGGVKHRLQFVDTIDDVKFYNDSKSTNI 334
Query: 371 ISTRAAI 377
++T+ A+
Sbjct: 335 LATQKAL 341
>sp|O67373|MURC_AQUAE UDP-N-acetylmuramate--L-alanine ligase OS=Aquifex aeolicus (strain
VF5) GN=murC PE=3 SV=1
Length = 454
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 112/261 (42%), Gaps = 15/261 (5%)
Query: 135 VGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGM 194
+ V+GS GK+TT SMIA L + G+ G R+G L R ++ V E
Sbjct: 109 IAVSGSHGKTTTTSMIAEILINAGLEPTVIIGGRLKRLGTNAKL---GRG-ELLVSEADE 164
Query: 195 SGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
S G L+L +P + V+ NV HL+ + E V A + V+N DD
Sbjct: 165 SD-GSFLKL----QPAVAVITNVDKEHLDFYENFERVKEAFEQFMNSVPFYGFAVVNLDD 219
Query: 255 PLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANG--GLGVQVVLEKEREMVKFVIPSPG 312
P +A L R + +G VR + G GV+ K +E+ + + G
Sbjct: 220 PTLAQLVKKSHERVITYGINSPALVRAKNLYLKEGRYEFGVEF---KGKELGRIHLGIAG 276
Query: 313 LHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPIS 372
+H NA AA VA GVS + SL F + R EL + +D Y +P
Sbjct: 277 IHNVYNALAATGVALELGVSFEVIKKSLEEFRNAERRLELKGYYKNSPVYDD-YGHHPTE 335
Query: 373 TRAAIDLLKDIACNGKRVVIL 393
+A I+ L+D+ + +V+
Sbjct: 336 IKAVINSLRDMYPDKNLLVVF 356
>sp|B8ZMZ6|MURD_STRPJ UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=murD
PE=3 SV=1
Length = 450
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 113/262 (43%), Gaps = 22/262 (8%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIG-IDRAVDIAVLEM 192
++G+TGS GK+TT +MI L + G +G + +G S + I D V+E+
Sbjct: 114 IIGITGSNGKTTTTTMIGEVLTAAG-----QHGLLSGNIGYPASQVAQIASDKDTLVMEL 168
Query: 193 GMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNA 252
+ E PEI V+ N+ +H++ GS + AK I + D VLN
Sbjct: 169 SSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAADFLVLNF 224
Query: 253 DDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPG 312
+ L +LT V F D A + +G Q+ E M I PG
Sbjct: 225 NQDLAKDLTSKTEATVVPFSTLEKVD----GAYLEDG----QLYFRGEVVMAANEIGVPG 276
Query: 313 LHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPIS 372
H NA A AVA L V + +LS F V+ R + + G+K ND+ + N ++
Sbjct: 277 SHNVENALATIAVAKLRDVDNQTIKETLSAFGGVKHRLQFVDDIKGVKFYNDSKSTNILA 336
Query: 373 TRAAIDLLKDIACNGKRVVILG 394
T+ A+ N K V+I G
Sbjct: 337 TQKALSGFD----NSKVVLIAG 354
>sp|Q5M4Y2|MURD_STRT2 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
thermophilus (strain ATCC BAA-250 / LMG 18311) GN=murD
PE=3 SV=1
Length = 450
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 113/247 (45%), Gaps = 22/247 (8%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAV---DIAVL 190
++G+TGS GK+TT +MIA L G G + +G S + ++V D V+
Sbjct: 114 IIGITGSNGKTTTTTMIADVLNHGG-----KSGVLSGNIGFPASEVA--QSVTNQDTLVM 166
Query: 191 EMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVL 250
E+ +++ + P I V+ N+ +H++ GS E+ AK I E D +L
Sbjct: 167 ELS---SFQLMGIESF-HPHIAVITNLMPTHIDYHGSFEEYVAAKWNIQNEMTSDDFIIL 222
Query: 251 NADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPS 310
N + L L + V F D A + NGGL + E M +
Sbjct: 223 NFNQDLAKELATQTNAQVVPFSTVEKVD----GAYLENGGL----YFKGELLMHADELGV 274
Query: 311 PGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANP 370
PG H NA A AVA L GVS + +LS+F V+ R + + + +K ND+ + N
Sbjct: 275 PGSHNVENALATIAVAKLSGVSNQAIKETLSSFGGVKHRLQFVDTIDDVKFYNDSKSTNI 334
Query: 371 ISTRAAI 377
++T+ A+
Sbjct: 335 LATQKAL 341
>sp|Q5M0D5|MURD_STRT1 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
thermophilus (strain CNRZ 1066) GN=murD PE=3 SV=1
Length = 450
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 113/247 (45%), Gaps = 22/247 (8%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAV---DIAVL 190
++G+TGS GK+TT +MIA L G G + +G S + ++V D V+
Sbjct: 114 IIGITGSNGKTTTTTMIADVLNHGG-----KSGVLSGNIGFPASEVA--QSVTNQDTLVM 166
Query: 191 EMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVL 250
E+ +++ + P I V+ N+ +H++ GS E+ AK I E D +L
Sbjct: 167 ELS---SFQLMGIESF-HPHIAVITNLMPTHIDYHGSFEEYVAAKWNIQNEMTSDDFIIL 222
Query: 251 NADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPS 310
N + L L + V F D A + NGGL + E M +
Sbjct: 223 NFNQDLAKELATQTNAQVVPFSTVEKVD----GAYLENGGL----YFKGELLMHADELGV 274
Query: 311 PGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANP 370
PG H NA A AVA L GVS + +LS+F V+ R + + + +K ND+ + N
Sbjct: 275 PGSHNVENALATIAVAKLSGVSNQAIKETLSSFGGVKHRLQFVDTIDDVKFYNDSKSTNI 334
Query: 371 ISTRAAI 377
++T+ A+
Sbjct: 335 LATQKAL 341
>sp|Q8DQM2|MURD_STRR6 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
pneumoniae (strain ATCC BAA-255 / R6) GN=murD PE=3 SV=1
Length = 450
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 113/262 (43%), Gaps = 22/262 (8%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIG-IDRAVDIAVLEM 192
++G+TGS GK+TT +MI L + G +G + +G S + I D V+E+
Sbjct: 114 IIGITGSNGKTTTTTMIGEVLTAAG-----QHGLLSGNIGYPASQVAQIASDKDTLVMEL 168
Query: 193 GMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNA 252
+ E PEI V+ N+ +H++ GS + AK I + D VLN
Sbjct: 169 SSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAADFLVLNF 224
Query: 253 DDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPG 312
+ L +LT V F D A + +G Q+ E M I PG
Sbjct: 225 NQDLAKDLTSKTEATVVPFSTLEKVD----GAYLEDG----QLYFRGEVVMAANEIGVPG 276
Query: 313 LHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPIS 372
H NA A AVA L V + +LS F V+ R + + G+K ND+ + N ++
Sbjct: 277 SHNVENALATIAVAKLRDVDNQTIKETLSAFGGVKHRLQFVDDIKGVKFYNDSKSTNILA 336
Query: 373 TRAAIDLLKDIACNGKRVVILG 394
T+ A+ N K V+I G
Sbjct: 337 TQKALSGFD----NSKVVLIAG 354
>sp|Q04LK1|MURD_STRP2 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=murD
PE=3 SV=1
Length = 450
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 113/262 (43%), Gaps = 22/262 (8%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIG-IDRAVDIAVLEM 192
++G+TGS GK+TT +MI L + G +G + +G S + I D V+E+
Sbjct: 114 IIGITGSNGKTTTTTMIGEVLTAAG-----QHGLLSGNIGYPASQVAQIASDKDTLVMEL 168
Query: 193 GMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNA 252
+ E PEI V+ N+ +H++ GS + AK I + D VLN
Sbjct: 169 SSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAADFLVLNF 224
Query: 253 DDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPG 312
+ L +LT V F D A + +G Q+ E M I PG
Sbjct: 225 NQDLAKDLTSKTEATVVPFSTLEKVD----GAYLEDG----QLYFRGEVVMAANEIGVPG 276
Query: 313 LHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPIS 372
H NA A AVA L V + +LS F V+ R + + G+K ND+ + N ++
Sbjct: 277 SHNVENALATIAVAKLRDVDNQTIKETLSAFGGVKHRLQFVDDIKGVKFYNDSKSTNILA 336
Query: 373 TRAAIDLLKDIACNGKRVVILG 394
T+ A+ N K V+I G
Sbjct: 337 TQKALSGFD----NSKVVLIAG 354
>sp|Q97RU8|MURD_STRPN UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
GN=murD PE=3 SV=1
Length = 450
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 113/262 (43%), Gaps = 22/262 (8%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIG-IDRAVDIAVLEM 192
++G+TGS GK+TT +MI L + G +G + +G S + I D V+E+
Sbjct: 114 IIGITGSNGKTTTTTMIGEVLTAAG-----QHGLLSGNIGYPASQVAQIASDKDTLVMEL 168
Query: 193 GMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNA 252
+ E PEI V+ N+ +H++ GS + AK I + D VLN
Sbjct: 169 SSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAADFLVLNF 224
Query: 253 DDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPG 312
+ L +LT V F D A + +G Q+ E M I PG
Sbjct: 225 NQDLAKDLTSKTEATVVPFSTLEKVD----GAYLEDG----QLYFRGEVVMAANEIGVPG 276
Query: 313 LHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPIS 372
H NA A AVA L V + +LS F V+ R + + G+K ND+ + N ++
Sbjct: 277 SHNVENALATIAVAKLRDVDNQTIKETLSAFGGVKHRLQFVDDIKGVKFYNDSKSTNILA 336
Query: 373 TRAAIDLLKDIACNGKRVVILG 394
T+ A+ N K V+I G
Sbjct: 337 TQKALSGFD----NSKVVLIAG 354
>sp|Q4QLG0|MURD_HAEI8 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Haemophilus
influenzae (strain 86-028NP) GN=murD PE=3 SV=1
Length = 437
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 132/295 (44%), Gaps = 46/295 (15%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGV-ALSLIGIDRAVDIAVLEM 192
+VG+TGS GKST +++ ++ GV V +G+ ALSL+ D ++ VLE+
Sbjct: 107 IVGITGSNGKSTVTTLVYEMAKAAGVKV-----GMGGNIGIPALSLLNED--CELYVLEL 159
Query: 193 GMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNA 252
LE + VLNV + H++ LED +AK I+ +++G VLN
Sbjct: 160 SSFQ----LETTYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYHNAEVG---VLNN 212
Query: 253 DDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSP- 311
+D L + + V F D L + NG K+ MVK + P
Sbjct: 213 EDKLTFGEGENQARQTVSFA-ENSADYWL---KTENG---------KQYLMVKDEVILPC 259
Query: 312 ------GLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDA 365
G H +N AA A+A G++L + +L +F + R +L+ +GI+ +ND+
Sbjct: 260 EEVTLVGRHNYMNILAATALAQAVGINLDSIRTALRHFKGLDHRFQLVHQANGIRWINDS 319
Query: 366 YNANPISTRAAIDLLKDIACNGKRVVILG------DMLELGSTERESHEKILSYC 414
N ST AA L + GK ++LG D EL + H I+ YC
Sbjct: 320 KATNVGSTVAA---LAGLYIEGKLHLLLGGDGKGADFSELAELINQPH--IICYC 369
>sp|B3EIL0|MURD_CHLL2 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Chlorobium
limicola (strain DSM 245 / NBRC 103803) GN=murD PE=3
SV=1
Length = 465
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 127/282 (45%), Gaps = 41/282 (14%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGV-NVFQSYGNWNNRVGVALSLIGIDRA-VDIAVLE 191
+ G+TG+ GK+TT +++ E+ G+ N ++++ N +GV S + +D A D+AV+E
Sbjct: 107 IAGITGTDGKTTTSTLLHRIAEADGMKNDYRAFSVGN--IGVPFSSLVLDMAPADLAVVE 164
Query: 192 MGMSGKGEILELARMARPEIRVVLNVGDSHLESL-GSLEDVARAKGEIFQESKLGDVCVL 250
+ LE RP++ V+ N+ HL+ G ++ A AK I+ + D V
Sbjct: 165 L----SSYQLEGCETFRPDVSVITNITPDHLDRYNGDMQLYAAAKFRIYASQRASDTLVY 220
Query: 251 NADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANG--GLGVQVVLEKEREMVKFVI 308
N DDPL+ R F G RG R+V + N G G + + M++ +
Sbjct: 221 NFDDPLL---------RAQFSGNGRGFPFRIVPFGIGNDVPGSGSEEAFFYDEGMIRHLT 271
Query: 309 PS----------------PGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSEL 352
G H NA AA A A G+ + ++S FS V+ R E
Sbjct: 272 AKGISEVFSGEDFLKSSFRGRHNIYNALAALAAAAALGIEESVARKAISGFSGVEHRQEF 331
Query: 353 LVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILG 394
+ S G++ +ND+ N + A+D A G V+I G
Sbjct: 332 VCSLDGVEWINDSKATNVNALLQALD-----AVPGSIVLIAG 368
>sp|C1CQG4|MURD_STRZT UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
pneumoniae (strain Taiwan19F-14) GN=murD PE=3 SV=1
Length = 450
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 115/261 (44%), Gaps = 20/261 (7%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
++G+TGS GK+TT +MI L + G +G + +G S + A D L M
Sbjct: 114 IIGITGSNGKTTTTTMIGEVLTAAG-----QHGLLSGNIGYPASQVA-QIATDKNTLVME 167
Query: 194 MSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
+S +++ + PEI V+ N+ +H++ G E+ AK I + D VLN +
Sbjct: 168 LSS-FQLMGVQEF-HPEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMAAADFLVLNFN 225
Query: 254 DPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGL 313
L +L V F D A + +G Q+ E M I PG
Sbjct: 226 QDLAKDLASKTEATVVPFSTLEKVD----GAYLEDG----QLYFRGEVVMAANEIGVPGS 277
Query: 314 HLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPIST 373
H NA A AVA L GV + +LS F V+ R + + G+K ND+ + N ++T
Sbjct: 278 HNVENALATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVDDIKGVKFYNDSKSTNILAT 337
Query: 374 RAAIDLLKDIACNGKRVVILG 394
+ A+ N K V+I G
Sbjct: 338 QKALSGFD----NSKVVLIAG 354
>sp|Q3ANV5|MURD_CHLCH UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Chlorobium
chlorochromatii (strain CaD3) GN=murD PE=3 SV=1
Length = 464
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 128/262 (48%), Gaps = 27/262 (10%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGV-NVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEM 192
+VG+TG+ GK+TT ++I E+ G + ++SY N+ + + S++ + D+AV+E+
Sbjct: 107 MVGITGTDGKTTTSTLIHTLCEADGKRHGYRSYSVGNSGIPFS-SMVLAMQPNDVAVIEL 165
Query: 193 GMSGKGEILELARMARPEIRVVLNVGDSHLESLG-SLEDVARAKGEIFQESKLGDVCVLN 251
LE + P++ ++ N+ HL+ G +++ A AK IF + GD + N
Sbjct: 166 ----SSYQLERSISFHPQVSLITNITPDHLDRYGQNMQRYAEAKYRIFMNQQAGDTFIYN 221
Query: 252 ADDPLV------ANLTVPRGVRKVFFGWRRGCDVRLVAAQV-ANGGLGVQVVLEKEREMV 304
DD ++ + + VP R V FG +V+L +V NG + VV+ + +
Sbjct: 222 QDDSMLQAAFGASQIAVP--CRSVAFGLEPLTNVQLDKRRVLVNGNM---VVVRQNDGAL 276
Query: 305 KFVIPSP--------GLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSR 356
+ ++ G H N AA AV G+ + +L+ F V+ R EL+ +
Sbjct: 277 QPIVAVDEVLNRAFRGKHNLSNVLAAVAVGEALGIGSEVMRQALTAFGGVEHRQELVATI 336
Query: 357 SGIKIVNDAYNANPISTRAAID 378
G++ +ND+ N + R A++
Sbjct: 337 DGVEWINDSKATNVNAMRQALE 358
>sp|B2A2H0|MURD_NATTJ UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Natranaerobius
thermophilus (strain ATCC BAA-1301 / DSM 18059 /
JW/NM-WN-LF) GN=murD PE=3 SV=1
Length = 461
Score = 72.0 bits (175), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 115/246 (46%), Gaps = 13/246 (5%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID-RAVDIAVLEM 192
L+ VTG+ GK+TT ++I E+ G +++ + GN VG+ LS I + D VLE+
Sbjct: 118 LIAVTGTNGKTTTTNLIGEFFEASGYSIYVA-GN----VGLPLSQIACEVTDTDFIVLEV 172
Query: 193 GMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNA 252
LE + RP++ ++LN+ HL+ G L+ RAK IF+ D V+N
Sbjct: 173 SSFQ----LEFIKGFRPKVSMILNITPDHLDWHGDLDSYIRAKMNIFKNQTSKDFSVVNV 228
Query: 253 DDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPG 312
DD L RK+ F +R + + + L + + K + K I PG
Sbjct: 229 DDETTFGLNRESKGRKLNFSKNS---LRTEGSFIEDDHLVINYLDTKTSIIHKHDILLPG 285
Query: 313 LHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPIS 372
H N AA F +S + +L FS V R EL+ +G+K +ND+ N +
Sbjct: 286 EHNLENVLAATTATLPFSISEENIRNTLKAFSGVDHRLELVRELNGVKFINDSKGTNVEA 345
Query: 373 TRAAID 378
+ AI+
Sbjct: 346 SLKAIN 351
>sp|B1IAM3|MURD_STRPI UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
pneumoniae (strain Hungary19A-6) GN=murD PE=3 SV=1
Length = 450
Score = 72.0 bits (175), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 113/262 (43%), Gaps = 22/262 (8%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIG-IDRAVDIAVLEM 192
++G+TGS GK+TT +MI L + G +G + +G S + I D V+E+
Sbjct: 114 IIGITGSNGKTTTTTMIGEVLTAAG-----QHGLLSGNIGYPASQVAQIASDKDTLVMEL 168
Query: 193 GMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNA 252
+ E PEI V+ N+ +H++ GS + AK I + D VLN
Sbjct: 169 SSFQLMGVQEF----HPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAADFLVLNF 224
Query: 253 DDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPG 312
+ L +LT + F D A + +G Q+ E M I PG
Sbjct: 225 NQDLAKDLTSKTEATVIPFSTLEKVD----GAYLEDG----QLYFRGEVVMAANEIGVPG 276
Query: 313 LHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPIS 372
H NA A AVA L V + +LS F V+ R + + G+K ND+ + N ++
Sbjct: 277 SHNVENALATIAVAKLRDVDNQTIKETLSAFGGVKHRLQFVDDIKGVKFYNDSKSTNILA 336
Query: 373 TRAAIDLLKDIACNGKRVVILG 394
T+ A+ N K V+I G
Sbjct: 337 TQKALSGFD----NSKVVLIAG 354
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,589,986
Number of Sequences: 539616
Number of extensions: 6830688
Number of successful extensions: 21272
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 623
Number of HSP's that attempted gapping in prelim test: 19151
Number of HSP's gapped (non-prelim): 1493
length of query: 440
length of database: 191,569,459
effective HSP length: 121
effective length of query: 319
effective length of database: 126,275,923
effective search space: 40282019437
effective search space used: 40282019437
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)