Query 013595
Match_columns 439
No_of_seqs 178 out of 438
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:26:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013595.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013595hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2569 G protein-coupled seve 100.0 1E-99 2E-104 747.0 9.4 420 18-439 18-440 (440)
2 PF06814 Lung_7-TM_R: Lung sev 100.0 1.2E-62 2.7E-67 489.2 28.2 281 128-416 1-295 (295)
3 KOG2568 Predicted membrane pro 100.0 1.4E-55 3E-60 454.4 27.8 291 119-419 151-450 (518)
4 PF10192 GpcrRhopsn4: Rhodopsi 99.7 8.5E-15 1.9E-19 143.3 23.0 244 148-404 3-256 (257)
5 KOG4290 Predicted membrane pro 98.3 8E-06 1.7E-10 82.0 13.8 218 128-363 115-351 (429)
6 KOG2569 G protein-coupled seve 97.8 0.00022 4.8E-09 72.4 11.9 199 12-212 110-393 (440)
7 COG4736 CcoQ Cbb3-type cytochr 71.4 3.5 7.5E-05 31.5 2.3 21 396-416 17-37 (60)
8 PF08733 PalH: PalH/RIM21; In 69.0 1.4E+02 0.0031 30.6 15.6 27 375-401 282-308 (348)
9 PRK11715 inner membrane protei 52.0 1.1E+02 0.0024 32.6 10.1 54 151-213 286-339 (436)
10 PF09437 Pombe_5TM: Pombe spec 51.0 6.6 0.00014 36.2 0.7 134 124-271 36-181 (256)
11 smart00805 AGTRAP Angiotensin 47.9 1.3E+02 0.0027 27.5 8.3 82 174-260 28-109 (159)
12 PF05545 FixQ: Cbb3-type cytoc 41.4 46 0.00099 24.0 3.8 31 398-435 19-49 (49)
13 PF13491 DUF4117: Domain of un 39.6 2.8E+02 0.006 24.7 9.8 50 176-225 60-109 (171)
14 COG2322 Predicted membrane pro 37.4 3.4E+02 0.0074 25.2 9.7 49 232-285 31-82 (177)
15 PF06123 CreD: Inner membrane 36.3 1.7E+02 0.0037 31.1 8.6 34 178-213 300-333 (430)
16 PF06396 AGTRAP: Angiotensin I 30.9 2.1E+02 0.0045 26.4 7.1 82 174-260 28-109 (162)
17 PF04875 DUF645: Protein of un 30.3 64 0.0014 24.4 3.0 41 39-81 5-45 (59)
18 COG4452 CreD Inner membrane pr 29.4 2.3E+02 0.0051 29.6 7.9 16 198-213 318-333 (443)
19 TIGR01294 P_lamban phospholamb 28.9 95 0.0021 22.3 3.5 33 336-370 11-45 (52)
20 PRK10582 cytochrome o ubiquino 28.6 3.8E+02 0.0082 23.0 10.2 86 172-266 12-97 (109)
21 cd08764 Cyt_b561_CG1275_like N 28.3 4.6E+02 0.0099 25.2 9.3 67 171-237 23-91 (214)
22 PRK10263 DNA translocase FtsK; 28.1 3.1E+02 0.0067 33.4 9.6 26 175-200 76-101 (1355)
23 cd00930 Cyt_c_Oxidase_VIII Cyt 25.8 84 0.0018 22.4 2.9 20 320-339 20-39 (43)
24 PF05393 Hum_adeno_E3A: Human 25.6 78 0.0017 26.1 3.0 26 177-202 36-61 (94)
25 PF06638 Strabismus: Strabismu 22.3 4E+02 0.0087 28.9 8.4 44 186-229 143-186 (505)
26 PF03381 CDC50: LEM3 (ligand-e 21.2 3.4E+02 0.0073 27.0 7.3 72 120-199 192-270 (278)
27 PF08400 phage_tail_N: Prophag 21.2 1.7E+02 0.0037 26.0 4.6 45 123-169 46-92 (134)
28 PF04272 Phospholamban: Phosph 21.1 2E+02 0.0043 20.7 4.0 32 336-369 11-44 (52)
29 PF13706 PepSY_TM_3: PepSY-ass 21.1 2.5E+02 0.0054 18.9 4.5 24 200-223 1-24 (37)
No 1
>KOG2569 consensus G protein-coupled seven transmembrane receptor [Signal transduction mechanisms]
Probab=100.00 E-value=9.6e-100 Score=747.00 Aligned_cols=420 Identities=67% Similarity=1.123 Sum_probs=406.6
Q ss_pred cccceeeEEEeeecCCCCCceeeccccCCCCcEEEEEEEEeEeecCCCCCCCCCCeeeEEEeccccHHHHH--HHhccCC
Q 013595 18 LSLSTAEIKSLTITADSRPMILFEKFGFTHPGHVTISVSSVSVASSSAAPNPNPSRLGFFLLSEESLLQVL--VEIQQNP 95 (439)
Q Consensus 18 ~~~~~a~~~~~~~~~d~R~~i~~~~FGF~~gG~~~v~v~~~~~~~~~~~~~~~~~~~Gf~L~~~~~~~~~~--~~~~~~~ 95 (439)
.+.+.|+|++..|.+|+|+.+.+++|||.+-|+..|.++.+.+.+ +.++.|.+++||++++++++.++. ++.+++.
T Consensus 18 ~~~t~~~~~~~~i~~d~rp~~~~e~~~~~~~~~~~v~~~~~~v~s--~~p~~d~sr~~~f~~s~~s~~~~l~p~~~~q~~ 95 (440)
T KOG2569|consen 18 ISITRAEIKSLTISDDSRPMILLEKFGQTHVGHVTVSASSVAVVS--SDPNLDASRLGFFLLSGESEMAVLAPLEFPQSR 95 (440)
T ss_pred hhhhhhhccCcccccCcCcchhhhccceeeecceecccceEEeec--CCCCCchhcCCCcccCchHHHhhhhhccccccc
Confidence 567999999999999999999999999999999999999988864 334678899999999999888888 7888999
Q ss_pred CcccccccceeeEEEeecCCCCCCCcceeEEEecCCCeeEEEEEEcCCCceeEEEEEEEEEE-ecCCCCCCccCccCccc
Q 013595 96 NFCVLDSHYILRLFNFRELSPPPHSRFEQSYPVTAPNEYSLFFANCAPETQVSMNVKTEVYN-LDRDGSRDYLSAGLTQL 174 (439)
Q Consensus 96 ~~C~l~~~~~~~~~~f~~~~~~~~~~~~~~~~I~~~g~Y~l~~~~C~~~~~~~~~~~v~~~n-~N~~G~~~yLsa~~~pl 174 (439)
+.|.+++.++.+.++|.|+.+++.+.++..|+++.+|.|+++|+||.|....+|.++++++| .+|+|.++||||++.+|
T Consensus 96 ~~~~~~s~~~l~~~t~~ql~~~p~s~~~~~~~~kd~~~y~l~f~nc~~~~~~sm~V~~~~~~~~~p~g~~dyl~ag~~~L 175 (440)
T KOG2569|consen 96 GPCVLDSLYVLHMFTFVQLSPPPGSGFSHHYPLKDPGQYSLFFANCVPETKGSMVVRVEMYNLLEPNGSRDYLSAGETSL 175 (440)
T ss_pred CccccccccchhhhhhhhcCCCCCCCceEEecCCCCceEEEEEeeccccccceEEEEEEeeeccCCCCcccccccccccC
Confidence 99999999999999999999988889999999999999999999999999999999999997 67888899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCccchHHHHHHHHHHHHHH
Q 013595 175 PSLFFFFSVLYIGFFGIWIYICLTNKRSVHRIHLVMGILLIMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVL 254 (439)
Q Consensus 175 p~~Y~~~~i~y~~l~~~W~~~~~k~r~~v~~Ih~~i~~vi~l~~l~~~~~~~~y~~in~~G~~~~w~v~~~i~~~~k~~l 254 (439)
|.+|..|+++|+..++.|.+.|+++++.+++||.+|++++++|+++++|++.+|||++++|+++||++.+||++++||.+
T Consensus 176 p~ly~~~sl~Yl~~~v~w~~l~~~sk~~v~rIh~lma~lV~lKsl~l~~~al~k~~~sk~g~~~gw~vl~yI~~~lkg~l 255 (440)
T KOG2569|consen 176 PRLYFDFSLLYLDFLVFWCYLLKQSKSVVYRIHDLMAVLVFLKSLSLICHALNKHYVSKTGTVHGWAVLFYIFHFLKGVL 255 (440)
T ss_pred chhHHHHHHHHHHhhhheeeeEeechHHHHHHHHHHHHHHhHcchHHHhhccceEEEEecCceeeeeehhhHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccccccccccccchhhhhhhhHHHHHHHHhhheeecccCcCccchhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 013595 255 LFTVIVLIGTGWSFLKPFLQEREKKVLMIVIPLQVLANVASVVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSI 334 (439)
Q Consensus 255 ~f~lilLI~~Gwg~vkp~L~~~~kkv~~ivi~l~v~~nia~iii~~~~~~~~~~~~w~~~~~lvd~~~~~ailf~i~wsi 334 (439)
+|.++++||+||+++||+|++++||++|+++|+||++|+|.|+++|+++++++|++|.+++.++|+.|||+|.|||+|+|
T Consensus 256 lf~tivligTgwSflk~~l~dkekkv~miviplqvlania~Iv~dEte~~~q~~~tw~~if~lvd~~cc~ai~fpIvwSi 335 (440)
T KOG2569|consen 256 LFTTIVLIGTGWSFLKPKLQDKEKKVLMIVIPLQVLANIASIVTDETEPLTQDWVTWNQIFLLVDLKCCCAILFPIVWSI 335 (440)
T ss_pred heeEEEeeccCceeechhhccccceEEEEEecHHHHHHhHheeecCCCcchhhhhhhhheeeeecceeeeEEeeeeeeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHhhhheeeeEeeeccccchhhcHHhHHHHHHHHHHHHHHHhhccCCCC
Q 013595 335 RSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVSNAAEELASLAFYIVIFYMFRPLET 414 (439)
Q Consensus 335 ~~L~~~s~td~k~~~n~~KL~lfr~f~~~vv~yiyft~iiv~~~~~~~~w~~~W~~~~~~e~~~~~ffv~i~~~fRP~~~ 414 (439)
|||||+|+|||||++|+.||++||+||+++++|+|||||+++.++..++++++|+..++.|+++++||+.+||+|||.+.
T Consensus 336 ~~L~E~s~tDgkaa~nl~kL~lfrqfyi~vi~yiyftrIvv~~l~~~~~fky~W~~~~a~E~at~aFy~l~gykFRP~~~ 415 (440)
T KOG2569|consen 336 RHLRETSKTDGKAAANLIKLPLFRQFYIVVIGYIYFTRIVVFALKTIAVFKYQWLSFAAEEMATLAFYVLMGYKFRPVES 415 (440)
T ss_pred hhhhhccCCcchhhcCcccchHHHHHHhhhhhhhhhhhhhhhhhhhccceeeeeHHHHHHHHHHHHHHhhheeeeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeccchhHHHHHhhcccccCCC
Q 013595 415 NEYFVLDEEEEEAAEQALRDEEFEL 439 (439)
Q Consensus 415 n~y~~l~~de~~~~~~~~~~~~~~~ 439 (439)
|+|+.++|||||++|++++||+||+
T Consensus 416 ~~Yf~vddeeee~~~~~l~e~~~~~ 440 (440)
T KOG2569|consen 416 NEYFVVDDEEEEADELALKEDEFEE 440 (440)
T ss_pred CCccccCchhhhhhhhhcccccccC
Confidence 9999999999999999999999996
No 2
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=100.00 E-value=1.2e-62 Score=489.23 Aligned_cols=281 Identities=38% Similarity=0.706 Sum_probs=259.7
Q ss_pred ecCCCeeEEEEEEcCCC-----ceeEEEEEEEEEEecCCCCCCccCccCccchHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 013595 128 VTAPNEYSLFFANCAPE-----TQVSMNVKTEVYNLDRDGSRDYLSAGLTQLPSLFFFFSVLYIGFFGIWIYICLTNKRS 202 (439)
Q Consensus 128 I~~~g~Y~l~~~~C~~~-----~~~~~~~~v~~~n~N~~G~~~yLsa~~~plp~~Y~~~~i~y~~l~~~W~~~~~k~r~~ 202 (439)
|+|+|+|++++++|+|+ .+.+++++++++ ||+ |||||+|+|+|++|++|+++|++++++|++.|+|||++
T Consensus 1 i~~~G~Y~~~~~~C~~~~~~~~~~~~~~~~i~~~--N~~---gyL~a~~~pl~~~y~~~~i~y~~~~~~W~~~~~~~~~~ 75 (295)
T PF06814_consen 1 ITKTGYYCVFFANCNPSTSSSNSNISFEGSITFK--NPY---GYLPAGEYPLPPFYGVMSIVYAVLLIIWLFLCFKNRKS 75 (295)
T ss_pred CCCceEEEEEEEEcCCccccCCcceEEEEEEEEE--CCC---CCCChhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 57999999999999865 467899999988 874 59999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCc-cchHHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhh
Q 013595 203 VHRIHLVMGILLIMKALNLICAAEDKHYVKVTGTP-HGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEREKKVL 281 (439)
Q Consensus 203 v~~Ih~~i~~vi~l~~l~~~~~~~~y~~in~~G~~-~~w~v~~~i~~~~k~~l~f~lilLI~~Gwg~vkp~L~~~~kkv~ 281 (439)
++|||++|+++++++++|+++++.+|+++|++|++ ++|.++.++++++|++++|+++++||+|||++||+|++++||++
T Consensus 76 ~~~ih~~i~~vl~l~~~~~~~~~~~y~~~n~~G~~~~~~~~~~~i~~~~k~~~~~~llllis~Gygivkp~L~~~~~~v~ 155 (295)
T PF06814_consen 76 VLPIHYLILAVLILKMLELAFWFIYYHYINKTGTPSEGWMIFAYIFSALKRTLSFFLLLLISLGYGIVKPSLGRREKKVL 155 (295)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcchheeccccCcceeehh
Confidence 99999999999999999999999999999999995 89999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhheeecccCcCccchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHH
Q 013595 282 MIVIPLQVLANVASVVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFY 361 (439)
Q Consensus 282 ~ivi~l~v~~nia~iii~~~~~~~~~~~~w~~~~~lvd~~~~~ailf~i~wsi~~L~~~s~td~k~~~n~~KL~lfr~f~ 361 (439)
++++++|+++++++++.++.++++.++..|..++.++|+ |++..+|++|+++||++ +.+|+|++||++||+|||||+
T Consensus 156 ~l~i~~~v~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~wi~~sL~~-t~~~lk~~~q~~KL~lyr~f~ 232 (295)
T PF06814_consen 156 MLVILYFVFSNIAYIIREESSPSDSSYASWNFIFFLLPL--CILDLFFIVWIFRSLSK-TIRDLKARRQTAKLSLYRRFY 232 (295)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccchhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998887777777777789999999999 44455599999999998 456899999999999999999
Q ss_pred HHHHHHhhhheeeeEeee--------ccccchhhcHHhHHHHHHHHHHHHHHHhhccCCCCCc
Q 013595 362 IVVIGYLYFTRIVVFALK--------TIAAYKYQWVSNAAEELASLAFYIVIFYMFRPLETNE 416 (439)
Q Consensus 362 ~~vv~yiyft~iiv~~~~--------~~~~w~~~W~~~~~~e~~~~~ffv~i~~~fRP~~~n~ 416 (439)
+++++|+++++++++..+ ...+||++|+.+++||+++++++++++|+|||++|||
T Consensus 233 ~~li~~v~~~~i~~~~~~~~~~~~~~~~~~W~~~W~~~~~~~~l~~~~~~~i~~lwRPs~~n~ 295 (295)
T PF06814_consen 233 NVLIAYVVFSRIFVVLSSIIFNTSDSIEKPWKYQWFIEAFWELLYFVFLVAIMYLWRPSENNQ 295 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccHHHHhHHHHHHHHHHHHHHHHHHheeCCCCCCc
Confidence 999999999987554432 2458999999999999999999999999999999997
No 3
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.4e-55 Score=454.35 Aligned_cols=291 Identities=18% Similarity=0.300 Sum_probs=248.8
Q ss_pred CCcceeEEEecCCCeeEEEEEEcCCCc-eeEEEEEEEEEEecCCCCCCccCccCccchHHHHHHHHHHHHHHHHHHHHHH
Q 013595 119 HSRFEQSYPVTAPNEYSLFFANCAPET-QVSMNVKTEVYNLDRDGSRDYLSAGLTQLPSLFFFFSVLYIGFFGIWIYICL 197 (439)
Q Consensus 119 ~~~~~~~~~I~~~g~Y~l~~~~C~~~~-~~~~~~~v~~~n~N~~G~~~yLsa~~~plp~~Y~~~~i~y~~l~~~W~~~~~ 197 (439)
.+..+..|+|+++|+||+++..|+++. ....+++++|+ ||+ |||||.++|++++|++|+++|.+++++|.+.|+
T Consensus 151 ~~m~~~~~~I~ktG~Y~v~~~~~~~s~~~~~~~~~v~wk--Npy---GyL~a~~~Plm~fy~~m~laYvllgllW~~~~~ 225 (518)
T KOG2568|consen 151 VGMSPPAYPIKKTGYYCVYFISCDSSLESYKATGSVNWK--NPY---GYLPASDAPLMPFYGFMCLAYVLLGLLWFFQCA 225 (518)
T ss_pred cCCCCceEEeccCcEEEEEEEeecCccccccccceEEEE--CCC---CCcChhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999874 46777889999 884 599999999999999999999999999999999
Q ss_pred HhcchhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCC-ccchHHHHHHHHHHHHHHHHHHHHhhhccccccccccccc
Q 013595 198 TNKRSVHRIHLVMGILLIMKALNLICAAEDKHYVKVTGT-PHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQER 276 (439)
Q Consensus 198 k~r~~v~~Ih~~i~~vi~l~~l~~~~~~~~y~~in~~G~-~~~w~v~~~i~~~~k~~l~f~lilLI~~Gwg~vkp~L~~~ 276 (439)
||||+++|||++|+++++++++|+++++.+|.+.|.+|. |++..++..+++++|++++|+|+++||+|||+|||+||+.
T Consensus 226 ~y~~diL~lQ~~I~~Vi~lgm~E~av~y~~y~~~N~tG~~~~~~~~~a~i~sa~K~Tlsr~LlLIVSlGYGIVkP~Lg~~ 305 (518)
T KOG2568|consen 226 QYWHDILPLQKYITAVIALGMAETAVFYSEYANFNSTGMSPKVYTVFASILSAIKKTLSRLLLLIVSLGYGIVKPTLGGT 305 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcceEecCcchH
Confidence 999999999999999999999999999999999999999 4788899999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHhhheeecccCcCccchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 013595 277 EKKVLMIVIPLQVLANVASVVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTL 356 (439)
Q Consensus 277 ~kkv~~ivi~l~v~~nia~iii~~~~~~~~~~~~w~~~~~lvd~~~~~ailf~i~wsi~~L~~~s~td~k~~~n~~KL~l 356 (439)
..|+++++..+++++.+..+.-.....+. ...-...+.++|++.+.++ ++.|++++|..|.+. .|.+||.+||+|
T Consensus 306 l~rv~~ig~~~~i~s~i~~l~~~~g~~se--~~~~~~lf~~ip~ai~d~~--f~~wIF~SL~~Tlk~-Lr~rRn~vKl~l 380 (518)
T KOG2568|consen 306 LLRVCQIGVIYFIASEILGLARVIGNISE--LSSLLILFAALPLAILDAA--FIYWIFISLAKTLKK-LRLRRNIVKLSL 380 (518)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcCccc--ccchhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 99999999999988887654322212211 1112367888999999888 789999999877654 578999999999
Q ss_pred HHHHHHHHH----H---HhhhheeeeEeeeccccchhhcHHhHHHHHHHHHHHHHHHhhccCCCCCceee
Q 013595 357 FRQFYIVVI----G---YLYFTRIVVFALKTIAAYKYQWVSNAAEELASLAFYIVIFYMFRPLETNEYFV 419 (439)
Q Consensus 357 fr~f~~~vv----~---yiyft~iiv~~~~~~~~w~~~W~~~~~~e~~~~~ffv~i~~~fRP~~~n~y~~ 419 (439)
||||.++++ + ++.++.+..........||.+|+.+++|.++++..+++|+++|||++||++++
T Consensus 381 Yr~F~n~l~~~Vvas~~~i~~~~~~~~~~~~~~~Wk~~Wv~~a~W~~l~~~iLvvI~~LWrPS~nn~ryA 450 (518)
T KOG2568|consen 381 YRKFTNTLAFSVVASFAFILVETIFYSIMSCNKDWKERWVDTAFWPLLFFLILVVIMFLWRPSQNNQRYA 450 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhccHHHHHHHHHHHHHHhcCCCCCCcccc
Confidence 999999843 2 23333332222234567999999999999999999999999999999999555
No 4
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). This region of 270 amino acids is the seven transmembrane alpha-helical domains included within five GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor (GPCR) protein, conserved from nematodes to humans [].
Probab=99.68 E-value=8.5e-15 Score=143.29 Aligned_cols=244 Identities=18% Similarity=0.292 Sum_probs=168.3
Q ss_pred EEEEEEEEEEecCCC-CCCccCccCccchHHHHHHHHHHHHHHHHHHHHH--HHhcchhhhHHHHHHHHHHHHHHHHHHH
Q 013595 148 SMNVKTEVYNLDRDG-SRDYLSAGLTQLPSLFFFFSVLYIGFFGIWIYIC--LTNKRSVHRIHLVMGILLIMKALNLICA 224 (439)
Q Consensus 148 ~~~~~v~~~n~N~~G-~~~yLsa~~~plp~~Y~~~~i~y~~l~~~W~~~~--~k~r~~v~~Ih~~i~~vi~l~~l~~~~~ 224 (439)
+++.++++. ||+| ...++|++|+++|.+|.++.++|.++.++-.... .++|+..++...++++.++++.++.++.
T Consensus 3 ~~~y~i~l~--N~~~~~~~hfS~de~gi~~~~~~~~~~y~vl~~~~~~~~~~l~~~~~~h~~~~l~~~~l~l~~~s~~l~ 80 (257)
T PF10192_consen 3 KIEYEIWLT--NGGDFWTSHFSADEQGILEIYLLFLLLYIVLSIISIYSIQSLKKRGLMHPVYKLFSAALLLQFLSLLLN 80 (257)
T ss_pred ceEEEEEEE--eCCCccccccChhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456667777 6654 6789999999999999999999999998866544 5678899999999999999999999988
Q ss_pred HHHhHhhhhcCCc-cchHHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhh-hhhHHHHHHHHhhhee----e
Q 013595 225 AEDKHYVKVTGTP-HGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEREKKVL-MIVIPLQVLANVASVV----I 298 (439)
Q Consensus 225 ~~~y~~in~~G~~-~~w~v~~~i~~~~k~~l~f~lilLI~~Gwg~vkp~L~~~~kkv~-~ivi~l~v~~nia~ii----i 298 (439)
...|-....+|.. ....++..+++.+-+.++..+++++|.||++.|++++...+... .+.+.+.++.-+..+. .
T Consensus 81 ~ih~~~ya~nG~G~~~l~~~g~i~~~~s~~~~~lLLllla~GwTi~~~~~s~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (257)
T PF10192_consen 81 LIHYIVYAYNGVGIPFLKVLGQIFDILSQILFLLLLLLLAKGWTITRSRLSQSNSVKLIVFIILYVVLQVILFIWENRFY 160 (257)
T ss_pred HHHHHHHHccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHcccccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8888777788884 46788889999999999999999999999999999986554432 2222222222222222 1
Q ss_pred cccCcCccchhhHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHhhhheeeeEe
Q 013595 299 GETGPFIKDWVTWNQVF-LLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFA 377 (439)
Q Consensus 299 ~~~~~~~~~~~~w~~~~-~lvd~~~~~ailf~i~wsi~~L~~~s~td~k~~~n~~KL~lfr~f~~~vv~yiyft~iiv~~ 377 (439)
.+.......+.+|.-.. +.+-++. .+|-+..++.+. +.+++.+|.+-|.+|...-..+....++++..
T Consensus 161 ~d~~~~~~~y~s~pGy~li~lri~~-------~~~F~~~~~~t~----~~~~~~~k~~Fy~~f~~~~~lWFl~~Pv~~~i 229 (257)
T PF10192_consen 161 FDPHSYLYFYDSWPGYILIALRIVL-------AIWFIYGLYQTI----SKEKDPEKRKFYLPFGIIFSLWFLSLPVIVII 229 (257)
T ss_pred CCcccceeecccHHHHHHHHHHHHH-------HHHHHHHHHHHH----HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222344453322 2222221 223233333221 23455578899999985544444434555555
Q ss_pred eeccccchhhcHHhHHHHHHHHHHHHH
Q 013595 378 LKTIAAYKYQWVSNAAEELASLAFYIV 404 (439)
Q Consensus 378 ~~~~~~w~~~W~~~~~~e~~~~~ffv~ 404 (439)
....+||..+-+.......+.++.+++
T Consensus 230 a~~v~~~~R~kvv~~~~~~~~~~~~~~ 256 (257)
T PF10192_consen 230 AHFVDPWVREKVVTGGNLLIQFIAYIV 256 (257)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHh
Confidence 566888888888888888888777664
No 5
>KOG4290 consensus Predicted membrane protein [Function unknown]
Probab=98.35 E-value=8e-06 Score=81.97 Aligned_cols=218 Identities=13% Similarity=0.177 Sum_probs=132.0
Q ss_pred ecCCCeeEEEEEEcCC----Cc--eeEEEEEEEEEEecCC--C--CCCc-cCccCccchHHHHHHHHHHHHHHHHHHHHH
Q 013595 128 VTAPNEYSLFFANCAP----ET--QVSMNVKTEVYNLDRD--G--SRDY-LSAGLTQLPSLFFFFSVLYIGFFGIWIYIC 196 (439)
Q Consensus 128 I~~~g~Y~l~~~~C~~----~~--~~~~~~~v~~~n~N~~--G--~~~y-Lsa~~~plp~~Y~~~~i~y~~l~~~W~~~~ 196 (439)
|+.+-.|.+..+.|.+ ++ -.++..++-.. ||+ | +-+| .|++|..+..+|+.|.++|+++.++-....
T Consensus 115 iPgp~~W~v~l~acytCqw~dss~~ntI~ydi~Lt--NPn~ea~~pft~~fS~deqnlie~fll~llvY~vL~~iq~~av 192 (429)
T KOG4290|consen 115 IPGPQTWHVFLAACYTCQWDDSSQMNTIGYDILLT--NPNIEAIDPFTLPFSLDEQNLIEAFLLMLLVYMVLVLIQGLAV 192 (429)
T ss_pred cCCcceeeeeeeecccccccCcCccccccceEEEe--CCcccccCccccceeeccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446678888887742 11 13444444444 555 3 3456 999999999999999999999999988877
Q ss_pred HHhcchhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCC--ccchHHHHHHHHHHHHHHHHHHHHhhhccccccccccc
Q 013595 197 LTNKRSVHRIHLVMGILLIMKALNLICAAEDKHYVKVTGT--PHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQ 274 (439)
Q Consensus 197 ~k~r~~v~~Ih~~i~~vi~l~~l~~~~~~~~y~~in~~G~--~~~w~v~~~i~~~~k~~l~f~lilLI~~Gwg~vkp~L~ 274 (439)
+ |+-.+.|...++++..+.++..+...++-...++|. |. ......++......-...++++.++||.|+++.-+
T Consensus 193 ~---rkm~P~~~il~vlvtm~lv~~~licanllhfa~dG~Gep~-~~~aaEvldisS~~~~~lLLi~LakGW~i~r~~~s 268 (429)
T KOG4290|consen 193 T---RKMLPSWLILLVLVTMFLVQAGLICANLLHFAKDGFGEPK-FFDAAEVLDISSSLPAYLLLIWLAKGWVIFRVAAS 268 (429)
T ss_pred h---cccCchHhHHHHHHHHHHHHHHHHHHHHHHHhhccCCcee-ecCHHHHHHHHhhHHHHHHHHHHhccceEEeehhh
Confidence 6 445677777777777777766555555544456665 42 23344556677788888999999999999999776
Q ss_pred cchhhhhhhhHHHHHHHHhhheeecccCc-----CccchhhH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHH
Q 013595 275 EREKKVLMIVIPLQVLANVASVVIGETGP-----FIKDWVTW-NQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAA 348 (439)
Q Consensus 275 ~~~kkv~~ivi~l~v~~nia~iii~~~~~-----~~~~~~~w-~~~~~lvd~~~~~ailf~i~wsi~~L~~~s~td~k~~ 348 (439)
....-+.|--.++.-+..+.+. -+-+++ +...|..| ..+.++++++...+.+ -.+|.++ |..
T Consensus 269 ~~~wds~m~wvf~~~f~~vL~~-W~~tev~dv~hd~d~y~nwpG~~viilRii~a~wfl----ielr~~i-------k~E 336 (429)
T KOG4290|consen 269 MSRWDSPMKWVFFTSFVFVLTP-WFWTEVIDVMHDNDCYNNWPGEVVIILRIIVAFWFL----IELRVPI-------KLE 336 (429)
T ss_pred ccccccchhhhhhhhhhhheee-hhhcCceeeeechhhhhccchHHHHHHHHHHHHHHH----HHeeeeh-------hhh
Confidence 6544444422222111111110 011111 12234445 4556666654333221 1233332 345
Q ss_pred HHHHHHHHHHHHHHH
Q 013595 349 RNLAKLTLFRQFYIV 363 (439)
Q Consensus 349 ~n~~KL~lfr~f~~~ 363 (439)
+.++|..-|-+|..-
T Consensus 337 hStkK~eFl~hfgag 351 (429)
T KOG4290|consen 337 HSTKKCEFLSHFGAG 351 (429)
T ss_pred hHHHHHHHHHHhccc
Confidence 667788888888754
No 6
>KOG2569 consensus G protein-coupled seven transmembrane receptor [Signal transduction mechanisms]
Probab=97.80 E-value=0.00022 Score=72.36 Aligned_cols=199 Identities=11% Similarity=0.029 Sum_probs=123.6
Q ss_pred HHHHHhcccceeeEEEeeecCCCCCceeeccccCCCCcEEEEEEEEeEeecCCCCCCCCCCeeeEEEeccccHHHHHHHh
Q 013595 12 VLLLSLLSLSTAEIKSLTITADSRPMILFEKFGFTHPGHVTISVSSVSVASSSAAPNPNPSRLGFFLLSEESLLQVLVEI 91 (439)
Q Consensus 12 ~~~~~~~~~~~a~~~~~~~~~d~R~~i~~~~FGF~~gG~~~v~v~~~~~~~~~~~~~~~~~~~Gf~L~~~~~~~~~~~~~ 91 (439)
.+..+..++.+.+-||.+++||.|-...+.++|+.++|++.|+++......|+++.+.+ +..|+.|.+-...-. ..|+
T Consensus 110 t~~ql~~~p~s~~~~~~~~kd~~~y~l~f~nc~~~~~~sm~V~~~~~~~~~p~g~~dyl-~ag~~~Lp~ly~~~s-l~Yl 187 (440)
T KOG2569|consen 110 TFVQLSPPPGSGFSHHYPLKDPGQYSLFFANCVPETKGSMVVRVEMYNLLEPNGSRDYL-SAGETSLPRLYFDFS-LLYL 187 (440)
T ss_pred hhhhcCCCCCCCceEEecCCCCceEEEEEeeccccccceEEEEEEeeeccCCCCccccc-ccccccCchhHHHHH-HHHH
Confidence 34566778999999999999999999999999999999999999876555555433222 334555554322111 2255
Q ss_pred ccCCCccccccc-------------------------------cee---------------------eEE----------
Q 013595 92 QQNPNFCVLDSH-------------------------------YIL---------------------RLF---------- 109 (439)
Q Consensus 92 ~~~~~~C~l~~~-------------------------------~~~---------------------~~~---------- 109 (439)
+....-|.+..+ ++. .+|
T Consensus 188 ~~~v~w~~l~~~sk~~v~rIh~lma~lV~lKsl~l~~~al~k~~~sk~g~~~gw~vl~yI~~~lkg~llf~tivligTgw 267 (440)
T KOG2569|consen 188 DFLVFWCYLLKQSKSVVYRIHDLMAVLVFLKSLSLICHALNKHYVSKTGTVHGWAVLFYIFHFLKGVLLFTTIVLIGTGW 267 (440)
T ss_pred HhhhheeeeEeechHHHHHHHHHHHHHHhHcchHHHhhccceEEEEecCceeeeeehhhHHHHHhhhhheeEEEeeccCc
Confidence 555555554211 000 001
Q ss_pred EeecCCCCCCCc-----------c--eeEEEec-CCCeeEEEEEEcCCCc------eeEEEEEEEEEE--ecCCC-CCCc
Q 013595 110 NFRELSPPPHSR-----------F--EQSYPVT-APNEYSLFFANCAPET------QVSMNVKTEVYN--LDRDG-SRDY 166 (439)
Q Consensus 110 ~f~~~~~~~~~~-----------~--~~~~~I~-~~g~Y~l~~~~C~~~~------~~~~~~~v~~~n--~N~~G-~~~y 166 (439)
+|-+..-++... + =.+..++ .++.|..+++-|.--. --++..-+.|.- ..... ++|+
T Consensus 268 Sflk~~l~dkekkv~miviplqvlania~Iv~dEte~~~q~~~tw~~if~lvd~~cc~ai~fpIvwSi~~L~E~s~tDgk 347 (440)
T KOG2569|consen 268 SFLKPKLQDKEKKVLMIVIPLQVLANIASIVTDETEPLTQDWVTWNQIFLLVDLKCCCAILFPIVWSIRHLRETSKTDGK 347 (440)
T ss_pred eeechhhccccceEEEEEecHHHHHHhHheeecCCCcchhhhhhhhheeeeecceeeeEEeeeeeeehhhhhhccCCcch
Confidence 111100000000 0 0111223 3456677777665221 123334444441 11111 5679
Q ss_pred cCccCccchHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHH
Q 013595 167 LSAGLTQLPSLFFFFSVLYIGFFGIWIYICLTNKRSVHRIHLVMGI 212 (439)
Q Consensus 167 Lsa~~~plp~~Y~~~~i~y~~l~~~W~~~~~k~r~~v~~Ih~~i~~ 212 (439)
+++++.|||.++-.+.++.+-....|++...+++..++++||+.-+
T Consensus 348 aa~nl~kL~lfrqfyi~vi~yiyftrIvv~~l~~~~~fky~W~~~~ 393 (440)
T KOG2569|consen 348 AAANLIKLPLFRQFYIVVIGYIYFTRIVVFALKTIAVFKYQWLSFA 393 (440)
T ss_pred hhcCcccchHHHHHHhhhhhhhhhhhhhhhhhhhccceeeeeHHHH
Confidence 9999999999999999999999999999999999999999998543
No 7
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=71.42 E-value=3.5 Score=31.52 Aligned_cols=21 Identities=33% Similarity=0.641 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhhccCCCCCc
Q 013595 396 LASLAFYIVIFYMFRPLETNE 416 (439)
Q Consensus 396 ~~~~~ffv~i~~~fRP~~~n~ 416 (439)
.++++|+.++.+.|||..+..
T Consensus 17 ~~~l~fiavi~~ayr~~~K~~ 37 (60)
T COG4736 17 AFTLFFIAVIYFAYRPGKKGE 37 (60)
T ss_pred HHHHHHHHHHHHHhcccchhh
Confidence 456777888999999987654
No 8
>PF08733 PalH: PalH/RIM21; InterPro: IPR014844 PalH (also known as RIM21) is a transmembrane protein required for proteolytic cleavage of Rim101/PacC transcription factors which are activated by C-terminal proteolytic processing. Rim101/PacC family proteins play a key role in pH-dependent responses and PalH has been implicated as a pH sensor [].
Probab=69.02 E-value=1.4e+02 Score=30.64 Aligned_cols=27 Identities=19% Similarity=0.085 Sum_probs=16.9
Q ss_pred eEeeeccccchhhcHHhHHHHHHHHHH
Q 013595 375 VFALKTIAAYKYQWVSNAAEELASLAF 401 (439)
Q Consensus 375 v~~~~~~~~w~~~W~~~~~~e~~~~~f 401 (439)
.+.+..+.+|...|....-|-..-.+.
T Consensus 282 ffI~dis~~~v~~w~~~~~~~~~~~~t 308 (348)
T PF08733_consen 282 FFILDISNWWVSGWSEYFRWVLYVAAT 308 (348)
T ss_pred hheeEccchhhhhHHHHHHHHHHHHHh
Confidence 345566688888887766655433333
No 9
>PRK11715 inner membrane protein; Provisional
Probab=52.03 E-value=1.1e+02 Score=32.56 Aligned_cols=54 Identities=11% Similarity=0.170 Sum_probs=28.2
Q ss_pred EEEEEEEecCCCCCCccCccCccchHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHH
Q 013595 151 VKTEVYNLDRDGSRDYLSAGLTQLPSLFFFFSVLYIGFFGIWIYICLTNKRSVHRIHLVMGIL 213 (439)
Q Consensus 151 ~~v~~~n~N~~G~~~yLsa~~~plp~~Y~~~~i~y~~l~~~W~~~~~k~r~~v~~Ih~~i~~v 213 (439)
..+++. +|- +.|.-.+..- =|++++++-.. ++++++-.. .+..++++||.+-++
T Consensus 286 ~~V~~~--~PV--d~Y~~~~RA~---KYgiLFI~LTF-~~fFlfE~~-~~~~iHpiQYlLVGl 339 (436)
T PRK11715 286 FGVSLI--DPV--DQYQKTERAV---KYAILFIALTF-AAFFLFELL-KKLRIHPVQYLLVGL 339 (436)
T ss_pred eEEEEe--ccc--cHHHHHHHHH---hHHHHHHHHHH-HHHHHHHHh-cCceecHHHHHHHHH
Confidence 345555 563 4454444333 35555544322 233343333 466799999997543
No 10
>PF09437 Pombe_5TM: Pombe specific 5TM protein; InterPro: IPR018291 This entry represents a group of proteins containing five transmembrane regions. These proteins are found exclusively in Schizosaccharomyces pombe (Fission yeast).
Probab=50.97 E-value=6.6 Score=36.23 Aligned_cols=134 Identities=15% Similarity=0.301 Sum_probs=81.1
Q ss_pred eEEEecCCCeeEEEEEEcC-CCceeEEE--E-EE--EEEEecCCCCCCccCccCccchHHHHHHHHHHHHHHHHHHHHHH
Q 013595 124 QSYPVTAPNEYSLFFANCA-PETQVSMN--V-KT--EVYNLDRDGSRDYLSAGLTQLPSLFFFFSVLYIGFFGIWIYICL 197 (439)
Q Consensus 124 ~~~~I~~~g~Y~l~~~~C~-~~~~~~~~--~-~v--~~~n~N~~G~~~yLsa~~~plp~~Y~~~~i~y~~l~~~W~~~~~ 197 (439)
.+.-|+++|.||+...--. ++.+..++ | .+ +-.|-+.-|..+|+|..|.+-.. .+.-+|++-|.
T Consensus 36 ~~i~I~~T~sYCvAar~mtmdgaefnldlmgysvsedqinndeigiwnyisvaemggvl----------lflsywiwtcl 105 (256)
T PF09437_consen 36 KTILINETGSYCVAARPMTMDGAEFNLDLMGYSVSEDQINNDEIGIWNYISVAEMGGVL----------LFLSYWIWTCL 105 (256)
T ss_pred EEEEecCccceEEEEeeeecccceecccccccccchhhcCccceeeeeEEEhhhcCcee----------ehhHHHHHHHH
Confidence 4445788999998765432 12111111 1 11 11121222567788888876432 23458999999
Q ss_pred HhcchhhhHHHHHHHHHHHHHHHHHH-H-HHHhHhhhhcCCc----cchHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 013595 198 TNKRSVHRIHLVMGILLIMKALNLIC-A-AEDKHYVKVTGTP----HGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKP 271 (439)
Q Consensus 198 k~r~~v~~Ih~~i~~vi~l~~l~~~~-~-~~~y~~in~~G~~----~~w~v~~~i~~~~k~~l~f~lilLI~~Gwg~vkp 271 (439)
...+-++|-|+.+...+++.++.-.. . ...|.+ |.. ...--.+.|..++|.-+-++.++.-++|.|+.|.
T Consensus 106 hfskiifpaqkviClYIflfalnqtlqecieeyvF----ssecikyrqFysvyeiidFlRTnfyrlfviycalgfgitRT 181 (256)
T PF09437_consen 106 HFSKIIFPAQKVICLYIFLFALNQTLQECIEEYVF----SSECIKYRQFYSVYEIIDFLRTNFYRLFVIYCALGFGITRT 181 (256)
T ss_pred hHhheecccceEEEEEeehhhcChhHHHHHHHhee----eeEEEEecccccHHHHHHHHHhhhhhhheeeecccccceee
Confidence 88889999999887777665543211 1 111111 111 1122235688899999999999999999999884
No 11
>smart00805 AGTRAP Angiotensin II, type I receptor-associated protein. This family consists of several angiotensin II, type I receptor-associated protein (AGTRAP) sequences. AGTRAP is known to interact specifically with the C-terminal cytoplasmic region of the angiotensin II type 1 (AT(1)) receptor to regulate different aspects of AT(1) receptor physiology. The function of this family is unclear.
Probab=47.87 E-value=1.3e+02 Score=27.49 Aligned_cols=82 Identities=15% Similarity=0.241 Sum_probs=56.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCccchHHHHHHHHHHHHH
Q 013595 174 LPSLFFFFSVLYIGFFGIWIYICLTNKRSVHRIHLVMGILLIMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVV 253 (439)
Q Consensus 174 lp~~Y~~~~i~y~~l~~~W~~~~~k~r~~v~~Ih~~i~~vi~l~~l~~~~~~~~y~~in~~G~~~~w~v~~~i~~~~k~~ 253 (439)
+|.-|.+--+.|++++ +|.. ..|+++-.+|-........-+..++.-..+|...|..-+ .+|.+.+.|++++-+=
T Consensus 28 ~p~aY~f~Nf~~l~~~-~WAi---~~kdSidaV~m~L~~~~~sI~~DIi~i~i~fp~~~~~d~-~~fs~gmaIlnLiLrP 102 (159)
T smart00805 28 FSGAYAWANFTILALG-VWAV---AQRDSIDAIQMFLGGLLATIFLDILLISIFYTEVPLRDT-GRFGVGMAILSLLLKP 102 (159)
T ss_pred ccchhHHHhHHHHHHH-HHHH---HhccchHHHHHHHHHHHHHHHHHHHHheeeccccccccc-chhhHHHHHHHHHHHH
Confidence 4555666666665544 5654 457788899988877777777777777777777653222 3688888888888777
Q ss_pred HHHHHHH
Q 013595 254 LLFTVIV 260 (439)
Q Consensus 254 l~f~lil 260 (439)
++.+++-
T Consensus 103 ~S~~lly 109 (159)
T smart00805 103 LSCCLVY 109 (159)
T ss_pred HHHHHHH
Confidence 7777653
No 12
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=41.42 E-value=46 Score=23.96 Aligned_cols=31 Identities=29% Similarity=0.488 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhccCCCCCceeeccchhHHHHHhhcccc
Q 013595 398 SLAFYIVIFYMFRPLETNEYFVLDEEEEEAAEQALRDE 435 (439)
Q Consensus 398 ~~~ffv~i~~~fRP~~~n~y~~l~~de~~~~~~~~~~~ 435 (439)
..+|..++.|.|||..+. +=||++..+++||
T Consensus 19 ~~~F~gi~~w~~~~~~k~-------~~e~aa~lpl~dd 49 (49)
T PF05545_consen 19 FVFFIGIVIWAYRPRNKK-------RFEEAANLPLDDD 49 (49)
T ss_pred HHHHHHHHHHHHcccchh-------hHHHHHccCccCC
Confidence 334445688889998532 2345555566654
No 13
>PF13491 DUF4117: Domain of unknown function (DUF4117)
Probab=39.64 E-value=2.8e+02 Score=24.74 Aligned_cols=50 Identities=20% Similarity=0.265 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHH
Q 013595 176 SLFFFFSVLYIGFFGIWIYICLTNKRSVHRIHLVMGILLIMKALNLICAA 225 (439)
Q Consensus 176 ~~Y~~~~i~y~~l~~~W~~~~~k~r~~v~~Ih~~i~~vi~l~~l~~~~~~ 225 (439)
...+..+.+..++.+.|.+.+.++|+...+...+...++.+-.+..+++.
T Consensus 60 ~~fG~~a~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l 109 (171)
T PF13491_consen 60 QLFGLGAYLLPLLLIVWGIRLFRRRSLRRRIRRWLGLLLLLLSLSGLLSL 109 (171)
T ss_pred hccchHHHHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888888888888887666677777666666666555543
No 14
>COG2322 Predicted membrane protein [Function unknown]
Probab=37.43 E-value=3.4e+02 Score=25.17 Aligned_cols=49 Identities=22% Similarity=0.348 Sum_probs=27.8
Q ss_pred hhcCCc-cchHHH-HHHHHHHHHHHHHHHHHhhhccccccccccccch-hhhhhhhH
Q 013595 232 KVTGTP-HGWDVL-FYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQERE-KKVLMIVI 285 (439)
Q Consensus 232 n~~G~~-~~w~v~-~~i~~~~k~~l~f~lilLI~~Gwg~vkp~L~~~~-kkv~~ivi 285 (439)
..-|.+ .+|.+- .-..++.-++++++++ -.||-.+|-. +++ +|-.|+..
T Consensus 31 ~P~g~~~~~~~v~i~p~lnai~~~~s~~~l---lag~~~Ikrg--~i~~Hk~aMltA 82 (177)
T COG2322 31 SPAGPQADAFNVEILPMLNAIFNSLSFIFL---LAGWRLIKRG--NIEKHKRAMLTA 82 (177)
T ss_pred CCCCCCCCccCchhhhhHHHHHHHHHHHHH---HHHHHHHHhc--cHHHHHHHHHHH
Confidence 345532 345552 3456666677766654 4689888844 444 35555554
No 15
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=36.29 E-value=1.7e+02 Score=31.08 Aligned_cols=34 Identities=15% Similarity=0.234 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHH
Q 013595 178 FFFFSVLYIGFFGIWIYICLTNKRSVHRIHLVMGIL 213 (439)
Q Consensus 178 Y~~~~i~y~~l~~~W~~~~~k~r~~v~~Ih~~i~~v 213 (439)
|+++++.-..+ +++++-.. .|..++++||.+-++
T Consensus 300 YgiLFI~LTF~-~fflfE~~-~~~~iHpiQY~LVGl 333 (430)
T PF06123_consen 300 YGILFIGLTFL-AFFLFELL-SKLRIHPIQYLLVGL 333 (430)
T ss_pred HHHHHHHHHHH-HHHHHHHH-hcCcccHHHHHHHHH
Confidence 55555543332 23333333 466899999997544
No 16
>PF06396 AGTRAP: Angiotensin II, type I receptor-associated protein (AGTRAP); InterPro: IPR009436 This family consists of several angiotensin II, type I receptor-associated protein (AGTRAP) sequences. AGTRAP is known to interact specifically with the C-terminal cytoplasmic region of the angiotensin II type 1 (AT(1)) receptor to regulate different aspects of AT(1) receptor physiology. The function of this family is unclear.
Probab=30.94 E-value=2.1e+02 Score=26.38 Aligned_cols=82 Identities=13% Similarity=0.362 Sum_probs=49.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCccchHHHHHHHHHHHHH
Q 013595 174 LPSLFFFFSVLYIGFFGIWIYICLTNKRSVHRIHLVMGILLIMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVV 253 (439)
Q Consensus 174 lp~~Y~~~~i~y~~l~~~W~~~~~k~r~~v~~Ih~~i~~vi~l~~l~~~~~~~~y~~in~~G~~~~w~v~~~i~~~~k~~ 253 (439)
+|.-|.+--+.++++ .+|.. ..|+++-.+|-++.+.++.-++..+.-..+|...+..+. ..|.....|++++-+=
T Consensus 28 ~p~sY~f~Nf~~l~~-gvWAi---~~~dSidav~~~l~~~~~sil~Dii~i~vyf~~~~~~~~-~~Fs~~maIinLllKP 102 (162)
T PF06396_consen 28 LPGSYLFYNFLFLAL-GVWAI---HQRDSIDAVQMALVGLVFSILFDIIHIGVYFPSMNLSDT-DRFSAGMAIINLLLKP 102 (162)
T ss_pred CCchhHHHHHHHHHH-HHHHH---hccCchHHHHHHHHHHHHHHHHHHheeEEeccccccccc-chhhHHHHHHHHHHHH
Confidence 344455555554443 35554 467788999998887776666666665656654332222 4577776777776666
Q ss_pred HHHHHHH
Q 013595 254 LLFTVIV 260 (439)
Q Consensus 254 l~f~lil 260 (439)
++..++.
T Consensus 103 ~s~~~l~ 109 (162)
T PF06396_consen 103 ISCFFLY 109 (162)
T ss_pred HHHHHHH
Confidence 5555443
No 17
>PF04875 DUF645: Protein of unknown function, DUF645; InterPro: IPR006959 This family contains uncharacterised proteins from Vibrio cholerae.
Probab=30.28 E-value=64 Score=24.38 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=27.6
Q ss_pred eeccccCCCCcEEEEEEEEeEeecCCCCCCCCCCeeeEEEecc
Q 013595 39 LFEKFGFTHPGHVTISVSSVSVASSSAAPNPNPSRLGFFLLSE 81 (439)
Q Consensus 39 ~~~~FGF~~gG~~~v~v~~~~~~~~~~~~~~~~~~~Gf~L~~~ 81 (439)
.-.+|||.+|+.+.+..-+++...+.+ ..+.+.+-|+..++
T Consensus 5 q~~kf~FtKg~IIA~i~lslsrtlnrG--QLnLdRFeFW~~ts 45 (59)
T PF04875_consen 5 QHGKFGFTKGCIIAVIWLSLSRTLNRG--QLNLDRFEFWQPTS 45 (59)
T ss_pred cccccccccceEEEEEEEeeecccccC--CcCcceeeccCchh
Confidence 347899999999999997766543322 23345555776553
No 18
>COG4452 CreD Inner membrane protein involved in colicin E2 resistance [Defense mechanisms]
Probab=29.43 E-value=2.3e+02 Score=29.64 Aligned_cols=16 Identities=13% Similarity=0.227 Sum_probs=12.3
Q ss_pred HhcchhhhHHHHHHHH
Q 013595 198 TNKRSVHRIHLVMGIL 213 (439)
Q Consensus 198 k~r~~v~~Ih~~i~~v 213 (439)
..++.++++||....+
T Consensus 318 lt~~~~Hp~QY~LVGl 333 (443)
T COG4452 318 LTGQRLHPMQYLLVGL 333 (443)
T ss_pred hcccccchHHHHHHHH
Confidence 4677899999997543
No 19
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=28.92 E-value=95 Score=22.34 Aligned_cols=33 Identities=30% Similarity=0.536 Sum_probs=22.4
Q ss_pred HHHHhhhh--chHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013595 336 SLRETSKT--DGKAARNLAKLTLFRQFYIVVIGYLYF 370 (439)
Q Consensus 336 ~L~~~s~t--d~k~~~n~~KL~lfr~f~~~vv~yiyf 370 (439)
.+|++|.. ..++++|++ ++|-+|..+++|.+..
T Consensus 11 airras~ie~~~qar~~lq--~lfvnf~lilicllli 45 (52)
T TIGR01294 11 AIRRASTIEMPQQARQNLQ--NLFINFCLILICLLLI 45 (52)
T ss_pred HHHHHHhccCCHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 45666644 456777764 5789999988876443
No 20
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=28.61 E-value=3.8e+02 Score=22.97 Aligned_cols=86 Identities=16% Similarity=0.347 Sum_probs=49.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCccchHHHHHHHHHHH
Q 013595 172 TQLPSLFFFFSVLYIGFFGIWIYICLTNKRSVHRIHLVMGILLIMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIR 251 (439)
Q Consensus 172 ~plp~~Y~~~~i~y~~l~~~W~~~~~k~r~~v~~Ih~~i~~vi~l~~l~~~~~~~~y~~in~~G~~~~w~v~~~i~~~~k 251 (439)
.+-++-|.+-+++-.++.++=.+....+ ..+-...+.+++.+..+..+.+..++-.+|.... ..|++...+|..
T Consensus 12 hgs~k~yviGFiLSliLT~i~F~lv~~~---~~~~~~~~~~i~~lA~vQi~VqL~~FLHl~~~~~-~~wn~~al~Ft~-- 85 (109)
T PRK10582 12 HGSVKTYMTGFILSIILTVIPFWMVMTG---AASPAVILGTILAMAVVQILVHLVCFLHMNTKSD-EGWNMTAFVFTV-- 85 (109)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHc---cCChhHHHHHHHHHHHHHHHHHHHHHhcccCCcc-cchHHHHHHHHH--
Confidence 4566677655555555444333322221 3344444556666777888888888888886544 479887555542
Q ss_pred HHHHHHHHHhhhccc
Q 013595 252 VVLLFTVIVLIGTGW 266 (439)
Q Consensus 252 ~~l~f~lilLI~~Gw 266 (439)
..++++++|+=|
T Consensus 86 ---~i~~iiv~GSlW 97 (109)
T PRK10582 86 ---LIIAILVVGSIW 97 (109)
T ss_pred ---HHHHHHHHHHHH
Confidence 344455555534
No 21
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=28.29 E-value=4.6e+02 Score=25.19 Aligned_cols=67 Identities=18% Similarity=0.278 Sum_probs=38.8
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHH--hcchhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCc
Q 013595 171 LTQLPSLFFFFSVLYIGFFGIWIYICLT--NKRSVHRIHLVMGILLIMKALNLICAAEDKHYVKVTGTP 237 (439)
Q Consensus 171 ~~plp~~Y~~~~i~y~~l~~~W~~~~~k--~r~~v~~Ih~~i~~vi~l~~l~~~~~~~~y~~in~~G~~ 237 (439)
+...-|++++...+++..-++-++...+ +|+..-.+|..+-++.+...+-=+....++|..++.|.|
T Consensus 23 ~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~ 91 (214)
T cd08764 23 QFNWHPLLMVLGLIFLYGNSILVYRVFRNTRKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIP 91 (214)
T ss_pred eEeecHHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 4556677777777777766666666544 334455688887655544444333333445543333765
No 22
>PRK10263 DNA translocase FtsK; Provisional
Probab=28.14 E-value=3.1e+02 Score=33.40 Aligned_cols=26 Identities=4% Similarity=-0.147 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013595 175 PSLFFFFSVLYIGFFGIWIYICLTNK 200 (439)
Q Consensus 175 p~~Y~~~~i~y~~l~~~W~~~~~k~r 200 (439)
..++++++.+..++++++.+.++++|
T Consensus 76 ~~LFGl~AYLLP~LL~~~a~~l~R~r 101 (1355)
T PRK10263 76 FFIFGVMAYTIPVIIVGGCWFAWRHQ 101 (1355)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhcc
Confidence 33555555555444444555555544
No 23
>cd00930 Cyt_c_Oxidase_VIII Cytochrome oxidase c subunit VIII. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIII is the smallest of the nuclear-encoded subunits. It exists in muscle-specific and non-muscle-specific isoforms that are differently expressed in different species, suggesting species-specific regulation of energy metabolism.
Probab=25.76 E-value=84 Score=22.42 Aligned_cols=20 Identities=15% Similarity=0.501 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013595 320 IICCCAIIFPIVWSIRSLRE 339 (439)
Q Consensus 320 ~~~~~ailf~i~wsi~~L~~ 339 (439)
.+|+.+++.|-.|.+.||++
T Consensus 20 ~~~f~~~L~p~gWVLshL~~ 39 (43)
T cd00930 20 SVFFTTFLLPAGWVLSHLEN 39 (43)
T ss_pred HHHHHHHHhhHHHHHHHHHH
Confidence 35777888899999999963
No 24
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=25.60 E-value=78 Score=26.12 Aligned_cols=26 Identities=27% Similarity=0.603 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcch
Q 013595 177 LFFFFSVLYIGFFGIWIYICLTNKRS 202 (439)
Q Consensus 177 ~Y~~~~i~y~~l~~~W~~~~~k~r~~ 202 (439)
-+++.+++|..+.+.|...|.|+||.
T Consensus 36 ~~lvI~~iFil~VilwfvCC~kRkrs 61 (94)
T PF05393_consen 36 WFLVICGIFILLVILWFVCCKKRKRS 61 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 37888999999999999988776654
No 25
>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=22.27 E-value=4e+02 Score=28.88 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 013595 186 IGFFGIWIYICLTNKRSVHRIHLVMGILLIMKALNLICAAEDKH 229 (439)
Q Consensus 186 ~~l~~~W~~~~~k~r~~v~~Ih~~i~~vi~l~~l~~~~~~~~y~ 229 (439)
+.+...|...+.+.+.++-+|+.+=++++++.++-++.+|..|-
T Consensus 143 iLlig~WAlf~R~~~a~lPRif~fRa~ll~Lvfl~~~syWLFY~ 186 (505)
T PF06638_consen 143 ILLIGTWALFFRRPRADLPRIFVFRALLLVLVFLFLFSYWLFYG 186 (505)
T ss_pred HHHHHHHHHhcCcccCCCchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566799988888889999999988888888888877666664
No 26
>PF03381 CDC50: LEM3 (ligand-effect modulator 3) family / CDC50 family; InterPro: IPR005045 Members of this family have no known function. They have predicted transmembrane helices.; GO: 0016020 membrane
Probab=21.23 E-value=3.4e+02 Score=26.98 Aligned_cols=72 Identities=13% Similarity=0.164 Sum_probs=46.2
Q ss_pred CcceeEEEec-----CCCeeEEEEEEcCCCceeEEEE--EEEEEEecCCCCCCccCccCccchHHHHHHHHHHHHHHHHH
Q 013595 120 SRFEQSYPVT-----APNEYSLFFANCAPETQVSMNV--KTEVYNLDRDGSRDYLSAGLTQLPSLFFFFSVLYIGFFGIW 192 (439)
Q Consensus 120 ~~~~~~~~I~-----~~g~Y~l~~~~C~~~~~~~~~~--~v~~~n~N~~G~~~yLsa~~~plp~~Y~~~~i~y~~l~~~W 192 (439)
..|.+-|-+- ++|.|.+.+.|=-|. ..+.| .+.+. ++ +.+.+....+..+|+++++++++++++-
T Consensus 192 p~FrKLYg~i~~~~L~~G~y~i~I~nnypv--~~f~G~K~ivls--t~----s~~Ggkn~~Lgi~ylvvg~i~~v~~i~~ 263 (278)
T PF03381_consen 192 PTFRKLYGRIDNDDLPAGNYTIDITNNYPV--SSFGGKKSIVLS--TT----SWFGGKNYFLGIAYLVVGGICLVLAIIF 263 (278)
T ss_pred CCeeEeEeeeccCCCCCceEEEEEEEeecc--cccCcEEEEEEE--ec----cccCccccHHHHHHHHHHHHHHHHHHHH
Confidence 3455555432 468898888763332 23334 23333 22 3667777889999999999998888877
Q ss_pred HHHHHHh
Q 013595 193 IYICLTN 199 (439)
Q Consensus 193 ~~~~~k~ 199 (439)
+...+.+
T Consensus 264 ~~~~~~~ 270 (278)
T PF03381_consen 264 LIIHYFK 270 (278)
T ss_pred HHHHHhC
Confidence 7665543
No 27
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=21.20 E-value=1.7e+02 Score=26.02 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=32.2
Q ss_pred eeEEEec-CCCeeEEEEEEcCCCceeEEEEEEEEEEecCCC-CCCccCc
Q 013595 123 EQSYPVT-APNEYSLFFANCAPETQVSMNVKTEVYNLDRDG-SRDYLSA 169 (439)
Q Consensus 123 ~~~~~I~-~~g~Y~l~~~~C~~~~~~~~~~~v~~~n~N~~G-~~~yLsa 169 (439)
+..|.++ ++|.|++..... +.+...-|+++.+.-.+.| -+++|-+
T Consensus 46 ~G~Ys~~~epG~Y~V~l~~~--g~~~~~vG~I~V~~dS~pGTLN~fL~~ 92 (134)
T PF08400_consen 46 AGEYSFDVEPGVYRVTLKVE--GRPPVYVGDITVYEDSKPGTLNDFLTA 92 (134)
T ss_pred CceEEEEecCCeEEEEEEEC--CCCceeEEEEEEecCCCCCcHHHHhhc
Confidence 4666664 789999988663 4456677999999766666 5567754
No 28
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=21.15 E-value=2e+02 Score=20.73 Aligned_cols=32 Identities=31% Similarity=0.540 Sum_probs=21.2
Q ss_pred HHHHhhhh--chHHHHHHHHHHHHHHHHHHHHHHhh
Q 013595 336 SLRETSKT--DGKAARNLAKLTLFRQFYIVVIGYLY 369 (439)
Q Consensus 336 ~L~~~s~t--d~k~~~n~~KL~lfr~f~~~vv~yiy 369 (439)
.+|++|.. ..++++|++ ++|-+|..+++|.+.
T Consensus 11 airrastiev~~qa~qnlq--elfvnfcliliclll 44 (52)
T PF04272_consen 11 AIRRASTIEVPQQARQNLQ--ELFVNFCLILICLLL 44 (52)
T ss_dssp HHHHHHTSSSCHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 35565544 346677664 578999998887644
No 29
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=21.08 E-value=2.5e+02 Score=18.95 Aligned_cols=24 Identities=17% Similarity=0.429 Sum_probs=17.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHH
Q 013595 200 KRSVHRIHLVMGILLIMKALNLIC 223 (439)
Q Consensus 200 r~~v~~Ih~~i~~vi~l~~l~~~~ 223 (439)
||...++|.|+++.+.+.++-..+
T Consensus 1 rr~~~~~H~W~Gl~~g~~l~~~~~ 24 (37)
T PF13706_consen 1 RRILRKLHRWLGLILGLLLFVIFL 24 (37)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 566789999999887666554443
Done!