Query 013595
Match_columns 439
No_of_seqs 178 out of 438
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 13:31:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013595.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013595hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eff_K Voltage-gated potassium 27.4 2E+02 0.007 23.6 7.7 21 252-272 43-63 (139)
2 1fjk_A Cardiac phospholamban; 22.5 93 0.0032 21.4 3.5 32 336-369 11-44 (52)
3 4ea3_A Fusion protein of nocic 18.3 6.3E+02 0.022 24.1 16.5 39 329-367 308-346 (434)
4 3izc_W 60S ribosomal protein R 14.2 37 0.0013 28.4 -0.0 11 417-427 107-117 (121)
5 1nqj_A Class 1 collagenase; be 13.2 3.4E+02 0.012 22.3 5.7 64 42-141 44-107 (119)
6 2kix_A BM2 protein; channel, t 11.6 3E+02 0.01 17.0 4.0 13 327-339 18-30 (33)
7 1yew_C Particulate methane mon 11.0 1.7E+02 0.006 27.6 3.5 38 378-415 78-118 (289)
8 1v54_M VIIIB, IX, cytochrome C 10.4 2E+02 0.0069 19.8 2.8 19 321-339 21-39 (46)
9 1vf5_F Protein PET M; photosyn 10.3 94 0.0032 20.3 1.0 25 250-274 6-30 (35)
10 1q90_M Cytochrome B6F complex 10.1 1.1E+02 0.0039 20.4 1.4 21 249-269 6-26 (39)
No 1
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=27.42 E-value=2e+02 Score=23.60 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhhccccccccc
Q 013595 252 VVLLFTVIVLIGTGWSFLKPF 272 (439)
Q Consensus 252 ~~l~f~lilLI~~Gwg~vkp~ 272 (439)
.++-|..+-+-..|||=+.|.
T Consensus 43 ~a~yf~~~T~tTvGyGd~~P~ 63 (139)
T 3eff_K 43 RALWWSVETATTVGYGDLYPV 63 (139)
T ss_dssp HHHHHHHHHHTTCCCSSSCCC
T ss_pred HHHHHHheeeecccCCCCcCC
Confidence 456677788889999998884
No 2
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=22.50 E-value=93 Score=21.40 Aligned_cols=32 Identities=31% Similarity=0.509 Sum_probs=21.3
Q ss_pred HHHHhhhh--chHHHHHHHHHHHHHHHHHHHHHHhh
Q 013595 336 SLRETSKT--DGKAARNLAKLTLFRQFYIVVIGYLY 369 (439)
Q Consensus 336 ~L~~~s~t--d~k~~~n~~KL~lfr~f~~~vv~yiy 369 (439)
.+|++|.. ..++++|++ ++|-+|..+++|.+.
T Consensus 11 airras~ie~~~qarqnlq--elfvnfcliliclll 44 (52)
T 1fjk_A 11 AIRRASTIEMPQQARQNLQ--NLFINFCLILIFLLL 44 (52)
T ss_dssp HHHHHHSSSSHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 45666644 346667664 678999988877644
No 3
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=18.34 E-value=6.3e+02 Score=24.11 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 013595 329 PIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGY 367 (439)
Q Consensus 329 ~i~wsi~~L~~~s~td~k~~~n~~KL~lfr~f~~~vv~y 367 (439)
....+++.+++..+..+..+++..+.+..|....+++.|
T Consensus 308 ~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vv~~F 346 (434)
T 4ea3_A 308 CYSLMIRRLRGVRLLSGSREKDRNLRRITRLVLVVVAVF 346 (434)
T ss_dssp HHHHHHHHHTTCSSCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccchhhHHHHhHHHHHHHHHHHHH
Confidence 344566777653322222222223445555555554444
No 4
>3izc_W 60S ribosomal protein RPL22 (L22E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_W 3u5e_U 3u5i_U 4b6a_U
Probab=14.17 E-value=37 Score=28.42 Aligned_cols=11 Identities=27% Similarity=0.712 Sum_probs=2.5
Q ss_pred eeeccchhHHH
Q 013595 417 YFVLDEEEEEA 427 (439)
Q Consensus 417 y~~l~~de~~~ 427 (439)
|+++.+||||+
T Consensus 107 yf~I~~de~ee 117 (121)
T 3izc_W 107 FYQVTPEEDEE 117 (121)
T ss_dssp CCCC-------
T ss_pred EEeeCCCcccc
Confidence 56665554443
No 5
>1nqj_A Class 1 collagenase; beta sandwich, metalloprotease, collagen-binding domain, lithium, chlorine, hydrolase; 1.00A {Clostridium histolyticum} SCOP: b.23.2.1 PDB: 2o8o_A 1nqd_A
Probab=13.15 E-value=3.4e+02 Score=22.27 Aligned_cols=64 Identities=14% Similarity=0.207 Sum_probs=35.4
Q ss_pred cccCCCCcEEEEEEEEeEeecCCCCCCCCCCeeeEEEeccccHHHHHHHhccCCCcccccccceeeEEEeecCCCCCCCc
Q 013595 42 KFGFTHPGHVTISVSSVSVASSSAAPNPNPSRLGFFLLSEESLLQVLVEIQQNPNFCVLDSHYILRLFNFRELSPPPHSR 121 (439)
Q Consensus 42 ~FGF~~gG~~~v~v~~~~~~~~~~~~~~~~~~~Gf~L~~~~~~~~~~~~~~~~~~~C~l~~~~~~~~~~f~~~~~~~~~~ 121 (439)
+|=..+.|.++|++.+ . ....+.+.|+..++.... ..+..+ .+ +.
T Consensus 44 ~f~v~~~g~v~I~l~~-----~------~~~~~~w~ly~~~dl~ny--------v~y~~~-------------~g---n~ 88 (119)
T 1nqj_A 44 SFEVKEEGEVNIELDK-----K------DEFGVTWTLHPESNINDR--------ITYGQV-------------DG---NK 88 (119)
T ss_dssp EEEESSCEEEEEEEEE-----S------SSSEEEEEEEECC----C--------CEECEE-------------ET---TE
T ss_pred EEECCCCCeEEEEEEe-----C------CCCCEEEEEEccCCCccc--------eEEeec-------------CC---Cc
Confidence 3444688999999975 1 124577888875543221 111110 01 22
Q ss_pred ceeEEEecCCCeeEEEEEEc
Q 013595 122 FEQSYPVTAPNEYSLFFANC 141 (439)
Q Consensus 122 ~~~~~~I~~~g~Y~l~~~~C 141 (439)
...+|.+. +|.|++....+
T Consensus 89 ~~~~~~~~-pGkYYl~Vy~y 107 (119)
T 1nqj_A 89 VSNKVKLR-PGKYYLLVYKY 107 (119)
T ss_dssp EEEEEEEC-SEEEEEEEEEE
T ss_pred EEEEEEcC-CcEEEEEEEEe
Confidence 34566654 89999988876
No 6
>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus}
Probab=11.57 E-value=3e+02 Score=17.03 Aligned_cols=13 Identities=31% Similarity=0.705 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHH
Q 013595 327 IFPIVWSIRSLRE 339 (439)
Q Consensus 327 lf~i~wsi~~L~~ 339 (439)
+-++.|+|.||+.
T Consensus 18 lhf~awtighlnq 30 (33)
T 2kix_A 18 LHFIAWTIGHLNQ 30 (33)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3478999999963
No 7
>1yew_C Particulate methane monooxygenase subunit C2; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_C
Probab=10.96 E-value=1.7e+02 Score=27.65 Aligned_cols=38 Identities=18% Similarity=0.398 Sum_probs=27.3
Q ss_pred eecccc-chhhcHHhHHHHH--HHHHHHHHHHhhccCCCCC
Q 013595 378 LKTIAA-YKYQWVSNAAEEL--ASLAFYIVIFYMFRPLETN 415 (439)
Q Consensus 378 ~~~~~~-w~~~W~~~~~~e~--~~~~ffv~i~~~fRP~~~n 415 (439)
+.+..| ++.+|+.-...|+ ...+..+.-||+|+-..+|
T Consensus 78 LDS~~PeF~~YWM~ll~~e~~le~~~~~~l~g~lWkTRdr~ 118 (289)
T 1yew_C 78 LDSFAPEFETYWMNFLYTEIVLEIVTASILWGYLWKTRDRN 118 (289)
T ss_dssp SCTTSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeecccc
Confidence 344444 8999999888884 3455567889999966666
No 8
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=10.41 E-value=2e+02 Score=19.83 Aligned_cols=19 Identities=16% Similarity=0.515 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013595 321 ICCCAIIFPIVWSIRSLRE 339 (439)
Q Consensus 321 ~~~~ailf~i~wsi~~L~~ 339 (439)
+|..+++.|-.|.+.||++
T Consensus 21 v~f~~~L~PagWVLshL~~ 39 (46)
T 1v54_M 21 VTFLSFLLPAGWVLYHLDN 39 (46)
T ss_dssp HHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHhhHHHHHHHHHH
Confidence 4556677799999999964
No 9
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=10.26 E-value=94 Score=20.25 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhhhccccccccccc
Q 013595 250 IRVVLLFTVIVLIGTGWSFLKPFLQ 274 (439)
Q Consensus 250 ~k~~l~f~lilLI~~Gwg~vkp~L~ 274 (439)
++.+.....+.++|..||++--+++
T Consensus 6 f~~A~i~~~LvLvGla~Gf~LLkiq 30 (35)
T 1vf5_F 6 LYAALLSFGLIFVGWGLGVLLLKIQ 30 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhheee
Confidence 4567777888899999998654443
No 10
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=10.11 E-value=1.1e+02 Score=20.35 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhcccccc
Q 013595 249 FIRVVLLFTVIVLIGTGWSFL 269 (439)
Q Consensus 249 ~~k~~l~f~lilLI~~Gwg~v 269 (439)
+++.+.....+.++|..||++
T Consensus 6 If~~A~i~~~L~LvGla~Gf~ 26 (39)
T 1q90_M 6 IAGTALTMVGMTLVGLAIGFV 26 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Done!