Query 013595
Match_columns 439
No_of_seqs 178 out of 438
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 13:31:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013595.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013595hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gg1 f.58.1.1 (G:7-296) Mal 8.7 3.9E+02 0.028 22.1 7.5 22 252-273 88-109 (290)
2 d1m56c_ f.25.1.1 (C:) Bacteria 6.7 6.3E+02 0.046 20.9 12.3 54 176-229 133-186 (265)
3 d1xoub_ a.231.1.2 (B:) EspA ch 6.6 1.7E+02 0.012 20.1 3.0 23 332-354 35-57 (84)
4 d1xu1a_ b.22.1.1 (A:) A prolif 6.6 2.2E+02 0.016 21.6 4.1 20 123-142 39-58 (137)
5 d1kxga_ b.22.1.1 (A:) Soluble 6.5 3E+02 0.022 21.0 5.0 22 123-144 41-62 (144)
6 d1v54m_ f.23.7.1 (M:) Mitochon 6.2 1.9E+02 0.014 18.0 2.8 18 321-338 21-38 (43)
7 d1bxua_ b.6.1.1 (A:) Plastocya 6.1 1.6E+02 0.011 20.7 2.7 30 123-155 61-90 (91)
8 d1wlha1 b.1.18.10 (A:547-647) 5.0 4.8E+02 0.035 17.7 5.5 23 119-141 64-86 (101)
9 d2ftxb1 d.300.1.2 (B:155-213) 4.9 1.4E+02 0.01 20.0 1.5 15 349-363 3-17 (59)
10 d1pcsa_ b.6.1.1 (A:) Plastocya 4.8 1.5E+02 0.011 21.0 1.8 30 123-155 68-97 (98)
No 1
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=8.66 E-value=3.9e+02 Score=22.15 Aligned_cols=22 Identities=9% Similarity=0.132 Sum_probs=12.1
Q ss_pred HHHHHHHHHhhhcccccccccc
Q 013595 252 VVLLFTVIVLIGTGWSFLKPFL 273 (439)
Q Consensus 252 ~~l~f~lilLI~~Gwg~vkp~L 273 (439)
.+....+++-+..+|++.|...
T Consensus 88 ~~~~~~~~ig~~~a~~l~r~~~ 109 (290)
T d2r6gg1 88 ISAIGIVALSTTCAYAFARMRF 109 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhhhhhhhHHHHHHHHHHHhhh
Confidence 3334444455667777766433
No 2
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.72 E-value=6.3e+02 Score=20.92 Aligned_cols=54 Identities=15% Similarity=0.210 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 013595 176 SLFFFFSVLYIGFFGIWIYICLTNKRSVHRIHLVMGILLIMKALNLICAAEDKH 229 (439)
Q Consensus 176 ~~Y~~~~i~y~~l~~~W~~~~~k~r~~v~~Ih~~i~~vi~l~~l~~~~~~~~y~ 229 (439)
++--...++-....+.|.....++++.-...-+.+...++++.+=+..++.+|.
T Consensus 133 ~l~nT~iLl~Ss~~~~~a~~~~~~~~~~~~~~~~L~~t~~lg~~F~~~q~~Ey~ 186 (265)
T d1m56c_ 133 PLINTLILLCSGCAATWAHHALVHENNRRDVAWGLALAIALGALFTVFQAYEYS 186 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566777788777655544444555555555666665566665554
No 3
>d1xoub_ a.231.1.2 (B:) EspA chaperone CesA {Escherichia coli [TaxId: 562]}
Probab=6.65 E-value=1.7e+02 Score=20.06 Aligned_cols=23 Identities=48% Similarity=0.541 Sum_probs=18.3
Q ss_pred HHHHHHHHhhhhchHHHHHHHHH
Q 013595 332 WSIRSLRETSKTDGKAARNLAKL 354 (439)
Q Consensus 332 wsi~~L~~~s~td~k~~~n~~KL 354 (439)
-..+.|.+-++||.+++..+.||
T Consensus 35 envn~lsekaktdpqaaeklnkl 57 (84)
T d1xoub_ 35 ESVNELSEKAKTDPQAAEKLNKL 57 (84)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Confidence 36778888899999998777665
No 4
>d1xu1a_ b.22.1.1 (A:) A proliferation-inducing ligand, APRIL {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.55 E-value=2.2e+02 Score=21.58 Aligned_cols=20 Identities=15% Similarity=-0.006 Sum_probs=14.9
Q ss_pred eeEEEecCCCeeEEEEEEcC
Q 013595 123 EQSYPVTAPNEYSLFFANCA 142 (439)
Q Consensus 123 ~~~~~I~~~g~Y~l~~~~C~ 142 (439)
+.+..|.++|+|+++-.-|-
T Consensus 39 ~g~L~V~~~G~YyVYsQV~f 58 (137)
T d1xu1a_ 39 GDIVRVWDTGIYLLYSQVLF 58 (137)
T ss_dssp TTEEEECSCEEEEEEEEEEE
T ss_pred CCEEEEccceEEEEEEEEEE
Confidence 46677888898888876663
No 5
>d1kxga_ b.22.1.1 (A:) Soluble part of TALL-1, sTALL-1 (BAFF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.48 E-value=3e+02 Score=20.98 Aligned_cols=22 Identities=9% Similarity=0.069 Sum_probs=16.7
Q ss_pred eeEEEecCCCeeEEEEEEcCCC
Q 013595 123 EQSYPVTAPNEYSLFFANCAPE 144 (439)
Q Consensus 123 ~~~~~I~~~g~Y~l~~~~C~~~ 144 (439)
+.+..|.++|.|+++-.-+-.+
T Consensus 41 ~g~L~V~~~GlYfVYsQV~F~~ 62 (144)
T d1kxga_ 41 ENKILVKETGYFFIYGQVLYTD 62 (144)
T ss_dssp TTEEEECSCEEEEEEEEEEECC
T ss_pred CCEEEEccceEEEEEEEEEEeC
Confidence 4677889999999887766433
No 6
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.21 E-value=1.9e+02 Score=18.01 Aligned_cols=18 Identities=17% Similarity=0.527 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013595 321 ICCCAIIFPIVWSIRSLR 338 (439)
Q Consensus 321 ~~~~ailf~i~wsi~~L~ 338 (439)
+|..+++.|--|++.||+
T Consensus 21 ~~f~~~L~PaGwVLshLe 38 (43)
T d1v54m_ 21 VTFLSFLLPAGWVLYHLD 38 (43)
T ss_dssp HHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHccHHHHHHHHH
Confidence 344566779999999995
No 7
>d1bxua_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]}
Probab=6.10 E-value=1.6e+02 Score=20.71 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=20.9
Q ss_pred eeEEEecCCCeeEEEEEEcCCCceeEEEEEEEE
Q 013595 123 EQSYPVTAPNEYSLFFANCAPETQVSMNVKTEV 155 (439)
Q Consensus 123 ~~~~~I~~~g~Y~l~~~~C~~~~~~~~~~~v~~ 155 (439)
+.++..+++|.|.. .|.|....-|.|.+..
T Consensus 61 ~~~~tF~~~G~y~Y---~C~~H~~~gM~G~I~V 90 (91)
T d1bxua_ 61 TFEATFSEPGTYTY---YCEPHRGAGMVGKIVV 90 (91)
T ss_dssp EEEEECCSCEEEEE---ECTTTGGGTCEEEEEE
T ss_pred CEEEEeccCceEEE---EeCCCCCCCCEEEEEE
Confidence 34556678999984 5988755557777754
No 8
>d1wlha1 b.1.18.10 (A:547-647) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}
Probab=5.04 E-value=4.8e+02 Score=17.72 Aligned_cols=23 Identities=4% Similarity=0.238 Sum_probs=17.2
Q ss_pred CCcceeEEEecCCCeeEEEEEEc
Q 013595 119 HSRFEQSYPVTAPNEYSLFFANC 141 (439)
Q Consensus 119 ~~~~~~~~~I~~~g~Y~l~~~~C 141 (439)
.+.|.-+|...+.|.|.+...-.
T Consensus 64 dGty~v~y~p~~~G~y~i~V~~~ 86 (101)
T d1wlha1 64 DGTYDVEFEPKEAGDYVINLTLD 86 (101)
T ss_dssp SSEEEEEECCCSCSEEEEEEEES
T ss_pred CCeEEEEEEeCCCccEEEEEEEC
Confidence 36677778778889998877543
No 9
>d2ftxb1 d.300.1.2 (B:155-213) Kinetochore protein Spc24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.87 E-value=1.4e+02 Score=19.97 Aligned_cols=15 Identities=33% Similarity=0.696 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHH
Q 013595 349 RNLAKLTLFRQFYIV 363 (439)
Q Consensus 349 ~n~~KL~lfr~f~~~ 363 (439)
.++-||++||.+-+.
T Consensus 3 ~~iLkLklYRSLGv~ 17 (59)
T d2ftxb1 3 ENILKLKLYRSLGVI 17 (59)
T ss_dssp HHHHHHHHHHHTTEE
T ss_pred cceeeeeehhhccEE
Confidence 356799999998753
No 10
>d1pcsa_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]}
Probab=4.83 E-value=1.5e+02 Score=21.01 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=20.2
Q ss_pred eeEEEecCCCeeEEEEEEcCCCceeEEEEEEEE
Q 013595 123 EQSYPVTAPNEYSLFFANCAPETQVSMNVKTEV 155 (439)
Q Consensus 123 ~~~~~I~~~g~Y~l~~~~C~~~~~~~~~~~v~~ 155 (439)
+.++..+++|.|.. -|.|....-|.|++..
T Consensus 68 t~~~tf~~~G~y~Y---~C~~H~~~gM~G~I~V 97 (98)
T d1pcsa_ 68 SFTSTFTEPGTYTY---YCEPHRGAGMVGKVVV 97 (98)
T ss_dssp EEEEECCSCEEEEE---ECGGGTTTTCEEEEEE
T ss_pred EEEEeccCCceEEE---EeccCCCCCCEEEEEE
Confidence 45566678999874 4977544457777653
Done!