Query 013596
Match_columns 439
No_of_seqs 237 out of 2634
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 05:27:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013596.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013596hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0133 TrpB Tryptophan syntha 100.0 4.4E-88 9.5E-93 648.6 30.9 356 68-430 1-358 (396)
2 PRK04346 tryptophan synthase s 100.0 1.1E-78 2.3E-83 621.4 39.5 361 68-434 3-363 (397)
3 PLN02618 tryptophan synthase, 100.0 4.4E-78 9.5E-83 618.0 39.6 375 60-435 3-377 (410)
4 PRK13028 tryptophan synthase s 100.0 1.6E-76 3.4E-81 606.3 39.5 366 64-435 3-368 (402)
5 KOG1395 Tryptophan synthase be 100.0 5E-74 1.1E-78 556.1 29.1 415 3-431 8-425 (477)
6 PRK13802 bifunctional indole-3 100.0 2.3E-71 5E-76 596.7 36.7 360 71-435 274-640 (695)
7 PRK13803 bifunctional phosphor 100.0 4.1E-71 8.9E-76 595.0 37.8 361 68-435 216-576 (610)
8 TIGR00263 trpB tryptophan synt 100.0 5.7E-65 1.2E-69 521.7 38.5 356 74-435 1-356 (385)
9 COG1171 IlvA Threonine dehydra 100.0 2.5E-56 5.5E-61 442.9 29.3 292 87-437 4-298 (347)
10 cd06446 Trp-synth_B Tryptophan 100.0 1.1E-51 2.3E-56 421.2 35.4 340 91-436 2-341 (365)
11 KOG1251 Serine racemase [Signa 100.0 2.4E-52 5.2E-57 388.9 23.8 285 89-435 6-293 (323)
12 PRK08526 threonine dehydratase 100.0 1.4E-50 3.1E-55 416.9 32.1 284 90-434 2-287 (403)
13 PRK12483 threonine dehydratase 100.0 6.8E-50 1.5E-54 421.4 31.6 280 110-435 25-306 (521)
14 PLN02970 serine racemase 100.0 3.9E-49 8.5E-54 397.0 32.5 287 88-436 7-295 (328)
15 PRK08198 threonine dehydratase 100.0 5.1E-49 1.1E-53 406.8 32.3 288 88-435 2-290 (404)
16 PRK08639 threonine dehydratase 100.0 2.8E-49 6.1E-54 410.2 30.2 290 89-435 6-299 (420)
17 PLN02550 threonine dehydratase 100.0 5.9E-49 1.3E-53 416.9 32.3 279 111-435 98-378 (591)
18 PRK06382 threonine dehydratase 100.0 1E-48 2.3E-53 404.4 33.0 285 90-435 7-293 (406)
19 KOG1250 Threonine/serine dehyd 100.0 2.3E-49 5.1E-54 390.6 25.5 275 115-435 59-335 (457)
20 TIGR02079 THD1 threonine dehyd 100.0 7.6E-49 1.7E-53 405.4 29.7 277 115-435 9-288 (409)
21 PRK07476 eutB threonine dehydr 100.0 2.5E-48 5.4E-53 390.3 32.0 284 91-435 2-289 (322)
22 TIGR01124 ilvA_2Cterm threonin 100.0 1.8E-48 4E-53 410.4 32.4 280 110-435 5-286 (499)
23 PRK06110 hypothetical protein; 100.0 6E-48 1.3E-52 387.6 31.3 286 89-435 2-289 (322)
24 cd06447 D-Ser-dehyd D-Serine d 100.0 1.3E-47 2.8E-52 393.2 33.5 332 73-436 5-372 (404)
25 PRK09224 threonine dehydratase 100.0 7.5E-48 1.6E-52 407.0 32.3 281 110-436 8-290 (504)
26 PRK08638 threonine dehydratase 100.0 8.9E-48 1.9E-52 387.5 31.1 287 89-435 8-295 (333)
27 PRK08813 threonine dehydratase 100.0 9.8E-48 2.1E-52 387.6 30.9 275 90-434 21-295 (349)
28 PRK06608 threonine dehydratase 100.0 1.9E-47 4E-52 385.9 31.8 286 88-435 3-291 (338)
29 TIGR02991 ectoine_eutB ectoine 100.0 1.9E-47 4E-52 383.1 31.0 284 91-435 2-289 (317)
30 PRK07048 serine/threonine dehy 100.0 2.2E-47 4.8E-52 383.3 31.1 286 89-435 5-292 (321)
31 PRK02991 D-serine dehydratase; 100.0 2.8E-47 6.1E-52 395.0 32.7 314 89-434 40-393 (441)
32 TIGR01127 ilvA_1Cterm threonin 100.0 1.6E-47 3.6E-52 392.6 29.6 267 124-435 1-268 (380)
33 TIGR02035 D_Ser_am_lyase D-ser 100.0 2.3E-46 4.9E-51 386.9 32.9 322 87-436 33-390 (431)
34 PRK08246 threonine dehydratase 100.0 1.9E-46 4.1E-51 374.8 30.6 282 89-435 4-285 (310)
35 cd06448 L-Ser-dehyd Serine deh 100.0 2.5E-46 5.4E-51 374.8 29.7 271 123-434 1-276 (316)
36 PRK06815 hypothetical protein; 100.0 5.1E-46 1.1E-50 372.8 31.1 284 92-436 4-290 (317)
37 PRK07334 threonine dehydratase 100.0 6.7E-46 1.4E-50 383.3 30.0 285 89-435 4-289 (403)
38 PLN02356 phosphateglycerate ki 100.0 1.3E-45 2.7E-50 378.8 30.3 282 115-435 46-375 (423)
39 cd01562 Thr-dehyd Threonine de 100.0 1.9E-45 4E-50 366.0 30.4 285 92-436 1-286 (304)
40 TIGR01415 trpB_rel pyridoxal-p 100.0 3.5E-45 7.5E-50 377.8 32.8 292 120-435 65-384 (419)
41 PRK08206 diaminopropionate amm 100.0 4.4E-45 9.6E-50 376.1 33.0 295 90-434 24-353 (399)
42 PLN02565 cysteine synthase 100.0 3.1E-45 6.6E-50 367.5 28.8 268 116-436 9-281 (322)
43 PRK10717 cysteine synthase A; 100.0 1E-44 2.2E-49 365.3 28.9 276 116-435 7-290 (330)
44 PLN03013 cysteine synthase 100.0 1.7E-44 3.8E-49 370.5 29.6 268 115-435 116-388 (429)
45 TIGR01747 diampropi_NH3ly diam 100.0 7.7E-44 1.7E-48 363.8 33.0 286 112-436 13-336 (376)
46 TIGR01136 cysKM cysteine synth 100.0 2.8E-44 6.1E-49 357.4 28.5 265 118-435 3-271 (299)
47 PRK11761 cysM cysteine synthas 100.0 2.7E-44 5.9E-49 357.0 27.9 260 115-435 5-268 (296)
48 PRK12391 tryptophan synthase s 100.0 5.7E-44 1.2E-48 369.3 30.8 294 121-435 75-393 (427)
49 PRK07591 threonine synthase; V 100.0 1E-43 2.3E-48 368.4 31.5 273 120-436 87-371 (421)
50 TIGR01139 cysK cysteine syntha 100.0 7.3E-44 1.6E-48 354.2 28.9 266 118-436 3-272 (298)
51 TIGR03528 2_3_DAP_am_ly diamin 100.0 2.2E-43 4.8E-48 362.7 32.3 280 115-433 35-352 (396)
52 COG0031 CysK Cysteine synthase 100.0 1.4E-43 3E-48 346.2 28.4 268 116-435 5-276 (300)
53 cd01561 CBS_like CBS_like: Thi 100.0 1.7E-43 3.8E-48 350.3 29.0 261 123-435 2-268 (291)
54 TIGR01138 cysM cysteine syntha 100.0 3.6E-43 7.8E-48 348.0 29.6 259 116-435 2-264 (290)
55 PRK08197 threonine synthase; V 100.0 3.2E-43 7E-48 362.3 29.9 271 123-436 79-361 (394)
56 PRK06381 threonine synthase; V 100.0 5.3E-43 1.1E-47 351.2 30.4 278 116-436 9-301 (319)
57 PLN00011 cysteine synthase 100.0 5E-43 1.1E-47 352.0 29.6 266 117-435 12-282 (323)
58 cd01563 Thr-synth_1 Threonine 100.0 4.8E-43 1E-47 352.1 28.6 273 119-435 19-301 (324)
59 PLN02556 cysteine synthase/L-3 100.0 5.4E-43 1.2E-47 356.6 27.4 268 115-435 52-324 (368)
60 PRK06352 threonine synthase; V 100.0 1.1E-42 2.4E-47 353.0 29.0 265 119-436 25-298 (351)
61 PRK06260 threonine synthase; V 100.0 2.3E-42 4.9E-47 356.4 29.6 273 119-436 64-348 (397)
62 PRK07409 threonine synthase; V 100.0 3.2E-42 6.8E-47 350.2 30.0 268 117-436 26-302 (353)
63 PRK06721 threonine synthase; R 100.0 8.2E-42 1.8E-46 346.9 30.8 266 119-436 25-298 (352)
64 PRK06450 threonine synthase; V 100.0 7.9E-42 1.7E-46 344.7 28.7 256 119-435 55-321 (338)
65 TIGR00260 thrC threonine synth 100.0 7.3E-42 1.6E-46 344.1 27.2 271 122-436 22-304 (328)
66 PLN02569 threonine synthase 100.0 2.5E-41 5.4E-46 354.3 30.9 273 120-435 131-418 (484)
67 TIGR01137 cysta_beta cystathio 100.0 3.1E-41 6.8E-46 353.5 29.0 274 116-436 5-284 (454)
68 PRK05638 threonine synthase; V 100.0 2E-40 4.4E-45 346.2 29.0 266 117-436 61-336 (442)
69 PF00291 PALP: Pyridoxal-phosp 100.0 7.7E-41 1.7E-45 332.0 21.8 278 116-435 1-286 (306)
70 TIGR03844 cysteate_syn cysteat 100.0 8.6E-40 1.9E-44 336.1 27.7 277 123-436 62-360 (398)
71 PRK08329 threonine synthase; V 100.0 1.6E-39 3.6E-44 329.5 28.8 251 123-436 64-324 (347)
72 cd00640 Trp-synth-beta_II Tryp 100.0 7.1E-39 1.5E-43 309.2 24.8 224 124-436 1-228 (244)
73 PRK03910 D-cysteine desulfhydr 100.0 6E-39 1.3E-43 323.5 24.6 279 116-435 9-299 (331)
74 TIGR01275 ACC_deam_rel pyridox 100.0 7.5E-39 1.6E-43 320.0 22.8 272 119-436 3-283 (311)
75 PRK12390 1-aminocyclopropane-1 100.0 7.5E-38 1.6E-42 316.3 23.9 279 119-436 12-306 (337)
76 TIGR01274 ACC_deam 1-aminocycl 100.0 5E-37 1.1E-41 310.3 26.2 279 122-436 13-305 (337)
77 cd06449 ACCD Aminocyclopropane 100.0 4.7E-37 1E-41 306.7 24.6 274 124-436 1-289 (307)
78 COG0498 ThrC Threonine synthas 100.0 8.5E-37 1.8E-41 311.9 25.8 312 74-437 21-355 (411)
79 PRK09225 threonine synthase; V 100.0 1.3E-36 2.9E-41 316.5 26.7 327 74-435 21-396 (462)
80 KOG1252 Cystathionine beta-syn 100.0 7.4E-38 1.6E-42 304.8 15.9 269 116-435 46-322 (362)
81 cd01560 Thr-synth_2 Threonine 100.0 1E-35 2.2E-40 310.0 28.5 329 74-436 20-400 (460)
82 COG1350 Predicted alternative 100.0 1.8E-35 3.9E-40 285.7 24.0 303 108-435 64-394 (432)
83 PRK14045 1-aminocyclopropane-1 100.0 5.3E-34 1.1E-38 287.3 23.1 277 115-436 14-298 (329)
84 KOG1481 Cysteine synthase [Ami 100.0 1.7E-34 3.6E-39 273.9 18.0 284 116-433 43-339 (391)
85 COG2515 Acd 1-aminocyclopropan 99.9 1E-21 2.3E-26 189.9 17.7 276 118-437 10-295 (323)
86 COG3048 DsdA D-serine dehydrat 99.9 1.3E-20 2.8E-25 181.4 21.6 283 123-433 78-395 (443)
87 PF14821 Thr_synth_N: Threonin 95.8 0.014 3.1E-07 46.7 4.3 54 76-133 22-75 (79)
88 KOG2616 Pyridoxalphosphate-dep 85.0 1.2 2.7E-05 42.3 4.3 94 319-433 57-183 (266)
89 PF00106 adh_short: short chai 80.7 19 0.00042 31.4 10.3 73 178-251 2-75 (167)
90 PRK13529 malate dehydrogenase; 80.6 89 0.0019 34.2 16.7 86 108-201 226-323 (563)
91 PTZ00317 NADP-dependent malic 80.5 60 0.0013 35.4 15.4 246 108-413 228-494 (559)
92 PLN03129 NADP-dependent malic 78.6 1.1E+02 0.0024 33.6 17.6 83 109-198 252-342 (581)
93 PF00070 Pyr_redox: Pyridine n 75.0 16 0.00035 28.4 7.2 50 182-231 4-59 (80)
94 PF00107 ADH_zinc_N: Zinc-bind 71.7 26 0.00057 29.4 8.3 32 296-329 58-89 (130)
95 PF05368 NmrA: NmrA-like famil 70.8 20 0.00044 33.6 8.1 51 179-233 1-51 (233)
96 PRK06128 oxidoreductase; Provi 68.9 58 0.0013 31.9 11.2 58 177-234 56-113 (300)
97 PF00764 Arginosuc_synth: Argi 67.3 51 0.0011 34.4 10.6 131 180-327 1-138 (388)
98 PRK07523 gluconate 5-dehydroge 65.2 90 0.002 29.4 11.4 70 177-249 11-80 (255)
99 PRK12937 short chain dehydroge 63.8 90 0.002 29.0 11.0 72 177-250 6-77 (245)
100 COG1751 Uncharacterized conser 62.1 47 0.001 30.1 7.9 75 158-233 10-90 (186)
101 PRK07109 short chain dehydroge 61.5 1E+02 0.0022 31.0 11.5 70 177-249 9-78 (334)
102 PRK12743 oxidoreductase; Provi 60.4 1E+02 0.0023 29.1 10.9 56 178-234 4-59 (256)
103 TIGR02825 B4_12hDH leukotriene 60.1 74 0.0016 31.3 10.2 49 178-232 141-189 (325)
104 cd08281 liver_ADH_like1 Zinc-d 60.0 1.6E+02 0.0035 29.8 12.8 48 178-231 194-241 (371)
105 KOG0025 Zn2+-binding dehydroge 58.8 42 0.00091 33.7 7.7 68 163-233 147-216 (354)
106 PRK08277 D-mannonate oxidoredu 58.8 1.3E+02 0.0028 28.8 11.3 56 177-234 11-66 (278)
107 PRK06182 short chain dehydroge 58.3 1.3E+02 0.0029 28.7 11.4 77 177-262 4-80 (273)
108 PRK07097 gluconate 5-dehydroge 57.7 1.2E+02 0.0027 28.7 10.9 56 177-234 11-66 (265)
109 PRK12481 2-deoxy-D-gluconate 3 57.6 1.2E+02 0.0026 28.7 10.8 70 177-251 9-78 (251)
110 PRK13394 3-hydroxybutyrate deh 57.5 1.5E+02 0.0032 27.8 11.4 56 177-234 8-63 (262)
111 PRK12939 short chain dehydroge 57.4 1.6E+02 0.0035 27.3 11.6 56 177-234 8-63 (250)
112 PRK12744 short chain dehydroge 57.0 1.3E+02 0.0029 28.3 11.0 72 177-249 9-82 (257)
113 PRK06935 2-deoxy-D-gluconate 3 56.0 1.6E+02 0.0034 27.8 11.3 72 177-252 16-87 (258)
114 PF01210 NAD_Gly3P_dh_N: NAD-d 55.9 27 0.00058 31.2 5.6 30 181-210 3-32 (157)
115 PRK12938 acetyacetyl-CoA reduc 55.8 1.5E+02 0.0033 27.5 11.1 56 177-233 4-59 (246)
116 PRK08416 7-alpha-hydroxysteroi 55.5 1.4E+02 0.0031 28.3 11.0 72 177-250 9-81 (260)
117 PRK08862 short chain dehydroge 55.3 1.6E+02 0.0035 27.6 11.1 55 177-233 6-60 (227)
118 TIGR01832 kduD 2-deoxy-D-gluco 55.2 1.6E+02 0.0035 27.4 11.2 69 177-250 6-74 (248)
119 TIGR00561 pntA NAD(P) transhyd 55.1 1.4E+02 0.0031 32.2 11.7 49 180-234 167-215 (511)
120 PRK12823 benD 1,6-dihydroxycyc 54.5 1.3E+02 0.0029 28.3 10.5 54 177-233 9-62 (260)
121 PRK06139 short chain dehydroge 54.2 1.3E+02 0.0029 30.2 10.9 71 177-250 8-78 (330)
122 PRK05866 short chain dehydroge 54.0 1.9E+02 0.0041 28.3 11.8 83 177-262 41-123 (293)
123 PRK08226 short chain dehydroge 53.9 1.6E+02 0.0034 27.8 10.9 55 176-233 6-60 (263)
124 PTZ00323 NAD+ synthase; Provis 53.2 1.8E+02 0.0038 29.2 11.4 64 171-234 41-113 (294)
125 PRK08063 enoyl-(acyl carrier p 53.1 1.8E+02 0.0039 27.0 11.1 57 177-234 5-61 (250)
126 PRK08936 glucose-1-dehydrogena 53.0 2E+02 0.0044 27.1 11.7 56 177-233 8-63 (261)
127 PRK06947 glucose-1-dehydrogena 52.7 2E+02 0.0043 26.8 11.4 57 177-234 3-59 (248)
128 PRK08589 short chain dehydroge 52.6 1.6E+02 0.0035 28.2 10.9 71 177-251 7-77 (272)
129 COG0026 PurK Phosphoribosylami 52.1 69 0.0015 33.1 8.2 32 180-211 4-35 (375)
130 PRK06077 fabG 3-ketoacyl-(acyl 51.9 1.8E+02 0.004 27.0 11.0 56 177-233 7-62 (252)
131 TIGR02415 23BDH acetoin reduct 51.8 2E+02 0.0044 26.7 11.4 71 178-251 2-72 (254)
132 PRK06114 short chain dehydroge 51.7 1.9E+02 0.0042 27.2 11.2 71 177-249 9-79 (254)
133 PRK05370 argininosuccinate syn 51.5 2.3E+02 0.0049 30.2 12.1 134 175-328 10-156 (447)
134 PRK07478 short chain dehydroge 51.3 1.6E+02 0.0035 27.7 10.5 73 177-252 7-79 (254)
135 cd08295 double_bond_reductase_ 51.3 1.1E+02 0.0025 30.2 9.9 49 177-231 153-202 (338)
136 cd08294 leukotriene_B4_DH_like 51.2 1.3E+02 0.0028 29.4 10.1 49 178-232 146-194 (329)
137 PRK13656 trans-2-enoyl-CoA red 51.1 2.9E+02 0.0063 29.0 12.8 111 152-266 14-141 (398)
138 PRK08993 2-deoxy-D-gluconate 3 50.4 2.1E+02 0.0046 26.9 11.3 54 177-234 11-64 (253)
139 PRK06194 hypothetical protein; 50.3 2.2E+02 0.0048 27.2 11.5 56 177-234 7-62 (287)
140 PF08659 KR: KR domain; Inter 49.9 2E+02 0.0043 26.0 11.8 70 179-249 3-74 (181)
141 PF02887 PK_C: Pyruvate kinase 49.8 1.1E+02 0.0024 25.7 8.1 78 165-249 6-83 (117)
142 PRK07035 short chain dehydroge 49.7 2.1E+02 0.0045 26.8 11.0 82 177-261 9-90 (252)
143 PRK05693 short chain dehydroge 49.3 2.2E+02 0.0047 27.2 11.2 51 178-234 3-53 (274)
144 PRK07454 short chain dehydroge 49.0 1.8E+02 0.0038 27.0 10.3 55 177-233 7-61 (241)
145 PRK05867 short chain dehydroge 48.9 2.2E+02 0.0047 26.7 11.0 71 177-250 10-80 (253)
146 PRK06463 fabG 3-ketoacyl-(acyl 48.9 2.1E+02 0.0045 26.9 10.9 67 177-251 8-74 (255)
147 PRK06181 short chain dehydroge 48.7 2.1E+02 0.0046 26.9 11.0 70 178-250 3-72 (263)
148 PRK07832 short chain dehydroge 48.5 1.3E+02 0.0028 28.8 9.5 50 178-229 2-51 (272)
149 PRK08303 short chain dehydroge 48.4 2E+02 0.0043 28.5 11.0 75 177-252 9-91 (305)
150 PF02826 2-Hacid_dh_C: D-isome 48.3 2.1E+02 0.0046 25.9 11.0 103 179-318 38-142 (178)
151 PRK06483 dihydromonapterin red 48.1 2.3E+02 0.005 26.2 11.2 52 178-234 4-55 (236)
152 PRK07666 fabG 3-ketoacyl-(acyl 48.0 2.3E+02 0.0049 26.2 10.9 70 177-249 8-77 (239)
153 TIGR00670 asp_carb_tr aspartat 47.4 77 0.0017 31.8 7.8 47 186-233 162-208 (301)
154 PRK12745 3-ketoacyl-(acyl-carr 47.3 2.4E+02 0.0052 26.3 11.5 57 177-234 3-59 (256)
155 PRK07985 oxidoreductase; Provi 47.3 2.8E+02 0.0061 27.0 15.5 74 177-251 50-123 (294)
156 PRK05993 short chain dehydroge 47.2 2.7E+02 0.0058 26.7 11.5 51 178-234 6-56 (277)
157 PRK09424 pntA NAD(P) transhydr 47.0 3.9E+02 0.0085 28.9 13.5 50 178-233 166-215 (509)
158 PRK05717 oxidoreductase; Valid 46.0 2.5E+02 0.0054 26.4 11.0 52 177-233 11-62 (255)
159 cd01011 nicotinamidase Nicotin 46.0 93 0.002 28.8 7.7 64 167-230 129-196 (196)
160 TIGR03206 benzo_BadH 2-hydroxy 45.8 2.4E+02 0.0052 26.1 10.7 72 177-251 4-75 (250)
161 TIGR03366 HpnZ_proposed putati 45.5 66 0.0014 31.1 7.0 47 180-231 124-170 (280)
162 PRK08643 acetoin reductase; Va 45.4 2.4E+02 0.0053 26.3 10.8 70 178-250 4-73 (256)
163 PRK09730 putative NAD(P)-bindi 45.3 2.5E+02 0.0054 25.9 11.2 70 178-249 3-72 (247)
164 PLN03154 putative allyl alcoho 45.2 1.6E+02 0.0035 29.6 9.9 48 178-231 161-209 (348)
165 PRK05876 short chain dehydroge 45.1 2.3E+02 0.005 27.3 10.7 56 177-234 7-62 (275)
166 COG0078 ArgF Ornithine carbamo 45.0 1.1E+02 0.0025 30.7 8.4 56 179-234 156-214 (310)
167 PRK12825 fabG 3-ketoacyl-(acyl 44.9 2.5E+02 0.0054 25.7 11.5 57 177-234 7-63 (249)
168 PRK05557 fabG 3-ketoacyl-(acyl 44.9 2.5E+02 0.0054 25.8 11.8 57 177-234 6-62 (248)
169 cd06533 Glyco_transf_WecG_TagA 44.9 1.6E+02 0.0034 26.8 8.8 102 189-309 11-112 (171)
170 PRK12429 3-hydroxybutyrate deh 44.8 2.6E+02 0.0057 26.0 11.2 56 177-234 5-60 (258)
171 PRK05653 fabG 3-ketoacyl-(acyl 44.8 2.5E+02 0.0053 25.8 10.5 55 177-233 6-60 (246)
172 PRK07890 short chain dehydroge 44.5 2.7E+02 0.0058 26.0 11.8 56 177-234 6-61 (258)
173 PRK07370 enoyl-(acyl carrier p 44.2 2.1E+02 0.0046 27.2 10.2 75 177-252 7-83 (258)
174 TIGR03325 BphB_TodD cis-2,3-di 44.2 2.4E+02 0.0052 26.7 10.6 31 177-207 6-36 (262)
175 PRK07791 short chain dehydroge 44.0 2.8E+02 0.0061 26.8 11.2 75 177-252 7-88 (286)
176 PRK07806 short chain dehydroge 44.0 2.7E+02 0.0058 25.9 11.0 57 177-234 7-63 (248)
177 PRK12826 3-ketoacyl-(acyl-carr 43.7 2.7E+02 0.0058 25.7 11.0 56 177-234 7-62 (251)
178 PF04127 DFP: DNA / pantothena 43.6 1.3E+02 0.0029 27.8 8.2 48 178-234 21-68 (185)
179 PRK08628 short chain dehydroge 43.5 2.6E+02 0.0055 26.2 10.6 70 177-250 8-77 (258)
180 cd08301 alcohol_DH_plants Plan 43.4 84 0.0018 31.7 7.6 48 179-231 190-237 (369)
181 cd08291 ETR_like_1 2-enoyl thi 43.3 2E+02 0.0044 28.2 10.2 49 178-232 145-194 (324)
182 PRK08213 gluconate 5-dehydroge 43.0 2.6E+02 0.0056 26.3 10.5 71 177-250 13-83 (259)
183 PRK10538 malonic semialdehyde 42.9 2.6E+02 0.0056 26.2 10.5 31 178-208 2-32 (248)
184 TIGR01316 gltA glutamate synth 42.4 65 0.0014 33.9 6.8 53 180-232 275-329 (449)
185 PRK06113 7-alpha-hydroxysteroi 42.3 2.8E+02 0.0062 25.9 10.7 72 176-250 11-82 (255)
186 cd08300 alcohol_DH_class_III c 42.1 1.4E+02 0.003 30.2 8.9 48 178-231 189-236 (368)
187 PRK06172 short chain dehydroge 41.9 2.9E+02 0.0064 25.7 11.3 56 177-234 8-63 (253)
188 PRK07792 fabG 3-ketoacyl-(acyl 41.8 3.5E+02 0.0076 26.5 11.9 71 177-249 13-83 (306)
189 PRK08085 gluconate 5-dehydroge 41.8 3E+02 0.0065 25.7 11.0 55 177-233 10-64 (254)
190 cd08230 glucose_DH Glucose deh 41.5 80 0.0017 31.7 7.1 49 178-230 175-223 (355)
191 PRK08265 short chain dehydroge 41.3 3E+02 0.0064 26.1 10.7 32 177-208 7-38 (261)
192 PRK06949 short chain dehydroge 41.3 3E+02 0.0065 25.6 11.6 33 177-209 10-42 (258)
193 PRK07677 short chain dehydroge 41.2 2.7E+02 0.0059 26.0 10.4 82 178-262 3-84 (252)
194 cd08256 Zn_ADH2 Alcohol dehydr 40.8 97 0.0021 30.8 7.5 48 178-231 177-224 (350)
195 cd08296 CAD_like Cinnamyl alco 40.7 96 0.0021 30.7 7.4 46 178-230 166-211 (333)
196 PRK05565 fabG 3-ketoacyl-(acyl 40.5 3E+02 0.0064 25.3 11.0 57 177-234 6-62 (247)
197 PLN03050 pyridoxine (pyridoxam 40.4 1.8E+02 0.004 28.2 9.0 53 177-229 61-117 (246)
198 PF00185 OTCace: Aspartate/orn 40.1 1.3E+02 0.0028 27.0 7.4 48 186-233 13-65 (158)
199 PRK08217 fabG 3-ketoacyl-(acyl 39.9 3.1E+02 0.0066 25.3 11.3 70 177-249 6-75 (253)
200 PRK12935 acetoacetyl-CoA reduc 39.9 3.1E+02 0.0067 25.4 11.7 72 177-250 7-78 (247)
201 PF03853 YjeF_N: YjeF-related 38.8 2.9E+02 0.0064 24.8 9.9 58 176-233 25-88 (169)
202 PRK06200 2,3-dihydroxy-2,3-dih 38.7 3.4E+02 0.0074 25.5 10.7 31 177-207 7-37 (263)
203 TIGR02818 adh_III_F_hyde S-(hy 38.6 1.1E+02 0.0024 30.9 7.6 48 178-231 188-235 (368)
204 cd08240 6_hydroxyhexanoate_dh_ 38.5 1E+02 0.0023 30.6 7.3 46 178-229 178-223 (350)
205 PLN02586 probable cinnamyl alc 38.0 1.1E+02 0.0024 31.0 7.4 48 179-231 186-233 (360)
206 PRK06701 short chain dehydroge 38.0 3.9E+02 0.0084 26.0 15.4 71 177-249 47-117 (290)
207 COG1063 Tdh Threonine dehydrog 37.6 4.5E+02 0.0097 26.6 12.6 50 179-233 171-221 (350)
208 PRK06124 gluconate 5-dehydroge 37.6 3.5E+02 0.0075 25.3 11.1 55 177-233 12-66 (256)
209 PRK08278 short chain dehydroge 37.6 3.7E+02 0.0081 25.7 11.1 57 177-233 7-68 (273)
210 PRK09880 L-idonate 5-dehydroge 37.6 1.1E+02 0.0025 30.4 7.4 48 178-231 172-219 (343)
211 TIGR01830 3oxo_ACP_reduc 3-oxo 37.5 3.2E+02 0.007 24.9 10.5 68 180-249 2-69 (239)
212 TIGR02819 fdhA_non_GSH formald 37.4 1.9E+02 0.0041 29.8 9.2 47 178-230 188-234 (393)
213 TIGR02822 adh_fam_2 zinc-bindi 37.3 1.1E+02 0.0025 30.4 7.3 47 179-231 168-214 (329)
214 PRK08017 oxidoreductase; Provi 37.2 3.1E+02 0.0066 25.6 10.0 51 178-234 4-54 (256)
215 cd08549 G1PDH_related Glycerol 37.0 4.5E+02 0.0097 26.4 12.3 31 297-331 81-113 (332)
216 cd08284 FDH_like_2 Glutathione 37.0 2E+02 0.0044 28.3 9.1 48 177-230 169-216 (344)
217 PRK08340 glucose-1-dehydrogena 36.9 3E+02 0.0064 25.9 9.9 31 178-208 2-32 (259)
218 cd08242 MDR_like Medium chain 36.7 1.4E+02 0.0031 29.0 7.9 47 178-231 158-204 (319)
219 COG0300 DltE Short-chain dehyd 36.7 3.9E+02 0.0085 26.4 10.7 58 176-234 6-63 (265)
220 PRK09257 aromatic amino acid a 36.5 4.6E+02 0.01 26.7 11.9 75 155-234 68-149 (396)
221 PRK05650 short chain dehydroge 36.5 3.8E+02 0.0082 25.4 11.0 55 178-234 2-56 (270)
222 cd07766 DHQ_Fe-ADH Dehydroquin 36.1 4.5E+02 0.0097 26.2 11.8 35 296-332 78-114 (332)
223 PRK12828 short chain dehydroge 36.1 3.4E+02 0.0073 24.7 11.4 56 177-234 8-63 (239)
224 cd08276 MDR7 Medium chain dehy 36.1 2.7E+02 0.0059 26.9 9.8 47 178-231 163-209 (336)
225 PRK06123 short chain dehydroge 35.8 3.6E+02 0.0078 24.9 11.5 70 178-249 4-73 (248)
226 cd08231 MDR_TM0436_like Hypoth 35.8 1.3E+02 0.0028 30.1 7.5 45 178-229 180-225 (361)
227 cd08293 PTGR2 Prostaglandin re 35.4 3.3E+02 0.0072 26.7 10.4 50 177-232 156-207 (345)
228 PLN02740 Alcohol dehydrogenase 35.4 1.1E+02 0.0025 31.0 7.1 48 179-231 201-248 (381)
229 TIGR01963 PHB_DH 3-hydroxybuty 35.3 3.7E+02 0.0079 24.9 11.0 55 178-234 3-57 (255)
230 PF03808 Glyco_tran_WecB: Glyc 35.2 3.4E+02 0.0074 24.5 10.2 102 189-309 13-114 (172)
231 PRK07814 short chain dehydroge 35.1 3.9E+02 0.0085 25.2 11.1 71 177-250 11-81 (263)
232 PRK12824 acetoacetyl-CoA reduc 35.0 3.6E+02 0.0078 24.7 11.5 33 177-209 3-35 (245)
233 TIGR03451 mycoS_dep_FDH mycoth 34.8 1.2E+02 0.0026 30.4 7.2 48 178-231 179-226 (358)
234 PRK09135 pteridine reductase; 34.8 3.7E+02 0.0079 24.7 11.5 33 177-209 7-39 (249)
235 TIGR01831 fabG_rel 3-oxoacyl-( 34.5 3.7E+02 0.008 24.7 11.3 54 180-234 2-55 (239)
236 PRK07062 short chain dehydroge 34.5 4E+02 0.0086 25.1 10.5 33 177-209 9-41 (265)
237 PRK09242 tropinone reductase; 34.3 3.9E+02 0.0085 25.0 10.8 71 177-250 10-82 (257)
238 cd08277 liver_alcohol_DH_like 34.1 1.3E+02 0.0028 30.4 7.2 47 178-230 187-233 (365)
239 cd00762 NAD_bind_malic_enz NAD 34.1 4.6E+02 0.01 25.7 13.5 111 296-413 106-219 (254)
240 PRK06198 short chain dehydroge 33.7 4E+02 0.0087 24.9 11.3 71 177-249 7-77 (260)
241 cd08270 MDR4 Medium chain dehy 33.6 2.1E+02 0.0046 27.4 8.4 47 177-229 134-180 (305)
242 PF13407 Peripla_BP_4: Peripla 33.3 4E+02 0.0086 24.7 16.3 134 188-327 16-158 (257)
243 cd08297 CAD3 Cinnamyl alcohol 33.1 1.8E+02 0.0038 28.7 7.9 48 177-230 167-214 (341)
244 PRK12831 putative oxidoreducta 33.1 1.1E+02 0.0024 32.4 6.8 53 180-232 284-338 (464)
245 PRK07063 short chain dehydroge 33.0 4.1E+02 0.009 24.8 10.7 55 177-233 8-64 (260)
246 PF13460 NAD_binding_10: NADH( 33.0 1.7E+02 0.0038 25.8 7.2 47 179-233 1-47 (183)
247 PRK12827 short chain dehydroge 32.8 3.9E+02 0.0085 24.5 11.4 58 177-234 7-66 (249)
248 cd01075 NAD_bind_Leu_Phe_Val_D 32.7 3.4E+02 0.0074 25.2 9.3 45 162-206 7-57 (200)
249 PRK07067 sorbitol dehydrogenas 32.6 4.2E+02 0.0091 24.8 11.3 33 177-209 7-39 (257)
250 PRK08261 fabG 3-ketoacyl-(acyl 32.6 4.7E+02 0.01 27.2 11.4 67 177-249 211-277 (450)
251 cd08239 THR_DH_like L-threonin 32.5 1.5E+02 0.0033 29.2 7.4 48 178-231 166-213 (339)
252 cd08233 butanediol_DH_like (2R 32.5 1.6E+02 0.0035 29.3 7.6 48 178-231 175-222 (351)
253 cd01012 YcaC_related YcaC rela 32.5 3.2E+02 0.007 24.0 8.8 61 171-231 83-147 (157)
254 PLN02178 cinnamyl-alcohol dehy 32.3 1.7E+02 0.0038 29.8 7.9 48 179-231 181-228 (375)
255 PRK08251 short chain dehydroge 32.3 4.1E+02 0.0089 24.6 10.6 32 178-209 4-35 (248)
256 PRK07825 short chain dehydroge 32.2 4.4E+02 0.0096 24.9 11.0 32 177-208 6-37 (273)
257 PRK07774 short chain dehydroge 32.1 4.1E+02 0.009 24.5 10.7 55 177-233 7-61 (250)
258 PTZ00354 alcohol dehydrogenase 32.0 3E+02 0.0066 26.6 9.3 48 178-231 143-190 (334)
259 PRK06138 short chain dehydroge 31.9 4.2E+02 0.009 24.5 11.2 70 177-250 6-75 (252)
260 PLN02514 cinnamyl-alcohol dehy 31.8 1.9E+02 0.004 29.2 7.9 47 179-231 184-230 (357)
261 PRK06500 short chain dehydroge 31.6 4.2E+02 0.009 24.4 11.1 52 177-233 7-58 (249)
262 PRK02842 light-independent pro 31.5 6.3E+02 0.014 26.4 13.4 53 178-233 292-345 (427)
263 cd08189 Fe-ADH5 Iron-containin 31.3 4.7E+02 0.01 26.7 10.9 14 296-310 83-96 (374)
264 PF01041 DegT_DnrJ_EryC1: DegT 31.2 1.1E+02 0.0024 31.0 6.1 64 171-238 35-98 (363)
265 cd05188 MDR Medium chain reduc 31.0 1.8E+02 0.0039 27.0 7.3 44 178-228 137-180 (271)
266 PF00857 Isochorismatase: Isoc 31.0 2.2E+02 0.0047 25.1 7.5 82 143-231 86-171 (174)
267 PRK06079 enoyl-(acyl carrier p 30.9 3.6E+02 0.0078 25.4 9.4 32 177-208 8-41 (252)
268 COG0334 GdhA Glutamate dehydro 30.8 84 0.0018 33.0 5.1 45 163-207 189-237 (411)
269 PF02540 NAD_synthase: NAD syn 30.8 4.1E+02 0.009 25.6 9.7 65 170-234 12-81 (242)
270 cd00401 AdoHcyase S-adenosyl-L 30.6 1.4E+02 0.003 31.5 6.7 48 177-230 202-249 (413)
271 PF01262 AlaDh_PNT_C: Alanine 30.6 1.9E+02 0.0042 25.9 7.0 50 179-234 22-71 (168)
272 TIGR01292 TRX_reduct thioredox 30.6 1.4E+02 0.0031 28.6 6.6 52 180-231 144-196 (300)
273 PRK07576 short chain dehydroge 30.6 4.7E+02 0.01 24.7 10.6 71 177-250 10-80 (264)
274 cd08254 hydroxyacyl_CoA_DH 6-h 30.5 1.9E+02 0.0041 28.2 7.6 47 178-231 168-214 (338)
275 PRK07102 short chain dehydroge 30.5 3.8E+02 0.0082 24.8 9.4 32 178-209 3-34 (243)
276 cd08287 FDH_like_ADH3 formalde 30.5 1.5E+02 0.0033 29.2 7.0 46 178-229 171-216 (345)
277 PRK07818 dihydrolipoamide dehy 30.5 1.6E+02 0.0034 31.1 7.3 54 177-231 173-232 (466)
278 PTZ00331 alpha/beta hydrolase; 30.4 3.1E+02 0.0068 25.7 8.7 62 170-231 140-205 (212)
279 cd08243 quinone_oxidoreductase 30.2 2.3E+02 0.0049 27.2 8.0 48 178-231 145-192 (320)
280 cd08274 MDR9 Medium chain dehy 29.9 1.9E+02 0.0041 28.5 7.5 48 177-231 179-226 (350)
281 PRK07060 short chain dehydroge 29.5 4.4E+02 0.0096 24.2 9.7 53 177-234 10-62 (245)
282 cd08246 crotonyl_coA_red croto 29.4 2.1E+02 0.0045 29.1 7.8 49 177-231 195-243 (393)
283 PRK09134 short chain dehydroge 29.3 4.8E+02 0.01 24.4 11.8 56 177-233 10-65 (258)
284 cd08192 Fe-ADH7 Iron-containin 29.3 6.2E+02 0.014 25.7 11.7 14 296-310 81-94 (370)
285 PRK09754 phenylpropionate diox 29.2 2.9E+02 0.0063 28.3 8.9 51 181-231 148-205 (396)
286 cd05280 MDR_yhdh_yhfp Yhdh and 29.1 3.1E+02 0.0068 26.4 8.8 47 178-230 149-195 (325)
287 TIGR03201 dearomat_had 6-hydro 29.0 2.3E+02 0.0049 28.3 8.0 47 179-231 169-215 (349)
288 TIGR01829 AcAcCoA_reduct aceto 29.0 4.5E+02 0.0098 24.0 11.6 71 178-250 2-72 (242)
289 PRK07231 fabG 3-ketoacyl-(acyl 28.9 4.6E+02 0.01 24.1 10.3 33 177-209 6-38 (251)
290 PRK00779 ornithine carbamoyltr 28.9 2.2E+02 0.0047 28.6 7.7 54 179-233 155-209 (304)
291 PRK07904 short chain dehydroge 28.8 4.5E+02 0.0097 24.9 9.7 55 177-232 9-65 (253)
292 PRK10309 galactitol-1-phosphat 28.7 1.6E+02 0.0035 29.3 6.8 48 178-231 163-210 (347)
293 COG2236 Predicted phosphoribos 28.4 1.6E+02 0.0034 27.7 6.1 51 281-332 15-65 (192)
294 COG0604 Qor NADPH:quinone redu 28.3 2.4E+02 0.0053 28.4 8.0 50 177-232 144-193 (326)
295 PRK07775 short chain dehydroge 28.2 5.3E+02 0.011 24.5 11.6 56 177-234 11-66 (274)
296 PRK07201 short chain dehydroge 28.2 4.1E+02 0.0088 29.0 10.4 73 177-252 372-444 (657)
297 PRK12771 putative glutamate sy 28.1 1.9E+02 0.0042 31.3 7.7 53 179-231 139-206 (564)
298 TIGR00696 wecB_tagA_cpsF bacte 28.1 4.7E+02 0.01 23.9 10.1 100 189-308 13-112 (177)
299 cd05284 arabinose_DH_like D-ar 28.0 2.4E+02 0.0051 27.7 7.8 46 178-230 170-216 (340)
300 PLN02918 pyridoxine (pyridoxam 27.9 3.1E+02 0.0067 30.0 9.0 54 177-230 136-193 (544)
301 PF00465 Fe-ADH: Iron-containi 27.9 4.8E+02 0.01 26.5 10.2 111 203-333 2-132 (366)
302 PF00702 Hydrolase: haloacid d 27.9 1.3E+02 0.0029 27.1 5.6 67 163-235 131-204 (215)
303 PRK05854 short chain dehydroge 27.9 5.4E+02 0.012 25.3 10.4 33 177-209 15-47 (313)
304 KOG1205 Predicted dehydrogenas 27.7 4.8E+02 0.01 26.0 9.6 55 176-233 12-69 (282)
305 PRK06180 short chain dehydroge 27.6 5.4E+02 0.012 24.5 10.8 32 177-208 5-36 (277)
306 cd08292 ETR_like_2 2-enoyl thi 27.6 2.1E+02 0.0045 27.8 7.2 46 178-229 142-187 (324)
307 cd08298 CAD2 Cinnamyl alcohol 27.6 2.2E+02 0.0047 27.8 7.4 45 178-229 170-214 (329)
308 PRK04523 N-acetylornithine car 27.5 2.5E+02 0.0054 28.6 7.9 48 186-233 185-236 (335)
309 PF07279 DUF1442: Protein of u 27.4 2.3E+02 0.005 27.2 7.0 48 178-227 44-94 (218)
310 cd08285 NADP_ADH NADP(H)-depen 27.2 1.8E+02 0.004 28.9 6.9 47 178-230 169-215 (351)
311 CHL00194 ycf39 Ycf39; Provisio 27.2 2.5E+02 0.0054 27.7 7.8 32 178-209 2-33 (317)
312 PF00732 GMC_oxred_N: GMC oxid 26.9 68 0.0015 31.2 3.6 36 297-334 1-36 (296)
313 smart00822 PKS_KR This enzymat 26.8 3.9E+02 0.0084 22.6 10.0 57 178-234 2-60 (180)
314 PRK06115 dihydrolipoamide dehy 26.8 2.2E+02 0.0047 30.1 7.7 54 177-231 175-234 (466)
315 PRK09291 short chain dehydroge 26.7 3.4E+02 0.0073 25.3 8.3 32 178-209 4-35 (257)
316 PHA02554 13 neck protein; Prov 26.7 83 0.0018 31.5 4.0 40 214-253 8-47 (311)
317 PLN02827 Alcohol dehydrogenase 26.7 2.2E+02 0.0049 28.9 7.5 47 179-230 196-242 (378)
318 PRK06482 short chain dehydroge 26.6 5.5E+02 0.012 24.3 11.2 32 178-209 4-35 (276)
319 PF13450 NAD_binding_8: NAD(P) 26.6 92 0.002 23.6 3.6 26 184-209 3-28 (68)
320 PLN02702 L-idonate 5-dehydroge 26.6 2.5E+02 0.0053 28.2 7.7 48 178-231 184-231 (364)
321 cd08289 MDR_yhfp_like Yhfp put 26.6 1.7E+02 0.0038 28.4 6.5 47 178-230 149-195 (326)
322 PRK00768 nadE NAD synthetase; 26.3 5.8E+02 0.013 25.2 9.9 66 169-234 31-109 (268)
323 cd08278 benzyl_alcohol_DH Benz 26.3 2.1E+02 0.0046 28.8 7.2 48 178-231 189-236 (365)
324 cd08288 MDR_yhdh Yhdh putative 26.2 2.2E+02 0.0047 27.7 7.1 48 178-231 149-196 (324)
325 TIGR01751 crot-CoA-red crotony 25.9 1.9E+02 0.0042 29.5 6.9 49 177-231 191-239 (398)
326 PRK12384 sorbitol-6-phosphate 25.8 5.5E+02 0.012 23.9 11.6 32 177-208 3-34 (259)
327 PLN02253 xanthoxin dehydrogena 25.8 5.7E+02 0.012 24.3 9.9 32 177-208 19-50 (280)
328 PF01494 FAD_binding_3: FAD bi 25.8 85 0.0018 30.7 4.1 29 181-209 5-33 (356)
329 TIGR03385 CoA_CoA_reduc CoA-di 25.8 3.5E+02 0.0075 27.9 8.9 54 177-231 138-198 (427)
330 cd08245 CAD Cinnamyl alcohol d 25.7 3.2E+02 0.007 26.6 8.3 47 178-231 165-211 (330)
331 PRK08220 2,3-dihydroxybenzoate 25.4 5.4E+02 0.012 23.8 10.1 33 177-209 9-41 (252)
332 cd01015 CSHase N-carbamoylsarc 25.2 3.4E+02 0.0075 24.4 7.8 61 171-231 109-173 (179)
333 PRK09186 flagellin modificatio 25.2 5.5E+02 0.012 23.8 9.7 33 177-209 5-37 (256)
334 cd08260 Zn_ADH6 Alcohol dehydr 25.1 2.3E+02 0.0049 28.0 7.1 44 178-228 168-211 (345)
335 TIGR02817 adh_fam_1 zinc-bindi 25.1 3.1E+02 0.0067 26.8 8.0 47 178-230 151-198 (336)
336 cd05283 CAD1 Cinnamyl alcohol 25.0 2.7E+02 0.0058 27.5 7.6 47 178-231 172-218 (337)
337 PRK06953 short chain dehydroge 24.8 5.2E+02 0.011 23.6 9.1 51 178-234 3-53 (222)
338 PRK09423 gldA glycerol dehydro 24.7 7.5E+02 0.016 25.1 11.8 32 296-331 84-117 (366)
339 PRK04965 NADH:flavorubredoxin 24.7 3.6E+02 0.0079 27.3 8.6 53 178-231 143-202 (377)
340 KOG0023 Alcohol dehydrogenase, 24.7 2.7E+02 0.0059 28.5 7.2 46 184-234 189-234 (360)
341 PRK07024 short chain dehydroge 24.6 5.8E+02 0.013 23.8 10.2 31 178-208 4-34 (257)
342 PRK06057 short chain dehydroge 24.5 5.8E+02 0.013 23.8 11.5 32 177-208 8-39 (255)
343 PRK06924 short chain dehydroge 24.5 4.4E+02 0.0096 24.4 8.7 32 178-209 3-34 (251)
344 PRK06484 short chain dehydroge 24.4 5.7E+02 0.012 27.0 10.4 69 177-251 6-74 (520)
345 cd08191 HHD 6-hydroxyhexanoate 24.3 7.9E+02 0.017 25.2 12.7 14 296-310 79-92 (386)
346 PRK07326 short chain dehydroge 24.2 5.5E+02 0.012 23.4 10.5 32 177-208 7-38 (237)
347 cd08185 Fe-ADH1 Iron-containin 24.2 5.1E+02 0.011 26.5 9.7 31 201-234 3-33 (380)
348 PLN02342 ornithine carbamoyltr 24.2 2.9E+02 0.0063 28.4 7.7 45 187-232 205-250 (348)
349 cd08551 Fe-ADH iron-containing 24.2 7.6E+02 0.017 25.0 11.2 36 296-332 80-132 (370)
350 PRK01438 murD UDP-N-acetylmura 24.0 2.7E+02 0.0059 29.3 7.8 50 180-230 19-68 (480)
351 PRK00509 argininosuccinate syn 23.8 8.6E+02 0.019 25.5 13.4 57 177-233 3-62 (399)
352 cd08258 Zn_ADH4 Alcohol dehydr 23.7 2.6E+02 0.0057 27.2 7.2 46 178-228 167-212 (306)
353 cd08282 PFDH_like Pseudomonas 23.7 2.7E+02 0.0059 28.1 7.5 46 178-229 179-224 (375)
354 PRK08227 autoinducer 2 aldolas 23.7 6.7E+02 0.014 24.7 9.8 91 144-234 75-179 (264)
355 COG2242 CobL Precorrin-6B meth 23.1 1.7E+02 0.0036 27.4 5.2 50 283-333 20-69 (187)
356 PRK06260 threonine synthase; V 23.1 8.4E+02 0.018 25.1 13.8 36 176-211 218-261 (397)
357 PRK06847 hypothetical protein; 23.1 1.1E+02 0.0023 30.8 4.4 28 180-207 7-34 (375)
358 PF02737 3HCDH_N: 3-hydroxyacy 23.0 1.2E+02 0.0025 27.8 4.2 30 181-210 3-32 (180)
359 PRK10624 L-1,2-propanediol oxi 23.0 8.3E+02 0.018 25.0 11.5 14 296-310 87-100 (382)
360 PF12831 FAD_oxidored: FAD dep 23.0 92 0.002 32.6 3.9 30 181-210 3-32 (428)
361 COG1433 Uncharacterized conser 22.9 3.5E+02 0.0075 23.4 6.8 52 189-247 54-105 (121)
362 PRK14619 NAD(P)H-dependent gly 22.9 7.2E+02 0.016 24.5 10.2 50 180-235 7-56 (308)
363 PRK05875 short chain dehydroge 22.9 6.5E+02 0.014 23.7 10.5 33 177-209 8-40 (276)
364 PRK09126 hypothetical protein; 22.9 93 0.002 31.5 3.9 27 181-207 7-33 (392)
365 cd05279 Zn_ADH1 Liver alcohol 22.8 2.2E+02 0.0047 28.7 6.5 45 178-228 186-230 (365)
366 cd08262 Zn_ADH8 Alcohol dehydr 22.8 3.2E+02 0.007 26.8 7.7 45 178-228 164-208 (341)
367 KOG0785 Isocitrate dehydrogena 22.7 1.1E+02 0.0023 31.0 3.9 34 58-91 58-91 (365)
368 PRK06101 short chain dehydroge 22.7 5.1E+02 0.011 24.0 8.7 31 178-208 3-33 (240)
369 PRK07251 pyridine nucleotide-d 22.4 2.8E+02 0.0061 28.8 7.4 54 177-231 158-217 (438)
370 PRK05786 fabG 3-ketoacyl-(acyl 22.4 6E+02 0.013 23.2 9.2 33 177-209 6-38 (238)
371 PRK10669 putative cation:proto 22.3 2.9E+02 0.0063 29.9 7.8 48 180-233 420-467 (558)
372 cd08172 GlyDH-like1 Glycerol d 22.3 8.1E+02 0.018 24.7 11.1 32 296-331 76-109 (347)
373 PRK08264 short chain dehydroge 22.1 4.2E+02 0.0091 24.3 8.0 33 177-209 7-40 (238)
374 PRK07856 short chain dehydroge 22.1 6.3E+02 0.014 23.5 9.3 33 177-209 7-39 (252)
375 cd08299 alcohol_DH_class_I_II_ 22.1 2.9E+02 0.0063 28.0 7.3 45 178-228 193-237 (373)
376 PRK11706 TDP-4-oxo-6-deoxy-D-g 22.0 3.1E+02 0.0068 27.9 7.5 59 173-235 43-101 (375)
377 PRK13512 coenzyme A disulfide 21.9 5.2E+02 0.011 26.9 9.4 54 177-231 149-208 (438)
378 PRK11891 aspartate carbamoyltr 21.9 2.4E+02 0.0052 29.9 6.6 47 186-233 253-300 (429)
379 cd08250 Mgc45594_like Mgc45594 21.8 3.5E+02 0.0077 26.2 7.7 47 177-229 141-187 (329)
380 PRK14694 putative mercuric red 21.6 3.4E+02 0.0074 28.6 7.9 54 177-231 179-237 (468)
381 TIGR00658 orni_carb_tr ornithi 21.6 3.7E+02 0.0081 26.9 7.8 47 186-233 158-208 (304)
382 PRK12562 ornithine carbamoyltr 21.5 2.9E+02 0.0063 28.2 7.0 47 187-233 168-217 (334)
383 cd08193 HVD 5-hydroxyvalerate 21.5 8.7E+02 0.019 24.7 11.2 35 296-331 83-134 (376)
384 TIGR03845 sulfopyru_alph sulfo 21.4 5.9E+02 0.013 22.7 11.0 44 163-207 46-91 (157)
385 PF04673 Cyclase_polyket: Poly 21.4 58 0.0013 27.1 1.5 41 78-121 34-74 (97)
386 cd08259 Zn_ADH5 Alcohol dehydr 21.3 4.3E+02 0.0093 25.5 8.2 47 177-229 164-210 (332)
387 PRK07453 protochlorophyllide o 21.2 7.8E+02 0.017 24.1 10.9 32 177-208 7-38 (322)
388 PRK05855 short chain dehydroge 21.2 8.6E+02 0.019 25.6 11.1 71 177-250 316-386 (582)
389 cd08244 MDR_enoyl_red Possible 21.2 3.8E+02 0.0082 25.8 7.7 46 177-228 144-189 (324)
390 PRK08339 short chain dehydroge 21.1 6.3E+02 0.014 23.9 9.1 32 177-208 9-40 (263)
391 PF09837 DUF2064: Uncharacteri 21.1 5.3E+02 0.011 22.0 8.7 97 193-308 3-99 (122)
392 PRK09422 ethanol-active dehydr 21.1 5E+02 0.011 25.3 8.6 47 178-231 165-212 (338)
393 PRK12747 short chain dehydroge 21.0 6.7E+02 0.015 23.2 9.8 56 177-233 5-60 (252)
394 PRK11609 nicotinamidase/pyrazi 21.0 5.1E+02 0.011 24.0 8.2 62 171-232 137-204 (212)
395 PRK12809 putative oxidoreducta 21.0 3E+02 0.0066 30.5 7.6 53 180-232 313-380 (639)
396 TIGR01064 pyruv_kin pyruvate k 21.0 9.1E+02 0.02 25.8 10.9 47 161-209 359-405 (473)
397 cd08176 LPO Lactadehyde:propan 20.8 6.1E+02 0.013 25.9 9.4 31 200-233 4-35 (377)
398 PF00890 FAD_binding_2: FAD bi 20.7 1.1E+02 0.0024 31.4 3.9 28 182-209 4-31 (417)
399 cd08550 GlyDH-like Glycerol_de 20.7 8.7E+02 0.019 24.4 10.9 32 296-331 77-110 (349)
400 PRK05976 dihydrolipoamide dehy 20.7 3E+02 0.0065 29.0 7.3 54 177-231 181-240 (472)
401 PF00890 FAD_binding_2: FAD bi 20.7 1.1E+02 0.0025 31.3 4.0 33 298-333 1-33 (417)
402 PF13561 adh_short_C2: Enoyl-( 20.6 5.2E+02 0.011 23.9 8.3 66 184-253 4-69 (241)
403 PRK05884 short chain dehydroge 20.5 6.7E+02 0.015 23.1 9.3 50 179-234 3-53 (223)
404 cd08177 MAR Maleylacetate redu 20.5 8.7E+02 0.019 24.3 11.4 34 296-333 77-112 (337)
405 PRK10083 putative oxidoreducta 20.5 3.8E+02 0.0081 26.3 7.6 48 179-231 163-211 (339)
406 PRK06753 hypothetical protein; 20.5 1.1E+02 0.0025 30.6 3.9 28 181-208 4-31 (373)
407 PRK05447 1-deoxy-D-xylulose 5- 20.4 9.9E+02 0.021 24.9 13.7 54 178-234 3-58 (385)
408 PRK15408 autoinducer 2-binding 20.3 8.8E+02 0.019 24.3 20.5 59 282-349 196-256 (336)
409 PRK11749 dihydropyrimidine deh 20.3 2.7E+02 0.0059 29.2 6.8 52 180-231 276-330 (457)
410 PRK08849 2-octaprenyl-3-methyl 20.3 1.2E+02 0.0025 31.0 4.0 28 181-208 7-34 (384)
411 cd08286 FDH_like_ADH2 formalde 20.3 3.3E+02 0.0071 26.8 7.1 45 177-228 168-213 (345)
412 PRK09564 coenzyme A disulfide 20.2 5.8E+02 0.012 26.4 9.2 53 177-230 150-209 (444)
413 cd05288 PGDH Prostaglandin deh 20.2 4.1E+02 0.0089 25.7 7.8 45 178-228 148-193 (329)
414 PF00670 AdoHcyase_NAD: S-aden 20.1 1.6E+02 0.0034 26.9 4.2 29 179-207 25-53 (162)
415 TIGR02032 GG-red-SF geranylger 20.0 1.3E+02 0.0028 28.6 4.1 28 182-209 5-32 (295)
416 cd08234 threonine_DH_like L-th 20.0 4E+02 0.0088 25.9 7.7 45 178-228 162-206 (334)
No 1
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=4.4e-88 Score=648.59 Aligned_cols=356 Identities=68% Similarity=1.100 Sum_probs=343.9
Q ss_pred CCCCCCCCccCCCCccccccccccHHHHHHHHHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhhhHhcCCCCCCCeEE
Q 013596 68 QRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIY 147 (439)
Q Consensus 68 ~~~~~~~~~g~~GG~~vPe~l~~~l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~Iy 147 (439)
..||.+|+||.|||+||||+||+.+++|+++|.+...||+|++++..++++|+||||||+.+++|++.+ +++||
T Consensus 1 ~~~~~~g~fG~fGG~yVpE~Lmpal~eLe~ay~~~~~D~~F~~el~~~l~~Y~GRptpLy~a~~Lt~~~------gakiy 74 (396)
T COG0133 1 AYPDEKGYFGEFGGQYVPETLMPALEELEKAYEKAKNDPEFQAELDYLLKDYAGRPTPLYFAERLTEHL------GAKIY 74 (396)
T ss_pred CCCccCCcccccCCEechHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhh------CceEE
Confidence 368999999999999999999999999999999999999999999999999999999999999999998 79999
Q ss_pred EEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCC
Q 013596 148 LKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGA 227 (439)
Q Consensus 148 lK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA 227 (439)
|||||+||||+||+++++.++++|+++||+++|+++++|+||+|.|.+|+++|++|+|||...+++|+..|+.+|+.+||
T Consensus 75 LKREDL~HtGAHKiNN~lGQ~LLAkrMGK~riIAETGAGQHGVAtAta~A~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA 154 (396)
T COG0133 75 LKREDLNHTGAHKINNALGQALLAKRMGKTRIIAETGAGQHGVATATAAALFGLECVIYMGAEDVERQALNVFRMRLLGA 154 (396)
T ss_pred EehhhhcccchhhHHHHHHHHHHHHHhCCceEEeecCCCcccHHHHHHHHHhCCceEEEecchhhhhcccchhhhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCch
Q 013596 228 EVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGG 307 (439)
Q Consensus 228 ~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~G 307 (439)
+|++|..++.+++||+++++++|+.+.++++|+++++.+|||||.||++||.+||.|+..||+++.|..||+||+|||||
T Consensus 155 ~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ~vIG~E~k~Qile~egrlPD~vvACVGGG 234 (396)
T COG0133 155 EVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGG 234 (396)
T ss_pred eEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEEecCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCcccccccCCCCCCCchh
Q 013596 308 SNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHS 387 (439)
Q Consensus 308 G~~aGi~~~~~~~p~vrvigVep~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~ 387 (439)
+|++|+++.|..+++|++||||+.+.+++++.|+++|..|+++++||+++|++||++||+.+.|||+.|||||++||++.
T Consensus 235 SNAiG~F~~Fi~d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~tyllQd~~GQi~e~hSISAGLDYPgVGPeha 314 (396)
T COG0133 235 SNAIGIFHPFIDDESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMKTYLLQDEDGQILESHSISAGLDYPGVGPEHA 314 (396)
T ss_pred cchhhhcccccCCCCceEEEeccCcCccCCCccceeecCCCceeeecccceeeEcCCCCEeeeeeeccCCCCCCCChhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEE--chhHHHHHH
Q 013596 388 FLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLS--RHGGLWLLV 430 (439)
Q Consensus 388 ~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~--epagA~a~A 430 (439)
++++..+.+++.|+|+|+++|++.|.+.+ ||+. |.+-|+++|
T Consensus 315 ~l~~~gRa~y~~itD~EAl~af~~L~r~E-GIIPALESsHAlA~a 358 (396)
T COG0133 315 YLKDIGRAEYVSITDEEALEAFQLLSRLE-GIIPALESSHALAYA 358 (396)
T ss_pred HHHhcCceeEEecChHHHHHHHHHHHHhc-CcchhhhhHHHHHHH
Confidence 99999999999999999999999886554 8885 444444444
No 2
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=1.1e-78 Score=621.37 Aligned_cols=361 Identities=69% Similarity=1.097 Sum_probs=339.5
Q ss_pred CCCCCCCCccCCCCccccccccccHHHHHHHHHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhhhHhcCCCCCCCeEE
Q 013596 68 QRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIY 147 (439)
Q Consensus 68 ~~~~~~~~~g~~GG~~vPe~l~~~l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~Iy 147 (439)
..||.+|+||+|||+||||+||+.++||+++|.+.++|++|++|+..++++|+|+||||+++++|++++ ++++||
T Consensus 3 ~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~grpTPL~~~~~Ls~~~-----gg~~Iy 77 (397)
T PRK04346 3 TLPDENGYFGEFGGRFVPETLMPALEELEEAYEKAKNDPEFQAELDYLLKNYVGRPTPLYFAERLSEHL-----GGAKIY 77 (397)
T ss_pred CCCCCCCcccCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCceEhHHHHHHc-----CCCeEE
Confidence 479999999999999999999999999999999999999999999999999999999999999999988 479999
Q ss_pred EEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCC
Q 013596 148 LKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGA 227 (439)
Q Consensus 148 lK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA 227 (439)
+|+|++|||||||+|+++++++.++++|++++|+++|+||||+|+|++|+++|++|+||||+.+.+++..|+.+|+.+||
T Consensus 78 lK~EdlnptGS~K~r~al~~~l~A~~~Gk~~vIaetgaGnhG~A~A~~aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA 157 (397)
T PRK04346 78 LKREDLNHTGAHKINNVLGQALLAKRMGKKRIIAETGAGQHGVATATAAALLGLECVIYMGAEDVERQALNVFRMKLLGA 157 (397)
T ss_pred EEECCCCCccchHHHHHHHHHHHHHHcCCCeEEEecCcHHHHHHHHHHHHHcCCcEEEEecCCchhhhhhHHHHHHHCCC
Confidence 99999999999999999999999999999989998999999999999999999999999999777777789999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCch
Q 013596 228 EVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGG 307 (439)
Q Consensus 228 ~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~G 307 (439)
+|+.++.+..+++|+++++.++|+++.++++|+++++.|+|||+.+|+++|.++|.|+.+|+.++.+..||+||+|||||
T Consensus 158 ~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgG 237 (397)
T PRK04346 158 EVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGG 237 (397)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHhcchHHHHHHHHHHHhhCCCCCEEEEecCcc
Confidence 99999876678999999999988887677899999999999999999999999999999999888887899999999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEEecCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCcccccccCCCCCCCchh
Q 013596 308 SNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHS 387 (439)
Q Consensus 308 G~~aGi~~~~~~~p~vrvigVep~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~ 387 (439)
||++|++.+|+.+|++|||||||++++.+++.|+++|..|+++++||.++|++|+++|++.++++|++||++|++||++.
T Consensus 238 g~~~Gi~~~f~~~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gL~~pgvgp~~~ 317 (397)
T PRK04346 238 SNAIGIFHPFIDDESVRLIGVEAAGKGLETGKHAATLTKGRPGVLHGAKTYLLQDEDGQILETHSISAGLDYPGVGPEHA 317 (397)
T ss_pred HhHHHHHHHHhhCCCCeEEEEecCCCccccccccchhhcCCeeeeccccceecccCCCccCCCceeeccccCCCCCHHHH
Confidence 99999999998899999999999999888888999999999999999999999999999999999999999999999988
Q ss_pred hhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHHHHHHh
Q 013596 388 FLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVNCLH 434 (439)
Q Consensus 388 ~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~Aal~~ 434 (439)
++.+..+++++.|+|+|+++|+++|+.. +||+..++++.++|+++.
T Consensus 318 ~l~~~~~~~~v~VtD~eal~a~~~L~~~-eGIi~~~esa~AlA~a~k 363 (397)
T PRK04346 318 YLKDIGRAEYVSITDDEALEAFQLLSRL-EGIIPALESSHALAYALK 363 (397)
T ss_pred HHHhcCCeEEEEECHHHHHHHHHHHHHH-cCCEeccHHHHHHHHHHH
Confidence 8888888999999999999999998654 499988888888887664
No 3
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=4.4e-78 Score=618.03 Aligned_cols=375 Identities=83% Similarity=1.287 Sum_probs=349.4
Q ss_pred CCCCCCCCCCCCCCCCccCCCCccccccccccHHHHHHHHHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhhhHhcCC
Q 013596 60 KESDPAPWQRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRP 139 (439)
Q Consensus 60 ~~~~~~~~~~~~~~~~~g~~GG~~vPe~l~~~l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~ 139 (439)
++.||+.+..||.+|+||+|||+||||+||+.|+||+++|++.++|++|++|+..++++|+||+|||+++++|++.+|..
T Consensus 3 ~~~~~~~~~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~vGr~TPL~~~~~Ls~~~g~~ 82 (410)
T PLN02618 3 PGSDPTGFQRPDSFGRFGKFGGKYVPETLMTALSELEAAFNALATDPEFQEELAGILKDYVGRETPLYFAERLTEHYKRA 82 (410)
T ss_pred CCCCchhccCCCCCCcccCcCCEeCCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHhcCCCCceeEhhhHHHHhccc
Confidence 46788888899999999999999999999999999999999999999999999999999999999999999999987211
Q ss_pred CCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHH
Q 013596 140 NGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNV 219 (439)
Q Consensus 140 ~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~ 219 (439)
++++.+||+|+|++|||||||+|+++.+++.+++++++++|+++|+||||+|+|++|+++|++|+||||+.+++++..|+
T Consensus 83 ~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~~~vIaesgaGNhG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv 162 (410)
T PLN02618 83 DGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAGQHGVATATVCARFGLECIVYMGAQDMERQALNV 162 (410)
T ss_pred cCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhhH
Confidence 11268999999999999999999999999999999998888899999999999999999999999999997777778899
Q ss_pred HHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCE
Q 013596 220 FRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDV 299 (439)
Q Consensus 220 ~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~ 299 (439)
.+|+.|||+|+.++.+..+++|++.++.++|.++.++.+|+++|..|+|||+.+++++|.++|.|+.+|++++.+..||+
T Consensus 163 ~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~ 242 (410)
T PLN02618 163 FRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHSVIGKETRRQAMEKWGGKPDV 242 (410)
T ss_pred HHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCCCHHHHHHhhHHHHHHHHHHHHHHhCCCCCE
Confidence 99999999999998766789999988888888876788999999999999998999999999999999999988878999
Q ss_pred EEEcCCchHHHHHHHHHHhcCCCcEEEEEecCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCcccccccCC
Q 013596 300 LIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDY 379 (439)
Q Consensus 300 vvvpvG~GG~~aGi~~~~~~~p~vrvigVep~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~ 379 (439)
||+|||+|||++|++.+|+.+|++|||||||++++.+.+.|+++|..|+++++||.++|++|+++|++.+++||++||++
T Consensus 243 VV~~VGgGg~~~Gi~~~f~~~~~v~ligVEa~G~~~~~~~~~a~l~~g~~gv~~g~~~~~l~~~~g~~~~~~sia~gl~~ 322 (410)
T PLN02618 243 LVACVGGGSNAMGLFHEFIDDEDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDEDGQIIEPHSISAGLDY 322 (410)
T ss_pred EEEEeCchHHHHHHHHHHHhCCCceEEEEEeCCCcccccccccchhcCCcceeccccccccccccCCCCCCcchhhhhcC
Confidence 99999999999999999988899999999999998877889999999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHHHHHHhh
Q 013596 380 PGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVNCLHK 435 (439)
Q Consensus 380 ~~vg~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~Aal~~~ 435 (439)
+++|+.+.++++..+++++.|+|+|+++|+++|+.. +||+.+++++.++|+++..
T Consensus 323 pgvgp~~~~l~~~~~~~~v~VtD~Eal~a~~~La~~-eGIi~~~sSa~a~a~a~~~ 377 (410)
T PLN02618 323 PGVGPEHSFLKDTGRAEYYSVTDEEALEAFQRLSRL-EGIIPALETSHALAYLEKL 377 (410)
T ss_pred CCCcHHHHHHHhhcCcEEEEECHHHHHHHHHHHHHH-cCceEchhHHHHHHHHHHH
Confidence 999999889999889999999999999999998654 4999999999999987754
No 4
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1.6e-76 Score=606.33 Aligned_cols=366 Identities=58% Similarity=0.931 Sum_probs=341.7
Q ss_pred CCCCCCCCCCCCccCCCCccccccccccHHHHHHHHHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhhhHhcCCCCCC
Q 013596 64 PAPWQRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGG 143 (439)
Q Consensus 64 ~~~~~~~~~~~~~g~~GG~~vPe~l~~~l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g 143 (439)
++....||++|+||+|||+||||+||+.|+||+++|++.++|++|++|+..++++|+|+||||+++++|++.+ ++
T Consensus 3 ~~~~~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~g~pTPL~~~~~Ls~~~-----Gg 77 (402)
T PRK13028 3 SYLKSMPDADGFFGEYGGQFVPPELKPALDELEAAYEEIKKDPDFIAELRYLLKHYVGRPTPLYHAKRLSEEL-----GG 77 (402)
T ss_pred cccccCCCCCCCcCCcCCEeCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCCeeehHHhHhhc-----CC
Confidence 3455689999999999999999999999999999999999999999999999999999999999999999987 37
Q ss_pred CeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHH
Q 013596 144 PHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMR 223 (439)
Q Consensus 144 ~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~ 223 (439)
++||+|+|++|||||||+|+++++++.++++|++++|+++|+||||+|+|++|+++|++|+||||+.+++++..|+++|+
T Consensus 78 ~~IylK~EdlnptGS~K~r~al~~~l~A~~~G~~~vI~etgsGnhG~A~A~aaa~~Gl~~~I~m~~~d~~~q~~nv~~mr 157 (402)
T PRK13028 78 AQIYLKREDLNHTGAHKINNCLGQALLAKRMGKKRLIAETGAGQHGVATATAAALFGLECEIYMGEVDIERQHPNVFRMK 157 (402)
T ss_pred CeEEEEECCCCCCcchHHHHHHHHHHHHHHcCCCeEEEecCcHHHHHHHHHHHHHcCCCEEEEECCCcchhhHHHHHHHH
Confidence 89999999999999999999999999999999988888999999999999999999999999999987776778999999
Q ss_pred HcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEc
Q 013596 224 LLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIAC 303 (439)
Q Consensus 224 ~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvp 303 (439)
.+||+|+.++.+.++++++.++++++|.++.++.+|+++++.++|||+.+++++|.++|.|+.+|+.++.+..||+||+|
T Consensus 158 ~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~~q~tig~Ei~~Q~~~~~g~~pD~vV~~ 237 (402)
T PRK13028 158 LLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAREQFLEMTGRLPDAVVAC 237 (402)
T ss_pred HcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHHHhHHHHHHHHHHHHHhhCCCCCEEEEE
Confidence 99999999987667899999999888877656789999999999999989999999999999999988887789999999
Q ss_pred CCchHHHHHHHHHHhcCCCcEEEEEecCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCcccccccCCCCCC
Q 013596 304 VGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVG 383 (439)
Q Consensus 304 vG~GG~~aGi~~~~~~~p~vrvigVep~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg 383 (439)
||+|||++|++.+|+.+|++|||||||++.+.+.+.|+++|..|+++.+||.++|++|+.+|++...+||++||+++++|
T Consensus 238 VGgGg~~~Gi~~~f~~~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~g~~~~~l~~~~g~~~~~~sia~gl~~~~vg 317 (402)
T PRK13028 238 VGGGSNAIGLFSAFLDDESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIHGFKSYVLQDEDGEPAPVHSIAAGLDYPGVG 317 (402)
T ss_pred cCchHHHHHHHHHHHhCCCceEEEEecCCCCcccccccccccCCCcceecccceeeccccCCCcCCccceeccccCCCCC
Confidence 99999999999999977999999999999777778899999999999999999999999999999999999999999999
Q ss_pred CchhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHHHHHHhh
Q 013596 384 PEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVNCLHK 435 (439)
Q Consensus 384 ~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~Aal~~~ 435 (439)
|++..+.+..+++++.|+|+|+++|+++|+. .+||+.+++++.++|+++..
T Consensus 318 p~~~~l~~~~~~~~v~VtD~eal~a~~~La~-~eGIi~~~~sa~alA~a~~~ 368 (402)
T PRK13028 318 PEHAYLKDIGRVEYVTATDEEALDAFFLLSR-TEGIIPALESSHAVAYAIKL 368 (402)
T ss_pred HHHHHHHHhcCcEEEEECHHHHHHHHHHHHH-hcCCeeccHHHHHHHHHHHh
Confidence 9988888888899999999999999998864 45999999999999988753
No 5
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=5e-74 Score=556.15 Aligned_cols=415 Identities=56% Similarity=0.867 Sum_probs=382.1
Q ss_pred cccCCcccccccccccccccCCCCCccccccccCCCCC---CCCceeeeccCCCccccccCCCCCCCCCCCCCCCCccCC
Q 013596 3 VATGSSSCCKLAKPCAFTTSNSSQSPFKLKKFTASPAK---STSIRCTIARDPVVPMEAKKESDPAPWQRPDVFGRFGRF 79 (439)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (439)
|+-+.++|-+ -|-.++.+.+....++...++.+.+ +.+..|+++..++..| +...++..++.| .+||+|
T Consensus 8 v~~~v~~~~~---~s~lt~~rk~~~~~k~~~~~slr~~~~~~~t~~~sva~~p~~~~--~l~~d~~~~~~P---~r~gkf 79 (477)
T KOG1395|consen 8 VSPQVGDCQG---FSDLTLKRKSNQATKYSNGSSLRVKAALRFTHNKSVAEIPPQWY--NLVADLSVKPPP---PRFGKF 79 (477)
T ss_pred cccCCccccc---cCCcccccChhhhcccccCCccccccccccccCceeeeCCHHHH--hccCchhhcCCC---cccccc
Confidence 5556666654 4667777777777777766666555 4688999999999998 456777777776 999999
Q ss_pred CCccccccccccHHHHHHHHHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCch
Q 013596 80 GGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAH 159 (439)
Q Consensus 80 GG~~vPe~l~~~l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSf 159 (439)
||.||||.|+..|.||+..|.....|++||+++..+.+ |+||||||+++++|.+++. .+++||+|+|++||||||
T Consensus 80 gg~yvPE~L~h~l~ELek~f~~~~~d~df~ee~~eiy~-y~gRpspL~~AkRLte~~q----~ga~IylKrEdlnh~GsH 154 (477)
T KOG1395|consen 80 GGPYVPEALAHCLPELEKQFYTAERDEDFWEEFLEIYK-YLGRPSPLIRAKRLTEHCQ----TGARIYLKREDLNHTGSH 154 (477)
T ss_pred CCccChHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-HcCCCchhHHHHHHHHHhC----CCCEEEEEecCCCccccC
Confidence 99999999999999999999999999999999999876 9999999999999999993 489999999999999999
Q ss_pred hhhHHHHHHHHHHHhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCH
Q 013596 160 KINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATL 239 (439)
Q Consensus 160 K~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~ 239 (439)
|+++|+.+++.++++|++++|.++++|+||+|+|.+|+++|++|+|+|...+..++..|+.+||.+||+|+.+..|..++
T Consensus 155 KiNnav~QallakrlGkknviaETGAGQhGvatA~a~a~FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tL 234 (477)
T KOG1395|consen 155 KINNAVAQALLAKRLGKKNVIAETGAGQHGVATATACAKFGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTL 234 (477)
T ss_pred CcccHHHHHHHHHHhcccceeeccCCCccchHHHHHHHHhCCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHhc
Q 013596 240 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVN 319 (439)
Q Consensus 240 ~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~~ 319 (439)
+|+..++.+.|+.+.+.++|+++++.++|||+.+++.+|.+||.|+..|..|.++..||+||.|||||+|.+|++..|+.
T Consensus 235 rda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr~fhsvIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~ 314 (477)
T KOG1395|consen 235 RDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVRTFHSVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIR 314 (477)
T ss_pred hcccchhhhhhhhhhheeeeeecccCCCCCcHHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcEEEEEecCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEE
Q 013596 320 DKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYN 399 (439)
Q Consensus 320 ~p~vrvigVep~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~ 399 (439)
+..++.||||.++.+.++..|.++|+.|.+++.||.++|++||.+||+..+|+|+.||||||+||++.++++.++.+++.
T Consensus 315 dk~v~~igveaagdg~dtp~hsatltagd~Gv~hG~~ty~lq~~dGqi~~phsIsAGLdYpGvgPels~~k~~grae~is 394 (477)
T KOG1395|consen 315 DKSVGMIGVEAAGDGVDTPKHSATLTAGDVGVFHGVTTYVLQDTDGQIFDPHSISAGLDYPGVGPELSHLKETGRAEFIS 394 (477)
T ss_pred cchhheeeeeecccccCCcchhceeecccccccccceeeeeeccCCccccCCccccCCCCCCCChhHHHHHhcCceeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCHHHHHHHHHHHHHcCCceEEchhHHHHHHH
Q 013596 400 VTDDEALEGMKLYLILPFKLLSRHGGLWLLVN 431 (439)
Q Consensus 400 VsD~ea~~A~~~L~~~~~~l~~epagA~a~Aa 431 (439)
|+|+|+++++++|++.+ ||+--+...-|+++
T Consensus 395 itd~eclegfk~~srlE-GIIPAlEssHAva~ 425 (477)
T KOG1395|consen 395 ITDAECLEGFKQLSRLE-GIIPALESSHAVAG 425 (477)
T ss_pred cChHHHHHHHHHHHHhc-ccccCCchhhHHHH
Confidence 99999999999997665 88864444444443
No 6
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=2.3e-71 Score=596.74 Aligned_cols=360 Identities=54% Similarity=0.888 Sum_probs=329.8
Q ss_pred CCCCCccCCCCccccccccccHHHHHHHHHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhhhH----hcCCCCCCCeE
Q 013596 71 DVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEH----YRRPNGGGPHI 146 (439)
Q Consensus 71 ~~~~~~g~~GG~~vPe~l~~~l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~~~----l~~~~~~g~~I 146 (439)
-.+||||+|||+||||+||+.|+||+++|.+.++|++|++|+..++++|+|+||||+++++|++. + +++.+|
T Consensus 274 ~~~~~~g~~gg~~~pe~l~~~~~~l~~~~~~~~~~~~f~~e~~~~~~~~iGrpTPL~~~~~Ls~~l~~~~----G~g~~I 349 (695)
T PRK13802 274 HQGPYWGQFGGRYVPEALITALDELERVYTQAKADPEFHKELATLNQRYVGRPSPLTEAPRFAERVKEKT----GLDARV 349 (695)
T ss_pred CCCCCcCCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCceeEchhhhhhhHhhc----CCCceE
Confidence 34699999999999999999999999999999999999999999999999999999999998753 4 124899
Q ss_pred EEEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcC
Q 013596 147 YLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLG 226 (439)
Q Consensus 147 ylK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~G 226 (439)
|+|+|++|||||||||+++++++.+++.|++++|+++|+||||+|+|++|+++|++|+||||+.+..++..|+.+|+.||
T Consensus 350 ylK~E~lNpTGS~KdR~Al~~i~~A~~~G~~~~IvetssGNhG~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lG 429 (695)
T PRK13802 350 FLKREDLNHTGAHKINNALGQALLVKRMGKTRVIAETGAGQHGVATATVCAMLGLKCRIYMGQIDARRQALNVARMRMLG 429 (695)
T ss_pred EEEEccCCCcCCcHHHHHHHHHHHHHHcCCCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcC
Confidence 99999999999999999999999999999988999999999999999999999999999999976666788999999999
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhC-CCCCEEEEcCC
Q 013596 227 AEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWG-GKPDVLIACVG 305 (439)
Q Consensus 227 A~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g-~~~d~vvvpvG 305 (439)
|+|+.++.+..+++++++++.++|.++.++.+|+++|+.|+|||+.+++++|.++|.|+.+|+.+..+ ..||+||+|||
T Consensus 430 AeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VG 509 (695)
T PRK13802 430 AEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVG 509 (695)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCC
Confidence 99999986556889998888888877656678999999999999989999999999999999855434 26999999999
Q ss_pred chHHHHHHHHHHhcCCCcEEEEEecCCCCCCchhhhhhhh--cCCeeeeccchhhhccccCCCccCCcccccccCCCCCC
Q 013596 306 GGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLS--KGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVG 383 (439)
Q Consensus 306 ~GG~~aGi~~~~~~~p~vrvigVep~~s~~~~~~~~~sl~--~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg 383 (439)
+|||++|++.+|+.+|.+|||||||+++++....|..++. .|.++++||+++|.+++++||+.+.++|+.||+||++|
T Consensus 510 gGg~~~Gi~~~f~~~~~vkligVE~~g~g~~~g~h~~~~~~g~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gLdy~gvg 589 (695)
T PRK13802 510 GGSNAIGVMNAFLDDERVNLYGYEAGGNGPESGKHAIRFAPGTGELGMFQGAKSYLLENDEGQTLDTYSISAGLDYASVG 589 (695)
T ss_pred chHHHHHHHHHHHhCCCceEEEEEecCCCccccchhhhhhhccCCccccccceeecccCCCCCccCccccccccCCCCCC
Confidence 9999999999999889999999999999877777777776 48999999999999999999999999999999999999
Q ss_pred CchhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHHHHHHhh
Q 013596 384 PEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVNCLHK 435 (439)
Q Consensus 384 ~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~Aal~~~ 435 (439)
|++.++++..+.++++|+|+|+++|+++|+..+ ||+..++++.++|+++..
T Consensus 590 p~~~~l~~~~rv~~~~vtD~eal~a~~~La~~E-GIipa~eS~hAva~a~~~ 640 (695)
T PRK13802 590 PEHAWLKDIGRVNYSWATDEEAMNAFKDLCETE-GIIPAIESSHAVAGAYKA 640 (695)
T ss_pred chhHHHHhcCCeEEEEECHHHHHHHHHHHHHHc-CccccchHHHHHHHHHHH
Confidence 999999998888889999999999999997655 999999999999998764
No 7
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=4.1e-71 Score=595.01 Aligned_cols=361 Identities=58% Similarity=0.966 Sum_probs=336.6
Q ss_pred CCCCCCCCccCCCCccccccccccHHHHHHHHHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhhhHhcCCCCCCCeEE
Q 013596 68 QRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIY 147 (439)
Q Consensus 68 ~~~~~~~~~g~~GG~~vPe~l~~~l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~Iy 147 (439)
..||.+||||+|||+||||+||+.++||+++|++.++|++|++|++.++++|+|+||||+++++|++.+ |.+||
T Consensus 216 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grpTPL~~~~~Ls~~~------G~~Iy 289 (610)
T PRK13803 216 YLSDPAGRYGTFGGAYVPETLMANLQELQESYTKIIKSNEFQKTFKRLLQNYAGRPTPLTEAKRLSDIY------GARIY 289 (610)
T ss_pred hCCCCCCcccCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCcceeHHHHHHhh------CCEEE
Confidence 468999999999999999999999999999999999999999999999999999999999999999987 78999
Q ss_pred EEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCC
Q 013596 148 LKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGA 227 (439)
Q Consensus 148 lK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA 227 (439)
+|+|++|||||||+|+++++++.+++++++++|+++|+||||+|+|++|+++|++|+||||+.+.+++..|+.+|+.+||
T Consensus 290 lK~E~lnptGS~K~r~al~~~~~a~~~g~~~vi~e~gsGnhG~A~A~~aa~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA 369 (610)
T PRK13803 290 LKREDLNHTGSHKINNALGQALLAKRMGKTRIIAETGAGQHGVATATACALFGLKCTIFMGEEDIKRQALNVERMKLLGA 369 (610)
T ss_pred EEeCCCCCcccHHHHHHHHHHHHHHHcCCCEEEEecChHHHHHHHHHHHHHcCCcEEEEEeCCcccchhhHHHHHHHCCC
Confidence 99999999999999999999999999998888889999999999999999999999999999876667789999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCch
Q 013596 228 EVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGG 307 (439)
Q Consensus 228 ~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~G 307 (439)
+|+.++.+..+++++++++.++|..+.++.+|+++++.|+|||+.+++.+|.++|.|+.+|+.++.+..||+||+|||+|
T Consensus 370 ~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgG 449 (610)
T PRK13803 370 NVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQSVIGEEAKEQLKEQTGKLPDAIIACVGGG 449 (610)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHhhHHHHHHHHHHHHhhCCCCCEEEEEeCcC
Confidence 99999876678999988888888666667789999999999999889889999999999999777777799999999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEEecCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCcccccccCCCCCCCchh
Q 013596 308 SNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHS 387 (439)
Q Consensus 308 G~~aGi~~~~~~~p~vrvigVep~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~ 387 (439)
||++|++.+|+.+|++|||||||.+++++.+.|+++|..|+++++||..++++|+.+|++.+++||++||+++++|+.+.
T Consensus 450 g~~~Gi~~~f~~~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~sia~gl~~~gvg~~~~ 529 (610)
T PRK13803 450 SNAIGIFYHFLDDPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHGSMTYLMQDENGQILEPHSISAGLDYPGIGPMHA 529 (610)
T ss_pred HhHHHHHHHHhhCCCceEEEEecCCCCcccccccchhhcCCeeeeccceeeeecccCCcccCCceeeccCCCCCCCHHHH
Confidence 99999999998889999999999998777788999999999999999999999999999999999999999999999887
Q ss_pred hhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHHHHHHhh
Q 013596 388 FLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVNCLHK 435 (439)
Q Consensus 388 ~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~Aal~~~ 435 (439)
.+.+..+++++.|+|+|+++|+++|+.. .|++.++++|.++|+++..
T Consensus 530 ~~~~~~~~~~v~Vtd~ea~~a~~~La~~-eGi~~~~ssa~alA~~~~~ 576 (610)
T PRK13803 530 NLFETGRAIYTSVTDEEALDAFKLLAKL-EGIIPALESSHALAYLKEG 576 (610)
T ss_pred HHHhcCCeEEEEECHHHHHHHHHHHHHH-cCCccCcHHHHHHHHHHHh
Confidence 7777777899999999999999998654 4999999999999998863
No 8
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=5.7e-65 Score=521.68 Aligned_cols=356 Identities=63% Similarity=1.011 Sum_probs=317.1
Q ss_pred CCccCCCCccccccccccHHHHHHHHHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCC
Q 013596 74 GRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDL 153 (439)
Q Consensus 74 ~~~g~~GG~~vPe~l~~~l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~ 153 (439)
|+||+|||+|+||+++..|++|++.|.+.+.|++|+++++.++..|++++|||+++++|++.+ ++.+||+|+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~TPL~~~~~l~~~~-----g~~~iy~K~E~~ 75 (385)
T TIGR00263 1 GYFGDFGGQYVPETLMPALEELEAAFEDAKADPAFWAELNELLRNYAGRPTPLTFAPNLTEAL-----GGAKIYLKREDL 75 (385)
T ss_pred CCCCCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCceehHHHHHHh-----CCCeEEEEeCCC
Confidence 689999999999999999999999999999999999999999999999999999999999987 248999999999
Q ss_pred CCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEc
Q 013596 154 NHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (439)
Q Consensus 154 npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~ 233 (439)
|||||||+|++.+++..+++.|++.+|+++|+||||+|+|++|+++|++|+||||+.+.++...|+++|+.+||+|+.++
T Consensus 76 nptGS~K~R~a~~~~~~a~~~g~~~vi~e~ssGN~G~alA~~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~ 155 (385)
T TIGR00263 76 NHTGAHKINNALGQALLAKRMGKKRIIAETGAGQHGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVT 155 (385)
T ss_pred CCCccchHHHHHHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEEC
Confidence 99999999999999999988888878888999999999999999999999999998644334468899999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHH
Q 013596 234 SGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGL 313 (439)
Q Consensus 234 ~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi 313 (439)
.+.+.++++++++.+++.++.++.+|+.+|+.|+|||+.++..++.++|.|+.+|+.++.+..||+||+|||+||+++|+
T Consensus 156 ~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv 235 (385)
T TIGR00263 156 SGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGI 235 (385)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHHHHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHH
Confidence 64456888877777766665455678889999999998777789999999999998654444689999999999999999
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcC
Q 013596 314 FHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEG 393 (439)
Q Consensus 314 ~~~~~~~p~vrvigVep~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~ 393 (439)
+.+++..|++|||||||+++...++.+..++..|.++..++...+.+++.++++...+||++||+++++++....+.+..
T Consensus 236 ~~~~~~~~~~~iigVe~~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~tia~gl~~~~~~p~~~~~~~~~ 315 (385)
T TIGR00263 236 FYAFIDDPSVQLIGVEAGGLGIDTDKHAATLAKGSPGVLHGMKTYLLQDEDGQILEAHSVSAGLDYPGVGPEHAYLHETG 315 (385)
T ss_pred HHHHhhCCCCeEEEEEeCCCcccchhhhhhhhcCCeeEecCcccccccCCCCcccccceeeccccCCCCCHHHHHHHhcC
Confidence 99887789999999999998666667888999999988889899999988888888999999999999998876667767
Q ss_pred CcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHHHHHHhh
Q 013596 394 RAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVNCLHK 435 (439)
Q Consensus 394 ~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~Aal~~~ 435 (439)
++++++|+|+|+++++++|+. +++++++|++++++|+++..
T Consensus 316 ~~~~v~Vsd~e~~~a~~~la~-~egi~~~~ssaaalaa~~~~ 356 (385)
T TIGR00263 316 RATYEAITDDEALEAFKLLSR-NEGIIPALESSHALAHLEKI 356 (385)
T ss_pred CeEEEEECHHHHHHHHHHHHH-hcCCeechHHHHHHHHHHHH
Confidence 889999999999999999864 45999999999999998864
No 9
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-56 Score=442.87 Aligned_cols=292 Identities=25% Similarity=0.308 Sum_probs=252.1
Q ss_pred cccccHHHHHHHHHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHH
Q 013596 87 TLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVG 166 (439)
Q Consensus 87 ~l~~~l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~ 166 (439)
.+++++++|..|+.+ +++++ ++|||++++.|++++ +++||||+|++||+||||.|||+|
T Consensus 4 ~~~~~~~~i~~A~~r--------------i~~~~-~~TPL~~s~~Ls~~~------g~~v~lK~E~lQ~~gSFK~RGA~n 62 (347)
T COG1171 4 LLPVSLADILAAAAR--------------LKGVV-NPTPLQRSPSLSERL------GAEIYLKRENLQPVGSFKIRGAYN 62 (347)
T ss_pred cccccHHHHHHHHHH--------------HhCcc-cCCCcccchhhHHhh------CceEEEeeccCcccccchhhhHHH
Confidence 456789999999884 88888 789999999999997 999999999999999999999999
Q ss_pred HHHHHHHh-CCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHH
Q 013596 167 QALLAKRL-GKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSE 245 (439)
Q Consensus 167 ~~~~a~~~-g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~ 245 (439)
.+..+.+. .+++.|+++|+||||+++|++|+++|++++||||+++ ++.|++.++.|||||+.++. +|+|+...
T Consensus 63 ~i~~Ls~e~~~~~gViaaSaGNHaQGvA~aa~~lGi~a~IvMP~~t---p~~Kv~a~r~~GaeVil~g~---~~dda~~~ 136 (347)
T COG1171 63 KLSSLSEEEERAAGVIAASAGNHAQGVAYAAKRLGIKATIVMPETT---PKIKVDATRGYGAEVILHGD---NFDDAYAA 136 (347)
T ss_pred HHHhcChhhhhcCceEEecCCcHHHHHHHHHHHhCCCEEEEecCCC---cHHHHHHHHhcCCEEEEECC---CHHHHHHH
Confidence 99887643 5667889999999999999999999999999999988 67899999999999999864 68999888
Q ss_pred HHHHHHHccCCceEEecccCCCCCcch-hhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCc
Q 013596 246 AIRDWVTNVETTHYILGSVAGPHPYPM-MVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDV 323 (439)
Q Consensus 246 a~~~~~~~~~~~~y~~~s~~~~~p~~~-~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~v 323 (439)
+.+. .+..+..| +|||++ +|++||+|+|.|+.+|+ +..||+||||+||||+++|++.+++ ..|++
T Consensus 137 a~~~--a~~~G~~~-------i~pfD~p~viAGQGTi~lEileq~----~~~~d~v~vpvGGGGLisGia~~~k~~~p~~ 203 (347)
T COG1171 137 AEEL--AEEEGLTF-------VPPFDDPDVIAGQGTIALEILEQL----PDLPDAVFVPVGGGGLISGIATALKALSPEI 203 (347)
T ss_pred HHHH--HHHcCCEE-------eCCCCCcceeecccHHHHHHHHhc----cccCCEEEEecCccHHHHHHHHHHHHhCCCC
Confidence 7663 22334444 499975 78899999999998776 3336999999999999999999998 78999
Q ss_pred EEEEEecCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHH
Q 013596 324 RLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDD 403 (439)
Q Consensus 324 rvigVep~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ 403 (439)
|||||||+++ +.+++||..|+.... .....||+||+.+..+|.....+.+.++|++++|+|+
T Consensus 204 ~vIGVEp~~a----~~~~~Sl~~G~~~~~--------------~~~~~tiaDG~av~~~g~~tf~i~~~~vd~~v~V~e~ 265 (347)
T COG1171 204 KVIGVEPEGA----PSMYASLKAGKIVVV--------------LPDVGTIADGLAVKRPGDLTFEILRELVDDIVLVDED 265 (347)
T ss_pred eEEEEeeCCC----hHHHHHHHcCCceee--------------cCCCCccccccccCCCCHHHHHHHHHcCCcEEEECHH
Confidence 9999999999 789999999954431 2237899999999999987544555578999999999
Q ss_pred HHHHHHHHHHHcCCceEEchhHHHHHHHHHhhhh
Q 013596 404 EALEGMKLYLILPFKLLSRHGGLWLLVNCLHKLI 437 (439)
Q Consensus 404 ea~~A~~~L~~~~~~l~~epagA~a~Aal~~~~~ 437 (439)
|+.++|++| +++.++++||+||+++|+++....
T Consensus 266 ei~~am~~l-~~~~~iI~EpaGAlalAal~~~~~ 298 (347)
T COG1171 266 EICAAMRDL-FERTKIIAEPAGALALAALLAGKI 298 (347)
T ss_pred HHHHHHHHH-HhcCCeeccccHHHHHHHHHhhhh
Confidence 999999988 566799999999999999987643
No 10
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=1.1e-51 Score=421.24 Aligned_cols=340 Identities=67% Similarity=1.041 Sum_probs=279.2
Q ss_pred cHHHHHHHHHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHH
Q 013596 91 ALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALL 170 (439)
Q Consensus 91 ~l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~ 170 (439)
.|++|++.+..-.-|+.|++.++.+++++++++|||+++++|++.+ ++.+||+|+|++|||||||+|++++++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TPL~~l~~l~~~~-----g~~~l~~K~E~~nptgS~K~R~a~~~~~~ 76 (365)
T cd06446 2 ALEELEQEFSKERYDPDFPEELRELYKDYVGRPTPLYRAKRLSEYL-----GGAKIYLKREDLNHTGAHKINNALGQALL 76 (365)
T ss_pred hHHHHHHHHHHhhcCcccHHHHHHHhhccCCCCCCceehHHHHHhh-----CCceEEEEeccCCCccchhHHHHHHHHHH
Confidence 5889999999999999999999999999988899999999999877 37899999999999999999999999998
Q ss_pred HHHhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 013596 171 AKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (439)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (439)
+.+.|.+.+|+++|+||||+|+|++|+.+|++|+||||+.+.++...|+.+|+.+||+|+.++...++++++..++.+.+
T Consensus 77 a~~~g~~~vv~~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~ 156 (365)
T cd06446 77 AKRMGKKRVIAETGAGQHGVATATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDW 156 (365)
T ss_pred HHHcCCCeEEEecCchHHHHHHHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHH
Confidence 98888887777689999999999999999999999999865433456888999999999999854345677766666654
Q ss_pred HHccCCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHhcCCCcEEEEEec
Q 013596 251 VTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEA 330 (439)
Q Consensus 251 ~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~~~p~vrvigVep 330 (439)
.++.++..|+++++.+++|++..++.++.++|+|+.+|+.+..+..||+||+|+|+||+++|++.+++..+++|||||||
T Consensus 157 ~~~~~~~~y~~~~~~~~~~~~~~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~~~~~~vigVep 236 (365)
T cd06446 157 VTNVEDTHYLLGSVVGPHPYPNMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFINDKDVKLIGVEA 236 (365)
T ss_pred HhccCCceEecccccCCCCchHHHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHhCCCceEEEEcC
Confidence 44433457777887777888777889999999999999854433469999999999999999999887677999999999
Q ss_pred CCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHHHHH
Q 013596 331 AGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMK 410 (439)
Q Consensus 331 ~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~A~~ 410 (439)
+++......+..++..|+...+++...+...+..++...++|+++||+++.+++....+.+.+.++++.|+|+|++++++
T Consensus 237 ~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~r 316 (365)
T cd06446 237 GGCGLETGGHAAYLFGGTAGVLHGLKMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSGRVEYVAVTDEEALEAFK 316 (365)
T ss_pred CCCccccccceeeccCCCcceecchhhhccccccCCCCCcccccccccCCCCCHHHHHHHHhCCceEEEeChHHHHHHHH
Confidence 99853222223567778776665554443332224556778999999988777775556666789999999999999999
Q ss_pred HHHHcCCceEEchhHHHHHHHHHhhh
Q 013596 411 LYLILPFKLLSRHGGLWLLVNCLHKL 436 (439)
Q Consensus 411 ~L~~~~~~l~~epagA~a~Aal~~~~ 436 (439)
+|+ +++|++++|+++.++|+++...
T Consensus 317 ~la-~~eGi~~epssgaalAa~~~~~ 341 (365)
T cd06446 317 LLA-RTEGIIPALESSHAIAYAIKLA 341 (365)
T ss_pred HHH-HhcCceeCccchHHHHHHHHHH
Confidence 885 4459999999999999998653
No 11
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-52 Score=388.92 Aligned_cols=285 Identities=22% Similarity=0.333 Sum_probs=245.6
Q ss_pred cccHHHHHHHHHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHH
Q 013596 89 MYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 168 (439)
Q Consensus 89 ~~~l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~ 168 (439)
.++++|+++|+.+ |++|+ +.||++.++.|.+.. |.++|+|+|++|.|||||.|||+|.+
T Consensus 6 ~~t~~dv~~A~~r--------------ik~~i-hkTpVlTS~~ln~~~------g~~vfFKcE~fQKtGaFKfRGAlNav 64 (323)
T KOG1251|consen 6 KITYEDVRAAHQR--------------IKPFI-HKTPVLTSENLNEKV------GRHVFFKCENFQKTGAFKFRGALNAV 64 (323)
T ss_pred cCCHHHHHHHHHH--------------HHhhh-ccCceechhhHHHHh------hhheEeehhhhhhccceehhhhHHHH
Confidence 4678999999884 99999 789999999999987 89999999999999999999999999
Q ss_pred HHHHHhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHH
Q 013596 169 LLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIR 248 (439)
Q Consensus 169 ~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~ 248 (439)
..+..+.+.+.|++.||||||+|+|++|+.+|++|+||||+++ +..|+..++.|||+|+.+++. .+..+...+
T Consensus 65 ~~l~~ek~~kgvithSSGNHaqAlalaAk~~giPa~IVvP~~A---P~~Kv~a~~~Yga~ii~~e~~----~~sRE~va~ 137 (323)
T KOG1251|consen 65 SSLKAEKRAKGVITHSSGNHAQALALAAKILGIPATIVVPKDA---PICKVAATRGYGANIIFCEPT----VESRESVAK 137 (323)
T ss_pred HHhhHhhhcCceEeecCCcHHHHHHHHHHhcCCCeEEEecCCC---hHHHHHHHHhcCceEEEecCc----cchHHHHHH
Confidence 8888655566788999999999999999999999999999988 678999999999999999873 223333334
Q ss_pred HHHHccCCceEEecccCCCCCcch-hhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEE
Q 013596 249 DWVTNVETTHYILGSVAGPHPYPM-MVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLI 326 (439)
Q Consensus 249 ~~~~~~~~~~y~~~s~~~~~p~~~-~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvi 326 (439)
++.+ +..+|+ +|||+. -++.||+++++|+.+|+ + .+|.+|||+||||+++|++.+.+ ..|+++|+
T Consensus 138 ~lte--e~g~~~------i~Py~~p~vIaGqgTiA~ElleqV----g-~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy 204 (323)
T KOG1251|consen 138 DLTE--ETGYYL------IHPYNHPSVIAGQGTIALELLEQV----G-EIDALFVPVGGGGLLSGVALAAKSLKPSIEVY 204 (323)
T ss_pred HHHH--hcCcEE------eCCCCCcceeeccchHHHHHHHhh----C-ccceEEEeecCcchhhHHHHHHhccCCCcEEE
Confidence 4332 234555 588875 56789999999987765 5 68999999999999999999988 78999999
Q ss_pred EEecCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCcccccccCCCCCCCc-hhhhhhcCCcEEEEeCHHHH
Q 013596 327 GVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPE-HSFLKDEGRAEYYNVTDDEA 405 (439)
Q Consensus 327 gVep~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~-~~~l~~~~~~~~v~VsD~ea 405 (439)
+|||++. ++-.+++..|+... +..+.||+||+.+..+|+. ++.+++. +|++++|+|+|+
T Consensus 205 ~veP~~a----~d~~qsf~~g~I~~---------------l~tp~TIADG~r~~~lG~~t~pIir~~-vddi~Tv~e~Ei 264 (323)
T KOG1251|consen 205 AVEPEAA----DDGQQSFLKGKIVH---------------LDTPKTIADGVRTSHLGPLTWPIIRDL-VDDILTVSEDEI 264 (323)
T ss_pred EecCccc----chHHHHHhcCCeEe---------------cCCchhhhhhhhhccccccchHHHHHH-hhhheeecHHHH
Confidence 9999998 78889999998764 3458999999998889986 5667664 899999999999
Q ss_pred HHHHHHHHHcCCceEEchhHHHHHHHHHhh
Q 013596 406 LEGMKLYLILPFKLLSRHGGLWLLVNCLHK 435 (439)
Q Consensus 406 ~~A~~~L~~~~~~l~~epagA~a~Aal~~~ 435 (439)
.++++.+ |+++++++||.++.++|+++..
T Consensus 265 ~~~lk~~-~ermK~~vEPTa~lgfAavl~~ 293 (323)
T KOG1251|consen 265 KEALKLI-WERMKVVVEPTAALGFAAVLSH 293 (323)
T ss_pred HHHHHHH-HHHHheeeccchhHHHHHHHhh
Confidence 9999955 9999999999999999998764
No 12
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=1.4e-50 Score=416.93 Aligned_cols=284 Identities=23% Similarity=0.318 Sum_probs=237.9
Q ss_pred ccHHHHHHHHHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHH
Q 013596 90 YALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQAL 169 (439)
Q Consensus 90 ~~l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~ 169 (439)
.+++||.+|+++ +.++++ +|||+++++|++.+ +.+||+|+|++|||||||+|++.+.+.
T Consensus 2 ~~~~~i~~a~~~--------------i~~~i~-~TPl~~~~~Ls~~~------g~~iylK~E~lqptGSfK~RgA~n~i~ 60 (403)
T PRK08526 2 LELNKIYQAKQR--------------ISGFVN-KTPFAYAPFLSKIS------GAEVYLKKENLQITGAYKIRGAYNKIA 60 (403)
T ss_pred CCHHHHHHHHHH--------------HhCcCC-CCCccchHHHHHHh------CCeEEEEecCCCCCCCCHHHHHHHHHH
Confidence 578899999884 788884 89999999999987 789999999999999999999999998
Q ss_pred HHHHhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHH
Q 013596 170 LAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (439)
Q Consensus 170 ~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~ 249 (439)
.+.+.++.+.|+++|+||||+++|++|+++|++|+||||+.. +..|+++|+.|||+|+.++. +++++...+.+.
T Consensus 61 ~l~~~~~~~gVV~aSaGNhg~avA~aa~~~Gi~~~IvmP~~~---p~~k~~~~r~~GA~Vv~~g~---~~~~a~~~a~~~ 134 (403)
T PRK08526 61 NLSEEQKQHGVIAASAGNHAQGVAISAKKFGIKAVIVMPEAT---PLLKVSGTKALGAEVILKGD---NYDEAYAFALEY 134 (403)
T ss_pred hccHhhcCCEEEEECccHHHHHHHHHHHHcCCCEEEEEcCCC---CHHHHHHHHhCCCEEEEECC---CHHHHHHHHHHH
Confidence 777655556788999999999999999999999999999986 56788999999999999863 688888877653
Q ss_pred HHHccCCceEEecccCCCCCcch-hhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEE
Q 013596 250 WVTNVETTHYILGSVAGPHPYPM-MVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIG 327 (439)
Q Consensus 250 ~~~~~~~~~y~~~s~~~~~p~~~-~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvig 327 (439)
.++ .+ .+++ |||++ .++.||+++|.|+.+|+ + .+|+||+|+|+||+++|++.+++ .+|++||||
T Consensus 135 -a~~-~g-~~~v------~p~~~~~~i~G~gtia~EI~eq~----~-~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvig 200 (403)
T PRK08526 135 -AKE-NN-LTFI------HPFEDEEVMAGQGTIALEMLDEI----S-DLDMVVVPVGGGGLISGIASAAKQINPNIKIIG 200 (403)
T ss_pred -HHh-cC-CEee------CCCCCHHHHhhhHHHHHHHHHhc----C-CCCEEEEecChHHHHHHHHHHHHHhCCCCEEEE
Confidence 332 33 3443 66643 56789999999987775 3 58999999999999999999998 689999999
Q ss_pred EecCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHH
Q 013596 328 VEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALE 407 (439)
Q Consensus 328 Vep~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~ 407 (439)
|||+++ ..+..++..|++.. .....|+++|++++.+++....+....+|++++|+|+|+.+
T Consensus 201 Vep~~~----~~~~~s~~~g~~~~---------------~~~~~tiadgiav~~~~~~~~~~~~~~vd~~v~V~d~ei~~ 261 (403)
T PRK08526 201 VGAKGA----PAMYESFHAKKIIN---------------SKSVRTIADGIAVRDASPINLAIILECVDDFVQVDDEEIAN 261 (403)
T ss_pred EEECCC----ChHHHHHHcCCccc---------------CCCCCceeccccCCCCCHHHHHHHHHhCCEEEEECHHHHHH
Confidence 999998 45777888887653 22367999999987777653333334679999999999999
Q ss_pred HHHHHHHcCCceEEchhHHHHHHHHHh
Q 013596 408 GMKLYLILPFKLLSRHGGLWLLVNCLH 434 (439)
Q Consensus 408 A~~~L~~~~~~l~~epagA~a~Aal~~ 434 (439)
|+++|+ ++.++++||++|+++|+++.
T Consensus 262 A~~~l~-~~~gi~ve~aga~~lAall~ 287 (403)
T PRK08526 262 AILFLL-EKQKIVVEGAGAASVAALLH 287 (403)
T ss_pred HHHHHH-HhcCcEeeHHHHHHHHHHHh
Confidence 999885 55599999999999999984
No 13
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=6.8e-50 Score=421.42 Aligned_cols=280 Identities=25% Similarity=0.270 Sum_probs=235.4
Q ss_pred HHHHHHHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHH
Q 013596 110 EELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHG 189 (439)
Q Consensus 110 ~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG 189 (439)
.++..+|.+.+ .+|||+++++|++.+ |.+||+|+|++|||||||+|||++.+..+.+....+.|+++|+||||
T Consensus 25 ~~~~~~i~~~v-~~TPL~~~~~Ls~~~------g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~~~GVV~aSaGNha 97 (521)
T PRK12483 25 KILAARVYDVA-RETPLQRAPNLSARL------GNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQLARGVITASAGNHA 97 (521)
T ss_pred HHHHHHHhhhc-CCCCeeEchhhhHhh------CCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHhcCcEEEECCCHHH
Confidence 46777899998 479999999999987 78999999999999999999999999876644444568899999999
Q ss_pred HHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCC
Q 013596 190 VATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHP 269 (439)
Q Consensus 190 ~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p 269 (439)
+++|++|+.+|++|+||||+.. +..|+++++.|||+|+.++ ++++++.+.+.+. .++ .+ .+++ ||
T Consensus 98 ~gvA~aA~~lGi~~~IvmP~~t---p~~Kv~~~r~~GAeVil~g---~~~d~a~~~A~~l-a~e-~g-~~~v------~p 162 (521)
T PRK12483 98 QGVALAAARLGVKAVIVMPRTT---PQLKVDGVRAHGGEVVLHG---ESFPDALAHALKL-AEE-EG-LTFV------PP 162 (521)
T ss_pred HHHHHHHHHhCCCEEEEECCCC---CHHHHHHHHHCCCEEEEEC---CCHHHHHHHHHHH-HHh-cC-Ceee------CC
Confidence 9999999999999999999987 5679999999999999986 3688998887664 222 23 3443 66
Q ss_pred cch-hhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEEEecCCCCCCchhhhhhhhcC
Q 013596 270 YPM-MVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKG 347 (439)
Q Consensus 270 ~~~-~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVep~~s~~~~~~~~~sl~~G 347 (439)
|++ .++.||+++|.|+.+|+ +..+|+||+|+||||+++|++.++| .+|++|||||||+++ ..+..++..|
T Consensus 163 fdd~~viaGqgTig~EI~eQ~----~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a----~~~~~sl~~g 234 (521)
T PRK12483 163 FDDPDVIAGQGTVAMEILRQH----PGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDS----NCLQAALAAG 234 (521)
T ss_pred CCChHHHHHHHHHHHHHHHHh----CCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCC----chhhHHHhcC
Confidence 643 56789999999987775 4359999999999999999999998 689999999999998 5677888888
Q ss_pred CeeeeccchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHH
Q 013596 348 EVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLW 427 (439)
Q Consensus 348 ~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~ 427 (439)
++..+ ....|+++|+.++.+|+....+.+.++|++++|+|+|+.+|+++|+ ++.++++||++|+
T Consensus 235 ~~~~~---------------~~~~t~adGiav~~~g~~~~~~~~~~vd~vv~Vse~ei~~ai~~l~-~~~~i~vEpagAa 298 (521)
T PRK12483 235 ERVVL---------------GQVGLFADGVAVAQIGEHTFELCRHYVDEVVTVSTDELCAAIKDIY-DDTRSITEPAGAL 298 (521)
T ss_pred CcccC---------------CCCCceeceeccCCCCHHHHHHHHHhCCEEEEECHHHHHHHHHHHH-HhCCcEEeHHHHH
Confidence 87542 2367999999987777664334455789999999999999999885 5569999999999
Q ss_pred HHHHHHhh
Q 013596 428 LLVNCLHK 435 (439)
Q Consensus 428 a~Aal~~~ 435 (439)
++||++..
T Consensus 299 alAal~~~ 306 (521)
T PRK12483 299 AVAGIKKY 306 (521)
T ss_pred HHHHHHHH
Confidence 99999875
No 14
>PLN02970 serine racemase
Probab=100.00 E-value=3.9e-49 Score=396.99 Aligned_cols=287 Identities=19% Similarity=0.232 Sum_probs=234.7
Q ss_pred ccccHHHHHHHHHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHH
Q 013596 88 LMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 167 (439)
Q Consensus 88 l~~~l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~ 167 (439)
+..++++|++++.. +.++++ +|||+++++|++.+ +.+||+|+|++|||||||||++.++
T Consensus 7 ~~~~~~~i~~a~~~--------------i~~~i~-~TPL~~~~~l~~~~------g~~i~~K~E~~nptGSfKdRga~~~ 65 (328)
T PLN02970 7 YAADLSSIREARKR--------------IAPFIH-RTPVLTSSSLDALA------GRSLFFKCECFQKGGAFKFRGACNA 65 (328)
T ss_pred CCcCHHHHHHHHHH--------------HhCcCC-CCCeeechhhHHhh------CCeEEEEecCCCCCCCcHHHHHHHH
Confidence 34468899988874 778886 79999999999887 7899999999999999999999999
Q ss_pred HHHHHHhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHH
Q 013596 168 ALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAI 247 (439)
Q Consensus 168 ~~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~ 247 (439)
+..+.+.+..+.|+++|+||||+|+|++|+.+|++|+||||+.. ++.|++.|+.|||+|+.++. +++++.+.+.
T Consensus 66 i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~---~~~k~~~~~~~GA~Vi~~~~---~~~~~~~~a~ 139 (328)
T PLN02970 66 IFSLSDDQAEKGVVTHSSGNHAAALALAAKLRGIPAYIVVPKNA---PACKVDAVIRYGGIITWCEP---TVESREAVAA 139 (328)
T ss_pred HHHhhHhhcCCeEEEECCcHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHhcCCEEEEeCC---CHHHHHHHHH
Confidence 98887555455788999999999999999999999999999976 46788899999999999974 4666655544
Q ss_pred HHHHHccCCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEE
Q 013596 248 RDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLI 326 (439)
Q Consensus 248 ~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvi 326 (439)
+ +.++ ...|++++++|+.+ ..+|.++|.|+.+|+ + .||+||+|+|+||+++|++.+++ .+|++|||
T Consensus 140 ~-la~~--~g~~~~~~~~n~~~-----~~g~~t~g~Ei~~ql----~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi 206 (328)
T PLN02970 140 R-VQQE--TGAVLIHPYNDGRV-----ISGQGTIALEFLEQV----P-ELDVIIVPISGGGLISGIALAAKAIKPSIKII 206 (328)
T ss_pred H-HHHh--cCCEEeCCCCCcch-----hhehHHHHHHHHHhc----c-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEE
Confidence 3 3332 34666777755442 268889999987776 3 49999999999999999999998 68999999
Q ss_pred EEecCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCcccccccCCCCCCCc-hhhhhhcCCcEEEEeCHHHH
Q 013596 327 GVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPE-HSFLKDEGRAEYYNVTDDEA 405 (439)
Q Consensus 327 gVep~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~-~~~l~~~~~~~~v~VsD~ea 405 (439)
+|||+++ +.+..++..|++.. ...+.|+++||+++ +++. +..+ +..++++++|+|+|+
T Consensus 207 ~Vep~~~----~~~~~s~~~g~~~~---------------~~~~~tia~gl~~~-~~~~~~~~~-~~~~d~~v~V~d~e~ 265 (328)
T PLN02970 207 AAEPKGA----DDAAQSKAAGEIIT---------------LPVTNTIADGLRAS-LGDLTWPVV-RDLVDDVITVDDKEI 265 (328)
T ss_pred EEEECCC----cHHHHHHHcCCcee---------------CCCCCCccccccCC-cCHHHHHHH-HhhCCEEEEECHHHH
Confidence 9999998 56788888887643 12367899999864 5554 3344 445799999999999
Q ss_pred HHHHHHHHHcCCceEEchhHHHHHHHHHhhh
Q 013596 406 LEGMKLYLILPFKLLSRHGGLWLLVNCLHKL 436 (439)
Q Consensus 406 ~~A~~~L~~~~~~l~~epagA~a~Aal~~~~ 436 (439)
++++++|+. +.++++||++++++|+++...
T Consensus 266 ~~a~~~la~-~~gi~ve~s~aa~laaa~~~~ 295 (328)
T PLN02970 266 IEAMKLCYE-RLKVVVEPSGAIGLAAALSDS 295 (328)
T ss_pred HHHHHHHHH-hcCcEEeHHHHHHHHHHHhCc
Confidence 999999864 459999999999999987643
No 15
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=5.1e-49 Score=406.77 Aligned_cols=288 Identities=24% Similarity=0.306 Sum_probs=239.6
Q ss_pred ccccHHHHHHHHHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHH
Q 013596 88 LMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 167 (439)
Q Consensus 88 l~~~l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~ 167 (439)
++.++++|.+|+++ +.++++ +|||+++++|++.+ +.+||+|+|++|||||||+|++.++
T Consensus 2 ~~~~~~~i~~a~~~--------------i~~~i~-~TPl~~~~~ls~~~------g~~i~~K~E~~nptGS~K~R~a~~~ 60 (404)
T PRK08198 2 MMLTLDDIEEARER--------------LKGVVR-RTPLEYSRTLSELT------GAEVYLKCENLQRTGSFKIRGAYNK 60 (404)
T ss_pred CCCCHHHHHHHHHH--------------HhccCC-CCCceehhhHHHHh------CCEEEEEECCCCCCCCCHHHHHHHH
Confidence 34678999999884 788885 79999999999987 7899999999999999999999999
Q ss_pred HHHHHHhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHH
Q 013596 168 ALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAI 247 (439)
Q Consensus 168 ~~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~ 247 (439)
+..+.+.+..+.|+++|+||||+++|++|+.+|++|+||||+.. +..|+++|+.|||+|+.++. +++++.+.+.
T Consensus 61 i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~---~~~k~~~~~~~GA~Vi~~~~---~~~~~~~~a~ 134 (404)
T PRK08198 61 IASLSEEERARGVVAASAGNHAQGVAYAASLLGIKATIVMPETA---PLSKVKATRSYGAEVVLHGD---VYDEALAKAQ 134 (404)
T ss_pred HHhccHhhcCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHhCCCEEEEECC---CHHHHHHHHH
Confidence 98887555566789999999999999999999999999999976 56789999999999999863 5888887766
Q ss_pred HHHHHccCCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEE
Q 013596 248 RDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLI 326 (439)
Q Consensus 248 ~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvi 326 (439)
+. .++ . ..|++++++|++ +..+|.++|.|+.+|+ + .+|+||+|+|+||+++|++.+++ .+|++|||
T Consensus 135 ~~-~~~-~-g~~~~~~~~~~~-----~~~g~~t~a~EI~~q~----~-~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kii 201 (404)
T PRK08198 135 EL-AEE-T-GATFVHPFDDPD-----VIAGQGTIGLEILEDL----P-DVDTVVVPIGGGGLISGVATAVKALRPEVRVI 201 (404)
T ss_pred HH-HHh-c-CCEecCCCCCcc-----HHHHHHHHHHHHHHhC----C-CCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEE
Confidence 53 332 2 345655554332 3478999999987765 4 58999999999999999999998 78999999
Q ss_pred EEecCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHH
Q 013596 327 GVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEAL 406 (439)
Q Consensus 327 gVep~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~ 406 (439)
||||+++ ..+..++..|++... ....|+++|+.++.++.....+.+..+|++++|+|+|++
T Consensus 202 gVe~~~~----~~~~~~~~~g~~~~~---------------~~~~t~a~g~~v~~~~~~~~~~~~~~~d~~v~V~d~e~~ 262 (404)
T PRK08198 202 GVQAEGA----PAMPESLAAGRPVEL---------------ESVDTIADGIAVKRPGDLTFEIIRELVDDVVTVSDEEIA 262 (404)
T ss_pred EEEeCCC----hHHHHHHHcCCCEec---------------CCCCccccccccCCcCHHHHHHHHHhCCEEEEECHHHHH
Confidence 9999998 567888888887642 236789999987666654333445578999999999999
Q ss_pred HHHHHHHHcCCceEEchhHHHHHHHHHhh
Q 013596 407 EGMKLYLILPFKLLSRHGGLWLLVNCLHK 435 (439)
Q Consensus 407 ~A~~~L~~~~~~l~~epagA~a~Aal~~~ 435 (439)
+|+++|+ ++.++++||++|+++|+++..
T Consensus 263 ~a~~~l~-~~~g~~~e~sga~~lAal~~~ 290 (404)
T PRK08198 263 RAILLLL-ERAKLVVEGAGAVSVAALLSG 290 (404)
T ss_pred HHHHHHH-HhcCeEEehHHHHHHHHHHhc
Confidence 9999886 455999999999999998864
No 16
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=2.8e-49 Score=410.19 Aligned_cols=290 Identities=21% Similarity=0.271 Sum_probs=236.4
Q ss_pred cccHHHHHHHHHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHH
Q 013596 89 MYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 168 (439)
Q Consensus 89 ~~~l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~ 168 (439)
+.+++||++|+.+ +.++++ +|||+++++|++.+ +.+||+|+|++|||||||+|+|.+.+
T Consensus 6 ~~~~~~i~~a~~~--------------i~~~i~-~TPl~~~~~ls~~~------g~~l~~K~E~~~ptGSfK~RgA~~~i 64 (420)
T PRK08639 6 TVSAKDIDKAAKR--------------LKDVVP-ETPLQRNDYLSEKY------GANVYLKREDLQPVRSYKLRGAYNAI 64 (420)
T ss_pred CCCHHHHHHHHHH--------------HhCcCc-CCCccchHHHHHHh------CCEEEEEecCCCCCCCcHHHHHHHHH
Confidence 3578999999885 788885 79999999999887 78999999999999999999999999
Q ss_pred HHHHHhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHH
Q 013596 169 LLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIR 248 (439)
Q Consensus 169 ~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~ 248 (439)
..+.+....+.|+++|+||||+++|++|+++|++|+||||+.. ++.|+++++.|||+|+.+....++++++.+.+.+
T Consensus 65 ~~l~~~~~~~~Vv~aSsGN~g~alA~~a~~~G~~~~IvmP~~~---~~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~ 141 (420)
T PRK08639 65 SQLSDEELAAGVVCASAGNHAQGVAYACRHLGIPGVIFMPVTT---PQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQE 141 (420)
T ss_pred HhCCHHhhCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCC---hHHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHH
Confidence 8754333346789999999999999999999999999999976 5678999999999754432212468888887766
Q ss_pred HHHHccCCceEEecccCCCCCcch-hhhhhhHHhHHHHHHHHHHHhCCC--CCEEEEcCCchHHHHHHHHHHh-cCCCcE
Q 013596 249 DWVTNVETTHYILGSVAGPHPYPM-MVRDFHAVIGKETRRQALEKWGGK--PDVLIACVGGGSNAMGLFHEFV-NDKDVR 324 (439)
Q Consensus 249 ~~~~~~~~~~y~~~s~~~~~p~~~-~v~~g~~~ig~E~~~Qi~e~~g~~--~d~vvvpvG~GG~~aGi~~~~~-~~p~vr 324 (439)
. .++ .+ .|++ |||++ .++.+|.++|.|+.+|+ +.. ||+||+|+|+||+++|++.+++ .+|++|
T Consensus 142 ~-a~~-~g-~~~~------~~~~~~~~~~G~~tig~EI~eq~----~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~ 208 (420)
T PRK08639 142 Y-AEE-TG-ATFI------PPFDDPDVIAGQGTVAVEILEQL----EKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTK 208 (420)
T ss_pred H-HHh-cC-Cccc------CCCCChhHhcchhHHHHHHHHhc----cccCCCCEEEEecChhHHHHHHHHHHHHhCCCCE
Confidence 4 332 23 4543 56643 45689999999988776 333 8999999999999999999998 689999
Q ss_pred EEEEecCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHH
Q 013596 325 LIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDE 404 (439)
Q Consensus 325 vigVep~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~e 404 (439)
||||||+++ ..+..++..|++... ....|+++|+++..+|.....+.+..+|++++|+|+|
T Consensus 209 vigVep~~~----~~~~~s~~~g~~~~~---------------~~~~t~a~gi~v~~~g~~~~~~~~~~vd~~v~V~d~e 269 (420)
T PRK08639 209 IIGVEPAGA----ASMKAALEAGKPVTL---------------EKIDKFVDGAAVARVGDLTFEILKDVVDDVVLVPEGA 269 (420)
T ss_pred EEEEEECCC----CcHHHHHhCCCceeC---------------CCCCCeecccccCCccHHHHHHHHHhCCeEEEECHHH
Confidence 999999998 467888988887642 2357899999877777643323344679999999999
Q ss_pred HHHHHHHHHHcCCceEEchhHHHHHHHHHhh
Q 013596 405 ALEGMKLYLILPFKLLSRHGGLWLLVNCLHK 435 (439)
Q Consensus 405 a~~A~~~L~~~~~~l~~epagA~a~Aal~~~ 435 (439)
+.+|+++|+ ++.++++||++|+++|+++..
T Consensus 270 i~~a~~~l~-~~~gi~~e~sga~~lAal~~~ 299 (420)
T PRK08639 270 VCTTILELY-NKEGIVAEPAGALSIAALELY 299 (420)
T ss_pred HHHHHHHHH-HhcCceecchHHHHHHHHHhh
Confidence 999999885 455999999999999998763
No 17
>PLN02550 threonine dehydratase
Probab=100.00 E-value=5.9e-49 Score=416.88 Aligned_cols=279 Identities=24% Similarity=0.269 Sum_probs=234.9
Q ss_pred HHHHHHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHHH
Q 013596 111 ELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGV 190 (439)
Q Consensus 111 ~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~ 190 (439)
++...+.+.+ .+|||+++++|++.+ +.+||+|+|++|||||||+|++++.+..+.+....+.|+++|+||||+
T Consensus 98 il~~~v~~~i-~~TPL~~s~~LS~~~------g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~~~~GVV~aSaGNhAq 170 (591)
T PLN02550 98 ILSAKVYDVA-IESPLQLAKKLSERL------GVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQLDKGVICSSAGNHAQ 170 (591)
T ss_pred HHhhhhhccc-cCChhhhhHHhhHhh------CCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhcCCCCEEEECCCHHHH
Confidence 5666788888 489999999999987 789999999999999999999999998775545555688999999999
Q ss_pred HHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCc
Q 013596 191 ATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPY 270 (439)
Q Consensus 191 AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~ 270 (439)
++|++|+++|++|+||||+.. +..|+++++.|||+|+.++ ++++++.+.+.+. .++ .+..|+ |||
T Consensus 171 gvA~aA~~lGika~IvmP~~t---p~~Kv~~~r~~GAeVvl~g---~~~dea~~~A~~l-a~e-~g~~fi-------~pf 235 (591)
T PLN02550 171 GVALSAQRLGCDAVIAMPVTT---PEIKWQSVERLGATVVLVG---DSYDEAQAYAKQR-ALE-EGRTFI-------PPF 235 (591)
T ss_pred HHHHHHHHcCCCEEEEECCCC---CHHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHH-HHh-cCCEEE-------CCC
Confidence 999999999999999999987 4678999999999999996 3588888777653 322 333443 677
Q ss_pred ch-hhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEEEecCCCCCCchhhhhhhhcCC
Q 013596 271 PM-MVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGE 348 (439)
Q Consensus 271 ~~-~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVep~~s~~~~~~~~~sl~~G~ 348 (439)
++ .++.||+++|.|+.+|+ +..+|+||+|+||||+++|++.+++ .+|++|||||||+++ ..+..++..|+
T Consensus 236 ddp~viaGqgTig~EI~eQl----~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a----~~~~~s~~~G~ 307 (591)
T PLN02550 236 DHPDVIAGQGTVGMEIVRQH----QGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDA----NAMALSLHHGE 307 (591)
T ss_pred CChHHHHHHHHHHHHHHHHc----CCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCC----hHHHHHHhcCC
Confidence 43 56689999999987775 4358999999999999999999998 789999999999998 57888999998
Q ss_pred eeeeccchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHH
Q 013596 349 VGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWL 428 (439)
Q Consensus 349 ~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a 428 (439)
+..+ ....|+++|+.+..+|+....+.+.++|++++|+|+|+.+|+++|+ ++.++++||+||++
T Consensus 308 ~v~~---------------~~~~tiAdGiav~~~G~~t~~i~~~~vD~vV~Vsd~eI~~Ai~~l~-e~~givvEpAGA~a 371 (591)
T PLN02550 308 RVML---------------DQVGGFADGVAVKEVGEETFRLCRELVDGVVLVSRDAICASIKDMF-EEKRSILEPAGALA 371 (591)
T ss_pred cccc---------------CCCCCccceeecCCCCHHHHHHHHhhCCEEEEECHHHHHHHHHHHH-HHCCCEEeHHHHHH
Confidence 7542 2357999999988788764445556789999999999999999885 55599999999999
Q ss_pred HHHHHhh
Q 013596 429 LVNCLHK 435 (439)
Q Consensus 429 ~Aal~~~ 435 (439)
+||++..
T Consensus 372 lAall~~ 378 (591)
T PLN02550 372 LAGAEAY 378 (591)
T ss_pred HHHHHHH
Confidence 9999875
No 18
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=1e-48 Score=404.43 Aligned_cols=285 Identities=20% Similarity=0.221 Sum_probs=234.4
Q ss_pred ccHHHHHHHHHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHH
Q 013596 90 YALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQAL 169 (439)
Q Consensus 90 ~~l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~ 169 (439)
++++||.+|+. +|+++++ +|||+++++|++.+ |.+||+|+|++|||||||+|++++++.
T Consensus 7 ~~~~~i~~a~~--------------~~~~~i~-~TPl~~~~~ls~~~------g~~v~~K~E~~nptGSfK~Rga~~~i~ 65 (406)
T PRK06382 7 PSFDDILYAKS--------------YLEGYLN-RTPLIHSTTFGDEY------GGDIYFKLENFQKTGSFKSRGAVFKFS 65 (406)
T ss_pred CCHHHHHHHHH--------------HHhCcCC-CCCeeEhhhhHHHh------CCEEEEEecCCCCCCCCHHHHHHHHHH
Confidence 46889998887 4888995 79999999999887 789999999999999999999999998
Q ss_pred HHHHhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHH
Q 013596 170 LAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (439)
Q Consensus 170 ~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~ 249 (439)
.+.+.+..+.|+++|+||||+|+|++|+.+|++|+||||+.. +..|+++++.|||+|+.++. +++++.+.+.+.
T Consensus 66 ~~~~~~~~~gvv~aSsGN~g~a~A~aa~~~G~~~~ivmp~~~---~~~k~~~~~~~GA~Vv~~~~---~~~~a~~~a~~l 139 (406)
T PRK06382 66 KLSEDELRNGVITASAGNHAQGVAYAASINGIDAKIVMPEYT---IPQKVNAVEAYGAHVILTGR---DYDEAHRYADKI 139 (406)
T ss_pred hcchhccCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC---HHHHHHHHHHcCCEEEEECC---CHHHHHHHHHHH
Confidence 777655555688999999999999999999999999999976 56788999999999999864 577877666543
Q ss_pred HHHccCCceEEecccCCCCCcch-hhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEE
Q 013596 250 WVTNVETTHYILGSVAGPHPYPM-MVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIG 327 (439)
Q Consensus 250 ~~~~~~~~~y~~~s~~~~~p~~~-~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvig 327 (439)
.++ . ..|++ |||+. .+..+|.++|.|+.+|+ + .||+||+|+|+||+++|++.+++ .+|++||||
T Consensus 140 -a~~-~-~~~~v------~~~~~~~~i~g~~t~~~Ei~eq~----~-~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vig 205 (406)
T PRK06382 140 -AMD-E-NRTFI------EAFNDRWVISGQGTIGLEIMEDL----P-DLDQIIVPVGGGGLISGIALAAKHINPNVKIIG 205 (406)
T ss_pred -HHh-c-CCEec------CccCChHHHHHHHHHHHHHHHhc----C-CCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEE
Confidence 332 2 34554 45532 45578999999987664 4 69999999999999999999998 789999999
Q ss_pred EecCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHH
Q 013596 328 VEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALE 407 (439)
Q Consensus 328 Vep~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~ 407 (439)
|||+++ ..+..++..|++.. ....+|+++|++.+.++.....+.+.++|++++|+|+|+++
T Consensus 206 Ve~~~~----~~~~~~~~~~~~~~---------------~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~ei~~ 266 (406)
T PRK06382 206 IESELS----DSMKASLREGKIVA---------------HTSGVSICDGISVKYPGDLTFDIAKNYVDDIVTVTEESVSK 266 (406)
T ss_pred EEECCC----hHHHHHHHcCCcee---------------cCCCCCccccccCCCccHHHHHHHHHcCCEEEEECHHHHHH
Confidence 999998 56778888887653 12357999999876655432234445789999999999999
Q ss_pred HHHHHHHcCCceEEchhHHHHHHHHHhh
Q 013596 408 GMKLYLILPFKLLSRHGGLWLLVNCLHK 435 (439)
Q Consensus 408 A~~~L~~~~~~l~~epagA~a~Aal~~~ 435 (439)
|+++|+ ++.|+++||++|+++|++...
T Consensus 267 a~~~l~-~~~gi~~epsga~~laal~~~ 293 (406)
T PRK06382 267 AIYKLF-EREKIVAEPSGAVGLAAIMEG 293 (406)
T ss_pred HHHHHH-HHcCceechHHHHHHHHHHhc
Confidence 999885 555999999999999988653
No 19
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-49 Score=390.58 Aligned_cols=275 Identities=25% Similarity=0.278 Sum_probs=240.9
Q ss_pred HHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHHHHHHH
Q 013596 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATAT 194 (439)
Q Consensus 115 ~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~ 194 (439)
.+.+.+ .+|||.+.-.|++.+ +.++|||+|++||+||||.||+.+++....+++++..|+++|+||||+|+||
T Consensus 59 ~i~~~~-~~TPl~~s~~lS~~~------g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~~~gViasSaGNha~a~Ay 131 (457)
T KOG1250|consen 59 KIYPVI-VETPLLKSVALSKKA------GMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQKKAGVIASSAGNHAQAAAY 131 (457)
T ss_pred ccccce-ecccchhhhhhhhhc------CCceEEEehhcccccceehhhHHHHHHHHHHhhhcCceEEecCccHHHHHHH
Confidence 366777 579999999999987 9999999999999999999999999987766666667889999999999999
Q ss_pred HHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcch-h
Q 013596 195 VCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPM-M 273 (439)
Q Consensus 195 aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~-~ 273 (439)
+|+++|++++||||..+ +..|+++++.+||+|+..+ .++++|...+.+.. +.++..| +|||+. .
T Consensus 132 aa~~LgipaTIVmP~~t---p~~kiq~~~nlGA~Vil~G---~~~deAk~~a~~lA--ke~gl~y-------I~pfDhP~ 196 (457)
T KOG1250|consen 132 AARKLGIPATIVMPVAT---PLMKIQRCRNLGATVILSG---EDWDEAKAFAKRLA--KENGLTY-------IPPFDHPD 196 (457)
T ss_pred HHHhcCCceEEEecCCC---hHHHHHHHhccCCEEEEec---ccHHHHHHHHHHHH--HhcCcee-------cCCCCCch
Confidence 99999999999999987 5679999999999999975 46899988887743 2345556 489986 7
Q ss_pred hhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEEEecCCCCCCchhhhhhhhcCCeeee
Q 013596 274 VRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVL 352 (439)
Q Consensus 274 v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVep~~s~~~~~~~~~sl~~G~~~~~ 352 (439)
|++||+++|.||.+|++ ..+++|++||||||+++||+.+++ -.|.++|||||++++ ..+..+++.|++..+
T Consensus 197 I~aGqgTig~EIl~ql~----~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a----~~f~~sl~~g~~V~l 268 (457)
T KOG1250|consen 197 IWAGQGTIGLEILEQLK----EPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGA----HSFNASLKAGKPVTL 268 (457)
T ss_pred hhcCcchHHHHHHHhhc----CCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCc----HHHHHHHhcCCeeec
Confidence 88999999999988873 235699999999999999999998 689999999999998 789999999999875
Q ss_pred ccchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHHHHH
Q 013596 353 HGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVNC 432 (439)
Q Consensus 353 ~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~Aal 432 (439)
+ ...|+||||+++.+|.+...+.+..+|+++.|+|+|+..|+.+|. +.++.++||++|+++|+.
T Consensus 269 p---------------~i~s~AdglaV~~Vg~~tf~~a~~~~d~vvvV~~~ei~aaI~~l~-edek~vvEpAgaaaLaai 332 (457)
T KOG1250|consen 269 P---------------KITSLADGLAVKTVGENTFELAQKLVDRVVVVEDDEIAAAILRLF-EDEKMVVEPAGAAALAAI 332 (457)
T ss_pred c---------------cccchhcccccchhhHHHHHHHHhcCceEEEeccHHHHHHHHHHH-HhhhheeccchHHHHHHH
Confidence 3 378999999999999986556666789999999999999999995 455999999999999998
Q ss_pred Hhh
Q 013596 433 LHK 435 (439)
Q Consensus 433 ~~~ 435 (439)
+..
T Consensus 333 ~~~ 335 (457)
T KOG1250|consen 333 YSG 335 (457)
T ss_pred Hhc
Confidence 876
No 20
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=7.6e-49 Score=405.41 Aligned_cols=277 Identities=24% Similarity=0.311 Sum_probs=225.0
Q ss_pred HHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHHHHHHH
Q 013596 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATAT 194 (439)
Q Consensus 115 ~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~ 194 (439)
++.+.++ +|||+++++|++.+ +.+||+|+|++|||||||+|++++.+..+.+....+.|+++|+||||+++|+
T Consensus 9 ~i~~~i~-~TPl~~~~~ls~~~------g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~~~~gvv~aSsGN~g~a~A~ 81 (409)
T TIGR02079 9 RLKEVVP-HTPLQLNERLSEKY------GANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQLAKGVVCASAGNHAQGFAY 81 (409)
T ss_pred HHhCcCC-CCCccccHHHHHHh------CCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhhCCEEEEECccHHHHHHHH
Confidence 5788885 79999999999887 7899999999999999999999999976544343456889999999999999
Q ss_pred HHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcch-h
Q 013596 195 VCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPM-M 273 (439)
Q Consensus 195 aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~-~ 273 (439)
+|+++|++|+||||+.. ++.|+++|+.|||+|+.+....++++++.+.+.+. .++ . ..|++ |||++ .
T Consensus 82 ~a~~~G~~~~iv~p~~~---~~~k~~~~~~~GA~vv~v~~~g~~~~~a~~~a~~~-~~~-~-g~~~~------~~~~~~~ 149 (409)
T TIGR02079 82 ACRHLGVHGTVFMPATT---PKQKIDRVKIFGGEFIEIILVGDTFDQCAAAAREH-VED-H-GGTFI------PPFDDPR 149 (409)
T ss_pred HHHHcCCCEEEEECCCC---CHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHH-HHh-c-CCEEe------CCCCCHh
Confidence 99999999999999976 56789999999998543321124688888877664 332 2 34454 45532 3
Q ss_pred hhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEEEecCCCCCCchhhhhhhhcCCeeee
Q 013596 274 VRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVL 352 (439)
Q Consensus 274 v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVep~~s~~~~~~~~~sl~~G~~~~~ 352 (439)
+..+|.++|+|+.+|+ +..||+||+|+|+||+++|++.+++ .+|++|||||||+++ ..+..++..|++...
T Consensus 150 ~~~g~~ti~~Ei~~q~----~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~----~~~~~s~~~g~~~~~ 221 (409)
T TIGR02079 150 IIEGQGTVAAEILDQL----PEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGA----PSMKASLEAGEVVTL 221 (409)
T ss_pred HhhhhHHHHHHHHHhc----CCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCC----CcHHHHHHCCCceec
Confidence 5579999999987775 4359999999999999999999998 689999999999998 467888888886532
Q ss_pred ccchhhhccccCCCccCCcccccccCCCCCCCc-hhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHHHH
Q 013596 353 HGALSYLLQNEDGQIIEPHSISAGLDYPGVGPE-HSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVN 431 (439)
Q Consensus 353 ~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~-~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~Aa 431 (439)
...+|+++|+.+..+|.. +..+ ...+|++++|+|+|+.+|+++|+ ++.|+++||++|+++|+
T Consensus 222 ---------------~~~~t~a~g~~v~~~g~~~~~~~-~~~vd~vv~V~d~e~~~a~~~l~-~~~gi~ve~agaa~lAa 284 (409)
T TIGR02079 222 ---------------DKIDNFVDGAAVKRVGDLNFKAL-KDVPDEVTLVPEGAVCTTILDLY-NLEGIVAEPAGALSIAA 284 (409)
T ss_pred ---------------CCCCCeeccccCCCCcHHHHHHH-HHhCCcEEEECHHHHHHHHHHHH-HhcCceecchHHHHHHH
Confidence 235799999998777763 3334 44679999999999999999885 55599999999999999
Q ss_pred HHhh
Q 013596 432 CLHK 435 (439)
Q Consensus 432 l~~~ 435 (439)
++..
T Consensus 285 ~~~~ 288 (409)
T TIGR02079 285 LERL 288 (409)
T ss_pred HHhh
Confidence 8864
No 21
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=2.5e-48 Score=390.29 Aligned_cols=284 Identities=23% Similarity=0.260 Sum_probs=232.9
Q ss_pred cHHHHHHHHHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHH
Q 013596 91 ALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALL 170 (439)
Q Consensus 91 ~l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~ 170 (439)
++++|..|+++ |.++++ +|||+++++|++.+ +.+||+|+|++|||||||+|++.+++..
T Consensus 2 ~~~~i~~a~~~--------------i~~~i~-~TPl~~~~~l~~~~------g~~l~~K~E~~nptGS~K~R~a~~~i~~ 60 (322)
T PRK07476 2 SLADIYRARRR--------------IAGRVR-RTPLVASASLSARA------GVPVWLKLETLQPTGSFKLRGATNALLS 60 (322)
T ss_pred CHHHHHHHHHH--------------HhCCCC-CCCceechhhHHhh------CCeEEEEEccCCCCCCchHHHHHHHHHh
Confidence 47888888884 888896 79999999999887 7899999999999999999999999999
Q ss_pred HHHhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 013596 171 AKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (439)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (439)
+.+.+.++.|+++|+||||+|+|++|+.+|++|+||||+.. ++.|+++|+.|||+|+.++. +++++.+.+.+.
T Consensus 61 a~~~~~~~gvv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~---~~~k~~~~~~~GA~V~~~~~---~~~~~~~~a~~~- 133 (322)
T PRK07476 61 LSAQERARGVVTASTGNHGRALAYAARALGIRATICMSRLV---PANKVDAIRALGAEVRIVGR---SQDDAQAEVERL- 133 (322)
T ss_pred hhhhhhCCeEEEECCChHHHHHHHHHHHhCCCEEEEeCCCC---CHHHHHHHHHcCCEEEEECC---CHHHHHHHHHHH-
Confidence 98888776688999999999999999999999999999976 46689999999999999974 467777666543
Q ss_pred HHccCCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEEEe
Q 013596 251 VTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVE 329 (439)
Q Consensus 251 ~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVe 329 (439)
.++ +..|+++++.|+++ ..+|.++|.|+.+|+ + .+|+||+|+|+||+++|++.+|+ .+|++||||||
T Consensus 134 ~~~--~g~~~~~~~~n~~~-----~~g~~t~~~Ei~~Q~----~-~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe 201 (322)
T PRK07476 134 VRE--EGLTMVPPFDDPRI-----IAGQGTIGLEILEAL----P-DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVS 201 (322)
T ss_pred HHh--cCCEEeCCCCCcce-----eechhHHHHHHHHhC----c-CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 332 23456666655443 378889999987765 4 58999999999999999999998 78999999999
Q ss_pred cCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCcccccccCCCCCCC--ch-hhhhhcCCcEEEEeCHHHHH
Q 013596 330 AAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGP--EH-SFLKDEGRAEYYNVTDDEAL 406 (439)
Q Consensus 330 p~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~--~~-~~l~~~~~~~~v~VsD~ea~ 406 (439)
|+++ ..+..++..|++.. ...+.|+++||. ++++. .. ..+.+...|+++.|+|+|++
T Consensus 202 ~~~~----~~~~~s~~~g~~~~---------------~~~~~t~a~~l~-~~~~~~~~~~~~~~~~~~d~~~~V~d~e~~ 261 (322)
T PRK07476 202 MERG----AAMHASLAAGRPVQ---------------VEEVPTLADSLG-GGIGLDNRYTFAMCRALLDDVVLLDEAEIA 261 (322)
T ss_pred ECCc----hHHHHHHHcCCcee---------------CCCCCCcccccc-ccccCCcHHHHHHHHhcCCeEEEECHHHHH
Confidence 9987 56788888887653 224678999886 23332 22 22333467999999999999
Q ss_pred HHHHHHHHcCCceEEchhHHHHHHHHHhh
Q 013596 407 EGMKLYLILPFKLLSRHGGLWLLVNCLHK 435 (439)
Q Consensus 407 ~A~~~L~~~~~~l~~epagA~a~Aal~~~ 435 (439)
+++++|+. +.++++||++|+++|+++..
T Consensus 262 ~a~~~l~~-~~gi~ve~a~a~~laal~~~ 289 (322)
T PRK07476 262 AGIRHAYR-EERLVVEGAGAVGIAALLAG 289 (322)
T ss_pred HHHHHHHH-hcCceEeChhHHHHHHHHhC
Confidence 99998864 44999999999999999853
No 22
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=1.8e-48 Score=410.41 Aligned_cols=280 Identities=25% Similarity=0.288 Sum_probs=234.9
Q ss_pred HHHHHHHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHH
Q 013596 110 EELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHG 189 (439)
Q Consensus 110 ~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG 189 (439)
.++...+.+.+ .+|||+++++|++.+ +.+||+|+|++|||||||+|+|++.+..+.+..+.+.|+++|+||||
T Consensus 5 ~~~~~~v~~~i-~~TPL~~~~~Ls~~~------g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~~~gVV~aSaGNha 77 (499)
T TIGR01124 5 AILTARVYEAA-QETPLQKAAKLSERL------GNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQKARGVIAASAGNHA 77 (499)
T ss_pred HHHHhHhhCcc-CCCCeeehHHHHHHh------CCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhcCCEEEEECCCHHH
Confidence 46667888889 489999999999987 78999999999999999999999999876544444568899999999
Q ss_pred HHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCC
Q 013596 190 VATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHP 269 (439)
Q Consensus 190 ~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p 269 (439)
+++|++|+++|++|+||||+.. +..|++.++.|||+|+.++ ++++++.+.+.+. .++ .+. +++ ||
T Consensus 78 ~~vA~aa~~~Gi~~~IvmP~~t---p~~Kv~~~r~~GA~Vvl~g---~~~d~a~~~a~~l-a~~-~g~-~~i------~p 142 (499)
T TIGR01124 78 QGVAFSAARLGLKALIVMPETT---PDIKVDAVRGFGGEVVLHG---ANFDDAKAKAIEL-SQE-KGL-TFI------HP 142 (499)
T ss_pred HHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHhCCCEEEEeC---cCHHHHHHHHHHH-HHh-cCC-Eee------CC
Confidence 9999999999999999999986 5679999999999999985 3688888777553 332 333 443 66
Q ss_pred cch-hhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEEEecCCCCCCchhhhhhhhcC
Q 013596 270 YPM-MVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKG 347 (439)
Q Consensus 270 ~~~-~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVep~~s~~~~~~~~~sl~~G 347 (439)
|++ .++.+|+++|.|+.+|+ +..+|+||+|+||||+++|++.+++ ..|++|||||||+++ ..+..++..|
T Consensus 143 ~~~~~~i~G~gtig~EI~~q~----~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~----~~~~~s~~~g 214 (499)
T TIGR01124 143 FDDPLVIAGQGTLALEILRQV----ANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDS----DCMKQALDAG 214 (499)
T ss_pred CCChHHHHhhHHHHHHHHHhC----CCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCC----hHHHHHHhcC
Confidence 643 56689999999987765 4469999999999999999999998 689999999999998 5788899999
Q ss_pred CeeeeccchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHH
Q 013596 348 EVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLW 427 (439)
Q Consensus 348 ~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~ 427 (439)
++..+ ....|+++|++++.+|+....+.+.++|++++|+|+|+.+|+++|+ ++.++++||++|+
T Consensus 215 ~~~~~---------------~~~~t~adgiav~~~g~~~~~~~~~~vd~vv~V~d~ei~~ai~~l~-~~~gii~EpagA~ 278 (499)
T TIGR01124 215 EPVDL---------------DQVGLFADGVAVKRVGDETFRLCQQYLDDIVTVDTDEVCAAIKDLF-EDTRAVAEPAGAL 278 (499)
T ss_pred CceeC---------------CCCCCccCcccCCCccHHHHHHHHHhCCEEEEECHHHHHHHHHHHH-HhcCcEEechHHH
Confidence 87653 2367899999988887764445556789999999999999999885 5559999999999
Q ss_pred HHHHHHhh
Q 013596 428 LLVNCLHK 435 (439)
Q Consensus 428 a~Aal~~~ 435 (439)
++|+++..
T Consensus 279 ~lAal~~~ 286 (499)
T TIGR01124 279 ALAGLKKY 286 (499)
T ss_pred HHHHHHHh
Confidence 99999875
No 23
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=6e-48 Score=387.57 Aligned_cols=286 Identities=25% Similarity=0.282 Sum_probs=231.9
Q ss_pred cccHHHHHHHHHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHH
Q 013596 89 MYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 168 (439)
Q Consensus 89 ~~~l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~ 168 (439)
|.++++|.+|+. ++.++++ +|||+++++|++.+ |.+||+|+|++|||||||+|++.+.+
T Consensus 2 ~~~~~~i~~a~~--------------~i~~~~~-~TPl~~~~~l~~~~------g~~i~~K~E~~nptGS~K~Rga~~~l 60 (322)
T PRK06110 2 MFTLAELEAAAA--------------VVYAAMP-PTPQYRWPLLAERL------GCEVWVKHENHTPTGAFKVRGGLVYF 60 (322)
T ss_pred CCCHHHHHHHHH--------------HHhCcCc-CCCcccchhHHHHh------CCeEEEEeccCCCcCCcHHHHHHHHH
Confidence 456888888877 4788885 79999999999887 78999999999999999999999999
Q ss_pred HHHHHhCC-CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHH
Q 013596 169 LLAKRLGK-TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAI 247 (439)
Q Consensus 169 ~~a~~~g~-~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~ 247 (439)
..+.+.+. ...|+++|+||||+|+|++|+++|++|+||||+.. ++.|+++|+.|||+|+.++ ++++++.+.+.
T Consensus 61 ~~a~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~---~~~k~~~i~~~GA~V~~~~---~~~~~~~~~a~ 134 (322)
T PRK06110 61 DRLARRGPRVRGVISATRGNHGQSVAFAARRHGLAATIVVPHGN---SVEKNAAMRALGAELIEHG---EDFQAAREEAA 134 (322)
T ss_pred HHhhhhcCCCceEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC---CHHHHHHHHHcCCEEEEEC---CCHHHHHHHHH
Confidence 88876542 34588999999999999999999999999999976 4568899999999999985 35788877765
Q ss_pred HHHHHccCCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEE
Q 013596 248 RDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLI 326 (439)
Q Consensus 248 ~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvi 326 (439)
+. .++ . ..|+++++ || .+..+|.++|.|+.+|+ + .+|+||+|+|+||+++|++.+++ .+|++|||
T Consensus 135 ~~-~~~-~-~~~~~~~~---~~---~~~~G~~t~~~Ei~~q~----~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi 200 (322)
T PRK06110 135 RL-AAE-R-GLHMVPSF---HP---DLVRGVATYALELFRAV----P-DLDVVYVPIGMGSGICGAIAARDALGLKTRIV 200 (322)
T ss_pred HH-HHh-c-CCEEcCCC---CC---hHHhccchHHHHHHhhC----C-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEE
Confidence 53 333 2 35665443 22 23468999999987664 4 58999999999999999999997 68899999
Q ss_pred EEecCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHH
Q 013596 327 GVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEAL 406 (439)
Q Consensus 327 gVep~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~ 406 (439)
+|||+++ ..+..++..|+.... ....|+++|++++.+++....+.+..++++++|+|+|++
T Consensus 201 ~Vep~~~----~~~~~~~~~g~~~~~---------------~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~~~Vsd~e~~ 261 (322)
T PRK06110 201 GVVSAHA----PAYALSFEAGRVVTT---------------PVATTLADGMACRTPDPEALEVIRAGADRIVRVTDDEVA 261 (322)
T ss_pred EEeeCCC----hHHHHHHHcCCcccC---------------CCCCCcccccCCCCccHHHHHHHHHhCCeEEEECHHHHH
Confidence 9999998 567777888876531 125799999986544443222334567999999999999
Q ss_pred HHHHHHHHcCCceEEchhHHHHHHHHHhh
Q 013596 407 EGMKLYLILPFKLLSRHGGLWLLVNCLHK 435 (439)
Q Consensus 407 ~A~~~L~~~~~~l~~epagA~a~Aal~~~ 435 (439)
+++++|+ +++++++||++++++|+++..
T Consensus 262 ~a~~~l~-~~~gi~~e~ssaa~laa~~~~ 289 (322)
T PRK06110 262 AAMRAYF-TDTHNVAEGAGAAALAAALQE 289 (322)
T ss_pred HHHHHHH-HHcCcEEehHHHHHHHHHHhC
Confidence 9999885 445999999999999998763
No 24
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=1.3e-47 Score=393.20 Aligned_cols=332 Identities=16% Similarity=0.139 Sum_probs=242.3
Q ss_pred CCCccCCCCccccccccccHHHHHHHHHHhhCCchhHHHHHHHHhhh--cCCCCcccchhhhhhHhcC-CC-CCCCeEEE
Q 013596 73 FGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDY--VGRETPLYFAERLTEHYRR-PN-GGGPHIYL 148 (439)
Q Consensus 73 ~~~~g~~GG~~vPe~l~~~l~~l~~a~~~~~~~~~f~~~~~~~i~~~--ig~~TPL~~~~~l~~~l~~-~~-~~g~~Iyl 148 (439)
|-+||+---...| .+++||.+|+.++...+.|....-.-+... ++ +|||+++++|++.+|. ++ +.+.+||+
T Consensus 5 ~~~~~~~~~~~~~----~~~~~i~~a~~~i~~~~~~~~~~~~~~~~~~~~~-~TPLv~~~~ls~~~g~~~~~~~~~~v~~ 79 (404)
T cd06447 5 NPNYGKPAEALAP----LSREDIFDAEARLKRFAPYIAKVFPETAASHGII-ESPLLPIPRMKQALEKLYHQPIKGRLLL 79 (404)
T ss_pred CCCCCchhhccCC----CCHHHHHHHHHHHhhcchhhhhhCccccccCCcc-CCCceehHHHHHHhccccccCcCceEEE
Confidence 4456664444444 458999999886444333322111112222 64 7999999999987610 00 01379999
Q ss_pred EeCCCCC-CCchhhhHHHHHHHH-----HHHhCC--------------------CeeEEecCcchHHHHHHHHHHHcCCe
Q 013596 149 KREDLNH-TGAHKINNAVGQALL-----AKRLGK--------------------TRIIAETGAGQHGVATATVCARFGLQ 202 (439)
Q Consensus 149 K~E~~np-TGSfK~Rga~~~~~~-----a~~~g~--------------------~~~Vv~aSsGNhG~AlA~aa~~~Gi~ 202 (439)
|+|++|| |||||||++++++.. +.+.|. .++|+++||||||+++|++|+.+|++
T Consensus 80 K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~~~~~~~~VV~aSsGN~G~alA~~a~~~G~~ 159 (404)
T cd06447 80 KADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFRKLFSQYSIAVGSTGNLGLSIGIMAAALGFK 159 (404)
T ss_pred EecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhhhcccCCEEEEECccHHHHHHHHHHHHcCCC
Confidence 9999999 999999999998864 444343 24789999999999999999999999
Q ss_pred EEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhhhHHhH
Q 013596 203 CIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIG 282 (439)
Q Consensus 203 ~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig 282 (439)
|+||||++. ++.|+++|+.|||+|+.++. +++++.+.+.+. .++ ....|++++++. | .++++|.++|
T Consensus 160 ~~IvvP~~~---~~~K~~~ira~GAeVv~v~~---~~~~a~~~a~~l-a~~-~~~~~~v~~~n~--~---~~iaG~~T~g 226 (404)
T cd06447 160 VTVHMSADA---KQWKKDKLRSKGVTVVEYET---DYSKAVEEGRKQ-AAA-DPMCYFVDDENS--R---DLFLGYAVAA 226 (404)
T ss_pred EEEEECCCC---cHHHHHHHHHCCCEEEEECC---CHHHHHHHHHHH-HHH-CCCeEeCCCCCc--h---hHHhhHHHHH
Confidence 999999976 57899999999999999974 577877666553 332 223466555321 1 3458999999
Q ss_pred HHHHHHHHH---HhC-CCCCEEEEcCCchHHHHHHHHHHh-c-CCCcEEEEEecCCCCCCchhhhhhhhcCCeeeeccch
Q 013596 283 KETRRQALE---KWG-GKPDVLIACVGGGSNAMGLFHEFV-N-DKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGAL 356 (439)
Q Consensus 283 ~E~~~Qi~e---~~g-~~~d~vvvpvG~GG~~aGi~~~~~-~-~p~vrvigVep~~s~~~~~~~~~sl~~G~~~~~~g~~ 356 (439)
.|+.+|+.+ ..+ ..||+||+|+|+||+++|++.+|+ . .|+++||+|||+++ ..+..+++.|......
T Consensus 227 ~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~a----p~~~~s~~ag~~~~~~--- 299 (404)
T cd06447 227 SRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHS----PCMLLGMATGLHDKIS--- 299 (404)
T ss_pred HHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCC----hHHHHHHHcCCCcccc---
Confidence 999988732 111 136689999999999999999998 3 78999999999997 4566778887664321
Q ss_pred hhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHHHHHHhhh
Q 013596 357 SYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVNCLHKL 436 (439)
Q Consensus 357 ~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~Aal~~~~ 436 (439)
.+ ..| ...+|+++||+++.++.....+.+..+|++++|+|+|+++++++|+. +.++++||++|+++|+++...
T Consensus 300 ---~~-~~g--~~~~TiadGl~~~~p~~~~~~~~~~~vd~~v~Vsd~ei~~a~r~La~-~~gi~vepSgAa~lAAl~~~~ 372 (404)
T cd06447 300 ---VQ-DIG--IDNRTAADGLAVGRPSGLVGKLMEPLLSGIYTVEDDELYRLLAMLKD-SENIEVEPSAAAGFTGPAQVL 372 (404)
T ss_pred ---cc-ccC--CCccchhhhhcCCCcchhHHHHHHHhCCcEEEECHHHHHHHHHHHHH-HcCcEEeHHHHHHHHHHHHHH
Confidence 00 000 13679999999766665433333456799999999999999998864 449999999999999998764
No 25
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=7.5e-48 Score=407.03 Aligned_cols=281 Identities=24% Similarity=0.274 Sum_probs=234.4
Q ss_pred HHHHHHHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHH
Q 013596 110 EELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHG 189 (439)
Q Consensus 110 ~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG 189 (439)
.++..++.+.+ .+|||+++++|++.+ +.+||+|+|++|||||||+|+|.+.+..+.+....+.|+++|+||||
T Consensus 8 ~~~~~~v~~~~-~~TPL~~~~~Ls~~~------g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~~~gvV~aSaGNha 80 (504)
T PRK09224 8 KILTARVYDVA-QETPLEKAPKLSARL------GNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQLARGVITASAGNHA 80 (504)
T ss_pred HHHHHHhcCcC-CCCCceehhHhHHHh------CCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhcCCEEEEECcCHHH
Confidence 46777888999 489999999999987 78999999999999999999999999876644344568899999999
Q ss_pred HHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCC
Q 013596 190 VATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHP 269 (439)
Q Consensus 190 ~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p 269 (439)
+++|++|+++|++|+||||+.+ +..|++.++.|||+|+.++. +++++.+.+.+. .++ .+. +++ ||
T Consensus 81 ~avA~aa~~lGi~~~IvmP~~t---p~~K~~~~r~~GA~Vi~~g~---~~~~a~~~a~~l-~~~-~g~-~~v------~~ 145 (504)
T PRK09224 81 QGVALSAARLGIKAVIVMPVTT---PDIKVDAVRAFGGEVVLHGD---SFDEAYAHAIEL-AEE-EGL-TFI------HP 145 (504)
T ss_pred HHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHhCCCEEEEECC---CHHHHHHHHHHH-HHh-cCC-EEe------CC
Confidence 9999999999999999999976 56799999999999999963 688998877553 332 334 443 56
Q ss_pred cch-hhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEEEecCCCCCCchhhhhhhhcC
Q 013596 270 YPM-MVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKG 347 (439)
Q Consensus 270 ~~~-~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVep~~s~~~~~~~~~sl~~G 347 (439)
|++ .++.+|+++|.|+.+|+ +..+|+||+|+||||+++|++.+++ ..|++|||||||+++ ..+..++..|
T Consensus 146 f~~~~~i~G~gTi~~EI~~q~----~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~----~~~~~s~~~g 217 (504)
T PRK09224 146 FDDPDVIAGQGTIAMEILQQH----PHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDS----ACLKAALEAG 217 (504)
T ss_pred CCCcHHHHhHHHHHHHHHHhc----cCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCC----hHHHHHHhcC
Confidence 643 56689999999987765 4359999999999999999999998 689999999999998 5688889988
Q ss_pred CeeeeccchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHH
Q 013596 348 EVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLW 427 (439)
Q Consensus 348 ~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~ 427 (439)
++..+ ....++++|++++.+|+....+.+.++|++++|+|+|+.+|+++|+ ++.++++||++|+
T Consensus 218 ~~~~~---------------~~~~~~adg~av~~~g~~~~~~~~~~vd~~v~Vsd~ei~~a~~~l~-~~~~~~~epagA~ 281 (504)
T PRK09224 218 ERVDL---------------PQVGLFADGVAVKRIGEETFRLCQEYVDDVITVDTDEICAAIKDVF-EDTRSIAEPAGAL 281 (504)
T ss_pred CCccC---------------CCCCcccCcccCCCccHHHHHHHHhcCCeEEEECHHHHHHHHHHHH-HhcCeEEcHHHHH
Confidence 87542 2367899999887777654444455789999999999999999885 5559999999999
Q ss_pred HHHHHHhhh
Q 013596 428 LLVNCLHKL 436 (439)
Q Consensus 428 a~Aal~~~~ 436 (439)
++|+++...
T Consensus 282 ~lAal~~~~ 290 (504)
T PRK09224 282 ALAGLKKYV 290 (504)
T ss_pred HHHHHHHhh
Confidence 999998753
No 26
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=8.9e-48 Score=387.53 Aligned_cols=287 Identities=23% Similarity=0.262 Sum_probs=231.8
Q ss_pred cccHHHHHHHHHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHH
Q 013596 89 MYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 168 (439)
Q Consensus 89 ~~~l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~ 168 (439)
+.++++|.+++++ |.++++ +|||+++++|++.+ +.+||+|+|++|||||||||++.+++
T Consensus 8 ~~~~~~i~~a~~~--------------i~~~i~-~TPlv~~~~l~~~~------g~~i~~K~E~~nptGS~KdR~a~~~i 66 (333)
T PRK08638 8 PVAIDDIIEAKQR--------------LAGRIR-KTPLPRSNYLSERC------KGEIFLKLENMQRTGSFKIRGAFNKL 66 (333)
T ss_pred CCCHHHHHHHHHH--------------hhCcCc-CCCceechhhHHhh------CCeEEEEeccCCccCCcHHHHHHHHH
Confidence 3457889888874 788885 79999999999876 78999999999999999999999999
Q ss_pred HHHHHhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHH
Q 013596 169 LLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIR 248 (439)
Q Consensus 169 ~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~ 248 (439)
..+.+..+.+.|+++|+||||+|+|++|+.+|++|+||||+.. ++.|+++|+.|||+|+.++. +++++.+.+.+
T Consensus 67 ~~~~~~~~~~~vv~~SsGN~g~alA~~aa~~G~~~~iv~p~~~---~~~k~~~~~~~GA~V~~~~~---~~~~~~~~a~~ 140 (333)
T PRK08638 67 SSLTDAEKRKGVVACSAGNHAQGVALSCALLGIDGKVVMPKGA---PKSKVAATCGYGAEVVLHGD---NFNDTIAKVEE 140 (333)
T ss_pred HhccHHhcCCeEEEeCCcHHHHHHHHHHHHcCCCEEEEeCCCC---cHHHHHHHHHcCCEEEEECc---CHHHHHHHHHH
Confidence 8776533345788999999999999999999999999999976 46789999999999999863 57777766554
Q ss_pred HHHHccCCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEE
Q 013596 249 DWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIG 327 (439)
Q Consensus 249 ~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvig 327 (439)
. +++ . ..|++++++|+. ...+|.++|.|+.+|+ + .+|+||+|+|+||+++|++.+++ .+|++||||
T Consensus 141 ~-a~~-~-g~~~~~~~~~~~-----~~~g~~t~a~Ei~~q~----~-~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vig 207 (333)
T PRK08638 141 I-VEE-E-GRTFIPPYDDPK-----VIAGQGTIGLEILEDL----W-DVDTVIVPIGGGGLIAGIAVALKSINPTIHIIG 207 (333)
T ss_pred H-HHh-c-CCEEcCcCCCcc-----hhccccHHHHHHHhhc----C-CCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEE
Confidence 3 333 2 346666665433 2378889999987775 3 48999999999999999999998 689999999
Q ss_pred EecCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHH
Q 013596 328 VEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALE 407 (439)
Q Consensus 328 Vep~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~ 407 (439)
|||+++ +.+..++..|++.. .....|+++||+.+.++.....+.+...|++++|+|+|+++
T Consensus 208 Vep~g~----~~~~~s~~~g~~~~---------------~~~~~ti~~gl~~~~p~~~~~~~~~~~~d~~v~Vsd~ea~~ 268 (333)
T PRK08638 208 VQSENV----HGMAASFYAGEITT---------------HRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRN 268 (333)
T ss_pred EEECCC----chHHHHHHCCCccc---------------CCCCCCeeccccCCCccHHHHHHHHHhCCeEEEECHHHHHH
Confidence 999998 57888898887763 12356899998754444321112234679999999999999
Q ss_pred HHHHHHHcCCceEEchhHHHHHHHHHhh
Q 013596 408 GMKLYLILPFKLLSRHGGLWLLVNCLHK 435 (439)
Q Consensus 408 A~~~L~~~~~~l~~epagA~a~Aal~~~ 435 (439)
++++|+.++ ++++||++|+++|++...
T Consensus 269 a~~~l~~~~-gi~~e~sgA~~~Aa~~~~ 295 (333)
T PRK08638 269 AMKDLIQRN-KVVTEGAGALATAALLSG 295 (333)
T ss_pred HHHHHHHHc-CCeechhHHHHHHHHHhC
Confidence 999986544 999999999999998753
No 27
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=9.8e-48 Score=387.58 Aligned_cols=275 Identities=24% Similarity=0.290 Sum_probs=224.2
Q ss_pred ccHHHHHHHHHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHH
Q 013596 90 YALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQAL 169 (439)
Q Consensus 90 ~~l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~ 169 (439)
++++||.+|+. +|++++ ++|||++++. -+||+|+|++|||||||+|++++.+.
T Consensus 21 ~~~~~i~~A~~--------------~i~~~i-~~TPL~~~~~------------l~v~lK~E~~nptGSfK~RgA~~~l~ 73 (349)
T PRK08813 21 VSVADVLAAQA--------------RLRRYL-SPTPLHYAER------------FGVWLKLENLQRTGSYKVRGALNALL 73 (349)
T ss_pred CCHHHHHHHHH--------------HHhCcC-CCCCeEECCC------------CcEEEEecCCCCcCCCHHHHHHHHHH
Confidence 45889999887 489999 5899998753 24999999999999999999999999
Q ss_pred HHHHhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHH
Q 013596 170 LAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (439)
Q Consensus 170 ~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~ 249 (439)
.+.+.+..+.|+++|+||||+|+|++|+.+|++|+||||+.. ++.|+++|+.|||+|+.++. +++++.+.+.+.
T Consensus 74 ~a~~~~~~~~VV~aSsGN~G~alA~aa~~~Gi~~~IvvP~~~---~~~K~~~i~~~GAeVv~~g~---~~~~a~~~a~~l 147 (349)
T PRK08813 74 AGLERGDERPVICASAGNHAQGVAWSAYRLGVQAITVMPHGA---PQTKIAGVAHWGATVRQHGN---SYDEAYAFAREL 147 (349)
T ss_pred HHHHcCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC---CHHHHHHHHHcCCEEEEECC---CHHHHHHHHHHH
Confidence 999888776789999999999999999999999999999976 56899999999999999953 688887766553
Q ss_pred HHHccCCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHhcCCCcEEEEEe
Q 013596 250 WVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVE 329 (439)
Q Consensus 250 ~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~~~p~vrvigVe 329 (439)
.++ +..|+++++++ ..+++||.++|+|+.+| .||+||+|+|+||+++|++.+++. +.+||||||
T Consensus 148 -a~~--~g~~~v~~~~n-----p~~i~G~~Tig~EI~e~-------~pD~VvvpvGgGGliaGia~~lk~-~~~rVigVq 211 (349)
T PRK08813 148 -ADQ--NGYRFLSAFDD-----PDVIAGQGTVGIELAAH-------APDVVIVPIGGGGLASGVALALKS-QGVRVVGAQ 211 (349)
T ss_pred -HHh--cCCEEcCccCC-----hHHHHHHHHHHHHHHcC-------CCCEEEEEeCccHHHHHHHHHHhc-CCCEEEEEE
Confidence 332 34555443322 24558999999998643 489999999999999999999984 679999999
Q ss_pred cCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHHHH
Q 013596 330 AAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGM 409 (439)
Q Consensus 330 p~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~A~ 409 (439)
|+++ +.++.++. |++.. ....+|+++|+..+.++.....+....+|++++|+|+|+++|+
T Consensus 212 pega----~~~~~s~~-g~~~~---------------~~~~~tiadgl~~~~p~~~~~~i~~~~vd~vv~Vsd~ei~~a~ 271 (349)
T PRK08813 212 VEGV----DSMARAIR-GDLRE---------------IAPVATLADGVKVKIPGFLTRRLCSSLLDDVVIVREAELRETL 271 (349)
T ss_pred ECCC----chHHHHHc-CCCcc---------------cCCCCceecccccCCcchhHHHHHHHhCCeEEEECHHHHHHHH
Confidence 9998 56777886 55432 2235799999986544444334445567999999999999999
Q ss_pred HHHHHcCCceEEchhHHHHHHHHHh
Q 013596 410 KLYLILPFKLLSRHGGLWLLVNCLH 434 (439)
Q Consensus 410 ~~L~~~~~~l~~epagA~a~Aal~~ 434 (439)
++|+ ++.++++||++|+++|+++.
T Consensus 272 ~~l~-~~~gl~vE~aga~alAa~~~ 295 (349)
T PRK08813 272 VRLA-LEEHVIAEGAGALALAAGRR 295 (349)
T ss_pred HHHH-HHcCcEEEEcHHHHHHHHHH
Confidence 9885 44599999999999999875
No 28
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=1.9e-47 Score=385.92 Aligned_cols=286 Identities=23% Similarity=0.317 Sum_probs=233.0
Q ss_pred ccccHHHHHHHHHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHH
Q 013596 88 LMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 167 (439)
Q Consensus 88 l~~~l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~ 167 (439)
+.++++||.+|+.. |.+.++ +|||+++++|++.+ |.+||+|+|++|||||||+|++.++
T Consensus 3 ~~~~~~~i~~A~~~--------------i~~~i~-~TPl~~~~~l~~~~------g~~l~~K~E~~nptGS~K~R~a~~~ 61 (338)
T PRK06608 3 LLQNPQNIAAAHNR--------------IKQYLH-LTPIVHSESLNEML------GHEIFFKVESLQKTGAFKVRGVLNH 61 (338)
T ss_pred CCCCHHHHHHHHHH--------------HhCcCc-CCCccchHhHHHHh------CCEEEEEeCCCCCCCCcHHHHHHHH
Confidence 45668999999874 778885 79999999999987 7899999999999999999999999
Q ss_pred HHHHHHhCC-CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHH
Q 013596 168 ALLAKRLGK-TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEA 246 (439)
Q Consensus 168 ~~~a~~~g~-~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a 246 (439)
+..+.+.|. .++|+++|+||||+++|++|+.+|++|+||||+.. ++.|+++|+.|||+|+.++. .+++.+.+
T Consensus 62 v~~a~~~g~~~~~vv~~SsGN~g~alA~~a~~~G~~~~vv~p~~~---~~~k~~~l~~~GA~V~~~~~----~~~~~~~a 134 (338)
T PRK06608 62 LLELKEQGKLPDKIVAYSTGNHGQAVAYASKLFGIKTRIYLPLNT---SKVKQQAALYYGGEVILTNT----RQEAEEKA 134 (338)
T ss_pred HHHhhhhcCcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHhCCCEEEEECC----HHHHHHHH
Confidence 999988776 25788999999999999999999999999999975 46789999999999999963 35555544
Q ss_pred HHHHHHccCCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEE
Q 013596 247 IRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRL 325 (439)
Q Consensus 247 ~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrv 325 (439)
.+ .+ +...|++++++|+++ ..++.+++.|+.+| ++..||+||+|+|+||+++|++.+++ .+|.+||
T Consensus 135 ~~--~~--~~~~~~~~~~~~~~~-----~~g~~t~a~Ei~~q----~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~v 201 (338)
T PRK06608 135 KE--DE--EQGFYYIHPSDSDST-----IAGAGTLCYEALQQ----LGFSPDAIFASCGGGGLISGTYLAKELISPTSLL 201 (338)
T ss_pred HH--HH--hCCCEEcCCCCCHHH-----hccHHHHHHHHHHh----cCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEE
Confidence 43 22 234577666644332 36788888887665 45469999999999999999999987 6899999
Q ss_pred EEEecCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCcccccccCCCCCCCc-hhhhhhcCCcEEEEeCHHH
Q 013596 326 IGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPE-HSFLKDEGRAEYYNVTDDE 404 (439)
Q Consensus 326 igVep~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~-~~~l~~~~~~~~v~VsD~e 404 (439)
|||||+++ ..+..++..|++... ...+.++++|++++.++.. +..++. .|++++|+|+|
T Consensus 202 igVep~~~----~~~~~s~~~g~~~~~--------------~~~~~t~~~gl~~~~~~~~~~~~~~~--~d~~v~Vsd~e 261 (338)
T PRK06608 202 IGSEPLNA----NDAYLSLKNNKIYRL--------------NYSPNTIADGLKTLSVSARTFEYLKK--LDDFYLVEEYE 261 (338)
T ss_pred EEEeeCCC----hHHHHHHHcCCeEeC--------------CCCCCCeecccCCCCCCHHHHHHHHh--CCCEEEECHHH
Confidence 99999998 567788888876531 1235789999987666554 344444 48899999999
Q ss_pred HHHHHHHHHHcCCceEEchhHHHHHHHHHhh
Q 013596 405 ALEGMKLYLILPFKLLSRHGGLWLLVNCLHK 435 (439)
Q Consensus 405 a~~A~~~L~~~~~~l~~epagA~a~Aal~~~ 435 (439)
+++++++|+. +.|+++||++|+++|+++..
T Consensus 262 ~~~a~~~l~~-~~gi~vepssaa~laa~~~~ 291 (338)
T PRK06608 262 IYYWTAWLTH-LLKVICEPSSAINMVAVVNW 291 (338)
T ss_pred HHHHHHHHHH-HcCcEEchHHHHHHHHHHhh
Confidence 9999998854 45999999999999998865
No 29
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=1.9e-47 Score=383.06 Aligned_cols=284 Identities=24% Similarity=0.269 Sum_probs=227.0
Q ss_pred cHHHHHHHHHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHH
Q 013596 91 ALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALL 170 (439)
Q Consensus 91 ~l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~ 170 (439)
+++||.+|+. +|.++++ +|||+++++|++.+ +.+||+|+|++|||||||||++.+++..
T Consensus 2 ~~~~i~~a~~--------------~i~~~i~-~TPl~~~~~l~~~~------g~~l~~K~E~~nptGS~K~R~a~~~i~~ 60 (317)
T TIGR02991 2 TLQDIERAAA--------------RISGRVE-ETPLVESPSLSELC------GVPVHLKLEHRQTTGSFKLRGATNAVLS 60 (317)
T ss_pred CHHHHHHHHH--------------HHhCcCC-CCCceechhhHHhh------CCeEEEEeccCCCCCCcHHHHHHHHHHh
Confidence 4778888877 4888995 79999999999877 7899999999999999999999999987
Q ss_pred HHHhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 013596 171 AKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (439)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (439)
+.+......|+++|+||||+|+|++|+++|++|+||||+.. ++.|+++|+.|||+|+.++. +++++.+.+.+ +
T Consensus 61 ~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~v~~p~~~---~~~k~~~~~~~GA~V~~~~~---~~~~~~~~a~~-~ 133 (317)
T TIGR02991 61 LSDTQRAAGVVAASTGNHGRALAYAAAEEGVRATICMSELV---PQNKVDEIRRLGAEVRIVGR---SQDDAQEEVER-L 133 (317)
T ss_pred hhHhccCCeEEEECCCHHHHHHHHHHHHhCCCEEEEcCCCC---CHHHHHHHHHcCCEEEEeCC---CHHHHHHHHHH-H
Confidence 66433344678999999999999999999999999999975 46789999999999999974 46777665544 3
Q ss_pred HHccCCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEEEe
Q 013596 251 VTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVE 329 (439)
Q Consensus 251 ~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVe 329 (439)
.++ ..+|++++++|+. ...+|.++|+|+.+|+ + .+|+||+|+|+||+++|++.+++ .+|++||||||
T Consensus 134 ~~~--~g~~~~~~~~n~~-----~~~g~~t~a~Ei~~q~----~-~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigve 201 (317)
T TIGR02991 134 VAD--RGLTMLPPFDHPD-----IVAGQGTLGLEVVEQM----P-DLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVS 201 (317)
T ss_pred HHh--cCCEeeCCCCChH-----HHhhHHHHHHHHHHhC----C-CCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 332 2456665554332 3378999999987764 4 47999999999999999999998 68999999999
Q ss_pred cCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCcccccccCCCCCC--Cc-hhhhhhcCCcEEEEeCHHHHH
Q 013596 330 AAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVG--PE-HSFLKDEGRAEYYNVTDDEAL 406 (439)
Q Consensus 330 p~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg--~~-~~~l~~~~~~~~v~VsD~ea~ 406 (439)
|+++ ..+..++..|++.. ....+|+++||.. +++ .. ...+.+..+|++++|+|+|++
T Consensus 202 p~~~----~~~~~s~~~g~~~~---------------~~~~~tia~~l~~-g~~~~~~~~~~~~~~~vd~~v~V~d~e~~ 261 (317)
T TIGR02991 202 MERG----AAMKASLQAGRPVL---------------VAELPTLADSLGG-GIGLDNRVTFAMCKALLDEIVLVSEAEIA 261 (317)
T ss_pred ECCc----hHHHHHHHcCCccc---------------CCCCCChhhhhhh-ccCCCCHHHHHHHHHhCCeEEEECHHHHH
Confidence 9987 46777887777643 1236789998852 222 22 223334567999999999999
Q ss_pred HHHHHHHHcCCceEEchhHHHHHHHHHhh
Q 013596 407 EGMKLYLILPFKLLSRHGGLWLLVNCLHK 435 (439)
Q Consensus 407 ~A~~~L~~~~~~l~~epagA~a~Aal~~~ 435 (439)
+++++|+. ..++++||++|+++|+++..
T Consensus 262 ~a~~~l~~-~~g~~ve~s~a~~~Aal~~~ 289 (317)
T TIGR02991 262 AGIRHAYA-EEREIVEGAGAVGIAALLAG 289 (317)
T ss_pred HHHHHHHH-hCCcEEcchHHHHHHHHHcC
Confidence 99999864 44999999999999999853
No 30
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=2.2e-47 Score=383.29 Aligned_cols=286 Identities=19% Similarity=0.256 Sum_probs=232.9
Q ss_pred cccHHHHHHHHHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHH
Q 013596 89 MYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 168 (439)
Q Consensus 89 ~~~l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~ 168 (439)
+++++++.+|+++ |+++++ +|||++++++++.+ +.+||+|+|++|||||||||++.+++
T Consensus 5 ~~~~~~i~~a~~~--------------i~~~~~-~TPl~~~~~l~~~~------g~~i~~K~E~~nptGS~K~R~a~~~i 63 (321)
T PRK07048 5 LPTYDDVAAAAAR--------------LAGVAH-RTPVLTSRTADART------GAQVFFKCENFQRMGAFKFRGAYNAL 63 (321)
T ss_pred cCCHHHHHHHHHH--------------hhCCCC-CCCCccchhhHHhc------CCeEEEEeccCCCCCCeeHHHHHHHH
Confidence 5568889888874 889995 79999999998876 78999999999999999999999999
Q ss_pred HHHHHhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHH
Q 013596 169 LLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIR 248 (439)
Q Consensus 169 ~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~ 248 (439)
..+.+.++...|+++|+||||+|+|++|+.+|++|+||||+.. ++.|+++|+.|||+|+.++. .++++.+.+ +
T Consensus 64 ~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~vvvp~~~---~~~k~~~~~~~GAeV~~~~~---~~~~~~~~a-~ 136 (321)
T PRK07048 64 SQFSPEQRRAGVVTFSSGNHAQAIALSARLLGIPATIVMPQDA---PAAKVAATRGYGGEVVTYDR---YTEDREEIG-R 136 (321)
T ss_pred HhhhHhhcCCcEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHHCCCEEEEECC---CHHHHHHHH-H
Confidence 8776544445688999999999999999999999999999976 46799999999999999974 356655444 3
Q ss_pred HHHHccCCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEE
Q 013596 249 DWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIG 327 (439)
Q Consensus 249 ~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvig 327 (439)
++.++ ...|++++++|+++ ..+|.++|.|+.+|+ + .||+||+|+|+||+++|++.+++ .+|+++|||
T Consensus 137 ~l~~~--~g~~~~~~~~~~~~-----~~g~~t~~~EI~~q~----~-~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vig 204 (321)
T PRK07048 137 RLAEE--RGLTLIPPYDHPHV-----IAGQGTAAKELFEEV----G-PLDALFVCLGGGGLLSGCALAARALSPGCKVYG 204 (321)
T ss_pred HHHHh--cCCEEECCCCCcch-----hhccchHHHHHHhhc----C-CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEE
Confidence 33332 34566666654432 368888998887665 4 69999999999999999999998 689999999
Q ss_pred EecCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCcccccccCCCCCCCc-hhhhhhcCCcEEEEeCHHHHH
Q 013596 328 VEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPE-HSFLKDEGRAEYYNVTDDEAL 406 (439)
Q Consensus 328 Vep~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~-~~~l~~~~~~~~v~VsD~ea~ 406 (439)
|||+++ +.+..++..|+... ...++|+++|+..+.+++. ++.+ +...|+++.|+|+|++
T Consensus 205 vep~~~----~~~~~s~~~g~~~~---------------~~~~~tia~g~~~~~~~~~~~~~~-~~~~d~~~~V~d~e~~ 264 (321)
T PRK07048 205 VEPEAG----NDGQQSFRSGEIVH---------------IDTPRTIADGAQTQHLGNYTFPII-RRLVDDIVTVSDAELV 264 (321)
T ss_pred EeeCCC----hhHHHHHHcCCccc---------------CCCCCCcccccccCCccHHHHHHH-HHhCCceEEECHHHHH
Confidence 999997 46777888886542 2236899999987777765 3444 3467999999999999
Q ss_pred HHHHHHHHcCCceEEchhHHHHHHHHHhh
Q 013596 407 EGMKLYLILPFKLLSRHGGLWLLVNCLHK 435 (439)
Q Consensus 407 ~A~~~L~~~~~~l~~epagA~a~Aal~~~ 435 (439)
+++++|+ ++.|+++||++++++|+++..
T Consensus 265 ~a~~~l~-~~~gi~~eps~a~~laa~~~~ 292 (321)
T PRK07048 265 DAMRFFA-ERMKIVVEPTGCLGAAAALRG 292 (321)
T ss_pred HHHHHHH-HhCCceeccHHHHHHHHHHhC
Confidence 9999885 445999999999999998864
No 31
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=2.8e-47 Score=395.04 Aligned_cols=314 Identities=15% Similarity=0.115 Sum_probs=234.2
Q ss_pred cccHHHHHHHHHHhhCCchhHHHHHHHHhh-----hcCCCCcccchhhhhhHhcC--CCCCCCeEEEEeCCCCC-CCchh
Q 013596 89 MYALSELESALHKLADDRDFQEELSGILRD-----YVGRETPLYFAERLTEHYRR--PNGGGPHIYLKREDLNH-TGAHK 160 (439)
Q Consensus 89 ~~~l~~l~~a~~~~~~~~~f~~~~~~~i~~-----~ig~~TPL~~~~~l~~~l~~--~~~~g~~IylK~E~~np-TGSfK 160 (439)
+++++||.+|+.++.....|... +... .+ ++|||++++.+++.+|. ..+.+.+||+|+|++|| |||||
T Consensus 40 ~~~~~di~~A~~~i~~~~~~~~~---~~~~~~~~~~~-~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK 115 (441)
T PRK02991 40 GLTEADVQDAEARLKRFAPYLAK---AFPETAATGGI-IESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIK 115 (441)
T ss_pred CCCHHHHHHHHHHHHhhhhhhhh---hCccccccCCc-cCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChH
Confidence 35689999998863332111111 1111 16 47999999999987610 00002799999999999 99999
Q ss_pred hhHHHHHHHHH-----HHhCC--------------------CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhH
Q 013596 161 INNAVGQALLA-----KRLGK--------------------TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQ 215 (439)
Q Consensus 161 ~Rga~~~~~~a-----~~~g~--------------------~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~ 215 (439)
+||+++++... ++.|. .++|+++|+||||+|+|++|+.+|++|+||||++. +
T Consensus 116 ~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a---~ 192 (441)
T PRK02991 116 ARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFRQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADA---R 192 (441)
T ss_pred HHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhhhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCC---C
Confidence 99999998653 33342 13689999999999999999999999999999976 5
Q ss_pred HHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHH---H
Q 013596 216 ALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALE---K 292 (439)
Q Consensus 216 ~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e---~ 292 (439)
+.|+++|+.|||+|+.++. +++++.+.+.+. .++ .+..|++++++++ .++.||.|+|.|+.+|+.. .
T Consensus 193 ~~K~~~ir~~GAeVi~~~~---~~~~a~~~A~~l-a~~-~~~~~~~~~~~~~-----~~iaG~~Tig~EI~eQl~~~~~~ 262 (441)
T PRK02991 193 QWKKDKLRSHGVTVVEYEG---DYGVAVEEGRKA-AES-DPNCYFIDDENSR-----TLFLGYAVAGLRLKAQLAEQGIV 262 (441)
T ss_pred HHHHHHHHhCCCEEEEECC---CHHHHHHHHHHH-HHh-cCCeEeCCCCCch-----hHHHhHHHHHHHHHHHhhhccCc
Confidence 7899999999999999874 578887766553 332 2235665443221 3458999999999988742 1
Q ss_pred hC-CCCCEEEEcCCchHHHHHHHHHHhc--CCCcEEEEEecCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccC
Q 013596 293 WG-GKPDVLIACVGGGSNAMGLFHEFVN--DKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIE 369 (439)
Q Consensus 293 ~g-~~~d~vvvpvG~GG~~aGi~~~~~~--~p~vrvigVep~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~ 369 (439)
.+ ..||+||+|+|+||+++|++.+++. .|++|||+|||+++ ..+..++..|++.... ..+-...
T Consensus 263 vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga----~~~~~s~~~G~~~~~~---------~~~~g~~ 329 (441)
T PRK02991 263 VDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHS----PCMLLGLMTGLHDQIS---------VQDIGID 329 (441)
T ss_pred cccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCC----hHHHHHHhcCCCccee---------ccccCCC
Confidence 11 2478999999999999999999983 68899999999998 5678888888754211 0000012
Q ss_pred CcccccccCCCCCCCch-hhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHHHHHHh
Q 013596 370 PHSISAGLDYPGVGPEH-SFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVNCLH 434 (439)
Q Consensus 370 ~~tia~GL~~~~vg~~~-~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~Aal~~ 434 (439)
.+|+++||.++.+++.. ..++ ..++++++|+|+|+++++++|+ ++.++++||++|+++|+++.
T Consensus 330 ~~Tiadgl~~~~~~~~~~~~~~-~~vd~~v~VsD~ei~~a~~~L~-~~~gi~vEpS~AaalAa~~~ 393 (441)
T PRK02991 330 NLTAADGLAVGRASGFVGRAME-RLLDGVYTVSDETLYRLLGLLA-DTEGIRLEPSALAGMAGPVR 393 (441)
T ss_pred CcchhhhhcCCCcchhHHHHHH-HhCCeEEEECHHHHHHHHHHHH-HhcCceeeHHHHHHHHHHHH
Confidence 57999999987776653 4454 4679999999999999999885 55599999999999999864
No 32
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=1.6e-47 Score=392.57 Aligned_cols=267 Identities=24% Similarity=0.312 Sum_probs=223.3
Q ss_pred CcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHHHHHHHHHHHcCCeE
Q 013596 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQC 203 (439)
Q Consensus 124 TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~ 203 (439)
|||+++++|++.+ +.+||+|+|++|||||||+|++.+++..+.+.++.++|+++|+||||+++|++|+++|++|
T Consensus 1 TPl~~~~~ls~~~------g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~ 74 (380)
T TIGR01127 1 TPLIYSTTLSDIT------GSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQRGVVAASAGNHAQGVAYAAKKFGIKA 74 (380)
T ss_pred CCceehHHHHHHh------CCeEEEEecCCCCCCCcHHHHHHHHHHhcchhccCCEEEEECCCHHHHHHHHHHHHcCCCE
Confidence 8999999999987 7899999999999999999999999998888777667899999999999999999999999
Q ss_pred EEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhhhHHhHH
Q 013596 204 IVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGK 283 (439)
Q Consensus 204 ~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig~ 283 (439)
+||||+.. +..|+++|+.|||+|+.++. +++++.+.+.+. .++ . ..|++++++++ .+..+|.++|.
T Consensus 75 ~iv~p~~~---~~~k~~~~~~~GA~V~~~~~---~~~~a~~~a~~~-~~~-~-~~~~~~~~~~~-----~~~~g~~t~~~ 140 (380)
T TIGR01127 75 VIVMPESA---PPSKVKATKSYGAEVILHGD---DYDEAYAFATSL-AEE-E-GRVFVHPFDDE-----FVMAGQGTIGL 140 (380)
T ss_pred EEEEcCCC---cHHHHHHHHHCCCEEEEECC---CHHHHHHHHHHH-HHh-c-CCEecCCCCCh-----hhhhhhHHHHH
Confidence 99999976 56799999999999999863 588888776553 332 2 34554444322 34588999999
Q ss_pred HHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEEEecCCCCCCchhhhhhhhcCCeeeeccchhhhccc
Q 013596 284 ETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQN 362 (439)
Q Consensus 284 E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVep~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~ 362 (439)
|+.+|+ + .+|+||+|+|+||+++|++.+++ .+|++|||||||+++ ..++.++..|++...
T Consensus 141 Ei~~q~----~-~~D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~----~~~~~~~~~g~~~~~---------- 201 (380)
T TIGR01127 141 EIMEDI----P-DVDTVIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGA----PSMYESLREGKIKAV---------- 201 (380)
T ss_pred HHHHhC----C-CCCEEEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCC----hHHHHHHHcCCceec----------
Confidence 887664 4 59999999999999999999998 689999999999998 567888888887642
Q ss_pred cCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHHHHHHhh
Q 013596 363 EDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVNCLHK 435 (439)
Q Consensus 363 ~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~Aal~~~ 435 (439)
....|+++|+.++.++.....+.+..+|++++|+|+|+.+|+++|+ ++.++++||++|+++|+++..
T Consensus 202 -----~~~~~~a~g~~~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~-~~~gi~~e~s~a~~laa~~~~ 268 (380)
T TIGR01127 202 -----ESVRTIADGIAVKKPGDLTFNIIKEYVDDVVTVDEEEIANAIYLLL-ERHKILAEGAGAAGVAALLEQ 268 (380)
T ss_pred -----CCCCCeecchhCCCccHHHHHHHHHhCCEEEEECHHHHHHHHHHHH-HhcCeEechHHHHHHHHHHhC
Confidence 2367999999876666543334445789999999999999999885 455999999999999999864
No 33
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=2.3e-46 Score=386.93 Aligned_cols=322 Identities=16% Similarity=0.101 Sum_probs=238.5
Q ss_pred cccccHHHHHHHHHHhhCCchhHHHHHHHHh--hhcCCCCcccchhhhhhHhcC--CCCCCCeEEEEeCCCCC-CCchhh
Q 013596 87 TLMYALSELESALHKLADDRDFQEELSGILR--DYVGRETPLYFAERLTEHYRR--PNGGGPHIYLKREDLNH-TGAHKI 161 (439)
Q Consensus 87 ~l~~~l~~l~~a~~~~~~~~~f~~~~~~~i~--~~ig~~TPL~~~~~l~~~l~~--~~~~g~~IylK~E~~np-TGSfK~ 161 (439)
.+.++++||.+|..++..-..|.+.+-.-.. ..+ .+|||++++++++.++. ....+.+||+|+|++|| |||||+
T Consensus 33 ~~~~~~~~i~~a~~~~~~~~~~~~~~fp~~~~~~~~-~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKd 111 (431)
T TIGR02035 33 KVGLKAQEVAEAEARLQRFAPYIAKVFPETAATGGI-IESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKA 111 (431)
T ss_pred cCCCCHHHHHHHHHHHHhhhhhHHHhCccccccCCc-cCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHH
Confidence 4567899999998874332111111111111 145 47999999999985510 00125799999999999 999999
Q ss_pred hHHHHHHHH-----HHHhCC--------------------CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHH
Q 013596 162 NNAVGQALL-----AKRLGK--------------------TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQA 216 (439)
Q Consensus 162 Rga~~~~~~-----a~~~g~--------------------~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~ 216 (439)
|++.+++.. +.+.|. +++|+++|+||||+++|++|+.+|++|+||||++. ++
T Consensus 112 RGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a---~~ 188 (431)
T TIGR02035 112 RGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKFKDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADA---KQ 188 (431)
T ss_pred HHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhhhhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCC---CH
Confidence 999998864 444443 25788999999999999999999999999999976 67
Q ss_pred HHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHH---h
Q 013596 217 LNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEK---W 293 (439)
Q Consensus 217 ~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~---~ 293 (439)
.|+++|+.|||+|+.++. +++++.+.+.+. .++ .+..|++++.+..+ ++.||.++|.|+.+|+... .
T Consensus 189 ~K~~~ir~~GAeVv~~~~---~~~~a~~~A~~l-a~~-~~~~~~~d~~n~~n-----~~aG~~T~g~EI~eQl~~~~~~~ 258 (431)
T TIGR02035 189 WKKDKLRSKGVTVVEYES---DYGVAVEEGRKN-ADA-DPMCYFVDDENSRN-----LFLGYAVAASRLKKQFDKKGIVV 258 (431)
T ss_pred HHHHHHHHcCCEEEEECC---CHHHHHHHHHHH-HHh-cCCeEECCCCCccc-----HHhhHHHHHHHHHHhhhcccccc
Confidence 899999999999999974 688888777653 332 33456665532222 3389999999999887321 1
Q ss_pred C-CCCCEEEEcCCchHHHHHHHHHHh-c-CCCcEEEEEecCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCC
Q 013596 294 G-GKPDVLIACVGGGSNAMGLFHEFV-N-DKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEP 370 (439)
Q Consensus 294 g-~~~d~vvvpvG~GG~~aGi~~~~~-~-~p~vrvigVep~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~ 370 (439)
+ ..||+|++|+|+||+++|++.+++ . +|++|||+|||+++ ..+..++..|+..... .+ +-....
T Consensus 259 d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s----~~~~~s~~~g~~~~~~------~~---~~g~~~ 325 (431)
T TIGR02035 259 DKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHS----PCMLLGVYTGLHEKIS------VQ---DIGIDN 325 (431)
T ss_pred ccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCC----HHHHHHHhcCCCcccc------cc---ccCCCC
Confidence 1 257899999999999999999998 3 78999999999998 4567778777643210 00 000135
Q ss_pred cccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHHHHHHhhh
Q 013596 371 HSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVNCLHKL 436 (439)
Q Consensus 371 ~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~Aal~~~~ 436 (439)
+|+++||+++.++.....+.+..+|++++|+|+|+++++++|+ ++.|+++||++|++++++...+
T Consensus 326 ~T~AdGlav~~p~~~~~~~~~~~vd~vv~VsD~ei~~a~~~L~-~~egi~vEpSsaa~laa~~~l~ 390 (431)
T TIGR02035 326 ITAADGLAVGRPSGFVGRLMEPLLSGIYTVDDYTLYDLLRILA-ESEGKRLEPSALAGMEGPVRLL 390 (431)
T ss_pred CceeccccCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHH-HHcCCeEcHHHHHHHHHHHHHH
Confidence 7999999987777654333334679999999999999999885 4459999999999999887543
No 34
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=1.9e-46 Score=374.76 Aligned_cols=282 Identities=24% Similarity=0.278 Sum_probs=227.1
Q ss_pred cccHHHHHHHHHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHH
Q 013596 89 MYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 168 (439)
Q Consensus 89 ~~~l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~ 168 (439)
+++++||.+|+++ |.++++ +|||++++.++. ++.+||+|+|++|||||||||++++++
T Consensus 4 ~~~~~~i~~a~~~--------------i~~~i~-~TPl~~~~~l~~-------~~~~i~~K~E~~nptGS~K~R~a~~~~ 61 (310)
T PRK08246 4 MITRSDVRAAAQR--------------IAPHIR-RTPVLEADGAGF-------GPAPVWLKLEHLQHTGSFKARGAFNRL 61 (310)
T ss_pred CCCHHHHHHHHHH--------------HhCcCC-CCCeeecccccc-------CCCEEEEEECCCCCCCCCHHHHHHHHH
Confidence 5679999999885 888885 799999998874 258999999999999999999999998
Q ss_pred HHHHHhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHH
Q 013596 169 LLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIR 248 (439)
Q Consensus 169 ~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~ 248 (439)
..+.+ + .+.|+++|+||||+|+|++|+.+|++|+||||+.. ++.|+++|+.|||+|+.++. +++++.+.+.+
T Consensus 62 ~~~~~-~-~~~vv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~---~~~k~~~~~~~GA~V~~~~~---~~~~~~~~a~~ 133 (310)
T PRK08246 62 LAAPV-P-AAGVVAASGGNAGLAVAYAAAALGVPATVFVPETA---PPAKVARLRALGAEVVVVGA---EYADALEAAQA 133 (310)
T ss_pred Hhhcc-c-CCeEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCC---cHHHHHHHHHCCCEEEEeCC---CHHHHHHHHHH
Confidence 87765 3 45688999999999999999999999999999875 46689999999999999974 47777766644
Q ss_pred HHHHccCCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHhcCCCcEEEEE
Q 013596 249 DWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGV 328 (439)
Q Consensus 249 ~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~~~p~vrvigV 328 (439)
. .++ ...|++++++|+ ..+.+|.++|+|+.+|+ + .||+||+|+|+||+++|++.+++. .+|||+|
T Consensus 134 ~-~~~--~g~~~~~~~~n~-----~~i~g~~t~~~Ei~eq~----~-~~D~iv~~vG~GG~~~Gi~~~~~~--~~~vi~v 198 (310)
T PRK08246 134 F-AAE--TGALLCHAYDQP-----EVLAGAGTLGLEIEEQA----P-GVDTVLVAVGGGGLIAGIAAWFEG--RARVVAV 198 (310)
T ss_pred H-HHh--cCCEeCCCCCCh-----hhhcchHHHHHHHHHhc----C-CCCEEEEecCccHHHHHHHHHhcC--CCEEEEE
Confidence 3 332 345666555432 23468899999988775 3 599999999999999999999964 4899999
Q ss_pred ecCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHHH
Q 013596 329 EAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEG 408 (439)
Q Consensus 329 ep~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~A 408 (439)
||+++ ..+..++..|++... ....+++++|+.+.++.....+.+...+++++|+|+|++++
T Consensus 199 e~~~~----~~~~~s~~~g~~~~~---------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Vsd~e~~~a 259 (310)
T PRK08246 199 EPEGA----PTLHAALAAGEPVDV---------------PVSGIAADSLGARRVGEIAFALARAHVVTSVLVSDEAIIAA 259 (310)
T ss_pred eeCCC----hHHHHHHHcCCcccC---------------CCCCceeccccCCCccHHHHHHHHhcCCeEEEECHHHHHHH
Confidence 99998 567888888886531 11334567777766665444444556899999999999999
Q ss_pred HHHHHHcCCceEEchhHHHHHHHHHhh
Q 013596 409 MKLYLILPFKLLSRHGGLWLLVNCLHK 435 (439)
Q Consensus 409 ~~~L~~~~~~l~~epagA~a~Aal~~~ 435 (439)
+++|+. ..++++||++|+++|+++..
T Consensus 260 ~~~l~~-~egi~~e~s~aa~lAa~~~~ 285 (310)
T PRK08246 260 RRALWE-ELRLAVEPGAATALAALLSG 285 (310)
T ss_pred HHHHHH-HcCceeehHHHHHHHHHHhC
Confidence 998854 44999999999999998653
No 35
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=2.5e-46 Score=374.75 Aligned_cols=271 Identities=19% Similarity=0.256 Sum_probs=217.5
Q ss_pred CCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCC--CeeEEecCcchHHHHHHHHHHHcC
Q 013596 123 ETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK--TRIIAETGAGQHGVATATVCARFG 200 (439)
Q Consensus 123 ~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~--~~~Vv~aSsGNhG~AlA~aa~~~G 200 (439)
+|||+++++|++.+ +.+||+|+|++|||||||||++.+++..+.+.+. .+.|+++|+||||+|+|++|+.+|
T Consensus 1 ~TPl~~~~~l~~~~------g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~~~vv~aSsGN~g~alA~~a~~~G 74 (316)
T cd06448 1 KTPLIESTALSKTA------GCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGLNECVHVVCSSGGNAGLAAAYAARKLG 74 (316)
T ss_pred CCCccccchhhHhh------CCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhcccCCeEEEeCCcHHHHHHHHHHHHcC
Confidence 49999999999876 7899999999999999999999999999988873 457889999999999999999999
Q ss_pred CeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhhhHH
Q 013596 201 LQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAV 280 (439)
Q Consensus 201 i~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ 280 (439)
++|+||||+.. ++.|+++|+.|||+|+.++.. .++++.+.+ +++.+ .....|++++++|+ + ...+|.+
T Consensus 75 ~~~~iv~p~~~---~~~k~~~l~~~GA~v~~~~~~--~~~~~~~~~-~~l~~-~~~~~~~~~~~~n~--~---~~~g~~t 142 (316)
T cd06448 75 VPCTIVVPEST---KPRVVEKLRDEGATVVVHGKV--WWEADNYLR-EELAE-NDPGPVYVHPFDDP--L---IWEGHSS 142 (316)
T ss_pred CCEEEEECCCC---CHHHHHHHHHcCCEEEEECCc--hHHHHHHHH-HHHHh-ccCCcEEeCCCCCc--h---hhccccH
Confidence 99999999975 467899999999999998742 144444333 33332 22245566655433 2 2378899
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cC-CCcEEEEEecCCCCCCchhhhhhhhcCCeeeeccchhh
Q 013596 281 IGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-ND-KDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSY 358 (439)
Q Consensus 281 ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~-p~vrvigVep~~s~~~~~~~~~sl~~G~~~~~~g~~~~ 358 (439)
+|.|+.+|+.+. ..||+||+|+|+||+++|++.+|+ .+ |+++||||||+++ ..+..++..|++..
T Consensus 143 ~~~Ei~~q~~~~--~~~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~----~~~~~~~~~g~~~~------- 209 (316)
T cd06448 143 MVDEIAQQLQSQ--EKVDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGA----HSLNASLKAGKLVT------- 209 (316)
T ss_pred HHHHHHHHcccc--CCCCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCC----hHHHHHHHcCCcEe-------
Confidence 999988776221 159999999999999999999998 44 8999999999998 46777888777643
Q ss_pred hccccCCCccCCcccccccCCCCCCCc-hhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHHHHHHh
Q 013596 359 LLQNEDGQIIEPHSISAGLDYPGVGPE-HSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVNCLH 434 (439)
Q Consensus 359 ~~~~~~g~~~~~~tia~GL~~~~vg~~-~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~Aal~~ 434 (439)
....+|+++||+.+.+++. +..++ ...+++++|+|+|+++++++|+. ++|+++||++|+++|++++
T Consensus 210 --------~~~~~t~a~glg~~~~~~~~~~~~~-~~~~~~v~Vsd~e~~~a~~~l~~-~~gi~~~~ssaa~laa~~~ 276 (316)
T cd06448 210 --------LPKITSVATSLGAKTVSSQALEYAQ-EHNIKSEVVSDRDAVQACLRFAD-DERILVEPACGAALAVVYS 276 (316)
T ss_pred --------cCCCCchhhccCCCCcCHHHHHHHH-hcCCeEEEECHHHHHHHHHHHHH-HcCceechhHHHHHHHHHh
Confidence 1235799999987766654 33343 35789999999999999999864 4599999999999999985
No 36
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=5.1e-46 Score=372.82 Aligned_cols=284 Identities=26% Similarity=0.287 Sum_probs=224.8
Q ss_pred HHHHHHHHHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHH
Q 013596 92 LSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLA 171 (439)
Q Consensus 92 l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a 171 (439)
++||.++++ ++.++++ +|||+++++|++.+ +.+||+|+|++|||||||||++.+++..+
T Consensus 4 ~~~i~~a~~--------------~~~~~i~-~TPLv~~~~l~~~~------g~~i~~K~E~~nptgS~KdR~a~~~~~~l 62 (317)
T PRK06815 4 FDAILEAHQ--------------RLRPQVR-VTPLEHSPLLSQHT------GCEVYLKCEHLQHTGSFKFRGASNKLRLL 62 (317)
T ss_pred HHHHHHHHH--------------HhhCCCC-CCCccccHhHHHhh------CCeEEEEecCCCCCCCcHHHHHHHHHHhc
Confidence 567777777 4888885 89999999999877 78999999999999999999999999865
Q ss_pred HHhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 013596 172 KRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (439)
Q Consensus 172 ~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~ 251 (439)
.+..+.+.|+++|+||||+|+|++|+.+|++|+||||+.. ++.|+++|+.+||+|+.++. +++++...+.+ +.
T Consensus 63 ~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~---~~~k~~~~~~~GA~V~~~~~---~~~~~~~~a~~-~~ 135 (317)
T PRK06815 63 NEAQRQQGVITASSGNHGQGVALAAKLAGIPVTVYAPEQA---SAIKLDAIRALGAEVRLYGG---DALNAELAARR-AA 135 (317)
T ss_pred chhhcCceEEEECCChHHHHHHHHHHHhCCCEEEEECCCC---CHHHHHHHHHCCCEEEEECC---CHHHHHHHHHH-HH
Confidence 4433344578899999999999999999999999999976 46789999999999999974 46666655543 23
Q ss_pred HccCCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEEEec
Q 013596 252 TNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEA 330 (439)
Q Consensus 252 ~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVep 330 (439)
++ ...|+++++++++ +..+|.++|+|+.+|+ + .||+||+|+|+||+++|++.+++ .+|++|||||||
T Consensus 136 ~~--~~~~~~~~~~~~~-----~~~g~~t~a~Ei~~q~----~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep 203 (317)
T PRK06815 136 EQ--QGKVYISPYNDPQ-----VIAGQGTIGMELVEQQ----P-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWP 203 (317)
T ss_pred Hh--cCCEEecCCCChh-----hhcchhHHHHHHHHhc----C-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 22 2345555554333 2368888899987765 4 58999999999999999999998 679999999999
Q ss_pred CCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCcccccccCCCCCCCc-h-hhhhhcCCcEEEEeCHHHHHHH
Q 013596 331 AGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPE-H-SFLKDEGRAEYYNVTDDEALEG 408 (439)
Q Consensus 331 ~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~-~-~~l~~~~~~~~v~VsD~ea~~A 408 (439)
+++ ..+..++..|++.. ....+|+++|+.. +.++. . ..+.+.+.++++.|+|+|++++
T Consensus 204 ~~~----~~~~~~~~~g~~~~---------------~~~~~t~~~gl~~-~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a 263 (317)
T PRK06815 204 ANS----PSLYTSLEAGEIVE---------------VAEQPTLSDGTAG-GVEPGAITFPLCQQLIDQKVLVSEEEIKEA 263 (317)
T ss_pred CCC----CcHHHHHHCCCccc---------------CCCCCChhhhhcc-CCcccHHHHHHHHHhCCeEEEECHHHHHHH
Confidence 998 45777888777543 1235678888752 22222 1 2234456799999999999999
Q ss_pred HHHHHHcCCceEEchhHHHHHHHHHhhh
Q 013596 409 MKLYLILPFKLLSRHGGLWLLVNCLHKL 436 (439)
Q Consensus 409 ~~~L~~~~~~l~~epagA~a~Aal~~~~ 436 (439)
+++|+. +.|+++||++++++|+++...
T Consensus 264 ~~~la~-~~gi~vepssg~alaa~~~~~ 290 (317)
T PRK06815 264 MRLIAE-TDRWLIEGAAGVALAAALKLA 290 (317)
T ss_pred HHHHHH-hcCCeEecHHHHHHHHHHhCc
Confidence 998854 459999999999999988743
No 37
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=6.7e-46 Score=383.29 Aligned_cols=285 Identities=21% Similarity=0.237 Sum_probs=226.6
Q ss_pred cccHHHHHHHHHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHH
Q 013596 89 MYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 168 (439)
Q Consensus 89 ~~~l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~ 168 (439)
+.++++|.+|+.+ |.++++ +|||+++++|++.+ |.+||+|+|++|||||||||++.+++
T Consensus 4 ~~~~~~i~~a~~~--------------i~~~i~-~TPl~~~~~l~~~~------g~~l~~K~E~~nptGS~KdR~a~~~i 62 (403)
T PRK07334 4 MVTLADIRAAAAR--------------LAGQVL-RTPCVHSRTLSQIT------GAEVWLKFENLQFTASFKERGALNKL 62 (403)
T ss_pred CcCHHHHHHHHHH--------------HhCCCC-CCCccchHHHHHhh------CCeEEEEeccCCCCCCchHHHHHHHH
Confidence 4578899988884 788896 79999999999887 78999999999999999999999999
Q ss_pred HHHHHhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHH
Q 013596 169 LLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIR 248 (439)
Q Consensus 169 ~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~ 248 (439)
..+.+....+.|+++|+||||+|+|++|+.+|++|+||||... ++.|+++|+.|||+|+.++. +++++.+.+.+
T Consensus 63 ~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~---~~~k~~~~~~~GA~v~~~~~---~~~~~~~~a~~ 136 (403)
T PRK07334 63 LLLTEEERARGVIAMSAGNHAQGVAYHAQRLGIPATIVMPRFT---PTVKVERTRGFGAEVVLHGE---TLDEARAHARE 136 (403)
T ss_pred HhcCHHHhCCcEEEECCcHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHHcCCEEEEECc---CHHHHHHHHHH
Confidence 8765333334578999999999999999999999999999976 46788999999999999863 57787766554
Q ss_pred HHHHccCCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEE
Q 013596 249 DWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIG 327 (439)
Q Consensus 249 ~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvig 327 (439)
+.++ ...|++++++++ ....+|.++|.|+.+| ++ .+|+||+|+|+||+++|++.+++ .+|++||||
T Consensus 137 -l~~~--~~~~~~~~~~~~-----~~~~g~~t~~~Ei~~q----~~-~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ 203 (403)
T PRK07334 137 -LAEE--EGLTFVHPYDDP-----AVIAGQGTVALEMLED----AP-DLDTLVVPIGGGGLISGMATAAKALKPDIEIIG 203 (403)
T ss_pred -HHHh--cCCEecCCCCCH-----HHHHhHHHHHHHHHhc----CC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 3332 245665555432 2347888888887765 44 58999999999999999999998 789999999
Q ss_pred EecCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHH
Q 013596 328 VEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALE 407 (439)
Q Consensus 328 Vep~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~ 407 (439)
|||+++ +.+..++..+.. .....++++||+++.++.....+.+...|++++|+|+|+++
T Consensus 204 ve~~~~----~~~~~~~~~~~~-----------------~~~~~~~~~gi~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~ 262 (403)
T PRK07334 204 VQTELY----PSMYAAIKGVAL-----------------PCGGSTIAEGIAVKQPGQLTLEIVRRLVDDILLVSEADIEQ 262 (403)
T ss_pred EEECCC----chHHHHHhCCCc-----------------cCCCCCccceecCCCccHHHHHHHHHhCCeEEEECHHHHHH
Confidence 999998 355555543211 12356889999865444332334455689999999999999
Q ss_pred HHHHHHHcCCceEEchhHHHHHHHHHhh
Q 013596 408 GMKLYLILPFKLLSRHGGLWLLVNCLHK 435 (439)
Q Consensus 408 A~~~L~~~~~~l~~epagA~a~Aal~~~ 435 (439)
++++|+ +++++++||++|+++|+++..
T Consensus 263 a~~~l~-~~~gi~v~~s~a~~~aa~~~~ 289 (403)
T PRK07334 263 AVSLLL-EIEKTVVEGAGAAGLAALLAY 289 (403)
T ss_pred HHHHHH-HhcCCEEechHHHHHHHHHhC
Confidence 999885 445999999999999998763
No 38
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=1.3e-45 Score=378.75 Aligned_cols=282 Identities=22% Similarity=0.225 Sum_probs=213.7
Q ss_pred HHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhC---CCeeEEecCcchHHHH
Q 013596 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLG---KTRIIAETGAGQHGVA 191 (439)
Q Consensus 115 ~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g---~~~~Vv~aSsGNhG~A 191 (439)
-+.+++| +|||+++++|+... +.+||+|+|++|||||||||++.+++..+.+.| ++.+|+++||||||++
T Consensus 46 ~~~~~ig-~TPLv~~~~l~~~~------g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g~VveaSSGN~g~a 118 (423)
T PLN02356 46 GLIDAIG-NTPLIRINSLSEAT------GCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGGVVTEGSAGSTAIS 118 (423)
T ss_pred hHHhhcC-CCceEECccccccc------CCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCCEEEEeCCHHHHHH
Confidence 3566786 69999999998765 789999999999999999999999999888765 3457888999999999
Q ss_pred HHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCC----CCCH-HHHHH---HHHHHHHHcc---------
Q 013596 192 TATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG----TATL-KDATS---EAIRDWVTNV--------- 254 (439)
Q Consensus 192 lA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~----~~~~-~da~~---~a~~~~~~~~--------- 254 (439)
+|++|+.+|++|+||||+.. ++.|+++|+.|||+|+.++.. ...+ ..+.. ++.+ +.++.
T Consensus 119 lA~~aa~~G~~~~ivvP~~~---s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e-~a~~~~~~~~~~~~ 194 (423)
T PLN02356 119 LATVAPAYGCKCHVVIPDDV---AIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANE-LASKRRKGSETDGI 194 (423)
T ss_pred HHHHHHHcCCcEEEEECCCC---cHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHH-HHHHhhhccccccc
Confidence 99999999999999999976 577899999999999999641 1122 11111 1111 11110
Q ss_pred ----------------------CCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHH
Q 013596 255 ----------------------ETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMG 312 (439)
Q Consensus 255 ----------------------~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aG 312 (439)
....|+++|++|+.+++. .++.| |.|+ ++|+++.+|+||+|+|+||+++|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~a---hg~gT-g~EI----~eQl~g~~D~vVv~vGtGGti~G 266 (423)
T PLN02356 195 HLEKTNGCISEEEKENSLFSSSCTGGFFADQFENLANFRA---HYEGT-GPEI----WEQTQGNLDAFVAAAGTGGTLAG 266 (423)
T ss_pred cccccccccccccccccccccCCCCcEecCccCCcchHHH---HHhhH-HHHH----HHhcCCCCCEEEeCCCchHHHHH
Confidence 034577888888776531 34443 5555 55566679999999999999999
Q ss_pred HHHHHh-cCCCcEEEEEecCCCCCCch-----hhhhhhhcCCeeeeccchhhhccccCCCccCCcccccccCCCCCCCch
Q 013596 313 LFHEFV-NDKDVRLIGVEAAGFGLDSG-----KHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEH 386 (439)
Q Consensus 313 i~~~~~-~~p~vrvigVep~~s~~~~~-----~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~ 386 (439)
++.++| .+|++|||+|||+++..... .++.++..|++.. ...+|+++|++.+.+. .
T Consensus 267 va~~lK~~~P~vkVigVep~~s~~~~~~~~~~~~~~s~~~G~~~~----------------~~~~tia~Gig~~~~~--~ 328 (423)
T PLN02356 267 VSRFLQEKNPNIKCFLIDPPGSGLFNKVTRGVMYTREEAEGRRLK----------------NPFDTITEGIGINRLT--Q 328 (423)
T ss_pred HHHHHHHhCCCCEEEEEecCCCccccccccchhhhhhhhcCCccC----------------CCCCeecCcCcCCCCC--h
Confidence 999998 78999999999998743211 3444555554421 1236899999754322 2
Q ss_pred hhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHHHHHHhh
Q 013596 387 SFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVNCLHK 435 (439)
Q Consensus 387 ~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~Aal~~~ 435 (439)
.+ ....+|+++.|+|+|+++++++|+.+ .|+++||++|+++|+++..
T Consensus 329 ~~-~~~~vD~~v~Vsd~ea~~a~r~L~~~-~Gl~vg~Ssaa~laaa~~l 375 (423)
T PLN02356 329 NF-LMAKLDGAFRGTDKEAVEMSRYLLKN-DGLFVGSSSAMNCVGAVRV 375 (423)
T ss_pred hH-hHHhCCcEEEECHHHHHHHHHHHHHH-CCeeEeECHHHHHHHHHHH
Confidence 23 34467999999999999999999654 4999999999999998874
No 39
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=1.9e-45 Score=365.97 Aligned_cols=285 Identities=25% Similarity=0.303 Sum_probs=231.2
Q ss_pred HHHHHHHHHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHH
Q 013596 92 LSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLA 171 (439)
Q Consensus 92 l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a 171 (439)
+++|.+++.. |.+++| +|||+++++|++.+ +.+||+|+|++|||||||||++.+++..+
T Consensus 1 ~~~~~~~~~~--------------i~~~ig-~TPl~~~~~l~~~~------g~~i~~K~E~~nptgS~Kdr~a~~~l~~~ 59 (304)
T cd01562 1 LEDILAAAAR--------------IKPVVR-RTPLLTSPTLSELL------GAEVYLKCENLQKTGSFKIRGAYNKLLSL 59 (304)
T ss_pred ChHHHHHHHH--------------HhCcCC-CCCcccchhhHHHh------CCeEEEEeccCCCcCCcHHHhHHHHHHhc
Confidence 3577777775 788896 79999999999877 78999999999999999999999999888
Q ss_pred HHhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 013596 172 KRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (439)
Q Consensus 172 ~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~ 251 (439)
.+.++...|+++|+||||.|+|++|+.+|++|+||||+.. ++.|+++|+.+||+|+.++. +++++.+.+.+ +.
T Consensus 60 ~~~~~~~~iv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~---~~~k~~~l~~~Ga~vi~~~~---~~~~~~~~a~~-la 132 (304)
T cd01562 60 SEEERAKGVVAASAGNHAQGVAYAAKLLGIPATIVMPETA---PAAKVDATRAYGAEVVLYGE---DFDEAEAKARE-LA 132 (304)
T ss_pred CHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHHcCCEEEEeCC---CHHHHHHHHHH-HH
Confidence 7766455688999999999999999999999999999875 45688999999999999975 47777766644 33
Q ss_pred HccCCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEEEec
Q 013596 252 TNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEA 330 (439)
Q Consensus 252 ~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVep 330 (439)
++ ...|++++++|+.+. .+|.+++.|+.+|+ + .||+||+|+|+||+++|++.+++ ..|.+|||+|||
T Consensus 133 ~~--~~~~~~~~~~n~~~~-----~g~~~~~~Ei~~q~----~-~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~ 200 (304)
T cd01562 133 EE--EGLTFIHPFDDPDVI-----AGQGTIGLEILEQV----P-DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEP 200 (304)
T ss_pred Hh--cCCEEeCCCCCcchh-----ccHHHHHHHHHHhc----C-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 33 245667777665432 67888888877665 4 39999999999999999999998 688999999999
Q ss_pred CCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHHHHH
Q 013596 331 AGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMK 410 (439)
Q Consensus 331 ~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~A~~ 410 (439)
.++ ..+..++..|+.... ....++++||+++.+......+.+...+.++.|+|+|++++++
T Consensus 201 ~~~----~~~~~~~~~g~~~~~---------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~ 261 (304)
T cd01562 201 EGA----PAMAQSLAAGKPVTL---------------PEVDTIADGLAVKRPGELTFEIIRKLVDDVVTVSEDEIAAAML 261 (304)
T ss_pred CCC----chHHHHHHcCCcccC---------------CCCCcccccccCCCchHHHHHHHHHhCCeEEEECHHHHHHHHH
Confidence 987 456777777765431 2247888898865443322334555679999999999999999
Q ss_pred HHHHcCCceEEchhHHHHHHHHHhhh
Q 013596 411 LYLILPFKLLSRHGGLWLLVNCLHKL 436 (439)
Q Consensus 411 ~L~~~~~~l~~epagA~a~Aal~~~~ 436 (439)
+|+. +++++++|++++++++++...
T Consensus 262 ~l~~-~eGi~~~pss~~a~a~~~~~~ 286 (304)
T cd01562 262 LLFE-REKLVAEPAGALALAALLSGK 286 (304)
T ss_pred HHHH-HcCceEchhHHHHHHHHHhCc
Confidence 8864 459999999999999988753
No 40
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=3.5e-45 Score=377.79 Aligned_cols=292 Identities=37% Similarity=0.518 Sum_probs=223.8
Q ss_pred cCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHHHHHHHHHHHc
Q 013596 120 VGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARF 199 (439)
Q Consensus 120 ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~ 199 (439)
+|++|||+++++|++.++ .+++||+|+|++|||||||+|++.+++..+++.|.+++|+++|+||||+|+|++|+.+
T Consensus 65 ~g~pTPL~r~~~L~~~lg----~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~~~~vtetssGN~G~alA~aaa~~ 140 (419)
T TIGR01415 65 IGRPTPLIRAKGLEELLG----TPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGAKRLVTETGAGQWGSALSLAGALF 140 (419)
T ss_pred cCCCCCeEEccchhhhhC----CCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCCCeEEEecCchHHHHHHHHHHHHc
Confidence 567999999999998872 2379999999999999999999999999999999887777789999999999999999
Q ss_pred CCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHH------------------HHHHHHHHHHHccCCceEEe
Q 013596 200 GLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKD------------------ATSEAIRDWVTNVETTHYIL 261 (439)
Q Consensus 200 Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~d------------------a~~~a~~~~~~~~~~~~y~~ 261 (439)
|++|+||||+.+...++.|+.+|+.|||+|+.++.. +++ ++.++.+...+ ..+..|++
T Consensus 141 Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~---~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~-~~~~~y~~ 216 (419)
T TIGR01415 141 GLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSE---FTEFGREVLKEDPDHPGSLGIAISEAIEYALS-DEDTKYSL 216 (419)
T ss_pred CCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCc---hhhHHHHhhhcccccccchHHHHHHHHHHHHh-CCCCEEEe
Confidence 999999999864332456889999999999999753 222 34455554332 23467887
Q ss_pred cccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-----cCCCcEEEEEecCCCCCC
Q 013596 262 GSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-----NDKDVRLIGVEAAGFGLD 336 (439)
Q Consensus 262 ~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-----~~p~vrvigVep~~s~~~ 336 (439)
++..| | +..+|+++|+|+.+|+. ..+..||+||+|+|+|||++|++.+|+ ..+++|||+|||++++
T Consensus 217 ~~~~n-~-----~~~h~~~ig~Ei~~Ql~-~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~-- 287 (419)
T TIGR01415 217 GSVLN-H-----VLLHQTVIGLEAKKQME-EAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACP-- 287 (419)
T ss_pred CCCCc-H-----HHHHHHHHHHHHHHHHH-hcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCCh--
Confidence 77644 2 23688899999999873 334469999999999999999998873 2468999999999973
Q ss_pred chhhhhhhhcCCeeeecc----chhhhccccCC-CccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHHHHHH
Q 013596 337 SGKHAATLSKGEVGVLHG----ALSYLLQNEDG-QIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKL 411 (439)
Q Consensus 337 ~~~~~~sl~~G~~~~~~g----~~~~~~~~~~g-~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~A~~~ 411 (439)
++..|.+....+ .........-| ...++.++++||+++++++....+.+...++++.|+|+|+++|+++
T Consensus 288 ------~l~~g~~~yd~~~~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~~~~~~~~~l~~~~~~~~~~V~d~e~~~a~r~ 361 (419)
T TIGR01415 288 ------TLTRGEYRYDFGDTAGLTPLLKMYTLGHDFIPPPIHAGGLRYHGVAPTLSLLVNLGIVEARAYDQEEAFEAAVI 361 (419)
T ss_pred ------hhhcCcccccccccccCCcceeeeecCCCCCCcceeccccccCCccHHHHHHhhcCceEEEEECHHHHHHHHHH
Confidence 344443211000 00000000011 1345678999999998888766666666678999999999999998
Q ss_pred HHHcCCceEEchhHHHHHHHHHhh
Q 013596 412 YLILPFKLLSRHGGLWLLVNCLHK 435 (439)
Q Consensus 412 L~~~~~~l~~epagA~a~Aal~~~ 435 (439)
|+.. +|++++|+++.++|+++..
T Consensus 362 la~~-eGi~~epssa~alaaai~~ 384 (419)
T TIGR01415 362 FAKT-EGIVPAPESAHAIAAAIDE 384 (419)
T ss_pred HHHh-cCCccccHHHHHHHHHHHH
Confidence 8654 4999999999999999874
No 41
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=4.4e-45 Score=376.11 Aligned_cols=295 Identities=20% Similarity=0.184 Sum_probs=229.2
Q ss_pred ccHHHHHHHHHHhhCCchhHHHHHHHH--hhhcCCCCcccchhhhhhHhcCCCCCC-CeEEEEeCCCC-CCCchhhhHHH
Q 013596 90 YALSELESALHKLADDRDFQEELSGIL--RDYVGRETPLYFAERLTEHYRRPNGGG-PHIYLKREDLN-HTGAHKINNAV 165 (439)
Q Consensus 90 ~~l~~l~~a~~~~~~~~~f~~~~~~~i--~~~ig~~TPL~~~~~l~~~l~~~~~~g-~~IylK~E~~n-pTGSfK~Rga~ 165 (439)
.++++++++... + .+.+ .+|||+++++|++.+ | .+||+|+|++| ||||||+||+.
T Consensus 24 ~~~~~~~~a~~~--------------~~~~~~~-~~TPL~~~~~l~~~~------G~~~v~~K~E~~q~ptgSFK~RG~~ 82 (399)
T PRK08206 24 LSQEEAKKARAF--------------HQSFPGY-APTPLVALPDLAAEL------GVGSILVKDESYRFGLNAFKALGGA 82 (399)
T ss_pred CCHHHHHHHHHH--------------HhcCCCC-CCCCCcchHHHHHHh------CCCcEEEecccCcCCCCChHHhhHH
Confidence 346788888764 6 4466 489999999999987 5 69999999985 99999999999
Q ss_pred HHHHHHH--HhCCC--------------------eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHH
Q 013596 166 GQALLAK--RLGKT--------------------RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMR 223 (439)
Q Consensus 166 ~~~~~a~--~~g~~--------------------~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~ 223 (439)
+.+..+. +.+.+ .+|+++|+||||+|+|++|+.+|++|+||||+.. ++.|+..|+
T Consensus 83 ~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~---~~~k~~~i~ 159 (399)
T PRK08206 83 YAVARLLAEKLGLDISELSFEELTSGEVREKLGDITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGS---SEERVDAIR 159 (399)
T ss_pred HHHHHHHHHHhCCCcccCCHHHhhhhHHHHhccCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHH
Confidence 8887664 22321 2588999999999999999999999999999975 466888999
Q ss_pred HcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCc---chhhhhhhHHhHHHHHHHHHHHhCCCCCEE
Q 013596 224 LLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPY---PMMVRDFHAVIGKETRRQALEKWGGKPDVL 300 (439)
Q Consensus 224 ~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~---~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~v 300 (439)
.|||+|+.++. +++++...+.+. .++ ..+|++.... .+|| +..++.||.++|+|+.+|+.+ .+..||+|
T Consensus 160 ~~GA~Vi~v~~---~~~~~~~~a~~~-~~~--~g~~~v~~~~-~~~~~~~~~~~~~G~~t~a~EI~eQl~~-~~~~pD~v 231 (399)
T PRK08206 160 ALGAECIITDG---NYDDSVRLAAQE-AQE--NGWVVVQDTA-WEGYEEIPTWIMQGYGTMADEAVEQLKE-MGVPPTHV 231 (399)
T ss_pred HcCCEEEEeCC---CHHHHHHHHHHH-HHH--cCCEEecCcc-ccCcccccHHHHHHhHHHHHHHHHHHHh-cCCCCCEE
Confidence 99999999974 578887776653 322 2345543210 1122 134568999999999888732 22359999
Q ss_pred EEcCCchHHHHHHHHHHh-c--CCCcEEEEEecCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCccccccc
Q 013596 301 IACVGGGSNAMGLFHEFV-N--DKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGL 377 (439)
Q Consensus 301 vvpvG~GG~~aGi~~~~~-~--~p~vrvigVep~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL 377 (439)
|+|+|+||+++|++.+++ . .+.+|||+|||+++ ..++.++..|++..+++ .++|+++|+
T Consensus 232 vvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~gs----~~l~~s~~~g~~~~~~~--------------~~~tia~gl 293 (399)
T PRK08206 232 FLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQA----DCLYQSAVDGKPVAVTG--------------DMDTIMAGL 293 (399)
T ss_pred EEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCCC----chHHHHHHcCCcEEeCC--------------CCCceeccC
Confidence 999999999999999997 3 35899999999998 56778888887764321 246899999
Q ss_pred CCCCCCCchhhhhhcCCcEEEEeCHHHHHHHHHHHHH---cCCceEEchhHHHHHHHHHh
Q 013596 378 DYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLI---LPFKLLSRHGGLWLLVNCLH 434 (439)
Q Consensus 378 ~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~---~~~~l~~epagA~a~Aal~~ 434 (439)
.++.++.....+.+...|+++.|+|+|+++++++|+. ++.++++||++|+++|+++.
T Consensus 294 ~~~~~~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~gi~vepsgAa~lAa~~~ 353 (399)
T PRK08206 294 ACGEPNPLAWEILRNCADAFISCPDEVAALGMRILANPLGGDPPIVSGESGAVGLGALAA 353 (399)
T ss_pred CCCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHhcccCCCCCeeecchHHHHHHHHHH
Confidence 8665554322233446799999999999999999964 35699999999999999985
No 42
>PLN02565 cysteine synthase
Probab=100.00 E-value=3.1e-45 Score=367.53 Aligned_cols=268 Identities=23% Similarity=0.270 Sum_probs=208.0
Q ss_pred HhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCC---C-eeEEecCcchHHHH
Q 013596 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---T-RIIAETGAGQHGVA 191 (439)
Q Consensus 116 i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~---~-~~Vv~aSsGNhG~A 191 (439)
+..++| +|||++++.++..+ +.+||+|+|++|||||||||+|++++..+.+.|. . ..|+++|+||||+|
T Consensus 9 ~~~~ig-~TPLv~l~~l~~~~------~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~a 81 (322)
T PLN02565 9 VTELIG-KTPLVYLNNVVDGC------VARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIG 81 (322)
T ss_pred HHHHhC-CCceEEccccCCCC------CceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHH
Confidence 556676 69999988776432 5799999999999999999999999998887663 1 35889999999999
Q ss_pred HHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcc
Q 013596 192 TATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYP 271 (439)
Q Consensus 192 lA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~ 271 (439)
+|++|+.+|++|+||||+.. ++.|+++|+.|||+|+.++.. .+++++.+.+.+ +.++ .+..|+++|++|+.+.
T Consensus 82 lA~~a~~~G~~~~ivvp~~~---~~~k~~~i~~~GA~V~~~~~~-~~~~~~~~~a~~-l~~~-~~~~~~~~q~~n~~n~- 154 (322)
T PLN02565 82 LAFMAAAKGYKLIITMPASM---SLERRIILLAFGAELVLTDPA-KGMKGAVQKAEE-ILAK-TPNSYILQQFENPANP- 154 (322)
T ss_pred HHHHHHHcCCeEEEEeCCCC---cHHHHHHHHHcCCEEEEeCCC-CCcHHHHHHHHH-HHHh-CCCcEeecccCCHhHH-
Confidence 99999999999999999976 578999999999999998752 345667765544 3332 2346787777655322
Q ss_pred hhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEEEecCCCCCCchhhhhhhhcCCee
Q 013596 272 MMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVG 350 (439)
Q Consensus 272 ~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVep~~s~~~~~~~~~sl~~G~~~ 350 (439)
..+|.++|+|+.+| +++.||+||+|+|+||+++|++.+++ .+|++|||+|||+++. .+..|+++
T Consensus 155 ---~~~~~t~a~Ei~~q----~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~--------~~~~g~~~ 219 (322)
T PLN02565 155 ---KIHYETTGPEIWKG----TGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESA--------VLSGGKPG 219 (322)
T ss_pred ---HHHHHHHHHHHHHh----cCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCc--------cccCCCCC
Confidence 14677888887654 45569999999999999999999998 7899999999999973 23344432
Q ss_pred eeccchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHHH
Q 013596 351 VLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLV 430 (439)
Q Consensus 351 ~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~A 430 (439)
++ ..+||+...+... +....+|+++.|+|+|+++++++|+. +++++++|++++++|
T Consensus 220 -------------------~~-~~~glg~~~~~~~---~~~~~vd~~v~V~d~ea~~a~~~l~~-~~gi~vg~ssga~la 275 (322)
T PLN02565 220 -------------------PH-KIQGIGAGFIPGV---LDVDLLDEVVQVSSDEAIETAKLLAL-KEGLLVGISSGAAAA 275 (322)
T ss_pred -------------------Cc-cCCCCCCCCCCCc---CCHhHCCEEEEECHHHHHHHHHHHHH-HhCcEEeccHHHHHH
Confidence 22 2356654222211 12235689999999999999999854 459999999999999
Q ss_pred HHHhhh
Q 013596 431 NCLHKL 436 (439)
Q Consensus 431 al~~~~ 436 (439)
+++...
T Consensus 276 aa~~~a 281 (322)
T PLN02565 276 AAIKIA 281 (322)
T ss_pred HHHHHH
Confidence 998764
No 43
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=1e-44 Score=365.30 Aligned_cols=276 Identities=23% Similarity=0.241 Sum_probs=210.7
Q ss_pred HhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCC---CeeEEecCcchHHHHH
Q 013596 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---TRIIAETGAGQHGVAT 192 (439)
Q Consensus 116 i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~---~~~Vv~aSsGNhG~Al 192 (439)
+..++| +|||+++++|++.+ +.+||+|+|++|||||||+|++.+++..+.+.|. ..+|+++|+||||+|+
T Consensus 7 ~~~~~g-~TPL~~~~~l~~~~------g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g~~vv~aSsGN~g~al 79 (330)
T PRK10717 7 VSDTIG-NTPLIRLNRASEAT------GCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPGGTIVEGTAGNTGIGL 79 (330)
T ss_pred HHHHhC-CCceEEccccCCCC------CCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHH
Confidence 556676 79999999998876 7899999999999999999999999999988764 2468899999999999
Q ss_pred HHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCC-CC---CHHHHHHHHHHHHHHccCCceEEecccCCCC
Q 013596 193 ATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG-TA---TLKDATSEAIRDWVTNVETTHYILGSVAGPH 268 (439)
Q Consensus 193 A~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~-~~---~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~ 268 (439)
|++|+++|++|+||||+.. ++.|+++|+.+||+|+.++.. .. .+.+...+..++...+..+.+|+++++.|+.
T Consensus 80 A~~a~~~G~~~~vv~p~~~---~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~ 156 (330)
T PRK10717 80 ALVAAARGYKTVIVMPETQ---SQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPA 156 (330)
T ss_pred HHHHHHcCCcEEEEeCCCC---CHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChh
Confidence 9999999999999999976 466899999999999999752 11 1222212222222222224567766654432
Q ss_pred CcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEEEecCCCCCCchhhhhhhhcC
Q 013596 269 PYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKG 347 (439)
Q Consensus 269 p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVep~~s~~~~~~~~~sl~~G 347 (439)
. +..+|.++|.|+.+|+ +..+|+||+|+|+||+++|++.+++ ..|++|||+|||+++. +..++..|
T Consensus 157 ~----~~~g~~t~a~Ei~~ql----~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~-----~~~~~~~g 223 (330)
T PRK10717 157 N----REAHYETTGPEIWEQT----DGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSA-----LYSYYKTG 223 (330)
T ss_pred h----HHHHHHhHHHHHHHhc----CCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCc-----cccccccC
Confidence 1 2356778888876654 5468999999999999999999998 5799999999999973 23344444
Q ss_pred CeeeeccchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHH
Q 013596 348 EVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLW 427 (439)
Q Consensus 348 ~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~ 427 (439)
+.. ....++++||+.+.+.. .+....++++++|+|+|+++++++|+ +.+++++||++|+
T Consensus 224 ~~~-----------------~~~~~~~~gl~~~~~~~---~~~~~~~d~~v~V~d~e~~~a~~~l~-~~~gi~vepssga 282 (330)
T PRK10717 224 ELK-----------------AEGSSITEGIGQGRITA---NLEGAPIDDAIRIPDEEALSTAYRLL-EEEGLCLGGSSGI 282 (330)
T ss_pred CcC-----------------CCCCcccCcCCCCcCCc---ccChhhCCEEEEECHHHHHHHHHHHH-HhcCCeEeecHHH
Confidence 321 13567888887543322 23333568999999999999999885 4459999999999
Q ss_pred HHHHHHhh
Q 013596 428 LLVNCLHK 435 (439)
Q Consensus 428 a~Aal~~~ 435 (439)
++|++++.
T Consensus 283 ~laa~~~l 290 (330)
T PRK10717 283 NVAAALRL 290 (330)
T ss_pred HHHHHHHH
Confidence 99999875
No 44
>PLN03013 cysteine synthase
Probab=100.00 E-value=1.7e-44 Score=370.51 Aligned_cols=268 Identities=20% Similarity=0.244 Sum_probs=211.4
Q ss_pred HHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCC---C-eeEEecCcchHHH
Q 013596 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---T-RIIAETGAGQHGV 190 (439)
Q Consensus 115 ~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~---~-~~Vv~aSsGNhG~ 190 (439)
.+.+++| .|||++++.+++.. +.+||+|+|++|||||||||+|.+++..+++.|. + ..|+++|+||||+
T Consensus 116 ~i~~~iG-~TPLv~l~~l~~~~------g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ 188 (429)
T PLN03013 116 NVSQLIG-KTPMVYLNSIAKGC------VANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGI 188 (429)
T ss_pred HHHhcCC-CCCeEECccccccc------CCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHH
Confidence 4677787 69999999988754 6899999999999999999999999999988764 2 4589999999999
Q ss_pred HHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCc
Q 013596 191 ATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPY 270 (439)
Q Consensus 191 AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~ 270 (439)
|+|++|+.+|++|+||||+.. ++.|+++|+.|||+|+.++.. ..++++.+.+.+. .++ ...+|+++|+.|+.+
T Consensus 189 ALA~~a~~~G~~~~VvvP~~~---s~~K~~~ira~GAeVi~v~~~-~~~~~a~~~A~el-a~~-~~g~~~~~qy~Np~n- 261 (429)
T PLN03013 189 GLAFIAASRGYRLILTMPASM---SMERRVLLKAFGAELVLTDPA-KGMTGAVQKAEEI-LKN-TPDAYMLQQFDNPAN- 261 (429)
T ss_pred HHHHHHHHcCCCEEEEECCCC---cHHHHHHHHHcCCEEEEECCC-CChHHHHHHHHHH-Hhh-cCCeEeCCCCCCHHH-
Confidence 999999999999999999976 577999999999999999753 3456666665542 332 234677777755432
Q ss_pred chhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEEEecCCCCCCchhhhhhhhcCCe
Q 013596 271 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEV 349 (439)
Q Consensus 271 ~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVep~~s~~~~~~~~~sl~~G~~ 349 (439)
+..+|.++|.|+.+| +++.+|+||+|+|+||+++|++.+++ .+|++|||||||+++. .+..|++
T Consensus 262 ---~~ah~~ttg~EI~eq----~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~--------~l~~g~~ 326 (429)
T PLN03013 262 ---PKIHYETTGPEIWDD----TKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESD--------ILSGGKP 326 (429)
T ss_pred ---HHHHHHHHHHHHHHh----cCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCc--------hhhCCCC
Confidence 224677777777555 45579999999999999999999998 6899999999999973 2334433
Q ss_pred eeeccchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHH
Q 013596 350 GVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLL 429 (439)
Q Consensus 350 ~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~ 429 (439)
+ ++ ..+||+.+.+.. .+....+|+++.|+|+|+++++++|+. ++|++++|++++++
T Consensus 327 ~-------------------~~-~i~Glg~~~ip~---~~~~~~vD~vv~VsD~ea~~a~r~La~-~eGi~vG~SSGAal 382 (429)
T PLN03013 327 G-------------------PH-KIQGIGAGFIPK---NLDQKIMDEVIAISSEEAIETAKQLAL-KEGLMVGISSGAAA 382 (429)
T ss_pred C-------------------Cc-ccCcccCCcCCH---hHHHHhccEEEEECHHHHHHHHHHHHH-HcCCEEecCHHHHH
Confidence 2 22 235666433222 234456799999999999999999964 45999999999999
Q ss_pred HHHHhh
Q 013596 430 VNCLHK 435 (439)
Q Consensus 430 Aal~~~ 435 (439)
++++..
T Consensus 383 aAalkl 388 (429)
T PLN03013 383 AAAIKV 388 (429)
T ss_pred HHHHHH
Confidence 998874
No 45
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=7.7e-44 Score=363.77 Aligned_cols=286 Identities=20% Similarity=0.202 Sum_probs=223.5
Q ss_pred HHHHHhhhcCCCCcccchhhhhhHhcCCCCCC-CeEEEEeCCCCC-CCchhhhHHHHHHHHHHHhC--------------
Q 013596 112 LSGILRDYVGRETPLYFAERLTEHYRRPNGGG-PHIYLKREDLNH-TGAHKINNAVGQALLAKRLG-------------- 175 (439)
Q Consensus 112 ~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g-~~IylK~E~~np-TGSfK~Rga~~~~~~a~~~g-------------- 175 (439)
++.+|.+| ++|||++++.|++.+ | .+||+|+|++|+ |||||+||+.+.+..+.+..
T Consensus 13 ~~~~~~~~--~~TPL~~~~~l~~~~------g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~ 84 (376)
T TIGR01747 13 FHKKIPGY--RPTPLCALDHLANLL------GLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLK 84 (376)
T ss_pred HHHhCCCC--CCCCCcchHHHHHHh------CCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHh
Confidence 34468787 479999999999988 6 699999999985 89999999999887653310
Q ss_pred --------CCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHH
Q 013596 176 --------KTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAI 247 (439)
Q Consensus 176 --------~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~ 247 (439)
..+.|+++|+||||+|+|++|+.+|++|+||||+.. ++.|+.+|+.|||+|+.++. +++++.+.+.
T Consensus 85 ~~~~~~~~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~---~~~k~~~i~~~GAeVi~v~~---~~~~a~~~a~ 158 (376)
T TIGR01747 85 NDAIGEKMGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGS---AQERVENILNLGAECTITDM---NYDDTVRLAM 158 (376)
T ss_pred hhHHHhhcCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHhCCCEEEEECC---CHHHHHHHHH
Confidence 135788999999999999999999999999999976 56799999999999999974 5788776665
Q ss_pred HHHHHccCCceEEec-----ccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-c-C
Q 013596 248 RDWVTNVETTHYILG-----SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-N-D 320 (439)
Q Consensus 248 ~~~~~~~~~~~y~~~-----s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~-~ 320 (439)
+. .++ ..+|+++ .+++.+|+ ++.||.+++.|+.+|+...-...||+||+|+|+||+++|++.+++ . .
T Consensus 159 ~~-~~~--~g~~~~~~~~~~~~~~~~~~---ii~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~ 232 (376)
T TIGR01747 159 QM-AQQ--HGWVVVQDTAWEGYEKIPTW---IMQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYS 232 (376)
T ss_pred HH-HHh--cCcEEeccccccccccCCch---HHHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcC
Confidence 43 322 2345554 24444454 468999999999888632101269999999999999999999886 2 3
Q ss_pred C-CcEEEEEecCCCCCCchhhhhhhhc--CCeeeeccchhhhccccCCCccCCcccccccCCCCCCCc-hhhhhhcCCcE
Q 013596 321 K-DVRLIGVEAAGFGLDSGKHAATLSK--GEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPE-HSFLKDEGRAE 396 (439)
Q Consensus 321 p-~vrvigVep~~s~~~~~~~~~sl~~--G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~-~~~l~~~~~~~ 396 (439)
+ .++||+|||+++ +.+++++.. |++..++ ..++||++||.++.+++. +..+++ ..+.
T Consensus 233 ~~~p~vi~Vep~ga----~~~~~s~~~~~g~~~~~~--------------~~~~Tiadgl~~~~~~~~~~~~~~~-~~~~ 293 (376)
T TIGR01747 233 ENNPHSIVVEPDKA----DCLYQSAVKKDGDIVNVG--------------GDMATIMAGLACGEPNPISWEILRN-CTSQ 293 (376)
T ss_pred CCCCEEEEEeeCCC----CHHHHHHHhcCCCeEEcC--------------CCccccccccccCCcchHHHHHHHh-cCCE
Confidence 4 479999999998 678889876 7665321 125799999998767665 444544 5799
Q ss_pred EEEeCHHHHHHHHHHHHHc---CCceEEchhHHHHHHHHHhhh
Q 013596 397 YYNVTDDEALEGMKLYLIL---PFKLLSRHGGLWLLVNCLHKL 436 (439)
Q Consensus 397 ~v~VsD~ea~~A~~~L~~~---~~~l~~epagA~a~Aal~~~~ 436 (439)
+++|+|+|+.+|+++|+.. +.++++||+||+++|++...+
T Consensus 294 ~v~V~D~ei~~A~~~L~~~~g~~~~i~~epaga~~la~l~~~~ 336 (376)
T TIGR01747 294 FISAQDSVAAKGMRVLGAPYGGDPRIISGESGAVGLGLLAAVM 336 (376)
T ss_pred EEEcCHHHHHHHHHHHhcccCCCCeEeeeCchHHHHHHHHHHH
Confidence 9999999999999988532 337999999999999888543
No 46
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=2.8e-44 Score=357.39 Aligned_cols=265 Identities=24% Similarity=0.280 Sum_probs=205.2
Q ss_pred hhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCC---CeeEEecCcchHHHHHHH
Q 013596 118 DYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---TRIIAETGAGQHGVATAT 194 (439)
Q Consensus 118 ~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~---~~~Vv~aSsGNhG~AlA~ 194 (439)
+++| +|||+++++|++.+ +.+||+|+|++|||||||+|++.+++..+.+.|. .++|+++|+||||+|+|+
T Consensus 3 ~~vg-~TPL~~~~~l~~~~------g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~ 75 (299)
T TIGR01136 3 ELIG-NTPLVRLNRLAPGC------DARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGDTIIEATSGNTGIALAM 75 (299)
T ss_pred cccC-CCceEEccccCCCC------CceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHH
Confidence 4676 69999999999865 6899999999999999999999999999888765 245889999999999999
Q ss_pred HHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhh
Q 013596 195 VCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMV 274 (439)
Q Consensus 195 aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v 274 (439)
+|+.+|++|+||||+.. +..|+++|+.+||+|+.++.. .+++++.+.+.+ +.++ .+.+|++++++|+.+ +
T Consensus 76 ~a~~~G~~~~i~vp~~~---~~~k~~~~~~~GA~v~~~~~~-~~~~~~~~~a~~-~~~~-~~~~~~~~~~~~~~~----~ 145 (299)
T TIGR01136 76 VAAAKGYKLILTMPETM---SLERRKLLRAYGAELILTPAE-EGMKGAIDKAEE-LAAE-TNKYVMLDQFENPAN----P 145 (299)
T ss_pred HHHHcCCcEEEEECCCC---CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHH-HHhh-CCCeEecCCCCCchh----H
Confidence 99999999999999975 456899999999999999753 357777776654 3332 245677666654332 1
Q ss_pred hhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEEEecCCCCCCchhhhhhhhcCCeeeec
Q 013596 275 RDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLH 353 (439)
Q Consensus 275 ~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVep~~s~~~~~~~~~sl~~G~~~~~~ 353 (439)
..+|.++|.|+.+|+ +..||+||+|+|+||+++|++.+|+ .+|.+|||+|||+++.. +..++++
T Consensus 146 ~~g~~t~~~Ei~~ql----~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~--------~~~~~~~--- 210 (299)
T TIGR01136 146 EAHYKTTGPEIWRDT----DGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPV--------LSGGEPG--- 210 (299)
T ss_pred HHHHHHHHHHHHHhc----CCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCcc--------ccCCCCC---
Confidence 257788888887665 4469999999999999999999998 68999999999999732 2222221
Q ss_pred cchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHHHHHH
Q 013596 354 GALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVNCL 433 (439)
Q Consensus 354 g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~Aal~ 433 (439)
.+++ .+++...+. ..+....+++++.|+|+|+++++++|+ +++++++||++|+++|+++
T Consensus 211 ----------------~~~~-~~i~~~~~~---~~~~~~~~d~~~~V~d~e~~~a~~~l~-~~~gi~~e~ssaa~~a~~~ 269 (299)
T TIGR01136 211 ----------------PHKI-QGIGAGFIP---KILDLSLIDEVITVSDEDAIETARRLA-REEGILVGISSGAAVAAAL 269 (299)
T ss_pred ----------------CccC-CCCCCCCCC---ccCChhhCCEEEEECHHHHHHHHHHHH-HHhCceEcchHHHHHHHHH
Confidence 1111 122211111 123334568999999999999999885 4559999999999999998
Q ss_pred hh
Q 013596 434 HK 435 (439)
Q Consensus 434 ~~ 435 (439)
+.
T Consensus 270 ~~ 271 (299)
T TIGR01136 270 KL 271 (299)
T ss_pred HH
Confidence 64
No 47
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=2.7e-44 Score=356.99 Aligned_cols=260 Identities=20% Similarity=0.231 Sum_probs=201.9
Q ss_pred HHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCC---CeeEEecCcchHHHH
Q 013596 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---TRIIAETGAGQHGVA 191 (439)
Q Consensus 115 ~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~---~~~Vv~aSsGNhG~A 191 (439)
.|.+.+| +|||+++++|+... +.+||+|+|++|||||||+|++.+++..+.+.|. ...|+++|+||||+|
T Consensus 5 ~i~~~~g-~TPl~~~~~l~~~~------g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~a 77 (296)
T PRK11761 5 TLEDTIG-NTPLVKLQRLPPDR------GNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGDTLIEATSGNTGIA 77 (296)
T ss_pred cHHHhcC-CCceEeccccccCC------CCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHH
Confidence 4667786 79999999988765 7899999999999999999999999999988774 245889999999999
Q ss_pred HHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcc
Q 013596 192 TATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYP 271 (439)
Q Consensus 192 lA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~ 271 (439)
+|++|+.+|++|+||||+.. ++.|+++|+.|||+|+.++.. .+++++.+.+.+ +.++ ...|++++++|+.+
T Consensus 78 lA~~a~~~G~~~~i~~p~~~---~~~k~~~~~~~GA~v~~~~~~-~~~~~~~~~a~~-l~~~--~~~~~~~~~~n~~~-- 148 (296)
T PRK11761 78 LAMIAAIKGYRMKLIMPENM---SQERRAAMRAYGAELILVPKE-QGMEGARDLALQ-MQAE--GEGKVLDQFANPDN-- 148 (296)
T ss_pred HHHHHHHcCCCEEEEECCCC---CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHH-HHhc--cCCEecCCCCChhh--
Confidence 99999999999999999975 467999999999999999853 357777655543 2222 34566666654432
Q ss_pred hhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEEEecCCCCCCchhhhhhhhcCCee
Q 013596 272 MMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVG 350 (439)
Q Consensus 272 ~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVep~~s~~~~~~~~~sl~~G~~~ 350 (439)
+..++.++|.|+.+|+ +..+|+||+|+|+||+++|++.+++ .+|.+|||||||+++. ++ .|
T Consensus 149 --~~~~~~t~~~Ei~eq~----~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~--------~i-~g--- 210 (296)
T PRK11761 149 --PLAHYETTGPEIWRQT----EGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGS--------SI-PG--- 210 (296)
T ss_pred --HHHHhhchHHHHHHhc----CCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCC--------cC-cC---
Confidence 2234578888876654 4468999999999999999999998 6899999999999862 11 11
Q ss_pred eeccchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHHH
Q 013596 351 VLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLV 430 (439)
Q Consensus 351 ~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~A 430 (439)
+..........++....+|+++.|+|+|+++++++|+.. .++++||+++++++
T Consensus 211 --------------------------~~~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~-~gi~ve~ssga~la 263 (296)
T PRK11761 211 --------------------------IRRWPEEYLPKIFDASRVDRVLDVSQQEAENTMRRLARE-EGIFCGVSSGGAVA 263 (296)
T ss_pred --------------------------CCCCCCCcCCcccChhhCCEEEEECHHHHHHHHHHHHHH-hCceEchhHHHHHH
Confidence 100000000112333456899999999999999998644 49999999999999
Q ss_pred HHHhh
Q 013596 431 NCLHK 435 (439)
Q Consensus 431 al~~~ 435 (439)
+++..
T Consensus 264 aa~~~ 268 (296)
T PRK11761 264 AALRI 268 (296)
T ss_pred HHHHH
Confidence 98874
No 48
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=5.7e-44 Score=369.30 Aligned_cols=294 Identities=37% Similarity=0.486 Sum_probs=224.3
Q ss_pred CCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHHHHHHHHHHHcC
Q 013596 121 GRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFG 200 (439)
Q Consensus 121 g~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~G 200 (439)
+++|||+++++|++.++ .+.+||+|+|++|||||||+|++..++..+++.|.+++++++|+||||+|+|++|+.+|
T Consensus 75 ~~~TPL~~~~~L~~~lg----~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~~~~vtetgsGN~G~alA~aaa~~G 150 (427)
T PRK12391 75 WRPTPLIRARRLEKALG----TPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGIKRLTTETGAGQWGSALALACALFG 150 (427)
T ss_pred cCCCCeeEchhhHhhhC----CCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCCCEEEEccCchHHHHHHHHHHHHcC
Confidence 47999999999998872 23799999999999999999999999999999998877777889999999999999999
Q ss_pred CeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCC---------------CCHHHHHHHHHHHHHHccCCceEEecccC
Q 013596 201 LQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGT---------------ATLKDATSEAIRDWVTNVETTHYILGSVA 265 (439)
Q Consensus 201 i~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~---------------~~~~da~~~a~~~~~~~~~~~~y~~~s~~ 265 (439)
++|+||||+.+...++.|+.+|+.|||+|+.++... +.+..++.++.+...+ .++..|++++..
T Consensus 151 l~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~-~~~~~y~~~s~~ 229 (427)
T PRK12391 151 LECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAK-RPDTKYALGSVL 229 (427)
T ss_pred CcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHh-CCCcEEEcCCCC
Confidence 999999998543334568889999999999997521 1122356666665433 245577765432
Q ss_pred CCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh----cC-CCcEEEEEecCCCCCCchhh
Q 013596 266 GPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV----ND-KDVRLIGVEAAGFGLDSGKH 340 (439)
Q Consensus 266 ~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~----~~-p~vrvigVep~~s~~~~~~~ 340 (439)
+ + +..+|.++|+|+.+|+ +..+..||+||+|+|+|||++|++.+|+ .. +++|||+|||++++
T Consensus 230 ~--~----~~~~~~~ig~Ei~~Ql-~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~------ 296 (427)
T PRK12391 230 N--H----VLLHQTVIGLEAKKQL-ELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACP------ 296 (427)
T ss_pred c--H----HHhhHHHHHHHHHHHH-HhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccch------
Confidence 1 1 3368889999999997 3445579999999999999999999773 24 89999999999973
Q ss_pred hhhhhcCCeeeeccch----h-hhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHHHHHHHHHc
Q 013596 341 AATLSKGEVGVLHGAL----S-YLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLIL 415 (439)
Q Consensus 341 ~~sl~~G~~~~~~g~~----~-~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~ 415 (439)
++..|.+....|.. . ..+........++.+.++||++.+..+....+.+...++++.|+|+|+++|+++|+..
T Consensus 297 --~l~~g~~~~~~gd~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~g~~~~~~~l~~~~~~~~~~V~d~e~~~a~~~~a~~ 374 (427)
T PRK12391 297 --TLTKGEYAYDFGDTAGLTPLLKMYTLGHDFVPPPIHAGGLRYHGMAPLVSLLVHEGLIEARAYPQTEVFEAAVLFART 374 (427)
T ss_pred --hhccccccccccccccCCccceeEecCCCCCCccccccccccCCchHHHHHHHhcCceEEEEECHHHHHHHHHHHHHH
Confidence 34444332111100 0 0000111113456788999999888776666777777799999999999999988654
Q ss_pred CCceEEchhHHHHHHHHHhh
Q 013596 416 PFKLLSRHGGLWLLVNCLHK 435 (439)
Q Consensus 416 ~~~l~~epagA~a~Aal~~~ 435 (439)
+|++++|+++.++|+++..
T Consensus 375 -eGi~~~pss~~alaaa~~~ 393 (427)
T PRK12391 375 -EGIVPAPESSHAIAAAIDE 393 (427)
T ss_pred -cCCeechHHHHHHHHHHHH
Confidence 4999999999999998864
No 49
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=1e-43 Score=368.42 Aligned_cols=273 Identities=24% Similarity=0.291 Sum_probs=217.9
Q ss_pred cCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHHHHHHHHHHHc
Q 013596 120 VGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARF 199 (439)
Q Consensus 120 ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~ 199 (439)
.| .|||+++++|++.+ +..+||+|+|++|||||||||++.+.+..+.+.|.+ .|+++|+||||+|+|++|+++
T Consensus 87 eG-~TPLv~~~~l~~~l-----G~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~~-~vv~aSsGN~g~alA~~aa~~ 159 (421)
T PRK07591 87 PG-FTPLVKADRLAREL-----GLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGFT-TVACASTGNLANSVAAHAARA 159 (421)
T ss_pred CC-CCcceEhHHHHHHh-----CCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCCC-EEEEeCCCHHHHHHHHHHHHc
Confidence 45 59999999999987 236999999999999999999999999999988876 567899999999999999999
Q ss_pred CCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhhhH
Q 013596 200 GLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHA 279 (439)
Q Consensus 200 Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~ 279 (439)
|++|+||||+.. ++.|+.+|+.|||+|+.++. +++++.+.+.+ ..++ ...+|++++ +.+||. .+||.
T Consensus 160 Gl~~~I~vP~~~---~~~k~~~~~~~GA~Vi~v~g---~~d~a~~~a~~-~~~~-~~~~~~~n~--~~~p~~---ieG~~ 226 (421)
T PRK07591 160 GLDSCVFIPADL---EAGKIVGTLVYGPTLVAVDG---NYDDVNRLCSE-LANE-HEGWGFVNI--NLRPYY---AEGSK 226 (421)
T ss_pred CCCEEEEEcCCC---CHHHHHHHHHcCCEEEEECC---CHHHHHHHHHH-HHHh-cCCEEEecC--CCCccc---ccchH
Confidence 999999999975 46799999999999999974 47777665544 3332 214566554 346664 37999
Q ss_pred HhHHHHHHHHHHHhCC-CCCEEEEcCCchHHHHHHHHHHhc--------CCCcEEEEEecCCCCCCchhhhhhhhcCCee
Q 013596 280 VIGKETRRQALEKWGG-KPDVLIACVGGGSNAMGLFHEFVN--------DKDVRLIGVEAAGFGLDSGKHAATLSKGEVG 350 (439)
Q Consensus 280 ~ig~E~~~Qi~e~~g~-~~d~vvvpvG~GG~~aGi~~~~~~--------~p~vrvigVep~~s~~~~~~~~~sl~~G~~~ 350 (439)
++++|+.+|+ +. .||+||+|+|+||+++|++.+|+. ++.+|||+|||+++ ..+.++++.|...
T Consensus 227 Tia~Ei~eQl----~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~----~~~~~~~~~g~~~ 298 (421)
T PRK07591 227 TLGYEVAEQL----GWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGC----SPIAQAFKEGRDV 298 (421)
T ss_pred HHHHHHHHHc----CCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCC----CHHHHHHHcCCCc
Confidence 9999987775 43 489999999999999999999973 58899999999997 4577778777643
Q ss_pred eeccchhhhccccCCCccCCcccccccCCCCCCC--c-hhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHH
Q 013596 351 VLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGP--E-HSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLW 427 (439)
Q Consensus 351 ~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~--~-~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~ 427 (439)
.. ...++|+++||..+.+.. . +..+++ ..+.++.|+|+|+++|+++|+. .+|+++||++|+
T Consensus 299 ~~--------------~~~~~tia~~l~~~~p~~~~~~~~~i~~-~~g~~v~Vsd~ei~~a~~~la~-~eGi~~epssaa 362 (421)
T PRK07591 299 VK--------------PVKPNTIAKSLAIGNPADGPYALDIARR-TGGAIEDVTDEEIIEGIKLLAR-TEGIFTETAGGV 362 (421)
T ss_pred cc--------------CCCCCchhhheecCCCCCcHHHHHHHHH-hCCEEEEECHHHHHHHHHHHHh-cCCeeecchHHH
Confidence 21 123579999986433222 2 223333 5689999999999999998854 449999999999
Q ss_pred HHHHHHhhh
Q 013596 428 LLVNCLHKL 436 (439)
Q Consensus 428 a~Aal~~~~ 436 (439)
++|+++...
T Consensus 363 alAal~~l~ 371 (421)
T PRK07591 363 TVAVLKKLV 371 (421)
T ss_pred HHHHHHHHH
Confidence 999998754
No 50
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=7.3e-44 Score=354.21 Aligned_cols=266 Identities=23% Similarity=0.271 Sum_probs=204.5
Q ss_pred hhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCC---CeeEEecCcchHHHHHHH
Q 013596 118 DYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---TRIIAETGAGQHGVATAT 194 (439)
Q Consensus 118 ~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~---~~~Vv~aSsGNhG~AlA~ 194 (439)
+++| +|||+++++ ...+ +.+||+|+|++|||||||||++.+++..+.+.|. +.+|+++|+||||+|+|+
T Consensus 3 ~~~g-~TPl~~~~~-~~~~------g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~aSsGN~g~alA~ 74 (298)
T TIGR01139 3 ELIG-NTPLVRLNR-IEGC------NANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGKTIVEPTSGNTGIALAM 74 (298)
T ss_pred cccC-CCceEEccc-cCCC------CceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChhHHHHHH
Confidence 4676 699999998 4444 7899999999999999999999999999988775 245899999999999999
Q ss_pred HHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhh
Q 013596 195 VCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMV 274 (439)
Q Consensus 195 aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v 274 (439)
+|+++|++|+||||+.. ++.|+++|+.+||+|+.++.. .++.++.+.+.+ +.++....+|+++++.|+.+ +
T Consensus 75 ~a~~~Gl~~~i~vp~~~---~~~k~~~~~~~GA~v~~~~~~-~~~~~~~~~a~~-~~~~~~~~~~~~~~~~n~~~----~ 145 (298)
T TIGR01139 75 VAAARGYKLILTMPETM---SIERRKLLKAYGAELVLTPGA-EGMKGAIAKAEE-IAASTPNSYFMLQQFENPAN----P 145 (298)
T ss_pred HHHHcCCeEEEEeCCcc---CHHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHH-HHHhCCCcEEcccccCCccc----H
Confidence 99999999999999975 456889999999999999853 235566665544 34432233567777765442 1
Q ss_pred hhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEEEecCCCCCCchhhhhhhhcCCeeeec
Q 013596 275 RDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLH 353 (439)
Q Consensus 275 ~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVep~~s~~~~~~~~~sl~~G~~~~~~ 353 (439)
..+|.++|.|+.+|+ +..||+||+|+|+||+++|++.+|+ ..|++|||+|||++++ .+..++++
T Consensus 146 ~~g~~t~~~Ei~~q~----~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~--------~~~~~~~~--- 210 (298)
T TIGR01139 146 EIHRKTTGPEIWRDT----DGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESP--------VLSGGKPG--- 210 (298)
T ss_pred HHHHHHHHHHHHHHh----CCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCc--------ccCCCCCC---
Confidence 257778888887665 4469999999999999999999998 6789999999999873 22222211
Q ss_pred cchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHHHHHH
Q 013596 354 GALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVNCL 433 (439)
Q Consensus 354 g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~Aal~ 433 (439)
.+..+||+...+.. .+....+|+++.|+|+|+++++++|+. ++++++||++++++|+++
T Consensus 211 -----------------~~~~~gl~~~~~~~---~~~~~~~d~~~~V~d~e~~~a~~~l~~-~~gi~~~pssga~laa~~ 269 (298)
T TIGR01139 211 -----------------PHKIQGIGAGFIPK---NLNRSVIDEVITVSDEEAIETARRLAA-EEGILVGISSGAAVAAAL 269 (298)
T ss_pred -----------------CCCCCCCCCCCCCC---ccChhhCCEEEEECHHHHHHHHHHHHH-hcCceEcccHHHHHHHHH
Confidence 12234554222221 223335689999999999999998865 459999999999999998
Q ss_pred hhh
Q 013596 434 HKL 436 (439)
Q Consensus 434 ~~~ 436 (439)
...
T Consensus 270 ~~~ 272 (298)
T TIGR01139 270 KLA 272 (298)
T ss_pred HHH
Confidence 653
No 51
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=2.2e-43 Score=362.66 Aligned_cols=280 Identities=19% Similarity=0.174 Sum_probs=215.5
Q ss_pred HHhhhcCCCCcccchhhhhhHhcCCCCCC-CeEEEEeCCCCC-CCchhhhHHHHHHHHHH--HhC---------------
Q 013596 115 ILRDYVGRETPLYFAERLTEHYRRPNGGG-PHIYLKREDLNH-TGAHKINNAVGQALLAK--RLG--------------- 175 (439)
Q Consensus 115 ~i~~~ig~~TPL~~~~~l~~~l~~~~~~g-~~IylK~E~~np-TGSfK~Rga~~~~~~a~--~~g--------------- 175 (439)
++..+ ++|||++++.|++.+ | .+||+|+|++|+ |||||+||+.+.+..+. +.|
T Consensus 35 ~~~~~--~~TPL~~~~~L~~~~------g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~ 106 (396)
T TIGR03528 35 SFPGY--QPTPLAELDNLAKHL------GVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNE 106 (396)
T ss_pred cCCCC--cCCCCcchHHHHHHh------CCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHH
Confidence 45554 589999999999988 6 799999999995 99999999999987642 222
Q ss_pred -----CCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 013596 176 -----KTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (439)
Q Consensus 176 -----~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (439)
...+|+++|+||||+|+|++|+.+|++|+||||+.. ++.|++.|+.|||+|+.++. +++++.+.+.+.
T Consensus 107 ~~~~~~~~~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~---~~~K~~~ir~~GAeVi~~~~---~~~~a~~~a~~~- 179 (396)
T TIGR03528 107 IREKLGDITFVTATDGNHGRGVAWAANQLGQKSVVYMPKGS---AQIRLENIRAEGAECTITDL---NYDDAVRLAWKM- 179 (396)
T ss_pred HHhhccCcEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCC---cHHHHHHHHhcCCEEEEECC---CHHHHHHHHHHH-
Confidence 122789999999999999999999999999999976 46799999999999999974 577877766553
Q ss_pred HHccCCceEEec-----ccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh--cCCC-
Q 013596 251 VTNVETTHYILG-----SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV--NDKD- 322 (439)
Q Consensus 251 ~~~~~~~~y~~~-----s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~--~~p~- 322 (439)
.++ ..+|+++ ++++.+| .++.||.++|+|+.+|+...-...||+||+|+|+||+++|++.+++ ..+.
T Consensus 180 a~~--~g~~~v~~~~~~~~~~~~~---~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~ 254 (396)
T TIGR03528 180 AQE--NGWVMVQDTAWEGYEKIPT---WIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEER 254 (396)
T ss_pred HHh--cCcEeeccccccccccCch---HHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCC
Confidence 322 2345553 3433333 3457999999999988732111269999999999999999988874 2343
Q ss_pred cEEEEEecCCCCCCchhhhhhhhc--CCeeeeccchhhhccccCCCccCCcccccccCCCCCCCch-hhhhhcCCcEEEE
Q 013596 323 VRLIGVEAAGFGLDSGKHAATLSK--GEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEH-SFLKDEGRAEYYN 399 (439)
Q Consensus 323 vrvigVep~~s~~~~~~~~~sl~~--G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~-~~l~~~~~~~~v~ 399 (439)
+|||+|||+++ +.+..++.. |++...++ .++|+++||.++.++... ..++ ...|++++
T Consensus 255 p~vi~Vep~~a----~~l~~s~~~~~g~~~~~~g--------------~~~Tiadgl~~~~p~~~~~~~~~-~~~d~~v~ 315 (396)
T TIGR03528 255 PITVIVEPDAA----DCLYRSAIADDGKPHFVTG--------------DMATIMAGLACGEPNTIGWEILR-DYASQFIS 315 (396)
T ss_pred CEEEEEccCCC----chHHHHHHhcCCCEEEeCC--------------CccceecccccCCccHHHHHHHH-HhCCeEEE
Confidence 59999999998 568888876 66654210 357999999866555432 3344 46799999
Q ss_pred eCHHHHHHHHHHHHHc---CCceEEchhHHHHHHHHH
Q 013596 400 VTDDEALEGMKLYLIL---PFKLLSRHGGLWLLVNCL 433 (439)
Q Consensus 400 VsD~ea~~A~~~L~~~---~~~l~~epagA~a~Aal~ 433 (439)
|+|+|+++|+++|+.. +.++++||+||+++|++.
T Consensus 316 VsD~ei~~a~r~La~~~~~~~~~~~epsga~~~Aala 352 (396)
T TIGR03528 316 CPDWVAAKGMRILGNPLKGDPRVISGESGAVGTGLLA 352 (396)
T ss_pred ECHHHHHHHHHHHhcccCCCCceeecCcHHHHHHHHH
Confidence 9999999999988541 568999999999996553
No 52
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-43 Score=346.17 Aligned_cols=268 Identities=28% Similarity=0.311 Sum_probs=214.2
Q ss_pred HhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhC---CCeeEEecCcchHHHHH
Q 013596 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLG---KTRIIAETGAGQHGVAT 192 (439)
Q Consensus 116 i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g---~~~~Vv~aSsGNhG~Al 192 (439)
+.+.+| .|||++++++.... +++||+|+|++||+||.|||-+++++..|++.| +..+|||+||||+|++|
T Consensus 5 ~~~~iG-~TPlvrL~~~~~~~------~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~tIVE~TSGNTGI~L 77 (300)
T COG0031 5 ILDLIG-NTPLVRLNRLSPGT------GVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGGTIVEATSGNTGIAL 77 (300)
T ss_pred hHHHhC-CCCcEeecccCCCC------CceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCCCEEEEcCCChHHHHH
Confidence 445567 59999999998743 689999999999999999999999999998876 46689999999999999
Q ss_pred HHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcch
Q 013596 193 ATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPM 272 (439)
Q Consensus 193 A~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~ 272 (439)
|++|+.+|+++++|||+.. ++.|+++|+.|||+|+.++...+.+..+.+.+.+. +++..+..++++|+.|+.++
T Consensus 78 A~vaa~~Gy~~iivmP~~~---S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el-~~~~p~~~~~~~Qf~NpaN~-- 151 (300)
T COG0031 78 AMVAAAKGYRLIIVMPETM---SQERRKLLRALGAEVILTPGAPGNMKGAIERAKEL-AAEIPGYAVWLNQFENPANP-- 151 (300)
T ss_pred HHHHHHcCCcEEEEeCCCC---CHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHH-HHhCCCceEchhhcCCCccH--
Confidence 9999999999999999964 45678889999999999987434477777766543 44444457888999998887
Q ss_pred hhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEEEecCCCCCCchhhhhhhhcCCeee
Q 013596 273 MVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGV 351 (439)
Q Consensus 273 ~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVep~~s~~~~~~~~~sl~~G~~~~ 351 (439)
..|+ .-+..||++|.++.+|+||+++|+||+++|++.++| .+|++|+|+|||++|.+ +..|. +
T Consensus 152 ---~aH~---~tT~~EI~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~--------~~~G~-g- 215 (300)
T COG0031 152 ---EAHY---ETTGPEIWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVL--------LSGGE-G- 215 (300)
T ss_pred ---HHHH---hhhHHHHHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcc--------cCCCC-C-
Confidence 3554 333445566677779999999999999999999998 79999999999999853 22232 1
Q ss_pred eccchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHHHH
Q 013596 352 LHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVN 431 (439)
Q Consensus 352 ~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~Aa 431 (439)
+|-| .|++.+.+. ..+....+|+++.|+|+|+++++|+|+.++ ++++.+|++++++|
T Consensus 216 ------------------~~~i-~GIG~~~ip---~~~~~~~iD~v~~V~d~~A~~~~r~La~~e-GilvG~SsGA~~~a 272 (300)
T COG0031 216 ------------------PHKI-EGIGAGFVP---ENLDLDLIDEVIRVSDEEAIATARRLAREE-GLLVGISSGAALAA 272 (300)
T ss_pred ------------------Cccc-CCCCCCcCC---cccccccCceEEEECHHHHHHHHHHHHHHh-CeeecccHHHHHHH
Confidence 2222 345432222 234555679999999999999999997665 99999999999998
Q ss_pred HHhh
Q 013596 432 CLHK 435 (439)
Q Consensus 432 l~~~ 435 (439)
++.-
T Consensus 273 a~~~ 276 (300)
T COG0031 273 ALKL 276 (300)
T ss_pred HHHH
Confidence 8764
No 53
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=1.7e-43 Score=350.34 Aligned_cols=261 Identities=25% Similarity=0.257 Sum_probs=206.2
Q ss_pred CCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCC---CeeEEecCcchHHHHHHHHHHHc
Q 013596 123 ETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---TRIIAETGAGQHGVATATVCARF 199 (439)
Q Consensus 123 ~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~---~~~Vv~aSsGNhG~AlA~aa~~~ 199 (439)
+|||+++++|++.+ +.+||+|+|++|||||||+|++.+.+..+.+.++ +.+|+++|+||||+|+|++|+++
T Consensus 2 ~TPl~~~~~l~~~~------g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~~vv~~SsGN~g~alA~~a~~~ 75 (291)
T cd01561 2 NTPLVRLNRLSPGT------GAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGTTIIEPTSGNTGIGLAMVAAAK 75 (291)
T ss_pred CCCEEEccccCCCC------CCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHc
Confidence 69999999998765 7899999999999999999999999999988776 25688999999999999999999
Q ss_pred CCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCC-CCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhhh
Q 013596 200 GLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGT-ATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFH 278 (439)
Q Consensus 200 Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~-~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~ 278 (439)
|++|+||||+.. ++.|+++|+.+||+|+.++... .+++++.+.+.+ +.++ .+.+|+++++.| |+ ...+|
T Consensus 76 G~~~~i~vp~~~---~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~-~~~~-~~~~~~~~~~~~--p~---~~~g~ 145 (291)
T cd01561 76 GYRFIIVMPETM---SEEKRKLLRALGAEVILTPEAEADGMKGAIAKARE-LAAE-TPNAFWLNQFEN--PA---NPEAH 145 (291)
T ss_pred CCeEEEEECCCC---CHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHH-HHhh-CCCcEEecCCCC--ch---HHHHH
Confidence 999999999975 4678999999999999998642 134677665544 3332 235677655532 22 22566
Q ss_pred H-HhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEEEecCCCCCCchhhhhhhhcCCeeeeccch
Q 013596 279 A-VIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGAL 356 (439)
Q Consensus 279 ~-~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVep~~s~~~~~~~~~sl~~G~~~~~~g~~ 356 (439)
+ +++.|+.+|+ +..||+||+|+|+||+++|++.+|+ ..|.++||+|||+++.. +..+
T Consensus 146 ~~t~~~Ei~~ql----~~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~--------~~~~--------- 204 (291)
T cd01561 146 YETTAPEIWEQL----DGKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVL--------FSGG--------- 204 (291)
T ss_pred HHHHHHHHHHHc----CCCCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCcc--------cCCC---------
Confidence 6 8888887765 4369999999999999999999998 67999999999999732 1111
Q ss_pred hhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHHHHHHhh
Q 013596 357 SYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVNCLHK 435 (439)
Q Consensus 357 ~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~Aal~~~ 435 (439)
....++++||+.+.+. ..+.+..+++++.|+|+|+++++++|+. +.++++||++|+++|+++..
T Consensus 205 -----------~~~~~~~~gi~~~~~~---~~~~~~~~~~~~~V~d~e~~~a~~~l~~-~~gi~~epssa~a~a~~~~~ 268 (291)
T cd01561 205 -----------PPGPHKIEGIGAGFIP---ENLDRSLIDEVVRVSDEEAFAMARRLAR-EEGLLVGGSSGAAVAAALKL 268 (291)
T ss_pred -----------CCCCCcCCCCCCCCCC---CccCchhCceeEEECHHHHHHHHHHHHH-HhCeeEcccHHHHHHHHHHH
Confidence 1135566777644221 1234446789999999999999998854 45999999999999999864
No 54
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=3.6e-43 Score=348.02 Aligned_cols=259 Identities=19% Similarity=0.250 Sum_probs=200.6
Q ss_pred HhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCC---CeeEEecCcchHHHHH
Q 013596 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---TRIIAETGAGQHGVAT 192 (439)
Q Consensus 116 i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~---~~~Vv~aSsGNhG~Al 192 (439)
|.+++| +|||+++++++... +.+||+|+|++|||||||+|++.+++..+.+.|. ++.|+++|+||||+|+
T Consensus 2 i~~~ig-~TPl~~~~~l~~~~------g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~~vv~aSsGN~g~al 74 (290)
T TIGR01138 2 IEQTVG-NTPLVRLQRMGPEN------GSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGDVLIEATSGNTGIAL 74 (290)
T ss_pred hHHhCC-CCceEEccccccCC------CCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCCCEEEEECCChHHHHH
Confidence 355676 79999999998765 7899999999999999999999999999988775 2568899999999999
Q ss_pred HHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcch
Q 013596 193 ATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPM 272 (439)
Q Consensus 193 A~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~ 272 (439)
|++|+.+|++|+||||+.. ++.|+++|+.|||+|+.++.. .+++++.+.+.+ +.++ .+. ++++|++|+.+.
T Consensus 75 A~~a~~~G~~~~i~~p~~~---~~~k~~~~~~~GA~v~~v~~~-~~~~~~~~~a~~-l~~~-~~~-~~~~~~~~~~~~-- 145 (290)
T TIGR01138 75 AMIAALKGYRMKLLMPDNM---SQERKAAMRAYGAELILVTKE-EGMEGARDLALE-LANR-GEG-KLLDQFNNPDNP-- 145 (290)
T ss_pred HHHHHHcCCeEEEEECCCC---CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHH-HHHh-CCC-CCCCccCCcccH--
Confidence 9999999999999999975 466889999999999999753 346666554443 3332 222 455666654432
Q ss_pred hhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEEEecCCCCCCchhhhhhhhcCCeee
Q 013596 273 MVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGV 351 (439)
Q Consensus 273 ~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVep~~s~~~~~~~~~sl~~G~~~~ 351 (439)
..++.++|.|+.+| ++..+|+||+|+|+||+++|++.+++ .+|++|||+|||+++.. + .|
T Consensus 146 --~~~~~t~~~Ei~~q----~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~--------~-~g---- 206 (290)
T TIGR01138 146 --YAHYTSTGPEIWQQ----TGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSS--------I-PG---- 206 (290)
T ss_pred --HHHhHhHHHHHHHH----cCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCC--------c-cC----
Confidence 12356788877655 45568999999999999999999998 68999999999998631 1 11
Q ss_pred eccchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHHHH
Q 013596 352 LHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVN 431 (439)
Q Consensus 352 ~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~Aa 431 (439)
..++.+++. +. .+....+|+++.|+|+|+++++++|+. +++++++|++++++|+
T Consensus 207 ------------------~~~~~~~~~-----~~--~~~~~~~d~~v~V~d~e~~~a~~~l~~-~~gi~~g~ssga~laa 260 (290)
T TIGR01138 207 ------------------IRRWPTEYL-----PG--IFDASLVDRVLDIHQRDAENTMRELAV-REGIFCGVSSGGAVAA 260 (290)
T ss_pred ------------------CCCCCCCcC-----Cc--ccChhhCcEEEEECHHHHHHHHHHHHH-HhCceEcHhHHHHHHH
Confidence 111222221 11 112334689999999999999999854 4599999999999999
Q ss_pred HHhh
Q 013596 432 CLHK 435 (439)
Q Consensus 432 l~~~ 435 (439)
++..
T Consensus 261 ~~~~ 264 (290)
T TIGR01138 261 ALRL 264 (290)
T ss_pred HHHH
Confidence 9864
No 55
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=3.2e-43 Score=362.30 Aligned_cols=271 Identities=24% Similarity=0.317 Sum_probs=216.5
Q ss_pred CCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHHHHHHHHHHHcCCe
Q 013596 123 ETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQ 202 (439)
Q Consensus 123 ~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~ 202 (439)
.|||+++++|++.+ +..+||+|+|++|||||||||++.+++..+.+.|.+ .|+++|+||||+|+|++|+.+|++
T Consensus 79 ~TPL~~~~~l~~~~-----G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~~-~vv~aSsGN~g~alA~~aa~~G~~ 152 (394)
T PRK08197 79 MTPLLPLPRLGKAL-----GIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGVK-HLAMPTNGNAGAAWAAYAARAGIR 152 (394)
T ss_pred CCCceEhHHHHHHh-----CCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCCC-EEEEeCCcHHHHHHHHHHHHcCCc
Confidence 69999999999887 136999999999999999999999999999988875 577899999999999999999999
Q ss_pred EEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhhhHHhH
Q 013596 203 CIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIG 282 (439)
Q Consensus 203 ~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig 282 (439)
|+||||++. ++.|+++|+.|||+|+.++. +++++.+.+.+. .++ ..+|+++++. ||+. .++|.+++
T Consensus 153 ~~v~vp~~~---~~~k~~~~~~~GA~Vi~v~~---~~~~~~~~a~~~-~~~--~g~~~~~~~~--np~~---ieG~~t~a 218 (394)
T PRK08197 153 ATIFMPADA---PEITRLECALAGAELYLVDG---LISDAGKIVAEA-VAE--YGWFDVSTLK--EPYR---IEGKKTMG 218 (394)
T ss_pred EEEEEcCCC---CHHHHHHHHHcCCEEEEECC---CHHHHHHHHHHH-HHh--cCcccccCCC--Cccc---hhcHHHHH
Confidence 999999976 46789999999999999974 467776655443 322 3467766654 4443 37889999
Q ss_pred HHHHHHHHHHhCC-CCCEEEEcCCchHHHHHHHHHHhc--------CCCcEEEEEecCCCCCCchhhhhhhhcCCeeeec
Q 013596 283 KETRRQALEKWGG-KPDVLIACVGGGSNAMGLFHEFVN--------DKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLH 353 (439)
Q Consensus 283 ~E~~~Qi~e~~g~-~~d~vvvpvG~GG~~aGi~~~~~~--------~p~vrvigVep~~s~~~~~~~~~sl~~G~~~~~~ 353 (439)
+|+.+|+ +. .||+||+|+|+||+++|++.+|+. ++.+|||+||++++ ..+..+++.|.....
T Consensus 219 ~Ei~eQl----~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~----~~l~~~~~~g~~~~~- 289 (394)
T PRK08197 219 LELAEQL----GWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGC----APIVKAWEEGKEESE- 289 (394)
T ss_pred HHHHHHc----CCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCC----CHHHHHHHcCCCccc-
Confidence 9987776 42 489999999999999999999973 38899999999998 457777777654321
Q ss_pred cchhhhccccCCCccCCcccccccCCCCCCCc---hhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHHH
Q 013596 354 GALSYLLQNEDGQIIEPHSISAGLDYPGVGPE---HSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLV 430 (439)
Q Consensus 354 g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~---~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~A 430 (439)
....++|+++|+.++..... +..+++ ..+.++.|+|+|+++|+++|+. ++|+++||++|+++|
T Consensus 290 ------------~~~~~~tia~gl~~~~~~~~~~~~~~~~~-~~g~~v~V~d~e~~~a~~~la~-~eGi~vepssaaala 355 (394)
T PRK08197 290 ------------FWEDAHTVAFGIRVPKALGDFLVLDAVRE-TGGCAIAVSDDAILAAQRELAR-EEGLFACPEGAATFA 355 (394)
T ss_pred ------------cCCCCCceehhhhCCCCCCHHHHHHHHHH-hCCEEEEeCHHHHHHHHHHHHh-cCCceECchHHHHHH
Confidence 02246789999875443222 122333 4689999999999999998854 459999999999999
Q ss_pred HHHhhh
Q 013596 431 NCLHKL 436 (439)
Q Consensus 431 al~~~~ 436 (439)
+++...
T Consensus 356 ~~~~l~ 361 (394)
T PRK08197 356 AARQLR 361 (394)
T ss_pred HHHHHH
Confidence 998753
No 56
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=5.3e-43 Score=351.22 Aligned_cols=278 Identities=24% Similarity=0.292 Sum_probs=213.8
Q ss_pred HhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHHHHHHHH
Q 013596 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATV 195 (439)
Q Consensus 116 i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~a 195 (439)
-.+.+| .|||+++++|++.+ +..+||+|+|++|||||||+|++.+++..+++.|.+ .|+++|+||||+|+|++
T Consensus 9 ~~~~~g-~TPL~~~~~l~~~~-----G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~-~lv~aSsGN~g~alA~~ 81 (319)
T PRK06381 9 EEKPPG-GTPLLRARKLEEEL-----GLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGYS-GITVGTCGNYGASIAYF 81 (319)
T ss_pred ccccCC-CCceeEhHhhHHhc-----CCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCCC-EEEEeCCcHHHHHHHHH
Confidence 345677 59999999999887 237999999999999999999999999999998875 57789999999999999
Q ss_pred HHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhh
Q 013596 196 CARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVR 275 (439)
Q Consensus 196 a~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~ 275 (439)
|+.+|++|+||||... +..|+++|+.|||+|+.++. +++++.+.+.+. .++ +.+|+++++.. || ...+
T Consensus 82 aa~~G~~~~ivvp~~~---~~~~~~~l~~~GA~V~~~~~---~~~~~~~~a~~~-~~~--~~~~~~~~~~~-n~--~~~~ 149 (319)
T PRK06381 82 ARLYGLKAVIFIPRSY---SNSRVKEMEKYGAEIIYVDG---KYEEAVERSRKF-AKE--NGIYDANPGSV-NS--VVDI 149 (319)
T ss_pred HHHcCCcEEEEECCCC---CHHHHHHHHHcCCEEEEcCC---CHHHHHHHHHHH-HHH--cCcEecCCCCC-Cc--chHh
Confidence 9999999999999975 45788899999999999974 477777766554 322 34666544421 22 1234
Q ss_pred hhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-c------CCCcEEEEEecCCCCCCchhhhhhhhcCC
Q 013596 276 DFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-N------DKDVRLIGVEAAGFGLDSGKHAATLSKGE 348 (439)
Q Consensus 276 ~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~------~p~vrvigVep~~s~~~~~~~~~sl~~G~ 348 (439)
.+|.++|+|+.+|+ +..||+||+|+|+||+++|++.+|+ . +|.+|||+||+.++ +.+..++..|.
T Consensus 150 ~G~~t~a~Ei~~ql----~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~----~~~~~~~~~g~ 221 (319)
T PRK06381 150 EAYSAIAYEIYEAL----GDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGG----NQIVESFKRGS 221 (319)
T ss_pred hhHHHHHHHHHHHh----CCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCC----CHHHHHHHcCC
Confidence 78999999988776 4469999999999999999999998 3 69999999999987 45677888776
Q ss_pred eeeeccchhhhccccCCCccCCccccc-ccCCCCC-----CCc--hhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceE
Q 013596 349 VGVLHGALSYLLQNEDGQIIEPHSISA-GLDYPGV-----GPE--HSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLL 420 (439)
Q Consensus 349 ~~~~~g~~~~~~~~~~g~~~~~~tia~-GL~~~~v-----g~~--~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~ 420 (439)
..... .+..++++ .++.+.+ ... +..+.+ +.++++.|+|+|+++++++|+ ++++++
T Consensus 222 ~~~~~--------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~v~d~e~~~a~~~la-~~egi~ 285 (319)
T PRK06381 222 SEVVD--------------LEVDEIRETAVNEPLVSYRSFDGDNALEAIYD-SHGYAFGFSDDEMVKYAELLR-RMEGLN 285 (319)
T ss_pred CcccC--------------CCcchhhhcccCCCcccccCCCHHHHHHHHHH-cCCEEEEECHHHHHHHHHHHH-HhCCcc
Confidence 54211 01123332 1221111 111 122333 457999999999999999885 555999
Q ss_pred EchhHHHHHHHHHhhh
Q 013596 421 SRHGGLWLLVNCLHKL 436 (439)
Q Consensus 421 ~epagA~a~Aal~~~~ 436 (439)
+||++++++|+++...
T Consensus 286 ~epssa~alaa~~~~~ 301 (319)
T PRK06381 286 ALPASASALAALVKYL 301 (319)
T ss_pred cCchHHHHHHHHHHHH
Confidence 9999999999988754
No 57
>PLN00011 cysteine synthase
Probab=100.00 E-value=5e-43 Score=352.01 Aligned_cols=266 Identities=24% Similarity=0.248 Sum_probs=206.3
Q ss_pred hhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCC----CeeEEecCcchHHHHH
Q 013596 117 RDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK----TRIIAETGAGQHGVAT 192 (439)
Q Consensus 117 ~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~----~~~Vv~aSsGNhG~Al 192 (439)
.+++| +|||+++++++..+ +.+||+|+|++|||||||||++.+++..+.+.|. ..+|+++|+||||+|+
T Consensus 12 ~~~~g-~TPl~~l~~l~~~~------g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~al 84 (323)
T PLN00011 12 TELIG-NTPMVYLNNIVDGC------VARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGL 84 (323)
T ss_pred HHHhC-CCceEEccccCCCC------CceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHH
Confidence 44566 79999999887643 5799999999999999999999999999988773 2467899999999999
Q ss_pred HHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcch
Q 013596 193 ATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPM 272 (439)
Q Consensus 193 A~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~ 272 (439)
|++|+.+|++|+||||+.. ++.|+++|+.+||+|+.++.. ...++..+.+.+ +.++ ...+|++++++|+.+.
T Consensus 85 A~~a~~~G~~~~ivvp~~~---~~~k~~~i~~~GA~V~~~~~~-~~~~~~~~~a~~-l~~~-~~~~~~~~~~~n~~n~-- 156 (323)
T PLN00011 85 ACIGAARGYKVILVMPSTM---SLERRIILRALGAEVHLTDQS-IGLKGMLEKAEE-ILSK-TPGGYIPQQFENPANP-- 156 (323)
T ss_pred HHHHHHcCCeEEEEeCCCC---CHHHHHHHHHcCCEEEEECCC-cChHHHHHHHHH-HHHh-CCCeEEeccccCCccH--
Confidence 9999999999999999975 467999999999999999753 234444554433 3332 2346777888765432
Q ss_pred hhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEEEecCCCCCCchhhhhhhhcCCeee
Q 013596 273 MVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGV 351 (439)
Q Consensus 273 ~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVep~~s~~~~~~~~~sl~~G~~~~ 351 (439)
..+|.++|.|+.+|+ ++.||+||+|+|+||+++|++.+++ .+|++|||||||+++. .+..|++
T Consensus 157 --~~~~~t~~~EI~~q~----~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~--------~~~~~~~-- 220 (323)
T PLN00011 157 --EIHYRTTGPEIWRDS----AGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESA--------VLSGGQP-- 220 (323)
T ss_pred --HHHHHHHHHHHHHhc----CCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCc--------ccCCCCC--
Confidence 135778888876654 4469999999999999999999998 6899999999999973 2333332
Q ss_pred eccchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHHHH
Q 013596 352 LHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVN 431 (439)
Q Consensus 352 ~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~Aa 431 (439)
..++++||+.+.+.. .+....+|+++.|+|+|+++++++|+ ++.+++++|++++++++
T Consensus 221 ------------------~~~~~~gl~~~~~~~---~~~~~~~d~~v~V~d~e~~~a~~~l~-~~~Gi~~~~ssga~laa 278 (323)
T PLN00011 221 ------------------GPHLIQGIGSGIIPF---NLDLTIVDEIIQVTGEEAIETAKLLA-LKEGLLVGISSGAAAAA 278 (323)
T ss_pred ------------------CCCCCCCCCCCCCCc---ccChhhCCeEEEECHHHHHHHHHHHH-HhcCCeEcccHHHHHHH
Confidence 124566776432221 12233468999999999999999885 44599999999999999
Q ss_pred HHhh
Q 013596 432 CLHK 435 (439)
Q Consensus 432 l~~~ 435 (439)
++..
T Consensus 279 a~~~ 282 (323)
T PLN00011 279 ALKV 282 (323)
T ss_pred HHHH
Confidence 8764
No 58
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=4.8e-43 Score=352.14 Aligned_cols=273 Identities=25% Similarity=0.331 Sum_probs=215.6
Q ss_pred hcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHHHHHHHHHHH
Q 013596 119 YVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCAR 198 (439)
Q Consensus 119 ~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~ 198 (439)
.+| +|||+++++|++++ ++.+||+|+|++|||||||||++.+++..+.+.+.+ .|+++|+||||.|+|++|+.
T Consensus 19 ~~g-~TPl~~~~~l~~~~-----g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~-~vv~~SsGN~g~alA~~a~~ 91 (324)
T cd01563 19 GEG-NTPLVRAPRLGERL-----GGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGVK-AVACASTGNTSASLAAYAAR 91 (324)
T ss_pred CCC-CCceeechhhHhhc-----CCCceEEEecCCCCcccHHHhhHHHHHHHHHHcCCC-EEEEeCCCHHHHHHHHHHHH
Confidence 455 79999999999876 248999999999999999999999999999988854 67889999999999999999
Q ss_pred cCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhhh
Q 013596 199 FGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFH 278 (439)
Q Consensus 199 ~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~ 278 (439)
+|++|+||||+.. ++.|+++|+.+||+|+.++. +++++.+.+.+ +.++ + .|+++++.|+.. ..+|
T Consensus 92 ~G~~~~ivvp~~~---~~~k~~~l~~~GA~Vi~~~~---~~~~~~~~a~~-~~~~--~-~~~~~~~~n~~~-----~~g~ 156 (324)
T cd01563 92 AGIKCVVFLPAGK---ALGKLAQALAYGATVLAVEG---NFDDALRLVRE-LAEE--N-WIYLSNSLNPYR-----LEGQ 156 (324)
T ss_pred cCCceEEEEeCCC---CHHHHHHHHHcCCEEEEECC---cHHHHHHHHHH-HHHh--c-CeeccCCCCcce-----ecch
Confidence 9999999999976 46789999999999999974 57777765544 3332 2 455556544433 2688
Q ss_pred HHhHHHHHHHHHHHhC-CCCCEEEEcCCchHHHHHHHHHHhc-------CCCcEEEEEecCCCCCCchhhhhhhhcCCee
Q 013596 279 AVIGKETRRQALEKWG-GKPDVLIACVGGGSNAMGLFHEFVN-------DKDVRLIGVEAAGFGLDSGKHAATLSKGEVG 350 (439)
Q Consensus 279 ~~ig~E~~~Qi~e~~g-~~~d~vvvpvG~GG~~aGi~~~~~~-------~p~vrvigVep~~s~~~~~~~~~sl~~G~~~ 350 (439)
.+++.|+.+|+ + ..+|+||+|+|+||+++|++.+++. +|.+|||||||.++ +.+..++..|++.
T Consensus 157 ~t~~~Ei~~q~----~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~----~~~~~~~~~g~~~ 228 (324)
T cd01563 157 KTIAFEIAEQL----GWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGA----APIVRAFKEGKDD 228 (324)
T ss_pred hhhHHHHHHHc----CCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCC----CHHHHHHHcCCCc
Confidence 88999987775 3 2589999999999999999999872 26899999999997 4566777777542
Q ss_pred eeccchhhhccccCCCccCCcccccccCCCCCCC--chhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHH
Q 013596 351 VLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGP--EHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWL 428 (439)
Q Consensus 351 ~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~--~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a 428 (439)
.. .....+|+++||+++.+.. ....+.+...++++.|+|+|+++++++|+ +++++++||++|++
T Consensus 229 ~~-------------~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~-~~~gi~~~pssa~a 294 (324)
T cd01563 229 IE-------------PVENPETIATAIRIGNPASGPKALRAVRESGGTAVAVSDEEILEAQKLLA-RTEGIFVEPASAAS 294 (324)
T ss_pred cC-------------cCCCCCceeeeeecCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHH-hcCCceeCchHHHH
Confidence 10 1234678999987543221 11122233568999999999999999885 55699999999999
Q ss_pred HHHHHhh
Q 013596 429 LVNCLHK 435 (439)
Q Consensus 429 ~Aal~~~ 435 (439)
+|+++..
T Consensus 295 laa~~~l 301 (324)
T cd01563 295 LAGLKKL 301 (324)
T ss_pred HHHHHHH
Confidence 9998864
No 59
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=5.4e-43 Score=356.64 Aligned_cols=268 Identities=21% Similarity=0.271 Sum_probs=203.7
Q ss_pred HHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCC----CeeEEecCcchHHH
Q 013596 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK----TRIIAETGAGQHGV 190 (439)
Q Consensus 115 ~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~----~~~Vv~aSsGNhG~ 190 (439)
.+...+| +|||+++++++..+ +.+||+|+|++|||||||||++.+++..+.+.|. ..+|+++|+||||+
T Consensus 52 ~v~~~ig-~TPl~~l~~l~~~~------g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~ 124 (368)
T PLN02556 52 DASQLIG-KTPLVYLNKVTEGC------GAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGI 124 (368)
T ss_pred hHHHhcC-CCccEEcccccccc------CCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHH
Confidence 3556676 69999999988754 7899999999999999999999999999988763 24688999999999
Q ss_pred HHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCc
Q 013596 191 ATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPY 270 (439)
Q Consensus 191 AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~ 270 (439)
|+|++|+.+|++|+||||+.. +..|+++|+.|||+|+.++.. ..+...++++.+. +++ ....|+++|++|+.+.
T Consensus 125 alA~~a~~~G~~~~ivvp~~~---~~~k~~~lr~~GA~Vi~~~~~-~~~~~~~~~a~~l-~~~-~~~~~~~~q~~np~~~ 198 (368)
T PLN02556 125 SLAFMAAMKGYKMILTMPSYT---SLERRVTMRAFGAELVLTDPT-KGMGGTVKKAYEL-LES-TPDAFMLQQFSNPANT 198 (368)
T ss_pred HHHHHHHHcCCCEEEEECCCC---CHHHHHHHHHcCCEEEEECCC-CCccHHHHHHHHH-HHh-cCCCCccCCCCCHHHH
Confidence 999999999999999999975 567899999999999999742 2333455555443 332 2345666776544322
Q ss_pred chhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEEEecCCCCCCchhhhhhhhcCCe
Q 013596 271 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEV 349 (439)
Q Consensus 271 ~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVep~~s~~~~~~~~~sl~~G~~ 349 (439)
..+|.++|.|+.+| .++.+|+||+|+|+||+++|++.+++ .+|++|||||||+++. .+..|++
T Consensus 199 ----~~g~~ttg~EI~eq----~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~--------~~~~g~~ 262 (368)
T PLN02556 199 ----QVHFETTGPEIWED----TLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESN--------VLNGGKP 262 (368)
T ss_pred ----HHHHHHHHHHHHHh----cCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCc--------cccCCCC
Confidence 24777888887665 34479999999999999999999998 6899999999999972 2444443
Q ss_pred eeeccchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHH
Q 013596 350 GVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLL 429 (439)
Q Consensus 350 ~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~ 429 (439)
+ ++.+ .|++.... +. .+....+++++.|+|+|+++++++|+.++ |++++|++++++
T Consensus 263 ~-------------------~~~i-~g~g~~~~-p~--~~~~~~~d~~v~Vsd~ea~~a~r~l~~~e-Gi~vg~ssgA~~ 318 (368)
T PLN02556 263 G-------------------PHHI-TGNGVGFK-PD--ILDMDVMEKVLEVSSEDAVNMARELALKE-GLMVGISSGANT 318 (368)
T ss_pred C-------------------Ceee-eeccCCCC-cc--ccchhhCCeEEEECHHHHHHHHHHHHHHc-CCEEecCHHHHH
Confidence 2 2222 34442222 22 23344678999999999999999986554 999998888777
Q ss_pred HHHHhh
Q 013596 430 VNCLHK 435 (439)
Q Consensus 430 Aal~~~ 435 (439)
++.+..
T Consensus 319 ~aal~~ 324 (368)
T PLN02556 319 VAALRL 324 (368)
T ss_pred HHHHHH
Confidence 666643
No 60
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=1.1e-42 Score=353.02 Aligned_cols=265 Identities=22% Similarity=0.290 Sum_probs=206.9
Q ss_pred hcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHHHHHHHHHHH
Q 013596 119 YVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCAR 198 (439)
Q Consensus 119 ~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~ 198 (439)
.+| +|||+++++|++.+ +.+||+|+|++|||||||||++.+++..+.+.|.+ +|+++|+||||+|+|++|+.
T Consensus 25 ~~G-~TPL~~~~~l~~~~------g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~~-~vV~aSsGN~G~AlA~~aa~ 96 (351)
T PRK06352 25 AEG-NTPLIPLPNLSKEL------GVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGAE-AVICASTGNTSAAAAAYATR 96 (351)
T ss_pred CCC-CCCeeEcHhhHHHh------CCeEEEEecCCCCccChHHHHHHHHHHHHHHCCCC-EEEEECCcHHHHHHHHHHHH
Confidence 356 79999999999877 68999999999999999999999999999988865 68899999999999999999
Q ss_pred cCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhhh
Q 013596 199 FGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFH 278 (439)
Q Consensus 199 ~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~ 278 (439)
+|++|+||||+... +..|+.+|+.|||+|+.++. +++++.+.+.+. .++ +..|.+++ .||+ ...+|
T Consensus 97 ~G~~~~ivvp~~~~--~~~k~~~~~a~GA~V~~~~~---~~~~~~~~a~~~-~~~--~~~~~~~~---~n~~---~~~G~ 162 (351)
T PRK06352 97 AGLKAYIVIPEGKV--ALGKLAQAVMYGADIISIQG---NFDEALKSVREL-AET--EAVTLVNS---VNPY---RLEGQ 162 (351)
T ss_pred cCCcEEEEEeCCCC--cHHHHHHHHhcCCEEEEECC---CHHHHHHHHHHH-HHh--cCcccccC---CCcc---ceeeH
Confidence 99999999998631 46688899999999999974 477777665443 332 23344332 2333 23688
Q ss_pred HHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCC-----cEEEEEecCCCCCCchhhhhhhhcCCeeee
Q 013596 279 AVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKD-----VRLIGVEAAGFGLDSGKHAATLSKGEVGVL 352 (439)
Q Consensus 279 ~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~-----vrvigVep~~s~~~~~~~~~sl~~G~~~~~ 352 (439)
.++|+|+.+|+ +..||+||+|+|+||+++|++.+|+ .+|. +|||+|||+++. .+..|++.
T Consensus 163 ~t~~~EI~~Q~----~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~--------~~~~g~~~-- 228 (351)
T PRK06352 163 KTAAFEICEQL----GSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAA--------AIVQGKPI-- 228 (351)
T ss_pred HHHHHHHHHHc----CCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCC--------HHHhCCCc--
Confidence 99999987775 5569999999999999999999998 4554 899999999973 24445432
Q ss_pred ccchhhhccccCCCccCCcccccccCCCCCCCchhhhh---hcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHH
Q 013596 353 HGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLK---DEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLL 429 (439)
Q Consensus 353 ~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~---~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~ 429 (439)
..++++++|+.++.. ..+.... +...++++.|+|+|+++|+++|+. +.++++||++|+++
T Consensus 229 ---------------~~~~~ia~~l~~~~~-~~~~~~~~~~d~~~g~~~~V~d~e~~~a~r~la~-~eGi~vepssaaal 291 (351)
T PRK06352 229 ---------------DNPETIATAIRIGNP-ASWGLAEAARDESGGYIHSVTDDEIVNAYKKIAA-QDGVFIEPGSAASL 291 (351)
T ss_pred ---------------CCCCcceeEEEeCCC-CcHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHh-hcCceEchhHHHHH
Confidence 125678888765431 1222221 122346999999999999998854 45999999999999
Q ss_pred HHHHhhh
Q 013596 430 VNCLHKL 436 (439)
Q Consensus 430 Aal~~~~ 436 (439)
|+++...
T Consensus 292 Aa~~~~~ 298 (351)
T PRK06352 292 AGVIQHV 298 (351)
T ss_pred HHHHHHH
Confidence 9998654
No 61
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=2.3e-42 Score=356.37 Aligned_cols=273 Identities=23% Similarity=0.339 Sum_probs=216.5
Q ss_pred hcCCCCcccchhhhhhHhcCCCCCCC-eEEEEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHHHHHHHHHH
Q 013596 119 YVGRETPLYFAERLTEHYRRPNGGGP-HIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCA 197 (439)
Q Consensus 119 ~ig~~TPL~~~~~l~~~l~~~~~~g~-~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~ 197 (439)
.+| +|||+++++|++.+ +. +||+|+|++|||||||||++.+.+..+++.|.+ +|+++|+||||+|+|++|+
T Consensus 64 ~~G-~TPLv~~~~l~~~~------g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~~-~vv~aSsGN~g~alA~~aa 135 (397)
T PRK06260 64 NEG-GTPLYRCPNLEKEL------GVKELYVKHEGANPTGSFKDRGMTVGVTKALELGVK-TVACASTGNTSASLAAYAA 135 (397)
T ss_pred CCC-CCCeEEchhhHHHh------CCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCCC-EEEEeCCcHHHHHHHHHHH
Confidence 345 69999999999887 55 999999999999999999999999999988875 6778999999999999999
Q ss_pred HcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhh
Q 013596 198 RFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDF 277 (439)
Q Consensus 198 ~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g 277 (439)
.+|++|+||||+... +..|+.+|+.+||+|+.++. +++++.+.+.+. .++ ..+|+++++ ||+. ..+
T Consensus 136 ~~G~~~~i~vP~~~~--~~~k~~~~~~~GA~vi~v~~---~~~~~~~~a~~~-~~~--~g~y~~~~~---np~~---~~G 201 (397)
T PRK06260 136 RAGLKCYVLLPAGKV--ALGKLAQALLHGAKVLEVDG---NFDDALDMVVEL-AKE--GKIYLLNSI---NPFR---LEG 201 (397)
T ss_pred HcCCcEEEEEeCCCc--cHHHHHHHHhcCCEEEEECC---cHHHHHHHHHHH-Hhh--CCEEeecCC---Cchh---hcc
Confidence 999999999998621 45688889999999999974 578877665543 332 347777654 5554 378
Q ss_pred hHHhHHHHHHHHHHHhCC-CCCEEEEcCCchHHHHHHHHHHhc-------CCCcEEEEEecCCCCCCchhhhhhhhcCCe
Q 013596 278 HAVIGKETRRQALEKWGG-KPDVLIACVGGGSNAMGLFHEFVN-------DKDVRLIGVEAAGFGLDSGKHAATLSKGEV 349 (439)
Q Consensus 278 ~~~ig~E~~~Qi~e~~g~-~~d~vvvpvG~GG~~aGi~~~~~~-------~p~vrvigVep~~s~~~~~~~~~sl~~G~~ 349 (439)
|.++++|+.+|+ +. .||+||+|+|+||+++|++.+|+. .+.+|||+||++++ ..+..++..|..
T Consensus 202 ~~t~a~Ei~eQl----~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~----~~~~~a~~~g~~ 273 (397)
T PRK06260 202 QKTIGFEIADQL----GWEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGA----APIVEAIKKGKD 273 (397)
T ss_pred hhhHHHHHHHHh----CCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCC----cHHHHHHHcCCC
Confidence 999999988776 43 599999999999999999999972 24589999999998 457777777765
Q ss_pred eeeccchhhhccccCCCccCCcccccccCCCCC--CCc-hhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHH
Q 013596 350 GVLHGALSYLLQNEDGQIIEPHSISAGLDYPGV--GPE-HSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGL 426 (439)
Q Consensus 350 ~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~v--g~~-~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA 426 (439)
... ....+.|+++|+.++.. .+. +..+++ ..++++.|+|+|+++|+++|+.+ .|+++||++|
T Consensus 274 ~~~-------------~~~~~~tia~~i~i~~p~~~~~~~~~l~~-~~g~~v~V~d~e~~~a~~~la~~-eGi~vepssa 338 (397)
T PRK06260 274 EIE-------------PVENPETVATAIRIGNPVNAPKALRAIRE-SGGTAEAVSDEEILDAQKLLARK-EGIGVEPASA 338 (397)
T ss_pred ccc-------------ccCCCCceeeeeEeCCCCCHHHHHHHHHH-HCCEEEEECHHHHHHHHHHHHHh-CCCeeCchHH
Confidence 321 12236789988875322 111 123433 45789999999999999988544 4999999999
Q ss_pred HHHHHHHhhh
Q 013596 427 WLLVNCLHKL 436 (439)
Q Consensus 427 ~a~Aal~~~~ 436 (439)
+++|+++...
T Consensus 339 aalAa~~~l~ 348 (397)
T PRK06260 339 ASVAGLIKLV 348 (397)
T ss_pred HHHHHHHHHH
Confidence 9999997653
No 62
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=3.2e-42 Score=350.23 Aligned_cols=268 Identities=23% Similarity=0.279 Sum_probs=207.7
Q ss_pred hhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHHHHHHHHH
Q 013596 117 RDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVC 196 (439)
Q Consensus 117 ~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~aa 196 (439)
.-.+| +|||+++++|+..+ +.+||+|+|++|||||||||++.+++..+.+.+.+ .|+++|+||||+++|++|
T Consensus 26 ~l~~g-~TPl~~~~~l~~~~------g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~~-~iv~aSsGN~g~alA~~a 97 (353)
T PRK07409 26 TLGEG-NTPLIPAPNLSELL------GVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGAK-AVICASTGNTSASAAAYA 97 (353)
T ss_pred cCCCC-CCCEEEchhhHHHh------CCeEEEEecCCCCccchHHHHHHHHHHHHHHCCCC-EEEEECCcHHHHHHHHHH
Confidence 33456 69999999999876 78999999999999999999999999999887765 678899999999999999
Q ss_pred HHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhh
Q 013596 197 ARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRD 276 (439)
Q Consensus 197 ~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~ 276 (439)
+.+|++|+||||+... +..|+++|+.|||+|+.++. +++++.+.+.+ +.++ .. .|++++ .||+ ...
T Consensus 98 ~~~G~~~~ivvP~~~~--~~~k~~~~~~~GA~Vi~~~~---~~~~~~~~a~~-l~~~-~~-~~~~~~---~n~~---~~~ 163 (353)
T PRK07409 98 ARAGLKAFVLIPEGKI--ALGKLAQAVMYGAEIIQIDG---NFDDALEIVRE-LAEK-YP-VTLVNS---VNPY---RIE 163 (353)
T ss_pred HHcCCCEEEEEcCCCC--chhhHHHHHhcCCEEEEECC---CHHHHHHHHHH-HHHh-cC-ceecCC---CCch---hhh
Confidence 9999999999999632 35688899999999999974 57887765544 3332 22 455433 2343 236
Q ss_pred hhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHhc-------CCCcEEEEEecCCCCCCchhhhhhhhcCCe
Q 013596 277 FHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVN-------DKDVRLIGVEAAGFGLDSGKHAATLSKGEV 349 (439)
Q Consensus 277 g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~~-------~p~vrvigVep~~s~~~~~~~~~sl~~G~~ 349 (439)
+|.++|+|+.+|+ +..||+||+|+|+||+++|++.+++. .+.+|||+|||+++. ++..|++
T Consensus 164 g~~t~~~EI~~q~----~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~--------~~~~g~~ 231 (353)
T PRK07409 164 GQKTAAFEIVDAL----GDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAA--------PIVRGEP 231 (353)
T ss_pred hHHHHHHHHHHHh----CCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCC--------hHhhCCc
Confidence 8889999987775 44699999999999999999999862 235999999999862 3334443
Q ss_pred eeeccchhhhccccCCCccCCcccccccCCCCCCCchh--hhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHH
Q 013596 350 GVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHS--FLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLW 427 (439)
Q Consensus 350 ~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~--~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~ 427 (439)
. ..+.|+++||+++.+..... .+.+...++++.|+|+|+++++++|+ +++++++||++|+
T Consensus 232 ~-----------------~~~~ti~~~l~~~~~~~~~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~-~~egi~v~pssa~ 293 (353)
T PRK07409 232 V-----------------KNPETIATAIRIGNPASWDKAVAARDESGGLIDAVTDEEILEAYRLLA-RKEGVFCEPASAA 293 (353)
T ss_pred C-----------------CCCcceeeeeecCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHH-HhCCceeCchHHH
Confidence 2 12568888887532222111 12233457899999999999999885 5559999999999
Q ss_pred HHHHHHhhh
Q 013596 428 LLVNCLHKL 436 (439)
Q Consensus 428 a~Aal~~~~ 436 (439)
++|+++...
T Consensus 294 alaa~~~~~ 302 (353)
T PRK07409 294 SVAGLLKAI 302 (353)
T ss_pred HHHHHHHHH
Confidence 999987643
No 63
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=8.2e-42 Score=346.91 Aligned_cols=266 Identities=23% Similarity=0.313 Sum_probs=206.2
Q ss_pred hcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHHHHHHHHHHH
Q 013596 119 YVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCAR 198 (439)
Q Consensus 119 ~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~ 198 (439)
.+| +|||+++++|++.+ +.+||+|+|++|||||||||++.+++..+++.|.+ +|+++|+||||+|+|++|+.
T Consensus 25 ~~G-~TPl~~l~~l~~~~------g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~~-~vV~aSsGN~G~alA~~aa~ 96 (352)
T PRK06721 25 MEG-NTPLIPLLNISKQL------GIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGSE-AIICASTGNTSASAAAYAAR 96 (352)
T ss_pred CcC-CCCeeEchhhHHHh------CCeEEEEecCCCCccchHHHHHHHHHHHHHHCCCC-EEEEECCcHHHHHHHHHHHH
Confidence 356 69999999999877 68999999999999999999999999999888864 67889999999999999999
Q ss_pred cCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhhh
Q 013596 199 FGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFH 278 (439)
Q Consensus 199 ~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~ 278 (439)
+|++|+||||+... ++.|+++|+.+||+|+.++. +++++.+.+.+ +.++ ..+|+++ .. ||+ ...+|
T Consensus 97 ~G~~~~vvvp~~~~--~~~k~~~~~~~GA~V~~~~~---~~~~~~~~a~~-~~~~--~~~~~~~-~~--n~~---~~~G~ 162 (352)
T PRK06721 97 LGMKCIIVIPEGKI--AHGKLAQAVAYGAEIISIEG---NFDDALKAVRN-IAAE--EPITLVN-SV--NPY---RIEGQ 162 (352)
T ss_pred CCCcEEEEECCCCC--CHHHHHHHHHcCCEEEEECC---CHHHHHHHHHH-HHHh--CCceecc-CC--Cch---hhhhh
Confidence 99999999998632 35688899999999999974 47777655544 3332 2345443 22 343 23688
Q ss_pred HHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHH----h-c-CCCcEEEEEecCCCCCCchhhhhhhhcCCeeee
Q 013596 279 AVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEF----V-N-DKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVL 352 (439)
Q Consensus 279 ~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~----~-~-~p~vrvigVep~~s~~~~~~~~~sl~~G~~~~~ 352 (439)
.++|+|+.+|+ +..||+||+|+|+||+++|++.++ + . +|.+|||||||+++. .+..|+.
T Consensus 163 ~t~~~Ei~eq~----~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~--------~~~~g~~--- 227 (352)
T PRK06721 163 KTAAFEICDQL----QRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAA--------AIVKGHV--- 227 (352)
T ss_pred hhHHHHHHHHh----CCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCC--------hHhhCCc---
Confidence 99999988776 446999999999999999866554 3 3 489999999999873 2444432
Q ss_pred ccchhhhccccCCCccCCcccccccCCCCCCCch--hhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHHH
Q 013596 353 HGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEH--SFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLV 430 (439)
Q Consensus 353 ~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~--~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~A 430 (439)
+..++|++++|+++.+.... ....+...++++.|+|+|+++|+++|+ +++|+++||++++++|
T Consensus 228 --------------~~~~~tia~~l~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la-~~eGi~vepssgaala 292 (352)
T PRK06721 228 --------------IDEPETIATAIRIGNPASWSYAVEAAEQSHGEIDMVSDEEILHAYRLLA-KSEGVFAEPGSNASLA 292 (352)
T ss_pred --------------CCCCCceeeccccCCCCCHHHHHHHHHhcCCEEEEECHHHHHHHHHHHH-HhcCcccCchHHHHHH
Confidence 12357888888754322111 111233678999999999999999885 4559999999999999
Q ss_pred HHHhhh
Q 013596 431 NCLHKL 436 (439)
Q Consensus 431 al~~~~ 436 (439)
+++...
T Consensus 293 a~~~~~ 298 (352)
T PRK06721 293 GVMKHV 298 (352)
T ss_pred HHHHHH
Confidence 998754
No 64
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=7.9e-42 Score=344.74 Aligned_cols=256 Identities=20% Similarity=0.198 Sum_probs=200.9
Q ss_pred hcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHHHHHHHHHHH
Q 013596 119 YVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCAR 198 (439)
Q Consensus 119 ~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~ 198 (439)
..| .|||++. .+||+|+|++|||||||||++.+++..+++.|.+ .|+++|+||||.|+|++|++
T Consensus 55 geG-~TPLv~~--------------~~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~~-~vv~aSsGN~g~slA~~aa~ 118 (338)
T PRK06450 55 GEG-RTPLIKK--------------GNIWFKLDFLNPTGSYKDRGSVTLISYLAEKGIK-QISEDSSGNAGASIAAYGAA 118 (338)
T ss_pred CCC-CCCceec--------------CCEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCC-EEEEECCcHHHHHHHHHHHH
Confidence 456 5999974 3799999999999999999999999999988865 67899999999999999999
Q ss_pred cCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhhh
Q 013596 199 FGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFH 278 (439)
Q Consensus 199 ~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~ 278 (439)
+|++|+||||+.. ++.|+.+|+.|||+|+.++. +++++.+.+ + . ...|+++++. ||+. ++||
T Consensus 119 ~G~~~~i~vP~~~---~~~k~~~i~~~GA~vi~v~~---~~~~~~~~a-----~-~-~g~~~~~~~~--np~~---ieG~ 180 (338)
T PRK06450 119 AGIEVKIFVPETA---SGGKLKQIESYGAEVVRVRG---SREDVAKAA-----E-N-SGYYYASHVL--QPQF---RDGI 180 (338)
T ss_pred cCCCEEEEEcCCC---CHHHHHHHHHcCCEEEEECC---CHHHHHHHH-----H-h-cCeEeccCCC--CccH---HHHH
Confidence 9999999999975 57799999999999999974 466654431 1 1 2334444443 4543 4789
Q ss_pred HHhHHHHHHHHHHHhC-CCCCEEEEcCCchHHHHHHHHHHhc-------CCCcEEEEEecCCCCCCchhhhhhhhcCCee
Q 013596 279 AVIGKETRRQALEKWG-GKPDVLIACVGGGSNAMGLFHEFVN-------DKDVRLIGVEAAGFGLDSGKHAATLSKGEVG 350 (439)
Q Consensus 279 ~~ig~E~~~Qi~e~~g-~~~d~vvvpvG~GG~~aGi~~~~~~-------~p~vrvigVep~~s~~~~~~~~~sl~~G~~~ 350 (439)
.|+|+|+.+|+ + ..||+||+|+|+||+++|++.+|+. ++.+|||+|||+++ ..++.++..+.+.
T Consensus 181 kTia~EI~eql----~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~----~p~~~a~~~~~~~ 252 (338)
T PRK06450 181 RTLAYEIAKDL----DWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQV----SPLCAKFKGISYT 252 (338)
T ss_pred HHHHHHHHHHc----CCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCC----CHHHHHhcCCCCC
Confidence 99999987775 4 3599999999999999999999972 24589999999998 4567777633221
Q ss_pred eeccchhhhccccCCCccCCcccccccCCCCCCCc---hhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHH
Q 013596 351 VLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPE---HSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLW 427 (439)
Q Consensus 351 ~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~---~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~ 427 (439)
. ...+.|+++||..+.+... +..+++ . ++++.|+|+|+++|+++|+ ++ |+++||++|+
T Consensus 253 ~---------------~~~~~tia~~l~~~~p~~~~~~~~~i~~-~-g~~v~V~d~ei~~a~~~La-~~-Gi~vepssaa 313 (338)
T PRK06450 253 P---------------PDKVTSIADALVSTRPFLLDYMVKALSE-Y-GECIVVSDNEIVEAWKELA-KK-GLLVEYSSAT 313 (338)
T ss_pred C---------------CCCCCcceeeeecCCCCCHHHHHHHHHh-c-CcEEEECHHHHHHHHHHHH-Hc-CCEEChhHHH
Confidence 1 2246799999975433221 233444 3 7899999999999999885 44 9999999999
Q ss_pred HHHHHHhh
Q 013596 428 LLVNCLHK 435 (439)
Q Consensus 428 a~Aal~~~ 435 (439)
++|++...
T Consensus 314 alAa~~~l 321 (338)
T PRK06450 314 VYAAYKKY 321 (338)
T ss_pred HHHHHHHC
Confidence 99998763
No 65
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=7.3e-42 Score=344.11 Aligned_cols=271 Identities=20% Similarity=0.189 Sum_probs=210.2
Q ss_pred CCCcccchhhhhhHhcCCCCCCC-eEEEEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHHHHHHHHHHHcC
Q 013596 122 RETPLYFAERLTEHYRRPNGGGP-HIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFG 200 (439)
Q Consensus 122 ~~TPL~~~~~l~~~l~~~~~~g~-~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~G 200 (439)
.+|||++++++++.+ +. +||+|+|++|||||||||++.+++..+.+.+.. +|+++|+||||+|+|++|+.+|
T Consensus 22 g~TPl~~~~~l~~~~------g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~~-~vv~aSsGN~g~a~A~~a~~~g 94 (328)
T TIGR00260 22 GVTPLFRSPALVANV------GIKNLYVLELFHNPTLSFKDRGMAVALTKALELGND-TVLCASTGNTGAAAAAYAGKAG 94 (328)
T ss_pred CCccCccchHHHHhc------CCccEEehhhccCCchhhHhhhHHHHHHHHHHcCCC-EEEEeCCcHHHHHHHHHhccCC
Confidence 479999999999876 55 999999999999999999999999988887754 6788999999999999999999
Q ss_pred CeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhhhHH
Q 013596 201 LQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAV 280 (439)
Q Consensus 201 i~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ 280 (439)
++|+||||+... ++.|+.+++.+||+|+.++. +++++.+.+.+. .++ ...|.+++.++. |++ ..+|.+
T Consensus 95 ~~~~v~~p~~~~--s~~k~~~~~~~GA~Vi~~~~---~~~~~~~~~~~~-~~~--~~~~~~~~~n~~-~~~---~~g~~t 162 (328)
T TIGR00260 95 VKVVILYPAGKI--SLGKLAQALGYNAEVVAIDG---NFDDAQRLVKQL-FGD--KEALGLNSVNSI-PYR---LEGQKT 162 (328)
T ss_pred CcEEEEECCCCC--CHHHHHHHHhcCcEEEEecC---CHHHHHHHHHHH-Hhh--cCeeecccCCCC-CeE---eeeehh
Confidence 999999999722 46789999999999999974 577877655443 332 234555544332 554 378889
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHhc--------CCCcEEEEEecCCCCCCchhhhhhh-hcCCeee
Q 013596 281 IGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVN--------DKDVRLIGVEAAGFGLDSGKHAATL-SKGEVGV 351 (439)
Q Consensus 281 ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~~--------~p~vrvigVep~~s~~~~~~~~~sl-~~G~~~~ 351 (439)
+++|+.+|+.. ..+|+||+|+|+||+++|++.+|+. .| ++++|||++++ .+...+ ..|++..
T Consensus 163 ~~~Ei~~q~~~---~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p--~v~~Ve~~~~~----~~~~~~~~~g~~~~ 233 (328)
T TIGR00260 163 YAFEAVEQLGW---EAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLP--VKRGIQAEGAA----DIVRAFLESGQWEP 233 (328)
T ss_pred HHHHHHHHhCC---CCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCC--ceeEEEcCCCC----hHHHHHHcCCCcCc
Confidence 99998877621 2689999999999999999999973 45 99999999973 344444 3444321
Q ss_pred eccchhhhccccCCCccCCcccccccCCCCCCC--chhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHH
Q 013596 352 LHGALSYLLQNEDGQIIEPHSISAGLDYPGVGP--EHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLL 429 (439)
Q Consensus 352 ~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~--~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~ 429 (439)
.....|+++||+++.+.. ....+.+...++++.|+|+|+++++++|+ ++++++++|++|+++
T Consensus 234 ---------------~~~~~t~~~~l~~~~p~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~-~~~gi~~~pssa~al 297 (328)
T TIGR00260 234 ---------------IEDPATLSTAIDIGNPANWERALELFRRSNGNAEDVSDEEILEAIKLLA-REEGYFVEPHSAVSV 297 (328)
T ss_pred ---------------CCCCCccCcceecCCCCCHHHHHHHHHhcCCcEEecCHHHHHHHHHHHH-HhcCeeECchHHHHH
Confidence 123478889887542221 12223344678999999999999999885 445999999999999
Q ss_pred HHHHhhh
Q 013596 430 VNCLHKL 436 (439)
Q Consensus 430 Aal~~~~ 436 (439)
|+++...
T Consensus 298 aa~~~~~ 304 (328)
T TIGR00260 298 AALLKLV 304 (328)
T ss_pred HHHHHHH
Confidence 9998654
No 66
>PLN02569 threonine synthase
Probab=100.00 E-value=2.5e-41 Score=354.34 Aligned_cols=273 Identities=17% Similarity=0.171 Sum_probs=213.9
Q ss_pred cCCCCcccchhhhhhH-hcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCC----CeeEEecCcchHHHHHHH
Q 013596 120 VGRETPLYFAERLTEH-YRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK----TRIIAETGAGQHGVATAT 194 (439)
Q Consensus 120 ig~~TPL~~~~~l~~~-l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~----~~~Vv~aSsGNhG~AlA~ 194 (439)
.| .|||+++++|.+. + +..+||+|+|++|||||||||++...+..+++.|. ...|+++|+||||+|+|+
T Consensus 131 eG-~TPLv~~~~l~~~~~-----G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAa 204 (484)
T PLN02569 131 EG-NSNLFWAERLGKEFL-----GMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSA 204 (484)
T ss_pred CC-CCceeEhhhhhHhhc-----CCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHH
Confidence 35 6999999999987 6 12699999999999999999999999988877654 246889999999999999
Q ss_pred HHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhh
Q 013596 195 VCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMV 274 (439)
Q Consensus 195 aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v 274 (439)
+|+.+|++|+||||++.. +..|+.+|+.|||+|+.++. +++++.+.+.+. .++ ..+|+++++ ||++
T Consensus 205 yaa~~Gl~~~I~vP~~~~--~~~k~~qi~a~GA~Vi~v~g---~~d~a~~~a~e~-~~~--~~~~~~n~~---Np~~--- 270 (484)
T PLN02569 205 YCAAAGIPSIVFLPADKI--SIAQLVQPIANGALVLSIDT---DFDGCMRLIREV-TAE--LPIYLANSL---NSLR--- 270 (484)
T ss_pred HHHhcCCeEEEEEcCCCC--CHHHHHHHHhcCCEEEEECC---CHHHHHHHHHHH-HHH--cCCEecCCC---Ccch---
Confidence 999999999999999632 45788999999999999974 588887766553 222 346777665 5554
Q ss_pred hhhhHHhHHHHHHHHHHHhCC-CCCEEEEcCCchHHHHHHHHHHhc-------CCCcEEEEEecCCCCCCchhhhhhhhc
Q 013596 275 RDFHAVIGKETRRQALEKWGG-KPDVLIACVGGGSNAMGLFHEFVN-------DKDVRLIGVEAAGFGLDSGKHAATLSK 346 (439)
Q Consensus 275 ~~g~~~ig~E~~~Qi~e~~g~-~~d~vvvpvG~GG~~aGi~~~~~~-------~p~vrvigVep~~s~~~~~~~~~sl~~ 346 (439)
.+||.|+++|+.+|+ ++ .||+||+|+|+||+++|++.+|+. ++.+|||+||++++ +.++.++..
T Consensus 271 ieG~kT~a~EI~eQl----~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~----~pl~~a~~~ 342 (484)
T PLN02569 271 LEGQKTAAIEILQQF----DWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANA----NPLYRAYKS 342 (484)
T ss_pred hHhHHHHHHHHHHHc----CCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCC----cHHHHHHHc
Confidence 379999999987765 54 499999999999999999999973 46789999999998 467788887
Q ss_pred CCeeeeccchhhhccccCCCccCCcccccccCCCCCCCc--hhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchh
Q 013596 347 GEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPE--HSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHG 424 (439)
Q Consensus 347 G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~--~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epa 424 (439)
|..... .....+|+++|++.+.+... .....+...+.++.|+|+|+++|+++ +. +.|+++||+
T Consensus 343 G~~~~~-------------~~~~~~T~A~gi~i~~P~~~~~~l~al~~s~g~~v~VsDeEi~~a~~~-a~-~~Gi~veps 407 (484)
T PLN02569 343 GWEEFK-------------PVKANPTFASAIQIGDPVSIDRAVYALKESNGIVEEATEEELMDAQAE-AD-KTGMFLCPH 407 (484)
T ss_pred CCCccc-------------cCCCCCccchhhccCCCccHHHHHHHHHHhCCEEEEECHHHHHHHHHH-HH-HCCcEECch
Confidence 754210 02246799999885432221 11122223467899999999999997 44 449999999
Q ss_pred HHHHHHHHHhh
Q 013596 425 GLWLLVNCLHK 435 (439)
Q Consensus 425 gA~a~Aal~~~ 435 (439)
+|+++|++...
T Consensus 408 sAaalAal~kl 418 (484)
T PLN02569 408 TGVALAALKKL 418 (484)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 67
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=3.1e-41 Score=353.48 Aligned_cols=274 Identities=21% Similarity=0.261 Sum_probs=206.2
Q ss_pred HhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCC---CeeEEecCcchHHHHH
Q 013596 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---TRIIAETGAGQHGVAT 192 (439)
Q Consensus 116 i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~---~~~Vv~aSsGNhG~Al 192 (439)
+.+++| +|||+++++|++.+ +.+||+|+|++|||||||+|++.+++..+.+.|. +++|+++|+||||+|+
T Consensus 5 ~~~~~~-~TPl~~~~~l~~~~------~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~~ssGN~g~al 77 (454)
T TIGR01137 5 IIDLIG-NTPLVRLNKVSKGI------KCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGDTIIEPTSGNTGIGL 77 (454)
T ss_pred hHHhcC-CCceEEccccCCCC------CceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHH
Confidence 556776 79999999998765 6899999999999999999999999999988765 2468899999999999
Q ss_pred HHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHH--HHHHHHHHHHHccCCceEEecccCCCCCc
Q 013596 193 ATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKD--ATSEAIRDWVTNVETTHYILGSVAGPHPY 270 (439)
Q Consensus 193 A~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~d--a~~~a~~~~~~~~~~~~y~~~s~~~~~p~ 270 (439)
|++|+.+|++|+||||+.. ++.|+++|+.|||+|+.++... .+++ ...+..+++.++.. ..|+++|++|+.+
T Consensus 78 A~~a~~~G~~~~iv~p~~~---~~~k~~~~~~~GA~v~~~~~~~-~~~~~~~~~~~a~~l~~~~~-~~~~~~~~~~~~~- 151 (454)
T TIGR01137 78 ALVAAIKGYKCIIVLPEKM---SNEKVDVLKALGAEIVRTPTAA-AFDSPESHIGVAKRLVREIP-GAHILDQYNNPSN- 151 (454)
T ss_pred HHHHHHcCCeEEEEeCCCc---CHHHHHHHHHCCCEEEEcCCcc-CCCchHHHHHHHHHHHHhCC-CcEecccCCChhh-
Confidence 9999999999999999865 4568999999999999997421 1222 11122223333322 3566777765432
Q ss_pred chhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEEEecCCCCCCchhhhhhhhcCCe
Q 013596 271 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEV 349 (439)
Q Consensus 271 ~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVep~~s~~~~~~~~~sl~~G~~ 349 (439)
+..+|.++|.|+.+|+ ++.||+||+|+|+||+++|++.+++ ..|.+|||||||+++. +..++.
T Consensus 152 ---~~~~~~t~~~Ei~~q~----~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~---------~~~~~~ 215 (454)
T TIGR01137 152 ---PLAHYDGTGPEILEQC----EGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSI---------LAQPEN 215 (454)
T ss_pred ---HHHHHHhhHHHHHHHh----CCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCc---------ccCCCc
Confidence 1246788888887665 4469999999999999999999998 6899999999999872 222221
Q ss_pred eeeccchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHH
Q 013596 350 GVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLL 429 (439)
Q Consensus 350 ~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~ 429 (439)
.. ......+.+.|++.+.+ + ..+.....++++.|+|+|+++++++|+. ++|++++|++++++
T Consensus 216 ~~--------------~~~~~~~~~~g~~~~~~-~--~~~~~~~~d~~~~V~~~e~~~a~~~l~~-~~gi~~~~ssg~~~ 277 (454)
T TIGR01137 216 LN--------------KTGRTPYKVEGIGYDFI-P--TVLDRKVVDEWIKTDDKESFKMARRLIK-EEGLLVGGSSGSAV 277 (454)
T ss_pred cc--------------CCCCCCccCCCCCCCCC-C--CcCCchhCCeEEEECHHHHHHHHHHHHH-HhCccCcHHHHHHH
Confidence 10 00011245566653311 1 1233445789999999999999998864 45999999999999
Q ss_pred HHHHhhh
Q 013596 430 VNCLHKL 436 (439)
Q Consensus 430 Aal~~~~ 436 (439)
++++...
T Consensus 278 aa~~~~~ 284 (454)
T TIGR01137 278 VAALKAA 284 (454)
T ss_pred HHHHHHH
Confidence 9998754
No 68
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=2e-40 Score=346.21 Aligned_cols=266 Identities=18% Similarity=0.168 Sum_probs=210.0
Q ss_pred hhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHHHHHHHHH
Q 013596 117 RDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVC 196 (439)
Q Consensus 117 ~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~aa 196 (439)
.-..| .|||++++ +++.+ +.+||+|+|++|||||||||++.+++..+.+.+.+ .|+++|+||||+|+|++|
T Consensus 61 ~l~~G-~TPLv~~~-~~~~~------g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~~-~vv~aSsGN~g~alA~~a 131 (442)
T PRK05638 61 SLGEG-GTPLIRAR-ISEKL------GENVYIKDETRNPTGSFRDRLATVAVSYGLPYAAN-GFIVASDGNAAASVAAYS 131 (442)
T ss_pred ccCCC-CCcEEccc-chHHh------CCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcCCC-EEEEeCCChHHHHHHHHH
Confidence 33456 69999984 77766 67999999999999999999999999988888765 567899999999999999
Q ss_pred HHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhh
Q 013596 197 ARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRD 276 (439)
Q Consensus 197 ~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~ 276 (439)
+.+|++|+||||+.. +..|+.+|+.|||+|+.++. +++++.+.+.+. .+ +..+|+++++. ||+. .+
T Consensus 132 a~~G~~~~i~vp~~~---~~~k~~~~~~~GA~vi~v~~---~~~~~~~~a~~~-~~--~~~~~~~~~~~--np~~---~e 197 (442)
T PRK05638 132 ARAGKEAFVVVPRKV---DKGKLIQMIAFGAKIIRYGE---SVDEAIEYAEEL-AR--LNGLYNVTPEY--NIIG---LE 197 (442)
T ss_pred HHcCCCEEEEEeCCC---CHHHHHHHHhcCcEEEEECC---CHHHHHHHHHHH-HH--hCCeEecCCCC--ChhH---hh
Confidence 999999999999975 56789999999999999963 578887766543 22 23577776654 4443 37
Q ss_pred hhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHhc-C------CCcEEEEEecCCCCCCchhhhhhhhcCCe
Q 013596 277 FHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVN-D------KDVRLIGVEAAGFGLDSGKHAATLSKGEV 349 (439)
Q Consensus 277 g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~~-~------p~vrvigVep~~s~~~~~~~~~sl~~G~~ 349 (439)
||.++|+|+.+|+ + ||+||+|+|+||+++|++.+|+. . ..+|||+||++++ ..+..++..+..
T Consensus 198 G~~t~a~Ei~eq~----~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~----~p~~~~~~~~~~ 267 (442)
T PRK05638 198 GQKTIAFELWEEI----N--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERC----NPIASEILGNKT 267 (442)
T ss_pred hHHHHHHHHHHHH----C--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCC----CHHHHHHhcCCC
Confidence 8999999998876 3 89999999999999999999973 2 3479999999988 456666654432
Q ss_pred eeeccchhhhccccCCCccCCcccccccCCCCC--CCc-hhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHH
Q 013596 350 GVLHGALSYLLQNEDGQIIEPHSISAGLDYPGV--GPE-HSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGL 426 (439)
Q Consensus 350 ~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~v--g~~-~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA 426 (439)
....|+++|+.++.+ ++. +..+++ ..+.++.|+|+++.++++.+ .++ |+++||++|
T Consensus 268 ------------------~~~~t~a~gl~~~~p~~~~~~~~~i~~-~~g~~~~v~d~~i~~a~~~l-~~e-Gi~~epssa 326 (442)
T PRK05638 268 ------------------KCNETKALGLYVKNPVMKEYVSEAIKE-SGGTAVVVNEEEIMAGEKLL-AKE-GIFAELSSA 326 (442)
T ss_pred ------------------CCCCceeeeEeeCCCCCHHHHHHHHHH-hCCEEEEECHHHHHHHHHHH-Hhc-CceecchHH
Confidence 125678888853222 111 233444 36889999999999999876 444 999999999
Q ss_pred HHHHHHHhhh
Q 013596 427 WLLVNCLHKL 436 (439)
Q Consensus 427 ~a~Aal~~~~ 436 (439)
+++|+++...
T Consensus 327 aa~Aa~~~~~ 336 (442)
T PRK05638 327 VVMPALLKLG 336 (442)
T ss_pred HHHHHHHHHH
Confidence 9999998753
No 69
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=7.7e-41 Score=331.96 Aligned_cols=278 Identities=31% Similarity=0.333 Sum_probs=207.0
Q ss_pred HhhhcCCCCcccchh-hhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHHHHHHH
Q 013596 116 LRDYVGRETPLYFAE-RLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATAT 194 (439)
Q Consensus 116 i~~~ig~~TPL~~~~-~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~ 194 (439)
|...++ +|||++++ .+.... .+.+||+|+|++|||||||+|++.+++..+++.+.+ .|+++|+||||.|+|+
T Consensus 1 i~~~~~-~TPl~~~~~~~~~~~-----~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~~~-~vv~assGN~g~a~A~ 73 (306)
T PF00291_consen 1 ISLGIG-PTPLVRLPSRLLSEL-----GGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKGGR-TVVGASSGNHGRALAY 73 (306)
T ss_dssp GGGGSS-SS-EEEEHEHHHHHC-----TTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTTS-EEEEESSSHHHHHHHH
T ss_pred CcCCCc-CCCEEECccccchhc-----cCCeEEEEECCCCCcCCcccccchhhhhhccccccc-eeeeeccCCceehhhh
Confidence 355675 79999976 333333 489999999999999999999999999999887765 5588999999999999
Q ss_pred HHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCC-CCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchh
Q 013596 195 VCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGT-ATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMM 273 (439)
Q Consensus 195 aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~-~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~ 273 (439)
+|+.+|++|+||||+.. ++.|+++|+.+||+|+.++... ..++++.+.+.+.+......... ++++ .+..
T Consensus 74 ~a~~~g~~~~i~~p~~~---~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~ 144 (306)
T PF00291_consen 74 AAARLGLKCTIVVPEDV---SPEKLKQMRALGAEVILVPGDVEGAFDDAQELAKERAELLSPFNGE-LNQY-----NNPN 144 (306)
T ss_dssp HHHHHTCEEEEEEETTS---HHHHHHHHHHTTCEEEEESSTHHHHHHHHHHHHHHHHHHHHHSTTE-ESTT-----TSHH
T ss_pred hhhhccccceeeecccc---ccccccceeeecceEEEccccccccccccccccccccccccccccc-cCcc-----cchh
Confidence 99999999999999975 5678999999999999987521 12344443333221100010111 3333 1224
Q ss_pred hhhhhHHhHHHHHHHHHHHhCCCCC--EEEEcCCchHHHHHHHHHHhc--CCCcEEEEEecCCCCCCchhhhhhhhcCCe
Q 013596 274 VRDFHAVIGKETRRQALEKWGGKPD--VLIACVGGGSNAMGLFHEFVN--DKDVRLIGVEAAGFGLDSGKHAATLSKGEV 349 (439)
Q Consensus 274 v~~g~~~ig~E~~~Qi~e~~g~~~d--~vvvpvG~GG~~aGi~~~~~~--~p~vrvigVep~~s~~~~~~~~~sl~~G~~ 349 (439)
...++.+++.|+.+|+. .|| .||+|+|+||+++|++.+++. .|.+|||+||+.++ +.+.+++..|++
T Consensus 145 ~~~g~~~~~~Ei~~q~~-----~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~~~~~vigv~~~~~----~~~~~~~~~g~~ 215 (306)
T PF00291_consen 145 VIAGYATIGLEIYEQLG-----KPDPDYVVVPVGTGGTAAGIAAGLKELILPPVRVIGVEPEGS----DPLYRSFKAGKP 215 (306)
T ss_dssp HHHHHHHHHHHHHHHHT-----TESESEEEEEESSSHHHHHHHHHHHHHCHTTSEEEEEEETTG----HHHHHHHHHTSC
T ss_pred hhhhhhhcchhcccccc-----cccceEEEecCCchhHHHHHHhhhhhhhcccccceeeeccCC----cccccccccccc
Confidence 55899999999887763 355 599999999999999999986 68999999999887 678889998887
Q ss_pred eeeccchhhhccccCCCccCCcccccccCCCC--CCCchhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHH
Q 013596 350 GVLHGALSYLLQNEDGQIIEPHSISAGLDYPG--VGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLW 427 (439)
Q Consensus 350 ~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~--vg~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~ 427 (439)
...+. .++++ ||+.+. .+.....+.+...++++.|+|+|+++++++|+ +++++++||++|+
T Consensus 216 ~~~~~---------------~~~~~-gl~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~-~~~gi~~~p~~a~ 278 (306)
T PF00291_consen 216 IRLPG---------------ESTIA-GLGVPMPFPGELDLELIDEYVGDVVGVSDEEALEAIRELA-EREGILVEPSSAA 278 (306)
T ss_dssp EHSSC---------------HHSST-GGTSSSCTTTTHHHHHHHHETEEEEEEEHHHHHHHHHHHH-HHHSB-B-HHHHH
T ss_pred ccccc---------------eeeee-cccCCccchhhhhhhhhhhccccccccchHHHHHHHHHHH-HHcCcEEcHHHHH
Confidence 53211 14555 887654 33333334444567899999999999999885 4459999999999
Q ss_pred HHHHHHhh
Q 013596 428 LLVNCLHK 435 (439)
Q Consensus 428 a~Aal~~~ 435 (439)
++++++..
T Consensus 279 a~aa~~~~ 286 (306)
T PF00291_consen 279 ALAAALKL 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
No 70
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=8.6e-40 Score=336.09 Aligned_cols=277 Identities=18% Similarity=0.127 Sum_probs=207.5
Q ss_pred CCcccchhhhhhHhcCCCCCCC-eEEE-------EeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHHHHHHH
Q 013596 123 ETPLYFAERLTEHYRRPNGGGP-HIYL-------KREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATAT 194 (439)
Q Consensus 123 ~TPL~~~~~l~~~l~~~~~~g~-~Iyl-------K~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~ 194 (439)
.|||+++++|++.+ |. ++|+ |+|++|||||||||++.+.+..+.+.+. +.|+++|+||||+|+|+
T Consensus 62 ~tpl~~~~~L~~~l------G~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g~-~~Vv~aSsGN~g~alA~ 134 (398)
T TIGR03844 62 GPVTYKSEGLAREL------GLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERGG-KTLVVASAGNTGRAFAE 134 (398)
T ss_pred CCceeehHHHHHHh------CCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHH
Confidence 58999999999988 55 9999 5566999999999999999999998885 46789999999999999
Q ss_pred HHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhh
Q 013596 195 VCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMV 274 (439)
Q Consensus 195 aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v 274 (439)
+|+++|++|+||||++.. .. +...++.+|++|+.++. +++++.+.+.+. .++ +.+|...+ ..||+ .
T Consensus 135 ~aa~~Gi~~~I~vP~~~~--~~-~~~~~~~~ga~vv~v~g---~~d~a~~~a~~~-a~~--~g~~~~~~--~~~p~---~ 200 (398)
T TIGR03844 135 VSAITGQPVILVVPKSSA--DR-LWTTEPASSVLLVTVDG---DYTDAIALADRI-ATL--PGFVPEGG--ARNVA---R 200 (398)
T ss_pred HHHHcCCcEEEEECCChH--HH-HHHHhhCCcEEEEECCC---CHHHHHHHHHHH-HHh--CCccccCC--CCCHH---H
Confidence 999999999999999753 22 22235789999999863 688888776553 322 22332211 12443 4
Q ss_pred hhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHhc--------CCCcEEEEEecCCCCCCchhhhhhhhc
Q 013596 275 RDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVN--------DKDVRLIGVEAAGFGLDSGKHAATLSK 346 (439)
Q Consensus 275 ~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~~--------~p~vrvigVep~~s~~~~~~~~~sl~~ 346 (439)
.+|+.|+++|+++|+ +..||+||+|+|+|+++.|++.+++. +..+|+++||++++ +.+++++..
T Consensus 201 ieG~~Ti~~Ei~eql----~~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~----~p~~~a~~~ 272 (398)
T TIGR03844 201 RDGMGTVMLDAAVTI----GSLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPF----VPMVNAWQE 272 (398)
T ss_pred HhhHHHHHHHHHHHc----CCCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCc----hHHHHHHHc
Confidence 589999999988775 43589999999999888899888763 24579999999998 678999999
Q ss_pred CCeeeeccchhhhccccCCC-ccCCcccccccCCCCC-CCc----hhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceE
Q 013596 347 GEVGVLHGALSYLLQNEDGQ-IIEPHSISAGLDYPGV-GPE----HSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLL 420 (439)
Q Consensus 347 G~~~~~~g~~~~~~~~~~g~-~~~~~tia~GL~~~~v-g~~----~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~ 420 (439)
|+....+.. +.... ..-..|+++||..+.+ +.. +..+++ ..++++.|+|+|+++|+++|+ ++.|++
T Consensus 273 g~~~~~~~~------~~~~~~~~~~~t~a~~l~i~~p~~~~~~~~l~air~-~~g~~v~Vsd~eI~~A~~~l~-~~~gi~ 344 (398)
T TIGR03844 273 GRREIIPES------DMPDAENSIEEVYSDVLTNRTPPYGVTGGVFDALIA-TGGQMYGVSNKEAVSAGKLFE-ESEGID 344 (398)
T ss_pred CCCcccccc------CCccccccccceecceeeeCCCCcchHHHHHHHHHH-hCCEEEEECHHHHHHHHHHHH-hhCCcc
Confidence 876432100 00000 0001588999964332 111 233444 568999999999999999885 444999
Q ss_pred EchhHHHHHHHHHhhh
Q 013596 421 SRHGGLWLLVNCLHKL 436 (439)
Q Consensus 421 ~epagA~a~Aal~~~~ 436 (439)
+||++|+++|+++...
T Consensus 345 vEpa~A~alAal~k~~ 360 (398)
T TIGR03844 345 ILPAAAVAVAALVKAV 360 (398)
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999999998753
No 71
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=1.6e-39 Score=329.48 Aligned_cols=251 Identities=19% Similarity=0.240 Sum_probs=198.1
Q ss_pred CCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHHHHHHHHHHHcCCe
Q 013596 123 ETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQ 202 (439)
Q Consensus 123 ~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~ 202 (439)
-|||+++ +.+||+|+|++|||||||||++.+++..+++.|.+ .|+++|+||||+|+|++|+++|++
T Consensus 64 ~Tpl~~~-------------~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~~-~vv~aSsGN~g~alA~~aa~~G~~ 129 (347)
T PRK08329 64 ITPTVKR-------------SIKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGIN-EVVIDSSGNAALSLALYSLSEGIK 129 (347)
T ss_pred CCccccC-------------CCeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCCC-EEEEECCCcHHHHHHHHHHHcCCc
Confidence 4999986 46899999999999999999999999999988875 677899999999999999999999
Q ss_pred EEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhhhHHhH
Q 013596 203 CIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIG 282 (439)
Q Consensus 203 ~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig 282 (439)
|+||||++. ++.|+.+|+.|||+|+.++. +++++...+.+ +.++ . ..|+++++ .||+. ..||.+++
T Consensus 130 ~~v~vp~~~---~~~k~~~~~~~GA~v~~v~~---~~~~~~~~a~~-l~~~-~-~~~~~~~~--~np~~---~eG~~t~~ 195 (347)
T PRK08329 130 VHVFVSYNA---SKEKISLLSRLGAELHFVEG---DRMEVHEEAVK-FSKR-N-NIPYVSHW--LNPYF---LEGTKTIA 195 (347)
T ss_pred EEEEECCCC---hHHHHHHHHHcCCEEEEECC---CHHHHHHHHHH-HHHh-c-CCeeccCC--CCchh---hccchhHH
Confidence 999999975 57799999999999999974 35666555433 2322 2 33444443 24553 37899999
Q ss_pred HHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHhc-------CCCcEEEEEecCCCCCCchhhhhhhhcCCeeeeccc
Q 013596 283 KETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVN-------DKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGA 355 (439)
Q Consensus 283 ~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~~-------~p~vrvigVep~~s~~~~~~~~~sl~~G~~~~~~g~ 355 (439)
+|+.+|+ + .||+||+|+|+||+++|++.+|+. ++.+|||+|||+++.+ +...
T Consensus 196 ~Ei~eql----~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~----~~~~------------ 254 (347)
T PRK08329 196 YEIYEQI----G-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYES----LCKR------------ 254 (347)
T ss_pred HHHHHHc----C-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCch----HHhc------------
Confidence 9988775 4 699999999999999999999973 3679999999998731 1110
Q ss_pred hhhhccccCCCccCCcccccccCCCCCCCc---hhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHHHHH
Q 013596 356 LSYLLQNEDGQIIEPHSISAGLDYPGVGPE---HSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVNC 432 (439)
Q Consensus 356 ~~~~~~~~~g~~~~~~tia~GL~~~~vg~~---~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~Aal 432 (439)
.....|+++|+.++.+... +..+++ ..+.++.|+|+|+++|+++|+ + .|+++||++|+++|++
T Consensus 255 -----------~~~~~t~a~gi~i~~~~~~~~~~~~l~~-~~g~~~~V~d~e~~~a~~~l~-~-~Gi~vepssa~a~Aa~ 320 (347)
T PRK08329 255 -----------SKSENKLADGIAIPEPPRKEEMLRALEE-SNGFCISVGEEETRAALHWLR-R-MGFLVEPTSAVALAAY 320 (347)
T ss_pred -----------cCCCCceeeeEEeCCCCCHHHHHHHHHH-hCCEEEEECHHHHHHHHHHHH-h-cCceECccHHHHHHHH
Confidence 1125788999886554332 233433 568899999999999999885 4 4999999999999999
Q ss_pred Hhhh
Q 013596 433 LHKL 436 (439)
Q Consensus 433 ~~~~ 436 (439)
+...
T Consensus 321 ~~l~ 324 (347)
T PRK08329 321 WKLL 324 (347)
T ss_pred HHHH
Confidence 8753
No 72
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=7.1e-39 Score=309.24 Aligned_cols=224 Identities=35% Similarity=0.470 Sum_probs=189.3
Q ss_pred CcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCC--CeeEEecCcchHHHHHHHHHHHcCC
Q 013596 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK--TRIIAETGAGQHGVATATVCARFGL 201 (439)
Q Consensus 124 TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~--~~~Vv~aSsGNhG~AlA~aa~~~Gi 201 (439)
|||++++++++.. +.+||+|+|++|||||||||++.+++..+.+.+. ..+|+++|+||||.|+|++|+.+|+
T Consensus 1 TPl~~~~~l~~~~------~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~vv~~ssGN~g~alA~~a~~~g~ 74 (244)
T cd00640 1 TPLVRLKRLSKLG------GANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKLPKGVIIESTGGNTGIALAAAAARLGL 74 (244)
T ss_pred CCeeEcccccccc------CCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCCCCCEEEEeCCcHHHHHHHHHHHHcCC
Confidence 8999999988753 7899999999999999999999999999998884 5678899999999999999999999
Q ss_pred eEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhhhHHh
Q 013596 202 QCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVI 281 (439)
Q Consensus 202 ~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~i 281 (439)
+|+||||... ++.|+++|+.+|++|+.++. +++++.+.+.+. .++ ....|+++++.| |+ ...+|.++
T Consensus 75 ~~~v~~p~~~---~~~~~~~~~~~Ga~v~~~~~---~~~~~~~~a~~~-~~~-~~~~~~~~~~~n--~~---~~~g~~~~ 141 (244)
T cd00640 75 KCTIVMPEGA---SPEKVAQMRALGAEVVLVPG---DFDDAIALAKEL-AEE-DPGAYYVNQFDN--PA---NIAGQGTI 141 (244)
T ss_pred CEEEEECCCC---CHHHHHHHHHCCCEEEEECC---CHHHHHHHHHHH-HHh-CCCCEecCCCCC--HH---HHHHHHHH
Confidence 9999999976 56789999999999999975 377777665443 332 244677666532 22 33788899
Q ss_pred HHHHHHHHHHHhCC-CCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEEEecCCCCCCchhhhhhhhcCCeeeeccchhhh
Q 013596 282 GKETRRQALEKWGG-KPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYL 359 (439)
Q Consensus 282 g~E~~~Qi~e~~g~-~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVep~~s~~~~~~~~~sl~~G~~~~~~g~~~~~ 359 (439)
+.|+.+|+ +. .||+||+|+|+||+++|++.+|+ ..|.+|||+||+
T Consensus 142 ~~Ei~~q~----~~~~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~----------------------------- 188 (244)
T cd00640 142 GLEILEQL----GGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEP----------------------------- 188 (244)
T ss_pred HHHHHHHc----CCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEee-----------------------------
Confidence 99987776 33 59999999999999999999998 689999999984
Q ss_pred ccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHHHHHHhhh
Q 013596 360 LQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVNCLHKL 436 (439)
Q Consensus 360 ~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~Aal~~~~ 436 (439)
+++.|+|+|+++++++|+ ++++++++|+++++++++....
T Consensus 189 ------------------------------------~~~~v~d~~~~~a~~~l~-~~~gi~~~pssa~~~aa~~~~~ 228 (244)
T cd00640 189 ------------------------------------EVVTVSDEEALEAIRLLA-REEGILVEPSSAAALAAALKLA 228 (244)
T ss_pred ------------------------------------eEEEECHHHHHHHHHHHH-HHcCceECHhHHHHHHHHHHHH
Confidence 677899999999999985 4459999999999999987653
No 73
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=6e-39 Score=323.54 Aligned_cols=279 Identities=23% Similarity=0.224 Sum_probs=202.5
Q ss_pred HhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCC--CchhhhHHHHHHHHHHHhCCCeeEEecC--cchHHHH
Q 013596 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHT--GAHKINNAVGQALLAKRLGKTRIIAETG--AGQHGVA 191 (439)
Q Consensus 116 i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npT--GSfK~Rga~~~~~~a~~~g~~~~Vv~aS--sGNhG~A 191 (439)
+...++ +|||++++.|++.+ +.+||+|+|++||+ ||||+|++.+++..+++.|.+. |+++| +||||+|
T Consensus 9 ~~~~~~-~TPl~~~~~l~~~~------g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~~~-vvt~g~s~gN~g~a 80 (331)
T PRK03910 9 LELAGL-PTPLEPLPRLSAAL------GPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGADT-LITAGAIQSNHARQ 80 (331)
T ss_pred ccccCC-CCCceEhhhhhHhh------CCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCCCE-EEEcCcchhHHHHH
Confidence 344554 79999999999876 78999999999997 5999999999999998888765 45664 4899999
Q ss_pred HHHHHHHcCCeEEEEecCCchhhH-----HHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCC
Q 013596 192 TATVCARFGLQCIVYMGAQDMERQ-----ALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAG 266 (439)
Q Consensus 192 lA~aa~~~Gi~~~IvmP~~~~~~~-----~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~ 266 (439)
+|++|+.+|++|+||||+..+... ..|+..|+.|||+|+.++.. ++..++.....+.+.++....+++..++.|
T Consensus 81 lA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~-~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~ 159 (331)
T PRK03910 81 TAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAG-TDMDAQLEELAEELRAQGRRPYVIPVGGSN 159 (331)
T ss_pred HHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCcc-chHHHHHHHHHHHHHHcCCceEEECCCCCC
Confidence 999999999999999998653211 25678899999999999753 233333333333333322223334444433
Q ss_pred CCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEEEecCCCCCCchhhhhhhh
Q 013596 267 PHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLS 345 (439)
Q Consensus 267 ~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVep~~s~~~~~~~~~sl~ 345 (439)
+.. ..+|.++|.|+.+|+.+ .+..||+||+|+|+||+++|++.+++ .+|+++||||||+++. .+..+
T Consensus 160 ~~~-----~~g~~~~~~Ei~~q~~~-~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~----~~~~~-- 227 (331)
T PRK03910 160 ALG-----ALGYVACALEIAQQLAE-GGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSA----AEQEP-- 227 (331)
T ss_pred chh-----HHHHHHHHHHHHHHHHh-cCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCH----HHHHH--
Confidence 322 25777899998887632 22259999999999999999999998 6899999999999862 12111
Q ss_pred cCCeeeeccchhhhccccCCCccCCcccccccCCCC-CCCchhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchh
Q 013596 346 KGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPG-VGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHG 424 (439)
Q Consensus 346 ~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~-vg~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epa 424 (439)
.. .....+++++++.+. +.+....+.+.+.++++.|+|+|+++++++|+ +++++++||+
T Consensus 228 ----~~---------------~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~-~~~gi~~ep~ 287 (331)
T PRK03910 228 ----KV---------------AKLAQATAELLGLPTEIPRADIRLWDDYVGPGYGVPTDEMLEAVKLLA-RTEGILLDPV 287 (331)
T ss_pred ----HH---------------HHHHHHHHHHcCCCccCCcccEEEEcCCCCCCCCCCCHHHHHHHHHHH-HHcCCccccc
Confidence 00 011345666665431 22222224445678999999999999999985 4459999996
Q ss_pred -HHHHHHHHHhh
Q 013596 425 -GLWLLVNCLHK 435 (439)
Q Consensus 425 -gA~a~Aal~~~ 435 (439)
++.++++++..
T Consensus 288 ysg~~~aa~~~~ 299 (331)
T PRK03910 288 YTGKAMAGLIDL 299 (331)
T ss_pred cHHHHHHHHHHH
Confidence 99999998875
No 74
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=7.5e-39 Score=320.04 Aligned_cols=272 Identities=19% Similarity=0.183 Sum_probs=197.2
Q ss_pred hcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCC--CchhhhHHHHHHHHHHHhCCCeeEEec--CcchHHHHHHH
Q 013596 119 YVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHT--GAHKINNAVGQALLAKRLGKTRIIAET--GAGQHGVATAT 194 (439)
Q Consensus 119 ~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npT--GSfK~Rga~~~~~~a~~~g~~~~Vv~a--SsGNhG~AlA~ 194 (439)
+++++|||+++++|++.. +.+||+|+|++||| ||||+|++.+++..+++.|.+ .|+++ |+||||+|+|+
T Consensus 3 ~~~~~TPl~~~~~l~~~~------g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~~-~vv~~g~ssGN~g~alA~ 75 (311)
T TIGR01275 3 LIPWPTPIQYLPRISREI------GAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGAD-TVITVGAIQSNHARATAL 75 (311)
T ss_pred CCCCCCcceechhhhhhc------CCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCCC-EEEEcCCchhHHHHHHHH
Confidence 456899999999998876 78999999999998 999999999999999888875 56677 56999999999
Q ss_pred HHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHH---HHHHccCCceEEecccCCCCCcc
Q 013596 195 VCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIR---DWVTNVETTHYILGSVAGPHPYP 271 (439)
Q Consensus 195 aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~---~~~~~~~~~~y~~~s~~~~~p~~ 271 (439)
+|+.+|++|+||||.... +..|...|+.|||+|+.++.. ++.+..+.+.+ +..++....+++++++.|+ +.
T Consensus 76 ~a~~~G~~~~ivvp~~~~--~~~~~~~~~~~Ga~v~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~ 149 (311)
T TIGR01275 76 AAKKLGLDAVLVLREKEE--LNGNLLLDKLMGAETRVYSAE--EYFEIMKYAEELAEELEKEGRKPYVIPVGGSNS--LG 149 (311)
T ss_pred HHHHhCCceEEEecCCcc--CCCCHHHHHHcCCEEEEECch--hhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcH--HH
Confidence 999999999999998531 234566689999999999742 23333322222 1111111234455665433 22
Q ss_pred hhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEEEecCCCCCCchhhhhhhhcCCee
Q 013596 272 MMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVG 350 (439)
Q Consensus 272 ~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVep~~s~~~~~~~~~sl~~G~~~ 350 (439)
..+|+++|+|+.+|+.. . ..||+||+|+|+||+++|++.+++ .+|+++|||||++.++. .....+
T Consensus 150 ---~~g~~~~~~EI~~q~~~-~-~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~~~---~~~~~~------ 215 (311)
T TIGR01275 150 ---TLGYVEAVLEIATQLES-E-VKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRFGE---DMTDKF------ 215 (311)
T ss_pred ---HHHHHHHHHHHHHHHhc-C-CCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEecccHH---HHHHHH------
Confidence 25777788888777621 1 269999999999999999999998 68899999999876521 011110
Q ss_pred eeccchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchh-HHHHH
Q 013596 351 VLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHG-GLWLL 429 (439)
Q Consensus 351 ~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epa-gA~a~ 429 (439)
....+++++|++.+. -..+..+.+ ..+..+.|+|+|+++++++|+ +++++++||+ +++++
T Consensus 216 ----------------~~~~~~~~~g~~~~~-~~~~~~~~~-~~~~~~~v~d~e~~~~~~~la-~~~gi~vep~~sg~~~ 276 (311)
T TIGR01275 216 ----------------VNLVKEIAEGLEVKA-SEVIPELDD-YSGPGYGKPTSEVAEIVKKVA-SREGIILDPVYTGKAF 276 (311)
T ss_pred ----------------HHHHHHHHHHhCCCC-CCCEEEECC-cccCcCCCCCHHHHHHHHHHH-HHhCCccCcchHHHHH
Confidence 011456777775332 112223333 457789999999999999995 4459999994 99999
Q ss_pred HHHHhhh
Q 013596 430 VNCLHKL 436 (439)
Q Consensus 430 Aal~~~~ 436 (439)
++++..+
T Consensus 277 aa~~~~~ 283 (311)
T TIGR01275 277 YGLIDLI 283 (311)
T ss_pred HHHHHHH
Confidence 9887653
No 75
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=7.5e-38 Score=316.27 Aligned_cols=279 Identities=21% Similarity=0.279 Sum_probs=204.6
Q ss_pred hcCCCCcccchhhhhhHhcCCCCCC--CeEEEEeCCCCCC---CchhhhHHHHHHHHHHHhCCCeeEEec--CcchHHHH
Q 013596 119 YVGRETPLYFAERLTEHYRRPNGGG--PHIYLKREDLNHT---GAHKINNAVGQALLAKRLGKTRIIAET--GAGQHGVA 191 (439)
Q Consensus 119 ~ig~~TPL~~~~~l~~~l~~~~~~g--~~IylK~E~~npT---GSfK~Rga~~~~~~a~~~g~~~~Vv~a--SsGNhG~A 191 (439)
.+| +|||++++++++.+ + .+||+|+|++||+ ||||||.+..++..+.+.|.. +|+++ |+||||+|
T Consensus 12 ~~g-~TPL~~~~~l~~~~------g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~~-~vvs~G~s~GN~g~a 83 (337)
T PRK12390 12 TFG-PTPIHPLKRLSAHL------GGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGAD-TLVSIGGVQSNHTRQ 83 (337)
T ss_pred CCC-CCcceeHHHHHHHh------CCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCCC-EEEEeCCCccHHHHH
Confidence 355 79999999999876 5 7999999999987 778999999999999988885 45565 78999999
Q ss_pred HHHHHHHcCCeEEEEecCCch-----hhHHHHHHHHHHcCCEEEEEcCCC-CCHHHHHHHHHHHHHHccCCceEEecccC
Q 013596 192 TATVCARFGLQCIVYMGAQDM-----ERQALNVFRMRLLGAEVRAVHSGT-ATLKDATSEAIRDWVTNVETTHYILGSVA 265 (439)
Q Consensus 192 lA~aa~~~Gi~~~IvmP~~~~-----~~~~~k~~~m~~~GA~Vv~v~~~~-~~~~da~~~a~~~~~~~~~~~~y~~~s~~ 265 (439)
+|++|+++|++|+||||...+ ..+..|+.+|+.|||+|+.++... ..++++...+.+.+ ++..+..|.+....
T Consensus 84 lA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 162 (337)
T PRK12390 84 VAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDV-RAAGGKPYAIPAGA 162 (337)
T ss_pred HHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHH-HhCCCceEEeCCcC
Confidence 999999999999999866321 112347778999999999997632 12445555554443 23233456554444
Q ss_pred CCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEEEecCCCCCCchhhhhhh
Q 013596 266 GPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATL 344 (439)
Q Consensus 266 ~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVep~~s~~~~~~~~~sl 344 (439)
+.||+.. .++.++|+|+.+|+ ++++..+|+||+|+|+||+++|++.+++ .+|++||||||++++.. +...
T Consensus 163 ~~~~~~~---~G~~~~a~Ei~~q~-~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~----~~~~- 233 (337)
T PRK12390 163 SDHPLGG---LGFVGFAEEVRAQE-AELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPE----QTRA- 233 (337)
T ss_pred CCCCccc---HHHHHHHHHHHHHH-HhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchH----HHHH-
Confidence 4556532 46667799998886 3455579999999999999999999998 68999999999998731 1111
Q ss_pred hcCCeeeeccchhhhccccCCCccCCcccccccCCCC-CCCchhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEch
Q 013596 345 SKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPG-VGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRH 423 (439)
Q Consensus 345 ~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~-vg~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~ep 423 (439)
+.. ...++++++++.+. +.+....+.+.+.++.+.|+|+|+++++++++ +++++++||
T Consensus 234 ---~~~-----------------~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~vsd~e~~~a~~~la-~~~gi~~ep 292 (337)
T PRK12390 234 ---QVL-----------------RIARNTAELVELGRDITEDDVVLDERYAGPEYGLPNEGTLEAIRLCA-RLEGMLTDP 292 (337)
T ss_pred ---HHH-----------------HHHHHHHHHhCCCCCCChhhEEEecccccCCCCCCCHHHHHHHHHHH-HhcCccccc
Confidence 110 01345556665322 11111124444679999999999999999885 445999999
Q ss_pred h-HHHHHHHHHhhh
Q 013596 424 G-GLWLLVNCLHKL 436 (439)
Q Consensus 424 a-gA~a~Aal~~~~ 436 (439)
+ ++.++++++...
T Consensus 293 ~ysg~~~aa~~~~~ 306 (337)
T PRK12390 293 VYEGKSMHGMIDLV 306 (337)
T ss_pred cHHHHHHHHHHHHH
Confidence 6 999999887654
No 76
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=5e-37 Score=310.27 Aligned_cols=279 Identities=19% Similarity=0.234 Sum_probs=203.1
Q ss_pred CCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCC---CchhhhHHHHHHHHHHHhCCCeeEEec--CcchHHHHHHHHH
Q 013596 122 RETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHT---GAHKINNAVGQALLAKRLGKTRIIAET--GAGQHGVATATVC 196 (439)
Q Consensus 122 ~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npT---GSfK~Rga~~~~~~a~~~g~~~~Vv~a--SsGNhG~AlA~aa 196 (439)
.+|||+++++|++.++ .+.+||+|+|++||+ ||||+|.+.+++..+++.|.. .|+++ ++||||+|+|++|
T Consensus 13 g~TPl~~~~~l~~~~g----~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~~-~vvs~ggs~gN~g~alA~~a 87 (337)
T TIGR01274 13 GPSPIHPLPRLSQHLG----GKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGCT-TLVSIGGIQSNQTRQVAAVA 87 (337)
T ss_pred CCCCceEhHhhHHhcC----CCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCCC-EEEECCCCcchHHHHHHHHH
Confidence 3799999999998761 125999999999986 777999999999999998886 45555 6699999999999
Q ss_pred HHcCCeEEEEecCCch-h----hHHHHHHHHHHcCCEEEEEcCCCC-CHHHHHHHHHHHHHHccCCceEEecccCCCCCc
Q 013596 197 ARFGLQCIVYMGAQDM-E----RQALNVFRMRLLGAEVRAVHSGTA-TLKDATSEAIRDWVTNVETTHYILGSVAGPHPY 270 (439)
Q Consensus 197 ~~~Gi~~~IvmP~~~~-~----~~~~k~~~m~~~GA~Vv~v~~~~~-~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~ 270 (439)
+++|++|+||||+... . .++.|+.+|+.|||+|+.++.... ...++...+.+.+.++ .+..|++....+.||+
T Consensus 88 ~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~-~~~~~~i~~~~~~~~~ 166 (337)
T TIGR01274 88 AHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGA-GGKPYPIPAGCSDHPL 166 (337)
T ss_pred HHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhc-CCceEEeCCCCCCCcc
Confidence 9999999999998421 1 125689999999999999875321 2334555555543332 2333555444445665
Q ss_pred chhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEEEecCCCCCCchhhhhhhhcCCe
Q 013596 271 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEV 349 (439)
Q Consensus 271 ~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVep~~s~~~~~~~~~sl~~G~~ 349 (439)
.. .++.++++|+.+|+. +++..||+||+|+|+||+++|++.+++ .+|++||||||++++.. + ..+..
T Consensus 167 ~~---~G~~~~~~Ei~eq~~-~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~----~----~~~~~ 234 (337)
T TIGR01274 167 GG---LGFVGFAFEVREQEG-ELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPE----Q----TRAQI 234 (337)
T ss_pred ch---hHHHHHHHHHHHHHH-hcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHH----H----HHHHH
Confidence 32 466677899888863 344479999999999999999999998 67899999999999731 1 11100
Q ss_pred eeeccchhhhccccCCCccCCcccccccCCCCC-CCchhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchh-HHH
Q 013596 350 GVLHGALSYLLQNEDGQIIEPHSISAGLDYPGV-GPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHG-GLW 427 (439)
Q Consensus 350 ~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~v-g~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epa-gA~ 427 (439)
.....+++++++.+.. .+....+...+.++.+.|+|+|+++++++|+. ++++++||. ++.
T Consensus 235 -----------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~-~eGi~~ep~ytg~ 296 (337)
T TIGR01274 235 -----------------LRIARNTAEKIGLERDITEDDVVLDTRFAYPEYGVPNEGTLEAIRLCAK-MEGVLTDPVYEGK 296 (337)
T ss_pred -----------------HHHHHHHHHHhCCCCCcCccceEEeccccCCCcCCCCHHHHHHHHHHHH-hcCCccCcchHHH
Confidence 0113456666653221 11112344445689999999999999998854 459999996 889
Q ss_pred HHHHHHhhh
Q 013596 428 LLVNCLHKL 436 (439)
Q Consensus 428 a~Aal~~~~ 436 (439)
++++++...
T Consensus 297 ~~aa~~~~~ 305 (337)
T TIGR01274 297 SMHGMIEMI 305 (337)
T ss_pred HHHHHHHHH
Confidence 999887764
No 77
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=4.7e-37 Score=306.67 Aligned_cols=274 Identities=25% Similarity=0.321 Sum_probs=195.7
Q ss_pred CcccchhhhhhHhcCCCCCCCeEEEEeCCCCCC---CchhhhHHHHHHHHHHHhCCCeeEEec--CcchHHHHHHHHHHH
Q 013596 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHT---GAHKINNAVGQALLAKRLGKTRIIAET--GAGQHGVATATVCAR 198 (439)
Q Consensus 124 TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npT---GSfK~Rga~~~~~~a~~~g~~~~Vv~a--SsGNhG~AlA~aa~~ 198 (439)
|||+++++|++.++ .+.+||+|+|++||+ ||||+|++.+++..+.+.|.+ .|+++ |+||||.|+|++|+.
T Consensus 1 TPl~~~~~l~~~~g----~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~~-~vv~~ggs~GN~g~alA~~a~~ 75 (307)
T cd06449 1 TPIQYLPRLSEHLG----GKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGAD-TLVTVGGIQSNHTRQVAAVAAK 75 (307)
T ss_pred CcccchhHHHHhhC----CCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCCC-EEEECCCchhHHHHHHHHHHHH
Confidence 89999999998761 247999999999999 566999999999999887875 55676 689999999999999
Q ss_pred cCCeEEEEecCCchh-----hHHHHHHHHHHcCCEEEEEcCCCC-CHHHHHHHHHHHHHHccCCceEE-ecccCCCCCcc
Q 013596 199 FGLQCIVYMGAQDME-----RQALNVFRMRLLGAEVRAVHSGTA-TLKDATSEAIRDWVTNVETTHYI-LGSVAGPHPYP 271 (439)
Q Consensus 199 ~Gi~~~IvmP~~~~~-----~~~~k~~~m~~~GA~Vv~v~~~~~-~~~da~~~a~~~~~~~~~~~~y~-~~s~~~~~p~~ 271 (439)
+|++|+||||...+. .+..|+.+|+.+||+|+.++.... ...++..++.+.+.++ ....|+ .++.. .||..
T Consensus 76 ~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~ 153 (307)
T cd06449 76 LGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAK-GGKPYVIPAGGS-EHPLG 153 (307)
T ss_pred cCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHc-CCceEEecCCCC-CCccc
Confidence 999999999986431 124688899999999999975321 1223333444433332 223344 44432 23332
Q ss_pred hhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEEEecCCCCCCchhhhhhhhcCCee
Q 013596 272 MMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVG 350 (439)
Q Consensus 272 ~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVep~~s~~~~~~~~~sl~~G~~~ 350 (439)
..+|.+++.|+.+|+.+ .+..||+||+|+|+||+++|++.+++ .+|.+|||+||++++. .+..+ +..
T Consensus 154 ---~~G~~t~~~Ei~~q~~~-~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~----~~~~~----~~~ 221 (307)
T cd06449 154 ---GLGYVGFVLEIAQQEEE-LGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKP----EKTKA----QVL 221 (307)
T ss_pred ---HHHHHHHHHHHHHHHHh-cCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCch----HHHHH----HHH
Confidence 26889999999988743 23369999999999999999999998 6889999999999873 12111 000
Q ss_pred eeccchhhhccccCCCccCCcccc-cccCCCCCCCchhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEch-hHHHH
Q 013596 351 VLHGALSYLLQNEDGQIIEPHSIS-AGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRH-GGLWL 428 (439)
Q Consensus 351 ~~~g~~~~~~~~~~g~~~~~~tia-~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~ep-agA~a 428 (439)
. .. .++++ .|+. .+.....+.+.+.++++.|+|+|+++++++++.+ .++++|| +++.+
T Consensus 222 ~---------------~~-~~~~~~~g~~---~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~-~Gi~~ep~ytg~~ 281 (307)
T cd06449 222 R---------------IA-QAKLAEEGLE---VKEEDVVLDDDYAAPEYGIPNDETIEAIKLCARL-EGIITDPVYEGKS 281 (307)
T ss_pred H---------------HH-HHHHHHcCCC---CCcccEEEecCcccCCCCCCCHHHHHHHHHHHHH-hCCccccchHHHH
Confidence 0 00 12222 2221 1111122333456889999999999999998644 4999999 69999
Q ss_pred HHHHHhhh
Q 013596 429 LVNCLHKL 436 (439)
Q Consensus 429 ~Aal~~~~ 436 (439)
++++....
T Consensus 282 ~aa~~~~~ 289 (307)
T cd06449 282 MQGMIDLV 289 (307)
T ss_pred HHHHHHHH
Confidence 99887654
No 78
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.5e-37 Score=311.88 Aligned_cols=312 Identities=24% Similarity=0.301 Sum_probs=231.0
Q ss_pred CCccCCCCccccccccc-cHHHHHHH-----------HHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhhhHhcCCCC
Q 013596 74 GRFGRFGGKFVPETLMY-ALSELESA-----------LHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNG 141 (439)
Q Consensus 74 ~~~g~~GG~~vPe~l~~-~l~~l~~a-----------~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~ 141 (439)
..+...||+|+|+.++. +++++.+. |.+++...+.+. ..+.. | .||+++++++...++.
T Consensus 21 ~~~c~~cGl~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~---~~l~e--g-~tp~~~~~~~~~~l~~--- 91 (411)
T COG0498 21 QGLCPDCGLFLPAEYPYFSLEEIDKLLGLSYPELAWRYLELLPVGEIPA---VSLGE--G-GTPLYKAPALAAPLGV--- 91 (411)
T ss_pred hCcCCcCCcccccccCccchhhhhhhhcccccchHHHHHHHCCCCCcch---hhhhh--c-cCccccCcccchhhcc---
Confidence 56788999999998854 33333332 222222111111 01111 2 4999999888887721
Q ss_pred CCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHH
Q 013596 142 GGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFR 221 (439)
Q Consensus 142 ~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~ 221 (439)
.+.++|+|.|++|||||||||++...+..+++.+. .+|+++||||+|.|+|.++++.|++|+|++|++.+ ...|+.+
T Consensus 92 ~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~-~~I~~ASSGnTgAs~aaya~rag~~v~Vl~P~g~v--s~~k~~q 168 (411)
T COG0498 92 LNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA-KTILCASSGNTGASAAAYAARAGLKVFVLYPKGKV--SPGKLAQ 168 (411)
T ss_pred CCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC-CEEEEeCCchHHHHHHHHhccCCCeEEEEecCCCC--CHHHHHH
Confidence 13469999999999999999999999999999886 57889999999999999999999999999999844 4678889
Q ss_pred HHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEE
Q 013596 222 MRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLI 301 (439)
Q Consensus 222 m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vv 301 (439)
|..+|++++.+++ +|+||++.+.+. .++ ..+ ++..|++||++. ++|.++++|++.|+-. ..||+|+
T Consensus 169 ~~~~ga~~i~v~G---~fDda~~~vk~~-~~~--~~~--~~~~nsiNp~rl---egq~t~~fe~~~ql~~---~~p~~v~ 234 (411)
T COG0498 169 MLTLGAHVIAVDG---NFDDAQELVKEA-ANR--EGL--LSAVNSINPYRL---EGQKTYAFEIAEQLGW---KAPDHVV 234 (411)
T ss_pred HHhcCCEEEEEcC---cHHHHHHHHHHH-Hhh--CCc--eeeccccCHHHh---hhhhhhHhHHHHHhCC---CCCCeEE
Confidence 9999999999974 689998877654 331 222 566888899986 7888999999888722 4799999
Q ss_pred EcCCchHHHHHHHHHHhc-CC------CcEEEEEecCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCcccc
Q 013596 302 ACVGGGSNAMGLFHEFVN-DK------DVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSIS 374 (439)
Q Consensus 302 vpvG~GG~~aGi~~~~~~-~p------~vrvigVep~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia 374 (439)
||||+||++.|++.+|+. .| -+++.+||+++.. .....++.++ ..+.|++
T Consensus 235 vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~----p~~~~~~~~~-------------------~~~~T~a 291 (411)
T COG0498 235 VPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFS----PGVYAWKEGR-------------------ETPETIA 291 (411)
T ss_pred EeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhcc----chhhhccccc-------------------ccccccc
Confidence 999999999999999973 33 3577777777752 1222222221 2478999
Q ss_pred cccCCCCCCCchhh----hhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHHHHHHhhhh
Q 013596 375 AGLDYPGVGPEHSF----LKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVNCLHKLI 437 (439)
Q Consensus 375 ~GL~~~~vg~~~~~----l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~Aal~~~~~ 437 (439)
++|+... ..++.. +++. .+.++.|||+|+++++++++.+ .|+++|||+|+++|++.+.+.
T Consensus 292 ~am~I~~-p~n~~r~l~a~~es-~g~~~~vsdeEi~~a~~~l~~~-eG~~~eP~sA~ava~l~k~~~ 355 (411)
T COG0498 292 PAMDIGN-PSNWERALFALRES-GGLAVAVSDEEILEAIKLLAER-EGILIEPHSAVAVAALLKLRE 355 (411)
T ss_pred cccccCC-CCCHHHHHHHHHhc-CCceEEeCHHHHHHHHHHHHHh-CCcccCccHHHHHHHHHHHHH
Confidence 9999432 223322 2222 3569999999999999988644 599999999999999887654
No 79
>PRK09225 threonine synthase; Validated
Probab=100.00 E-value=1.3e-36 Score=316.49 Aligned_cols=327 Identities=14% Similarity=0.070 Sum_probs=235.4
Q ss_pred CCccCCCCcccccccccc-HHHHHHHHHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhhh-Hhc-CCCC-------CC
Q 013596 74 GRFGRFGGKFVPETLMYA-LSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTE-HYR-RPNG-------GG 143 (439)
Q Consensus 74 ~~~g~~GG~~vPe~l~~~-l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~~-~l~-~~~~-------~g 143 (439)
.-++..||+|||+.++.- .++|+. ..+.+|++....+++.|++...|--.+.++.+ .+. +.+. .+
T Consensus 21 ~Gla~DGGLyvP~~~P~l~~~~~~~-----~~~~sy~~~a~~il~~f~~~~i~~~~l~~~i~~ay~~F~~~~~~pl~~l~ 95 (462)
T PRK09225 21 QGLAPDGGLYVPEELPKLSAEEIDA-----LLGLSYAELAFEILSAFVGDDIPEDDLKAIIARAYTTFDHPAIAPLVQLD 95 (462)
T ss_pred cCCCCCCceEeCcccCCCCHHHHHH-----HhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCCcCccceEEeC
Confidence 346789999999998752 334433 34557777777777777755555555554433 221 0000 03
Q ss_pred CeEEEEeCCCCCCCchhhhHHHH---HHHHHHHhCCCeeEEecCcchHHHHH-HHHHHHcCCeEEEEecCCchhhHHHHH
Q 013596 144 PHIYLKREDLNHTGAHKINNAVG---QALLAKRLGKTRIIAETGAGQHGVAT-ATVCARFGLQCIVYMGAQDMERQALNV 219 (439)
Q Consensus 144 ~~IylK~E~~npTGSfK~Rga~~---~~~~a~~~g~~~~Vv~aSsGNhG~Al-A~aa~~~Gi~~~IvmP~~~~~~~~~k~ 219 (439)
.++|+...+++||||||||++.. .+..+.+ +...+|+++||||+|.|+ |.++.+.|++|+|++|++.. +..+.
T Consensus 96 ~~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~~~~Il~ATSGdtG~Aa~aaf~~~~gi~~~V~~P~g~v--s~~q~ 172 (462)
T PRK09225 96 DNLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GEKITILGATSGDTGSAAAEAFRGKPNVRVVILYPKGKV--SPVQE 172 (462)
T ss_pred CCceeHhhccCCccchhhhHHHHHHHHHHHHHh-CCCcEEEEcCCCcHHHHHHHHHhCcCCCEEEEEEcCCCC--CHHHH
Confidence 46899999999999999999977 5556655 556688999999999999 67788899999999999633 35677
Q ss_pred HHHHHc-CCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCC
Q 013596 220 FRMRLL-GAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPD 298 (439)
Q Consensus 220 ~~m~~~-GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d 298 (439)
.+|..+ |++|+.+.. .++++||++.+++.+.++.....+-+.+.|++||++. .+|.++.+|++.|+.+.. +.||
T Consensus 173 ~Qm~t~~g~nv~vi~V-~G~fDD~q~~vk~~~~d~~~~~~~~l~saNSiN~~Ri---~gQ~~yyfea~~ql~~~~-~~p~ 247 (462)
T PRK09225 173 KQMTTLQGDNIHVVAV-EGNFDDCQALVKAAFNDEELKEKLKLSSANSINIGRL---LAQIVYYFYAYLQLGIEA-GEKV 247 (462)
T ss_pred HHHHhhcCCCeEEEEe-CCCHHHHHHHHHHHhhchhhhhcCceEEEeccCHHHH---HHHHHHHHHHHHHhcccc-CCCC
Confidence 789999 998854443 2579999887766543322222344566777899987 566666699998874322 2589
Q ss_pred EEEEcCCchHHHHHHHHHHh-cCCCcEEEEEecCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCccccccc
Q 013596 299 VLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGL 377 (439)
Q Consensus 299 ~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVep~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL 377 (439)
.|+||+|+||++.|++.+.+ ..|..|+|++++.+ +.+.+.+..|.+.. ...++|++++|
T Consensus 248 ~~vVPtGnfgni~a~~~Ak~mGlpi~kli~A~n~n-----~~l~~~~~~G~y~~---------------~~~~~T~s~am 307 (462)
T PRK09225 248 NFSVPSGNFGNILAGYYAKKMGLPIKRLIVATNEN-----DVLTRFLKTGVYDP---------------RPTVATLSPAM 307 (462)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCcceEEEEecCC-----hHHHHHHHcCCCcc---------------CCCCCCcCchh
Confidence 99999999999999999876 67888999998665 46778888887542 12468999999
Q ss_pred CCCCCCCchhh------------hhhc------CCc---------------EEEEeCHHHHHHHHHHHHHcCCceEEchh
Q 013596 378 DYPGVGPEHSF------------LKDE------GRA---------------EYYNVTDDEALEGMKLYLILPFKLLSRHG 424 (439)
Q Consensus 378 ~~~~vg~~~~~------------l~~~------~~~---------------~~v~VsD~ea~~A~~~L~~~~~~l~~epa 424 (439)
+.+. ..++++ +.+. ... ..+.|+|+|+++++++++ +++|+++|||
T Consensus 308 dI~~-psn~eR~l~~~~~~~~~~v~~~m~~l~~~gg~~~~~~~~~~~~~~f~a~~vsD~ei~~ai~~~~-~~~G~~~dPh 385 (462)
T PRK09225 308 DISV-SSNFERLLFDLLGRDAAAVEELMEDLEEKGEYDLSDEELAALREDFSAGSVSDEETLATIREVY-EEYGYLIDPH 385 (462)
T ss_pred hcCC-CCcHHHHHHHhcCCcHHHHHHHHHHHHHcCCcccCHHHHHHhhhcceEEEECHHHHHHHHHHHH-HhCCEEECch
Confidence 9643 333333 2110 111 679999999999999884 5569999999
Q ss_pred HHHHHHHHHhh
Q 013596 425 GLWLLVNCLHK 435 (439)
Q Consensus 425 gA~a~Aal~~~ 435 (439)
+|++++++...
T Consensus 386 tAva~aa~~~~ 396 (462)
T PRK09225 386 TAVAYKAAREY 396 (462)
T ss_pred HHHHHHHHHHh
Confidence 99999998553
No 80
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=7.4e-38 Score=304.85 Aligned_cols=269 Identities=25% Similarity=0.310 Sum_probs=209.7
Q ss_pred HhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhC----CCeeEEecCcchHHHH
Q 013596 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLG----KTRIIAETGAGQHGVA 191 (439)
Q Consensus 116 i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g----~~~~Vv~aSsGNhG~A 191 (439)
..+.+| .|||+.++++..-+ .++||+|+|.+||+||.|||-++.++..|++.| .+.++++++|||+|.+
T Consensus 46 ~~~liG-~TPlv~ln~i~~g~------~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGig 118 (362)
T KOG1252|consen 46 VRDLIG-NTPLVKLNKIAGGC------VARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIG 118 (362)
T ss_pred HHHHhC-CCceEEeccccCCc------cceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHH
Confidence 455678 59999999986543 799999999999999999999999999999876 3467899999999999
Q ss_pred HHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHH---HHHHHHHHHHHccCCceEEecccCCCC
Q 013596 192 TATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKD---ATSEAIRDWVTNVETTHYILGSVAGPH 268 (439)
Q Consensus 192 lA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~d---a~~~a~~~~~~~~~~~~y~~~s~~~~~ 268 (439)
+|++|+..|++|+++||+.- +..|+..|+.|||+|+.++.. ..++- ++..+.+ +..+ ....|++.|+.|+.
T Consensus 119 LA~~~a~~Gyk~i~tmP~~m---s~Ek~~~l~a~Gaeii~tp~a-~~~~~~e~ai~~a~~-l~~~-~pna~~l~Qf~np~ 192 (362)
T KOG1252|consen 119 LAYMAALRGYKCIITMPEKM---SKEKRILLRALGAEIILTPPA-AGMKGPESAIGKAEE-LLNK-TPNAYILDQFHNPG 192 (362)
T ss_pred HHHHHHHcCceEEEEechhh---hHHHHHHHHHcCCEEEecChH-HccCChHHHHHHHHH-HHHh-CCChHHHHHhcCCC
Confidence 99999999999999999953 467888999999999999863 23333 5544433 3443 44678899998887
Q ss_pred CcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEEEecCCCCCCchhhhhhhhcC
Q 013596 269 PYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKG 347 (439)
Q Consensus 269 p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVep~~s~~~~~~~~~sl~~G 347 (439)
+. ..|| ..+..||++|+.+++|.||.++|+|||++|+..+++ .+|++||++|||..|.. +..+
T Consensus 193 Np-----~~hy---~ttg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~--------~~~~ 256 (362)
T KOG1252|consen 193 NP-----LAHY---ETTGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIV--------LSGG 256 (362)
T ss_pred Cc-----cccc---ccccHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCccee--------ccCC
Confidence 65 2444 344445566667789999999999999999999998 79999999999999842 2222
Q ss_pred CeeeeccchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchhHHH
Q 013596 348 EVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGLW 427 (439)
Q Consensus 348 ~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~ 427 (439)
.+++ ..|-| .|++|. ..|. .+....+|+++.++++|+..+.|+|+.++ |+++..|+.+
T Consensus 257 ~~g~-----------------~~~~I-~GIGyg-~~p~--~ld~~~vd~~~~~~~d~A~~~Ar~La~ee-Gll~G~SSGa 314 (362)
T KOG1252|consen 257 KPGP-----------------TFHKI-QGIGYG-FIPT--TLDTKLVDEVLKVSSDEAIEMARRLALEE-GLLVGISSGA 314 (362)
T ss_pred CCCC-----------------Cccce-eccccC-cCcc--ccchHHHHHHHHhCCHHHHHHHHHHHHhh-CeeecccchH
Confidence 2221 12444 366653 3333 34445568888999999999999997766 9999999999
Q ss_pred HHHHHHhh
Q 013596 428 LLVNCLHK 435 (439)
Q Consensus 428 a~Aal~~~ 435 (439)
+++|+++.
T Consensus 315 n~~aAl~~ 322 (362)
T KOG1252|consen 315 NVAAALKL 322 (362)
T ss_pred HHHHHHHH
Confidence 98888764
No 81
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=100.00 E-value=1e-35 Score=309.98 Aligned_cols=329 Identities=16% Similarity=0.066 Sum_probs=236.0
Q ss_pred CCccCCCCcccccccccc-HHHHHHHHHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhhh-Hhc-CCCC-------CC
Q 013596 74 GRFGRFGGKFVPETLMYA-LSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTE-HYR-RPNG-------GG 143 (439)
Q Consensus 74 ~~~g~~GG~~vPe~l~~~-l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~~-~l~-~~~~-------~g 143 (439)
.-++..||+|||+.++.- .++|.. ..+.+|++....+++.|+|...|--.+..+.+ .+. +.+. .+
T Consensus 20 ~Gla~DGGLyvP~~~P~~~~~~~~~-----~~~~sy~~~a~~vl~~f~~~~i~~~~L~~~i~~ay~~F~~~~~~pl~~l~ 94 (460)
T cd01560 20 SGLAPDGGLYVPEELPKLSAEEIAS-----WSGLSYQELAFEVLSLFIGDEIPEDDLKSLIDRAYSFFRHPDIAPLVQLG 94 (460)
T ss_pred cCCCCCCceecCcccCCCCHHHHHH-----HhCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCccceEEeC
Confidence 346789999999998752 333433 35678888888888888865555555555443 221 0000 03
Q ss_pred CeEEEEeCCCCCCCchhhhHHHHH---HHHHHHh-CCCeeEEecCcchHHHHH-HHHHHHcCCeEEEEecCCchhhHHHH
Q 013596 144 PHIYLKREDLNHTGAHKINNAVGQ---ALLAKRL-GKTRIIAETGAGQHGVAT-ATVCARFGLQCIVYMGAQDMERQALN 218 (439)
Q Consensus 144 ~~IylK~E~~npTGSfK~Rga~~~---~~~a~~~-g~~~~Vv~aSsGNhG~Al-A~aa~~~Gi~~~IvmP~~~~~~~~~k 218 (439)
.++|++.++++||||||||++..+ +..+.+. .....|+++||||+|.|+ |..+.+.|++|+|++|++.. +..+
T Consensus 95 ~~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~~~~~~Il~ATSGdTG~Aa~aaf~~~~gi~v~Vl~P~g~v--s~~Q 172 (460)
T cd01560 95 DNLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRRNERITILVATSGDTGSAAIEGFRGKPNVDVVVLYPKGGV--SPIQ 172 (460)
T ss_pred CCcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHhCcCCCEEEEEEcCCCC--CHHH
Confidence 478999999999999999999765 4444433 345678899999999995 77788899999999999633 4567
Q ss_pred HHHHHHcCC---EEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCC
Q 013596 219 VFRMRLLGA---EVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGG 295 (439)
Q Consensus 219 ~~~m~~~GA---~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~ 295 (439)
..+|..+|+ +++.++ ++++||++.+++.+.+..-...+.+.++|++||++.+ +|.+..+|++.|+..+..+
T Consensus 173 ~~Qm~t~g~~Nv~vi~V~---G~fDd~q~~vk~~~~d~~~~~~~~l~saNSiN~~Ri~---~Q~~yyf~a~~ql~~~~~~ 246 (460)
T cd01560 173 ELQMTTLPADNVHVVAVE---GDFDDCQSLVKALFADEDFNKKLKLSSANSINWARIL---AQIVYYFYAYLQLLKRGEG 246 (460)
T ss_pred HHHHHhhCCCceEEEEEc---CCHHHHHHHHHHHhcChhhHhcceEEEEeccCHHHHH---HHHHHHHHHHHHhccccCC
Confidence 788999996 677775 4699998877664433212233445678888999874 5555569999887433113
Q ss_pred CCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEEEecCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCcccc
Q 013596 296 KPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSIS 374 (439)
Q Consensus 296 ~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVep~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia 374 (439)
.|+.|+||+|+||++.|++.+.+ ..|..|+|++++.+ +.+.+.+..|.+... ....+|++
T Consensus 247 ~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n~n-----~il~~~~~~G~y~~~--------------~~~~~T~s 307 (460)
T cd01560 247 EKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNEN-----DVLRRFFKTGRYDRR--------------ESLKQTLS 307 (460)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeCCC-----hHHHHHHHcCCCcCC--------------CCCCCCcC
Confidence 68999999999999999999987 67989999988766 345667888876421 12468999
Q ss_pred cccCCCCCCCchhhhhhc---CCc------------------------------EEEEeCHHHHHHHHHHHHHcCCceEE
Q 013596 375 AGLDYPGVGPEHSFLKDE---GRA------------------------------EYYNVTDDEALEGMKLYLILPFKLLS 421 (439)
Q Consensus 375 ~GL~~~~vg~~~~~l~~~---~~~------------------------------~~v~VsD~ea~~A~~~L~~~~~~l~~ 421 (439)
++|+.... .++.++... ... ..+.|+|+|+++++++++ +++|+++
T Consensus 308 pamdI~~p-sn~eR~L~~l~~~~g~~~~~~m~~~~~~g~~~~~~~~l~~~~~~f~a~~vsD~ei~~~i~~~~-~~~G~~v 385 (460)
T cd01560 308 PAMDILKS-SNFERLLFLLAGRDRTKVKMLMEEFEATGFLSLPKEELKKLREDFSSGSVSDEETLETIREVY-EETGYLI 385 (460)
T ss_pred chhhcCCC-CCHHHHHHHHhCCCHHHHHHHHHHHHhcCCEecCHHHHHhhhccceEEEECHHHHHHHHHHHH-HhcCEEE
Confidence 99996433 333332211 011 568999999999999884 5569999
Q ss_pred chhHHHHHHHHHhhh
Q 013596 422 RHGGLWLLVNCLHKL 436 (439)
Q Consensus 422 epagA~a~Aal~~~~ 436 (439)
|||+|++++++....
T Consensus 386 dPhtAva~aa~~~~~ 400 (460)
T cd01560 386 DPHTAVGVRAAERVR 400 (460)
T ss_pred CchHHHHHHHHHHHH
Confidence 999999999986543
No 82
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=100.00 E-value=1.8e-35 Score=285.71 Aligned_cols=303 Identities=37% Similarity=0.509 Sum_probs=248.3
Q ss_pred hHHHHHHHHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcch
Q 013596 108 FQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQ 187 (439)
Q Consensus 108 f~~~~~~~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGN 187 (439)
.++++.+.... +||||||+++.+|.+.|+ ..++||+|.|...||||||++.|+.++-.++..|.++++.++++|+
T Consensus 64 IP~Ev~e~Y~~-~gRPTPL~RA~~LE~~L~----tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~~rl~TETGAGQ 138 (432)
T COG1350 64 IPEEVREAYLQ-IGRPTPLIRAKNLEEALG----TPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGAKRLTTETGAGQ 138 (432)
T ss_pred CcHHHHHHHHH-hCCCCchhhhhhHHHHhC----CCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCceeeecccCCch
Confidence 33444444332 579999999999999994 5799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCC---------------CCCHHHHHHHHHHHHHH
Q 013596 188 HGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG---------------TATLKDATSEAIRDWVT 252 (439)
Q Consensus 188 hG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~---------------~~~~~da~~~a~~~~~~ 252 (439)
+|.|+++||+.+|++|+|||-..+-...+.+...|+.|||+|++.++. .+++.-|+.+|+++.++
T Consensus 139 WGsAlslA~alf~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~ 218 (432)
T COG1350 139 WGSALSLAAALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALK 218 (432)
T ss_pred HHHHHHHHHHHhCceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHh
Confidence 999999999999999999998755433445677899999999987642 13455688889988766
Q ss_pred ccCCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-----cCCCcEEEE
Q 013596 253 NVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-----NDKDVRLIG 327 (439)
Q Consensus 253 ~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-----~~p~vrvig 327 (439)
+ ++..|.++|+.|. |..+|.+||.|+..|+ ++.+..||++|.|||||+|.+|+..-|. .....++|+
T Consensus 219 ~-~~~kY~lGSVlnh------vllhQTViGlEakkQl-e~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiA 290 (432)
T COG1350 219 N-ENTKYSLGSVLNH------VLLHQTVIGLEAKKQL-EQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIA 290 (432)
T ss_pred C-CCceecchhHHHH------HHHHHHHHhHHHHHHH-HhcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEE
Confidence 5 4688999888652 3468899999999997 7888889999999999999999988875 133499999
Q ss_pred EecCCCCCCchhhhhhhhcCCeeeecc--------chhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEE
Q 013596 328 VEAAGFGLDSGKHAATLSKGEVGVLHG--------ALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYN 399 (439)
Q Consensus 328 Vep~~s~~~~~~~~~sl~~G~~~~~~g--------~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~ 399 (439)
|||..+ .+++.|++..-.| .++|++-+ ...++...|.||+|.++.|..+.|...+..+.+.
T Consensus 291 vep~a~--------P~lT~GeY~YD~gDtagltPllKMyTlGh---d~vpPpihAgGLRYHG~aPtls~L~~~Giv~a~a 359 (432)
T COG1350 291 VEPKAC--------PKLTKGEYRYDFGDTAGLTPLLKMYTLGH---DYVPPPIHAGGLRYHGVAPTLSLLVKEGIVEARA 359 (432)
T ss_pred eCCccC--------CccccceeeccCCchhccchhhhhhccCC---CccCCCcccccccccCcChHHHHHHHcCccccee
Confidence 999997 4788887764322 22233221 2456777899999999999999999999999999
Q ss_pred eCHHHHHHHHHHHHHcCCceEEchhHHHHHHHHHhh
Q 013596 400 VTDDEALEGMKLYLILPFKLLSRHGGLWLLVNCLHK 435 (439)
Q Consensus 400 VsD~ea~~A~~~L~~~~~~l~~epagA~a~Aal~~~ 435 (439)
.+.+|+++|.+.++.. .|++--|.++-|+.+++..
T Consensus 360 y~Q~Evfeaa~lFa~~-EGiVPAPEsaHAi~~aid~ 394 (432)
T COG1350 360 YDQEEVFEAAVLFART-EGIVPAPESAHAIKAAIDE 394 (432)
T ss_pred cChHHHHHHHHHHHHh-cCCccCCcchhhHHHHHHH
Confidence 9999999999988654 4999999999998877653
No 83
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=5.3e-34 Score=287.34 Aligned_cols=277 Identities=18% Similarity=0.202 Sum_probs=188.4
Q ss_pred HHhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCC--CchhhhHHHHHHHHHHHhCCCeeE-EecCcchHHHH
Q 013596 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHT--GAHKINNAVGQALLAKRLGKTRII-AETGAGQHGVA 191 (439)
Q Consensus 115 ~i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npT--GSfK~Rga~~~~~~a~~~g~~~~V-v~aSsGNhG~A 191 (439)
++.... ++|||++++++++.. +.+||+|+|++||+ ||||+|++.+++..+.+.|.+.+| +++|+||||+|
T Consensus 14 ~~~l~~-~~TPl~~~~~l~~~~------g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~~~vv~~~~ssGN~g~a 86 (329)
T PRK14045 14 RVELIP-WETPIQYLPNISREL------GADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGADVVITVGAVHSNHAFV 86 (329)
T ss_pred CcccCC-CCCCcccchhhHHHh------CCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCCCEEEEeCccHHHHHHH
Confidence 355555 589999999999876 78999999999996 899999999999988888876554 26899999999
Q ss_pred HHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCC--CHHHHHHHHHHHHHHccCCceEEecccCCCCC
Q 013596 192 TATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTA--TLKDATSEAIRDWVTNVETTHYILGSVAGPHP 269 (439)
Q Consensus 192 lA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~--~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p 269 (439)
+|++|+.+|++|+||||.... ...|...++.+||+|+.++.... ..+.+.+ ..+++.++....+|+..++.|+..
T Consensus 87 lA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~p~~~~n~~~ 163 (329)
T PRK14045 87 TGLAAKKLGLDAVLVLRGKEE--LKGNYLLDKIMGIETRVYEAKDSFELMKYAEE-VAEELKGEGRKPYIIPPGGASPVG 163 (329)
T ss_pred HHHHHHHcCCeEEEEEeCCCC--CCcCHHHHHHCCCEEEEECCCcccchHHHHHH-HHHHHHhcCCCEEEECCCCCchhH
Confidence 999999999999999997532 23355668999999998864211 1223332 223233222223334455433322
Q ss_pred cchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEEEecCCCCCCchhhhhhhhcCC
Q 013596 270 YPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGE 348 (439)
Q Consensus 270 ~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVep~~s~~~~~~~~~sl~~G~ 348 (439)
. .+|.....|+.+|+.+ .+..+|+||+|+|+||+++|++.+++ .+|++|||||++.+.. ..+...+....
T Consensus 164 ~-----~g~~~~~~EI~~q~~~-~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~~~---~~~~~~~~~~~ 234 (329)
T PRK14045 164 T-----LGYVRAVGEIATQVKK-LGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGSFG---EKMKEKVKNLV 234 (329)
T ss_pred H-----HHHHHHHHHHHHHHHh-cCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCH---HHHHHHHHHHH
Confidence 1 4555444577777632 22469999999999999999999998 7899999999997631 11111111000
Q ss_pred eeeeccchhhhccccCCCccCCcccccccCCCCCCC-chhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEch-hHH
Q 013596 349 VGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGP-EHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRH-GGL 426 (439)
Q Consensus 349 ~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~-~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~ep-agA 426 (439)
. ..+.+ .|++ ... ...+.+.. .+++..++ +|+++++++++.+ ++|+.+| +++
T Consensus 235 ~-------------------~~~~~-~g~~---~~~~~~~~~d~~-~~~y~~~~-~e~~~~~~~la~~-eGi~ldpvytg 288 (329)
T PRK14045 235 K-------------------KTKEL-LGVK---VKVQEPELYDYS-FGEYGKIT-KEVAKLIRSVGTM-EGLILDPVYTG 288 (329)
T ss_pred H-------------------HHHHH-hCCC---CCccceEecccc-cCCCCCCC-HHHHHHHHHHHHh-hCCCCccchHH
Confidence 0 00001 1111 100 11122332 36778888 6999999998654 5999999 999
Q ss_pred HHHHHHHhhh
Q 013596 427 WLLVNCLHKL 436 (439)
Q Consensus 427 ~a~Aal~~~~ 436 (439)
.++++++...
T Consensus 289 k~~~a~~~~~ 298 (329)
T PRK14045 289 KAFYGLMDLA 298 (329)
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 84
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-34 Score=273.86 Aligned_cols=284 Identities=21% Similarity=0.272 Sum_probs=217.7
Q ss_pred HhhhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhC---CCeeEEecCcchHHHHH
Q 013596 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLG---KTRIIAETGAGQHGVAT 192 (439)
Q Consensus 116 i~~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g---~~~~Vv~aSsGNhG~Al 192 (439)
+.+.|| .|||++...|++.. |++|+.|.|++||.||.|||.|++++..|++.| +...|++.++|++|+++
T Consensus 43 v~~~IG-nTpliri~sLs~aT------GcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~gg~v~EGtaGsTgIsl 115 (391)
T KOG1481|consen 43 VEGAIG-NTPLIRINSLSNAT------GCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRGGTVVEGTAGSTGISL 115 (391)
T ss_pred hHHhhC-CCceEEeecccccc------ccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccCceEEecCCCccchhH
Confidence 456677 59999999999975 999999999999999999999999999999876 45689999999999999
Q ss_pred HHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCC-CCHHHHHHHHHHHHHHccCC-----ceEEecccCC
Q 013596 193 ATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGT-ATLKDATSEAIRDWVTNVET-----THYILGSVAG 266 (439)
Q Consensus 193 A~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~-~~~~da~~~a~~~~~~~~~~-----~~y~~~s~~~ 266 (439)
|..|+.+|.+|+|+||.+. ++.|.+.++.+||+|..|++.. .+...-...+.+. ..+..+ ..|+.+|+.|
T Consensus 116 A~v~~a~Gyk~~I~mPddq---s~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~-an~~~~~~ngi~g~fAdQFeN 191 (391)
T KOG1481|consen 116 AHVARALGYKCHIYMPDDQ---SQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRA-ANETPNASNGIRGWFADQFEN 191 (391)
T ss_pred HHhhhhcCcceEEECCChH---HHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHH-hhhcccccCCcccchhhhhcC
Confidence 9999999999999999965 5779999999999999997632 1122223333332 221112 2477799988
Q ss_pred CCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCC-cEEEEEecCCCCCCchhhhhhh
Q 013596 267 PHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKD-VRLIGVEAAGFGLDSGKHAATL 344 (439)
Q Consensus 267 ~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~-vrvigVep~~s~~~~~~~~~sl 344 (439)
+.+|. ..|.+.|.| |+.|..+.+|++++.+|+||+++|+..+++ .++. +.++.++|.++++ +...
T Consensus 192 ~AN~~----aHyetTGPE----Iw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSGl-----YnkV 258 (391)
T KOG1481|consen 192 VANWL----AHYETTGPE----IWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSGL-----YNKV 258 (391)
T ss_pred HHHHH----HHhcCcCcH----HHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCch-----hhhh
Confidence 88773 344455555 566667789999999999999999999998 4444 8999999999864 2222
Q ss_pred hcCCeeeeccchhhhccccCCCc--cCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEc
Q 013596 345 SKGEVGVLHGALSYLLQNEDGQI--IEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSR 422 (439)
Q Consensus 345 ~~G~~~~~~g~~~~~~~~~~g~~--~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~e 422 (439)
..| -.|...+.+|.. ...+||.+|++...+..++....+ ..|+.+.|+|++++++.+.|+..+ |+++.
T Consensus 259 ~~G--------Vmy~~~e~eG~r~r~q~dti~EGIGinRiT~Nf~m~~~-liD~a~rv~Deqai~Msr~Ll~~d-GLFvG 328 (391)
T KOG1481|consen 259 NYG--------VMYDHIETEGTRRRNQVDTITEGIGINRITGNFQMAED-LIDDAMRVTDEQAINMSRYLLDND-GLFVG 328 (391)
T ss_pred hhh--------hhhhhhhhcCcccCCCcchhhhcccccccccccccchh-hhhhheecChHHHHHHHHHhhhcC-ceEec
Confidence 222 123334444543 356899999987777666544433 468999999999999999887655 99999
Q ss_pred hhHHHHHHHHH
Q 013596 423 HGGLWLLVNCL 433 (439)
Q Consensus 423 pagA~a~Aal~ 433 (439)
.++|....|++
T Consensus 329 sSsa~N~VaAv 339 (391)
T KOG1481|consen 329 SSSALNCVAAV 339 (391)
T ss_pred chhhHHHHHHH
Confidence 99988766554
No 85
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=99.88 E-value=1e-21 Score=189.91 Aligned_cols=276 Identities=25% Similarity=0.325 Sum_probs=188.5
Q ss_pred hhcCCCCcccchhhhhhHhcCCCCCCCeEEEEeCCCCC--CCchhhhHHHHHHHHHHHhCCCeeEEecCcc--hHHHHHH
Q 013596 118 DYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNH--TGAHKINNAVGQALLAKRLGKTRIIAETGAG--QHGVATA 193 (439)
Q Consensus 118 ~~ig~~TPL~~~~~l~~~l~~~~~~g~~IylK~E~~np--TGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsG--NhG~AlA 193 (439)
+++.+|||+..++++++++ +.+||+||||..+ .|.+|+|...+.+.++.+.|.+ ++++.++- ||..++|
T Consensus 10 ~l~~~pTPiq~L~rls~~l------g~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~d-TlvT~GgiQSNh~r~tA 82 (323)
T COG2515 10 ELIFGPTPIQKLPRLSAHL------GVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGAD-TLVTYGGIQSNHVRQTA 82 (323)
T ss_pred ccCCCCChhhhHHHHHHhc------CeEEEEEcccccccccCccHHHHHHHHHhhhhhcCCc-EEEEecccchhHHHHHH
Confidence 4456799999999999987 7999999999965 5899999999999999998987 45566544 9999999
Q ss_pred HHHHHcCCeEEEEecCCc-hhhHHHHHHHHHHcCCEEEEEcCCCCCH--HHHHHHHHHHHHHccCCceEEecccCCCCCc
Q 013596 194 TVCARFGLQCIVYMGAQD-MERQALNVFRMRLLGAEVRAVHSGTATL--KDATSEAIRDWVTNVETTHYILGSVAGPHPY 270 (439)
Q Consensus 194 ~aa~~~Gi~~~IvmP~~~-~~~~~~k~~~m~~~GA~Vv~v~~~~~~~--~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~ 270 (439)
++|+++|++|+.+.-+.. ......|....+.+|++++.++.+. ++ ..-.++..++ +++..+..|++.... .||+
T Consensus 83 avA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~-d~~~~~~~~~~~e~-~~~~g~kpyvIp~GG-~~~~ 159 (323)
T COG2515 83 AVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGT-DIGINASAEELAEE-VRKQGGKPYVIPEGG-SSPL 159 (323)
T ss_pred HHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCC-ChhhchhhHHHHHH-HHhcCCCCcEeccCC-cCcc
Confidence 999999999999996632 1113447777889999999998753 23 2222333333 333345566654332 4554
Q ss_pred chhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh-cCCCcEEEEEecCCCCCCchhhhhhhhcCCe
Q 013596 271 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEV 349 (439)
Q Consensus 271 ~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~-~~p~vrvigVep~~s~~~~~~~~~sl~~G~~ 349 (439)
-. -|+...+.|+..|. +++ -.+|.||+++|+|||.||+..++. ..|+++|||+.....+. .++....
T Consensus 160 g~---lGyv~~a~Ei~~Q~-~~~-~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~-------~~~~qv~ 227 (323)
T COG2515 160 GA---LGYVRLALEIAEQA-EQL-LKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPE-------KLKEQVL 227 (323)
T ss_pred cc---ccHHHHHHHHHHHH-hhc-cCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHH-------HHHHHHH
Confidence 32 46667778888776 333 479999999999999999999997 67999999999888631 1111000
Q ss_pred eeeccchhhhccccCCCccCCcccccccCCCCCCCchh-hhhhcCCcEEEEeCHHHHHHHHHHHHHcCCceEEchh-HHH
Q 013596 350 GVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHS-FLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHG-GLW 427 (439)
Q Consensus 350 ~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~-~l~~~~~~~~v~VsD~ea~~A~~~L~~~~~~l~~epa-gA~ 427 (439)
. + ..+.+.-++ ++.+.. .+...+...-+....+|.+++++.++..+ +++.+|- .+-
T Consensus 228 ~---------L---------~~~~a~~~~---~~~~~~v~~~~dy~~~~Yg~p~~e~~e~i~~~~~~e-GillDpVYtgK 285 (323)
T COG2515 228 N---------L---------AQATAELLG---LGSEADVLLSDDYHHPGYGKPNEEDIEAIKLLARLE-GILLDPVYTGK 285 (323)
T ss_pred H---------H---------HHHHHHHcC---CCCCceEEEEecccCCccCCcCHHHHHHHHHHHHhh-CcccccccchH
Confidence 0 0 111222222 222211 12222333446778899999999886555 8988884 334
Q ss_pred HHHHHHhhhh
Q 013596 428 LLVNCLHKLI 437 (439)
Q Consensus 428 a~Aal~~~~~ 437 (439)
++.+++...+
T Consensus 286 am~Glid~~~ 295 (323)
T COG2515 286 AMYGLIDLAR 295 (323)
T ss_pred HHHHHHHHHh
Confidence 5555555443
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.87 E-value=1.3e-20 Score=181.37 Aligned_cols=283 Identities=18% Similarity=0.172 Sum_probs=210.4
Q ss_pred CCcccchhhhhhHhcC--CCCCCCeEEEEeCCCCC-CCchhhhHHHHHHH-HHHHh----C-------------------
Q 013596 123 ETPLYFAERLTEHYRR--PNGGGPHIYLKREDLNH-TGAHKINNAVGQAL-LAKRL----G------------------- 175 (439)
Q Consensus 123 ~TPL~~~~~l~~~l~~--~~~~g~~IylK~E~~np-TGSfK~Rga~~~~~-~a~~~----g------------------- 175 (439)
++||+..+.+-+.+.. ...-..++|+|++++-| +||.|.||-.+.++ +|+++ |
T Consensus 78 ES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~f~~F 157 (443)
T COG3048 78 ESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEEFKDF 157 (443)
T ss_pred ccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHHHHHH
Confidence 5799888765543311 01114689999999999 89999998877653 44332 2
Q ss_pred -CCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHcc
Q 013596 176 -KTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNV 254 (439)
Q Consensus 176 -~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~ 254 (439)
.+.-|...|+||.|.++-...+.+|++++|.|..++ .+||.+.+|+.|.+|+..+. +|..|+++-.++ ++.
T Consensus 158 Fs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADA---r~WKKd~LRs~gV~ViEYe~---DY~~AVeeGRk~--a~~ 229 (443)
T COG3048 158 FSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADA---RAWKKDKLRSHGVTVVEYEQ---DYGVAVEEGRKE--AES 229 (443)
T ss_pred HHhheEeecccCccceehhhhhhhhcceEEEEecchH---HHHHHHHHHhcCceEEEecc---hhhHHHHHhhhh--hcc
Confidence 223578899999999999999999999999998866 79999999999999999874 678888887664 234
Q ss_pred CCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhC-----CCCCEEEEcCCchHHHHHHHHHHh--cCCCcEEEE
Q 013596 255 ETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWG-----GKPDVLIACVGGGSNAMGLFHEFV--NDKDVRLIG 327 (439)
Q Consensus 255 ~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g-----~~~d~vvvpvG~GG~~aGi~~~~~--~~p~vrvig 327 (439)
+...|+++..++.+-| .||.+.+..+..|+-+ .+ ..|-.|..|+|-||.-.|++.++| -..+|.++-
T Consensus 230 DP~c~FiDDE~S~~LF-----LGYaVAa~Rlk~Q~d~-~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfF 303 (443)
T COG3048 230 DPNCFFIDDENSRTLF-----LGYAVAAQRLKKQFDE-QGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFF 303 (443)
T ss_pred CCceEEecccchhhhh-----hhHHHHHHHHHHHHHh-cCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEE
Confidence 5667888887777766 6888888888888744 33 256789999999999999999988 467899999
Q ss_pred EecCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHH
Q 013596 328 VEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALE 407 (439)
Q Consensus 328 Vep~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~ 407 (439)
+||..++ .|---+.+| +|...+ .||- -....|.+|||++..++--.-.+.+...+.+++|+|+..++
T Consensus 304 aEPthsP----cMlLGv~tG----lHe~IS--Vqdi---Gidn~TaADGLAVgRpSgfVgr~me~lL~G~~TvdD~~ly~ 370 (443)
T COG3048 304 AEPTHSP----CMLLGVYTG----LHEQIS--VQDI---GIDNLTAADGLAVGRPSGFVGRAMERLLDGYYTVDDQTLYD 370 (443)
T ss_pred ecCCCCh----HHHHhhhhc----ccccee--eEee---cccccccccceeecCccchHHHHHHHHhCCcEEechHHHHH
Confidence 9999873 343333333 221111 0111 12356889999955444334455555679999999999999
Q ss_pred HHHHHHHcCCceEEchhHHHHHHHHH
Q 013596 408 GMKLYLILPFKLLSRHGGLWLLVNCL 433 (439)
Q Consensus 408 A~~~L~~~~~~l~~epagA~a~Aal~ 433 (439)
-+..|+.++ ++..||++.+++++..
T Consensus 371 lL~~L~~~e-~~rlEPSalAgm~Gp~ 395 (443)
T COG3048 371 LLGWLAQEE-GIRLEPSALAGMAGPQ 395 (443)
T ss_pred HHHHHHHhc-CcccCchhhhcccCcc
Confidence 999886554 9999999988877643
No 87
>PF14821 Thr_synth_N: Threonine synthase N terminus; PDB: 3V7N_A 1VB3_A 1KL7_A.
Probab=95.77 E-value=0.014 Score=46.69 Aligned_cols=54 Identities=20% Similarity=0.298 Sum_probs=35.4
Q ss_pred ccCCCCccccccccccHHHHHHHHHHhhCCchhHHHHHHHHhhhcCCCCcccchhhhh
Q 013596 76 FGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLT 133 (439)
Q Consensus 76 ~g~~GG~~vPe~l~~~l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig~~TPL~~~~~l~ 133 (439)
.+..||+|||+.++. +...+.+...+.+|.+....+++.++|...|--.+..+.
T Consensus 22 lA~DGGLyvP~~iP~----l~~~~l~~l~~~sy~elA~~il~~f~~~di~~~~L~~ii 75 (79)
T PF14821_consen 22 LAPDGGLYVPEEIPK----LSKEELEELKNLSYAELAFEILSPFLGDDIPEEELKEII 75 (79)
T ss_dssp SBTTSB-EEESS---------HHHHHHHTTS-HHHHHHHHHHHHCCCCS-HHHHHHHH
T ss_pred CCCCCeeEecCcCCC----CCHHHHHHHHCCCHHHHHHHHHHHHHccCCCHHHHHHHH
Confidence 468999999999765 666655666788999999999999996555555554443
No 88
>KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism]
Probab=84.95 E-value=1.2 Score=42.28 Aligned_cols=94 Identities=10% Similarity=-0.019 Sum_probs=63.1
Q ss_pred cCCCcEEEEEecCCCCCCchhhhhhhhcCCeeeeccchhhhccccCCCccCCcccccccCCCCCCCchhhhhh-------
Q 013596 319 NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKD------- 391 (439)
Q Consensus 319 ~~p~vrvigVep~~s~~~~~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~------- 391 (439)
..|.-|+|.+.+++ +-+.++++.|.+.... .-..|++..||.- ++.++++...
T Consensus 57 GlPirklviAtNeN-----dIl~rf~ktG~yelse--------------kvaaT~spamDIl-vssN~ER~lwlla~~d~ 116 (266)
T KOG2616|consen 57 GLPIRKLVIATNEN-----DILHRFVKTGDYELSE--------------KVAATLSPAMDIL-VSSNFERVLWLLAGSDS 116 (266)
T ss_pred CCchhheeeecccc-----HHHHHHHHcCchhhhH--------------HHHhhcCcchhhc-ccccHHHHHHHHhCChH
Confidence 67888899999988 5788999999875311 1123666666642 3333321100
Q ss_pred ---------cCC-----------------cEEEEeCHHHHHHHHHHHHHcCCceEEchhHHHHHHHHH
Q 013596 392 ---------EGR-----------------AEYYNVTDDEALEGMKLYLILPFKLLSRHGGLWLLVNCL 433 (439)
Q Consensus 392 ---------~~~-----------------~~~v~VsD~ea~~A~~~L~~~~~~l~~epagA~a~Aal~ 433 (439)
..+ -....||++|+.++++.. |+.-+++.+||.|+|+-...
T Consensus 117 qi~~~l~nefe~~~~~qv~kel~ekls~dftse~vS~ee~~~ti~k~-yes~~YiLdPHTAVav~~~~ 183 (266)
T KOG2616|consen 117 QITRALMNEFERTGSVQVPKELHEKLSEDFTSERVSNEETTQTIKKI-YESNHYILDPHTAVAVNYHY 183 (266)
T ss_pred HHHHHHHHHHhhCCceecCHHHHHHHHHhhhhhhcCcHHHHHHHHHH-hccCCeeecCchHHHHHHHH
Confidence 000 134679999999999998 56669999999999886543
No 89
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=80.72 E-value=19 Score=31.42 Aligned_cols=73 Identities=15% Similarity=0.219 Sum_probs=49.3
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCC-chhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQ-DMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~-~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~ 251 (439)
.++++.+++.-|.++|....+.|-..++++... +.+..+.....++..|.++..+..+ -+..+.++.+.+...
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D-~~~~~~~~~~~~~~~ 75 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECD-LSDPESIRALIEEVI 75 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESE-TTSHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccc-ccccccccccccccc
Confidence 467888889999999999888877777776654 2222333455677889988888742 233455555555544
No 90
>PRK13529 malate dehydrogenase; Provisional
Probab=80.64 E-value=89 Score=34.18 Aligned_cols=86 Identities=22% Similarity=0.273 Sum_probs=54.3
Q ss_pred hHHHHHHHHhhhcCCCCcccchhhhh--------hHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCCCee
Q 013596 108 FQEELSGILRDYVGRETPLYFAERLT--------EHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRI 179 (439)
Q Consensus 108 f~~~~~~~i~~~ig~~TPL~~~~~l~--------~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~ 179 (439)
|.+++-..++... |+=+++++.++ +++ ..++-+=.+|.|-||+.=.=+.++.+....+.=.+..
T Consensus 226 f~defv~av~~~~--P~~~I~~EDf~~~~af~iL~ry------r~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~r 297 (563)
T PRK13529 226 FVDEFVQAVKRRF--PNALLQFEDFAQKNARRILERY------RDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQR 297 (563)
T ss_pred HHHHHHHHHHHhC--CCeEEehhhcCCchHHHHHHHh------ccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcE
Confidence 4445544555444 45577776553 344 3356666888888887766666666654432223445
Q ss_pred EEecCcchHHHHHHHHHHH----cCC
Q 013596 180 IAETGAGQHGVATATVCAR----FGL 201 (439)
Q Consensus 180 Vv~aSsGNhG~AlA~aa~~----~Gi 201 (439)
|+..++|..|.++|-.... .|+
T Consensus 298 iv~~GAGsAgiGia~ll~~~~~~~Gl 323 (563)
T PRK13529 298 IVFLGAGSAGCGIADQIVAAMVREGL 323 (563)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHcCC
Confidence 6678999999999887655 476
No 91
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=80.46 E-value=60 Score=35.44 Aligned_cols=246 Identities=15% Similarity=0.161 Sum_probs=121.9
Q ss_pred hHHHHHHHHhhhcCCCCcccchhhhh--------hHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCCCee
Q 013596 108 FQEELSGILRDYVGRETPLYFAERLT--------EHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRI 179 (439)
Q Consensus 108 f~~~~~~~i~~~ig~~TPL~~~~~l~--------~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~ 179 (439)
|.+++-..++... |+=+++++.++ +++ ..++-+=.+|.|-||+.=.=+.++.+....+.-.+..
T Consensus 228 f~defv~av~~~~--P~~~Iq~EDf~~~naf~iL~ky------r~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~r 299 (559)
T PTZ00317 228 LLDEFMEAVSSRW--PNAVVQFEDFSNNHCFDLLERY------QNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQR 299 (559)
T ss_pred HHHHHHHHHHHhC--CCeEEehhhcCCccHHHHHHHh------ccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcE
Confidence 4455555555544 45577776543 344 3456666888888887766666666654433223455
Q ss_pred EEecCcchHHHHHHHHHHH----cCC------eEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHH
Q 013596 180 IAETGAGQHGVATATVCAR----FGL------QCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (439)
Q Consensus 180 Vv~aSsGNhG~AlA~aa~~----~Gi------~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~ 249 (439)
|+..++|..|.++|..... .|+ +-+.++... | + .+....+.+ ...++.
T Consensus 300 iv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~---------------G--L-l~~~r~~~l----~~~k~~ 357 (559)
T PTZ00317 300 IVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSK---------------G--L-VTTTRGDKL----AKHKVP 357 (559)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCC---------------C--e-EeCCCCccc----cHHHHH
Confidence 6778999999999987653 576 333333221 1 0 111100112 222222
Q ss_pred HHHccCCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHH-HHHHHHHh-cCCCcEEEE
Q 013596 250 WVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNA-MGLFHEFV-NDKDVRLIG 327 (439)
Q Consensus 250 ~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~-aGi~~~~~-~~p~vrvig 327 (439)
++..... .+.. ...++ .|+. +.. +||+++-.+|-+|.+ --+...+. ..+.+=|+.
T Consensus 358 fa~~~~~-----------~~~~-----~~~~L-~e~v----~~~--KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFa 414 (559)
T PTZ00317 358 FARTDIS-----------AEDS-----SLKTL-EDVV----RFV--KPTALLGLSGVGGVFTEEVVKTMASNVERPIIFP 414 (559)
T ss_pred Hhccccc-----------cccc-----cCCCH-HHHH----hcc--CCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence 3221100 0000 00000 2332 322 689999888866655 34444443 345666666
Q ss_pred EecCCCCCCc-hhhhhhhhcCCeeeeccchhhhccccCCCccCCcccccccCCCCCCCchhhhhhcCCcEEEEeCHHHHH
Q 013596 328 VEAAGFGLDS-GKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEAL 406 (439)
Q Consensus 328 Vep~~s~~~~-~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~ 406 (439)
..+-.+-.++ ...+-.|+.|+...-.|++-.- ...+|....+.-.-+.+-.||+|-. ......-.|+|+..+
T Consensus 415 LSNPt~~aE~tpeda~~~T~Grai~AtGspf~p-v~~~G~~~~p~Q~NN~~iFPGiglG------~l~~~a~~Itd~m~~ 487 (559)
T PTZ00317 415 LSNPTSKAECTAEDAYKWTNGRAIVASGSPFPP-VTLNGKTIQPSQGNNLYVFPGVGLG------CAIAQPSYIPDEMLI 487 (559)
T ss_pred CCCCCCCCCcCHHHHHhhccCCEEEEECCCCCC-cccCCeeeccCcCcceeeccchhhh------hHhhcccCCCHHHHH
Confidence 6554432332 3334456777766544432110 0112222111111122233333322 122466789999999
Q ss_pred HHHHHHH
Q 013596 407 EGMKLYL 413 (439)
Q Consensus 407 ~A~~~L~ 413 (439)
.|.+.|+
T Consensus 488 aAA~aLA 494 (559)
T PTZ00317 488 AAAASLA 494 (559)
T ss_pred HHHHHHH
Confidence 9999887
No 92
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=78.60 E-value=1.1e+02 Score=33.62 Aligned_cols=83 Identities=18% Similarity=0.169 Sum_probs=50.5
Q ss_pred HHHHHHHHhhhcCCCCcccchhhhh--------hHhcCCCCCCCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeE
Q 013596 109 QEELSGILRDYVGRETPLYFAERLT--------EHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRII 180 (439)
Q Consensus 109 ~~~~~~~i~~~ig~~TPL~~~~~l~--------~~l~~~~~~g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~V 180 (439)
.+++-..++...| +.=+++++.++ +++ ..++-+=.+|.|-||+.=.=+.++.+....+.=.+..|
T Consensus 252 ~defv~av~~~fG-p~~~I~~EDf~~~~af~iL~ry------r~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~ri 324 (581)
T PLN03129 252 VDEFMEAVKQRWG-PKVLVQFEDFANKNAFRLLQRY------RTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRI 324 (581)
T ss_pred HHHHHHHHHHHhC-CccEEehhhcCCccHHHHHHHh------ccCCCEeccccchHHHHHHHHHHHHHHHhCCchhhceE
Confidence 4455555555443 33466665443 344 34666668888888877666666655544322234456
Q ss_pred EecCcchHHHHHHHHHHH
Q 013596 181 AETGAGQHGVATATVCAR 198 (439)
Q Consensus 181 v~aSsGNhG~AlA~aa~~ 198 (439)
+..++|..|.++|-....
T Consensus 325 v~~GAGsAgigia~ll~~ 342 (581)
T PLN03129 325 LFAGAGEAGTGIAELIAL 342 (581)
T ss_pred EEECCCHHHHHHHHHHHH
Confidence 778999999999877555
No 93
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=74.96 E-value=16 Score=28.40 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=36.3
Q ss_pred ecCcchHHHHHHHHHHHcCCeEEEEecCCch------hhHHHHHHHHHHcCCEEEE
Q 013596 182 ETGAGQHGVATATVCARFGLQCIVYMGAQDM------ERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 182 ~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~------~~~~~k~~~m~~~GA~Vv~ 231 (439)
.-++|..|.-+|.+.+.+|.+++++...... .....-.+.++..|-+++.
T Consensus 4 ViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 4 VIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred EECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 3579999999999999999999999875322 2223334556777777664
No 94
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=71.65 E-value=26 Score=29.39 Aligned_cols=32 Identities=28% Similarity=0.427 Sum_probs=19.7
Q ss_pred CCCEEEEcCCchHHHHHHHHHHhcCCCcEEEEEe
Q 013596 296 KPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVE 329 (439)
Q Consensus 296 ~~d~vvvpvG~GG~~aGi~~~~~~~p~vrvigVe 329 (439)
.+|+||-|+|++..+.-.+..++ |.-+++-+-
T Consensus 58 ~~d~vid~~g~~~~~~~~~~~l~--~~G~~v~vg 89 (130)
T PF00107_consen 58 GVDVVIDCVGSGDTLQEAIKLLR--PGGRIVVVG 89 (130)
T ss_dssp SEEEEEESSSSHHHHHHHHHHEE--EEEEEEEES
T ss_pred cceEEEEecCcHHHHHHHHHHhc--cCCEEEEEE
Confidence 58999999998776654444433 334444443
No 95
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=70.85 E-value=20 Score=33.60 Aligned_cols=51 Identities=18% Similarity=0.269 Sum_probs=39.7
Q ss_pred eEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEc
Q 013596 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (439)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~ 233 (439)
++|...+|+-|..++.+....+.++++++.+.+ ....+.++..|++++..+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~----~~~~~~l~~~g~~vv~~d 51 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPS----SDRAQQLQALGAEVVEAD 51 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSH----HHHHHHHHHTTTEEEES-
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccc----hhhhhhhhcccceEeecc
Confidence 356678999999999998889999999997753 223455788999998654
No 96
>PRK06128 oxidoreductase; Provisional
Probab=68.93 E-value=58 Score=31.92 Aligned_cols=58 Identities=19% Similarity=0.132 Sum_probs=39.4
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
+.++|+.++|--|.++|....+.|.++++..............+.++..|.+++.+..
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPG 113 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEec
Confidence 4578888888999999999999999987765332211122234456677887766543
No 97
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=67.32 E-value=51 Score=34.38 Aligned_cols=131 Identities=16% Similarity=0.154 Sum_probs=64.6
Q ss_pred EEecCcc-hHHHHHHHHHHHcCCeEEEEecC-Cch-hhHHHHHHHHHHcCC-EEEEEcCCCCCHH-HHHHHHHHHHHHcc
Q 013596 180 IAETGAG-QHGVATATVCARFGLQCIVYMGA-QDM-ERQALNVFRMRLLGA-EVRAVHSGTATLK-DATSEAIRDWVTNV 254 (439)
Q Consensus 180 Vv~aSsG-NhG~AlA~aa~~~Gi~~~IvmP~-~~~-~~~~~k~~~m~~~GA-~Vv~v~~~~~~~~-da~~~a~~~~~~~~ 254 (439)
|+.+|+| ++-..+.+...+.+.+++.|.-+ +-. +....-.++...+|| +++.++.- +.|- +.+..+++. ...
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r-~ef~~~~i~~aI~a--nA~ 77 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDAR-DEFAEDYIFPAIKA--NAL 77 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-H-HHHHHHTHHHHHHT--T--
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchH-HHHHHHHHHHHHHH--HHH
Confidence 4678888 89999999999888998887743 111 112333445778999 89888642 2221 222222221 111
Q ss_pred CCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEc-CCchHHHHHHHHHHh-cCCCcEEEE
Q 013596 255 ETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIAC-VGGGSNAMGLFHEFV-NDKDVRLIG 327 (439)
Q Consensus 255 ~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvp-vG~GG~~aGi~~~~~-~~p~vrvig 327 (439)
.+..|.+++ + .....|+..+.+ +.++.+ .++|.-. .|-|--..=.=.+++ .+|+.+|++
T Consensus 78 Yeg~YpL~t-----s------l~RplIa~~~v~-~A~~~g--a~~vaHG~TgkGNDqvRFe~~~~al~P~l~via 138 (388)
T PF00764_consen 78 YEGRYPLST-----S------LARPLIAKKLVE-VAREEG--ADAVAHGCTGKGNDQVRFELSIRALAPELKVIA 138 (388)
T ss_dssp BTTTB--CC-----C------CHHHHHHHHHHH-HHHHHT---SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred hCCCccccc-----c------chHHHHHHHHHH-HHHHcC--CeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence 122343321 1 122234444432 233444 6888764 455554454444454 689998875
No 98
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=65.17 E-value=90 Score=29.40 Aligned_cols=70 Identities=20% Similarity=0.161 Sum_probs=43.1
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~ 249 (439)
++++|+.++|.-|.++|......|.+++++.... +........++..|.++..+..+-.+ .+.++.+++.
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~i~~~~~~~~~~~~D~~~-~~~~~~~~~~ 80 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDP--AKLAAAAESLKGQGLSAHALAFDVTD-HDAVRAAIDA 80 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHHHhcCceEEEEEccCCC-HHHHHHHHHH
Confidence 4678888889999999999988999876654332 11222334466667777666432222 3344444443
No 99
>PRK12937 short chain dehydrogenase; Provisional
Probab=63.77 E-value=90 Score=28.98 Aligned_cols=72 Identities=17% Similarity=0.080 Sum_probs=45.2
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (439)
+.++++.++|.-|.++|....+.|.+++++..... .....-.+.++.+|.++..+...- +-.+...++++..
T Consensus 6 ~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl-~~~~~~~~~~~~~ 77 (245)
T PRK12937 6 KVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSA-AAADELVAEIEAAGGRAIAVQADV-ADAAAVTRLFDAA 77 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCH-HHHHHHHHHHHhcCCeEEEEECCC-CCHHHHHHHHHHH
Confidence 45778888899999999999999998877654322 112222344566788887765422 2233444444443
No 100
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=62.10 E-value=47 Score=30.08 Aligned_cols=75 Identities=16% Similarity=0.105 Sum_probs=50.7
Q ss_pred chhhhHHHHHHHHHHHhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEec------CCchhhHHHHHHHHHHcCCEEEE
Q 013596 158 AHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMG------AQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 158 SfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP------~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
-+-++...-.+..|++.+.+.+|+.+++|.++.-++-+...- +++++|.- ++..+-...-.+.++..|++|..
T Consensus 10 eNT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~-lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~ 88 (186)
T COG1751 10 ENTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGD-LKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLT 88 (186)
T ss_pred cchHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccC-ceEEEEEeecccccCCceecCHHHHHHHHHcCceeee
Confidence 344666666778999999999999999999887765554332 77777663 12222223344568889999976
Q ss_pred Ec
Q 013596 232 VH 233 (439)
Q Consensus 232 v~ 233 (439)
-.
T Consensus 89 ~s 90 (186)
T COG1751 89 QS 90 (186)
T ss_pred eh
Confidence 43
No 101
>PRK07109 short chain dehydrogenase; Provisional
Probab=61.53 E-value=1e+02 Score=31.01 Aligned_cols=70 Identities=23% Similarity=0.241 Sum_probs=44.5
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~ 249 (439)
+.++|+.++|--|.++|....+.|.+++++.... +......+.++..|++++.+...-.+ .+.++.+.+.
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~--~~l~~~~~~l~~~g~~~~~v~~Dv~d-~~~v~~~~~~ 78 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGE--EGLEALAAEIRAAGGEALAVVADVAD-AEAVQAAADR 78 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHHcCCcEEEEEecCCC-HHHHHHHHHH
Confidence 4577888888999999999999999877765432 11223344567788888766532222 3344444443
No 102
>PRK12743 oxidoreductase; Provisional
Probab=60.38 E-value=1e+02 Score=29.06 Aligned_cols=56 Identities=14% Similarity=0.080 Sum_probs=38.4
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
.++|+.++|.-|.++|......|.+++++....... ...-.+.++.+|.++..+..
T Consensus 4 ~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 59 (256)
T PRK12743 4 VAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEG-AKETAEEVRSHGVRAEIRQL 59 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHH-HHHHHHHHHhcCCceEEEEc
Confidence 567888888899999999999999887765432211 12223456678888776654
No 103
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=60.13 E-value=74 Score=31.32 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=35.1
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAV 232 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v 232 (439)
.+++...+|--|.+++..|+.+|.++++.... ..|.+.++.+|++.+.-
T Consensus 141 ~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s------~~~~~~~~~lGa~~vi~ 189 (325)
T TIGR02825 141 TVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGS------DEKVAYLKKLGFDVAFN 189 (325)
T ss_pred EEEEeCCccHHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHHcCCCEEEe
Confidence 45555557889999999999999986655433 23566688899976543
No 104
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=59.97 E-value=1.6e+02 Score=29.77 Aligned_cols=48 Identities=19% Similarity=0.211 Sum_probs=32.0
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
.++| .++|--|..++..++.+|.+.++++... ..|.+..+.+|++.+.
T Consensus 194 ~VlV-~G~G~vG~~a~~lak~~G~~~Vi~~~~~-----~~r~~~a~~~Ga~~~i 241 (371)
T cd08281 194 SVAV-VGLGGVGLSALLGAVAAGASQVVAVDLN-----EDKLALARELGATATV 241 (371)
T ss_pred EEEE-ECCCHHHHHHHHHHHHcCCCcEEEEcCC-----HHHHHHHHHcCCceEe
Confidence 4445 4678899998888999999544444321 2355567889986543
No 105
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=58.84 E-value=42 Score=33.74 Aligned_cols=68 Identities=15% Similarity=0.121 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhCCCeeEEecCcchHH--HHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEc
Q 013596 163 NAVGQALLAKRLGKTRIIAETGAGQHG--VATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (439)
Q Consensus 163 ga~~~~~~a~~~g~~~~Vv~aSsGNhG--~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~ 233 (439)
.|+-++.+-.+..+...|+- -++|.+ +++=-.|+.+|++.+=++.+-+ + .+.-.++++.+||+.+..+
T Consensus 147 TAyrmL~dfv~L~~GD~vIQ-NganS~VG~~ViQlaka~GiktinvVRdR~-~-ieel~~~Lk~lGA~~ViTe 216 (354)
T KOG0025|consen 147 TAYRMLKDFVQLNKGDSVIQ-NGANSGVGQAVIQLAKALGIKTINVVRDRP-N-IEELKKQLKSLGATEVITE 216 (354)
T ss_pred HHHHHHHHHHhcCCCCeeee-cCcccHHHHHHHHHHHHhCcceEEEeecCc-c-HHHHHHHHHHcCCceEecH
Confidence 45666666666666666654 456655 4555569999999999998632 1 2333456899999998875
No 106
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=58.81 E-value=1.3e+02 Score=28.83 Aligned_cols=56 Identities=25% Similarity=0.284 Sum_probs=38.3
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
+.++++.++|.-|.++|......|.+++++-.... ..+...+.++..|.++..+..
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 66 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQE--KAEAVVAEIKAAGGEALAVKA 66 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEEC
Confidence 45778888889999999999899998777665421 122223445667877766553
No 107
>PRK06182 short chain dehydrogenase; Validated
Probab=58.35 E-value=1.3e+02 Score=28.66 Aligned_cols=77 Identities=12% Similarity=0.067 Sum_probs=46.3
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVET 256 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~ 256 (439)
+.++++.++|.-|.++|......|.+++++.... .+++.+...+.+++.++.. + .+.++.+.+...+...+
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~------~~l~~~~~~~~~~~~~Dv~--~-~~~~~~~~~~~~~~~~~ 74 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARRV------DKMEDLASLGVHPLSLDVT--D-EASIKAAVDTIIAEEGR 74 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH------HHHHHHHhCCCeEEEeeCC--C-HHHHHHHHHHHHHhcCC
Confidence 4577888888999999999888999887765431 1233344557777776642 2 33444444443333223
Q ss_pred ceEEec
Q 013596 257 THYILG 262 (439)
Q Consensus 257 ~~y~~~ 262 (439)
-.++++
T Consensus 75 id~li~ 80 (273)
T PRK06182 75 IDVLVN 80 (273)
T ss_pred CCEEEE
Confidence 334443
No 108
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=57.67 E-value=1.2e+02 Score=28.75 Aligned_cols=56 Identities=20% Similarity=0.101 Sum_probs=37.7
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
+.++|+.++|.-|.++|......|.+++++-... +....-...++..|.+++.+..
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 66 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDINQ--ELVDKGLAAYRELGIEAHGYVC 66 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH--HHHHHHHHHHHhcCCceEEEEc
Confidence 4577888888999999999889999877663321 1122233445666877766653
No 109
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=57.60 E-value=1.2e+02 Score=28.73 Aligned_cols=70 Identities=13% Similarity=0.050 Sum_probs=43.6
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~ 251 (439)
+.++|+.+++.-|.++|....+.|.+++++-.... +...+.++..|.++..+..+- +-.+.++.+++...
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~----~~~~~~~~~~~~~~~~~~~Dl-~~~~~~~~~~~~~~ 78 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA----PETQAQVEALGRKFHFITADL-IQQKDIDSIVSQAV 78 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH----HHHHHHHHHcCCeEEEEEeCC-CCHHHHHHHHHHHH
Confidence 45778888889999999999999999887643321 112234566787776554322 22334444544433
No 110
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=57.50 E-value=1.5e+02 Score=27.80 Aligned_cols=56 Identities=18% Similarity=0.070 Sum_probs=39.2
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
+.++|+.++|.-|.++|......|.+++++..... ....-.+.++..|.++..+..
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 63 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQD--GANAVADEINKAGGKAIGVAM 63 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChH--HHHHHHHHHHhcCceEEEEEC
Confidence 45778888899999999999999998776654421 122233446677888866553
No 111
>PRK12939 short chain dehydrogenase; Provisional
Probab=57.42 E-value=1.6e+02 Score=27.29 Aligned_cols=56 Identities=18% Similarity=0.144 Sum_probs=37.0
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
+.++++.++|.-|.++|....+.|.+++++... .+........++..|+++..+..
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~ 63 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGL--AAEARELAAALEAAGGRAHAIAA 63 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCC--HHHHHHHHHHHHhcCCcEEEEEc
Confidence 457788888999999999998999987666322 12122223345566777666543
No 112
>PRK12744 short chain dehydrogenase; Provisional
Probab=57.02 E-value=1.3e+02 Score=28.32 Aligned_cols=72 Identities=18% Similarity=0.143 Sum_probs=42.3
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecC--CchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA--QDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~--~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~ 249 (439)
+.++++.++|.-|.++|......|.+++++... ...+......+.++..|.++..+..+- +..+.+..+.+.
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~-~~~~~~~~~~~~ 82 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADL-TTAAAVEKLFDD 82 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCc-CCHHHHHHHHHH
Confidence 457788888889999999988899996666532 111112223344566687776554322 223344444443
No 113
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=55.98 E-value=1.6e+02 Score=27.82 Aligned_cols=72 Identities=14% Similarity=0.129 Sum_probs=43.8
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~ 252 (439)
+.++|+..+|.-|.++|......|.+++++..... .+...+.+...|.++..+...-. ..+.+..+++...+
T Consensus 16 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~D~~-~~~~i~~~~~~~~~ 87 (258)
T PRK06935 16 KVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTN---WDETRRLIEKEGRKVTFVQVDLT-KPESAEKVVKEALE 87 (258)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcH---HHHHHHHHHhcCCceEEEEcCCC-CHHHHHHHHHHHHH
Confidence 45778888888999999998889999888765421 12223345556777665543222 23344444444433
No 114
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=55.90 E-value=27 Score=31.15 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=26.5
Q ss_pred EecCcchHHHHHHHHHHHcCCeEEEEecCC
Q 013596 181 AETGAGQHGVATATVCARFGLQCIVYMGAQ 210 (439)
Q Consensus 181 v~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~ 210 (439)
..-++||.|.|+|...+..|.+++++.++.
T Consensus 3 ~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 3 AVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred EEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 346899999999999999999999998863
No 115
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=55.84 E-value=1.5e+02 Score=27.50 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=37.9
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEc
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~ 233 (439)
+.++|+.++|.-|.++|......|.+++++..... .+.......++..|.+++...
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 59 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNS-PRRVKWLEDQKALGFDFIASE 59 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCCh-HHHHHHHHHHHhcCCcEEEEE
Confidence 34678888899999999999999988766543222 112223445666788877554
No 116
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=55.51 E-value=1.4e+02 Score=28.25 Aligned_cols=72 Identities=13% Similarity=0.107 Sum_probs=40.9
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHH-HcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMR-LLGAEVRAVHSGTATLKDATSEAIRDW 250 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~-~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (439)
+.++|+.+++--|.++|......|.+++++..... +......+.++ ..|.++..+..+-.+ .+.++.+++..
T Consensus 9 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~ 81 (260)
T PRK08416 9 KTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNV-EEANKIAEDLEQKYGIKAKAYPLNILE-PETYKELFKKI 81 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCH-HHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHH
Confidence 45777888888999999999999999777654322 11111112232 356666655432222 34444444443
No 117
>PRK08862 short chain dehydrogenase; Provisional
Probab=55.26 E-value=1.6e+02 Score=27.64 Aligned_cols=55 Identities=15% Similarity=0.097 Sum_probs=36.4
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEc
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~ 233 (439)
+.++++..++.-|.++|......|.+++++-.. .+..+...+.++..|.+++.+.
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~--~~~l~~~~~~i~~~~~~~~~~~ 60 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILCDQD--QSALKDTYEQCSALTDNVYSFQ 60 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEEcCC--HHHHHHHHHHHHhcCCCeEEEE
Confidence 346677777778999999999999987665332 2222333455667787776554
No 118
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=55.17 E-value=1.6e+02 Score=27.35 Aligned_cols=69 Identities=10% Similarity=0.029 Sum_probs=42.2
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (439)
+.++++..+|.-|.++|......|.+++++-... .....+.++.++.++..+...- +..+....+++..
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~----~~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~~~ 74 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE----PSETQQQVEALGRRFLSLTADL-SDIEAIKALVDSA 74 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch----HHHHHHHHHhcCCceEEEECCC-CCHHHHHHHHHHH
Confidence 4577788788899999999999999877765432 1122344566777666554322 2233444444443
No 119
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=55.14 E-value=1.4e+02 Score=32.24 Aligned_cols=49 Identities=18% Similarity=0.211 Sum_probs=37.1
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 180 Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
++.-+.|..|.+.+..++.+|..++++-.. ..++++.+.+|++.+.++.
T Consensus 167 VlViGaG~iGl~Aa~~ak~lGA~V~v~d~~------~~rle~a~~lGa~~v~v~~ 215 (511)
T TIGR00561 167 VLVIGAGVAGLAAIGAANSLGAIVRAFDTR------PEVKEQVQSMGAEFLELDF 215 (511)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEeCC------HHHHHHHHHcCCeEEeccc
Confidence 445679999999999999999885554332 2356678889999977763
No 120
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=54.55 E-value=1.3e+02 Score=28.29 Aligned_cols=54 Identities=17% Similarity=0.116 Sum_probs=36.9
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEc
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~ 233 (439)
+.++|+.++|.-|.++|......|.+++++-.... .....+.++..|.++..+.
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~---~~~~~~~~~~~~~~~~~~~ 62 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL---VHEVAAELRAAGGEALALT 62 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH---HHHHHHHHHhcCCeEEEEE
Confidence 45778888889999999999999998776644321 1222334556687776554
No 121
>PRK06139 short chain dehydrogenase; Provisional
Probab=54.19 E-value=1.3e+02 Score=30.21 Aligned_cols=71 Identities=24% Similarity=0.197 Sum_probs=43.8
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (439)
+.++|+..+|--|.++|......|.+++++-... ++.+.-.+.++..|+++..+...- +..+.++.+.+..
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~--~~l~~~~~~~~~~g~~~~~~~~Dv-~d~~~v~~~~~~~ 78 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDE--EALQAVAEECRALGAEVLVVPTDV-TDADQVKALATQA 78 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCcEEEEEeeC-CCHHHHHHHHHHH
Confidence 4567777788899999999999999877665432 122223345677898876554321 2234444444443
No 122
>PRK05866 short chain dehydrogenase; Provisional
Probab=54.03 E-value=1.9e+02 Score=28.28 Aligned_cols=83 Identities=18% Similarity=0.181 Sum_probs=46.3
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVET 256 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~ 256 (439)
+.++|+.++|--|.++|......|.+++++-... ++.+...+.++..|.++..+...- +..+.+..+++...++..+
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~--~~l~~~~~~l~~~~~~~~~~~~Dl-~d~~~v~~~~~~~~~~~g~ 117 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARRE--DLLDAVADRITRAGGDAMAVPCDL-SDLDAVDALVADVEKRIGG 117 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCcEEEEEccC-CCHHHHHHHHHHHHHHcCC
Confidence 3577888888999999999888999877765442 112222334455576665554321 2233444454443333223
Q ss_pred ceEEec
Q 013596 257 THYILG 262 (439)
Q Consensus 257 ~~y~~~ 262 (439)
-.++++
T Consensus 118 id~li~ 123 (293)
T PRK05866 118 VDILIN 123 (293)
T ss_pred CCEEEE
Confidence 334443
No 123
>PRK08226 short chain dehydrogenase; Provisional
Probab=53.93 E-value=1.6e+02 Score=27.83 Aligned_cols=55 Identities=18% Similarity=0.061 Sum_probs=36.5
Q ss_pred CCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEc
Q 013596 176 KTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (439)
Q Consensus 176 ~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~ 233 (439)
.+.++|+.++|.-|.++|......|.+++++-.... .......+...|.++..+.
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~---~~~~~~~~~~~~~~~~~~~ 60 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARHGANLILLDISPE---IEKLADELCGRGHRCTAVV 60 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH---HHHHHHHHHHhCCceEEEE
Confidence 356788888999999999998889998776644321 1112233445577765554
No 124
>PTZ00323 NAD+ synthase; Provisional
Probab=53.22 E-value=1.8e+02 Score=29.17 Aligned_cols=64 Identities=13% Similarity=0.097 Sum_probs=41.8
Q ss_pred HHHhCCCeeEEecCcc-hHHHHHHHHHHHcCC-------eEEEEecCC-chhhHHHHHHHHHHcCCEEEEEcC
Q 013596 171 AKRLGKTRIIAETGAG-QHGVATATVCARFGL-------QCIVYMGAQ-DMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 171 a~~~g~~~~Vv~aSsG-NhG~AlA~aa~~~Gi-------~~~IvmP~~-~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
.++.|.+++|+.-|+| +....++.+.+.+|. -+.++||.. +......-....+.+|.+.+.++.
T Consensus 41 l~~~g~~~vVVglSGGVDSav~aaLa~~alg~~~~~~~~~~~v~~P~~ss~~~~~~A~~la~~lGi~~~~idi 113 (294)
T PTZ00323 41 MRRCGLKGCVTSVSGGIDSAVVLALCARAMRMPNSPIQKNVGLCQPIHSSAWALNRGRENIQACGATEVTVDQ 113 (294)
T ss_pred HHHcCCCcEEEECCCCHHHHHHHHHHHHHhccccCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEEC
Confidence 3344667788888888 677777776666764 244577853 222223334558899999988875
No 125
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=53.13 E-value=1.8e+02 Score=27.05 Aligned_cols=57 Identities=18% Similarity=0.102 Sum_probs=38.8
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
+.++++.++|.-|.++|......|.++++++..... ..+.-.+.++..|.++..+..
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~ 61 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRK-AAEETAEEIEALGRKALAVKA 61 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHH-HHHHHHHHHHhcCCeEEEEEc
Confidence 457788888999999999999999988775433221 112223446677888777653
No 126
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=52.99 E-value=2e+02 Score=27.07 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=38.3
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEc
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~ 233 (439)
+.++|+.++|.-|.++|......|.+++++...... ......+.++..|.++..+.
T Consensus 8 k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 63 (261)
T PRK08936 8 KVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEE-EANDVAEEIKKAGGEAIAVK 63 (261)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHH-HHHHHHHHHHHcCCeEEEEE
Confidence 457788888889999999999999988776554321 12223344566788876554
No 127
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=52.71 E-value=2e+02 Score=26.80 Aligned_cols=57 Identities=16% Similarity=0.120 Sum_probs=38.0
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
+.++|+.++|.-|.++|....+.|.++++..-... +........++..+.+++.+..
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 59 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGWSVGINYARDA-AAAEETADAVRAAGGRACVVAG 59 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCH-HHHHHHHHHHHhcCCcEEEEEe
Confidence 35778888889999999998889998776543221 1122234456667877766653
No 128
>PRK08589 short chain dehydrogenase; Validated
Probab=52.62 E-value=1.6e+02 Score=28.16 Aligned_cols=71 Identities=14% Similarity=0.104 Sum_probs=42.8
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~ 251 (439)
+.++|+.+++--|.++|......|.+++++-.. . ......+.++..|.++..+...- +-.+.+..+.+...
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~--~~~~~~~~~~~~~~~~~~~~~Dl-~~~~~~~~~~~~~~ 77 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIA-E--AVSETVDKIKSNGGKAKAYHVDI-SDEQQVKDFASEIK 77 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-H--HHHHHHHHHHhcCCeEEEEEeec-CCHHHHHHHHHHHH
Confidence 456778878888999999888899988877544 2 12223444566676665554321 22334444444433
No 129
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=52.12 E-value=69 Score=33.14 Aligned_cols=32 Identities=34% Similarity=0.481 Sum_probs=27.6
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEecCCc
Q 013596 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQD 211 (439)
Q Consensus 180 Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~ 211 (439)
|-.-++|+.|.-+|.+|+++|++++|+=|..+
T Consensus 4 vgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~ 35 (375)
T COG0026 4 VGILGGGQLGRMMALAAARLGIKVIVLDPDAD 35 (375)
T ss_pred EEEEcCcHHHHHHHHHHHhcCCEEEEecCCCC
Confidence 33347999999999999999999999998743
No 130
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.92 E-value=1.8e+02 Score=26.98 Aligned_cols=56 Identities=18% Similarity=0.098 Sum_probs=37.9
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEc
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~ 233 (439)
+.++++.++|--|.++|......|.++++..-... .........++..|.++..+.
T Consensus 7 ~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 62 (252)
T PRK06077 7 KVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRA-EEMNETLKMVKENGGEGIGVL 62 (252)
T ss_pred cEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCh-HHHHHHHHHHHHcCCeeEEEE
Confidence 45778888888999999988889998766553222 112333455677787776554
No 131
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=51.84 E-value=2e+02 Score=26.74 Aligned_cols=71 Identities=20% Similarity=0.100 Sum_probs=42.9
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~ 251 (439)
..+++.++|--|.++|......|.+++++-... .+.....+.++..|.++..+...- +..+.+..+++...
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl-~~~~~i~~~~~~~~ 72 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGFAVAVADLNE--ETAKETAKEINQAGGKAVAYKLDV-SDKDQVFSAIDQAA 72 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCeEEEEEcCC-CCHHHHHHHHHHHH
Confidence 467778889999999999889999866654332 112223344666787776654321 22344444444433
No 132
>PRK06114 short chain dehydrogenase; Provisional
Probab=51.71 E-value=1.9e+02 Score=27.17 Aligned_cols=71 Identities=14% Similarity=0.061 Sum_probs=42.9
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~ 249 (439)
+..+|+.++|--|.++|......|.++++........ ...-.+.++..|.++..+...- +-.+.+.++++.
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~-~~~~~~~l~~~~~~~~~~~~D~-~~~~~i~~~~~~ 79 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDG-LAETAEHIEAAGRRAIQIAADV-TSKADLRAAVAR 79 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchH-HHHHHHHHHhcCCceEEEEcCC-CCHHHHHHHHHH
Confidence 4567888888899999999888999888776542211 1222344666677766554321 223344444444
No 133
>PRK05370 argininosuccinate synthase; Validated
Probab=51.54 E-value=2.3e+02 Score=30.16 Aligned_cols=134 Identities=16% Similarity=0.120 Sum_probs=71.4
Q ss_pred CCCeeEEecCcc-hHHHHHHHHHHHcCCeEEEEecCC-c--hhhHHHHHHHHHHcCC-EEEEEcCCCCCHH-HHHHHHHH
Q 013596 175 GKTRIIAETGAG-QHGVATATVCARFGLQCIVYMGAQ-D--MERQALNVFRMRLLGA-EVRAVHSGTATLK-DATSEAIR 248 (439)
Q Consensus 175 g~~~~Vv~aSsG-NhG~AlA~aa~~~Gi~~~IvmP~~-~--~~~~~~k~~~m~~~GA-~Vv~v~~~~~~~~-da~~~a~~ 248 (439)
..+++++.+|+| ++-+.+-|.-.. |++++.|.-+. . .+....-.++...+|| +++.++-- +.|- +.+ .+++
T Consensus 10 ~~~KVvLAYSGGLDTSv~l~wL~e~-~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr-~eF~e~~i-~aI~ 86 (447)
T PRK05370 10 VGQRVGIAFSGGLDTSAALLWMRQK-GAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCR-AQLVAEGI-AAIQ 86 (447)
T ss_pred CCCEEEEEecCCchHHHHHHHHHhc-CCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccH-HHHHHHHH-HHHH
Confidence 456788999998 788888888766 99988877431 1 1112233445778999 67777542 2222 222 2222
Q ss_pred HHHHcc-----CCceEEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHH-HHHHHHHHh-cCC
Q 013596 249 DWVTNV-----ETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSN-AMGLFHEFV-NDK 321 (439)
Q Consensus 249 ~~~~~~-----~~~~y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~-~aGi~~~~~-~~p 321 (439)
.+. ++..|.++. + .....|+..+++ +.++.+ .++|.-.+-|-|| ..-.=.+++ ..|
T Consensus 87 ---anA~Y~~~~e~~Y~l~t-----~------LaRplia~~lv~-~A~~~g--a~aIAHG~TGKGNDQvRFE~~~~aL~P 149 (447)
T PRK05370 87 ---CGAFHISTGGVTYFNTT-----P------LGRAVTGTMLVA-AMKEDG--VNIWGDGSTYKGNDIERFYRYGLLTNP 149 (447)
T ss_pred ---cCCccccccCccccCCC-----c------chHHHHHHHHHH-HHHHhC--CcEEEEcCCCCCCchHHHHHHHHHhCC
Confidence 221 022354321 1 122233344332 223343 6777765544444 344444444 578
Q ss_pred CcEEEEE
Q 013596 322 DVRLIGV 328 (439)
Q Consensus 322 ~vrvigV 328 (439)
+.+||+=
T Consensus 150 ~l~ViaP 156 (447)
T PRK05370 150 ELKIYKP 156 (447)
T ss_pred CCeEecc
Confidence 8888764
No 134
>PRK07478 short chain dehydrogenase; Provisional
Probab=51.31 E-value=1.6e+02 Score=27.65 Aligned_cols=73 Identities=21% Similarity=0.116 Sum_probs=43.6
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~ 252 (439)
+.++++.++|--|.++|......|.+++++..... ....-...++..|.++..+...-. -.+....+++...+
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~ 79 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQA--ELDQLVAEIRAEGGEAVALAGDVR-DEAYAKALVALAVE 79 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCcEEEEEcCCC-CHHHHHHHHHHHHH
Confidence 35678888888999999998889998776653311 122223345667777766643222 23344444444333
No 135
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=51.26 E-value=1.1e+02 Score=30.23 Aligned_cols=49 Identities=14% Similarity=0.151 Sum_probs=34.5
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHH-cCCEEEE
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRL-LGAEVRA 231 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~-~GA~Vv~ 231 (439)
+.+++...+|.-|.++.-.|+.+|.++++.... ..|.+.++. +|++-+.
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~------~~~~~~~~~~lGa~~vi 202 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGS------DEKVDLLKNKLGFDDAF 202 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHHhcCCceeE
Confidence 345565556999999999999999986554433 235566777 9996543
No 136
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=51.18 E-value=1.3e+02 Score=29.37 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=35.0
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAV 232 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v 232 (439)
.+++...+|.-|.++.-.|+.+|++++++... ..|.+.++.+|++-+.-
T Consensus 146 ~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s------~~~~~~l~~~Ga~~vi~ 194 (329)
T cd08294 146 TVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGS------DDKVAWLKELGFDAVFN 194 (329)
T ss_pred EEEEecCccHHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHHcCCCEEEe
Confidence 45565557899999998999999986555432 33666788899965543
No 137
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=51.12 E-value=2.9e+02 Score=28.95 Aligned_cols=111 Identities=14% Similarity=0.125 Sum_probs=55.8
Q ss_pred CCCCCCchhhhHHHHHHHHHHHh-----CCCeeEEecCcchHHHH--HHHHHHHcCCeEEEEecCCch-hh---------
Q 013596 152 DLNHTGAHKINNAVGQALLAKRL-----GKTRIIAETGAGQHGVA--TATVCARFGLQCIVYMGAQDM-ER--------- 214 (439)
Q Consensus 152 ~~npTGSfK~Rga~~~~~~a~~~-----g~~~~Vv~aSsGNhG~A--lA~aa~~~Gi~~~IvmP~~~~-~~--------- 214 (439)
+-+|.|-. +.+..++...+.. |.+.++|+.+|+..|.| +|.+. ..|.+++++.-.... ..
T Consensus 14 ~~hp~gc~--~~v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~ 90 (398)
T PRK13656 14 TAHPVGCE--ANVKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYN 90 (398)
T ss_pred CCCCHHHH--HHHHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccch
Confidence 34455532 2445566555543 34566777777777777 56666 789887776522111 10
Q ss_pred HHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCC
Q 013596 215 QALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAG 266 (439)
Q Consensus 215 ~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~ 266 (439)
...-.+.++.+|..+..+.. +.+-.+..+.+++...++..+-..++++...
T Consensus 91 ~~a~~~~a~~~G~~a~~i~~-DVss~E~v~~lie~I~e~~G~IDiLVnSaA~ 141 (398)
T PRK13656 91 SAAFDKFAKAAGLYAKSING-DAFSDEIKQKVIELIKQDLGQVDLVVYSLAS 141 (398)
T ss_pred HHHHHHHHHhcCCceEEEEc-CCCCHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 01112345667876554432 1233445555555544433333445544443
No 138
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=50.44 E-value=2.1e+02 Score=26.88 Aligned_cols=54 Identities=11% Similarity=0.033 Sum_probs=36.9
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
+..+++.++|.-|.++|......|.+++++-... .....+.++.+|.++..+..
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~----~~~~~~~~~~~~~~~~~~~~ 64 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVE----PTETIEQVTALGRRFLSLTA 64 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEecCcc----hHHHHHHHHhcCCeEEEEEC
Confidence 4578888899999999999999999877653221 12233445566777766553
No 139
>PRK06194 hypothetical protein; Provisional
Probab=50.25 E-value=2.2e+02 Score=27.21 Aligned_cols=56 Identities=25% Similarity=0.289 Sum_probs=37.2
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
+.++|+.++|.-|.++|......|.+++++-... +........+...|.+++.+..
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~ 62 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQ--DALDRAVAELRAQGAEVLGVRT 62 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCCh--HHHHHHHHHHHhcCCeEEEEEC
Confidence 4577888888999999998888999876664321 1122233345555778766653
No 140
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=49.94 E-value=2e+02 Score=26.01 Aligned_cols=70 Identities=20% Similarity=0.259 Sum_probs=43.3
Q ss_pred eEEecCcchHHHHHHHHHHHcCCeEEEEecCC-c-hhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHH
Q 013596 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQ-D-MERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (439)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~-~-~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~ 249 (439)
.+++.+.|..|..+|..-...|-.-+|++... . .......++.++..|++|..+..+- +-.+.+..+++.
T Consensus 3 ylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv-~d~~~v~~~~~~ 74 (181)
T PF08659_consen 3 YLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDV-TDPEAVAAALAQ 74 (181)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--T-TSHHHHHHHHHT
T ss_pred EEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCc-cCHHHHHHHHHH
Confidence 46778889999999988777666555555543 1 1123446788999999999886532 223445555544
No 141
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=49.79 E-value=1.1e+02 Score=25.71 Aligned_cols=78 Identities=14% Similarity=0.066 Sum_probs=46.3
Q ss_pred HHHHHHHHHhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHH
Q 013596 165 VGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATS 244 (439)
Q Consensus 165 ~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~ 244 (439)
......+.+.+.+.+|+-+.+|+++..+|. .+-..+.+++.|... .-.+..-.+|..-+.++....+.++...
T Consensus 6 ~aa~~~A~~~~ak~Ivv~T~sG~ta~~isk--~RP~~pIiavt~~~~-----~~r~l~l~~GV~p~~~~~~~~~~~~~~~ 78 (117)
T PF02887_consen 6 RAAVELAEDLNAKAIVVFTESGRTARLISK--YRPKVPIIAVTPNES-----VARQLSLYWGVYPVLIEEFDKDTEELIA 78 (117)
T ss_dssp HHHHHHHHHHTESEEEEE-SSSHHHHHHHH--T-TSSEEEEEESSHH-----HHHHGGGSTTEEEEECSSHSHSHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCchHHHHHHh--hCCCCeEEEEcCcHH-----HHhhhhcccceEEEEeccccccHHHHHH
Confidence 344556677787888888889998888754 345688888887733 2222234567776666543224455554
Q ss_pred HHHHH
Q 013596 245 EAIRD 249 (439)
Q Consensus 245 ~a~~~ 249 (439)
.+.+.
T Consensus 79 ~a~~~ 83 (117)
T PF02887_consen 79 EALEY 83 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 142
>PRK07035 short chain dehydrogenase; Provisional
Probab=49.73 E-value=2.1e+02 Score=26.78 Aligned_cols=82 Identities=12% Similarity=0.071 Sum_probs=46.3
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVET 256 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~ 256 (439)
+.++|+.++|.-|.+++....+.|.+++++-.... ......+.+...|.++..+...-.+. +.++.+++...+...+
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~~~~ 85 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLD--GCQAVADAIVAAGGKAEALACHIGEM-EQIDALFAHIRERHGR 85 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEEcCCCCH-HHHHHHHHHHHHHcCC
Confidence 45778888889999999999999998777754321 12222333455676665554322222 3344444443333223
Q ss_pred ceEEe
Q 013596 257 THYIL 261 (439)
Q Consensus 257 ~~y~~ 261 (439)
-.+++
T Consensus 86 id~li 90 (252)
T PRK07035 86 LDILV 90 (252)
T ss_pred CCEEE
Confidence 33444
No 143
>PRK05693 short chain dehydrogenase; Provisional
Probab=49.33 E-value=2.2e+02 Score=27.19 Aligned_cols=51 Identities=12% Similarity=0.042 Sum_probs=35.8
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
.++|+.++|--|.++|......|.+++++.... .+.+.+...|.+.+.++.
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~~------~~~~~~~~~~~~~~~~Dl 53 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARKA------EDVEALAAAGFTAVQLDV 53 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCH------HHHHHHHHCCCeEEEeeC
Confidence 467888888999999999888999877765431 223344556777666654
No 144
>PRK07454 short chain dehydrogenase; Provisional
Probab=48.96 E-value=1.8e+02 Score=27.04 Aligned_cols=55 Identities=22% Similarity=0.201 Sum_probs=35.9
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEc
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~ 233 (439)
+.++++.++|.-|.++|......|.+++++...... ...-...++..+.++..+.
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~ 61 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGWDLALVARSQDA--LEALAAELRSTGVKAAAYS 61 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHHHhCCCcEEEEE
Confidence 456778888999999999999999987776643211 1111223445566665554
No 145
>PRK05867 short chain dehydrogenase; Provisional
Probab=48.94 E-value=2.2e+02 Score=26.74 Aligned_cols=71 Identities=11% Similarity=0.069 Sum_probs=42.1
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (439)
+.++|+.++|.-|.++|......|.+++++-... +..+.-.+.++..|.++..+...- +-.+.++++++..
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~-~~~~~~~~~~~~~ 80 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHL--DALEKLADEIGTSGGKVVPVCCDV-SQHQQVTSMLDQV 80 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH--HHHHHHHHHHHhcCCeEEEEEccC-CCHHHHHHHHHHH
Confidence 4567788788899999999888999876654321 112222344556677776554321 2234444444443
No 146
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.87 E-value=2.1e+02 Score=26.88 Aligned_cols=67 Identities=16% Similarity=0.135 Sum_probs=41.1
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~ 251 (439)
+.++|+.++|--|.++|......|.+++++..... .+.+.++..+...+.++.. + .+....+++...
T Consensus 8 k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~-----~~~~~l~~~~~~~~~~Dl~--~-~~~~~~~~~~~~ 74 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAE-----NEAKELREKGVFTIKCDVG--N-RDQVKKSKEVVE 74 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcH-----HHHHHHHhCCCeEEEecCC--C-HHHHHHHHHHHH
Confidence 45678888889999999998889998776653321 1223344446666666542 2 334444444433
No 147
>PRK06181 short chain dehydrogenase; Provisional
Probab=48.67 E-value=2.1e+02 Score=26.87 Aligned_cols=70 Identities=21% Similarity=0.135 Sum_probs=42.2
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (439)
.++|+.++|.-|.+++......|.+++++..... ......+.++..|.++..+...- +-.+....+++..
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~--~~~~~~~~l~~~~~~~~~~~~Dl-~~~~~~~~~~~~~ 72 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNET--RLASLAQELADHGGEALVVPTDV-SDAEACERLIEAA 72 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCcEEEEEccC-CCHHHHHHHHHHH
Confidence 4677888889999999998889998777664421 11222334556677776554321 2233444444443
No 148
>PRK07832 short chain dehydrogenase; Provisional
Probab=48.48 E-value=1.3e+02 Score=28.79 Aligned_cols=50 Identities=30% Similarity=0.224 Sum_probs=33.2
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~V 229 (439)
.++|+.++|--|.++|......|.+++++-...+ ........++..|+++
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~--~~~~~~~~~~~~~~~~ 51 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDAD--GLAQTVADARALGGTV 51 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCCc
Confidence 4677888889999999999999998766644321 1122234456667654
No 149
>PRK08303 short chain dehydrogenase; Provisional
Probab=48.43 E-value=2e+02 Score=28.49 Aligned_cols=75 Identities=11% Similarity=-0.015 Sum_probs=43.1
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCc--------hhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQD--------MERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIR 248 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~--------~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~ 248 (439)
+.++|+.+++--|.++|......|.+++++-.... .++.....+.++..|.+++.+...-.+ .+.++.+++
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~-~~~v~~~~~ 87 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLV-PEQVRALVE 87 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHH
Confidence 45677777778899999888889998777654311 111222334566778777655432222 333444444
Q ss_pred HHHH
Q 013596 249 DWVT 252 (439)
Q Consensus 249 ~~~~ 252 (439)
...+
T Consensus 88 ~~~~ 91 (305)
T PRK08303 88 RIDR 91 (305)
T ss_pred HHHH
Confidence 4333
No 150
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=48.34 E-value=2.1e+02 Score=25.88 Aligned_cols=103 Identities=20% Similarity=0.284 Sum_probs=59.7
Q ss_pred eEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCce
Q 013596 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTH 258 (439)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~ 258 (439)
+|..-+.|+-|+++|..++.+|.+++.+=|..... . .....|.+. .++++...+ ..
T Consensus 38 tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~---~---~~~~~~~~~-------~~l~ell~~-----------aD 93 (178)
T PF02826_consen 38 TVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPE---E---GADEFGVEY-------VSLDELLAQ-----------AD 93 (178)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHH---H---HHHHTTEEE-------SSHHHHHHH------------S
T ss_pred EEEEEEEcCCcCeEeeeeecCCceeEEecccCChh---h---hccccccee-------eehhhhcch-----------hh
Confidence 44445899999999999999999999998875421 1 133444422 134433221 12
Q ss_pred EEecccCCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHH--HHHHHHHh
Q 013596 259 YILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNA--MGLFHEFV 318 (439)
Q Consensus 259 y~~~s~~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~--aGi~~~~~ 318 (439)
++.... |... .-+..++.+...+ + +++.+++-+|-|+.+ ..+..+++
T Consensus 94 iv~~~~----plt~---~T~~li~~~~l~~----m--k~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 94 IVSLHL----PLTP---ETRGLINAEFLAK----M--KPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp EEEE-S----SSST---TTTTSBSHHHHHT----S--TTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred hhhhhh----cccc---ccceeeeeeeeec----c--ccceEEEeccchhhhhhhHHHHHHh
Confidence 332211 1110 2333455555444 3 479999999999987 55555554
No 151
>PRK06483 dihydromonapterin reductase; Provisional
Probab=48.06 E-value=2.3e+02 Score=26.21 Aligned_cols=52 Identities=19% Similarity=0.130 Sum_probs=36.6
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
.++++.++|--|.++|......|.+++++-.... + ..+.++..|++.+.++.
T Consensus 4 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~-~~~~~~~~~~~~~~~D~ 55 (236)
T PRK06483 4 PILITGAGQRIGLALAWHLLAQGQPVIVSYRTHY----P-AIDGLRQAGAQCIQADF 55 (236)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCeEEEEeCCch----h-HHHHHHHcCCEEEEcCC
Confidence 5678888889999999998889998877654322 1 12345567877777654
No 152
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.00 E-value=2.3e+02 Score=26.24 Aligned_cols=70 Identities=13% Similarity=0.119 Sum_probs=42.3
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~ 249 (439)
+.++|+.++|..|.+++......|.+++++..... ....-...++..|.+++.+...- +-.+....+++.
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~~ 77 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEE--NLKAVAEEVEAYGVKVVIATADV-SDYEEVTAAIEQ 77 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHHhCCeEEEEECCC-CCHHHHHHHHHH
Confidence 45778888889999999988889998777654321 11222233456677776665322 223344444443
No 153
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=47.36 E-value=77 Score=31.79 Aligned_cols=47 Identities=17% Similarity=0.192 Sum_probs=35.9
Q ss_pred chHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEc
Q 013596 186 GQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (439)
Q Consensus 186 GNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~ 233 (439)
+|.+.++..+++++|++++++-|+.-.. +..-++.++..|++|...+
T Consensus 162 ~~v~~Sl~~~~a~~g~~v~~~~P~~~~~-~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 162 GRTVHSLAEALTRFGVEVYLISPEELRM-PKEILEELKAKGIKVRETE 208 (301)
T ss_pred CcHHHHHHHHHHHcCCEEEEECCccccC-CHHHHHHHHHcCCEEEEEC
Confidence 5899999999999999999999986311 2233455667899987764
No 154
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=47.35 E-value=2.4e+02 Score=26.28 Aligned_cols=57 Identities=23% Similarity=0.222 Sum_probs=37.7
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
+.++++.++|.-|.++|......|.+++++....... .....+.++..+.++..+..
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~ 59 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEE-LAATQQELRALGVEVIFFPA 59 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhH-HHHHHHHHHhcCCceEEEEe
Confidence 3467888889999999999888899887766432211 12233445566777666543
No 155
>PRK07985 oxidoreductase; Provisional
Probab=47.28 E-value=2.8e+02 Score=27.02 Aligned_cols=74 Identities=12% Similarity=0.047 Sum_probs=42.7
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~ 251 (439)
+.++|+.++|.-|.++|......|.+++++......+..+.-.+.++..|.+++.+... -+-.+.+..+++...
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-l~~~~~~~~~~~~~~ 123 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGD-LSDEKFARSLVHEAH 123 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEcc-CCCHHHHHHHHHHHH
Confidence 45778888889999999999999999877543222111111122345567776555432 122344444444433
No 156
>PRK05993 short chain dehydrogenase; Provisional
Probab=47.22 E-value=2.7e+02 Score=26.72 Aligned_cols=51 Identities=14% Similarity=0.080 Sum_probs=36.6
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
.++++.++|.-|.++|......|.+++++.... .+.+.++..|.+++.++.
T Consensus 6 ~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~------~~~~~l~~~~~~~~~~Dl 56 (277)
T PRK05993 6 SILITGCSSGIGAYCARALQSDGWRVFATCRKE------EDVAALEAEGLEAFQLDY 56 (277)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH------HHHHHHHHCCceEEEccC
Confidence 567888889999999999888999887765431 233345556777776654
No 157
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=47.00 E-value=3.9e+02 Score=28.95 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=36.7
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEc
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~ 233 (439)
..|+..++|.-|.+.+.+|+.+|-++++ +.. ...++++.+.+||+.+.++
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a-~D~-----~~~rle~aeslGA~~v~i~ 215 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRA-FDT-----RPEVAEQVESMGAEFLELD 215 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEE-EeC-----CHHHHHHHHHcCCeEEEec
Confidence 3455678999999999999999986333 322 2446777899999966554
No 158
>PRK05717 oxidoreductase; Validated
Probab=46.00 E-value=2.5e+02 Score=26.35 Aligned_cols=52 Identities=13% Similarity=0.065 Sum_probs=34.2
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEc
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~ 233 (439)
+.++++.++|.-|.++|......|.+++++-.... ...+..+.++.+++.+.
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~ 62 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRE-----RGSKVAKALGENAWFIA 62 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHH-----HHHHHHHHcCCceEEEE
Confidence 45778888899999999999889988777643211 11122444566665554
No 159
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=45.98 E-value=93 Score=28.78 Aligned_cols=64 Identities=22% Similarity=0.097 Sum_probs=42.9
Q ss_pred HHHHHHHhCCCeeEEecCcchHHHH-HHHHHHHcCCeEEEEecCC---chhhHHHHHHHHHHcCCEEE
Q 013596 167 QALLAKRLGKTRIIAETGAGQHGVA-TATVCARFGLQCIVYMGAQ---DMERQALNVFRMRLLGAEVR 230 (439)
Q Consensus 167 ~~~~a~~~g~~~~Vv~aSsGNhG~A-lA~aa~~~Gi~~~IvmP~~---~~~~~~~k~~~m~~~GA~Vv 230 (439)
+...+++.+.+.+|++.-..|+++. .|..+...|++++|+.... +.+.....++.|+..|++|+
T Consensus 129 L~~~L~~~~i~~lii~G~~t~~CV~~T~~~a~~~g~~v~v~~Da~~~~~~~~~~~al~~~~~~G~~i~ 196 (196)
T cd01011 129 LAEYLRERGIDRVDVVGLATDYCVKATALDALKAGFEVRVLEDACRAVDPETIERAIEEMKEAGVVLV 196 (196)
T ss_pred HHHHHHHCCCCEEEEEEecccHHHHHHHHHHHHCCCEEEEeccccCCCCHHHHHHHHHHHHHccCEEC
Confidence 3344556688888887777777764 4455777899988887652 22334456777888888874
No 160
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=45.78 E-value=2.4e+02 Score=26.12 Aligned_cols=72 Identities=21% Similarity=0.196 Sum_probs=42.8
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~ 251 (439)
+.++++.++|.-|.++|......|.+++++....+ ..+.-...++..+.++..+...- ...+.+..+.+.+.
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~~ 75 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNRE--AAEKVAADIRAKGGNAQAFACDI-TDRDSVDTAVAAAE 75 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH--HHHHHHHHHHhcCCcEEEEEcCC-CCHHHHHHHHHHHH
Confidence 45678888899999999998889998777654321 11112233455576666555422 22334444444433
No 161
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=45.53 E-value=66 Score=31.15 Aligned_cols=47 Identities=23% Similarity=0.198 Sum_probs=33.1
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEE
Q 013596 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 180 Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
|+..++|.-|..++..++.+|.+.++++.. + ..|.+..+.+|++.+.
T Consensus 124 VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~-~----~~r~~~a~~~Ga~~~i 170 (280)
T TIGR03366 124 VLVVGAGMLGLTAAAAAAAAGAARVVAADP-S----PDRRELALSFGATALA 170 (280)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCEEEEECC-C----HHHHHHHHHcCCcEec
Confidence 334467899999999999999985555532 2 3456668889986544
No 162
>PRK08643 acetoin reductase; Validated
Probab=45.44 E-value=2.4e+02 Score=26.34 Aligned_cols=70 Identities=14% Similarity=0.118 Sum_probs=41.6
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (439)
.++++.++|.-|.++|......|.+++++-.... +...-...++..|.++..+...- +-.+.+.++++..
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~Dl-~~~~~~~~~~~~~ 73 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEE--TAQAAADKLSKDGGKAIAVKADV-SDRDQVFAAVRQV 73 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEECCC-CCHHHHHHHHHHH
Confidence 4677888889999999999899998766653321 11111223455677776665322 2233444444443
No 163
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=45.28 E-value=2.5e+02 Score=25.88 Aligned_cols=70 Identities=14% Similarity=0.079 Sum_probs=42.4
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHH
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~ 249 (439)
.++++.++|.-|.+++......|.+++++..... +........++.+|.++..+...-. ..+.+..+++.
T Consensus 3 ~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~-d~~~i~~~~~~ 72 (247)
T PRK09730 3 IALVTGGSRGIGRATALLLAQEGYTVAVNYQQNL-HAAQEVVNLITQAGGKAFVLQADIS-DENQVVAMFTA 72 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCh-HHHHHHHHHHHhCCCeEEEEEccCC-CHHHHHHHHHH
Confidence 4678888889999999998889998777554322 2222233345666777665543222 23344444444
No 164
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=45.17 E-value=1.6e+02 Score=29.59 Aligned_cols=48 Identities=15% Similarity=0.208 Sum_probs=33.1
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHH-HcCCEEEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMR-LLGAEVRA 231 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~-~~GA~Vv~ 231 (439)
.+++...+|--|.++...|+.+|.++++.... ..|.+.++ .+|++.+.
T Consensus 161 ~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~------~~k~~~~~~~lGa~~vi 209 (348)
T PLN03154 161 SVFVSAASGAVGQLVGQLAKLHGCYVVGSAGS------SQKVDLLKNKLGFDEAF 209 (348)
T ss_pred EEEEecCccHHHHHHHHHHHHcCCEEEEEcCC------HHHHHHHHHhcCCCEEE
Confidence 45555556899999998999999985544332 23555666 79997654
No 165
>PRK05876 short chain dehydrogenase; Provisional
Probab=45.05 E-value=2.3e+02 Score=27.27 Aligned_cols=56 Identities=25% Similarity=0.228 Sum_probs=36.4
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
+.++|+.++|--|.++|......|.+++++.-.. +....-.+.++..|.++..+..
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~--~~l~~~~~~l~~~~~~~~~~~~ 62 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVLGDVDK--PGLRQAVNHLRAEGFDVHGVMC 62 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCeEEEEeC
Confidence 4577888888899999999889999866654321 1112223345666877765543
No 166
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=45.00 E-value=1.1e+02 Score=30.72 Aligned_cols=56 Identities=5% Similarity=-0.018 Sum_probs=37.9
Q ss_pred eEEecCcchHHHHHHHHHHHcCCeEEEEecCCchh---hHHHHHHHHHHcCCEEEEEcC
Q 013596 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDME---RQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~---~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
++...-+.|-+.++-.+|+++|++++|..|++-.. ....-.+..+..|++|..++.
T Consensus 156 ~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d 214 (310)
T COG0078 156 LAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTED 214 (310)
T ss_pred EEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecC
Confidence 33333334899999999999999999999986321 111222233555999998753
No 167
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=44.92 E-value=2.5e+02 Score=25.73 Aligned_cols=57 Identities=23% Similarity=0.191 Sum_probs=37.9
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
++++++.++|.-|.+++......|.+++++....... ...-.+.++..+.++..+..
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 63 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEA-AEELVEAVEALGRRAQAVQA 63 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHHHhcCCceEEEEC
Confidence 3578888899999999999999999987766553321 11122334455666666543
No 168
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=44.92 E-value=2.5e+02 Score=25.76 Aligned_cols=57 Identities=18% Similarity=0.173 Sum_probs=38.2
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
+.++++.++|.-|.+++....+.|.+++++.-.... ......+.++..+.++..+..
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 62 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQGANVVINYASSEA-GAEALVAEIGALGGKALAVQG 62 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHHHHhcCCceEEEEc
Confidence 457788889999999999988889987666543221 111223345556778777754
No 169
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=44.89 E-value=1.6e+02 Score=26.78 Aligned_cols=102 Identities=14% Similarity=0.078 Sum_probs=53.1
Q ss_pred HHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCC
Q 013596 189 GVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPH 268 (439)
Q Consensus 189 G~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~ 268 (439)
|..+.++++.+|.+..--++..+. -..-.+.+...|..|..+.... +..+.+.+.+.++.. ..-+.+.. |
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl--~~~ll~~~~~~~~~v~llG~~~----~~~~~~~~~l~~~yp-~l~i~g~~---~ 80 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDL--MPALLELAAQKGLRVFLLGAKP----EVLEKAAERLRARYP-GLKIVGYH---H 80 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHH--HHHHHHHHHHcCCeEEEECCCH----HHHHHHHHHHHHHCC-CcEEEEec---C
Confidence 478889999999884444444332 1223344556688999997532 333333333333222 22232222 3
Q ss_pred CcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHH
Q 013596 269 PYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSN 309 (439)
Q Consensus 269 p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~ 309 (439)
+|.. ...-.++..+| .+. .||.|+++.|.---
T Consensus 81 g~~~------~~~~~~i~~~I-~~~--~pdiv~vglG~PkQ 112 (171)
T cd06533 81 GYFG------PEEEEEIIERI-NAS--GADILFVGLGAPKQ 112 (171)
T ss_pred CCCC------hhhHHHHHHHH-HHc--CCCEEEEECCCCHH
Confidence 3311 00112344555 223 58999999987653
No 170
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=44.78 E-value=2.6e+02 Score=25.96 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=37.9
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
+.++++.++|.-|.++|..-...|.+++++...... .......++..|.++..+..
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~ 60 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEA--AAAAAEALQKAGGKAIGVAM 60 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHH--HHHHHHHHHhcCCcEEEEEc
Confidence 457788889999999999988889988777654221 12222345556777765543
No 171
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=44.77 E-value=2.5e+02 Score=25.76 Aligned_cols=55 Identities=18% Similarity=0.218 Sum_probs=37.5
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEc
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~ 233 (439)
++++++..+|.-|..++......|.+++++..... +...-...++..|.++..+.
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~ 60 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEE--AAEALAAELRAAGGEARVLV 60 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChh--HHHHHHHHHHhcCCceEEEE
Confidence 45788888999999999998889999655554322 11222334556788777754
No 172
>PRK07890 short chain dehydrogenase; Provisional
Probab=44.51 E-value=2.7e+02 Score=25.99 Aligned_cols=56 Identities=20% Similarity=0.156 Sum_probs=37.0
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
+.++|+.++|--|.++|......|.+++++.... +..+.-...++..|.++..+..
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~ 61 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTA--ERLDEVAAEIDDLGRRALAVPT 61 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHHHHhCCceEEEec
Confidence 4577888888999999999999999877765432 1112222334555776655543
No 173
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=44.22 E-value=2.1e+02 Score=27.18 Aligned_cols=75 Identities=8% Similarity=-0.093 Sum_probs=38.5
Q ss_pred CeeEEecCc--chHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 013596 177 TRIIAETGA--GQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (439)
Q Consensus 177 ~~~Vv~aSs--GNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~ 252 (439)
+.++|+.++ +--|.++|....+.|.++++..-.....+...+++.++..+.+++.+..+ -+-.+.++.+++...+
T Consensus 7 k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-l~d~~~v~~~~~~~~~ 83 (258)
T PRK07370 7 KKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCD-VQDDAQIEETFETIKQ 83 (258)
T ss_pred cEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecC-cCCHHHHHHHHHHHHH
Confidence 345566543 46888888888889999876542111112233444555555444433321 1223444445554433
No 174
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=44.16 E-value=2.4e+02 Score=26.65 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=25.8
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEe
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYM 207 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~Ivm 207 (439)
+.++++.++|.-|.++|......|.+++++-
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~ 36 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLD 36 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 4577888888999999999999999877663
No 175
>PRK07791 short chain dehydrogenase; Provisional
Probab=43.99 E-value=2.8e+02 Score=26.85 Aligned_cols=75 Identities=20% Similarity=0.099 Sum_probs=43.3
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCC-------chhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQ-------DMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~-------~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~ 249 (439)
+.++|+.+++--|.++|......|.+++++--.. ..+......+.++..|.++..+...-.+ .+.+..+++.
T Consensus 7 k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~-~~~v~~~~~~ 85 (286)
T PRK07791 7 RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIAD-WDGAANLVDA 85 (286)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCC-HHHHHHHHHH
Confidence 4567788788889999998888999877764221 0011222334456668777665432222 3334445444
Q ss_pred HHH
Q 013596 250 WVT 252 (439)
Q Consensus 250 ~~~ 252 (439)
..+
T Consensus 86 ~~~ 88 (286)
T PRK07791 86 AVE 88 (286)
T ss_pred HHH
Confidence 433
No 176
>PRK07806 short chain dehydrogenase; Provisional
Probab=43.96 E-value=2.7e+02 Score=25.85 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=36.9
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
+.++++.++|.-|.+++......|.+++++...... ....-...++..|.++..+..
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~-~~~~~~~~l~~~~~~~~~~~~ 63 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAP-RANKVVAEIEAAGGRASAVGA 63 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchH-hHHHHHHHHHhcCCceEEEEc
Confidence 457788888999999999988899998776543221 111112334556777665543
No 177
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=43.72 E-value=2.7e+02 Score=25.73 Aligned_cols=56 Identities=23% Similarity=0.113 Sum_probs=37.5
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
++++++.++|.-|.+++......|.+++++..... +.....+.++..+.++..+..
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~ 62 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGD--DAAATAELVEAAGGKARARQV 62 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEEC
Confidence 45778888899999999998888988777654321 112233345666777666543
No 178
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=43.60 E-value=1.3e+02 Score=27.83 Aligned_cols=48 Identities=29% Similarity=0.405 Sum_probs=32.5
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
|.|.-.|||-.|.++|-++...|-+++++....... . -.|.+++.+..
T Consensus 21 R~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~--~-------p~~~~~i~v~s 68 (185)
T PF04127_consen 21 RFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLP--P-------PPGVKVIRVES 68 (185)
T ss_dssp EEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS-------------TTEEEEE-SS
T ss_pred eEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcccc--c-------cccceEEEecc
Confidence 456777999999999999999999999999874321 1 24778888754
No 179
>PRK08628 short chain dehydrogenase; Provisional
Probab=43.45 E-value=2.6e+02 Score=26.24 Aligned_cols=70 Identities=16% Similarity=0.109 Sum_probs=43.1
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (439)
+.++|+.++|--|.++|......|.+++++...... . .-.+.++..|.++..+...-. -.+....+++..
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~--~-~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~ 77 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPD--D-EFAEELRALQPRAEFVQVDLT-DDAQCRDAVEQT 77 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhh--H-HHHHHHHhcCCceEEEEccCC-CHHHHHHHHHHH
Confidence 356778888889999999988899998776543221 1 122345667877766654222 233344444443
No 180
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=43.37 E-value=84 Score=31.73 Aligned_cols=48 Identities=19% Similarity=0.153 Sum_probs=31.9
Q ss_pred eEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEE
Q 013596 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
.|+..++|.-|.+++..++.+|...++++... ..+.+.++.+|++.+.
T Consensus 190 ~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~-----~~~~~~~~~~Ga~~~i 237 (369)
T cd08301 190 TVAIFGLGAVGLAVAEGARIRGASRIIGVDLN-----PSKFEQAKKFGVTEFV 237 (369)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC-----HHHHHHHHHcCCceEE
Confidence 34344679999999999999998434444221 2355668889986544
No 181
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=43.34 E-value=2e+02 Score=28.17 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=34.1
Q ss_pred eeEEe-cCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEE
Q 013596 178 RIIAE-TGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAV 232 (439)
Q Consensus 178 ~~Vv~-aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v 232 (439)
.+++. .++|..|.++...|+.+|.+++++.+. ..|.+.++.+|++.+..
T Consensus 145 ~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~------~~~~~~~~~~g~~~~i~ 194 (324)
T cd08291 145 KAVVHTAAASALGRMLVRLCKADGIKVINIVRR------KEQVDLLKKIGAEYVLN 194 (324)
T ss_pred cEEEEccCccHHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHHcCCcEEEE
Confidence 34443 578889999988999999985554332 23556678899976554
No 182
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=42.98 E-value=2.6e+02 Score=26.28 Aligned_cols=71 Identities=10% Similarity=0.115 Sum_probs=42.2
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (439)
+.++|+.++|.-|.++|......|.+++++... . ++.......++..|.++..+...- +-.+.++.+++..
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~-~-~~~~~~~~~i~~~~~~~~~~~~Dl-~d~~~i~~~~~~~ 83 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARK-A-EELEEAAAHLEALGIDALWIAADV-ADEADIERLAEET 83 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC-H-HHHHHHHHHHHhcCCeEEEEEccC-CCHHHHHHHHHHH
Confidence 457788888899999999888899987655432 1 111222333556677776665322 2233444444443
No 183
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=42.88 E-value=2.6e+02 Score=26.17 Aligned_cols=31 Identities=10% Similarity=0.079 Sum_probs=25.6
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEec
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP 208 (439)
+++++.++|..|.++|......|.+++++-.
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r 32 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKVIATGR 32 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEEC
Confidence 3677888899999999999999998766643
No 184
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=42.42 E-value=65 Score=33.93 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=38.2
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEecCC--chhhHHHHHHHHHHcCCEEEEE
Q 013596 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQ--DMERQALNVFRMRLLGAEVRAV 232 (439)
Q Consensus 180 Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~--~~~~~~~k~~~m~~~GA~Vv~v 232 (439)
|+.-++||.|.-+|..+.++|.+++++.... .+......++.++..|.+++.-
T Consensus 275 VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~ 329 (449)
T TIGR01316 275 VVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHFL 329 (449)
T ss_pred EEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEec
Confidence 4456899999999999999999999988652 1111223345677888888753
No 185
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=42.27 E-value=2.8e+02 Score=25.95 Aligned_cols=72 Identities=18% Similarity=0.050 Sum_probs=42.4
Q ss_pred CCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 013596 176 KTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (439)
Q Consensus 176 ~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (439)
.+.++|+.++|.-|.++|......|.+++++..... ..+.-...++..|.++..+..+- +-.+.+..+.+..
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~--~~~~~~~~l~~~~~~~~~~~~D~-~~~~~i~~~~~~~ 82 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDINAD--AANHVVDEIQQLGGQAFACRCDI-TSEQELSALADFA 82 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHH--HHHHHHHHHHhcCCcEEEEEccC-CCHHHHHHHHHHH
Confidence 356778888888999999998889998777654321 11112233455677765554321 2233444444443
No 186
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=42.14 E-value=1.4e+02 Score=30.22 Aligned_cols=48 Identities=17% Similarity=0.126 Sum_probs=32.8
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
.++|. ++|.-|.+++..|+.+|.+.++.+... +.|.+.++.+|++.+.
T Consensus 189 ~VlV~-G~G~vG~~a~~~ak~~G~~~vi~~~~~-----~~~~~~~~~lGa~~~i 236 (368)
T cd08300 189 TVAVF-GLGAVGLAVIQGAKAAGASRIIGIDIN-----PDKFELAKKFGATDCV 236 (368)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHcCCCEEE
Confidence 34444 679999999999999999544444322 2355667889997544
No 187
>PRK06172 short chain dehydrogenase; Provisional
Probab=41.89 E-value=2.9e+02 Score=25.72 Aligned_cols=56 Identities=27% Similarity=0.190 Sum_probs=37.7
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
+.++++..+|.-|.++|......|.+++++.-..+ ..+...+.++..|.++..+..
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 63 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAA--GGEETVALIREAGGEALFVAC 63 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHHhcCCceEEEEc
Confidence 45778888889999999998889998777654322 112223445667877766543
No 188
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.79 E-value=3.5e+02 Score=26.53 Aligned_cols=71 Identities=21% Similarity=0.171 Sum_probs=43.6
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~ 249 (439)
+.++|+.++|.-|.++|......|.+++++-.... .......+.++..|.+++.+..+-.+ .+....+++.
T Consensus 13 k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~-~~~~~~~~~i~~~g~~~~~~~~Dv~d-~~~~~~~~~~ 83 (306)
T PRK07792 13 KVAVVTGAAAGLGRAEALGLARLGATVVVNDVASA-LDASDVLDEIRAAGAKAVAVAGDISQ-RATADELVAT 83 (306)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCch-hHHHHHHHHHHhcCCeEEEEeCCCCC-HHHHHHHHHH
Confidence 45678888888999999998889998766533211 11222345567788888776543222 3344444443
No 189
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=41.77 E-value=3e+02 Score=25.75 Aligned_cols=55 Identities=27% Similarity=0.295 Sum_probs=35.7
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEc
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~ 233 (439)
+.++|+.++|.-|.++|....+.|.+++++--.. +....-...++..|.++..+.
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~--~~~~~~~~~l~~~~~~~~~~~ 64 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGAEIIINDITA--ERAELAVAKLRQEGIKAHAAP 64 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCH--HHHHHHHHHHHhcCCeEEEEe
Confidence 4577888888999999999988998777654321 111222334555576666554
No 190
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=41.54 E-value=80 Score=31.67 Aligned_cols=49 Identities=22% Similarity=0.206 Sum_probs=34.6
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv 230 (439)
.++|. ++|.-|...+..++.+|.+++++-.... .+.|.+.++.+|++.+
T Consensus 175 ~vlI~-G~G~vG~~a~q~ak~~G~~vi~~~~~~~---~~~~~~~~~~~Ga~~v 223 (355)
T cd08230 175 RALVL-GAGPIGLLAALLLRLRGFEVYVLNRRDP---PDPKADIVEELGATYV 223 (355)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCC---CHHHHHHHHHcCCEEe
Confidence 34444 6799999999999999997666554321 1346667889999864
No 191
>PRK08265 short chain dehydrogenase; Provisional
Probab=41.29 E-value=3e+02 Score=26.08 Aligned_cols=32 Identities=22% Similarity=0.127 Sum_probs=25.8
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEec
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP 208 (439)
+.++|+.++|--|.++|......|.+++++-.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r 38 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDI 38 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 45778888888999999999899998776643
No 192
>PRK06949 short chain dehydrogenase; Provisional
Probab=41.26 E-value=3e+02 Score=25.64 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=27.2
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~ 209 (439)
+.++++.++|.-|.++|......|.+++++...
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~ 42 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASRR 42 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 457788888999999999999999987766544
No 193
>PRK07677 short chain dehydrogenase; Provisional
Probab=41.15 E-value=2.7e+02 Score=26.01 Aligned_cols=82 Identities=12% Similarity=0.148 Sum_probs=44.5
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCc
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETT 257 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~ 257 (439)
.++|+.++|.-|.++|......|.+++++--.. .+.+.-...++..+.+++.+...- +-.+.++.+++...++...-
T Consensus 3 ~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 3 VVIITGGSSGMGKAMAKRFAEEGANVVITGRTK--EKLEEAKLEIEQFPGQVLTVQMDV-RNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEecC-CCHHHHHHHHHHHHHHhCCc
Confidence 467788888899999999889999766654331 111222233445566666554321 22344444444433322233
Q ss_pred eEEec
Q 013596 258 HYILG 262 (439)
Q Consensus 258 ~y~~~ 262 (439)
..+++
T Consensus 80 d~lI~ 84 (252)
T PRK07677 80 DALIN 84 (252)
T ss_pred cEEEE
Confidence 34443
No 194
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=40.76 E-value=97 Score=30.84 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=34.6
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
.+++ .++|..|.+++..|+.+|.+.++.+... ..|.+.++.+|++.+.
T Consensus 177 ~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~~-----~~~~~~~~~~g~~~v~ 224 (350)
T cd08256 177 VVVL-AGAGPLGLGMIGAARLKNPKKLIVLDLK-----DERLALARKFGADVVL 224 (350)
T ss_pred EEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcCC-----HHHHHHHHHcCCcEEe
Confidence 3445 6679999999999999998876666542 2355567888886543
No 195
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=40.72 E-value=96 Score=30.68 Aligned_cols=46 Identities=20% Similarity=0.240 Sum_probs=31.5
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv 230 (439)
.+++ .++|.-|.+++..|+.+|.+++++.+. ..+++.++.+|++-+
T Consensus 166 ~vlV-~g~g~iG~~~~~~a~~~G~~vi~~~~~------~~~~~~~~~~g~~~~ 211 (333)
T cd08296 166 LVAV-QGIGGLGHLAVQYAAKMGFRTVAISRG------SDKADLARKLGAHHY 211 (333)
T ss_pred EEEE-ECCcHHHHHHHHHHHHCCCeEEEEeCC------hHHHHHHHHcCCcEE
Confidence 3444 458999999999999999985555432 224555677887543
No 196
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=40.49 E-value=3e+02 Score=25.34 Aligned_cols=57 Identities=19% Similarity=0.227 Sum_probs=36.1
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
+.++++.++|.-|..+|......|.++++++.... +........++..+.++..+..
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~ 62 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINE-EAAQELLEEIKEEGGDAIAVKA 62 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCH-HHHHHHHHHHHhcCCeEEEEEC
Confidence 45778888899999999998888998777633321 1111122234445666766543
No 197
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=40.43 E-value=1.8e+02 Score=28.18 Aligned_cols=53 Identities=25% Similarity=0.283 Sum_probs=31.9
Q ss_pred CeeEEecCcch-HHHHH--HHHHHHcCCeEEEEecCCchhhH-HHHHHHHHHcCCEE
Q 013596 177 TRIIAETGAGQ-HGVAT--ATVCARFGLQCIVYMGAQDMERQ-ALNVFRMRLLGAEV 229 (439)
Q Consensus 177 ~~~Vv~aSsGN-hG~Al--A~aa~~~Gi~~~IvmP~~~~~~~-~~k~~~m~~~GA~V 229 (439)
+++++-++.|| -|=++ |..-+..|+++.|++++...... ..+.++++.+|..+
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~ 117 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGYEVTVCYPKQSSKPHYENLVTQCEDLGIPF 117 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCCeEEEEEcCCCChHHHHHHHHHHHHcCCCE
Confidence 35666778885 44444 44455579999999975321111 33455677778665
No 198
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=40.15 E-value=1.3e+02 Score=26.98 Aligned_cols=48 Identities=8% Similarity=0.133 Sum_probs=34.8
Q ss_pred chHHHHHHHHHHHcCCeEEEEecCCc--hhhHHH---HHHHHHHcCCEEEEEc
Q 013596 186 GQHGVATATVCARFGLQCIVYMGAQD--MERQAL---NVFRMRLLGAEVRAVH 233 (439)
Q Consensus 186 GNhG~AlA~aa~~~Gi~~~IvmP~~~--~~~~~~---k~~~m~~~GA~Vv~v~ 233 (439)
+|.+.+++.+++++|..++++-|++- +..+.. -.+..+..|.+|..++
T Consensus 13 ~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 65 (158)
T PF00185_consen 13 NRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD 65 (158)
T ss_dssp SHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES
T ss_pred ChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 79999999999999999999999862 111111 1133456699998874
No 199
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.89 E-value=3.1e+02 Score=25.34 Aligned_cols=70 Identities=24% Similarity=0.206 Sum_probs=42.5
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~ 249 (439)
+.++++.++|--|.++|......|.+++++.... .+.....+.++..|+++..+...- .-.+..+++++.
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~~ 75 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ--EKLEEAVAECGALGTEVRGYAANV-TDEEDVEATFAQ 75 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCceEEEEcCC-CCHHHHHHHHHH
Confidence 4567777789999999999888999876655432 112223344666788876654321 123344444444
No 200
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=39.88 E-value=3.1e+02 Score=25.40 Aligned_cols=72 Identities=18% Similarity=0.190 Sum_probs=43.8
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (439)
+.++++.++|--|.++|......|.+++++..... +..+.-.+.++..|.++..+...- +..+....+++..
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~D~-~~~~~~~~~~~~~ 78 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSK-EAAENLVNELGKEGHDVYAVQADV-SKVEDANRLVEEA 78 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcH-HHHHHHHHHHHhcCCeEEEEECCC-CCHHHHHHHHHHH
Confidence 45778888889999999988889998776543321 112222344666788887665422 2233444444443
No 201
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=38.82 E-value=2.9e+02 Score=24.84 Aligned_cols=58 Identities=17% Similarity=0.283 Sum_probs=33.3
Q ss_pred CCeeEEecCcch-HHHHHHHH--HHHcCCeEEEEe--cC-CchhhHHHHHHHHHHcCCEEEEEc
Q 013596 176 KTRIIAETGAGQ-HGVATATV--CARFGLQCIVYM--GA-QDMERQALNVFRMRLLGAEVRAVH 233 (439)
Q Consensus 176 ~~~~Vv~aSsGN-hG~AlA~a--a~~~Gi~~~Ivm--P~-~~~~~~~~k~~~m~~~GA~Vv~v~ 233 (439)
.+++++-++.|| -|-+++.+ -+..|++++|++ |. ...+....+.+.++.+|.+++...
T Consensus 25 ~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 88 (169)
T PF03853_consen 25 GPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELD 88 (169)
T ss_dssp T-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSC
T ss_pred CCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeecc
Confidence 445666677885 44555544 444799999854 32 111224456777888887776543
No 202
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=38.68 E-value=3.4e+02 Score=25.54 Aligned_cols=31 Identities=16% Similarity=0.078 Sum_probs=25.3
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEe
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYM 207 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~Ivm 207 (439)
+.++|+.++|--|.++|......|.+++++-
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~ 37 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLE 37 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 4577888888899999999999999876654
No 203
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=38.61 E-value=1.1e+02 Score=30.95 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=31.7
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
.++| .++|.-|.+++..|+.+|.+.+|.+-. .+.+.+.++.+|++.+.
T Consensus 188 ~VlV-~G~G~iG~~a~q~Ak~~G~~~Vi~~~~-----~~~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 188 TVAV-FGLGGIGLSVIQGARMAKASRIIAIDI-----NPAKFELAKKLGATDCV 235 (368)
T ss_pred EEEE-ECCCHHHHHHHHHHHHcCCCeEEEEcC-----CHHHHHHHHHhCCCeEE
Confidence 3444 467999999988999999943444322 12355667889986543
No 204
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=38.53 E-value=1e+02 Score=30.58 Aligned_cols=46 Identities=20% Similarity=0.329 Sum_probs=30.7
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~V 229 (439)
.+++- ++|..|.+++..++.+|.+.++++... ..|...++.+|++.
T Consensus 178 ~vlI~-g~g~vg~~~~~~a~~~G~~~v~~~~~~-----~~~~~~~~~~g~~~ 223 (350)
T cd08240 178 PVVII-GAGGLGLMALALLKALGPANIIVVDID-----EAKLEAAKAAGADV 223 (350)
T ss_pred EEEEE-CCcHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHhCCcE
Confidence 34444 678999999999999999655554322 23445567788753
No 205
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=38.05 E-value=1.1e+02 Score=30.98 Aligned_cols=48 Identities=21% Similarity=0.283 Sum_probs=29.8
Q ss_pred eEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEE
Q 013596 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
.|+..++|.-|.++...|+.+|.+++++..... .+.+..+.+|++.+.
T Consensus 186 ~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~-----~~~~~~~~~Ga~~vi 233 (360)
T PLN02586 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSN-----KEDEAINRLGADSFL 233 (360)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc-----hhhhHHHhCCCcEEE
Confidence 333366788888888888899987555433321 122345678885443
No 206
>PRK06701 short chain dehydrogenase; Provisional
Probab=38.03 E-value=3.9e+02 Score=25.97 Aligned_cols=71 Identities=13% Similarity=0.125 Sum_probs=43.4
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~ 249 (439)
+.++|+..+|.-|.++|....+.|.+++++....... .......++..|.++..+..+- +-.+.++.+++.
T Consensus 47 k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~-~~~~~~~~~~~~~~~~~~~~Dl-~~~~~~~~~~~~ 117 (290)
T PRK06701 47 KVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHED-ANETKQRVEKEGVKCLLIPGDV-SDEAFCKDAVEE 117 (290)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchH-HHHHHHHHHhcCCeEEEEEccC-CCHHHHHHHHHH
Confidence 3577788888999999999988999987765442211 1223344566787776654321 223444444444
No 207
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=37.63 E-value=4.5e+02 Score=26.61 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=37.4
Q ss_pred eEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHH-cCCEEEEEc
Q 013596 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRL-LGAEVRAVH 233 (439)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~-~GA~Vv~v~ 233 (439)
.|+..++|.-|...+.+++.+|...+|++... +.+++..+. .|++++...
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~-----~~Rl~~A~~~~g~~~~~~~ 221 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRS-----PERLELAKEAGGADVVVNP 221 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCC-----HHHHHHHHHhCCCeEeecC
Confidence 56678899999999999999999999988442 335555666 677766543
No 208
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=37.60 E-value=3.5e+02 Score=25.28 Aligned_cols=55 Identities=18% Similarity=0.143 Sum_probs=36.4
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEc
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~ 233 (439)
+.++++.++|.-|.++|......|.+++++..... ....-...++..|.++..+.
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~ 66 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAA--TLEAAVAALRAAGGAAEALA 66 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHH--HHHHHHHHHHhcCCceEEEE
Confidence 45778888889999999998889998777655421 11222333556676665554
No 209
>PRK08278 short chain dehydrogenase; Provisional
Probab=37.59 E-value=3.7e+02 Score=25.66 Aligned_cols=57 Identities=12% Similarity=0.110 Sum_probs=37.8
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhh-----HHHHHHHHHHcCCEEEEEc
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMER-----QALNVFRMRLLGAEVRAVH 233 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~-----~~~k~~~m~~~GA~Vv~v~ 233 (439)
+.++++.++|--|.++|......|.+++++........ ...-.+.++..|.+++.+.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 68 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLV 68 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEE
Confidence 35677888888999999999999999888775432100 0111234566788776664
No 210
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=37.57 E-value=1.1e+02 Score=30.43 Aligned_cols=48 Identities=21% Similarity=0.313 Sum_probs=33.5
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
.+++ .++|--|.+....++.+|.+.++++-. .+.|++..+.+||+.+.
T Consensus 172 ~VlV-~G~G~vG~~aiqlak~~G~~~Vi~~~~-----~~~~~~~a~~lGa~~vi 219 (343)
T PRK09880 172 RVFV-SGVGPIGCLIVAAVKTLGAAEIVCADV-----SPRSLSLAREMGADKLV 219 (343)
T ss_pred EEEE-ECCCHHHHHHHHHHHHcCCcEEEEEeC-----CHHHHHHHHHcCCcEEe
Confidence 4445 467999999988899999865554432 23456678889997654
No 211
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=37.51 E-value=3.2e+02 Score=24.92 Aligned_cols=68 Identities=15% Similarity=0.188 Sum_probs=41.1
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHH
Q 013596 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (439)
Q Consensus 180 Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~ 249 (439)
+++.++|-.|..+|......|.+++++..... .........++..|+++..+...- +..+..+++++.
T Consensus 2 lItG~~g~iG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~~ 69 (239)
T TIGR01830 2 LVTGASRGIGRAIALKLAKEGAKVIITYRSSE-EGAEEVVEELKAYGVKALGVVCDV-SDREDVKAVVEE 69 (239)
T ss_pred EEECCCcHHHHHHHHHHHHCCCEEEEEeCCch-hHHHHHHHHHHhcCCceEEEEecC-CCHHHHHHHHHH
Confidence 56778889999999998888998766654321 112223344677788776654321 223344444443
No 212
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=37.36 E-value=1.9e+02 Score=29.84 Aligned_cols=47 Identities=21% Similarity=0.344 Sum_probs=34.5
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv 230 (439)
.+++ .++|--|..++..|+.+|.+.+++.-. .+.+.+..+.+|++.+
T Consensus 188 ~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~d~-----~~~r~~~a~~~Ga~~v 234 (393)
T TIGR02819 188 TVYI-AGAGPVGLAAAASAQLLGAAVVIVGDL-----NPARLAQARSFGCETV 234 (393)
T ss_pred EEEE-ECCCHHHHHHHHHHHHcCCceEEEeCC-----CHHHHHHHHHcCCeEE
Confidence 4445 678999999999999999987664422 1346667889999853
No 213
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=37.34 E-value=1.1e+02 Score=30.39 Aligned_cols=47 Identities=23% Similarity=0.103 Sum_probs=32.5
Q ss_pred eEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEE
Q 013596 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
.|+..++|--|.+++..|+.+|.+++++... +.|.+.++.+||+.+.
T Consensus 168 ~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~------~~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 168 RLGLYGFGGSAHLTAQVALAQGATVHVMTRG------AAARRLALALGAASAG 214 (329)
T ss_pred EEEEEcCCHHHHHHHHHHHHCCCeEEEEeCC------hHHHHHHHHhCCceec
Confidence 3444456888888888899999975444332 2356778999997654
No 214
>PRK08017 oxidoreductase; Provisional
Probab=37.22 E-value=3.1e+02 Score=25.56 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=36.2
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
.++|+.++|.-|.++|......|.+++++.... .+.+.++..|.+.+.++.
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~------~~~~~~~~~~~~~~~~D~ 54 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRKP------DDVARMNSLGFTGILLDL 54 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH------HHhHHHHhCCCeEEEeec
Confidence 467777789999999999888899876654331 233345567887777654
No 215
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=37.04 E-value=4.5e+02 Score=26.44 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=18.4
Q ss_pred CCEEEEcCCchHHH--HHHHHHHhcCCCcEEEEEecC
Q 013596 297 PDVLIACVGGGSNA--MGLFHEFVNDKDVRLIGVEAA 331 (439)
Q Consensus 297 ~d~vvvpvG~GG~~--aGi~~~~~~~p~vrvigVep~ 331 (439)
.| +|+++|||..+ ++.++.++ .+.+|.|-+.
T Consensus 81 ~d-~IIaiGGGsv~D~aK~iA~~~---gip~I~VPTT 113 (332)
T cd08549 81 TE-FLLGIGSGTIIDLVKFVSFKV---GKPFISVPTA 113 (332)
T ss_pred CC-EEEEECCcHHHHHHHHHHHHc---CCCEEEeCCC
Confidence 44 46778888877 55544333 3456666554
No 216
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=37.00 E-value=2e+02 Score=28.27 Aligned_cols=48 Identities=19% Similarity=0.224 Sum_probs=32.3
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEE
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv 230 (439)
+.+++. ++|.-|.+++..++.+|+..++++.. . ..|.+.++.+|+.++
T Consensus 169 ~~vlI~-g~g~vg~~~~~~a~~~g~~~v~~~~~-~----~~~~~~~~~~g~~~~ 216 (344)
T cd08284 169 DTVAVI-GCGPVGLCAVLSAQVLGAARVFAVDP-V----PERLERAAALGAEPI 216 (344)
T ss_pred CEEEEE-CCcHHHHHHHHHHHHcCCceEEEEcC-C----HHHHHHHHHhCCeEE
Confidence 345554 68999999999999999843444433 2 234555777998653
No 217
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=36.93 E-value=3e+02 Score=25.94 Aligned_cols=31 Identities=10% Similarity=0.177 Sum_probs=25.3
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEec
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP 208 (439)
+++++.++|.-|.++|......|.+++++-.
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r 32 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSR 32 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeC
Confidence 3677888889999999999999998766543
No 218
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=36.67 E-value=1.4e+02 Score=29.02 Aligned_cols=47 Identities=23% Similarity=0.262 Sum_probs=31.6
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
++++. ++|--|.+++..|+.+|.+.+++... ..+.+.++.+|++.+.
T Consensus 158 ~vlV~-g~g~vg~~~~q~a~~~G~~vi~~~~~------~~~~~~~~~~g~~~~~ 204 (319)
T cd08242 158 KVAVL-GDGKLGLLIAQVLALTGPDVVLVGRH------SEKLALARRLGVETVL 204 (319)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCeEEEEcCC------HHHHHHHHHcCCcEEe
Confidence 44454 57899999999999999995443322 2345567778886543
No 219
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=36.65 E-value=3.9e+02 Score=26.35 Aligned_cols=58 Identities=21% Similarity=0.165 Sum_probs=39.6
Q ss_pred CCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 176 KTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 176 ~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
.+.++||..|+.-|.++|...++.|.+++++-...+.- .....+.-+.+|.+|..++-
T Consensus 6 ~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL-~~la~~l~~~~~v~v~vi~~ 63 (265)
T COG0300 6 GKTALITGASSGIGAELAKQLARRGYNLILVARREDKL-EALAKELEDKTGVEVEVIPA 63 (265)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHH-HHHHHHHHHhhCceEEEEEC
Confidence 34677888888899999999999999999998764321 12233333445666655543
No 220
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=36.55 E-value=4.6e+02 Score=26.67 Aligned_cols=75 Identities=16% Similarity=0.138 Sum_probs=41.2
Q ss_pred CCCchhhhHHHHHHHHHHH---hCCCee-EEecCcchHHHHHHHHHH---HcCCeEEEEecCCchhhHHHHHHHHHHcCC
Q 013596 155 HTGAHKINNAVGQALLAKR---LGKTRI-IAETGAGQHGVATATVCA---RFGLQCIVYMGAQDMERQALNVFRMRLLGA 227 (439)
Q Consensus 155 pTGSfK~Rga~~~~~~a~~---~g~~~~-Vv~aSsGNhG~AlA~aa~---~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA 227 (439)
+.|....|-+......... ...+.+ |+.++++++|..++..+- .-|= .|++|.-.- ..-....+.+|+
T Consensus 68 ~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd--~Vlv~~P~y---~~~~~~~~~~g~ 142 (396)
T PRK09257 68 IEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDA--KVWVSDPTW---PNHRAIFEAAGL 142 (396)
T ss_pred CCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCC--eEEECCCCc---ccHHHHHHHcCC
Confidence 4677777776554432111 123344 344566788888876322 2453 455554211 112334788999
Q ss_pred EEEEEcC
Q 013596 228 EVRAVHS 234 (439)
Q Consensus 228 ~Vv~v~~ 234 (439)
+++.++.
T Consensus 143 ~~v~v~~ 149 (396)
T PRK09257 143 EVKTYPY 149 (396)
T ss_pred cEEEEec
Confidence 9998863
No 221
>PRK05650 short chain dehydrogenase; Provisional
Probab=36.54 E-value=3.8e+02 Score=25.40 Aligned_cols=55 Identities=18% Similarity=0.091 Sum_probs=37.2
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
+++++.++|.-|.++|......|.+++++..... +.+.-...++..|.++..+..
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~ 56 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEE--GGEETLKLLREAGGDGFYQRC 56 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCceEEEEc
Confidence 4678888899999999998889998777654321 122223345666777766543
No 222
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=36.12 E-value=4.5e+02 Score=26.16 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=21.6
Q ss_pred CCCEEEEcCCchHHH--HHHHHHHhcCCCcEEEEEecCC
Q 013596 296 KPDVLIACVGGGSNA--MGLFHEFVNDKDVRLIGVEAAG 332 (439)
Q Consensus 296 ~~d~vvvpvG~GG~~--aGi~~~~~~~p~vrvigVep~~ 332 (439)
.+|. |+.+|||+.+ ++.++. ...+.+.+|.|-+.-
T Consensus 78 ~~d~-IIaiGGGs~~D~aK~ia~-~~~~~~p~i~iPTt~ 114 (332)
T cd07766 78 EVDA-VIAVGGGSTLDTAKAVAA-LLNRGLPIIIVPTTA 114 (332)
T ss_pred CcCE-EEEeCCchHHHHHHHHHH-HhcCCCCEEEEeCCC
Confidence 4666 5678888887 434333 323456788887654
No 223
>PRK12828 short chain dehydrogenase; Provisional
Probab=36.11 E-value=3.4e+02 Score=24.73 Aligned_cols=56 Identities=14% Similarity=0.052 Sum_probs=38.2
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
+.++|+.++|--|.++|......|.+++++...... .......+...+.+++.++.
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~D~ 63 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAP--LSQTLPGVPADALRIGGIDL 63 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHh--HHHHHHHHhhcCceEEEeec
Confidence 457788888999999999988889997776653221 11223345566777777654
No 224
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=36.06 E-value=2.7e+02 Score=26.91 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=31.6
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
.+++ .++|..|.+++..|+..|.++++..+. +.+.+.++.+|++.+.
T Consensus 163 ~vli-~g~g~~g~~~~~~a~~~G~~v~~~~~~------~~~~~~~~~~g~~~~~ 209 (336)
T cd08276 163 TVLV-QGTGGVSLFALQFAKAAGARVIATSSS------DEKLERAKALGADHVI 209 (336)
T ss_pred EEEE-ECCcHHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHHcCCCEEE
Confidence 3444 467889999999999999996555433 2244446667876544
No 225
>PRK06123 short chain dehydrogenase; Provisional
Probab=35.82 E-value=3.6e+02 Score=24.94 Aligned_cols=70 Identities=19% Similarity=0.135 Sum_probs=40.3
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHH
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~ 249 (439)
.++|+.++|.-|.++|....+.|..+++.... ..+........++..|.+++.+...- +..+....+++.
T Consensus 4 ~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~Dl-~~~~~~~~~~~~ 73 (248)
T PRK06123 4 VMIITGASRGIGAATALLAAERGYAVCLNYLR-NRDAAEAVVQAIRRQGGEALAVAADV-ADEADVLRLFEA 73 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEecCC-CHHHHHHHHHHHHhCCCcEEEEEecc-CCHHHHHHHHHH
Confidence 46778888889999998888889876554322 22222233344666777765554321 223344444444
No 226
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=35.82 E-value=1.3e+02 Score=30.11 Aligned_cols=45 Identities=24% Similarity=0.381 Sum_probs=30.6
Q ss_pred eeEEecCcchHHHHHHHHHHHcCC-eEEEEecCCchhhHHHHHHHHHHcCCEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGL-QCIVYMGAQDMERQALNVFRMRLLGAEV 229 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi-~~~IvmP~~~~~~~~~k~~~m~~~GA~V 229 (439)
.+++. ++|..|.+++..|+.+|+ +++++... ..+...++.+|++-
T Consensus 180 ~vlI~-g~g~vG~~~~~lak~~G~~~v~~~~~~------~~~~~~~~~~g~~~ 225 (361)
T cd08231 180 TVVVQ-GAGPLGLYAVAAAKLAGARRVIVIDGS------PERLELAREFGADA 225 (361)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcCC------HHHHHHHHHcCCCe
Confidence 45555 579999999999999999 55444322 22445567788754
No 227
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=35.45 E-value=3.3e+02 Score=26.73 Aligned_cols=50 Identities=14% Similarity=0.233 Sum_probs=33.6
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCC-eEEEEecCCchhhHHHHHHHHHH-cCCEEEEE
Q 013596 177 TRIIAETGAGQHGVATATVCARFGL-QCIVYMGAQDMERQALNVFRMRL-LGAEVRAV 232 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi-~~~IvmP~~~~~~~~~k~~~m~~-~GA~Vv~v 232 (439)
+.+++...+|--|.++.-.|+.+|. +++++... ..|.+.++. +|++-+..
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s------~~~~~~~~~~lGa~~vi~ 207 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGS------DEKCQLLKSELGFDAAIN 207 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCC------HHHHHHHHHhcCCcEEEE
Confidence 3555655568899998888999998 56555433 234555655 99976543
No 228
>PLN02740 Alcohol dehydrogenase-like
Probab=35.42 E-value=1.1e+02 Score=31.03 Aligned_cols=48 Identities=19% Similarity=0.122 Sum_probs=31.3
Q ss_pred eEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEE
Q 013596 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
.|+..++|.-|.+++..|+.+|.+-++.+-. ...+.+..+.+|++.+.
T Consensus 201 ~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~-----~~~r~~~a~~~Ga~~~i 248 (381)
T PLN02740 201 SVAIFGLGAVGLAVAEGARARGASKIIGVDI-----NPEKFEKGKEMGITDFI 248 (381)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCcEEEEcC-----ChHHHHHHHHcCCcEEE
Confidence 3444467999999988999999853343322 12355667888986543
No 229
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=35.27 E-value=3.7e+02 Score=24.89 Aligned_cols=55 Identities=16% Similarity=0.056 Sum_probs=36.4
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
.++|+.++|--|.+++......|.+++++..... ..+.-...++..+.++..+..
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 57 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEA--GAEAAAKVATDAGGSVIYLVA 57 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCceEEEEC
Confidence 4678888899999999998889998777765422 111122234456777766543
No 230
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=35.20 E-value=3.4e+02 Score=24.50 Aligned_cols=102 Identities=13% Similarity=0.110 Sum_probs=54.2
Q ss_pred HHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCC
Q 013596 189 GVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPH 268 (439)
Q Consensus 189 G~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~ 268 (439)
|..+.++++.+|.++.--++..+. -..-.+.+...|-.|..+... .+..+++.+.+.+...+ .=+.+.. +
T Consensus 13 G~~i~~~~~~~g~~~~~rv~g~dl--~~~l~~~~~~~~~~ifllG~~----~~~~~~~~~~l~~~yP~-l~ivg~~---~ 82 (172)
T PF03808_consen 13 GMPIVWAARLLGRPLPERVTGSDL--FPDLLRRAEQRGKRIFLLGGS----EEVLEKAAANLRRRYPG-LRIVGYH---H 82 (172)
T ss_pred CHHHHHHHHHcCCCCCcccCHHHH--HHHHHHHHHHcCCeEEEEeCC----HHHHHHHHHHHHHHCCC-eEEEEec---C
Confidence 478889999999887433333221 122334566778899999753 23334444433333222 2222222 3
Q ss_pred CcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHH
Q 013596 269 PYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSN 309 (439)
Q Consensus 269 p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~ 309 (439)
+|.. .... .++..+|. +. .||.|+++.|.---
T Consensus 83 g~f~---~~~~---~~i~~~I~-~~--~pdiv~vglG~PkQ 114 (172)
T PF03808_consen 83 GYFD---EEEE---EAIINRIN-AS--GPDIVFVGLGAPKQ 114 (172)
T ss_pred CCCC---hhhH---HHHHHHHH-Hc--CCCEEEEECCCCHH
Confidence 3210 1122 44455553 33 58999999987754
No 231
>PRK07814 short chain dehydrogenase; Provisional
Probab=35.14 E-value=3.9e+02 Score=25.20 Aligned_cols=71 Identities=14% Similarity=0.115 Sum_probs=41.4
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (439)
+.++++.++|--|.++|......|.+++++..... ....-.+.++..|..+..+... -+-.+....+++..
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~--~~~~~~~~l~~~~~~~~~~~~D-~~~~~~~~~~~~~~ 81 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTES--QLDEVAEQIRAAGRRAHVVAAD-LAHPEATAGLAGQA 81 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCcEEEEEcc-CCCHHHHHHHHHHH
Confidence 45778888888999999988889998877764321 1122223344556666544322 12234444444443
No 232
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=34.99 E-value=3.6e+02 Score=24.75 Aligned_cols=33 Identities=15% Similarity=0.016 Sum_probs=26.5
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~ 209 (439)
+.++++.++|.-|.++|....+.|.++++....
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~ 35 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGYRVIATYFS 35 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 356788888899999999888889887777654
No 233
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=34.82 E-value=1.2e+02 Score=30.42 Aligned_cols=48 Identities=21% Similarity=0.182 Sum_probs=32.2
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
.++|. ++|--|.+++..|+.+|.+.++.+-.. ..|.+.++.+|++.+.
T Consensus 179 ~VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~~~~-----~~~~~~~~~~Ga~~~i 226 (358)
T TIGR03451 179 SVAVI-GCGGVGDAAIAGAALAGASKIIAVDID-----DRKLEWAREFGATHTV 226 (358)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcCC-----HHHHHHHHHcCCceEE
Confidence 34444 678899999889999998745544322 2355667888986433
No 234
>PRK09135 pteridine reductase; Provisional
Probab=34.78 E-value=3.7e+02 Score=24.74 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=27.9
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~ 209 (439)
+.++|+.++|.-|..++......|.+++++...
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~ 39 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAAGYRVAIHYHR 39 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 357788888999999999988899998888754
No 235
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=34.47 E-value=3.7e+02 Score=24.71 Aligned_cols=54 Identities=17% Similarity=0.114 Sum_probs=35.8
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 180 Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
+++.++|.-|.++|....+.|.+++++..... +......+.++..|.++..+..
T Consensus 2 lItGas~giG~~~a~~l~~~G~~v~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 55 (239)
T TIGR01831 2 LVTGASRGIGRAIANRLAADGFEICVHYHSGR-SDAESVVSAIQAQGGNARLLQF 55 (239)
T ss_pred EEeCCCchHHHHHHHHHHHCCCEEEEEeCCCH-HHHHHHHHHHHHcCCeEEEEEc
Confidence 56777888999999999999999776654322 1122223445666877766653
No 236
>PRK07062 short chain dehydrogenase; Provisional
Probab=34.46 E-value=4e+02 Score=25.06 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=26.8
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~ 209 (439)
+.++|+.+++--|.++|......|.+++++...
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRD 41 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 457788888889999999999999998776654
No 237
>PRK09242 tropinone reductase; Provisional
Probab=34.31 E-value=3.9e+02 Score=24.96 Aligned_cols=71 Identities=11% Similarity=0.058 Sum_probs=41.4
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHc--CCEEEEEcCCCCCHHHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLL--GAEVRAVHSGTATLKDATSEAIRDW 250 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~--GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (439)
+.++++.++|.-|.++|......|.+++++..... ........++.. +.++..+...- ...+.+..+++..
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~~~Dl-~~~~~~~~~~~~~ 82 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLGADVLIVARDAD--ALAQARDELAEEFPEREVHGLAADV-SDDEDRRAILDWV 82 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHHhhCCCCeEEEEECCC-CCHHHHHHHHHHH
Confidence 35677788889999999999889998766654321 111122233333 66776665322 2233444444443
No 238
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=34.08 E-value=1.3e+02 Score=30.37 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=31.1
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv 230 (439)
.+++. ++|.-|.+++..++.+|...++++... ..|.+.++.+|++-+
T Consensus 187 ~vlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~~-----~~~~~~~~~~ga~~~ 233 (365)
T cd08277 187 TVAVF-GLGAVGLSAIMGAKIAGASRIIGVDIN-----EDKFEKAKEFGATDF 233 (365)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHcCCCcE
Confidence 44444 679999999999999998534443221 235556788888533
No 239
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=34.05 E-value=4.6e+02 Score=25.71 Aligned_cols=111 Identities=17% Similarity=0.171 Sum_probs=57.1
Q ss_pred CCCEEEEcCCchHHHHH-HHHHHh-cCCCcEEEEEecCCCCCCc-hhhhhhhhcCCeeeeccchhhhccccCCCccCCcc
Q 013596 296 KPDVLIACVGGGSNAMG-LFHEFV-NDKDVRLIGVEAAGFGLDS-GKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHS 372 (439)
Q Consensus 296 ~~d~vvvpvG~GG~~aG-i~~~~~-~~p~vrvigVep~~s~~~~-~~~~~sl~~G~~~~~~g~~~~~~~~~~g~~~~~~t 372 (439)
+||+++-.+|-+|.+.- +...+. ..+.+=|+.-.+-..-.++ ...+-.++.|+...-.|...+-... +|....+.-
T Consensus 106 kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~-~g~~~~~~Q 184 (254)
T cd00762 106 KPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVEL-NGGTYKPGQ 184 (254)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECCCCCCccc-CCceeeccc
Confidence 58999988885666643 333333 3455555555444331121 2334456667665555543332211 232222211
Q ss_pred cccccCCCCCCCchhhhhhcCCcEEEEeCHHHHHHHHHHHH
Q 013596 373 ISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYL 413 (439)
Q Consensus 373 ia~GL~~~~vg~~~~~l~~~~~~~~v~VsD~ea~~A~~~L~ 413 (439)
.=+-+-.|+++-. ......-.|+|+..+.|.+.|+
T Consensus 185 ~NN~~iFPGiglG------al~~~a~~itd~m~~aAA~aLA 219 (254)
T cd00762 185 GNNLYIFPGVALG------VILCRIRHITDDVFLSAAEAIA 219 (254)
T ss_pred ccceeeccchhhh------hHhhcCeECCHHHHHHHHHHHH
Confidence 1122223333322 1235677899999999999887
No 240
>PRK06198 short chain dehydrogenase; Provisional
Probab=33.67 E-value=4e+02 Score=24.86 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=42.0
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~ 249 (439)
+.++++..+|.-|..+|......|.+.++++..... ........++..|.++..+..+-.+ .+...++++.
T Consensus 7 k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~-~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~ 77 (260)
T PRK06198 7 KVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAE-KGEAQAAELEALGAKAVFVQADLSD-VEDCRRVVAA 77 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHH-HHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHH
Confidence 456778888899999999998999984555543221 1122233456678887655432222 3344444443
No 241
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=33.57 E-value=2.1e+02 Score=27.39 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=32.9
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEE
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~V 229 (439)
..+++...+|..|.+++..|+.+|.+.+..... ..+.+.++.+|+..
T Consensus 134 ~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~------~~~~~~~~~~g~~~ 180 (305)
T cd08270 134 RRVLVTGASGGVGRFAVQLAALAGAHVVAVVGS------PARAEGLRELGAAE 180 (305)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHHcCCcE
Confidence 455666666899999999999999985554332 23455577788863
No 242
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=33.33 E-value=4e+02 Score=24.73 Aligned_cols=134 Identities=19% Similarity=0.128 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHcCCeEEEE-ecCCchhhHHHHHHHHHHcCCEEEEEcCCC-CCHHHHHHHHHHHHHHccCCceEEeccc-
Q 013596 188 HGVATATVCARFGLQCIVY-MGAQDMERQALNVFRMRLLGAEVRAVHSGT-ATLKDATSEAIRDWVTNVETTHYILGSV- 264 (439)
Q Consensus 188 hG~AlA~aa~~~Gi~~~Iv-mP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~-~~~~da~~~a~~~~~~~~~~~~y~~~s~- 264 (439)
...++-.+|+.+|+...++ -...+.+.+...++.+-..|.+-+.+.... ....+..+++.+ . .=....+++.
T Consensus 16 ~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~----~-gIpvv~~d~~~ 90 (257)
T PF13407_consen 16 VIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKA----A-GIPVVTVDSDE 90 (257)
T ss_dssp HHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHH----T-TSEEEEESSTH
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhh----c-CceEEEEeccc
Confidence 3444555566677776664 333454445555556666666655554322 122333332221 1 1112222222
Q ss_pred CCCCCcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchHHH------HHHHHHHhcCCCcEEEE
Q 013596 265 AGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNA------MGLFHEFVNDKDVRLIG 327 (439)
Q Consensus 265 ~~~~p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~------aGi~~~~~~~p~vrvig 327 (439)
....+....+..-+...|..+++++.++.+....++++ .|.-+.. .|+..+++..|.++++.
T Consensus 91 ~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~~~v~~~-~~~~~~~~~~~r~~g~~~~l~~~~~~~~~~ 158 (257)
T PF13407_consen 91 APDSPRAAYVGTDNYEAGKLAAEYLAEKLGAKGKVLIL-SGSPGNPNTQERLEGFRDALKEYPGVEIVD 158 (257)
T ss_dssp HTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTTEEEEEE-ESSTTSHHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred cccccceeeeeccHHHHHHHHHHHHHHHhccCceEEec-cCCCCchHHHHHHHHHHHHHhhcceeeeee
Confidence 11111111222234567788888888888754344434 3322222 34444555567999988
No 243
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=33.10 E-value=1.8e+02 Score=28.68 Aligned_cols=48 Identities=17% Similarity=0.183 Sum_probs=32.4
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEE
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv 230 (439)
..+++...+|..|.+++..|+.+|++++++.... .+.+.++.+|++-+
T Consensus 167 ~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~------~~~~~~~~~g~~~v 214 (341)
T cd08297 167 DWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGD------EKLELAKELGADAF 214 (341)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCH------HHHHHHHHcCCcEE
Confidence 3455555556799999999999999866654432 23445677886543
No 244
>PRK12831 putative oxidoreductase; Provisional
Probab=33.07 E-value=1.1e+02 Score=32.37 Aligned_cols=53 Identities=15% Similarity=0.258 Sum_probs=36.8
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEecCCc--hhhHHHHHHHHHHcCCEEEEE
Q 013596 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQD--MERQALNVFRMRLLGAEVRAV 232 (439)
Q Consensus 180 Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~--~~~~~~k~~~m~~~GA~Vv~v 232 (439)
|+.-++||.|.-+|..+.++|.+++++..... .......++.++..|.+++.-
T Consensus 284 VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~ 338 (464)
T PRK12831 284 VAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLL 338 (464)
T ss_pred EEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEec
Confidence 44467999999999999999999888876431 111222344566778887653
No 245
>PRK07063 short chain dehydrogenase; Provisional
Probab=33.04 E-value=4.1e+02 Score=24.85 Aligned_cols=55 Identities=22% Similarity=0.080 Sum_probs=34.4
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHH--cCCEEEEEc
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRL--LGAEVRAVH 233 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~--~GA~Vv~v~ 233 (439)
+.++|+.++|--|.++|......|.+++++-.... ....-...++. .+.++..+.
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~ 64 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGAAVALADLDAA--LAERAAAAIARDVAGARVLAVP 64 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhccCCceEEEEE
Confidence 45778888888899999988889998776654321 11222233443 466665554
No 246
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=33.00 E-value=1.7e+02 Score=25.79 Aligned_cols=47 Identities=19% Similarity=0.134 Sum_probs=35.0
Q ss_pred eEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEc
Q 013596 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (439)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~ 233 (439)
+++..++|+.|..++-.....|.++++++.... |.+. ..+.+++..+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~------~~~~--~~~~~~~~~d 47 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPS------KAED--SPGVEIIQGD 47 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGG------GHHH--CTTEEEEESC
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCch------hccc--ccccccceee
Confidence 356677899999999999999999999997633 2222 4566666644
No 247
>PRK12827 short chain dehydrogenase; Provisional
Probab=32.80 E-value=3.9e+02 Score=24.51 Aligned_cols=58 Identities=19% Similarity=0.154 Sum_probs=37.3
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecC--CchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA--QDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~--~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
++++++.++|--|.++|......|.+++++... ...+....-.+.++..|.++..+..
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAF 66 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEc
Confidence 457788888999999999988899987765432 1111112222345566777766543
No 248
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=32.69 E-value=3.4e+02 Score=25.18 Aligned_cols=45 Identities=20% Similarity=0.113 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHh---C---CCeeEEecCcchHHHHHHHHHHHcCCeEEEE
Q 013596 162 NNAVGQALLAKRL---G---KTRIIAETGAGQHGVATATVCARFGLQCIVY 206 (439)
Q Consensus 162 Rga~~~~~~a~~~---g---~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~Iv 206 (439)
+|+.+.+..+.+. + +++.|+.-+.||-|..+|......|.+++++
T Consensus 7 ~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 7 YGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVA 57 (200)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 5665555544322 1 2234556788999999999999999987743
No 249
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=32.62 E-value=4.2e+02 Score=24.77 Aligned_cols=33 Identities=15% Similarity=0.023 Sum_probs=26.8
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~ 209 (439)
+.++|+.++|--|.++|......|.+++++-..
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~ 39 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIK 39 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCC
Confidence 457788888899999999998899987776543
No 250
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.62 E-value=4.7e+02 Score=27.15 Aligned_cols=67 Identities=18% Similarity=0.092 Sum_probs=41.9
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~ 249 (439)
+.++|+.++|.-|.++|....+.|.+++++-..... ....+....+|.+++.++..+ .+....+++.
T Consensus 211 ~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~---~~l~~~~~~~~~~~~~~Dv~~---~~~~~~~~~~ 277 (450)
T PRK08261 211 KVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAG---EALAAVANRVGGTALALDITA---PDAPARIAEH 277 (450)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccH---HHHHHHHHHcCCeEEEEeCCC---HHHHHHHHHH
Confidence 356777778899999999988999997776543221 111223445677887776532 3444444444
No 251
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=32.54 E-value=1.5e+02 Score=29.20 Aligned_cols=48 Identities=17% Similarity=0.305 Sum_probs=31.7
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
.+++. ++|--|.+++..++.+|.+-++++-.. +.|.+.++.+|++.+.
T Consensus 166 ~vlV~-G~G~vG~~~~~~ak~~G~~~vi~~~~~-----~~~~~~~~~~ga~~~i 213 (339)
T cd08239 166 TVLVV-GAGPVGLGALMLARALGAEDVIGVDPS-----PERLELAKALGADFVI 213 (339)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCEEEEECCC-----HHHHHHHHHhCCCEEE
Confidence 44454 678899999889999999833333221 2355567889986544
No 252
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=32.54 E-value=1.6e+02 Score=29.28 Aligned_cols=48 Identities=21% Similarity=0.162 Sum_probs=31.6
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
.+++. ++|..|.+++..|+.+|++.+++.... ..|.+.++.+|++.+.
T Consensus 175 ~vlI~-g~g~vG~~a~q~a~~~G~~~v~~~~~~-----~~~~~~~~~~ga~~~i 222 (351)
T cd08233 175 TALVL-GAGPIGLLTILALKAAGASKIIVSEPS-----EARRELAEELGATIVL 222 (351)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCEEEEECCC-----HHHHHHHHHhCCCEEE
Confidence 34444 578899999999999999544444322 2345556778886544
No 253
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=32.50 E-value=3.2e+02 Score=23.99 Aligned_cols=61 Identities=25% Similarity=0.233 Sum_probs=41.8
Q ss_pred HHHhCCCeeEEecCcchHHH-HHHHHHHHcCCeEEEEecCC---chhhHHHHHHHHHHcCCEEEE
Q 013596 171 AKRLGKTRIIAETGAGQHGV-ATATVCARFGLQCIVYMGAQ---DMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhG~-AlA~aa~~~Gi~~~IvmP~~---~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
+++.|.+.+|++.-..|.++ +.|.-+...|++++++-... +.+....-++.|+..|++|+.
T Consensus 83 L~~~gi~~lii~G~~T~~CV~~Ta~~a~~~g~~v~v~~Da~as~~~~~h~~al~~~~~~~~~v~~ 147 (157)
T cd01012 83 LKATGRKQVVLAGLETHVCVLQTALDLLEEGYEVFVVADACGSRSKEDHELALARMRQAGAVLTT 147 (157)
T ss_pred HHhcCCCEEEEEEeeccHHHHHHHHHHHHCCCEEEEEeeCCCCCCHHHHHHHHHHHHHCCCEEee
Confidence 34567777887766667664 45555777999998887652 223344567788899999864
No 254
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=32.31 E-value=1.7e+02 Score=29.82 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=31.5
Q ss_pred eEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEE
Q 013596 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
.|+..++|.-|.+++..|+.+|.+++++.+.. ..+.+.++.+|++.+.
T Consensus 181 ~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~-----~~~~~~a~~lGa~~~i 228 (375)
T PLN02178 181 RLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS-----EKEREAIDRLGADSFL 228 (375)
T ss_pred EEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh-----HHhHHHHHhCCCcEEE
Confidence 34445678899999889999999855554331 1234456788986543
No 255
>PRK08251 short chain dehydrogenase; Provisional
Probab=32.27 E-value=4.1e+02 Score=24.57 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=25.5
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecC
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~ 209 (439)
.++++.++|.-|.++|....+.|.+++++...
T Consensus 4 ~vlItGas~giG~~la~~l~~~g~~v~~~~r~ 35 (248)
T PRK08251 4 KILITGASSGLGAGMAREFAAKGRDLALCARR 35 (248)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence 46788888999999999988889876666543
No 256
>PRK07825 short chain dehydrogenase; Provisional
Probab=32.24 E-value=4.4e+02 Score=24.92 Aligned_cols=32 Identities=25% Similarity=0.199 Sum_probs=25.8
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEec
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP 208 (439)
+.++|+.++|.-|.++|......|.+++++..
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r 37 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDL 37 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEEC
Confidence 45778888889999999988888998766543
No 257
>PRK07774 short chain dehydrogenase; Provisional
Probab=32.10 E-value=4.1e+02 Score=24.54 Aligned_cols=55 Identities=24% Similarity=0.111 Sum_probs=35.2
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEc
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~ 233 (439)
+.++++.++|--|.++|......|.+++++...... ...-.+.++..+.+++.+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~--~~~~~~~~~~~~~~~~~~~ 61 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEG--AERVAKQIVADGGTAIAVQ 61 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHHHhcCCcEEEEE
Confidence 457788888999999999999999988777543211 1111223444465655443
No 258
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=31.97 E-value=3e+02 Score=26.60 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=33.9
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
.+++...+|..|.+++..++.+|.+.+++... ..+.+.++.+|++.+.
T Consensus 143 ~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~------~~~~~~~~~~g~~~~~ 190 (334)
T PTZ00354 143 SVLIHAGASGVGTAAAQLAEKYGAATIITTSS------EEKVDFCKKLAAIILI 190 (334)
T ss_pred EEEEEcCCchHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHHcCCcEEE
Confidence 45555557899999999999999987665433 2244456779986544
No 259
>PRK06138 short chain dehydrogenase; Provisional
Probab=31.90 E-value=4.2e+02 Score=24.51 Aligned_cols=70 Identities=17% Similarity=0.093 Sum_probs=40.9
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (439)
+.++|+.++|--|.++|......|.+++++.-... ........++ .|.++..+...- +-.+...++++..
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~--~~~~~~~~~~-~~~~~~~~~~D~-~~~~~~~~~~~~i 75 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAE--AAERVAAAIA-AGGRAFARQGDV-GSAEAVEALVDFV 75 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHH--HHHHHHHHHh-cCCeEEEEEcCC-CCHHHHHHHHHHH
Confidence 45778888899999999988888988666653321 1122223333 577666654322 2233444444443
No 260
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=31.76 E-value=1.9e+02 Score=29.17 Aligned_cols=47 Identities=17% Similarity=0.120 Sum_probs=30.3
Q ss_pred eEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEE
Q 013596 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
+++ .++|--|.+++..|+.+|.+.+++.... ..+...++.+|++.+.
T Consensus 184 vlV-~G~G~vG~~av~~Ak~~G~~vi~~~~~~-----~~~~~~~~~~Ga~~~i 230 (357)
T PLN02514 184 GGI-LGLGGVGHMGVKIAKAMGHHVTVISSSD-----KKREEALEHLGADDYL 230 (357)
T ss_pred EEE-EcccHHHHHHHHHHHHCCCeEEEEeCCH-----HHHHHHHHhcCCcEEe
Confidence 444 4678899999999999999865554331 1122345678986443
No 261
>PRK06500 short chain dehydrogenase; Provisional
Probab=31.62 E-value=4.2e+02 Score=24.44 Aligned_cols=52 Identities=13% Similarity=0.082 Sum_probs=34.4
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEc
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~ 233 (439)
+.++|+..+|.-|.++|......|.+++++-... +.. ....+.+|.++..+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~--~~~---~~~~~~~~~~~~~~~ 58 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRDP--ASL---EAARAELGESALVIR 58 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCH--HHH---HHHHHHhCCceEEEE
Confidence 4577888889999999999999999876654321 111 112344577766554
No 262
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=31.50 E-value=6.3e+02 Score=26.44 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=32.3
Q ss_pred eeEEecCcchHHHHHHHHHHH-cCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEc
Q 013596 178 RIIAETGAGQHGVATATVCAR-FGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~-~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~ 233 (439)
++++ .+.+....++|..... +|++.+.+...... .....+.++.+..++..++
T Consensus 292 rvai-~g~~~~~~~la~~L~eelGm~~v~v~t~~~~--~~~~~~~~~~l~~~~~v~~ 345 (427)
T PRK02842 292 RVFF-LPDSQLEIPLARFLSRECGMELVEVGTPYLN--RRFLAAELALLPDGVRIVE 345 (427)
T ss_pred EEEE-ECCchhHHHHHHHHHHhCCCEEEEeCCCCCC--HHHHHHHHHhccCCCEEEE
Confidence 4443 4566889999999888 99998877654321 1222233555544554444
No 263
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=31.26 E-value=4.7e+02 Score=26.71 Aligned_cols=14 Identities=50% Similarity=0.627 Sum_probs=10.6
Q ss_pred CCCEEEEcCCchHHH
Q 013596 296 KPDVLIACVGGGSNA 310 (439)
Q Consensus 296 ~~d~vvvpvG~GG~~ 310 (439)
.+|. |+.+|||+.+
T Consensus 83 ~~d~-IIaiGGGS~~ 96 (374)
T cd08189 83 GCDA-ILAVGGGSVI 96 (374)
T ss_pred CCCE-EEEeCCccHH
Confidence 3665 6779999887
No 264
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=31.16 E-value=1.1e+02 Score=31.04 Aligned_cols=64 Identities=19% Similarity=0.133 Sum_probs=41.6
Q ss_pred HHHhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCC
Q 013596 171 AKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTAT 238 (439)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~ 238 (439)
++..|.+..+ ..+||..+.-+|+.+..++=.-.|++|.-+. ..-...+...|++++.++....+
T Consensus 35 a~~~g~~~~~-~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~---~~~~~ai~~~G~~pv~~Di~~~~ 98 (363)
T PF01041_consen 35 AEYFGVKYAV-AVSSGTSALHLALRALGLGPGDEVIVPAYTF---PATASAILWAGAEPVFVDIDPET 98 (363)
T ss_dssp HHHHTSSEEE-EESSHHHHHHHHHHHTTGGTTSEEEEESSS----THHHHHHHHTT-EEEEE-BETTT
T ss_pred HHHhCCCeEE-EeCChhHHHHHHHHhcCCCcCceEecCCCcc---hHHHHHHHHhccEEEEEeccCCc
Confidence 4455777655 4678999988888874433336778887542 23445689999999999865333
No 265
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=30.99 E-value=1.8e+02 Score=27.00 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=28.3
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE 228 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~ 228 (439)
.+++...++ .|.+++..++..|.+++++.+.. .+.+.++.+|++
T Consensus 137 ~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~------~~~~~~~~~g~~ 180 (271)
T cd05188 137 TVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSD------EKLELAKELGAD 180 (271)
T ss_pred EEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCH------HHHHHHHHhCCc
Confidence 455555444 99999999999997766665432 233445666654
No 266
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=30.95 E-value=2.2e+02 Score=25.14 Aligned_cols=82 Identities=24% Similarity=0.145 Sum_probs=50.2
Q ss_pred CCeEEEEeCCCCCCCchhhhHHHHHHHHHHHhCCCeeEEecCcchHHH-HHHHHHHHcCCeEEEEecC---CchhhHHHH
Q 013596 143 GPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGV-ATATVCARFGLQCIVYMGA---QDMERQALN 218 (439)
Q Consensus 143 g~~IylK~E~~npTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~-AlA~aa~~~Gi~~~IvmP~---~~~~~~~~k 218 (439)
+..++-|. ..++|-.- .+...+++.|.+.+|++.-..+.++ +.|..+..+|++++|+-.. .+.+....-
T Consensus 86 ~~~vi~K~----~~saf~~t---~L~~~L~~~gi~~vil~G~~t~~CV~~Ta~~a~~~g~~v~v~~Da~~~~~~~~h~~~ 158 (174)
T PF00857_consen 86 GDPVIEKN----RYSAFFGT---DLDEILRKRGIDTVILCGVATDVCVLATARDAFDRGYRVIVVEDACASYSPEAHEAA 158 (174)
T ss_dssp TSEEEEES----SSSTTTTS---SHHHHHHHTTESEEEEEEESTTTHHHHHHHHHHHTT-EEEEEEEEEEBSSHHHHHHH
T ss_pred ccceEEee----cccccccc---cccccccccccceEEEcccccCcEEehhHHHHHHCCCEEEEEChhhcCCCHHHHHHH
Confidence 55667665 23444111 1233345567777887666666665 4555577799999988753 233445567
Q ss_pred HHHHHHcCCEEEE
Q 013596 219 VFRMRLLGAEVRA 231 (439)
Q Consensus 219 ~~~m~~~GA~Vv~ 231 (439)
+..|+..|++|+.
T Consensus 159 l~~l~~~~~~v~t 171 (174)
T PF00857_consen 159 LEELRKRGAEVIT 171 (174)
T ss_dssp HHHHHHHTSEEE-
T ss_pred HHHHHhCCCEEEe
Confidence 7789999999975
No 267
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=30.88 E-value=3.6e+02 Score=25.41 Aligned_cols=32 Identities=16% Similarity=0.046 Sum_probs=23.8
Q ss_pred CeeEEecCc--chHHHHHHHHHHHcCCeEEEEec
Q 013596 177 TRIIAETGA--GQHGVATATVCARFGLQCIVYMG 208 (439)
Q Consensus 177 ~~~Vv~aSs--GNhG~AlA~aa~~~Gi~~~IvmP 208 (439)
+.++|+.++ +.-|.++|....+.|.++++.-.
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecC
Confidence 345666655 57899999999899999777643
No 268
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=30.77 E-value=84 Score=32.96 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=29.8
Q ss_pred HHHHHHHHHHH-hC---CCeeEEecCcchHHHHHHHHHHHcCCeEEEEe
Q 013596 163 NAVGQALLAKR-LG---KTRIIAETGAGQHGVATATVCARFGLQCIVYM 207 (439)
Q Consensus 163 ga~~~~~~a~~-~g---~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~Ivm 207 (439)
|.++.+..+.+ .+ ....|+.-+.||-|+-+|.-....|-+++.+-
T Consensus 189 Gv~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~s 237 (411)
T COG0334 189 GVFYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVS 237 (411)
T ss_pred ehHHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEE
Confidence 55555544432 22 23456778899999999888877787777664
No 269
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=30.77 E-value=4.1e+02 Score=25.57 Aligned_cols=65 Identities=18% Similarity=0.166 Sum_probs=43.8
Q ss_pred HHHHhCCCeeEEecCcc-hHHHHHHHHHHHcC-Ce-EEEEecCC--chhhHHHHHHHHHHcCCEEEEEcC
Q 013596 170 LAKRLGKTRIIAETGAG-QHGVATATVCARFG-LQ-CIVYMGAQ--DMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 170 ~a~~~g~~~~Vv~aSsG-NhG~AlA~aa~~~G-i~-~~IvmP~~--~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
..++.|.+++|+.-|+| +..+..+.+.+.+| -+ .-|+||.. .......-....+.+|.+...++-
T Consensus 12 ~~~~~g~~~vVvglSGGiDSav~A~La~~Alg~~~v~~v~mp~~~~~~~~~~~A~~la~~lgi~~~~i~i 81 (242)
T PF02540_consen 12 YVKKSGAKGVVVGLSGGIDSAVVAALAVKALGPDNVLAVIMPSGFSSEEDIEDAKELAEKLGIEYIVIDI 81 (242)
T ss_dssp HHHHHTTSEEEEEETSSHHHHHHHHHHHHHHGGGEEEEEEEESSTSTHHHHHHHHHHHHHHTSEEEEEES
T ss_pred HHHHhCCCeEEEEcCCCCCHHHHHHHHHHHhhhccccccccccccCChHHHHHHHHHHHHhCCCeeccch
Confidence 34456778888888888 77777777777786 34 35788842 222223344557889999988864
No 270
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=30.65 E-value=1.4e+02 Score=31.51 Aligned_cols=48 Identities=21% Similarity=0.233 Sum_probs=34.3
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEE
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv 230 (439)
.+.|+..+.|.-|..+|..++.+|.+++++=+. +.+....+.+|++++
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d------~~R~~~A~~~G~~~~ 249 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVD------PICALQAAMEGYEVM 249 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC------hhhHHHHHhcCCEEc
Confidence 345666789999999999999999986554222 224445677898664
No 271
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=30.60 E-value=1.9e+02 Score=25.88 Aligned_cols=50 Identities=24% Similarity=0.335 Sum_probs=36.5
Q ss_pred eEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
.|+..++|+-|...|.++..+|.+.+++ +.. ..+.+..+.+++..+.++.
T Consensus 22 ~vvv~G~G~vg~gA~~~~~~lGa~v~~~--d~~----~~~~~~~~~~~~~~i~~~~ 71 (168)
T PF01262_consen 22 KVVVTGAGRVGQGAAEIAKGLGAEVVVP--DER----PERLRQLESLGAYFIEVDY 71 (168)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT-EEEEE--ESS----HHHHHHHHHTTTEESEETT
T ss_pred EEEEECCCHHHHHHHHHHhHCCCEEEec--cCC----HHHHHhhhcccCceEEEcc
Confidence 3455689999999999999999986654 332 2345568889998888753
No 272
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=30.59 E-value=1.4e+02 Score=28.57 Aligned_cols=52 Identities=15% Similarity=0.189 Sum_probs=33.9
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHc-CCEEEE
Q 013596 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLL-GAEVRA 231 (439)
Q Consensus 180 Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~-GA~Vv~ 231 (439)
|+.-++|+.|.-+|...+..+.+++++.+.......+.-.+.++.. |.+++.
T Consensus 144 v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~~l~~~~gv~~~~ 196 (300)
T TIGR01292 144 VAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAEKILLDRLRKNPNIEFLW 196 (300)
T ss_pred EEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCcCHHHHHHHHhCCCeEEEe
Confidence 4446789999999999999999999888753221122223345544 555543
No 273
>PRK07576 short chain dehydrogenase; Provisional
Probab=30.58 E-value=4.7e+02 Score=24.74 Aligned_cols=71 Identities=18% Similarity=0.183 Sum_probs=41.6
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (439)
+.++|+..+|.-|.++|......|.+++++....+ ........+...+.+++.+...- +-.+.+..+++..
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~Dv-~~~~~i~~~~~~~ 80 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQE--KVDAAVAQLQQAGPEGLGVSADV-RDYAAVEAAFAQI 80 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHHhCCceEEEECCC-CCHHHHHHHHHHH
Confidence 45778888889999999988889998777654322 11222234555666665544321 2233344444443
No 274
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=30.53 E-value=1.9e+02 Score=28.22 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=31.3
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
++++. ++|..|.+++..|+.+|+++++..+. ..+.+.++.+|++-+.
T Consensus 168 ~vli~-g~g~vG~~~~~la~~~G~~V~~~~~s------~~~~~~~~~~g~~~~~ 214 (338)
T cd08254 168 TVLVI-GLGGLGLNAVQIAKAMGAAVIAVDIK------EEKLELAKELGADEVL 214 (338)
T ss_pred EEEEE-CCcHHHHHHHHHHHHcCCEEEEEcCC------HHHHHHHHHhCCCEEE
Confidence 45554 57888999999999999985554433 2234456778875443
No 275
>PRK07102 short chain dehydrogenase; Provisional
Probab=30.52 E-value=3.8e+02 Score=24.84 Aligned_cols=32 Identities=16% Similarity=0.075 Sum_probs=26.5
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecC
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~ 209 (439)
+++++.++|.-|.++|......|.+++++...
T Consensus 3 ~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~ 34 (243)
T PRK07102 3 KILIIGATSDIARACARRYAAAGARLYLAARD 34 (243)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCC
Confidence 46788888999999999988899987777654
No 276
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=30.50 E-value=1.5e+02 Score=29.18 Aligned_cols=46 Identities=22% Similarity=0.339 Sum_probs=33.1
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~V 229 (439)
.+++ .++|..|.+++..|+.+|++.++.+... ..+.+.++.+|++-
T Consensus 171 ~vlI-~g~g~vg~~~~~lak~~G~~~v~~~~~~-----~~~~~~~~~~ga~~ 216 (345)
T cd08287 171 TVVV-VGDGAVGLCAVLAAKRLGAERIIAMSRH-----EDRQALAREFGATD 216 (345)
T ss_pred EEEE-ECCCHHHHHHHHHHHHcCCCEEEEECCC-----HHHHHHHHHcCCce
Confidence 4555 4689999999999999999866666543 23455677888843
No 277
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=30.46 E-value=1.6e+02 Score=31.07 Aligned_cols=54 Identities=22% Similarity=0.322 Sum_probs=37.0
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEe------cCCchhhHHHHHHHHHHcCCEEEE
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYM------GAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~Ivm------P~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
++++ .-++|..|.-+|...+.+|.+++++. |..+.+....-.+.++..|.+|+.
T Consensus 173 ~~vv-VIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~ 232 (466)
T PRK07818 173 KSIV-IAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILT 232 (466)
T ss_pred CeEE-EECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEE
Confidence 3444 45789999999999999999998875 332322223334557778877764
No 278
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=30.42 E-value=3.1e+02 Score=25.67 Aligned_cols=62 Identities=18% Similarity=0.121 Sum_probs=42.8
Q ss_pred HHHHhCCCeeEEecCcchHHHHH-HHHHHHcCCeEEEEecCC---chhhHHHHHHHHHHcCCEEEE
Q 013596 170 LAKRLGKTRIIAETGAGQHGVAT-ATVCARFGLQCIVYMGAQ---DMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 170 ~a~~~g~~~~Vv~aSsGNhG~Al-A~aa~~~Gi~~~IvmP~~---~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
.+++.|.+.++++.-..|+++.- |.-+..+|++++|+-... +.+..+.-++.|+..|++|+.
T Consensus 140 ~L~~~gi~~lvi~G~~t~~CV~~Ta~~a~~~g~~v~vv~Da~~~~~~~~~~~al~~~~~~g~~v~~ 205 (212)
T PTZ00331 140 ILKAHGVRRVFICGLAFDFCVLFTALDAVKLGFKVVVLEDATRAVDPDAISKQRAELLEAGVILLT 205 (212)
T ss_pred HHHHCCCCEEEEEEeccCHHHHHHHHHHHHCCCEEEEeCcCccCCCHHHHHHHHHHHHHCCCEEEe
Confidence 34556888888877777877754 444777999998877542 222334457788999998864
No 279
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=30.21 E-value=2.3e+02 Score=27.19 Aligned_cols=48 Identities=15% Similarity=0.233 Sum_probs=32.3
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
.+++...+|..|.++...|+.+|.+++.+.... .+.+.++.+|++-+.
T Consensus 145 ~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~------~~~~~~~~~g~~~~~ 192 (320)
T cd08243 145 TLLIRGGTSSVGLAALKLAKALGATVTATTRSP------ERAALLKELGADEVV 192 (320)
T ss_pred EEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCH------HHHHHHHhcCCcEEE
Confidence 455555568999999999999999865554431 234446678875443
No 280
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=29.88 E-value=1.9e+02 Score=28.53 Aligned_cols=48 Identities=27% Similarity=0.345 Sum_probs=33.1
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEE
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
+.+++...+|.-|++++..|+.+|.+++++... . +.+.++.+|++.+.
T Consensus 179 ~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~------~-~~~~~~~~g~~~~~ 226 (350)
T cd08274 179 ETVLVTGASGGVGSALVQLAKRRGAIVIAVAGA------A-KEEAVRALGADTVI 226 (350)
T ss_pred CEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc------h-hhHHHHhcCCeEEE
Confidence 345555556999999999999999996555421 1 44556778987443
No 281
>PRK07060 short chain dehydrogenase; Provisional
Probab=29.54 E-value=4.4e+02 Score=24.19 Aligned_cols=53 Identities=17% Similarity=0.107 Sum_probs=35.5
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
+.++++.++|.-|..+|......|.+++++..... .. .+.....+.+++.++.
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~----~~-~~~~~~~~~~~~~~D~ 62 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARNAA----AL-DRLAGETGCEPLRLDV 62 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHH----HH-HHHHHHhCCeEEEecC
Confidence 45777888889999999999999998776654311 11 1123445777777654
No 282
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=29.41 E-value=2.1e+02 Score=29.14 Aligned_cols=49 Identities=16% Similarity=0.155 Sum_probs=34.6
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEE
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
..+++...+|..|.+++..++.+|.+.+++.+. ..+.+.++.+|++.+.
T Consensus 195 ~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s------~~~~~~~~~~G~~~~i 243 (393)
T cd08246 195 DNVLIWGASGGLGSMAIQLARAAGANPVAVVSS------EEKAEYCRALGAEGVI 243 (393)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCC------HHHHHHHHHcCCCEEE
Confidence 345555546899999999999999997665432 2345567889986544
No 283
>PRK09134 short chain dehydrogenase; Provisional
Probab=29.31 E-value=4.8e+02 Score=24.42 Aligned_cols=56 Identities=20% Similarity=0.160 Sum_probs=36.4
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEc
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~ 233 (439)
+.++|+..+|.-|..+|....+.|.+++++.-.... ....-...++..|.++..+.
T Consensus 10 k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 65 (258)
T PRK09134 10 RAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRD-EAEALAAEIRALGRRAVALQ 65 (258)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHH-HHHHHHHHHHhcCCeEEEEE
Confidence 357788888899999999999999988776543211 11111223445577776554
No 284
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=29.28 E-value=6.2e+02 Score=25.73 Aligned_cols=14 Identities=36% Similarity=0.491 Sum_probs=10.6
Q ss_pred CCCEEEEcCCchHHH
Q 013596 296 KPDVLIACVGGGSNA 310 (439)
Q Consensus 296 ~~d~vvvpvG~GG~~ 310 (439)
.+|. |+.+|||+.+
T Consensus 81 ~~d~-IIaiGGGSvi 94 (370)
T cd08192 81 GCDG-VIAFGGGSAL 94 (370)
T ss_pred CCCE-EEEeCCchHH
Confidence 4666 5779999887
No 285
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=29.17 E-value=2.9e+02 Score=28.30 Aligned_cols=51 Identities=20% Similarity=0.149 Sum_probs=34.3
Q ss_pred EecCcchHHHHHHHHHHHcCCeEEEEecCCch-------hhHHHHHHHHHHcCCEEEE
Q 013596 181 AETGAGQHGVATATVCARFGLQCIVYMGAQDM-------ERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 181 v~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~-------~~~~~k~~~m~~~GA~Vv~ 231 (439)
+.-++|..|.-+|...+.+|.+++++.+.... .....-.+.++..|.+++.
T Consensus 148 vViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~ 205 (396)
T PRK09754 148 VIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILL 205 (396)
T ss_pred EEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 34578999999999999999999998764321 1112223445666766654
No 286
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=29.13 E-value=3.1e+02 Score=26.43 Aligned_cols=47 Identities=17% Similarity=0.308 Sum_probs=32.9
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv 230 (439)
.+++...+|..|.+++..|+.+|.+++++.+. ..+.+.++.+|++-+
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~------~~~~~~~~~~g~~~~ 195 (325)
T cd05280 149 PVLVTGATGGVGSIAVAILAKLGYTVVALTGK------EEQADYLKSLGASEV 195 (325)
T ss_pred EEEEECCccHHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHhcCCcEE
Confidence 55665556999999999999999985555443 224455678888544
No 287
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=29.04 E-value=2.3e+02 Score=28.31 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=32.3
Q ss_pred eEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEE
Q 013596 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
.|+..++|.-|.+++..++.+|.++++ +-. + ..+.+.++.+|++.+.
T Consensus 169 ~VlV~G~G~vG~~a~~~a~~~G~~vi~-~~~-~----~~~~~~~~~~Ga~~~i 215 (349)
T TIGR03201 169 LVIVIGAGGVGGYMVQTAKAMGAAVVA-IDI-D----PEKLEMMKGFGADLTL 215 (349)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEE-EcC-C----HHHHHHHHHhCCceEe
Confidence 444455699999999999999997443 322 1 2355667889997554
No 288
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=29.03 E-value=4.5e+02 Score=24.02 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=40.8
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (439)
..+|+..+|.-|..+|......|.+++++.-... .....-...+...+.++..+...- +..+....+++..
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~~~ 72 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGYRVAANCGPNE-ERAEAWLQEQGALGFDFRVVEGDV-SSFESCKAAVAKV 72 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCH-HHHHHHHHHHHhhCCceEEEEecC-CCHHHHHHHHHHH
Confidence 4567788899999999999899998777654221 111111223444566665554321 2233444444443
No 289
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=28.92 E-value=4.6e+02 Score=24.11 Aligned_cols=33 Identities=18% Similarity=0.084 Sum_probs=26.8
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~ 209 (439)
+.++|+.++|.-|.+++......|.+++++...
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~ 38 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRN 38 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 457788889999999999988899996666543
No 290
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=28.91 E-value=2.2e+02 Score=28.57 Aligned_cols=54 Identities=13% Similarity=0.009 Sum_probs=36.4
Q ss_pred eEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHH-HHHHcCCEEEEEc
Q 013596 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVF-RMRLLGAEVRAVH 233 (439)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~-~m~~~GA~Vv~v~ 233 (439)
+.+..-.+|...+++.+++++|++++++-|+.-.. +..-++ ..+..|.++...+
T Consensus 155 i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~-~~~~~~~~~~~~g~~~~~~~ 209 (304)
T PRK00779 155 VAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEP-DPEIVEKIAKETGASIEVTH 209 (304)
T ss_pred EEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCC-CHHHHHHHHHHcCCeEEEEc
Confidence 33333346899999999999999999999985211 111122 2466898887653
No 291
>PRK07904 short chain dehydrogenase; Provisional
Probab=28.79 E-value=4.5e+02 Score=24.85 Aligned_cols=55 Identities=18% Similarity=0.235 Sum_probs=32.5
Q ss_pred CeeEEecCcchHHHHHHHHHHHc-CCeEEEEecCCchhhHHHHHHHHHHcCC-EEEEE
Q 013596 177 TRIIAETGAGQHGVATATVCARF-GLQCIVYMGAQDMERQALNVFRMRLLGA-EVRAV 232 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~-Gi~~~IvmP~~~~~~~~~k~~~m~~~GA-~Vv~v 232 (439)
+.++++.++|--|.++|...... |.+++++....+.. .....+.++..|. ++..+
T Consensus 9 ~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~-~~~~~~~l~~~~~~~v~~~ 65 (253)
T PRK07904 9 QTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPR-RDAAVAQMKAAGASSVEVI 65 (253)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchh-HHHHHHHHHhcCCCceEEE
Confidence 34677777778888888887776 48877775443211 1222334555554 45444
No 292
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=28.71 E-value=1.6e+02 Score=29.28 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=33.1
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
.+++. ++|..|.+++..|+.+|.+.++.+-.. ..|.+.++.+|++-+.
T Consensus 163 ~vlV~-G~g~vG~~~~~~a~~~G~~~v~~~~~~-----~~~~~~~~~~Ga~~~i 210 (347)
T PRK10309 163 NVIII-GAGTIGLLAIQCAVALGAKSVTAIDIN-----SEKLALAKSLGAMQTF 210 (347)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCeEEEECCC-----HHHHHHHHHcCCceEe
Confidence 44444 679999999999999999865555332 2355567888986443
No 293
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=28.43 E-value=1.6e+02 Score=27.67 Aligned_cols=51 Identities=25% Similarity=0.339 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHhcCCCcEEEEEecCC
Q 013596 281 IGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAG 332 (439)
Q Consensus 281 ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~~~p~vrvigVep~~ 332 (439)
.+..++.+|.+ .+-.||+|++-.+||=-.+-+..-+..-.++..+.|+--.
T Consensus 15 ~~~~lA~kI~~-s~~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y~ 65 (192)
T COG2236 15 LCRALAEKIRA-SGFKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHYD 65 (192)
T ss_pred HHHHHHHHHHH-cCCCCCEEEEEcCCceehHHHHHHHhCCCceEEEEEEEeh
Confidence 44667777743 3457999988777777777777777755566777776444
No 294
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=28.30 E-value=2.4e+02 Score=28.36 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=36.0
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEE
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAV 232 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v 232 (439)
+.+++.+.+|.-|..+--.|+.+|...++..-. ..|.+.++.+||+.+.-
T Consensus 144 ~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s------~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 144 ETVLVHGAAGGVGSAAIQLAKALGATVVAVVSS------SEKLELLKELGADHVIN 193 (326)
T ss_pred CEEEEecCCchHHHHHHHHHHHcCCcEEEEecC------HHHHHHHHhcCCCEEEc
Confidence 456777778888888888899999844444332 23555799999977664
No 295
>PRK07775 short chain dehydrogenase; Provisional
Probab=28.18 E-value=5.3e+02 Score=24.55 Aligned_cols=56 Identities=20% Similarity=0.114 Sum_probs=36.8
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
+.++|+.++|--|.++|......|.+++++..... ....-...++..|.++..+..
T Consensus 11 ~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 66 (274)
T PRK07775 11 RPALVAGASSGIGAATAIELAAAGFPVALGARRVE--KCEELVDKIRADGGEAVAFPL 66 (274)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEEC
Confidence 45778888889999999988888998766654321 112122335567888776553
No 296
>PRK07201 short chain dehydrogenase; Provisional
Probab=28.17 E-value=4.1e+02 Score=29.05 Aligned_cols=73 Identities=16% Similarity=0.156 Sum_probs=43.3
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~ 252 (439)
+.++++.++|.-|.++|......|.+++++..... ......+.++..|.++..+...-. -.+.+..+++...+
T Consensus 372 k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~Dv~-~~~~~~~~~~~~~~ 444 (657)
T PRK07201 372 KVVLITGASSGIGRATAIKVAEAGATVFLVARNGE--ALDELVAEIRAKGGTAHAYTCDLT-DSAAVDHTVKDILA 444 (657)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCcEEEEEecCC-CHHHHHHHHHHHHH
Confidence 35678888889999999988888998777664421 122223345556777765543212 23344445444333
No 297
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=28.06 E-value=1.9e+02 Score=31.32 Aligned_cols=53 Identities=26% Similarity=0.358 Sum_probs=37.8
Q ss_pred eEEecCcchHHHHHHHHHHHcCCeEEEEecCC---------------chhhHHHHHHHHHHcCCEEEE
Q 013596 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQ---------------DMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~---------------~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
.|+.-++|-.|.+.|..++++|.+++|+=... ..+.....++.++.+|++++.
T Consensus 139 ~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~ 206 (564)
T PRK12771 139 RVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRL 206 (564)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence 35557899999999999999999977763211 011234466778899998765
No 298
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=28.05 E-value=4.7e+02 Score=23.95 Aligned_cols=100 Identities=9% Similarity=-0.014 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCC
Q 013596 189 GVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPH 268 (439)
Q Consensus 189 G~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~ 268 (439)
|..+.++++.+|.+..--++..+. -..-.+.....|..|..++.. .+..+.+.+.+.++..+- -+.+ . |
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~dl--~~~l~~~~~~~~~~vfllG~~----~~v~~~~~~~l~~~yP~l-~i~g-~---~ 81 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGPDL--MEELCQRAGKEKLPIFLYGGK----PDVLQQLKVKLIKEYPKL-KIVG-A---F 81 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChHHH--HHHHHHHHHHcCCeEEEECCC----HHHHHHHHHHHHHHCCCC-EEEE-E---C
Confidence 467888999998764323332221 112233345677889998653 233344444433333222 1222 1 3
Q ss_pred CcchhhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchH
Q 013596 269 PYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGS 308 (439)
Q Consensus 269 p~~~~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG 308 (439)
+|-. .-.. .+++++|.+ . .+|.|+|+.|.=-
T Consensus 82 g~f~---~~~~---~~i~~~I~~-s--~~dil~VglG~Pk 112 (177)
T TIGR00696 82 GPLE---PEER---KAALAKIAR-S--GAGIVFVGLGCPK 112 (177)
T ss_pred CCCC---hHHH---HHHHHHHHH-c--CCCEEEEEcCCcH
Confidence 3210 1111 445556633 3 4899999987643
No 299
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=28.01 E-value=2.4e+02 Score=27.70 Aligned_cols=46 Identities=15% Similarity=0.153 Sum_probs=30.4
Q ss_pred eeEEecCcchHHHHHHHHHHHcC-CeEEEEecCCchhhHHHHHHHHHHcCCEEE
Q 013596 178 RIIAETGAGQHGVATATVCARFG-LQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~G-i~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv 230 (439)
.+++. ++|..|.+++..|+.+| .+++++... ..+.+.++.+|++-+
T Consensus 170 ~vlI~-g~~~vg~~~~~~a~~~g~~~v~~~~~~------~~~~~~~~~~g~~~~ 216 (340)
T cd05284 170 TVVVI-GVGGLGHIAVQILRALTPATVIAVDRS------EEALKLAERLGADHV 216 (340)
T ss_pred EEEEE-cCcHHHHHHHHHHHHhCCCcEEEEeCC------HHHHHHHHHhCCcEE
Confidence 44554 46679999999999998 776555432 224455778887443
No 300
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=27.94 E-value=3.1e+02 Score=29.99 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=32.9
Q ss_pred CeeEEecCcch-HHHHHH--HHHHHcCCeEEEEecCCchh-hHHHHHHHHHHcCCEEE
Q 013596 177 TRIIAETGAGQ-HGVATA--TVCARFGLQCIVYMGAQDME-RQALNVFRMRLLGAEVR 230 (439)
Q Consensus 177 ~~~Vv~aSsGN-hG~AlA--~aa~~~Gi~~~IvmP~~~~~-~~~~k~~~m~~~GA~Vv 230 (439)
++++|.++.|| -|=+++ ......|.++.|++|+.... ....+..+++.+|..+.
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~~~~~~~~~~~~~~~~~~~gi~~~ 193 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTAKPLYTGLVTQLESLSVPFV 193 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEcCCCCcHHHHHHHHHHHHcCCCee
Confidence 35777788885 444444 44555799999999873211 11224566777776653
No 301
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=27.91 E-value=4.8e+02 Score=26.48 Aligned_cols=111 Identities=21% Similarity=0.313 Sum_probs=52.0
Q ss_pred EEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHH--HHHHHHHHHHHccCCceEEecccCCCCCcchhhhhhhHH
Q 013596 203 CIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKD--ATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAV 280 (439)
Q Consensus 203 ~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~d--a~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~g~~~ 280 (439)
..|++..+..+.. -+.++.+| ++..+... .+.. ..+..... +++..-...+.+.. ..+|-.. .
T Consensus 2 ~~i~~G~g~l~~l---~~~l~~~g-r~lvVt~~--~~~~~~~~~~v~~~-L~~~~i~~~~~~~~-~~~p~~~-----~-- 66 (366)
T PF00465_consen 2 TKIIFGRGALEEL---GEELKRLG-RVLVVTDP--SLSKSGLVDRVLDA-LEEAGIEVQVFDGV-GPNPTLE-----D-- 66 (366)
T ss_dssp SEEEESTTGGGGH---HHHHHCTT-EEEEEEEH--HHHHHTHHHHHHHH-HHHTTCEEEEEEEE-SSS-BHH-----H--
T ss_pred CcEEEccCHHHHH---HHHHHhcC-CEEEEECc--hHHhCccHHHHHHH-HhhCceEEEEEecC-CCCCcHH-----H--
Confidence 4567776653321 22467778 88887642 2222 22333222 22222233333323 2344311 1
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCchHHH-HHHHHHH-hcCC----------------CcEEEEEecCCC
Q 013596 281 IGKETRRQALEKWGGKPDVLIACVGGGSNA-MGLFHEF-VNDK----------------DVRLIGVEAAGF 333 (439)
Q Consensus 281 ig~E~~~Qi~e~~g~~~d~vvvpvG~GG~~-aGi~~~~-~~~p----------------~vrvigVep~~s 333 (439)
-.++.+++ ++. .+|. |+.+|||+.+ ++=+.++ ..++ ...+|.|-+...
T Consensus 67 -v~~~~~~~-~~~--~~D~-IIaiGGGS~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~g 132 (366)
T PF00465_consen 67 -VDEAAEQA-RKF--GADC-IIAIGGGSVMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAG 132 (366)
T ss_dssp -HHHHHHHH-HHT--TSSE-EEEEESHHHHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSS
T ss_pred -HHHHHHHH-Hhc--CCCE-EEEcCCCCcCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCcc
Confidence 13444443 333 4774 5678988887 2222222 2322 268888887654
No 302
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=27.90 E-value=1.3e+02 Score=27.13 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCC--chhhHHHH--HHHHHHcC---CEEEEEcCC
Q 013596 163 NAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQ--DMERQALN--VFRMRLLG---AEVRAVHSG 235 (439)
Q Consensus 163 ga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~--~~~~~~~k--~~~m~~~G---A~Vv~v~~~ 235 (439)
++...+..+++.|.+-.++ ||++-......++.+|+.-.++.... . |..| ...++.++ .+|..++.+
T Consensus 131 ~~~~~l~~L~~~Gi~~~i~---TGD~~~~a~~~~~~lgi~~~~v~a~~~~k---P~~k~~~~~i~~l~~~~~~v~~vGDg 204 (215)
T PF00702_consen 131 GAKEALQELKEAGIKVAIL---TGDNESTASAIAKQLGIFDSIVFARVIGK---PEPKIFLRIIKELQVKPGEVAMVGDG 204 (215)
T ss_dssp THHHHHHHHHHTTEEEEEE---ESSEHHHHHHHHHHTTSCSEEEEESHETT---THHHHHHHHHHHHTCTGGGEEEEESS
T ss_pred hhhhhhhhhhccCcceeee---ecccccccccccccccccccccccccccc---ccchhHHHHHHHHhcCCCEEEEEccC
Confidence 4666677777777654444 47666666677889999655555554 4 3445 66677776 478888753
No 303
>PRK05854 short chain dehydrogenase; Provisional
Probab=27.89 E-value=5.4e+02 Score=25.27 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=24.6
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~ 209 (439)
+.+||+.+++--|.++|....+.|.+++++-..
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~~Vil~~R~ 47 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGAEVILPVRN 47 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 456777777778888888888889887766543
No 304
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=27.66 E-value=4.8e+02 Score=26.03 Aligned_cols=55 Identities=20% Similarity=0.205 Sum_probs=36.1
Q ss_pred CCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHH-HHHHHcCC-E-EEEEc
Q 013596 176 KTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNV-FRMRLLGA-E-VRAVH 233 (439)
Q Consensus 176 ~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~-~~m~~~GA-~-Vv~v~ 233 (439)
.+.++||..|.-=|.++|+.-.+.|.+.+++..... +-.++ +.++..|+ + |+.+.
T Consensus 12 ~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~r---rl~~v~~~l~~~~~~~~v~~~~ 69 (282)
T KOG1205|consen 12 GKVVLITGASSGIGEALAYELAKRGAKLVLVARRAR---RLERVAEELRKLGSLEKVLVLQ 69 (282)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhh---hHHHHHHHHHHhCCcCccEEEe
Confidence 344556655556899999999999999999987643 22233 45555554 4 55544
No 305
>PRK06180 short chain dehydrogenase; Provisional
Probab=27.60 E-value=5.4e+02 Score=24.48 Aligned_cols=32 Identities=13% Similarity=0.058 Sum_probs=26.6
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEec
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP 208 (439)
+.++|+.++|.-|.+++......|.+++++..
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r 36 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVR 36 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeC
Confidence 45788888899999999998889999777654
No 306
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=27.56 E-value=2.1e+02 Score=27.76 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=30.5
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~V 229 (439)
.+++...+|.-|++++..|+.+|.+.+++.... .+.+.++.+|++-
T Consensus 142 ~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~------~~~~~~~~~g~~~ 187 (324)
T cd08292 142 WLIQNAAGGAVGKLVAMLAAARGINVINLVRRD------AGVAELRALGIGP 187 (324)
T ss_pred EEEEcccccHHHHHHHHHHHHCCCeEEEEecCH------HHHHHHHhcCCCE
Confidence 344545568899999999999999876665432 2334455567643
No 307
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=27.55 E-value=2.2e+02 Score=27.82 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=30.7
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~V 229 (439)
.+++ .++|.-|.+++..++.+|++++++.+.. .+.+.++.+|++-
T Consensus 170 ~vlV-~g~g~vg~~~~~la~~~g~~v~~~~~~~------~~~~~~~~~g~~~ 214 (329)
T cd08298 170 RLGL-YGFGASAHLALQIARYQGAEVFAFTRSG------EHQELARELGADW 214 (329)
T ss_pred EEEE-ECCcHHHHHHHHHHHHCCCeEEEEcCCh------HHHHHHHHhCCcE
Confidence 4444 4678899998889999998876665442 2344467788743
No 308
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=27.53 E-value=2.5e+02 Score=28.65 Aligned_cols=48 Identities=8% Similarity=0.093 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHHcCCeEEEEec-CCchhhHHH--H-HHHHHHcCCEEEEEc
Q 013596 186 GQHGVATATVCARFGLQCIVYMG-AQDMERQAL--N-VFRMRLLGAEVRAVH 233 (439)
Q Consensus 186 GNhG~AlA~aa~~~Gi~~~IvmP-~~~~~~~~~--k-~~~m~~~GA~Vv~v~ 233 (439)
+|...+++.++.++|++++++-| +.-...+.. + .+..+..|.++....
T Consensus 185 ~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 236 (335)
T PRK04523 185 TAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSH 236 (335)
T ss_pred cHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 37899999999999999999999 642110111 0 112356788887764
No 309
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=27.43 E-value=2.3e+02 Score=27.16 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=32.6
Q ss_pred eeEEecCcc---hHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCC
Q 013596 178 RIIAETGAG---QHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGA 227 (439)
Q Consensus 178 ~~Vv~aSsG---NhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA 227 (439)
.+|.+.|.| -+.+|||.||++-|=+.+-++|+... +..-.+.|..+|.
T Consensus 44 liVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~--~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 44 LIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQS--LSEYKKALGEAGL 94 (218)
T ss_pred EEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhh--HHHHHHHHhhccc
Confidence 344333555 37899999999999999999998421 2233445666675
No 310
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=27.24 E-value=1.8e+02 Score=28.86 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=32.1
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv 230 (439)
.+++. ++|..|.+++..|+.+|.+.++.+... ..+.+..+.+|++.+
T Consensus 169 ~vlI~-g~g~iG~~~~~lak~~G~~~v~~~~~~-----~~~~~~~~~~g~~~~ 215 (351)
T cd08285 169 TVAVF-GIGPVGLMAVAGARLRGAGRIIAVGSR-----PNRVELAKEYGATDI 215 (351)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHcCCceE
Confidence 44454 678999999999999999755555432 234556777887543
No 311
>CHL00194 ycf39 Ycf39; Provisional
Probab=27.17 E-value=2.5e+02 Score=27.65 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=27.3
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecC
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~ 209 (439)
+++|+.++|.-|..++......|.+++++...
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 46788889999999999988899998888754
No 312
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=26.88 E-value=68 Score=31.17 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=24.6
Q ss_pred CCEEEEcCCchHHHHHHHHHHhcCCCcEEEEEecCCCC
Q 013596 297 PDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFG 334 (439)
Q Consensus 297 ~d~vvvpvG~GG~~aGi~~~~~~~p~vrvigVep~~s~ 334 (439)
.|+|||..|.||.+.+- .+...+..+|..+|.....
T Consensus 1 yD~iIVGsG~~G~v~A~--rLs~~~~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVAS--RLSEAGNKKVLVLEAGPRY 36 (296)
T ss_dssp EEEEEES-SHHHHHHHH--HHTTSTTS-EEEEESSBSC
T ss_pred CCEEEECcCHHHHHHHH--HHhhCCCCcEEEEEccccC
Confidence 48999999988875322 2335677899999988764
No 313
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=26.79 E-value=3.9e+02 Score=22.55 Aligned_cols=57 Identities=25% Similarity=0.261 Sum_probs=33.8
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecC-CchhhHHH-HHHHHHHcCCEEEEEcC
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGA-QDMERQAL-NVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~-~~~~~~~~-k~~~m~~~GA~Vv~v~~ 234 (439)
.++++.++|..|.+++......|...++++-. ........ -...++..|.++..+..
T Consensus 2 ~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (180)
T smart00822 2 TYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVAC 60 (180)
T ss_pred EEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEEC
Confidence 35677788889999998888888754444422 11110111 12445566777766643
No 314
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=26.78 E-value=2.2e+02 Score=30.07 Aligned_cols=54 Identities=22% Similarity=0.280 Sum_probs=36.5
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEe------cCCchhhHHHHHHHHHHcCCEEEE
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYM------GAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~Ivm------P~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
++++ .-++|..|.-+|...+++|.+++++- |..+.+....-.+.++..|-+++.
T Consensus 175 ~~vv-IIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~ 234 (466)
T PRK06115 175 KHLV-VIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKL 234 (466)
T ss_pred CeEE-EECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEE
Confidence 3444 45799999999999999999999874 322222223334567777776653
No 315
>PRK09291 short chain dehydrogenase; Provisional
Probab=26.73 E-value=3.4e+02 Score=25.30 Aligned_cols=32 Identities=22% Similarity=0.171 Sum_probs=27.3
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecC
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~ 209 (439)
.++|+.++|.-|.+++......|.+++++...
T Consensus 4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~ 35 (257)
T PRK09291 4 TILITGAGSGFGREVALRLARKGHNVIAGVQI 35 (257)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 47788889999999999999999988877654
No 316
>PHA02554 13 neck protein; Provisional
Probab=26.69 E-value=83 Score=31.49 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 013596 214 RQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (439)
Q Consensus 214 ~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (439)
+++.|-..+|.+||-|+.++..++-..|++++|++.+.+.
T Consensus 8 p~eLkD~iLRrLGAPii~Ievt~dQi~D~I~rALely~EY 47 (311)
T PHA02554 8 PRELKDYILRRLGAPIINVEVTEDQIYDCIQRALELYGEY 47 (311)
T ss_pred HHHHHHHHHHhcCCCeeEeecCHHHHHHHHHHHHHHHHHH
Confidence 4677888999999999999886666789999999876553
No 317
>PLN02827 Alcohol dehydrogenase-like
Probab=26.68 E-value=2.2e+02 Score=28.94 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=31.7
Q ss_pred eEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEE
Q 013596 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (439)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv 230 (439)
.|+..++|--|.+++..|+.+|.+.++.+... ..|.+.++.+|++-+
T Consensus 196 ~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~-----~~~~~~a~~lGa~~~ 242 (378)
T PLN02827 196 SVVIFGLGTVGLSVAQGAKLRGASQIIGVDIN-----PEKAEKAKTFGVTDF 242 (378)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEECCC-----HHHHHHHHHcCCcEE
Confidence 34344678899888888999998655554322 235566788898644
No 318
>PRK06482 short chain dehydrogenase; Provisional
Probab=26.64 E-value=5.5e+02 Score=24.27 Aligned_cols=32 Identities=6% Similarity=-0.040 Sum_probs=26.6
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecC
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~ 209 (439)
.++|+.++|.-|.++|......|.+++++...
T Consensus 4 ~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~ 35 (276)
T PRK06482 4 TWFITGASSGFGRGMTERLLARGDRVAATVRR 35 (276)
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46788888999999999988899988777644
No 319
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=26.64 E-value=92 Score=23.63 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=21.5
Q ss_pred CcchHHHHHHHHHHHcCCeEEEEecC
Q 013596 184 GAGQHGVATATVCARFGLQCIVYMGA 209 (439)
Q Consensus 184 SsGNhG~AlA~aa~~~Gi~~~IvmP~ 209 (439)
++|=.|.+.|+..++.|.+++|+=-.
T Consensus 3 GaG~sGl~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 3 GAGISGLAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEEESS
T ss_pred eeCHHHHHHHHHHHHCCCcEEEEecC
Confidence 68899999999999999988887544
No 320
>PLN02702 L-idonate 5-dehydrogenase
Probab=26.61 E-value=2.5e+02 Score=28.18 Aligned_cols=48 Identities=25% Similarity=0.358 Sum_probs=33.6
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
.+++. ++|.-|.++...++.+|.+.++.+... ..|.+.++.+|++.+.
T Consensus 184 ~vlI~-g~g~vG~~~~~~a~~~G~~~v~~~~~~-----~~~~~~~~~~g~~~~~ 231 (364)
T PLN02702 184 NVLVM-GAGPIGLVTMLAARAFGAPRIVIVDVD-----DERLSVAKQLGADEIV 231 (364)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCEEEEECCC-----HHHHHHHHHhCCCEEE
Confidence 34444 678899999889999999865655432 3355567888987654
No 321
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=26.59 E-value=1.7e+02 Score=28.38 Aligned_cols=47 Identities=19% Similarity=0.318 Sum_probs=32.9
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv 230 (439)
.+++...+|..|.+++..|+.+|+++++.... ..+.+.++.+|++-+
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~------~~~~~~~~~~g~~~v 195 (326)
T cd08289 149 PVLVTGATGGVGSLAVSILAKLGYEVVASTGK------ADAADYLKKLGAKEV 195 (326)
T ss_pred EEEEEcCCchHHHHHHHHHHHCCCeEEEEecC------HHHHHHHHHcCCCEE
Confidence 45565556999999999999999986555433 224555778887544
No 322
>PRK00768 nadE NAD synthetase; Reviewed
Probab=26.30 E-value=5.8e+02 Score=25.18 Aligned_cols=66 Identities=11% Similarity=0.008 Sum_probs=38.9
Q ss_pred HHHHHhCCCeeEEecCcc-hHHHHHHHHHHHc---CC--------eEEEEecCCchhhHHHHHHHHHHcCC-EEEEEcC
Q 013596 169 LLAKRLGKTRIIAETGAG-QHGVATATVCARF---GL--------QCIVYMGAQDMERQALNVFRMRLLGA-EVRAVHS 234 (439)
Q Consensus 169 ~~a~~~g~~~~Vv~aSsG-NhG~AlA~aa~~~---Gi--------~~~IvmP~~~~~~~~~k~~~m~~~GA-~Vv~v~~ 234 (439)
....+.|.+.+|+.-|+| +.++..+.+...+ +. -..+.||..............+.+|. +...++-
T Consensus 31 ~~l~~~g~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~~~~~~~~~l~mP~~~~~~~~da~~la~~lgi~~~~~i~I 109 (268)
T PRK00768 31 DYLKKSGLKSLVLGISGGQDSTLAGRLAQLAVEELRAETGDDDYQFIAVRLPYGVQADEDDAQDALAFIQPDRVLTVNI 109 (268)
T ss_pred HHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHHhcccccCcceeEEEEECCCCCcCCHHHHHHHHHhcCCCeeEEEEC
Confidence 344556777788888888 6666555443333 31 24567885422212334456788998 6766654
No 323
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=26.27 E-value=2.1e+02 Score=28.81 Aligned_cols=48 Identities=23% Similarity=0.202 Sum_probs=31.9
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
.+++. ++|.-|.+++..|+.+|.+.++..... ..|.+.++.+|++.+.
T Consensus 189 ~vlI~-g~g~vG~~~~~la~~~G~~~v~~~~~~-----~~k~~~~~~~g~~~~i 236 (365)
T cd08278 189 SIAVF-GAGAVGLAAVMAAKIAGCTTIIAVDIV-----DSRLELAKELGATHVI 236 (365)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHcCCcEEe
Confidence 34444 678899998889999999755544332 2355567778875443
No 324
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=26.17 E-value=2.2e+02 Score=27.67 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=34.6
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
.+++...+|..|++++..|+.+|.+++++... +.|.+.++.+|++-+.
T Consensus 149 ~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~~------~~~~~~~~~~g~~~~~ 196 (324)
T cd08288 149 PVLVTGAAGGVGSVAVALLARLGYEVVASTGR------PEEADYLRSLGASEII 196 (324)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEeCC------HHHHHHHHhcCCCEEE
Confidence 45565556999999999999999986665432 2355667889985443
No 325
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=25.87 E-value=1.9e+02 Score=29.50 Aligned_cols=49 Identities=18% Similarity=0.136 Sum_probs=34.4
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEE
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
..++|...+|.-|.+++..|+.+|.+.+++.+. ..+.+.++.+|+..+.
T Consensus 191 ~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~------~~~~~~~~~~g~~~~v 239 (398)
T TIGR01751 191 DNVLIWGAAGGLGSYATQLARAGGGNPVAVVSS------PEKAEYCRELGAEAVI 239 (398)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCC------HHHHHHHHHcCCCEEe
Confidence 345555556999999999999999987555432 2244557779987654
No 326
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=25.78 E-value=5.5e+02 Score=23.93 Aligned_cols=32 Identities=16% Similarity=-0.006 Sum_probs=26.4
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEec
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP 208 (439)
+.++|+.++|.-|.++|......|.+++++-.
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r 34 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGYRVAVADI 34 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 35778888899999999998889998777654
No 327
>PLN02253 xanthoxin dehydrogenase
Probab=25.76 E-value=5.7e+02 Score=24.26 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=26.6
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEec
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP 208 (439)
+.++|+.++|.-|.++|......|.+++++-.
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~~v~~~~~ 50 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGAKVCIVDL 50 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 45788888999999999998889998777643
No 328
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=25.76 E-value=85 Score=30.67 Aligned_cols=29 Identities=34% Similarity=0.446 Sum_probs=23.4
Q ss_pred EecCcchHHHHHHHHHHHcCCeEEEEecC
Q 013596 181 AETGAGQHGVATATVCARFGLQCIVYMGA 209 (439)
Q Consensus 181 v~aSsGNhG~AlA~aa~~~Gi~~~IvmP~ 209 (439)
+..++|=.|.++|.+.++.|++++|+=..
T Consensus 5 ~IvGaG~aGl~~A~~L~~~G~~v~i~E~~ 33 (356)
T PF01494_consen 5 AIVGAGPAGLAAALALARAGIDVTIIERR 33 (356)
T ss_dssp EEE--SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEECCCHHHHHHHHHHHhcccccccchhc
Confidence 34579999999999999999998888754
No 329
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=25.76 E-value=3.5e+02 Score=27.92 Aligned_cols=54 Identities=13% Similarity=0.209 Sum_probs=36.9
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCch-------hhHHHHHHHHHHcCCEEEE
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDM-------ERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~-------~~~~~k~~~m~~~GA~Vv~ 231 (439)
+++++ .++|..|..+|...++.|.+++++.+.... +....-.+.++..|.+++.
T Consensus 138 ~~vvV-iGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 198 (427)
T TIGR03385 138 ENVVI-IGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRL 198 (427)
T ss_pred CeEEE-ECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEe
Confidence 44444 479999999999999999999998765321 1122234457777877663
No 330
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=25.72 E-value=3.2e+02 Score=26.61 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=31.4
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
.+++. ++|.-|.+++..++.+|++++++.+.. .+.+.++.+|++.+.
T Consensus 165 ~vlI~-g~g~iG~~~~~~a~~~G~~v~~~~~~~------~~~~~~~~~g~~~~~ 211 (330)
T cd08245 165 RVAVL-GIGGLGHLAVQYARAMGFETVAITRSP------DKRELARKLGADEVV 211 (330)
T ss_pred EEEEE-CCCHHHHHHHHHHHHCCCEEEEEeCCH------HHHHHHHHhCCcEEe
Confidence 34454 677799999999999999876665432 234456777765443
No 331
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=25.44 E-value=5.4e+02 Score=23.75 Aligned_cols=33 Identities=21% Similarity=0.168 Sum_probs=27.3
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~ 209 (439)
+.++++..+|.-|.++|......|.+++++...
T Consensus 9 k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~ 41 (252)
T PRK08220 9 KTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQA 41 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence 457788888899999999998899988877543
No 332
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=25.21 E-value=3.4e+02 Score=24.38 Aligned_cols=61 Identities=18% Similarity=0.154 Sum_probs=39.2
Q ss_pred HHHhCCCeeEEecCcchHHH-HHHHHHHHcCCeEEEEecCCc---hhhHHHHHHHHHHcCCEEEE
Q 013596 171 AKRLGKTRIIAETGAGQHGV-ATATVCARFGLQCIVYMGAQD---MERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhG~-AlA~aa~~~Gi~~~IvmP~~~---~~~~~~k~~~m~~~GA~Vv~ 231 (439)
+++.|.+++|++.-..|.++ +.|.-|..+|++++|+--... .+....-+..|+..+++|+.
T Consensus 109 L~~~gi~~vvi~G~~t~~CV~~Ta~~A~~~Gy~v~vv~Da~a~~~~~~h~~al~~l~~~~~~v~~ 173 (179)
T cd01015 109 LTARGVDTLIVAGCSTSGCIRATAVDAMQHGFRPIVVRECVGDRAPAPHEANLFDIDNKYGDVVS 173 (179)
T ss_pred HHHcCCCEEEEeeecccHhHHHHHHHHHHCCCeEEEeeccccCCCHHHHHHHHHHHHhhceeecc
Confidence 45668888888777778776 566668889999988775422 12223334445555666643
No 333
>PRK09186 flagellin modification protein A; Provisional
Probab=25.17 E-value=5.5e+02 Score=23.76 Aligned_cols=33 Identities=18% Similarity=0.060 Sum_probs=26.9
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~ 209 (439)
+.++|+.++|.-|.++|......|.+++++...
T Consensus 5 k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~ 37 (256)
T PRK09186 5 KTILITGAGGLIGSALVKAILEAGGIVIAADID 37 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecC
Confidence 457788888999999999999999987776543
No 334
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=25.14 E-value=2.3e+02 Score=28.02 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=30.4
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE 228 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~ 228 (439)
.+++.. +|..|.++...++.+|++++++.... .+.+.++.+|++
T Consensus 168 ~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~~~------~~~~~~~~~g~~ 211 (345)
T cd08260 168 WVAVHG-CGGVGLSAVMIASALGARVIAVDIDD------DKLELARELGAV 211 (345)
T ss_pred EEEEEC-CCHHHHHHHHHHHHcCCeEEEEeCCH------HHHHHHHHhCCC
Confidence 455544 78999999999999999876665432 234446667873
No 335
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=25.11 E-value=3.1e+02 Score=26.78 Aligned_cols=47 Identities=21% Similarity=0.216 Sum_probs=30.8
Q ss_pred eeEEecCcchHHHHHHHHHHHc-CCeEEEEecCCchhhHHHHHHHHHHcCCEEE
Q 013596 178 RIIAETGAGQHGVATATVCARF-GLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~-Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv 230 (439)
.+++...+|..|.+++..|+.+ |++++.+... ..+.+.++.+|++-+
T Consensus 151 ~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~------~~~~~~l~~~g~~~~ 198 (336)
T TIGR02817 151 ALLIIGGAGGVGSILIQLARQLTGLTVIATASR------PESQEWVLELGAHHV 198 (336)
T ss_pred EEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCc------HHHHHHHHHcCCCEE
Confidence 4555555688888888888887 8886665443 124445677887543
No 336
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=25.05 E-value=2.7e+02 Score=27.52 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=31.6
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
.+++ .+.|..|.+++..++.+|++++++.+. ..+.+.++.+|++-+.
T Consensus 172 ~vlV-~g~g~vG~~~~~~a~~~G~~v~~~~~~------~~~~~~~~~~g~~~vi 218 (337)
T cd05283 172 RVGV-VGIGGLGHLAVKFAKALGAEVTAFSRS------PSKKEDALKLGADEFI 218 (337)
T ss_pred EEEE-ECCcHHHHHHHHHHHHcCCeEEEEcCC------HHHHHHHHHcCCcEEe
Confidence 4555 457899999999999999976555433 1234456678876443
No 337
>PRK06953 short chain dehydrogenase; Provisional
Probab=24.84 E-value=5.2e+02 Score=23.55 Aligned_cols=51 Identities=16% Similarity=0.132 Sum_probs=35.5
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
.++++.++|.-|.++|......|.+++++.... .+.+.++..+.+++.++-
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~------~~~~~~~~~~~~~~~~D~ 53 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRADGWRVIATARDA------AALAALQALGAEALALDV 53 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHhCCCEEEEEECCH------HHHHHHHhccceEEEecC
Confidence 467788889999999988878899877765431 233345556777766654
No 338
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=24.72 E-value=7.5e+02 Score=25.14 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=18.6
Q ss_pred CCCEEEEcCCchHHH--HHHHHHHhcCCCcEEEEEecC
Q 013596 296 KPDVLIACVGGGSNA--MGLFHEFVNDKDVRLIGVEAA 331 (439)
Q Consensus 296 ~~d~vvvpvG~GG~~--aGi~~~~~~~p~vrvigVep~ 331 (439)
.+|. |+++|||+.+ ++.++... .+.+|.|-+.
T Consensus 84 ~~d~-IIavGGGsv~D~aK~iA~~~---~~p~i~IPTt 117 (366)
T PRK09423 84 GCDV-VIGIGGGKTLDTAKAVADYL---GVPVVIVPTI 117 (366)
T ss_pred CCCE-EEEecChHHHHHHHHHHHHc---CCCEEEeCCc
Confidence 3565 5679999887 44433322 3456666653
No 339
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=24.71 E-value=3.6e+02 Score=27.28 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=35.0
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCch-------hhHHHHHHHHHHcCCEEEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDM-------ERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~-------~~~~~k~~~m~~~GA~Vv~ 231 (439)
+++ .-++|..|.-+|...+..|.+++++.+.... .....-.+.++..|.+++.
T Consensus 143 ~vv-ViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~ 202 (377)
T PRK04965 143 RVL-VVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLL 202 (377)
T ss_pred eEE-EECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEE
Confidence 344 3578999999999999999999999875321 1111123445666766653
No 340
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.66 E-value=2.7e+02 Score=28.51 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=32.7
Q ss_pred CcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 184 GAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 184 SsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
+.|-.|.---..|+.+|.+++++-... ..|.+.++.+||++.....
T Consensus 189 GlGGLGh~aVq~AKAMG~rV~vis~~~-----~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 189 GLGGLGHMAVQYAKAMGMRVTVISTSS-----KKKEEAIKSLGADVFVDST 234 (360)
T ss_pred cCcccchHHHHHHHHhCcEEEEEeCCc-----hhHHHHHHhcCcceeEEec
Confidence 344366554456888999999886542 2366779999999988754
No 341
>PRK07024 short chain dehydrogenase; Provisional
Probab=24.59 E-value=5.8e+02 Score=23.84 Aligned_cols=31 Identities=19% Similarity=0.137 Sum_probs=25.3
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEec
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP 208 (439)
+++++.++|--|.++|....+.|.+++++-.
T Consensus 4 ~vlItGas~gIG~~la~~l~~~G~~v~~~~r 34 (257)
T PRK07024 4 KVFITGASSGIGQALAREYARQGATLGLVAR 34 (257)
T ss_pred EEEEEcCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 5778888889999999998888998766653
No 342
>PRK06057 short chain dehydrogenase; Provisional
Probab=24.53 E-value=5.8e+02 Score=23.78 Aligned_cols=32 Identities=25% Similarity=0.134 Sum_probs=26.2
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEec
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP 208 (439)
+.++|+.++|.-|.+++......|.+++++.-
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r 39 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDI 39 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 45778888899999999998889998777643
No 343
>PRK06924 short chain dehydrogenase; Provisional
Probab=24.46 E-value=4.4e+02 Score=24.41 Aligned_cols=32 Identities=19% Similarity=0.093 Sum_probs=26.2
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecC
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~ 209 (439)
.++++.++|.-|.++|....+.|.+++++-..
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g~~V~~~~r~ 34 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKGTHVISISRT 34 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcCCEEEEEeCC
Confidence 46788888999999999988899987776543
No 344
>PRK06484 short chain dehydrogenase; Validated
Probab=24.39 E-value=5.7e+02 Score=26.99 Aligned_cols=69 Identities=20% Similarity=0.175 Sum_probs=39.7
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~ 251 (439)
+.++|+.+++.-|.++|......|.+++++-.... . -.+..+.+|.++..+...- +-.+.+..+++...
T Consensus 6 k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~----~-~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~~~~ 74 (520)
T PRK06484 6 RVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVE----R-ARERADSLGPDHHALAMDV-SDEAQIREGFEQLH 74 (520)
T ss_pred eEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH----H-HHHHHHHhCCceeEEEecc-CCHHHHHHHHHHHH
Confidence 45677777778999999998899998776643211 1 1123445577665443321 22344444554433
No 345
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=24.26 E-value=7.9e+02 Score=25.23 Aligned_cols=14 Identities=57% Similarity=0.881 Sum_probs=10.8
Q ss_pred CCCEEEEcCCchHHH
Q 013596 296 KPDVLIACVGGGSNA 310 (439)
Q Consensus 296 ~~d~vvvpvG~GG~~ 310 (439)
.+|. |+.+|||+.+
T Consensus 79 ~~D~-IIaiGGGS~i 92 (386)
T cd08191 79 GPDV-IIGLGGGSCI 92 (386)
T ss_pred CCCE-EEEeCCchHH
Confidence 4676 6779999987
No 346
>PRK07326 short chain dehydrogenase; Provisional
Probab=24.24 E-value=5.5e+02 Score=23.43 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=26.2
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEec
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP 208 (439)
+.++++.++|.-|.++|......|.+++++..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r 38 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITAR 38 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeC
Confidence 45778888899999999998888999776653
No 347
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=24.20 E-value=5.1e+02 Score=26.50 Aligned_cols=31 Identities=13% Similarity=0.047 Sum_probs=17.9
Q ss_pred CeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 201 LQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 201 i~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
.+..|+..++..... -+.++.+|-++..+..
T Consensus 3 ~p~~i~fG~g~l~~l---~~~~~~~g~r~livt~ 33 (380)
T cd08185 3 QPTKIVFGAGKLNEL---GEEALKPGKKALIVTG 33 (380)
T ss_pred CCCeEEECcCHHHHH---HHHHHhcCCeEEEEeC
Confidence 355667776654321 1235667878877764
No 348
>PLN02342 ornithine carbamoyltransferase
Probab=24.19 E-value=2.9e+02 Score=28.35 Aligned_cols=45 Identities=11% Similarity=0.008 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCC-EEEEE
Q 013596 187 QHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGA-EVRAV 232 (439)
Q Consensus 187 NhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA-~Vv~v 232 (439)
|...+++.+++++|++++++-|+.-.. +..-++..+.+|. ++...
T Consensus 205 nva~Sli~~~~~~G~~v~~~~P~~~~~-~~~~~~~a~~~g~~~~~~~ 250 (348)
T PLN02342 205 NIVHSWLLLAAVLPFHFVCACPKGYEP-DAKTVEKARAAGISKIEIT 250 (348)
T ss_pred hhHHHHHHHHHHcCCEEEEECCccccc-CHHHHHHHHHhCCCcEEEE
Confidence 799999999999999999999985311 2223444556674 66554
No 349
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=24.16 E-value=7.6e+02 Score=25.02 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=21.5
Q ss_pred CCCEEEEcCCchHHH--HHHHHHHhc---------------CCCcEEEEEecCC
Q 013596 296 KPDVLIACVGGGSNA--MGLFHEFVN---------------DKDVRLIGVEAAG 332 (439)
Q Consensus 296 ~~d~vvvpvG~GG~~--aGi~~~~~~---------------~p~vrvigVep~~ 332 (439)
.+|. |+.+|||+.+ +...+.+.. .+.+.+|.|-+..
T Consensus 80 ~~d~-IiaiGGGs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~ 132 (370)
T cd08551 80 GCDG-VIAVGGGSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTA 132 (370)
T ss_pred CCCE-EEEeCCchHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCC
Confidence 3676 6779999887 333333221 2356788777654
No 350
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.03 E-value=2.7e+02 Score=29.34 Aligned_cols=50 Identities=30% Similarity=0.395 Sum_probs=33.7
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEE
Q 013596 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (439)
Q Consensus 180 Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv 230 (439)
|+..+.|..|.++|.+.+..|.+++++-.... .......+.++..|.+++
T Consensus 19 v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~-~~~~~~~~~l~~~gv~~~ 68 (480)
T PRK01438 19 VVVAGLGVSGFAAADALLELGARVTVVDDGDD-ERHRALAAILEALGATVR 68 (480)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-hhhHHHHHHHHHcCCEEE
Confidence 34457899999999999999999877643321 112223345777787664
No 351
>PRK00509 argininosuccinate synthase; Provisional
Probab=23.83 E-value=8.6e+02 Score=25.50 Aligned_cols=57 Identities=14% Similarity=0.162 Sum_probs=33.6
Q ss_pred CeeEEecCcc-hHHHHHHHHHHHcCCeEEEEecCC-chhhHHHHHHHHHHcCC-EEEEEc
Q 013596 177 TRIIAETGAG-QHGVATATVCARFGLQCIVYMGAQ-DMERQALNVFRMRLLGA-EVRAVH 233 (439)
Q Consensus 177 ~~~Vv~aSsG-NhG~AlA~aa~~~Gi~~~IvmP~~-~~~~~~~k~~~m~~~GA-~Vv~v~ 233 (439)
+++++..|+| ++...+.++...+|.+++.|.=.. .......-.+..+.+|+ +.+.++
T Consensus 3 ~kVvva~SGGlDSsvla~~l~e~lG~eViavt~d~Gq~~dle~a~~~A~~lGi~~~~viD 62 (399)
T PRK00509 3 KKVVLAYSGGLDTSVIIKWLKETYGCEVIAFTADVGQGEELEPIREKALKSGASEIYVED 62 (399)
T ss_pred CeEEEEEcCCHHHHHHHHHHHHhhCCeEEEEEEecCCHHHHHHHHHHHHHcCCCeEEEEc
Confidence 4678888888 566665555555688876655331 11112223345788998 566554
No 352
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=23.74 E-value=2.6e+02 Score=27.24 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=30.2
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE 228 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~ 228 (439)
.+++. ++|..|.+++..|+.+|++++++--... ..+.+.++.+|++
T Consensus 167 ~vlI~-g~g~~g~~~~~la~~~G~~v~~~~~~~~----~~~~~~~~~~g~~ 212 (306)
T cd08258 167 TVVVF-GPGPIGLLAAQVAKLQGATVVVVGTEKD----EVRLDVAKELGAD 212 (306)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCEEEEECCCCC----HHHHHHHHHhCCc
Confidence 45564 4789999999999999998543312211 2345567778863
No 353
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=23.72 E-value=2.7e+02 Score=28.10 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=32.0
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~V 229 (439)
.+++ .+.|.-|.+++..++.+|.+.++++... ..|.+.++.+|+.+
T Consensus 179 ~vlI-~g~g~vg~~~~~~a~~~G~~~vi~~~~~-----~~~~~~~~~~g~~~ 224 (375)
T cd08282 179 TVAV-FGAGPVGLMAAYSAILRGASRVYVVDHV-----PERLDLAESIGAIP 224 (375)
T ss_pred EEEE-ECCCHHHHHHHHHHHHcCCCEEEEECCC-----HHHHHHHHHcCCeE
Confidence 4455 5678999999999999998544444332 34566678899854
No 354
>PRK08227 autoinducer 2 aldolase; Validated
Probab=23.67 E-value=6.7e+02 Score=24.70 Aligned_cols=91 Identities=15% Similarity=0.095 Sum_probs=51.4
Q ss_pred CeEEEEeCCCCCCC-chhhhHHHHHHHHHHHhCCCeeEEecCcc--h------HHHHHHHHHHHcCCeEEEEecCCc-hh
Q 013596 144 PHIYLKREDLNHTG-AHKINNAVGQALLAKRLGKTRIIAETGAG--Q------HGVATATVCARFGLQCIVYMGAQD-ME 213 (439)
Q Consensus 144 ~~IylK~E~~npTG-SfK~Rga~~~~~~a~~~g~~~~Vv~aSsG--N------hG~AlA~aa~~~Gi~~~IvmP~~~-~~ 213 (439)
..+-+|+..-.... .-.....+..+..|.++|.+.+.+.-==| + .-..++..|.++|+++++++|.+. ..
T Consensus 75 ~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~ 154 (264)
T PRK08227 75 KPVVLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMV 154 (264)
T ss_pred CcEEEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcC
Confidence 44566665432211 11223344446778888887554322222 1 233455668899999999888742 11
Q ss_pred h----HHHHHHHHHHcCCEEEEEcC
Q 013596 214 R----QALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 214 ~----~~~k~~~m~~~GA~Vv~v~~ 234 (439)
. -..-.+.--.+||+|+.+..
T Consensus 155 ~~~~~ia~aaRiaaELGADiVK~~y 179 (264)
T PRK08227 155 RDARYFSLATRIAAEMGAQIIKTYY 179 (264)
T ss_pred chHHHHHHHHHHHHHHcCCEEecCC
Confidence 1 11123345579999999875
No 355
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=23.13 E-value=1.7e+02 Score=27.41 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHhcCCCcEEEEEecCCC
Q 013596 283 KETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGF 333 (439)
Q Consensus 283 ~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~~~p~vrvigVep~~s 333 (439)
.|+....+..+...++-++.=+|.|+...++-.+ +..|..|+|++|....
T Consensus 20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~ 69 (187)
T COG2242 20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEE 69 (187)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHH
Confidence 5665555666776787788888877777777665 5689999999997654
No 356
>PRK06260 threonine synthase; Validated
Probab=23.06 E-value=8.4e+02 Score=25.14 Aligned_cols=36 Identities=8% Similarity=-0.045 Sum_probs=27.2
Q ss_pred CCeeEEecCcchHHHHHHHHHHHcC--------CeEEEEecCCc
Q 013596 176 KTRIIAETGAGQHGVATATVCARFG--------LQCIVYMGAQD 211 (439)
Q Consensus 176 ~~~~Vv~aSsGNhG~AlA~aa~~~G--------i~~~IvmP~~~ 211 (439)
.+.+|+-.++|-+..+++.+.+.+. .+.+.+-|.+.
T Consensus 218 pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~ 261 (397)
T PRK06260 218 PDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGA 261 (397)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCC
Confidence 5678888888888888888877653 47788888764
No 357
>PRK06847 hypothetical protein; Provisional
Probab=23.06 E-value=1.1e+02 Score=30.80 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=24.0
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEe
Q 013596 180 IAETGAGQHGVATATVCARFGLQCIVYM 207 (439)
Q Consensus 180 Vv~aSsGNhG~AlA~aa~~~Gi~~~Ivm 207 (439)
|+.-++|-.|.++|...++.|++++|+=
T Consensus 7 V~IVGaG~aGl~~A~~L~~~g~~v~v~E 34 (375)
T PRK06847 7 VLIVGGGIGGLSAAIALRRAGIAVDLVE 34 (375)
T ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEe
Confidence 3345799999999999999999998874
No 358
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=23.01 E-value=1.2e+02 Score=27.83 Aligned_cols=30 Identities=33% Similarity=0.464 Sum_probs=24.4
Q ss_pred EecCcchHHHHHHHHHHHcCCeEEEEecCC
Q 013596 181 AETGAGQHGVATATVCARFGLQCIVYMGAQ 210 (439)
Q Consensus 181 v~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~ 210 (439)
..-++|.-|.++|..+...|++++++=+..
T Consensus 3 ~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 3 AVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred EEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 345789999999999999999999998763
No 359
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=22.99 E-value=8.3e+02 Score=25.02 Aligned_cols=14 Identities=36% Similarity=0.724 Sum_probs=10.9
Q ss_pred CCCEEEEcCCchHHH
Q 013596 296 KPDVLIACVGGGSNA 310 (439)
Q Consensus 296 ~~d~vvvpvG~GG~~ 310 (439)
.+| +|+++|||+.+
T Consensus 87 ~~D-~IIaiGGGS~i 100 (382)
T PRK10624 87 GAD-YLIAIGGGSPQ 100 (382)
T ss_pred CCC-EEEEeCChHHH
Confidence 467 56789999988
No 360
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=22.97 E-value=92 Score=32.58 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=22.2
Q ss_pred EecCcchHHHHHHHHHHHcCCeEEEEecCC
Q 013596 181 AETGAGQHGVATATVCARFGLQCIVYMGAQ 210 (439)
Q Consensus 181 v~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~ 210 (439)
+..++|-.|.+.|.+|++.|.++.++=+..
T Consensus 3 VVvGgG~aG~~AAi~AAr~G~~VlLiE~~~ 32 (428)
T PF12831_consen 3 VVVGGGPAGVAAAIAAARAGAKVLLIEKGG 32 (428)
T ss_dssp EEE--SHHHHHHHHHHHHTTS-EEEE-SSS
T ss_pred EEECccHHHHHHHHHHHHCCCEEEEEECCc
Confidence 346799999999999999999999987543
No 361
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=22.94 E-value=3.5e+02 Score=23.44 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=34.9
Q ss_pred HHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHH
Q 013596 189 GVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAI 247 (439)
Q Consensus 189 G~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~ 247 (439)
|..+|-.....|++++|.---+. . -...++..|-+|+..+. .+.+|++....
T Consensus 54 G~~~a~~l~~~gvdvvi~~~iG~---~--a~~~l~~~GIkv~~~~~--~~V~e~i~~~~ 105 (121)
T COG1433 54 GIRIAELLVDEGVDVVIASNIGP---N--AYNALKAAGIKVYVAPG--GTVEEAIKAFL 105 (121)
T ss_pred hHHHHHHHHHcCCCEEEECccCH---H--HHHHHHHcCcEEEecCC--CCHHHHHHHHh
Confidence 45667777888888877653332 2 23448999999999876 46777665443
No 362
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=22.93 E-value=7.2e+02 Score=24.48 Aligned_cols=50 Identities=24% Similarity=0.245 Sum_probs=35.1
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCC
Q 013596 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235 (439)
Q Consensus 180 Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~ 235 (439)
|..-++|+.|.++|......|.+++++-.....+ .. +.+ -+++|+.+...
T Consensus 7 I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~~-~~---~~~--~~advvi~~vp 56 (308)
T PRK14619 7 IAILGAGAWGSTLAGLASANGHRVRVWSRRSGLS-LA---AVL--ADADVIVSAVS 56 (308)
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEeCCCCCC-HH---HHH--hcCCEEEEECC
Confidence 4445899999999999999999998887653211 11 112 26888887653
No 363
>PRK05875 short chain dehydrogenase; Provisional
Probab=22.93 E-value=6.5e+02 Score=23.75 Aligned_cols=33 Identities=12% Similarity=0.109 Sum_probs=26.9
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~ 209 (439)
+.++|+.++|.-|.++|......|.+++++...
T Consensus 8 k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~ 40 (276)
T PRK05875 8 RTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRN 40 (276)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 457788888999999999998899987776543
No 364
>PRK09126 hypothetical protein; Provisional
Probab=22.86 E-value=93 Score=31.55 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=23.7
Q ss_pred EecCcchHHHHHHHHHHHcCCeEEEEe
Q 013596 181 AETGAGQHGVATATVCARFGLQCIVYM 207 (439)
Q Consensus 181 v~aSsGNhG~AlA~aa~~~Gi~~~Ivm 207 (439)
+..++|-.|.++|.+.++.|++++|+=
T Consensus 7 iIvGgG~aGl~~A~~L~~~G~~v~v~E 33 (392)
T PRK09126 7 VVVGAGPAGLSFARSLAGSGLKVTLIE 33 (392)
T ss_pred EEECcCHHHHHHHHHHHhCCCcEEEEe
Confidence 345799999999999999999998875
No 365
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=22.78 E-value=2.2e+02 Score=28.71 Aligned_cols=45 Identities=20% Similarity=0.258 Sum_probs=30.7
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE 228 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~ 228 (439)
.+++. ++|..|.+++..|+.+|.+.++..... ..+.+.++.+|++
T Consensus 186 ~vlI~-g~g~vG~~a~~~a~~~G~~~v~~~~~~-----~~~~~~~~~~g~~ 230 (365)
T cd05279 186 TCAVF-GLGGVGLSVIMGCKAAGASRIIAVDIN-----KDKFEKAKQLGAT 230 (365)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHhCCC
Confidence 44454 678999999999999998765554321 2344556778874
No 366
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=22.77 E-value=3.2e+02 Score=26.77 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=31.1
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE 228 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~ 228 (439)
.+++. ++|-.|.++...++.+|++.++..... ..|.+.++.+|++
T Consensus 164 ~VlI~-g~g~vg~~~~~la~~~G~~~v~~~~~~-----~~~~~~~~~~g~~ 208 (341)
T cd08262 164 VALVI-GCGPIGLAVIAALKARGVGPIVASDFS-----PERRALALAMGAD 208 (341)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCcEEEEECCC-----HHHHHHHHHcCCc
Confidence 44454 568889888888999998866665442 2345556778874
No 367
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism]
Probab=22.66 E-value=1.1e+02 Score=31.01 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=29.1
Q ss_pred ccCCCCCCCCCCCCCCCCccCCCCcccccccccc
Q 013596 58 AKKESDPAPWQRPDVFGRFGRFGGKFVPETLMYA 91 (439)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~g~~GG~~vPe~l~~~ 91 (439)
|.+..-|+.|...|-.--|+.||+..+|+.-..+
T Consensus 58 f~aak~pIewd~~dv~~~~~~~~~~~ip~~~~es 91 (365)
T KOG0785|consen 58 FEAAKVPIEWDFIDVTPIKGPFGGKAIPDEAVES 91 (365)
T ss_pred HHhcCCCcceeeeeccccccCCCCccCCHHHHHH
Confidence 6678889999999999999999999999984433
No 368
>PRK06101 short chain dehydrogenase; Provisional
Probab=22.65 E-value=5.1e+02 Score=24.02 Aligned_cols=31 Identities=19% Similarity=0.141 Sum_probs=25.2
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEec
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP 208 (439)
.++++.++|--|.++|..-...|.+++++-.
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~~V~~~~r 33 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGWQVIACGR 33 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEEEC
Confidence 4678888899999999888889999776643
No 369
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=22.44 E-value=2.8e+02 Score=28.79 Aligned_cols=54 Identities=22% Similarity=0.202 Sum_probs=36.6
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCC------chhhHHHHHHHHHHcCCEEEE
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQ------DMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~------~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
++++ .-++|..|..+|...+++|.+++++-+.. +.+....-.+.++..|.+++.
T Consensus 158 ~~vv-IIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~ 217 (438)
T PRK07251 158 ERLG-IIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLL 217 (438)
T ss_pred CeEE-EECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEc
Confidence 3444 45789999999999999999999987542 222122233457778877653
No 370
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.41 E-value=6e+02 Score=23.19 Aligned_cols=33 Identities=15% Similarity=0.075 Sum_probs=27.9
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~ 209 (439)
+.++++.++|.-|.+++......|.+++++...
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~ 38 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRN 38 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 457788888999999999999999988877654
No 371
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=22.32 E-value=2.9e+02 Score=29.93 Aligned_cols=48 Identities=17% Similarity=0.104 Sum_probs=36.3
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEc
Q 013596 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (439)
Q Consensus 180 Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~ 233 (439)
++..+.|+.|+.+|-.-+..|.+++++=.+ +.+++..+.+|.+++.-+
T Consensus 420 iiI~G~G~~G~~la~~L~~~g~~vvvId~d------~~~~~~~~~~g~~~i~GD 467 (558)
T PRK10669 420 ALLVGYGRVGSLLGEKLLAAGIPLVVIETS------RTRVDELRERGIRAVLGN 467 (558)
T ss_pred EEEECCChHHHHHHHHHHHCCCCEEEEECC------HHHHHHHHHCCCeEEEcC
Confidence 445789999999999999999998776543 235566778888887744
No 372
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=22.31 E-value=8.1e+02 Score=24.66 Aligned_cols=32 Identities=25% Similarity=0.352 Sum_probs=19.0
Q ss_pred CCCEEEEcCCchHHH--HHHHHHHhcCCCcEEEEEecC
Q 013596 296 KPDVLIACVGGGSNA--MGLFHEFVNDKDVRLIGVEAA 331 (439)
Q Consensus 296 ~~d~vvvpvG~GG~~--aGi~~~~~~~p~vrvigVep~ 331 (439)
.+| +|+++|||+.+ ++.+.... .+.+|.|-+.
T Consensus 76 ~~D-~iIavGGGs~~D~aK~ia~~~---~~p~i~VPTT 109 (347)
T cd08172 76 GAD-VIIGIGGGKVLDTAKAVADRL---GVPVITVPTL 109 (347)
T ss_pred CCC-EEEEeCCcHHHHHHHHHHHHh---CCCEEEecCc
Confidence 466 56779988877 44333322 3456666654
No 373
>PRK08264 short chain dehydrogenase; Validated
Probab=22.13 E-value=4.2e+02 Score=24.32 Aligned_cols=33 Identities=9% Similarity=-0.020 Sum_probs=26.9
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCC-eEEEEecC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGL-QCIVYMGA 209 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi-~~~IvmP~ 209 (439)
+.++++.++|.-|.++|....+.|. +++++...
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence 4578888899999999999999998 76666543
No 374
>PRK07856 short chain dehydrogenase; Provisional
Probab=22.13 E-value=6.3e+02 Score=23.48 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=26.6
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecC
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~ 209 (439)
+.++++.++|--|.++|......|.+++++...
T Consensus 7 k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~ 39 (252)
T PRK07856 7 RVVLVTGGTRGIGAGIARAFLAAGATVVVCGRR 39 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 457788888899999999988899987776543
No 375
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=22.07 E-value=2.9e+02 Score=27.98 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=29.9
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE 228 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~ 228 (439)
.+++. ++|.-|.+++..++.+|++-++++... +.+.+.++.+|++
T Consensus 193 ~VlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~~-----~~~~~~a~~lGa~ 237 (373)
T cd08299 193 TCAVF-GLGGVGLSAIMGCKAAGASRIIAVDIN-----KDKFAKAKELGAT 237 (373)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcCC-----HHHHHHHHHcCCc
Confidence 34444 678999999999999998434444321 2345557778884
No 376
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=22.00 E-value=3.1e+02 Score=27.85 Aligned_cols=59 Identities=17% Similarity=0.158 Sum_probs=35.5
Q ss_pred HhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCC
Q 013596 173 RLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235 (439)
Q Consensus 173 ~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~ 235 (439)
..+.+.+++ .++|.+|..++..+...+-.-.|++|...- ......++..|++++.++..
T Consensus 43 ~~g~~~~v~-~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~---~~~~~~~~~~G~~~v~~d~d 101 (375)
T PRK11706 43 RFGSAKVLL-TPSCTAALEMAALLLDIQPGDEVIMPSYTF---VSTANAFVLRGAKIVFVDIR 101 (375)
T ss_pred HhCCCeEEE-ECCHHHHHHHHHHHhCCCCCCEEEECCCCc---HHHHHHHHHcCCEEEEEecC
Confidence 346565554 567888876655443223234677776431 22344578899999999754
No 377
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=21.87 E-value=5.2e+02 Score=26.88 Aligned_cols=54 Identities=13% Similarity=0.090 Sum_probs=36.4
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCC------chhhHHHHHHHHHHcCCEEEE
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQ------DMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~------~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
+++++ -++|..|.-+|...+++|.+++++.+.. +.+....-.+.++..|.+++.
T Consensus 149 ~~vvV-iGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~ 208 (438)
T PRK13512 149 DKALV-VGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRL 208 (438)
T ss_pred CEEEE-ECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEE
Confidence 44544 4689999999999999999999987642 111122233456677776653
No 378
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=21.85 E-value=2.4e+02 Score=29.89 Aligned_cols=47 Identities=15% Similarity=0.101 Sum_probs=32.7
Q ss_pred chHHHHHHHHHHHc-CCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEc
Q 013596 186 GQHGVATATVCARF-GLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (439)
Q Consensus 186 GNhG~AlA~aa~~~-Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~ 233 (439)
+|.+.+++.+++.+ |++++++-|+.-.. +..-++.++..|.+|..++
T Consensus 253 ~rv~~Sl~~~la~~~G~~v~l~~P~~~~~-~~~~~~~~~~~G~~v~~~~ 300 (429)
T PRK11891 253 GRTVHSLVKLLALYRGLKFTLVSPPTLEM-PAYIVEQISRNGHVIEQTD 300 (429)
T ss_pred ChHHHHHHHHHHHhcCCEEEEECCCcccc-CHHHHHHHHhcCCeEEEEc
Confidence 58899999996665 99999999985311 2222344556788887754
No 379
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=21.84 E-value=3.5e+02 Score=26.25 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=31.2
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEE
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~V 229 (439)
+.+++...+|-.|++++..++.+|.+++++... ..+.+.++.+|++-
T Consensus 141 ~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~------~~~~~~~~~~g~~~ 187 (329)
T cd08250 141 ETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSS------DEKAEFLKSLGCDR 187 (329)
T ss_pred CEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCc------HHHHHHHHHcCCce
Confidence 345565657889999999999999986555432 12334456677643
No 380
>PRK14694 putative mercuric reductase; Provisional
Probab=21.59 E-value=3.4e+02 Score=28.55 Aligned_cols=54 Identities=24% Similarity=0.231 Sum_probs=37.4
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCC-----chhhHHHHHHHHHHcCCEEEE
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQ-----DMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~-----~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
++++ .-++|..|.-+|...+.+|.+++++.+.. +++....-.+.++..|.+++.
T Consensus 179 ~~vv-ViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~l~~~l~~~GI~v~~ 237 (468)
T PRK14694 179 ERLL-VIGASVVALELAQAFARLGSRVTVLARSRVLSQEDPAVGEAIEAAFRREGIEVLK 237 (468)
T ss_pred CeEE-EECCCHHHHHHHHHHHHcCCeEEEEECCCCCCCCCHHHHHHHHHHHHhCCCEEEe
Confidence 3444 45789999999999999999999997641 222223344557777877654
No 381
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=21.59 E-value=3.7e+02 Score=26.89 Aligned_cols=47 Identities=17% Similarity=0.111 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHH----HHHcCCEEEEEc
Q 013596 186 GQHGVATATVCARFGLQCIVYMGAQDMERQALNVFR----MRLLGAEVRAVH 233 (439)
Q Consensus 186 GNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~----m~~~GA~Vv~v~ 233 (439)
.|...+++.+++++|++++++-|+.-.. +...++. .+..|+++...+
T Consensus 158 ~~v~~Sl~~~l~~~g~~v~~~~P~~~~~-~~~~~~~~~~~~~~~g~~~~~~~ 208 (304)
T TIGR00658 158 NNVCNSLMLAGAKLGMDVVVATPEGYEP-DADIVKKAQEIAKENGGSVELTH 208 (304)
T ss_pred CchHHHHHHHHHHcCCEEEEECCchhcC-CHHHHHHHHHHHHHcCCeEEEEc
Confidence 5899999999999999999999985311 1111222 355798887764
No 382
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=21.54 E-value=2.9e+02 Score=28.17 Aligned_cols=47 Identities=13% Similarity=0.076 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHcCCeEEEEecCCchhhHHH--H-HHHHHHcCCEEEEEc
Q 013596 187 QHGVATATVCARFGLQCIVYMGAQDMERQAL--N-VFRMRLLGAEVRAVH 233 (439)
Q Consensus 187 NhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~--k-~~~m~~~GA~Vv~v~ 233 (439)
|.+.++..+++++|++++++-|+.-...... + .+..+..|+++...+
T Consensus 168 ~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK12562 168 NMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTE 217 (334)
T ss_pred CHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 7899999999999999999999852111111 1 122355788887653
No 383
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=21.47 E-value=8.7e+02 Score=24.73 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=21.4
Q ss_pred CCCEEEEcCCchHHH--HHHHHHHhc---------------CCCcEEEEEecC
Q 013596 296 KPDVLIACVGGGSNA--MGLFHEFVN---------------DKDVRLIGVEAA 331 (439)
Q Consensus 296 ~~d~vvvpvG~GG~~--aGi~~~~~~---------------~p~vrvigVep~ 331 (439)
.+| +|+++|||+.+ +..++.+.. .+.+.+|.|-+.
T Consensus 83 ~~D-~IIaiGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 134 (376)
T cd08193 83 GAD-GVIGFGGGSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTT 134 (376)
T ss_pred CCC-EEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCC
Confidence 467 56789999988 434333321 235678887755
No 384
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=21.42 E-value=5.9e+02 Score=22.72 Aligned_cols=44 Identities=18% Similarity=0.074 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhCCCeeEEecCcc--hHHHHHHHHHHHcCCeEEEEe
Q 013596 163 NAVGQALLAKRLGKTRIIAETGAG--QHGVATATVCARFGLQCIVYM 207 (439)
Q Consensus 163 ga~~~~~~a~~~g~~~~Vv~aSsG--NhG~AlA~aa~~~Gi~~~Ivm 207 (439)
++..++... +.+++.+++..++| |.--+++-+....++++++++
T Consensus 46 aa~~aAg~~-~~~~~~~v~~~~sG~gn~~~~l~~a~~~~~~Pvl~i~ 91 (157)
T TIGR03845 46 GVGICAGAY-LAGKKPAILMQSSGLGNSINALASLNKTYGIPLPILA 91 (157)
T ss_pred HHHHHHHHH-HhcCCcEEEEeCCcHHHHHHHHHHHHHcCCCCEEEEE
Confidence 344333333 44554556666676 766666665557899999999
No 385
>PF04673 Cyclase_polyket: Polyketide synthesis cyclase; InterPro: IPR006765 Aromatic polyketides are assembled by a type II (iterative) polyketide synthase in bacteria. Iterative type II polyketide synthases produce polyketide chains of variable but defined length from a specific starter unit and a number of extender units. They also specify the initial regiospecific folding and cyclization pattern of nascent polyketides either through the action of a cyclase (CYC) subunit or through the combined action of site-specific ketoreductase and CYC subunits. Additional CYCs and other modifications may be necessary to produce linear aromatic polyketides. This family represents a number of cyclases involved in polyketide synthesis in a number of actinobacterial species. TcmI (P39890 from SWISSPROT) catalyses an aromatic rearrangement in the biosynthetic pathaway of tetracenomycin C from Streptomyces coelicolor. The protein is a homodimer where each subunit forms a beta-alpha-beta fold belonging to the ferrodoxin fold superfamily []. Four strands of antiparallel sheets and a layer of alpha helices create a cavity which was proposed to be the active site. This structure shows strong topological similarity to a polyketide monoxygenase (Q53908 from SWISSPROT) from S. coelicolor which functions in the actinorhodin biosynthesic pathway []. It was suggested, therefore, that this fold is well suited to serve as a framework for rearrangements and chemical modification of polyaromatic substrates.; GO: 0030639 polyketide biosynthetic process; PDB: 1TUW_A.
Probab=21.41 E-value=58 Score=27.13 Aligned_cols=41 Identities=20% Similarity=0.275 Sum_probs=29.6
Q ss_pred CCCCccccccccccHHHHHHHHHHhhCCchhHHHHHHHHhhhcC
Q 013596 78 RFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVG 121 (439)
Q Consensus 78 ~~GG~~vPe~l~~~l~~l~~a~~~~~~~~~f~~~~~~~i~~~ig 121 (439)
.|+|+|+ -|.-+-++...+..+.+.+|.|.++-++ +..||.
T Consensus 34 ~~~dLY~--HLiE~~~d~~~~i~~ar~~P~F~~is~~-L~~yi~ 74 (97)
T PF04673_consen 34 SFHDLYF--HLIEADDDPGEAIAKARGHPEFVRISER-LSPYIS 74 (97)
T ss_dssp EETTEEE--EEEEESS--HHHHHHTTS-GGGHHHHHH-HHTTEE
T ss_pred eeCCEEE--EEEeccCCchHHHHHHhcCcHHHHHHHH-HHhhCC
Confidence 4889999 5555677888889999999999886555 577773
No 386
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=21.30 E-value=4.3e+02 Score=25.49 Aligned_cols=47 Identities=15% Similarity=0.298 Sum_probs=31.8
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEE
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~V 229 (439)
..+++...+|..|.+++..++..|.+++++.... .+.+.++.+|++.
T Consensus 164 ~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~------~~~~~~~~~~~~~ 210 (332)
T cd08259 164 DTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSP------EKLKILKELGADY 210 (332)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCH------HHHHHHHHcCCcE
Confidence 3456666678999999999999999876665331 1233356667643
No 387
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=21.20 E-value=7.8e+02 Score=24.05 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=24.7
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEec
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP 208 (439)
+.++|+.++|--|.++|......|.+++++-.
T Consensus 7 k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r 38 (322)
T PRK07453 7 GTVIITGASSGVGLYAAKALAKRGWHVIMACR 38 (322)
T ss_pred CEEEEEcCCChHHHHHHHHHHHCCCEEEEEEC
Confidence 45778877888888888888888988766653
No 388
>PRK05855 short chain dehydrogenase; Validated
Probab=21.18 E-value=8.6e+02 Score=25.63 Aligned_cols=71 Identities=17% Similarity=0.062 Sum_probs=41.9
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (439)
...+|+.++|--|.++|......|.+++++-... +....-...++..|.++..+...- +-.+.+..+++..
T Consensus 316 ~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv-~~~~~~~~~~~~~ 386 (582)
T PRK05855 316 KLVVVTGAGSGIGRETALAFAREGAEVVASDIDE--AAAERTAELIRAAGAVAHAYRVDV-SDADAMEAFAEWV 386 (582)
T ss_pred CEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCeEEEEEcCC-CCHHHHHHHHHHH
Confidence 4467777788899999988888999966654332 112222334566787666554321 2233444454443
No 389
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=21.17 E-value=3.8e+02 Score=25.83 Aligned_cols=46 Identities=20% Similarity=0.280 Sum_probs=30.5
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCE
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE 228 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~ 228 (439)
..+++...+|..|.+++..|+.+|++++++.+.. .+.+.++.+|++
T Consensus 144 ~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~------~~~~~~~~~g~~ 189 (324)
T cd08244 144 DVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGP------AKTALVRALGAD 189 (324)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCH------HHHHHHHHcCCC
Confidence 3455655578999999999999999865554331 123345667764
No 390
>PRK08339 short chain dehydrogenase; Provisional
Probab=21.11 E-value=6.3e+02 Score=23.91 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=25.9
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEec
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP 208 (439)
+..+|+.++|.-|.++|......|.+++++-.
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~V~~~~r 40 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGADVILLSR 40 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 45677888888999999999999998777643
No 391
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=21.07 E-value=5.3e+02 Score=22.02 Aligned_cols=97 Identities=15% Similarity=0.118 Sum_probs=47.7
Q ss_pred HHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcch
Q 013596 193 ATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPM 272 (439)
Q Consensus 193 A~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~ 272 (439)
+...+..+.+..|++-.... ...........+.+++.= ..+++.+.+..+++.. .+..+...++++- .|.
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~Q--~g~dLG~Rm~~a~~~~-~~g~~~vvliGsD---~P~-- 72 (122)
T PF09837_consen 3 AALAQADGADVVLAYTPDGD--HAAFRQLWLPSGFSFFPQ--QGGDLGERMANAFQQA-ARGYEPVVLIGSD---CPD-- 72 (122)
T ss_dssp -----TSSSEEEEEE----T--THHHHHHHH-TTSEEEE----SSSHHHHHHHHHHHH-HTT-SEEEEE-SS----TT--
T ss_pred cccccCCCcCEEEEEcCCcc--HHHHhccccCCCCEEeec--CCCCHHHHHHHHHHHH-HcCCCcEEEEcCC---CCC--
Confidence 44566678888887744221 111111133344455443 3468999999998876 4444455555432 221
Q ss_pred hhhhhhHHhHHHHHHHHHHHhCCCCCEEEEcCCchH
Q 013596 273 MVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGS 308 (439)
Q Consensus 273 ~v~~g~~~ig~E~~~Qi~e~~g~~~d~vvvpvG~GG 308 (439)
+-.+...|..+.+. ..|+|+.|+--||
T Consensus 73 --------l~~~~l~~A~~~L~-~~d~VlgPa~DGG 99 (122)
T PF09837_consen 73 --------LTPDDLEQAFEALQ-RHDVVLGPAEDGG 99 (122)
T ss_dssp ----------HHHHHHHHHHTT-T-SEEEEEBTTSS
T ss_pred --------CCHHHHHHHHHHhc-cCCEEEeeccCCC
Confidence 11344445555555 4699999998776
No 392
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=21.06 E-value=5e+02 Score=25.33 Aligned_cols=47 Identities=17% Similarity=0.110 Sum_probs=32.3
Q ss_pred eeEEecCcchHHHHHHHHHHH-cCCeEEEEecCCchhhHHHHHHHHHHcCCEEEE
Q 013596 178 RIIAETGAGQHGVATATVCAR-FGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~-~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
.+++.. +|--|.+++..++. +|.+++.+... ..+.+.++.+|++.+.
T Consensus 165 ~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~~~------~~~~~~~~~~g~~~v~ 212 (338)
T PRK09422 165 WIAIYG-AGGLGNLALQYAKNVFNAKVIAVDIN------DDKLALAKEVGADLTI 212 (338)
T ss_pred EEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC------hHHHHHHHHcCCcEEe
Confidence 455544 78888888888887 59986555443 2356667889986654
No 393
>PRK12747 short chain dehydrogenase; Provisional
Probab=21.02 E-value=6.7e+02 Score=23.24 Aligned_cols=56 Identities=16% Similarity=0.170 Sum_probs=35.7
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEc
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~ 233 (439)
+.++|+.++|--|.++|......|.+++++..... +........++..|.++..+.
T Consensus 5 k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 60 (252)
T PRK12747 5 KVALVTGASRGIGRAIAKRLANDGALVAIHYGNRK-EEAEETVYEIQSNGGSAFSIG 60 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCH-HHHHHHHHHHHhcCCceEEEe
Confidence 35678888888999999999999998777542211 112222334555676665554
No 394
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=21.01 E-value=5.1e+02 Score=23.95 Aligned_cols=62 Identities=21% Similarity=0.142 Sum_probs=42.5
Q ss_pred HHHhCCCeeEEecCcchHHH-HHHHHHHHcCCeEEEEecCCc-----hhhHHHHHHHHHHcCCEEEEE
Q 013596 171 AKRLGKTRIIAETGAGQHGV-ATATVCARFGLQCIVYMGAQD-----MERQALNVFRMRLLGAEVRAV 232 (439)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhG~-AlA~aa~~~Gi~~~IvmP~~~-----~~~~~~k~~~m~~~GA~Vv~v 232 (439)
+++.|.+.+|++.-..|.++ +.|.-|..+|++++|+-.... .+.....++.|+..|++|+..
T Consensus 137 L~~~gi~~lii~G~~T~~CV~~Ta~dA~~~gy~v~v~~Da~a~~~~~~~~~~~al~~~~~~~~~v~t~ 204 (212)
T PRK11609 137 LREHGITELIVMGLATDYCVKFTVLDALALGYQVNVITDGCRGVNLQPQDSAHAFMEMSAAGATLYTL 204 (212)
T ss_pred HHHcCCCEEEEEEeccCHHHHHHHHHHHHCCCEEEEEeeccCCCCCCchhHHHHHHHHHHCCCEEEEH
Confidence 34567777888777777665 455668889999998887532 222234577788889998753
No 395
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=21.00 E-value=3e+02 Score=30.46 Aligned_cols=53 Identities=23% Similarity=0.275 Sum_probs=38.1
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEecCCc---------------hhhHHHHHHHHHHcCCEEEEE
Q 013596 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQD---------------MERQALNVFRMRLLGAEVRAV 232 (439)
Q Consensus 180 Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~---------------~~~~~~k~~~m~~~GA~Vv~v 232 (439)
|+.-++|-.|.+.|+..++.|.+++||=.... .+......+.++.+|.+++.-
T Consensus 313 VaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~ 380 (639)
T PRK12809 313 VAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLN 380 (639)
T ss_pred EEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcC
Confidence 45568999999999999999999888743211 111223566788999998753
No 396
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=20.98 E-value=9.1e+02 Score=25.83 Aligned_cols=47 Identities=17% Similarity=0.106 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHhCCCeeEEecCcchHHHHHHHHHHHcCCeEEEEecC
Q 013596 161 INNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (439)
Q Consensus 161 ~Rga~~~~~~a~~~g~~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~ 209 (439)
+.-+...+..+...+.+.+|+-+.||+++..+|.. +-.++.+++.|.
T Consensus 359 ~~ia~~a~~~a~~~~akaIVv~T~SG~TA~~vSr~--rp~~PIiAvT~~ 405 (473)
T TIGR01064 359 EAIALSAVEAAEKLDAKAIVVLTESGRTARLLSKY--RPNAPIIAVTPN 405 (473)
T ss_pred HHHHHHHHHHHhhcCCCEEEEEcCChHHHHHHHhh--CCCCCEEEEcCC
Confidence 33444444555556666666666677776666543 455666666665
No 397
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=20.84 E-value=6.1e+02 Score=25.92 Aligned_cols=31 Identities=19% Similarity=0.112 Sum_probs=17.8
Q ss_pred CCeEEEEecCCchhhHHHHHHHHHHcCC-EEEEEc
Q 013596 200 GLQCIVYMGAQDMERQALNVFRMRLLGA-EVRAVH 233 (439)
Q Consensus 200 Gi~~~IvmP~~~~~~~~~k~~~m~~~GA-~Vv~v~ 233 (439)
-.+..|++..+...+. -+.++.+|. ++..+.
T Consensus 4 ~~p~~i~~G~g~l~~l---~~~l~~~g~~~~lvv~ 35 (377)
T cd08176 4 YLPPTNLFGAGAIKEI---GDELKNLGFKKALIVT 35 (377)
T ss_pred cCCCeEEECcCHHHHH---HHHHHHhCCCeEEEEC
Confidence 4566777776653321 234677785 566664
No 398
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=20.72 E-value=1.1e+02 Score=31.38 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=22.4
Q ss_pred ecCcchHHHHHHHHHHHcCCeEEEEecC
Q 013596 182 ETGAGQHGVATATVCARFGLQCIVYMGA 209 (439)
Q Consensus 182 ~aSsGNhG~AlA~aa~~~Gi~~~IvmP~ 209 (439)
.-++|..|.+.|..++..|.+++|+=..
T Consensus 4 VIG~G~AGl~AA~~Aae~G~~V~lvek~ 31 (417)
T PF00890_consen 4 VIGGGLAGLAAAIEAAEAGAKVLLVEKG 31 (417)
T ss_dssp EE-SSHHHHHHHHHHHHTTT-EEEEESS
T ss_pred EECCCHHHHHHHHHHhhhcCeEEEEEee
Confidence 3479999999999999999988887654
No 399
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=20.71 E-value=8.7e+02 Score=24.44 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=18.7
Q ss_pred CCCEEEEcCCchHHH--HHHHHHHhcCCCcEEEEEecC
Q 013596 296 KPDVLIACVGGGSNA--MGLFHEFVNDKDVRLIGVEAA 331 (439)
Q Consensus 296 ~~d~vvvpvG~GG~~--aGi~~~~~~~p~vrvigVep~ 331 (439)
.+| +|+++|||+.+ +....... .+.+|.|-+.
T Consensus 77 ~~d-~IIavGGGs~~D~aK~ia~~~---~~p~i~VPTt 110 (349)
T cd08550 77 EAD-VIIGVGGGKTLDTAKAVADRL---DKPIVIVPTI 110 (349)
T ss_pred CCC-EEEEecCcHHHHHHHHHHHHc---CCCEEEeCCc
Confidence 356 46779998887 33333222 3456666654
No 400
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=20.69 E-value=3e+02 Score=29.00 Aligned_cols=54 Identities=26% Similarity=0.359 Sum_probs=36.3
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCC------chhhHHHHHHHHHHcCCEEEE
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQ------DMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~------~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
+++++ -++|..|..+|...+++|.+++++-+.. +.+....-.+.++..|.+++.
T Consensus 181 ~~vvI-IGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~ 240 (472)
T PRK05976 181 KSLVI-VGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVT 240 (472)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEe
Confidence 34444 5789999999999999999999886432 211122223457778877653
No 401
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=20.67 E-value=1.1e+02 Score=31.27 Aligned_cols=33 Identities=18% Similarity=0.087 Sum_probs=24.3
Q ss_pred CEEEEcCCchHHHHHHHHHHhcCCCcEEEEEecCCC
Q 013596 298 DVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGF 333 (439)
Q Consensus 298 d~vvvpvG~GG~~aGi~~~~~~~p~vrvigVep~~s 333 (439)
|+|||..|..|+.+++.++- ...+|+.||....
T Consensus 1 DVvVIG~G~AGl~AA~~Aae---~G~~V~lvek~~~ 33 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAE---AGAKVLLVEKGPR 33 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHH---TTT-EEEEESSSG
T ss_pred CEEEECCCHHHHHHHHHHhh---hcCeEEEEEeecc
Confidence 78999999888888876653 3459999998774
No 402
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=20.58 E-value=5.2e+02 Score=23.95 Aligned_cols=66 Identities=17% Similarity=0.067 Sum_probs=41.8
Q ss_pred CcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 013596 184 GAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (439)
Q Consensus 184 SsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (439)
+++.-|.++|....+.|.++++.-...... ...-.+..+.+|.+++.++.. ..+.++.+++...+.
T Consensus 4 ~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~-~~~~~~l~~~~~~~~~~~D~~---~~~~v~~~~~~~~~~ 69 (241)
T PF13561_consen 4 SSSGIGRAIARALAEEGANVILTDRNEEKL-ADALEELAKEYGAEVIQCDLS---DEESVEALFDEAVER 69 (241)
T ss_dssp STSHHHHHHHHHHHHTTEEEEEEESSHHHH-HHHHHHHHHHTTSEEEESCTT---SHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHCCCEEEEEeCChHHH-HHHHHHHHHHcCCceEeecCc---chHHHHHHHHHHHhh
Confidence 456789999999999999988887653311 122234456789998776642 234455555544443
No 403
>PRK05884 short chain dehydrogenase; Provisional
Probab=20.54 E-value=6.7e+02 Score=23.06 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=33.6
Q ss_pred eEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHH-HHHHcCCEEEEEcC
Q 013596 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVF-RMRLLGAEVRAVHS 234 (439)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~-~m~~~GA~Vv~v~~ 234 (439)
++++.++|.-|.++|....+.|.+++++-.... +.+ ..+.++.+++.++.
T Consensus 3 vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~------~~~~~~~~~~~~~~~~D~ 53 (223)
T PRK05884 3 VLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRD------DLEVAAKELDVDAIVCDN 53 (223)
T ss_pred EEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHH------HHHHHHHhccCcEEecCC
Confidence 677888889999999999889998887754311 111 12334666666554
No 404
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=20.50 E-value=8.7e+02 Score=24.34 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=19.8
Q ss_pred CCCEEEEcCCchHHH--HHHHHHHhcCCCcEEEEEecCCC
Q 013596 296 KPDVLIACVGGGSNA--MGLFHEFVNDKDVRLIGVEAAGF 333 (439)
Q Consensus 296 ~~d~vvvpvG~GG~~--aGi~~~~~~~p~vrvigVep~~s 333 (439)
.+|. |+.+|||+.+ +....... .+.+|.|-+..+
T Consensus 77 ~~d~-IIaiGGGs~iD~aK~ia~~~---~~p~i~IPTtat 112 (337)
T cd08177 77 GADG-IVAIGGGSTIDLAKAIALRT---GLPIIAIPTTLS 112 (337)
T ss_pred CCCE-EEEeCCcHHHHHHHHHHHHh---cCCEEEEcCCch
Confidence 4666 5678888887 33333322 355777765543
No 405
>PRK10083 putative oxidoreductase; Provisional
Probab=20.49 E-value=3.8e+02 Score=26.28 Aligned_cols=48 Identities=15% Similarity=0.197 Sum_probs=32.0
Q ss_pred eEEecCcchHHHHHHHHHHH-cCCeEEEEecCCchhhHHHHHHHHHHcCCEEEE
Q 013596 179 IIAETGAGQHGVATATVCAR-FGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aa~~-~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~ 231 (439)
.|+..++|--|.+++..|+. +|.+.++..... ..|.+.++.+|++-+.
T Consensus 163 ~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~-----~~~~~~~~~~Ga~~~i 211 (339)
T PRK10083 163 VALIYGAGPVGLTIVQVLKGVYNVKAVIVADRI-----DERLALAKESGADWVI 211 (339)
T ss_pred EEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCC-----HHHHHHHHHhCCcEEe
Confidence 34345578888888888886 698876665432 3456667889986543
No 406
>PRK06753 hypothetical protein; Provisional
Probab=20.49 E-value=1.1e+02 Score=30.64 Aligned_cols=28 Identities=29% Similarity=0.378 Sum_probs=24.0
Q ss_pred EecCcchHHHHHHHHHHHcCCeEEEEec
Q 013596 181 AETGAGQHGVATATVCARFGLQCIVYMG 208 (439)
Q Consensus 181 v~aSsGNhG~AlA~aa~~~Gi~~~IvmP 208 (439)
+..++|-.|.++|.+.++.|++++|+=.
T Consensus 4 ~IvGgG~aGl~~A~~L~~~g~~v~v~E~ 31 (373)
T PRK06753 4 AIIGAGIGGLTAAALLQEQGHEVKVFEK 31 (373)
T ss_pred EEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 3457999999999999999999888753
No 407
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=20.40 E-value=9.9e+02 Score=24.95 Aligned_cols=54 Identities=20% Similarity=0.228 Sum_probs=37.1
Q ss_pred eeEEecCcchHHHHHHHHHHHc--CCeEEEEecCCchhhHHHHHHHHHHcCCEEEEEcC
Q 013596 178 RIIAETGAGQHGVATATVCARF--GLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~--Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~Vv~v~~ 234 (439)
++.+-.|+|+-|.+..-+.+++ .++++.+.-....+ .-.++.+.++.+.+.+..
T Consensus 3 ~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~---~l~~q~~~f~p~~v~i~~ 58 (385)
T PRK05447 3 RITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVE---LLAEQAREFRPKYVVVAD 58 (385)
T ss_pred eEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHH---HHHHHHHHhCCCEEEEcC
Confidence 4566678999999887776664 56777776443332 234468889999888753
No 408
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=20.30 E-value=8.8e+02 Score=24.28 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhCCCCCEEEEcCCchHHHHHHHHHHh--cCCCcEEEEEecCCCCCCchhhhhhhhcCCe
Q 013596 282 GKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV--NDKDVRLIGVEAAGFGLDSGKHAATLSKGEV 349 (439)
Q Consensus 282 g~E~~~Qi~e~~g~~~d~vvvpvG~GG~~aGi~~~~~--~~p~vrvigVep~~s~~~~~~~~~sl~~G~~ 349 (439)
++...+++++..+ ++|.|+++ +...+.|+..+++ ...++.|+|.... +.+.+.++.|..
T Consensus 196 a~~~~~~lL~~~p-di~aI~~~--~~~~~~Ga~~Al~~~g~~~v~VvG~D~~------~~~~~~i~~G~i 256 (336)
T PRK15408 196 SLQTAEGILKAYP-DLDAIIAP--DANALPAAAQAAENLKRDKVAIVGFSTP------NVMRPYVKRGTV 256 (336)
T ss_pred HHHHHHHHHHHCC-CCcEEEEC--CCccHHHHHHHHHhCCCCCEEEEEeCCc------HHHHHHHhcCCc
Confidence 4556666666654 68999977 3344457777776 2237889998733 345667888754
No 409
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=20.29 E-value=2.7e+02 Score=29.21 Aligned_cols=52 Identities=17% Similarity=0.228 Sum_probs=35.9
Q ss_pred EEecCcchHHHHHHHHHHHcCC-eEEEEecCCc--hhhHHHHHHHHHHcCCEEEE
Q 013596 180 IAETGAGQHGVATATVCARFGL-QCIVYMGAQD--MERQALNVFRMRLLGAEVRA 231 (439)
Q Consensus 180 Vv~aSsGNhG~AlA~aa~~~Gi-~~~IvmP~~~--~~~~~~k~~~m~~~GA~Vv~ 231 (439)
|+.-++|+.|.-+|....++|. +++++..... ........+.++..|.+++.
T Consensus 276 VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~ 330 (457)
T PRK11749 276 VVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEW 330 (457)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEe
Confidence 4446789999999999999998 7888865321 11112234567788888775
No 410
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=20.26 E-value=1.2e+02 Score=30.96 Aligned_cols=28 Identities=39% Similarity=0.399 Sum_probs=24.5
Q ss_pred EecCcchHHHHHHHHHHHcCCeEEEEec
Q 013596 181 AETGAGQHGVATATVCARFGLQCIVYMG 208 (439)
Q Consensus 181 v~aSsGNhG~AlA~aa~~~Gi~~~IvmP 208 (439)
+..++|-.|.++|.+.++.|++++|+=.
T Consensus 7 ~IvGgG~aGl~~A~~L~~~G~~v~l~E~ 34 (384)
T PRK08849 7 AVVGGGMVGAATALGFAKQGRSVAVIEG 34 (384)
T ss_pred EEECcCHHHHHHHHHHHhCCCcEEEEcC
Confidence 3468999999999999999999999873
No 411
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=20.25 E-value=3.3e+02 Score=26.84 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=30.1
Q ss_pred CeeEEecCcchHHHHHHHHHHHcC-CeEEEEecCCchhhHHHHHHHHHHcCCE
Q 013596 177 TRIIAETGAGQHGVATATVCARFG-LQCIVYMGAQDMERQALNVFRMRLLGAE 228 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~G-i~~~IvmP~~~~~~~~~k~~~m~~~GA~ 228 (439)
..+++. ++|..|.+++..++.+| .++++ +... ..|...++.+|++
T Consensus 168 ~~vlI~-g~g~~g~~~~~~a~~~G~~~v~~-~~~~-----~~~~~~~~~~g~~ 213 (345)
T cd08286 168 DTVAIV-GAGPVGLAALLTAQLYSPSKIIM-VDLD-----DNRLEVAKKLGAT 213 (345)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCCeEEE-EcCC-----HHHHHHHHHhCCC
Confidence 345564 57999999999999999 55444 4332 2345567778874
No 412
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=20.22 E-value=5.8e+02 Score=26.35 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=35.7
Q ss_pred CeeEEecCcchHHHHHHHHHHHcCCeEEEEecCCc-------hhhHHHHHHHHHHcCCEEE
Q 013596 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQD-------MERQALNVFRMRLLGAEVR 230 (439)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~-------~~~~~~k~~~m~~~GA~Vv 230 (439)
+++++ .++|..|.-+|...+++|.+++++..... .+....-.+.++..|.+|+
T Consensus 150 ~~vvV-vGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~ 209 (444)
T PRK09564 150 KNIVI-IGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELH 209 (444)
T ss_pred CEEEE-ECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEE
Confidence 44444 57899999999999999999999865421 1111222345677787765
No 413
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=20.20 E-value=4.1e+02 Score=25.72 Aligned_cols=45 Identities=16% Similarity=0.294 Sum_probs=29.7
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHH-cCCE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRL-LGAE 228 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~-~GA~ 228 (439)
.+++...+|-.|.+++..++.+|.+++++.... .+.+.++. +|++
T Consensus 148 ~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~------~~~~~~~~~~g~~ 193 (329)
T cd05288 148 TVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSD------EKCRWLVEELGFD 193 (329)
T ss_pred EEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH------HHHHHHHhhcCCc
Confidence 455555578899999999999999765554331 23334555 7764
No 414
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=20.10 E-value=1.6e+02 Score=26.93 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=20.9
Q ss_pred eEEecCcchHHHHHHHHHHHcCCeEEEEe
Q 013596 179 IIAETGAGQHGVATATVCARFGLQCIVYM 207 (439)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aa~~~Gi~~~Ivm 207 (439)
.++..+-|.-|.++|..++.+|.+++|+=
T Consensus 25 ~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e 53 (162)
T PF00670_consen 25 RVVVIGYGKVGKGIARALRGLGARVTVTE 53 (162)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEE-
T ss_pred EEEEeCCCcccHHHHHHHhhCCCEEEEEE
Confidence 34557899999999999999998877653
No 415
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=20.02 E-value=1.3e+02 Score=28.61 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=23.7
Q ss_pred ecCcchHHHHHHHHHHHcCCeEEEEecC
Q 013596 182 ETGAGQHGVATATVCARFGLQCIVYMGA 209 (439)
Q Consensus 182 ~aSsGNhG~AlA~aa~~~Gi~~~IvmP~ 209 (439)
.-++|-.|.++|...++.|++++|+=..
T Consensus 5 IiGaG~aGl~~A~~l~~~g~~v~vie~~ 32 (295)
T TIGR02032 5 VVGAGPAGASAAYRLADKGLRVLLLEKK 32 (295)
T ss_pred EECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 3578999999999999999998877543
No 416
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=20.01 E-value=4e+02 Score=25.89 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=29.8
Q ss_pred eeEEecCcchHHHHHHHHHHHcCCeEEEEecCCchhhHHHHHHHHHHcCCE
Q 013596 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE 228 (439)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aa~~~Gi~~~IvmP~~~~~~~~~k~~~m~~~GA~ 228 (439)
.+++. ++|..|.+++..|+.+|++.+++.... ..+.+.++.+|+.
T Consensus 162 ~vlI~-g~g~vg~~~~~la~~~G~~~v~~~~~~-----~~~~~~~~~~g~~ 206 (334)
T cd08234 162 SVLVF-GAGPIGLLLAQLLKLNGASRVTVAEPN-----EEKLELAKKLGAT 206 (334)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCcEEEEECCC-----HHHHHHHHHhCCe
Confidence 44454 578899999999999998844444332 2244456777875
Done!