RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 013596
(439 letters)
>gnl|CDD|215333 PLN02618, PLN02618, tryptophan synthase, beta chain.
Length = 410
Score = 739 bits (1910), Expect = 0.0
Identities = 314/366 (85%), Positives = 338/366 (92%), Gaps = 8/366 (2%)
Query: 61 ESDPAPWQRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYV 120
SDP +QRPD FGRFG+FGGK+VPETLM ALSELE+A + LA D +FQEEL+GIL+DYV
Sbjct: 4 GSDPTGFQRPDSFGRFGKFGGKYVPETLMTALSELEAAFNALATDPEFQEELAGILKDYV 63
Query: 121 GRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRII 180
GRETPLYFAERLTEHY+R +G GP IYLKREDLNHTGAHKINNAV QALLAKRLGK RII
Sbjct: 64 GRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRII 123
Query: 181 AETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLK 240
AETGAGQHGVATATVCARFGL+CIVYMGAQDMERQALNVFRMRLLGAEVR VHSGTATLK
Sbjct: 124 AETGAGQHGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLK 183
Query: 241 DATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVL 300
DATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFH+VIGKETRRQA+EKWGGKPDVL
Sbjct: 184 DATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHSVIGKETRRQAMEKWGGKPDVL 243
Query: 301 IACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLL 360
+ACVGGGSNAMGLFHEF++D+DVRLIGVEAAGFGLDSGKHAATL+KGEVGVLHGA+SYLL
Sbjct: 244 VACVGGGSNAMGLFHEFIDDEDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLL 303
Query: 361 QNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLL 420
Q+EDGQIIEPHSISAGLDYPGVGPEHSFLKD GRAEYY+VTD+EALE F+ L
Sbjct: 304 QDEDGQIIEPHSISAGLDYPGVGPEHSFLKDTGRAEYYSVTDEEALEA--------FQRL 355
Query: 421 SRHGGL 426
SR G+
Sbjct: 356 SRLEGI 361
>gnl|CDD|235288 PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.
Length = 397
Score = 734 bits (1898), Expect = 0.0
Identities = 250/358 (69%), Positives = 291/358 (81%), Gaps = 13/358 (3%)
Query: 68 QRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLY 127
PD G FG FGG+FVPETLM AL ELE A K +D +FQ EL +L++YVGR TPLY
Sbjct: 3 TLPDENGYFGEFGGRFVPETLMPALEELEEAYEKAKNDPEFQAELDYLLKNYVGRPTPLY 62
Query: 128 FAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQ 187
FAERL+EH GG IYLKREDLNHTGAHKINN +GQALLAKR+GK RIIAETGAGQ
Sbjct: 63 FAERLSEHL-----GGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGKKRIIAETGAGQ 117
Query: 188 HGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAI 247
HGVATAT A GL+C++YMGA+D+ERQALNVFRM+LLGAEV V SG+ TLKDA +EA+
Sbjct: 118 HGVATATAAALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEAL 177
Query: 248 RDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGG 307
RDWVTNVE THY++GSVAGPHPYP MVRDF +VIG+E + Q LEK G PD ++ACVGGG
Sbjct: 178 RDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGG 237
Query: 308 SNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQI 367
SNA+G+FH F++D+ VRLIGVEAAG GL++GKHAATL+KG GVLHGA +YLLQ+EDGQI
Sbjct: 238 SNAIGIFHPFIDDESVRLIGVEAAGKGLETGKHAATLTKGRPGVLHGAKTYLLQDEDGQI 297
Query: 368 IEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGG 425
+E HSISAGLDYPGVGPEH++LKD GRAEY ++TDDEALE F+LLSR G
Sbjct: 298 LETHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDDEALEA--------FQLLSRLEG 347
>gnl|CDD|223211 COG0133, TrpB, Tryptophan synthase beta chain [Amino acid transport
and metabolism].
Length = 396
Score = 685 bits (1769), Expect = 0.0
Identities = 247/356 (69%), Positives = 289/356 (81%), Gaps = 14/356 (3%)
Query: 70 PDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFA 129
PD G FG FGG++VPETLM AL ELE A K +D +FQ EL +L+DY GR TPLYFA
Sbjct: 3 PDEKGYFGEFGGQYVPETLMPALEELEKAYEKAKNDPEFQAELDYLLKDYAGRPTPLYFA 62
Query: 130 ERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHG 189
ERLTEH G IYLKREDLNHTGAHKINNA+GQALLAKR+GKTRIIAETGAGQHG
Sbjct: 63 ERLTEHL------GAKIYLKREDLNHTGAHKINNALGQALLAKRMGKTRIIAETGAGQHG 116
Query: 190 VATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249
VATAT A FGL+C++YMGA+D+ERQALNVFRMRLLGAEV V SG+ TLKDA +EA+RD
Sbjct: 117 VATATAAALFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRD 176
Query: 250 WVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSN 309
WVTNVE THY++GS AGPHPYP +VRDF +VIG+E + Q LEK G PD ++ACVGGGSN
Sbjct: 177 WVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSN 236
Query: 310 AMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIE 369
A+G+FH F++D+ VRLIGVEAAG G+++GKHAATL+ G GVLHG +YLLQ+EDGQI+E
Sbjct: 237 AIGIFHPFIDDESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMKTYLLQDEDGQILE 296
Query: 370 PHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGG 425
HSISAGLDYPGVGPEH++LKD GRAEY ++TD+EALE F+LLSR G
Sbjct: 297 SHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDEEALEA--------FQLLSRLEG 344
>gnl|CDD|107207 cd06446, Trp-synth_B, Tryptophan synthase-beta: Trptophan synthase
is a bifunctional enzyme that catalyses the last two
steps in the biosynthesis of L-tryptophan via its alpha
and beta reactions. In the alpha reaction, indole
3-glycerol phosphate is cleaved reversibly to
glyceraldehyde 3-phosphate and indole at the active site
of the alpha subunit. In the beta reaction, indole
undergoes a PLP-dependent reaction with L-serine to form
L-tryptophan at the active site of the beta subunit.
Members of this CD, Trp-synth_B, are found in all three
major phylogenetic divisions.
Length = 365
Score = 594 bits (1534), Expect = 0.0
Identities = 232/335 (69%), Positives = 261/335 (77%), Gaps = 13/335 (3%)
Query: 91 ALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKR 150
AL ELE K D DF EEL + +DYVGR TPLY A+RL+E+ GG IYLKR
Sbjct: 2 ALEELEQEFSKERYDPDFPEELRELYKDYVGRPTPLYRAKRLSEYL-----GGAKIYLKR 56
Query: 151 EDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQ 210
EDLNHTGAHKINNA+GQALLAKR+GK R+IAETGAGQHGVATAT CA FGL+C +YMGA
Sbjct: 57 EDLNHTGAHKINNALGQALLAKRMGKKRVIAETGAGQHGVATATACALFGLECEIYMGAV 116
Query: 211 DMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPY 270
D+ERQ LNVFRM LLGAEV V SG+ TLKDA SEAIRDWVTNVE THY+LGSV GPHPY
Sbjct: 117 DVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPY 176
Query: 271 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEA 330
P MVRDF +VIG+E ++Q LEK G PDV+IACVGGGSNA GLF+ F+NDKDV+LIGVEA
Sbjct: 177 PNMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFINDKDVKLIGVEA 236
Query: 331 AGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLK 390
G GL++G HAA L G GVLHG Y LQ+EDGQI+ PHSISAGLDYPGVGPEH++LK
Sbjct: 237 GGCGLETGGHAAYLFGGTAGVLHGLKMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLK 296
Query: 391 DEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGG 425
D GR EY VTD+EALE FKLL+R G
Sbjct: 297 DSGRVEYVAVTDEEALEA--------FKLLARTEG 323
>gnl|CDD|183851 PRK13028, PRK13028, tryptophan synthase subunit beta; Provisional.
Length = 402
Score = 590 bits (1524), Expect = 0.0
Identities = 216/356 (60%), Positives = 260/356 (73%), Gaps = 13/356 (3%)
Query: 70 PDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFA 129
PD G FG +GG+FVP L AL ELE+A ++ D DF EL +L+ YVGR TPLY A
Sbjct: 9 PDADGFFGEYGGQFVPPELKPALDELEAAYEEIKKDPDFIAELRYLLKHYVGRPTPLYHA 68
Query: 130 ERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHG 189
+RL+E GG IYLKREDLNHTGAHKINN +GQALLAKR+GK R+IAETGAGQHG
Sbjct: 69 KRLSEEL-----GGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGKKRLIAETGAGQHG 123
Query: 190 VATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249
VATAT A FGL+C +YMG D+ERQ NVFRM+LLGAEV V G TLK+A A D
Sbjct: 124 VATATAAALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFED 183
Query: 250 WVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSN 309
++ + + THY +GSV GPHP+PMMVRDF +VIG+E R Q LE G PD ++ACVGGGSN
Sbjct: 184 YLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAREQFLEMTGRLPDAVVACVGGGSN 243
Query: 310 AMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIE 369
A+GLF F++D+ VRL+GVE AG GLD G+HAATL+ G+ GV+HG SY+LQ+EDG+
Sbjct: 244 AIGLFSAFLDDESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIHGFKSYVLQDEDGEPAP 303
Query: 370 PHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGG 425
HSI+AGLDYPGVGPEH++LKD GR EY TD+EAL+ F LLSR G
Sbjct: 304 VHSIAAGLDYPGVGPEHAYLKDIGRVEYVTATDEEALDA--------FFLLSRTEG 351
>gnl|CDD|232897 TIGR00263, trpB, tryptophan synthase, beta subunit. Tryptophan
synthase catalyzes the last step in the biosynthesis of
tryptophan. the beta chain contains the functional
domain for or the synthesis of tryptophan from indole
and serine. The enzyme requires pyridoxal-phosphate as a
cofactor. The pyridoxal-P attachment site is contained
within the conserved region
[LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P
attachment site] which is present between residues
90-100 of the model [Amino acid biosynthesis, Aromatic
amino acid family].
Length = 385
Score = 573 bits (1480), Expect = 0.0
Identities = 229/353 (64%), Positives = 271/353 (76%), Gaps = 13/353 (3%)
Query: 74 GRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLT 133
G FG FGG++VPETLM AL ELE+A D F EL+ +LR+Y GR TPL FA LT
Sbjct: 1 GYFGDFGGQYVPETLMPALEELEAAFEDAKADPAFWAELNELLRNYAGRPTPLTFAPNLT 60
Query: 134 EHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATA 193
E GG IYLKREDLNHTGAHKINNA+GQALLAKR+GK RIIAETGAGQHGVATA
Sbjct: 61 EAL-----GGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKKRIIAETGAGQHGVATA 115
Query: 194 TVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253
T A GL C VYMGA+D+ERQ NVFRM LLGA+V V SG+ TLKDA +EA+RDWVT+
Sbjct: 116 TAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTS 175
Query: 254 VETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGL 313
V+ THY+LGS GPHP+P MVRDF +VIG+E + Q LE+ G PD +IACVGGGSNA+G+
Sbjct: 176 VDDTHYVLGSAVGPHPFPTMVRDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGI 235
Query: 314 FHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSI 373
F+ F++D V+LIGVEA G G+D+ KHAATL+KG GVLHG +YLLQ+EDGQI+E HS+
Sbjct: 236 FYAFIDDPSVQLIGVEAGGLGIDTDKHAATLAKGSPGVLHGMKTYLLQDEDGQILEAHSV 295
Query: 374 SAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYLILPFKLLSRHGGL 426
SAGLDYPGVGPEH++L + GRA Y +TDDEALE FKLLSR+ G+
Sbjct: 296 SAGLDYPGVGPEHAYLHETGRATYEAITDDEALEA--------FKLLSRNEGI 340
>gnl|CDD|237513 PRK13803, PRK13803, bifunctional phosphoribosylanthranilate
isomerase/tryptophan synthase subunit beta; Provisional.
Length = 610
Score = 556 bits (1435), Expect = 0.0
Identities = 209/342 (61%), Positives = 266/342 (77%), Gaps = 6/342 (1%)
Query: 70 PDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFA 129
D GR+G FGG +VPETLM L EL+ + K+ +FQ+ +L++Y GR TPL A
Sbjct: 218 SDPAGRYGTFGGAYVPETLMANLQELQESYTKIIKSNEFQKTFKRLLQNYAGRPTPLTEA 277
Query: 130 ERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHG 189
+RL++ Y G IYLKREDLNHTG+HKINNA+GQALLAKR+GKTRIIAETGAGQHG
Sbjct: 278 KRLSDIY------GARIYLKREDLNHTGSHKINNALGQALLAKRMGKTRIIAETGAGQHG 331
Query: 190 VATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249
VATAT CA FGL+C ++MG +D++RQALNV RM+LLGA V V SG+ TLKDA +EAIRD
Sbjct: 332 VATATACALFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRD 391
Query: 250 WVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSN 309
WV +V THY++GS GPHPYP MV F +VIG+E + Q E+ G PD +IACVGGGSN
Sbjct: 392 WVASVPDTHYLIGSAVGPHPYPEMVAYFQSVIGEEAKEQLKEQTGKLPDAIIACVGGGSN 451
Query: 310 AMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIE 369
A+G+F+ F++D V+LIGVEA G G+++G+HAAT+ KG GVLHG+++YL+Q+E+GQI+E
Sbjct: 452 AIGIFYHFLDDPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHGSMTYLMQDENGQILE 511
Query: 370 PHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKL 411
PHSISAGLDYPG+GP H+ L + GRA Y +VTD+EAL+ KL
Sbjct: 512 PHSISAGLDYPGIGPMHANLFETGRAIYTSVTDEEALDAFKL 553
>gnl|CDD|184335 PRK13802, PRK13802, bifunctional indole-3-glycerol phosphate
synthase/tryptophan synthase subunit beta; Provisional.
Length = 695
Score = 407 bits (1046), Expect = e-136
Identities = 195/339 (57%), Positives = 248/339 (73%), Gaps = 5/339 (1%)
Query: 76 FGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEH 135
+G+FGG++VPE L+ AL ELE + D +F +EL+ + + YVGR +PL A R E
Sbjct: 279 WGQFGGRYVPEALITALDELERVYTQAKADPEFHKELATLNQRYVGRPSPLTEAPRFAER 338
Query: 136 YRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATV 195
+ G ++LKREDLNHTGAHKINNA+GQALL KR+GKTR+IAETGAGQHGVATATV
Sbjct: 339 VKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGKTRVIAETGAGQHGVATATV 398
Query: 196 CARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVE 255
CA GL+C +YMG D RQALNV RMR+LGAEV V G LKDA +EA+RDWVTNV+
Sbjct: 399 CAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVK 458
Query: 256 TTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGG--KPDVLIACVGGGSNAMGL 313
THY+LG+VAGPHP+P MVRDF +IG+E ++Q L+ W G PD + ACVGGGSNA+G+
Sbjct: 459 DTHYLLGTVAGPHPFPAMVRDFQKIIGEEAKQQ-LQDWYGIDHPDAICACVGGGSNAIGV 517
Query: 314 FHEFVNDKDVRLIGVEAAGFGLDSGKHAATLS--KGEVGVLHGALSYLLQNEDGQIIEPH 371
+ F++D+ V L G EA G G +SGKHA + GE+G+ GA SYLL+N++GQ ++ +
Sbjct: 518 MNAFLDDERVNLYGYEAGGNGPESGKHAIRFAPGTGELGMFQGAKSYLLENDEGQTLDTY 577
Query: 372 SISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMK 410
SISAGLDY VGPEH++LKD GR Y TD+EA+ K
Sbjct: 578 SISAGLDYASVGPEHAWLKDIGRVNYSWATDEEAMNAFK 616
>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily
(fold type II); this family of pyridoxal phosphate
(PLP)-dependent enzymes catalyzes beta-replacement and
beta-elimination reactions. This CD corresponds to
aminocyclopropane-1-carboxylate deaminase (ACCD),
tryptophan synthase beta chain (Trp-synth_B),
cystathionine beta-synthase (CBS), O-acetylserine
sulfhydrylase (CS), serine dehydratase (Ser-dehyd),
threonine dehydratase (Thr-dehyd), diaminopropionate
ammonia lyase (DAL), and threonine synthase (Thr-synth).
ACCD catalyzes the conversion of
1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate
and ammonia. Tryptophan synthase folds into a tetramer,
where the beta chain is the catalytic PLP-binding
subunit and catalyzes the formation of L-tryptophan from
indole and L-serine. CBS is a tetrameric hemeprotein
that catalyzes condensation of serine and homocysteine
to cystathionine. CS is a homodimer that catalyzes the
formation of L-cysteine from O-acetyl-L-serine.
Ser-dehyd catalyzes the conversion of L- or D-serine to
pyruvate and ammonia. Thr-dehyd is active as a homodimer
and catalyzes the conversion of L-threonine to
2-oxobutanoate and ammonia. DAL is also a homodimer and
catalyzes the alpha, beta-elimination reaction of both
L- and D-alpha, beta-diaminopropionate to form pyruvate
and ammonia. Thr-synth catalyzes the formation of
threonine and inorganic phosphate from
O-phosphohomoserine.
Length = 244
Score = 180 bits (460), Expect = 3e-54
Identities = 80/253 (31%), Positives = 107/253 (42%), Gaps = 40/253 (15%)
Query: 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLG---KTRII 180
TPL +RL++ GG +IYLK E LN TG+ K A+ LLA+ G K II
Sbjct: 1 TPLVRLKRLSK------LGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKLPKGVII 54
Query: 181 AETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLK 240
TG G G+A A AR GL+C + M V +MR LGAEV V
Sbjct: 55 ESTG-GNTGIALAAAAARLGLKCTIVMPEGA---SPEKVAQMRALGAEVVLVPGD---FD 107
Query: 241 DATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVL 300
DA + A + +Y+ +P IG E Q + KPD +
Sbjct: 108 DAIALAKELAEED-PGAYYVNQFD---NPA---NIAGQGTIGLEILEQLGGQ---KPDAV 157
Query: 301 IACVGGGSNAMGLFHEFVNDK-DVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYL 359
+ VGGG N G+ +V++IGVE T+S E L L
Sbjct: 158 VVPVGGGGNIAGIARALKELLPNVKVIGVEP---------EVVTVSDEE--ALEAIR--L 204
Query: 360 LQNEDGQIIEPHS 372
L E+G ++EP S
Sbjct: 205 LAREEGILVEPSS 217
>gnl|CDD|237087 PRK12391, PRK12391, tryptophan synthase subunit beta; Reviewed.
Length = 427
Score = 168 bits (427), Expect = 2e-47
Identities = 123/344 (35%), Positives = 150/344 (43%), Gaps = 67/344 (19%)
Query: 110 EELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQAL 169
EE+ I R + R TPL A RL + P IY K E ++ TG+HK N AV QA
Sbjct: 66 EEVREIYR--LWRPTPLIRARRLEKALGTP----AKIYYKYEGVSPTGSHKPNTAVAQAY 119
Query: 170 LAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDME----RQALNVFRMRLL 225
K+ G R+ ETGAGQ G A A CA FGL+C V+M E R++L M
Sbjct: 120 YNKKEGIKRLTTETGAGQWGSALALACALFGLECTVFMVRVSYEQKPYRRSL----METY 175
Query: 226 GAEVRA-----VHSGTATLKD----------ATSEAIRDWVTNVETTHYILGSVAGPHPY 270
GAEV +G L + A SEA+ D T Y LGSV +
Sbjct: 176 GAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKR-PDTKYALGSVL---NH 231
Query: 271 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDK-----DVRL 325
++ VIG E ++Q LE G PDV+I CVGGGSN GL F+ DK D R
Sbjct: 232 VLL---HQTVIGLEAKKQ-LELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRF 287
Query: 326 IGVEAAGFGLDSGKHAATLSKGE--------VGVLHGALSYLLQNEDGQIIEPHSISA-G 376
I VE A TL+KGE G+ Y L G P I A G
Sbjct: 288 IAVEPAA--------CPTLTKGEYAYDFGDTAGLTPLLKMYTL----GHDFVPPPIHAGG 335
Query: 377 LDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLYL----ILP 416
L Y G+ P S L EG E E E L+ I+P
Sbjct: 336 LRYHGMAPLVSLLVHEGLIEARAYPQTEVFEAAVLFARTEGIVP 379
>gnl|CDD|224269 COG1350, COG1350, Predicted alternative tryptophan synthase
beta-subunit (paralog of TrpB) [General function
prediction only].
Length = 432
Score = 159 bits (404), Expect = 3e-44
Identities = 118/322 (36%), Positives = 144/322 (44%), Gaps = 53/322 (16%)
Query: 120 VGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRI 179
+GR TPL A+ L E G IY K E + TG+HKIN A+ QA AK+ G R+
Sbjct: 75 IGRPTPLIRAKNLEEAL----GTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGAKRL 130
Query: 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS----- 234
ETGAGQ G A + A FGL+ V+M ++ + M L GAEV S
Sbjct: 131 TTETGAGQWGSALSLAAALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEF 190
Query: 235 GTATLKD----------ATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKE 284
G LK+ A SEAI + N E T Y LGSV V VIG E
Sbjct: 191 GRKILKEDPDHPGSLGIAISEAIEYALKN-ENTKYSLGSVLN------HVLLHQTVIGLE 243
Query: 285 TRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDK-----DVRLIGVEAAGFGLDSGK 339
++Q LE+ G PDV+I CVGGGSN GL + F+ DK + R I VE K
Sbjct: 244 AKKQ-LEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEP--------K 294
Query: 340 HAATLSKGE--------VGVLHGALSYLLQNEDGQIIEPHSISA-GLDYPGVGPEHSFLK 390
L+KGE G+ Y L G P I A GL Y GV P S L
Sbjct: 295 ACPKLTKGEYRYDFGDTAGLTPLLKMYTL----GHDYVPPPIHAGGLRYHGVAPTLSLLV 350
Query: 391 DEGRAEYYNVTDDEALEGMKLY 412
EG E +E E L+
Sbjct: 351 KEGIVEARAYDQEEVFEAAVLF 372
>gnl|CDD|233403 TIGR01415, trpB_rel, pyridoxal-phosphate dependent TrpB-like
enzyme. This model represents a family of
pyridoxal-phosphate dependent enzyme (pfam00291) closely
related to the beta subunit of tryptophan synthase
(TIGR00263). However, the only case in which a member of
this family replaces a member of TIGR00263 is in
Sulfolobus species which contain two sequences which hit
this model, one of which is proximal to the alpha
subunit. In every other case so far, either the species
appears not to make tryptophan (there is no trp synthase
alpha subunit), or a trp synthase beta subunit matching
TIGR00263 is also found [Unknown function, Enzymes of
unknown specificity].
Length = 419
Score = 157 bits (399), Expect = 1e-43
Identities = 115/321 (35%), Positives = 148/321 (46%), Gaps = 51/321 (15%)
Query: 120 VGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRI 179
+GR TPL A+ L E G IY K E ++ TG+HKIN A+ QA AK G R+
Sbjct: 65 IGRPTPLIRAKGLEELL----GTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGAKRL 120
Query: 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS----- 234
+ ETGAGQ G A + A FGL+C V+M ++ + M L GAEV S
Sbjct: 121 VTETGAGQWGSALSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSEFTEF 180
Query: 235 GTATLKD----------ATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKE 284
G LK+ A SEAI +++ E T Y LGSV V VIG E
Sbjct: 181 GREVLKEDPDHPGSLGIAISEAIEYALSD-EDTKYSLGSVLN------HVLLHQTVIGLE 233
Query: 285 TRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDK-----DVRLIGVEAAGFGLDSGK 339
++Q +E+ G PDV+I CVGGGSN GL FV DK D R I E K
Sbjct: 234 AKKQ-MEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEP--------K 284
Query: 340 HAATLSKGE--------VGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKD 391
TL++GE G+ Y L ++ I P + GL Y GV P S L +
Sbjct: 285 ACPTLTRGEYRYDFGDTAGLTPLLKMYTLGHD---FIPPPIHAGGLRYHGVAPTLSLLVN 341
Query: 392 EGRAEYYNVTDDEALEGMKLY 412
G E +EA E ++
Sbjct: 342 LGIVEARAYDQEEAFEAAVIF 362
>gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme. Members of
this family are all pyridoxal-phosphate dependent
enzymes. This family includes: serine dehydratase
EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16,
tryptophan synthase beta chain EC:4.2.1.20, threonine
synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8
P11096, cystathionine beta-synthase EC:4.2.1.22,
1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4.
Length = 295
Score = 126 bits (318), Expect = 3e-33
Identities = 80/299 (26%), Positives = 110/299 (36%), Gaps = 47/299 (15%)
Query: 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLG 175
+ +G TPL G +YLK E LN TG+ K A L A G
Sbjct: 1 ISLGIGP-TPLVRLPSP--------LLGARVYLKLESLNPTGSFKDRGAAYLLLRALERG 51
Query: 176 KTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235
T + E +G G A A AR GL+ + + + MR LGAEV V S
Sbjct: 52 AT--VVEASSGNTGRALAAAAARLGLKVTIVVPE-GASPG--KLLLMRALGAEVILVVSE 106
Query: 236 TATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGG 295
+A+ E G + V + IG E Q + G
Sbjct: 107 -----GDYDDALELAEEAAELLAAYDGPIPLGQYNNPNVIAGYKTIGLEILEQLGQ---G 158
Query: 296 KPDVLIACVGGGSNAMGLFHEF-VNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHG 354
PD ++ VGGG A G+ +R+IGVE G A L++
Sbjct: 159 DPDAVVVPVGGGGLAAGIARGLKELGPGIRVIGVEPEG--------APALARSL------ 204
Query: 355 ALSYLLQNEDGQIIEPHSISAGL--DYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKL 411
E G+ + + AGL P G L DE + Y V+D+EALE ++L
Sbjct: 205 --------EAGRRVPKPTTIAGLGPGIPLDGELALELIDEYVGDVYAVSDEEALEAIRL 255
>gnl|CDD|107205 cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino
acid degradation is the removal of nitrogen. Although
the nitrogen atoms of most amino acids are transferred
to alpha-ketoglutarate before removal, the alpha-amino
group of threonine can be directly converted into NH4+.
The direct deamination is catalyzed by threonine
dehydratase, in which pyridoxal phosphate (PLP) is the
prosthetic group. Threonine dehydratase is widely
distributed in all three major phylogenetic divisions.
Length = 304
Score = 77.9 bits (193), Expect = 5e-16
Identities = 69/309 (22%), Positives = 108/309 (34%), Gaps = 64/309 (20%)
Query: 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRL 174
++ V R TPL + L+E G +YLK E+L TG+ KI A + L
Sbjct: 10 RIKPVV-RRTPLLTSPTLSELL------GAEVYLKCENLQKTGSFKIRGAYNKLLSLSEE 62
Query: 175 GKTR-IIAETGAGQHGVATATVCARFGLQCIVYM--GAQDMERQALNVFRMRLLGAEVRA 231
+ + ++A + AG H A G+ + M A + A R GAEV
Sbjct: 63 ERAKGVVAAS-AGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDA-----TRAYGAEV-- 114
Query: 232 VHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPY--PMMVRDFHAVIGKETRRQA 289
V G +A ++A E + HP+ P ++ IG E Q
Sbjct: 115 VLYG-EDFDEAEAKAREL----AEEEGLTF--I---HPFDDPDVIAG-QGTIGLEILEQV 163
Query: 290 LEKWGGKPDVLIACVGGGSNAMG--LFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKG 347
D + VGGG G + ++ + ++IGVE G A S
Sbjct: 164 -----PDLDAVFVPVGGGGLIAGIATAVKALSP-NTKVIGVEPEGA------PAMAQSL- 210
Query: 348 EVGVLHGALSYLLQNEDGQII---EPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDE 404
G+ + E +I+ GL G + + + V++DE
Sbjct: 211 ---------------AAGKPVTLPEVDTIADGLAVKRPGELTFEIIRKLVDDVVTVSEDE 255
Query: 405 ALEGMKLYL 413
M L
Sbjct: 256 IAAAMLLLF 264
>gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and
metabolism].
Length = 347
Score = 75.7 bits (187), Expect = 5e-15
Identities = 71/316 (22%), Positives = 104/316 (32%), Gaps = 75/316 (23%)
Query: 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKIN---NAVGQALLA 171
L+ V TPL + L+E G IYLKRE+L G+ KI N +
Sbjct: 18 RLKGVV-NPTPLQRSPSLSERL------GAEIYLKRENLQPVGSFKIRGAYNKLSSLSEE 70
Query: 172 KRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYM--GAQDMERQALNVFRMRLLGAEV 229
+ +IA + AG H A R G++ + M ++ A R GAEV
Sbjct: 71 EERAAG-VIAAS-AGNHAQGVAYAAKRLGIKATIVMPETTPKIKVDA-----TRGYGAEV 123
Query: 230 RAVHSGTATLKDATSEAIRDWVTNVETT--HYILGSVAGPHPY-PMMVRDFHAVIGKETR 286
+H DA + A E ++ P+ V I E
Sbjct: 124 I-LHGDNFD--DAYAAAEEL----AEEEGLTFV-------PPFDDPDVIAGQGTIALE-- 167
Query: 287 RQALEKWGGKPDVLIACVGGG---SNAMGLFHEFVNDKDVRLIGVEAAGF-----GLDSG 338
LE+ PD + VGGG S ++++IGVE G L +G
Sbjct: 168 --ILEQLPDLPDAVFVPVGGGGLISGIATALKAL--SPEIKVIGVEPEGAPSMYASLKAG 223
Query: 339 KHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSF-LKDEGRAEY 397
K L +I+ GL G +F + E +
Sbjct: 224 KIVVVLPD-----------------------VGTIADGLAVKRPGDL-TFEILRELVDDI 259
Query: 398 YNVTDDEALEGMKLYL 413
V +DE M+
Sbjct: 260 VLVDEDEICAAMRDLF 275
>gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine
beta-synthase (CBS) and Cysteine synthase. CBS is a
unique heme-containing enzyme that catalyzes a pyridoxal
5'-phosphate (PLP)-dependent condensation of serine and
homocysteine to give cystathionine. Deficiency of CBS
leads to homocystinuria, an inherited disease of sulfur
metabolism characterized by increased levels of the
toxic metabolite homocysteine. Cysteine synthase on the
other hand catalyzes the last step of cysteine
biosynthesis. This subgroup also includes an
O-Phosphoserine sulfhydrylase found in hyperthermophilic
archaea which produces L-cysteine from sulfide and the
more thermostable O-phospho-L-serine.
Length = 291
Score = 67.9 bits (167), Expect = 1e-12
Identities = 61/233 (26%), Positives = 83/233 (35%), Gaps = 44/233 (18%)
Query: 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNA---VGQALLAKRLGKTRII 180
TPL RL+ G G IY K E N G+ K A + A L I
Sbjct: 3 TPLVRLNRLSP------GTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGTTI 56
Query: 181 AETGAGQHGVATATVCARFGLQCIVYM-GAQDMERQALNVFRMRLLGAEVRAVHSGTATL 239
E +G G+ A V A G + I+ M E++ L +R LGAEV
Sbjct: 57 IEPTSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKRKL----LRALGAEVILT---PEAE 109
Query: 240 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDF--------HAVIGKETRRQALE 291
D AI +A P + F H + T + E
Sbjct: 110 ADGMKGAIA-----------KARELAAETPNAFWLNQFENPANPEAHY---ETTAPEIWE 155
Query: 292 KWGGKPDVLIACVGGGSNAMGL---FHEFVNDKDVRLIGVEAAGFGLDSGKHA 341
+ GK D +A VG G G+ E + +VR++GV+ G L SG
Sbjct: 156 QLDGKVDAFVAGVGTGGTITGVARYLKE--KNPNVRIVGVDPVGSVLFSGGPP 206
>gnl|CDD|107206 cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate
(PLP) dependent enzyme that catalyses the last reaction
in the synthesis of threonine from aspartate. It
proceeds by converting O-phospho-L-homoserine (OPH) into
threonine and inorganic phosphate. In plants, OPH is an
intermediate between the methionine and
threonine/isoleucine pathways. Thus threonine synthase
competes for OPH with cystathionine-gamma-synthase, the
first enzyme in the methionine pathway. These enzymes
are in general dimers. Members of this CD, Thr-synth_1,
are widely distributed in bacteria, archaea and higher
plants.
Length = 324
Score = 63.0 bits (154), Expect = 5e-11
Identities = 57/224 (25%), Positives = 86/224 (38%), Gaps = 45/224 (20%)
Query: 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALL---AKRLGKTRII 180
TPL A RL E GG ++Y+K E LN TG+ K G + AK LG +
Sbjct: 23 TPLVRAPRLGE-----RLGGKNLYVKDEGLNPTGSFK---DRGMTVAVSKAKELGVKAVA 74
Query: 181 AETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLK 240
+ G + A AR G++C+V++ A L + GA V AV
Sbjct: 75 CAS-TGNTSASLAAYAARAGIKCVVFLPA-GKALGKLA--QALAYGATVLAVEGNFDDAL 130
Query: 241 DATSEAIRD---WVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGK- 296
E + +++N + + G I E E+ G +
Sbjct: 131 RLVRELAEENWIYLSNSLNPYRLEGQ---------------KTIAFEI----AEQLGWEV 171
Query: 297 PDVLIACVGGGSNAMGL---FHEFVN----DKDVRLIGVEAAGF 333
PD ++ VG G N + F E D+ R++GV+A G
Sbjct: 172 PDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGA 215
>gnl|CDD|223110 COG0031, CysK, Cysteine synthase [Amino acid transport and
metabolism].
Length = 300
Score = 62.6 bits (153), Expect = 6e-11
Identities = 76/322 (23%), Positives = 109/322 (33%), Gaps = 84/322 (26%)
Query: 118 DYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVG---QALLAKRL 174
D +G TPL RL+ G G IY K E N G+ K A+ A L
Sbjct: 7 DLIGN-TPLVRLNRLSP------GTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLL 59
Query: 175 GKTRIIAETGAGQHGVATATVCARFGLQCIVYM-GAQDMERQALNVFRMRLLGAEVRAVH 233
I E +G G+A A V A G + I+ M ER+ L +R LGAEV
Sbjct: 60 KPGGTIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKL----LRALGAEVILTP 115
Query: 234 SGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRD-FHAVIGKETRRQ--AL 290
+K A +E + P + + F E +
Sbjct: 116 GAPGNMKGA-----------IERAKELAAE----IPGYAVWLNQFENPANPEAHYETTGP 160
Query: 291 EKW---GGKPDVLIACVGGGSNAMGLFHEF-VNDKDVRLIGVEAAGFGLDSGKHAATLSK 346
E W GK D +A VG G G+ + +VR++ V+ G L LS
Sbjct: 161 EIWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVL--------LSG 212
Query: 347 GEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYN----VTD 402
GE PH I G+G F+ + + + V+D
Sbjct: 213 GEG--------------------PHKI------EGIGA--GFVPENLDLDLIDEVIRVSD 244
Query: 403 DEALEGMKLYLILPFKLLSRHG 424
+EA+ + +L G
Sbjct: 245 EEAIATAR-------RLAREEG 259
>gnl|CDD|225313 COG2515, Acd, 1-aminocyclopropane-1-carboxylate deaminase [Amino
acid transport and metabolism].
Length = 323
Score = 62.8 bits (153), Expect = 7e-11
Identities = 59/231 (25%), Positives = 94/231 (40%), Gaps = 35/231 (15%)
Query: 118 DYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTG-----AHKINNAVGQALLAK 172
+ + TP+ RL+ H G IY+KR+DL K+ +G+AL
Sbjct: 10 ELIFGPTPIQKLPRLSAHL------GVEIYIKRDDLTGLAFGGNKIRKLEFLLGEAL--- 60
Query: 173 RLGKTRIIAETGAGQ--HGVATATVCARFGLQCIVYM-GAQDMERQALNVFRMRLLGAEV 229
R G ++ G Q H TA V A+ GL+C++ + + N+ +L+GAEV
Sbjct: 61 RKGADTLVT-YGGIQSNHVRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEV 119
Query: 230 RAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQA 289
RAV +GT +A++E + + V G PY + + R A
Sbjct: 120 RAVDAGTDIGINASAEELAEEVRK-----------QGGKPYVIPEGGSSPLGALGYVRLA 168
Query: 290 LE-----KWGGKPDVLIACVGGGSNAMGLFHEFVNDK-DVRLIGVEAAGFG 334
LE + K D ++ G G GL DV +IG++ +
Sbjct: 169 LEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADP 219
>gnl|CDD|107210 cd06449, ACCD, Aminocyclopropane-1-carboxylate deaminase (ACCD):
Pyridoxal phosphate (PLP)-dependent enzyme which
catalyzes the conversion of
1-aminocyclopropane-L-carboxylate (ACC), a precursor of
the plant hormone ethylene, to alpha-ketobutyrate and
ammonia.
Length = 307
Score = 59.0 bits (143), Expect = 1e-09
Identities = 58/228 (25%), Positives = 88/228 (38%), Gaps = 28/228 (12%)
Query: 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGA------HKINNAVGQALLAKRLGKT 177
TP+ + RL+EH GG IY KR+D N A K+ + AL G
Sbjct: 1 TPIQYLPRLSEHL----GGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDAL---AKGAD 53
Query: 178 RIIAETGAGQ--HGVATATVCARFGLQCI------VYMGAQDMERQALNVFRMRLLGAEV 229
++ G Q H A V A+ GL+C+ V +R N+ R++GA+V
Sbjct: 54 TLVT-VGGIQSNHTRQVAAVAAKLGLKCVLVQENWVPYSDAVYDRVG-NILLSRIMGADV 111
Query: 230 RAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQA 289
R V +G + E + V Y++ + HP V Q
Sbjct: 112 RLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLG----GLGYVGFVLEIAQQ 167
Query: 290 LEKWGGKPDVLIACVGGGSNAMGLFHEFVND-KDVRLIGVEAAGFGLD 336
E+ G K D ++ C GS GL + R+IG++A+
Sbjct: 168 EEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEK 215
>gnl|CDD|179673 PRK03910, PRK03910, D-cysteine desulfhydrase; Validated.
Length = 331
Score = 59.1 bits (144), Expect = 1e-09
Identities = 40/134 (29%), Positives = 54/134 (40%), Gaps = 26/134 (19%)
Query: 117 RDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTG-------AHKINNAVGQAL 169
+ G TPL RL+ GP IY+KR+DL TG K+ + AL
Sbjct: 9 LELAGLPTPLEPLPRLSAAL------GPDIYIKRDDL--TGLALGGNKTRKLEFLLADAL 60
Query: 170 LAKRLGKTRIIAETGAGQ--HGVATATVCARFGLQCIVYMGAQDMERQAL-----NVFRM 222
G +I GA Q H TA A+ GL+C++ + NV
Sbjct: 61 ---AQGADTLIT-AGAIQSNHARQTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLD 116
Query: 223 RLLGAEVRAVHSGT 236
L GAE+ V +GT
Sbjct: 117 DLFGAEIHVVPAGT 130
>gnl|CDD|236318 PRK08639, PRK08639, threonine dehydratase; Validated.
Length = 420
Score = 57.5 bits (140), Expect = 5e-09
Identities = 64/230 (27%), Positives = 97/230 (42%), Gaps = 45/230 (19%)
Query: 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKIN---NAVGQALLAK 172
L+D V ETPL + L+E Y G ++YLKREDL ++K+ NA+ Q L+
Sbjct: 19 LKDVV-PETPLQRNDYLSEKY------GANVYLKREDLQPVRSYKLRGAYNAISQ--LSD 69
Query: 173 RLGKTRIIAETGAGQH--GVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230
+ AG H GVA A C G+ +++M +Q ++ ++R G E
Sbjct: 70 E-ELAAGVVCASAGNHAQGVAYA--CRHLGIPGVIFMPVT-TPQQKID--QVRFFGGEFV 123
Query: 231 AVHSGTATLKDATSEAIRDWVTNVETT--HYILGSVAGPHPYPMMVRDFHAVIGKET-RR 287
+ T D+ + A E T +I P+ D + G+ T
Sbjct: 124 EIVLVGDTFDDSAAAAQEY----AEETGATFI-------PPF----DDPDVIAGQGTVAV 168
Query: 288 QALEKWG--GKPDVLIACVGGGSNAMGL---FHEFVNDKDVRLIGVEAAG 332
+ LE+ G PD + VGGG G+ E ++IGVE AG
Sbjct: 169 EILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERS--PKTKIIGVEPAG 216
>gnl|CDD|233712 TIGR02079, THD1, threonine dehydratase. This model represents
threonine dehydratase, the first step in the pathway
converting threonine into isoleucine. At least two other
clades of biosynthetic threonine dehydratases have been
charcterized (TIGR01124 and TIGR01127). Those sequences
described by this model are exclusively found in species
containg the rest of the isoleucine pathway and which
are generally lacking in members of the those other two
clades of threonine dehydratases. Members of this clade
are also often gene clustered with other elements of the
isoleucine pathway [Amino acid biosynthesis, Pyruvate
family].
Length = 409
Score = 57.5 bits (139), Expect = 6e-09
Identities = 59/224 (26%), Positives = 86/224 (38%), Gaps = 23/224 (10%)
Query: 110 EELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQAL 169
E L++ V TPL ERL+E Y G +IYLKREDL ++KI A
Sbjct: 4 EAARKRLKEVV-PHTPLQLNERLSEKY------GANIYLKREDLQPVRSYKIRGAYNFLK 56
Query: 170 LAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229
+ + AG H A C G+ V+M A +++ + R+++ G E
Sbjct: 57 QLSDAQLAKGVVCASAGNHAQGFAYACRHLGVHGTVFMPATTPKQK---IDRVKIFGGEF 113
Query: 230 RAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQA 289
+ T + A VE G+ P P ++ + E Q
Sbjct: 114 IEIILVGDTFDQCAAAAREH----VEDHG---GTFIPPFDDPRIIEG-QGTVAAEILDQL 165
Query: 290 LEKWGGKPDVLIACVGGGSNAMGLFHEFVN-DKDVRLIGVEAAG 332
E KPD ++ VGGG GL ++IGVE G
Sbjct: 166 PE----KPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEG 205
>gnl|CDD|180709 PRK06815, PRK06815, hypothetical protein; Provisional.
Length = 317
Score = 56.2 bits (136), Expect = 8e-09
Identities = 37/115 (32%), Positives = 51/115 (44%), Gaps = 10/115 (8%)
Query: 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLG 175
LR V R TPL + L++H G +YLK E L HTG+ K A + L
Sbjct: 14 LRPQV-RVTPLEHSPLLSQH------TGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQ 66
Query: 176 KTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230
+ + + +G HG A G+ VY Q A+ + +R LGAEVR
Sbjct: 67 RQQGVITASSGNHGQGVALAAKLAGIPVTVYAPEQ---ASAIKLDAIRALGAEVR 118
>gnl|CDD|107209 cd06448, L-Ser-dehyd, Serine dehydratase is a pyridoxal phosphate
(PLP)-dependent enzyme which catalyzes the conversion of
L- , D-serine, or L-threonine to pyruvate/ketobutyrate
and ammonia.
Length = 316
Score = 52.3 bits (126), Expect = 2e-07
Identities = 43/203 (21%), Positives = 75/203 (36%), Gaps = 36/203 (17%)
Query: 143 GPHIYLKREDLNHTGAHK---INNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARF 199
G +++LK E+L +G+ K I + ++ ++ +G G G+A A +
Sbjct: 15 GCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGLNECVHVVCSSG-GNAGLAAAYAARKL 73
Query: 200 GLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHY 259
G+ C + + R V ++R GA V V G +
Sbjct: 74 GVPCTIVVPESTKPRV---VEKLRDEGATV--VVHGKVWWEADNYLRE------------ 116
Query: 260 ILGSVAGPHPYPMMVRDF--------HAVIGKETRRQALEKWGGKPDVLIACVGGGSNAM 311
+A P P+ V F H+ + E +Q + K D ++ VGGG
Sbjct: 117 ---ELAENDPGPVYVHPFDDPLIWEGHSSMVDEIAQQLQSQ--EKVDAIVCSVGGGGLLN 171
Query: 312 GLFH--EFVNDKDVRLIGVEAAG 332
G+ E D+ ++ VE G
Sbjct: 172 GIVQGLERNGWGDIPVVAVETEG 194
>gnl|CDD|181319 PRK08246, PRK08246, threonine dehydratase; Provisional.
Length = 310
Score = 51.5 bits (124), Expect = 3e-07
Identities = 60/214 (28%), Positives = 88/214 (41%), Gaps = 33/214 (15%)
Query: 128 FAERLTEHYRR-------PNGGGP-HIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRI 179
A+R+ H RR G GP ++LK E L HTG+ K A LLA + +
Sbjct: 13 AAQRIAPHIRRTPVLEADGAGFGPAPVWLKLEHLQHTGSFKARGAF-NRLLAAPVPAAGV 71
Query: 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATL 239
+A +G G G+A A A G+ V++ V R+R LGAEV V + A
Sbjct: 72 VAASG-GNAGLAVAYAAAALGVPATVFVPET---APPAKVARLRALGAEVVVVGAEYA-- 125
Query: 240 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVI-GKETRRQALEKWGGKPD 298
+A+ T G++ H Y D V+ G T +E+ D
Sbjct: 126 -----DALEAAQAFAAET----GALL-CHAY-----DQPEVLAGAGTLGLEIEEQAPGVD 170
Query: 299 VLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAG 332
++ VGGG G+ F + R++ VE G
Sbjct: 171 TVLVAVGGGGLIAGIAAWF--EGRARVVAVEPEG 202
>gnl|CDD|235842 PRK06608, PRK06608, threonine dehydratase; Provisional.
Length = 338
Score = 50.5 bits (121), Expect = 7e-07
Identities = 55/195 (28%), Positives = 80/195 (41%), Gaps = 43/195 (22%)
Query: 122 RETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK--TRI 179
TP+ +E L E G I+ K E L TGA K+ + L K GK +I
Sbjct: 22 HLTPIVHSESLNEML------GHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLPDKI 75
Query: 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRL-----LGAEVRAVHS 234
+A + G HG A A FG++ +Y+ LN +++ G EV
Sbjct: 76 VAYS-TGNHGQAVAYASKLFGIKTRIYL--------PLNTSKVKQQAALYYGGEVIL--- 123
Query: 235 GTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVI-GKET-RRQALEK 292
T T ++A +A D + +YI HP D + I G T +AL++
Sbjct: 124 -TNTRQEAEEKAKED---EEQGFYYI-------HPS-----DSDSTIAGAGTLCYEALQQ 167
Query: 293 WGGKPDVLIACVGGG 307
G PD + A GGG
Sbjct: 168 LGFSPDAIFASCGGG 182
>gnl|CDD|233288 TIGR01139, cysK, cysteine synthase A. This model distinguishes
cysteine synthase A (CysK) from cysteine synthase B
(CysM). CysM differs in having a broader specificity
that also allows the use of thiosulfate to produce
cysteine thiosulfonate [Amino acid biosynthesis, Serine
family].
Length = 298
Score = 47.0 bits (112), Expect = 1e-05
Identities = 55/227 (24%), Positives = 89/227 (39%), Gaps = 39/227 (17%)
Query: 135 HYRRPNGGGPHIYLKREDLNHTGAHKIN---NAVGQALLAKRLGKTRIIAETGAGQHGVA 191
R G ++++K E N +G+ K N + A L + I E +G G+A
Sbjct: 12 RLNRIEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGKTIVEPTSGNTGIA 71
Query: 192 TATVCARFGLQCIVYMGAQ-DMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250
A V A G + I+ M +ER+ L ++ GAE+ + G +K A ++A
Sbjct: 72 LAMVAAARGYKLILTMPETMSIERRKL----LKAYGAEL-VLTPGAEGMKGAIAKA---- 122
Query: 251 VTNVETTHYILGSVAGPHP-YPMMVRDFHAVIGKETRRQ--ALEKW---GGKPDVLIACV 304
+A P M++ F E R+ E W GK D +A V
Sbjct: 123 -----------EEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRDTDGKLDAFVAGV 171
Query: 305 GGGSNAMGLFHEFVNDK-DVRLIGVEAAGFGLDSGKHAATLSKGEVG 350
G G G+ K +++++ VE A + LS G+ G
Sbjct: 172 GTGGTITGVGEVLKEQKPNIKIVAVEPAE--------SPVLSGGKPG 210
>gnl|CDD|223572 COG0498, ThrC, Threonine synthase [Amino acid transport and
metabolism].
Length = 411
Score = 46.9 bits (112), Expect = 1e-05
Identities = 86/378 (22%), Positives = 123/378 (32%), Gaps = 86/378 (22%)
Query: 71 DVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRE------- 123
+ G F+P Y E L L + E L E
Sbjct: 18 ALLQGLCPDCGLFLPAEYPYFSLEEIDKLLGL----SYPELAWRYLELLPVGEIPAVSLG 73
Query: 124 ---TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRII 180
TPLY A L N +Y+K N TG+ K LAK LG I+
Sbjct: 74 EGGTPLYKAPALAAPLGVLNDN---LYVKELGHNPTGSFKDRGMTVLVSLAKELGAKTIL 130
Query: 181 AETGAGQHGVATATVCARFGLQCIVYM--GAQDMERQALNVFRMRLLGAEVRAVHSGTAT 238
+ +G G + A AR GL+ V G + A M LGA V AV
Sbjct: 131 CAS-SGNTGASAAAYAARAGLKVFVLYPKGKVSPGKLAQ----MLTLGAHVIAVDGN--- 182
Query: 239 LKDATSEAIRDWVTNVETTHYILGSVAGPHPY---PMMVRDFHAV--IGKETRRQALEKW 293
D E +++ N E + S+ +PY F +G +
Sbjct: 183 -FDDAQELVKE-AANREGLLSAVNSI---NPYRLEGQKTYAFEIAEQLGWK--------- 228
Query: 294 GGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGF--GLDSGKHAATLSKGEVGV 351
PD ++ VG G N + ++ GF GL GK + GV
Sbjct: 229 --APDHVVVPVGNGGNLLAIYK----------------GFKEGLPIGK--IDKAPNMNGV 268
Query: 352 LHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLK-------DEGRAEYYNVTDDE 404
S + P +I+ +D +G ++ + G A V+D+E
Sbjct: 269 QAEGFSPGVYAWKEGRETPETIAPAMD---IGNPSNWERALFALRESGGLAVA--VSDEE 323
Query: 405 ALEGMKL------YLILP 416
LE +KL LI P
Sbjct: 324 ILEAIKLLAEREGILIEP 341
>gnl|CDD|236025 PRK07476, eutB, threonine dehydratase; Provisional.
Length = 322
Score = 46.1 bits (110), Expect = 2e-05
Identities = 39/130 (30%), Positives = 55/130 (42%), Gaps = 18/130 (13%)
Query: 122 RETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKI---NNAVGQALLAKRLGKTR 178
R TPL + L+ P ++LK E L TG+ K+ NA+ L A+ +
Sbjct: 18 RRTPLVASASLSARAGVP------VWLKLETLQPTGSFKLRGATNALLS-LSAQERARGV 70
Query: 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTAT 238
+ A TG HG A A G++ + M + V +R LGAEVR V
Sbjct: 71 VTASTG--NHGRALAYAARALGIRATICMSRLVPANK---VDAIRALGAEVRIVGRSQ-- 123
Query: 239 LKDATSEAIR 248
DA +E R
Sbjct: 124 -DDAQAEVER 132
>gnl|CDD|233338 TIGR01275, ACC_deam_rel, pyridoxal phosphate-dependent enzymes,
D-cysteine desulfhydrase family. This model represents
a family of pyridoxal phosphate-dependent enzymes
closely related to (and often designated as putative
examples of) 1-aminocyclopropane-1-carboxylate
deaminase. It appears that members of this family
include both D-cysteine desulfhydrase (EC 4.4.1.15) and
1-aminocyclopropane-1-carboxylate deaminase (EC
3.5.99.7).
Length = 318
Score = 45.6 bits (108), Expect = 3e-05
Identities = 63/251 (25%), Positives = 99/251 (39%), Gaps = 33/251 (13%)
Query: 118 DYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGA-----HKINNAVGQALLAK 172
+ +G TP+ + RL+++ G IY+KR+DL K+ + AL
Sbjct: 2 ELIGAPTPIQYLPRLSDYL------GREIYIKRDDLTGLAMGGNKIRKLEFLLADAL--- 52
Query: 173 RLGKTRIIAETGAGQ--HGVATATVCARFGLQCIVYM-----GAQDMERQALNVFRMRLL 225
R G +I GA Q H ATA V A+ GL C++ + + N+ L
Sbjct: 53 RKGADTVIT-AGAIQSNHARATAAVAAKLGLHCVLLLRNPIGTTAENYLLNGNLLLDDLF 111
Query: 226 GAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKET 285
GAE R T DA E + + + Y++ V G + + A + E
Sbjct: 112 GAETRIESCEEYTDIDAQLEELAERLEKEGFKPYVI-PVGGSNSLGALGY-VEAAL--EI 167
Query: 286 RRQALEKWGGKPDVLIACVGGGSNA---MGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAA 342
+Q LE +++A GG+ A +GL + DV L+GV + F D
Sbjct: 168 AQQ-LESEVKFDSIVVASGSGGTIAGLSLGL--SHLM-PDVELVGVTVSRFVADQTDKFV 223
Query: 343 TLSKGEVGVLH 353
L + L
Sbjct: 224 NLVQAIAEGLE 234
>gnl|CDD|237111 PRK12483, PRK12483, threonine dehydratase; Reviewed.
Length = 521
Score = 45.2 bits (107), Expect = 5e-05
Identities = 76/271 (28%), Positives = 108/271 (39%), Gaps = 42/271 (15%)
Query: 91 ALSELESALHKLADDRDFQEELSGIL--RDY-VGRETPLYFAERLTEHYRRPNGGGPHIY 147
A +E S + L IL R Y V RETPL A L+ +
Sbjct: 2 APTEAVSPTTIAPRAALLADYLRKILAARVYDVARETPLQRAPNLSARLGNQ------VL 55
Query: 148 LKREDLNHTGAHKINNAVGQA--LLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIV 205
LKREDL + KI A + L A++L + I A G GVA A AR G++ ++
Sbjct: 56 LKREDLQPVFSFKIRGAYNKMARLPAEQLARGVITASAGNHAQGVALAA--ARLGVKAVI 113
Query: 206 YMGAQDMERQALNVFRMRLLGAEV-RAVHSGTATLKDATSEAIRDWVTNVETTHYILGSV 264
M + L V +R G EV S L A A + +T V
Sbjct: 114 VMPRTTPQ---LKVDGVRAHGGEVVLHGESFPDALAHALKLAEEEGLTFV---------- 160
Query: 265 AGPHPYPMMVRDFHAVIGKET-RRQALEKWGGKPDVLIACVGGGSNAMGL--FHEFVNDK 321
P+ D + G+ T + L + G D + VGGG G+ + ++V
Sbjct: 161 ---PPFD----DPDVIAGQGTVAMEILRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVR-P 212
Query: 322 DVRLIGVEAAGFGLDSGKHAATLSKGEVGVL 352
++++IGVE DS A L+ GE VL
Sbjct: 213 EIKVIGVEPD----DSNCLQAALAAGERVVL 239
>gnl|CDD|181283 PRK08197, PRK08197, threonine synthase; Validated.
Length = 394
Score = 44.6 bits (106), Expect = 6e-05
Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 9/106 (8%)
Query: 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAET 183
TPL RL + G +++K E LN TG+ K AK LG + T
Sbjct: 80 TPLLPLPRLGKAL-----GIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGVKHLAMPT 134
Query: 184 GAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229
G G A A AR G++ ++M A + + L GAE+
Sbjct: 135 -NGNAGAAWAAYAARAGIRATIFMPA---DAPEITRLECALAGAEL 176
>gnl|CDD|236339 PRK08813, PRK08813, threonine dehydratase; Provisional.
Length = 349
Score = 44.2 bits (104), Expect = 8e-05
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Query: 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLG 175
LR Y+ TPL++AER ++LK E+L TG++K+ A+ L G
Sbjct: 33 LRRYL-SPTPLHYAERFG------------VWLKLENLQRTGSYKVRGALNALLAGLERG 79
Query: 176 KTRIIAETGAGQHGVATATVCARFGLQCIVYM 207
R + AG H A R G+Q I M
Sbjct: 80 DERPVICASAGNHAQGVAWSAYRLGVQAITVM 111
>gnl|CDD|183494 PRK12390, PRK12390, 1-aminocyclopropane-1-carboxylate deaminase;
Provisional.
Length = 337
Score = 43.9 bits (104), Expect = 9e-05
Identities = 58/233 (24%), Positives = 92/233 (39%), Gaps = 46/233 (19%)
Query: 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTR----I 179
TP++ +RL+ H GG +Y KRED N A N KTR +
Sbjct: 16 TPIHPLKRLSAHL----GGKVELYAKREDCNSGLAFGGN-------------KTRKLEYL 58
Query: 180 IAETGAG-------------QHGVATATVCARFGLQCIVYMGAQDMERQAL-----NVFR 221
+ + A H A V A G++C++ A+ N+
Sbjct: 59 VPDALAQGADTLVSIGGVQSNHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILL 118
Query: 222 MRLLGAEVRAVHSG-TATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAV 280
R++GA+VR V G ++ + +A+ D V Y + + A HP +
Sbjct: 119 SRIMGADVRLVPDGFDIGIRKSWEDALED-VRAAGGKPYAIPAGASDHPLGGL---GFVG 174
Query: 281 IGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVND-KDVRLIGVEAAG 332
+E R Q E G K D ++ C GS G+ F D + R+IG++A+
Sbjct: 175 FAEEVRAQEAE-LGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASA 226
>gnl|CDD|181457 PRK08526, PRK08526, threonine dehydratase; Provisional.
Length = 403
Score = 43.9 bits (104), Expect = 1e-04
Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 13/108 (12%)
Query: 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ-ALLAKRLGKTRIIAE 182
TP +A L++ G +YLK+E+L TGA+KI A + A L++ + +IA
Sbjct: 21 TPFAYAPFLSKI------SGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQKQHGVIAA 74
Query: 183 TGAGQHGVATATVCARFGLQ-CIVYMGAQDMERQALNVFRMRLLGAEV 229
+ AG H A +FG++ IV A + L V + LGAEV
Sbjct: 75 S-AGNHAQGVAISAKKFGIKAVIVMPEATPL----LKVSGTKALGAEV 117
>gnl|CDD|233286 TIGR01136, cysKM, cysteine synthase. This model discriminates
cysteine synthases (EC 2.5.1.47) (both CysK and CysM)
from cystathionine beta-synthase, a protein found
primarily in eukaryotes and carrying a C-terminal CBS
domain lacking from this protein. Bacterial proteins
lacking the CBS domain but otherwise showing
resemblamnce to cystathionine beta-synthases and
considerable phylogenetic distance from known cysteine
synthases were excluded from the seed and score below
the trusted cutoff [Amino acid biosynthesis, Serine
family].
Length = 299
Score = 43.8 bits (104), Expect = 1e-04
Identities = 54/234 (23%), Positives = 86/234 (36%), Gaps = 40/234 (17%)
Query: 118 DYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVG---QALLAKRL 174
+ +G TPL RL G + K E N +G+ K A+ A L
Sbjct: 3 ELIGN-TPLVRLNRLAP------GCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLL 55
Query: 175 GKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQ-DMERQALNVFRMRLLGAEVRAVH 233
I E +G G+A A V A G + I+ M +ER+ L +R GAE+
Sbjct: 56 KPGDTIIEATSGNTGIALAMVAAAKGYKLILTMPETMSLERRKL----LRAYGAELILT- 110
Query: 234 SGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQ--ALE 291
+K A +A +A +M+ F E + E
Sbjct: 111 PAEEGMKGAIDKA---------------EELAAETNKYVMLDQFENPANPEAHYKTTGPE 155
Query: 292 KW---GGKPDVLIACVGGGSNAMGLFHEFVN--DKDVRLIGVE-AAGFGLDSGK 339
W G+ D +A VG G G+ ++ + +++++ VE A L G+
Sbjct: 156 IWRDTDGRIDHFVAGVGTGGTITGV-GRYLKEQNPNIKIVAVEPAESPVLSGGE 208
>gnl|CDD|234409 TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate biosynthesis protein
SbnA. Members of this family include SbnA, a protein of
the staphyloferrin B biosynthesis operon of
Staphylococcus aureus. SbnA and SbnB together appear to
synthesize 2,3-diaminopropionate, a precursor of certain
siderophores and other secondary metabolites. SbnA is a
pyridoxal phosphate-dependent enzyme [Cellular
processes, Biosynthesis of natural products].
Length = 304
Score = 41.8 bits (99), Expect = 4e-04
Identities = 37/129 (28%), Positives = 51/129 (39%), Gaps = 21/129 (16%)
Query: 122 RETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVG---QALLAKRLGKTR 178
TPL ERL ++ K E N G+ K A+ A+ R+
Sbjct: 6 GNTPLVKLERLFPDA------PFRLFAKLEGFNPGGSIKDRPALYILEAAIKRGRITPGT 59
Query: 179 IIAETGAGQHGVATATVCARFGLQ--CIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGT 236
I E+ +G G+A A +CA GL+ C+V D N+ +R GAEV V
Sbjct: 60 TIIESSSGNLGIALAMICAYKGLRFICVV-----DPNISPQNLKLLRAYGAEVEKV---- 110
Query: 237 ATLKDATSE 245
T D T
Sbjct: 111 -TEPDETGG 118
>gnl|CDD|132036 TIGR02991, ectoine_eutB, ectoine utilization protein EutB. Members
of this protein family are EutB, a predicted
arylmalonate decarboxylase found in a conserved ectoine
utilization operon of species that include Sinorhizobium
meliloti 1021 (where it is known to be induced by
ectoine), Mesorhizobium loti, Silicibacter pomeroyi,
Agrobacterium tumefaciens, and Pseudomonas putida.
Members of this family resemble threonine dehydratases.
Length = 317
Score = 41.4 bits (97), Expect = 5e-04
Identities = 36/131 (27%), Positives = 52/131 (39%), Gaps = 14/131 (10%)
Query: 102 LADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKI 161
L D +SG + ETPL + L+E P ++LK E TG+ K+
Sbjct: 3 LQDIERAAARISGRVE-----ETPLVESPSLSELCGVP------VHLKLEHRQTTGSFKL 51
Query: 162 NNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFR 221
A L + + G HG A A A G++ + M + + V
Sbjct: 52 RGATNAVLSLSDTQRAAGVVAASTGNHGRALAYAAAEEGVRATICMSELVPQNK---VDE 108
Query: 222 MRLLGAEVRAV 232
+R LGAEVR V
Sbjct: 109 IRRLGAEVRIV 119
>gnl|CDD|130341 TIGR01274, ACC_deam, 1-aminocyclopropane-1-carboxylate deaminase.
This pyridoxal phosphate-dependent enzyme degrades
1-aminocyclopropane-1-carboxylate, which in plants is a
precursor of the ripening hormone ethylene, to ammonia
and alpha-ketoglutarate. This model includes all members
of this family for which function has been demonstrated
experimentally, but excludes a closely related family
often annotated as putative members of this family
[Central intermediary metabolism, Other].
Length = 337
Score = 41.4 bits (97), Expect = 7e-04
Identities = 56/220 (25%), Positives = 90/220 (40%), Gaps = 22/220 (10%)
Query: 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALL---AKRLGKTRII 180
+P++ RL++H GG +Y KRED N A N L A+ G T ++
Sbjct: 15 SPIHPLPRLSQHL----GGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGCTTLV 70
Query: 181 AETG-AGQHGVATATVCARFGLQCI------VYMGAQDMERQALNVFRMRLLGAEVRAVH 233
+ G A V A G++C+ V +R N+ R++GA+VR
Sbjct: 71 SIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVG-NIQLSRIMGADVRLDP 129
Query: 234 SG-TATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEK 292
G +++ A+ + + I AG +P+ F E R Q E
Sbjct: 130 DGFDIGHRNSWERALEEVRGAGGKPYPI---PAGCSDHPLGGLGF-VGFAFEVREQEGE- 184
Query: 293 WGGKPDVLIACVGGGSNAMGLFHEFVND-KDVRLIGVEAA 331
G K D ++ C GS G+ F D + R+IG++A+
Sbjct: 185 LGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDAS 224
>gnl|CDD|130197 TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, medium form. A
form of threonine dehydratase with two copies of the
C-terminal domain pfam00585 is described by TIGR01124.
This model describes a phylogenetically distinct form
with a single copy of pfam00585. This form branches with
the catabolic threonine dehydratase of E. coli; many
members are designated as catabolic for this reason.
However, the catabolic form lacks any pfam00585 domain.
Many members of this model are found in species with
other Ile biosynthetic enzymes [Amino acid biosynthesis,
Pyruvate family].
Length = 380
Score = 39.7 bits (93), Expect = 0.002
Identities = 56/233 (24%), Positives = 92/233 (39%), Gaps = 42/233 (18%)
Query: 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAET 183
TPL ++ L++ G +YLK E+L TG+ KI A+ + + R +
Sbjct: 1 TPLIYSTTLSDIT------GSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQRGVVAA 54
Query: 184 GAGQHGVATATVCARFGLQCIVYMGAQDMERQA--LNVFRMRLLGAEVRAVHSGTATLKD 241
AG H A +FG++ ++ M A V + GAEV + G D
Sbjct: 55 SAGNHAQGVAYAAKKFGIKAVIV-----MPESAPPSKVKATKSYGAEV--ILHG-----D 102
Query: 242 ATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLI 301
EA + E + HP+ D + G+ T + + D +I
Sbjct: 103 DYDEAYAFATSLAEEEGRVF-----VHPF----DDEFVMAGQGTIGLEIMEDIPDVDTVI 153
Query: 302 ACVGGGSNAMGLFHEFVN-----DKDVRLIGVEAAGFGLDSGKHAATLSKGEV 349
VGGG GL + + +V++IGVEA G + +L +G++
Sbjct: 154 VPVGGG----GLISGVASAAKQINPNVKVIGVEAEG----APSMYESLREGKI 198
>gnl|CDD|236182 PRK08198, PRK08198, threonine dehydratase; Provisional.
Length = 404
Score = 38.2 bits (90), Expect = 0.006
Identities = 72/244 (29%), Positives = 104/244 (42%), Gaps = 55/244 (22%)
Query: 102 LADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKI 161
L D + +E L G++R TPL ++ L+E G +YLK E+L TG+ KI
Sbjct: 6 LDDIEEARERLKGVVR-----RTPLEYSRTLSELT------GAEVYLKCENLQRTGSFKI 54
Query: 162 NNA-VGQALLAKRLGKTRIIAETGAGQH--GVATATVCARFGLQCIVYMGAQDMERQAL- 217
A A L++ ++A + AG H GVA A + G++ + M E L
Sbjct: 55 RGAYNKIASLSEEERARGVVAAS-AGNHAQGVAYAA--SLLGIKATIVMP----ETAPLS 107
Query: 218 NVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDF 277
V R GAEV V G +A ++A E T V HP+ D
Sbjct: 108 KVKATRSYGAEV--VLHGD-VYDEALAKAQEL----AEETGATF--V---HPF-----DD 150
Query: 278 HAVI-GKETRRQALEKWGGKPDV--LIACVGGG------SNAMGLFHEFVNDKDVRLIGV 328
VI G+ T LE PDV ++ +GGG + A+ +VR+IGV
Sbjct: 151 PDVIAGQGT--IGLEILEDLPDVDTVVVPIGGGGLISGVATAVKALR-----PEVRVIGV 203
Query: 329 EAAG 332
+A G
Sbjct: 204 QAEG 207
>gnl|CDD|182672 PRK10717, PRK10717, cysteine synthase A; Provisional.
Length = 330
Score = 37.9 bits (89), Expect = 0.007
Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 16/95 (16%)
Query: 146 IYLKREDLNHTGAHK-------INNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCAR 198
I K E LN G+ K I +A + LL + G T I E AG G+ A V A
Sbjct: 30 ILGKAEFLNPGGSVKDRAALNIIWDAEKRGLL--KPGGT--IVEGTAGNTGIGLALVAAA 85
Query: 199 FGLQCIVYM-GAQDMERQALNVFRMRLLGAEVRAV 232
G + ++ M Q E++ L +R LGAE+ V
Sbjct: 86 RGYKTVIVMPETQSQEKKDL----LRALGAELVLV 116
>gnl|CDD|181133 PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydrogenase; Validated.
Length = 286
Score = 36.5 bits (85), Expect = 0.020
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 184 GAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG--TATLKD 241
GAGQ G A VCAR G+ +V+ + + R R+ + RAV G T +D
Sbjct: 12 GAGQMGAGIAEVCARAGVDVLVF----ETTEELATAGRNRIEKSLERAVSRGKLTERERD 67
Query: 242 ATSEAIR 248
A +R
Sbjct: 68 AALARLR 74
>gnl|CDD|236417 PRK09224, PRK09224, threonine dehydratase; Reviewed.
Length = 504
Score = 36.3 bits (85), Expect = 0.030
Identities = 67/251 (26%), Positives = 101/251 (40%), Gaps = 71/251 (28%)
Query: 120 VGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLN--HT----GAH-KINNAVGQALLAK 172
V +ETPL A +L+ R N + LKREDL + GA+ K+ L +
Sbjct: 17 VAQETPLEKAPKLSA--RLGN----QVLLKREDLQPVFSFKLRGAYNKMAQ-----LTEE 65
Query: 173 RLGKTRIIAETGAGQH--GVATATVCARFGLQCIVYMGAQ--DMERQALNVFRMRLLGAE 228
+L + I A AG H GVA + AR G++ ++ M D++ A+ R G E
Sbjct: 66 QLARGVITAS--AGNHAQGVALSA--ARLGIKAVIVMPVTTPDIKVDAV-----RAFGGE 116
Query: 229 VRAVHSGTATLKDATSEAIRDWVTNVETTH---YILGSVAGPHPYPMMVRDFHAVI---- 281
V V G + +A + AI + +I HP+ D VI
Sbjct: 117 V--VLHG-DSFDEAYAHAIE-----LAEEEGLTFI-------HPF-----DDPDVIAGQG 156
Query: 282 --GKETRRQALEKWGGKPDVLIACVGGGSNAMGL--FHEFVNDKDVRLIGVEAAGFGLDS 337
E +Q D + VGGG G+ + + + ++++IGVE DS
Sbjct: 157 TIAMEILQQ----HPHPLDAVFVPVGGGGLIAGVAAYIKQLR-PEIKVIGVEPE----DS 207
Query: 338 GKHAATLSKGE 348
A L GE
Sbjct: 208 ACLKAALEAGE 218
>gnl|CDD|177651 PLN00011, PLN00011, cysteine synthase.
Length = 323
Score = 35.0 bits (80), Expect = 0.059
Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 38/184 (20%)
Query: 175 GKTRIIAETGAGQHGVATATVCARFGLQCIVYMGA-QDMERQALNVFRMRLLGAEVRAVH 233
GK+ +I T G G+ A + A G + I+ M + +ER+ + +R LGAEV
Sbjct: 68 GKSTLIEATA-GNTGIGLACIGAARGYKVILVMPSTMSLERRII----LRALGAEVH--- 119
Query: 234 SGTATLKDATSEAIRDWVTNVETTHYILGSVAG---PHPY--PMMVRDFHAVIGKETRRQ 288
L D S ++ +E IL G P + P + G E R
Sbjct: 120 -----LTD-QSIGLKG---MLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPEIWRD 170
Query: 289 ALEKWGGKPDVLIACVGGGSNAMGLFHEFVND--KDVRLIGVEAAGFGLDSGKHAATLSK 346
+ GK D+L+A VG G A G+ +F+ + KD+++ VE +A LS
Sbjct: 171 S----AGKVDILVAGVGTGGTATGV-GKFLKEKNKDIKVCVVEPV--------ESAVLSG 217
Query: 347 GEVG 350
G+ G
Sbjct: 218 GQPG 221
>gnl|CDD|232896 TIGR00260, thrC, threonine synthase. Involved in threonine
biosynthesis it catalyses the reaction
O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE +
ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor.
the enzyme is distantly related to the serine/threonine
dehydratases which are also pyridoxal-phosphate
dependent enzymes. the pyridoxal-phosphate binding site
is a Lys (K) residues present at residue 70 of the model
[Amino acid biosynthesis, Aspartate family].
Length = 328
Score = 35.1 bits (81), Expect = 0.062
Identities = 61/307 (19%), Positives = 107/307 (34%), Gaps = 65/307 (21%)
Query: 122 RETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALL-AKRLGKTRII 180
TPL+ + L N G ++Y+ N T + K + + AL A LG ++
Sbjct: 22 GVTPLFRSPALVA-----NVGIKNLYVLELFHNPTLSFK-DRGMAVALTKALELGNDTVL 75
Query: 181 AETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLK 240
+ G G A A + G++ ++ A + + + AEV A+
Sbjct: 76 CAS-TGNTGAAAAAYAGKAGVKVVILYPAGKIS--LGKLAQALGYNAEVVAI-------- 124
Query: 241 DATSEAIRDWVTNVETTHYILG-SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGK-PD 298
D + + V + LG + PY + + +A +A+E+ G + PD
Sbjct: 125 DGNFDDAQRLVKQLFGDKEALGLNSVNSIPYRLEGQKTYAF-------EAVEQLGWEAPD 177
Query: 299 VLIACVGGGSN----AMGL--FHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVL 352
++ V N G E D G++A G A +
Sbjct: 178 KVVVPVPNSGNFGAILKGFKEKKEGGLDSLPVKRGIQAEGA-------ADIVRA------ 224
Query: 353 HGALSYLLQNEDGQIIE---PHSISAGLDYPGVGPEHSFLKDEGRAEYYN-----VTDDE 404
E GQ P ++S +D +G ++ + N V+D+E
Sbjct: 225 --------FLESGQWEPIEDPATLSTAID---IGNPANWERALELFRRSNGNAEDVSDEE 273
Query: 405 ALEGMKL 411
LE +KL
Sbjct: 274 ILEAIKL 280
>gnl|CDD|235789 PRK06381, PRK06381, threonine synthase; Validated.
Length = 319
Score = 34.3 bits (79), Expect = 0.11
Identities = 46/194 (23%), Positives = 72/194 (37%), Gaps = 24/194 (12%)
Query: 146 IYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIV 205
IYLK E N TG K A A RLG + I T G +G + A +GL+ ++
Sbjct: 33 IYLKFEGANPTGTQKDRIAEAHVRRAMRLGYSGITVGT-CGNYGASIAYFARLYGLKAVI 91
Query: 206 YMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVA 265
++ + V M GAE+ V EA+ + +
Sbjct: 92 FIPRSYSNSR---VKEMEKYGAEIIYVDG-------KYEEAVERSRKFAKENGIYDANPG 141
Query: 266 GPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEF-------V 318
+ + + ++ I E E G PD + VG G+ G++H F
Sbjct: 142 SVNSVVDI--EAYSAIAYEI----YEALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGK 195
Query: 319 NDKDVRLIGVEAAG 332
+ R+IGV +G
Sbjct: 196 TSRMPRMIGVSTSG 209
>gnl|CDD|178165 PLN02550, PLN02550, threonine dehydratase.
Length = 591
Score = 33.7 bits (77), Expect = 0.18
Identities = 45/192 (23%), Positives = 70/192 (36%), Gaps = 47/192 (24%)
Query: 24 SSQSPFKLKKFTASPAKSTSIRCTIARDPVVPMEAKKESDPAPWQRPDVFGRFGRFGGKF 83
++ SP + + S S + +R P A + S P + K
Sbjct: 8 TAGSPLRSHIGSPSKPVVGSTPFSRSRIPAAVDSADETSMAPPPPPSPLPLL------KV 61
Query: 84 VPETLMYALSELESALHKLADDRD------FQEELSGILRDYV---GRETPLYFAERLTE 134
P +L Y L A+ + ++ + E L+ IL V E+PL A++L+E
Sbjct: 62 SPNSLQYPAGYL-GAVPERTNEAENGSIPEAMEYLTNILSAKVYDVAIESPLQLAKKLSE 120
Query: 135 HYRRPNGGGPHIYLKREDLNHTGAHKI-------------------------NNAVGQAL 169
G + LKREDL + K+ N+A G AL
Sbjct: 121 RL------GVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQLDKGVICSSAGNHAQGVAL 174
Query: 170 LAKRLGKTRIIA 181
A+RLG +IA
Sbjct: 175 SAQRLGCDAVIA 186
>gnl|CDD|136018 PRK06721, PRK06721, threonine synthase; Reviewed.
Length = 352
Score = 33.5 bits (76), Expect = 0.19
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAET 183
TPL +++ G +Y K E N TG+ K V AK G II +
Sbjct: 29 TPLIPLLNISKQL------GIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGSEAIICAS 82
Query: 184 GAGQHGVATATVCARFGLQCIV 205
G + A AR G++CI+
Sbjct: 83 -TGNTSASAAAYAARLGMKCII 103
>gnl|CDD|235699 PRK06110, PRK06110, hypothetical protein; Provisional.
Length = 322
Score = 33.4 bits (77), Expect = 0.21
Identities = 87/351 (24%), Positives = 125/351 (35%), Gaps = 110/351 (31%)
Query: 88 LMYALSELESALHKLADDRDFQEELSGILRDYVGRE---TPLY----FAERLTEHYRRPN 140
+M+ L+ELE+A V TP Y AERL
Sbjct: 1 MMFTLAELEAA------------------AAVVYAAMPPTPQYRWPLLAERL-------- 34
Query: 141 GGGPHIYLKREDLNHT--GAHKINNAVG--QALLAKRLGKTRIIAETGAGQHGVATATVC 196
G +++K E NHT GA K+ + L + +I+ T G HG + A
Sbjct: 35 --GCEVWVKHE--NHTPTGAFKVRGGLVYFDRLARRGPRVRGVISAT-RGNHGQSVAFAA 89
Query: 197 ARFGLQC-IVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVE 255
R GL IV +E+ A MR LGAE+ + G + A EA R
Sbjct: 90 RRHGLAATIVVPHGNSVEKNA----AMRALGAEL--IEHG-EDFQAAREEAAR------- 135
Query: 256 TTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKP--DVLIACVGGGS----- 308
L + G H MV FH + + ALE + P DV+ +G GS
Sbjct: 136 -----LAAERGLH----MVPSFHPDLVRGVATYALELFRAVPDLDVVYVPIGMGSGICGA 186
Query: 309 ----NAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNED 364
+A+GL R++GV +A A +Y L E
Sbjct: 187 IAARDALGL--------KTRIVGVVSAH----------------------APAYALSFEA 216
Query: 365 GQIIEPHS---ISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEGMKLY 412
G+++ ++ G+ PE + G VTDDE M+ Y
Sbjct: 217 GRVVTTPVATTLADGMACRTPDPEALEVIRAGADRIVRVTDDEVAAAMRAY 267
>gnl|CDD|233287 TIGR01137, cysta_beta, cystathionine beta-synthase. Members of
this family closely resemble cysteine synthase but
contain an additional C-terminal CBS domain. The
function of any bacterial member included in this family
is proposed but not proven [Amino acid biosynthesis,
Serine family].
Length = 454
Score = 33.6 bits (77), Expect = 0.22
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 139 PNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTR---IIAETGAGQHGVATATV 195
G + K E N G+ K A+ A+ G+ + I E +G G+ A V
Sbjct: 21 SKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGDTIIEPTSGNTGIGLALV 80
Query: 196 CARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229
A G +CI+ + + M + ++V ++ LGAE+
Sbjct: 81 AAIKGYKCIIVL-PEKMSNEKVDV--LKALGAEI 111
>gnl|CDD|235757 PRK06260, PRK06260, threonine synthase; Validated.
Length = 397
Score = 33.4 bits (77), Expect = 0.24
Identities = 59/222 (26%), Positives = 87/222 (39%), Gaps = 42/222 (18%)
Query: 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINN-AVGQALLAKRLGKTRII-A 181
TPLY L + G +Y+K E N TG+ K VG A LG + A
Sbjct: 68 TPLYRCPNLEKEL-----GVKELYVKHEGANPTGSFKDRGMTVGVT-KALELGVKTVACA 121
Query: 182 ETGAGQHGVATATVCARFGLQCIVYMGAQDMER----QALNVFRMRLLGAEVRAVHSGTA 237
T G + A AR GL+C V + A + QAL L GA+V V
Sbjct: 122 ST--GNTSASLAAYAARAGLKCYVLLPAGKVALGKLAQAL------LHGAKVLEVDG--- 170
Query: 238 TLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKP 297
D + + + + Y+L S+ +P+ + + IG E Q + P
Sbjct: 171 -NFDDALDMVVELAKEGKI--YLLNSI---NPFRL---EGQKTIGFEIADQLGWEV---P 218
Query: 298 DVLIACVGGGSNAMGL---FHEFVN----DKDVRLIGVEAAG 332
D ++ VG N + F E V DK ++ G++A G
Sbjct: 219 DRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEG 260
>gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase. This model describes
D-xylulose kinases, a subfamily of the FGGY family of
carbohydrate kinases. The member from Klebsiella
pneumoniae, designated DalK (see PMID:9324246), was
annotated erroneously in GenBank as D-arabinitol kinase
but is authentic D-xylulose kinase. D-xylulose kinase
(XylB) generally is found with xylose isomerase (XylA)
and acts in xylose utilization [Energy metabolism,
Sugars].
Length = 481
Score = 33.1 bits (76), Expect = 0.28
Identities = 19/79 (24%), Positives = 27/79 (34%), Gaps = 12/79 (15%)
Query: 234 SGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKW 293
SGT A R W +L ++ P + + G R + +
Sbjct: 174 SGTGWFDVAK----RAWSKE------LLDALDLPESQLPELIESSEKAGT-VRPEVAARL 222
Query: 294 GGKPDVLIACVGGGSNAMG 312
G V +A GGG NA G
Sbjct: 223 GLSAGVPVAA-GGGDNAAG 240
>gnl|CDD|183450 PRK12335, PRK12335, tellurite resistance protein TehB; Provisional.
Length = 287
Score = 32.2 bits (74), Expect = 0.40
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 351 VLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGP 384
VL G L + EDG+ + H A P + P
Sbjct: 39 VLKGELKFYELTEDGEELSEHIFDAENQPPFIEP 72
>gnl|CDD|236317 PRK08638, PRK08638, threonine dehydratase; Validated.
Length = 333
Score = 32.4 bits (74), Expect = 0.47
Identities = 35/126 (27%), Positives = 47/126 (37%), Gaps = 22/126 (17%)
Query: 110 EELSGILRDYVGRETPL----YFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAV 165
E L + R+TPL Y +ER I+LK E++ TG+ KI A
Sbjct: 15 IEAKQRLAGRI-RKTPLPRSNYLSERC----------KGEIFLKLENMQRTGSFKIRGAF 63
Query: 166 GQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYM--GAQDMERQALNVFRMR 223
+ K + + AG H A CA G+ V M GA + A
Sbjct: 64 NKLSSLTDAEKRKGVVACSAGNHAQGVALSCALLGIDGKVVMPKGAPKSKVAA-----TC 118
Query: 224 LLGAEV 229
GAEV
Sbjct: 119 GYGAEV 124
>gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of
the FGGY family of carbohydrate kinases. This subgroup
is composed of D-xylulose kinases (XK, also known as
xylulokinase; EC 2.7.1.17) from bacteria and eukaryota.
They share high sequence similarity with Escherichia
coli xylulokinase (EcXK), which catalyzes the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. Some uncharacterized sequences are also
included in this subfamily. EcXK exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. The presence of Mg2+ or Mn2+ might be
required for catalytic activity. Members of this
subgroup belong to the FGGY family of carbohydrate
kinases.
Length = 487
Score = 32.3 bits (74), Expect = 0.56
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 278 HAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMG 312
G R +A E G DVL+A GGG N MG
Sbjct: 215 DEPAGT-VRPEAAEALGLSGDVLVAS-GGGDNMMG 247
>gnl|CDD|187627 cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reductase (TER) and
2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR.
TTER is a peroxisomal protein with a proposed role in
fatty acid elongation. Fatty acid synthesis is known to
occur in the both endoplasmic reticulum and
mitochondria; peroxisomal TER has been proposed as an
additional fatty acid elongation system, it reduces the
double bond at C-2 as the last step of elongation. This
system resembles the mitochondrial system in that
acetyl-CoA is used as a carbon donor. TER may also
function in phytol metabolism, reducting phytenoyl-CoA
to phytanoyl-CoA in peroxisomes. DECR processes double
bonds in fatty acids to increase their utility in fatty
acid metabolism; it reduces 2,4-dienoyl-CoA to an
enoyl-CoA. DECR is active in mitochondria and
peroxisomes. This subgroup has the Gly-rich NAD-binding
motif of the classical SDR family, but does not display
strong identity to the canonical active site tetrad, and
lacks the characteristic Tyr at the usual position. SDRs
are a functionally diverse family of oxidoreductases
that have a single domain with a structurally conserved
Rossmann fold (alpha/beta folding pattern with a central
beta-sheet), an NAD(P)(H)-binding region, and a
structurally diverse C-terminal region. Classical SDRs
are typically about 250 residues long, while extended
SDRS are approximately 350 residues. Sequence identity
between different SDR enzymes are typically in the
15-30% range, but the enzymes share the Rossmann fold
NAD-binding motif and characteristic NAD-binding and
catalytic sequence patterns. These enzymes have a
3-glycine N-terminal NAD(P)(H)-binding pattern
(typically, TGxxxGxG in classical SDRs and TGxxGxxG in
extended SDRs), while substrate binding is in the
C-terminal region. A critical catalytic Tyr residue
(Tyr-151, human 15-hydroxyprostaglandin dehydrogenase
(15-PGDH) numbering), is often found in a conserved
YXXXK pattern. In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107, 15-PGDH numbering) or additional
Ser, contributing to the active site. Substrates for
these enzymes include sugars, steroids, alcohols, and
aromatic compounds. The standard reaction mechanism is a
proton relay involving the conserved Tyr and Lys, as
well as Asn (or Ser). Some SDR family members, including
17 beta-hydroxysteroid dehydrogenase contain an
additional helix-turn-helix motif that is not generally
found among SDRs.
Length = 249
Score = 31.8 bits (73), Expect = 0.59
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 268 HPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGG 306
HP VRD AV + + L++ GK D+LI G
Sbjct: 56 HPIQCDVRDPEAV--EAAVDETLKE-FGKIDILINNAAG 91
>gnl|CDD|236013 PRK07409, PRK07409, threonine synthase; Validated.
Length = 353
Score = 31.7 bits (73), Expect = 0.81
Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 21/89 (23%)
Query: 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHK---INNAVGQALLAKRLGKTRII 180
TPL A L+E G +Y+K E LN TG+ K + AV + AK G +I
Sbjct: 32 TPLIPAPNLSELL------GVEVYVKYEGLNPTGSFKDRGMTMAVTK---AKEEGAKAVI 82
Query: 181 -AETG---AGQHGVATATVCARFGLQCIV 205
A TG A + A AR GL+ V
Sbjct: 83 CASTGNTSA-----SAAAYAARAGLKAFV 106
>gnl|CDD|180843 PRK07108, PRK07108, acetyl-CoA acetyltransferase; Provisional.
Length = 392
Score = 31.3 bits (71), Expect = 0.96
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 9/55 (16%)
Query: 262 GSVAGPHPYPMMVRDF--HAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLF 314
G++A HPY + HA+I E +R+ G K V+ C+GGG A GLF
Sbjct: 342 GAIAVGHPYGVSGARLTGHALI--EGKRR-----GAKYVVVTMCIGGGQGAAGLF 389
>gnl|CDD|236065 PRK07591, PRK07591, threonine synthase; Validated.
Length = 421
Score = 31.1 bits (71), Expect = 1.3
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 25/117 (21%)
Query: 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALL-AKRLGKTRI-IA 181
TPL A+RL G ++Y+K + +N T + K + V AL A+ LG T + A
Sbjct: 90 TPLVKADRLAREL-----GLKNLYIKDDSVNPTHSFK-DRVVSVALTAARELGFTTVACA 143
Query: 182 ETG--AGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGT 236
TG A + A AR GL V++ A D+E +++G V+ T
Sbjct: 144 STGNLAN----SVAAHAARAGLDSCVFIPA-DLEAG-------KIVGT---LVYGPT 185
>gnl|CDD|173937 cd08178, AAD_C, C-terminal alcohol dehydrogenase domain of the
acetaldehyde dehydrogenase-alcohol dehydrogenase
bifunctional two-domain protein (AAD). Alcohol
dehydrogenase domain located on the C-terminal of a
bifunctional two-domain protein. The N-terminal of the
protein contains an acetaldehyde-CoA dehydrogenase
domain. This protein is involved in pyruvate metabolism.
Pyruvate is converted to acetyl-CoA and formate by
pyruvate formate-lysase (PFL). Under anaerobic
condition, acetyl-CoA is reduced to acetaldehyde and
ethanol by this two-domain protein. Acetyl-CoA is first
converted into an enzyme-bound thiohemiacetal by the
N-terminal acetaldehyde dehydrogenase domain. The
enzyme-bound thiohemiacetal is subsequently reduced by
the C-terminal NAD+-dependent alcohol dehydrogenase
domain. In E. coli, this protein is called AdhE and was
shown pyruvate formate-lysase (PFL) deactivase activity,
which is involved in the inactivation of PFL, a key
enzyme in anaerobic metabolism. In Escherichia coli and
Entamoeba histolytica, this enzyme forms homopolymeric
peptides composed of more than 20 protomers associated
in a helical rod-like structure.
Length = 398
Score = 30.6 bits (70), Expect = 1.6
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 9/39 (23%)
Query: 296 KPDVLIACVGGGS-----NAMGLFHEFVNDKDVRLIGVE 329
KPD +IA +GGGS M LF+E +V +
Sbjct: 78 KPDTIIA-LGGGSPMDAAKIMWLFYEH---PEVDFEDLA 112
>gnl|CDD|129194 TIGR00086, smpB, SsrA-binding protein. This model describes the
SsrA-binding protein, also called tmRNA binding protein,
small protein B, and SmpB. The small, stable RNA SsrA
(also called tmRNA or 10Sa RNA) recognizes stalled
ribosomes such as occur during translation from message
that lacks a stop codon. It becomes charged with Ala
like a tRNA, then acts as mRNA to resume translation
started with the defective mRNA. The short C-terminal
peptide tag added by the SsrA system marks the
abortively translated protein for degradation. SmpB
binds SsrA after its aminoacylation but before the
coupling of the Ala to the nascent polypeptide chain and
is an essential part of the SsrA peptide tagging system.
SmpB has been associated with the survival of bacterial
pathogens in conditions of stress. It is universal in
the first 100 sequenced bacterial genomes [Protein
synthesis, Other].
Length = 144
Score = 29.5 bits (67), Expect = 1.7
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 224 LLGAEVRAVHSGTATLKDATSEAIRD--WVTNVETTHYILGSVAGPHP 269
L G+EV+++ +G +LKD+ + W+ N+ Y G+ P
Sbjct: 24 LKGSEVKSIRAGKVSLKDSYVIIKKGELWLKNMHIAPYKFGNYFNHDP 71
>gnl|CDD|226142 COG3615, TehB, Uncharacterized protein/domain, possibly involved in
tellurite resistance [Inorganic ion transport and
metabolism].
Length = 99
Score = 28.6 bits (64), Expect = 2.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 347 GEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPE 385
G++ VL GA+ +L E+G+ H S +P P+
Sbjct: 38 GKLSVLKGAVKFLGLAEEGETEPEHVFSIEAQFPVFPPQ 76
>gnl|CDD|215204 PLN02356, PLN02356, phosphateglycerate kinase.
Length = 423
Score = 30.0 bits (67), Expect = 2.6
Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 14/122 (11%)
Query: 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVG---QALLAKRLGKTRII 180
TPL L+E G I K E LN G+ K AV +AL + +L ++
Sbjct: 54 TPLIRINSLSE------ATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGGVV 107
Query: 181 AETGAGQHGVATATVCARFGLQC-IVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATL 239
E AG ++ ATV +G +C +V +E+ + + LGA V V + T
Sbjct: 108 TEGSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQI----LEALGATVERVRPVSITH 163
Query: 240 KD 241
KD
Sbjct: 164 KD 165
>gnl|CDD|187643 cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine reductase (KDSR)
and related proteins, classical (c) SDR. These proteins
include members identified as KDSR, ribitol type
dehydrogenase, and others. The group shows strong
conservation of the active site tetrad and glycine rich
NAD-binding motif of the classical SDRs. SDRs are a
functionally diverse family of oxidoreductases that have
a single domain with a structurally conserved Rossmann
fold (alpha/beta folding pattern with a central
beta-sheet), an NAD(P)(H)-binding region, and a
structurally diverse C-terminal region. Classical SDRs
are typically about 250 residues long, while extended
SDRs are approximately 350 residues. Sequence identity
between different SDR enzymes are typically in the
15-30% range, but the enzymes share the Rossmann fold
NAD-binding motif and characteristic NAD-binding and
catalytic sequence patterns. These enzymes catalyze a
wide range of activities including the metabolism of
steroids, cofactors, carbohydrates, lipids, aromatic
compounds, and amino acids, and act in redox sensing.
Classical SDRs have an TGXXX[AG]XG cofactor binding
motif and a YXXXK active site motif, with the Tyr
residue of the active site motif serving as a critical
catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase (15-PGDH)
numbering). In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107, 15-PGDH numbering) contributing
to the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 239
Score = 29.1 bits (66), Expect = 3.4
Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 17/81 (20%)
Query: 288 QALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKG 347
+ GG PD+++ C G GLF + + E G+D G
Sbjct: 74 AQAVEKGGPPDLVVNCAGISI--PGLFED---------LTAEEFERGMD------VNYFG 116
Query: 348 EVGVLHGALSYLLQNEDGQII 368
+ V H L + + G I+
Sbjct: 117 SLNVAHAVLPLMKEQRPGHIV 137
>gnl|CDD|201913 pfam01668, SmpB, SmpB protein.
Length = 68
Score = 27.0 bits (61), Expect = 3.9
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 224 LLGAEVRAVHSGTATLKDA-----TSEAIRDWVTNVETTHYILGS 263
L G EV+++ +G LKD+ EA W+ N + Y +
Sbjct: 25 LTGTEVKSLRAGKVNLKDSYVRIKNGEA---WLINAHISPYKQAN 66
>gnl|CDD|234459 TIGR04082, rSAM_for_selen, selenobiotic family peptide radical SAM
maturase. Members of this protein family are radical
SAM (rSAM) enzymes similar in sequence to others with
known or postulated roles in peptide modification, and
regularly found adjacent to members of the GSU_1558
peptide family described by model TIGR04081. GSU_1558
and several other members of that family appear to be
selenoproteins, hence the term selenobiotic.
Length = 516
Score = 29.3 bits (66), Expect = 4.7
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 51 DPVVPMEAKKESDPAPWQRPDVFGRFGRFGGK--FVPETLMYALSELESALHKLA 103
D + D +P PD+ R F+P+ L+ LE ALH +A
Sbjct: 10 DDEALSRLLGDQDKSPEAFPDLLDSLVRELALPPFLPD-----LARLELALHTVA 59
>gnl|CDD|235994 PRK07334, PRK07334, threonine dehydratase; Provisional.
Length = 403
Score = 29.1 bits (66), Expect = 4.8
Identities = 62/207 (29%), Positives = 84/207 (40%), Gaps = 50/207 (24%)
Query: 143 GPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTR-IIAETGAGQHGVATATVCARFGL 201
G ++LK E+L T + K A+ + LL + R +IA + AG H A R G+
Sbjct: 37 GAEVWLKFENLQFTASFKERGALNKLLLLTEEERARGVIAMS-AGNHAQGVAYHAQRLGI 95
Query: 202 QC-IVYMGAQDMER--QALNVFRMRLLGAEVRAVHSGTATLKDATSEAI----RDWVTNV 254
IV M R + V R R GAEV V G TL +A + A + +T V
Sbjct: 96 PATIV------MPRFTPTVKVERTRGFGAEV--VLHG-ETLDEARAHARELAEEEGLTFV 146
Query: 255 ETTHYILGSVAGPHPYPMMVRDFHAVI-GKETRRQALEKWGGKP--DVLIACVGGGSNAM 311
HPY D AVI G+ T ALE P D L+ +GGG
Sbjct: 147 -------------HPY-----DDPAVIAGQGT--VALEMLEDAPDLDTLVVPIGGG---- 182
Query: 312 GLFHEFVN-----DKDVRLIGVEAAGF 333
GL D+ +IGV+ +
Sbjct: 183 GLISGMATAAKALKPDIEIIGVQTELY 209
>gnl|CDD|221369 pfam12000, Glyco_trans_4_3, Gkycosyl transferase family 4 group.
This domain is found associated with pfam00534.
Length = 172
Score = 28.3 bits (64), Expect = 5.6
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 262 GSVAGPHPYPMMVRDF--HAVIGKETRR--QALEKWGGKPDVLIACVGGGSNAMGLFHEF 317
G+ G HPY +RDF + G+ R + L G +PDV++A G G + L +
Sbjct: 31 GATPGTHPY---LRDFEAAVIRGQAVARAARQLRAQGFRPDVIVAHPGWG-ETLFLKDVW 86
Query: 318 VNDKDVRLIG 327
D RLIG
Sbjct: 87 ---PDARLIG 93
>gnl|CDD|237515 PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol
dehydrogenase; Provisional.
Length = 862
Score = 29.0 bits (66), Expect = 5.7
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 6/26 (23%)
Query: 296 KPDVLIACVGGGS-----NAMGLFHE 316
KPD +IA +GGGS M LF+E
Sbjct: 539 KPDTIIA-LGGGSPMDAAKIMWLFYE 563
>gnl|CDD|218707 pfam05704, Caps_synth, Capsular polysaccharide synthesis protein.
This family consists of several capsular polysaccharide
proteins. Capsular polysaccharide (CPS) is a major
virulence factor in Streptococcus pneumoniae.
Length = 279
Score = 28.8 bits (65), Expect = 6.0
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 414 ILPFKLLSRHGGLWL 428
IL LL+++GGLW+
Sbjct: 116 ILRLNLLAKYGGLWI 130
>gnl|CDD|130194 TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, biosynthetic, long
form. This model describes a form of threonine
ammonia-lyase, a pyridoxal-phosphate dependent enzyme,
with two copies of the threonine dehydratase C-terminal
domain (pfam00585). Members with known function
participate in isoleucine biosynthesis and are inhibited
by isoleucine. Alternate name: threonine deaminase,
threonine dehydratase. Forms scoring between the trusted
and noise cutoff tend to branch with this subgroup of
threonine ammonia-lyase phylogenetically but have only a
single copy of the C-terminal domain [Amino acid
biosynthesis, Pyruvate family].
Length = 499
Score = 28.9 bits (65), Expect = 6.2
Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 31/86 (36%)
Query: 120 VGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKI------------------ 161
+ETPL A +L+E I +KREDL + K+
Sbjct: 14 AAQETPLQKAAKLSERLGN------RILIKREDLQPVFSFKLRGAYNKMAQLSPEQKARG 67
Query: 162 -------NNAVGQALLAKRLGKTRII 180
N+A G A A RLG +I
Sbjct: 68 VIAASAGNHAQGVAFSAARLGLKALI 93
>gnl|CDD|225145 COG2236, COG2236, Predicted phosphoribosyltransferases [General
function prediction only].
Length = 192
Score = 28.1 bits (63), Expect = 6.6
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 275 RDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVE 329
+ H + + + G KPDV++A GG + +F+ K + I VE
Sbjct: 10 EEIHRLCRALAEK--IRASGFKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVE 62
>gnl|CDD|99996 cd04300, GT1_Glycogen_Phosphorylase, This is a family of
oligosaccharide phosphorylases. It includes yeast and
mammalian glycogen phosphorylases, plant starch/glucan
phosphorylase, as well as the maltodextrin
phosphorylases of bacteria. The members of this family
catalyze the breakdown of oligosaccharides into
glucose-1-phosphate units. They are important allosteric
enzymes in carbohydrate metabolism. The allosteric
control mechanisms of yeast and mammalian members of
this family are different from that of bacterial
members. The members of this family belong to the GT-B
structural superfamily of glycoslytransferases, which
have characteristic N- and C-terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two
domains includes the catalytic center and permits a high
degree of flexibility.
Length = 797
Score = 29.0 bits (66), Expect = 6.9
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 8/40 (20%)
Query: 92 LSELESALHKLADDRDFQEELSGI-------LRDYVGRET 124
L +L+ L ADD F +E I L Y+ + T
Sbjct: 484 LDQLK-KLEPFADDPAFLKEFRAIKQANKERLAAYIKKTT 522
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.412
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,791,235
Number of extensions: 2290085
Number of successful extensions: 2251
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2169
Number of HSP's successfully gapped: 90
Length of query: 439
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 339
Effective length of database: 6,502,202
Effective search space: 2204246478
Effective search space used: 2204246478
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)