Query 013597
Match_columns 439
No_of_seqs 167 out of 197
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:27:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013597.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013597hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2625 Uncharacterized conser 100.0 1.4E-98 3E-103 692.8 8.2 341 87-437 1-348 (348)
2 PF06159 DUF974: Protein of un 100.0 1.8E-70 3.8E-75 531.8 27.7 234 88-321 1-249 (249)
3 PF07919 Gryzun: Gryzun, putat 99.9 5.1E-21 1.1E-25 205.4 34.1 313 88-419 177-554 (554)
4 KOG4386 Uncharacterized conser 99.8 4.4E-20 9.6E-25 188.4 -1.0 310 99-438 446-800 (809)
5 PF12735 Trs65: TRAPP traffick 99.1 1.9E-08 4.1E-13 101.0 21.3 107 327-436 157-306 (306)
6 PF08626 TRAPPC9-Trs120: Trans 98.2 0.00023 4.9E-09 83.8 24.7 300 90-403 788-1184(1185)
7 PF12742 Gryzun-like: Gryzun, 97.7 8.2E-05 1.8E-09 55.5 5.8 50 362-417 8-57 (57)
8 PF12584 TRAPPC10: Trafficking 97.6 0.0023 5.1E-08 57.5 13.9 80 336-421 24-114 (147)
9 PF07705 CARDB: CARDB; InterP 96.7 0.021 4.6E-07 46.6 10.3 79 326-413 2-80 (101)
10 PF00927 Transglut_C: Transglu 96.5 0.0054 1.2E-07 51.8 5.5 72 334-411 6-83 (107)
11 PF07919 Gryzun: Gryzun, putat 95.6 2.7 5.9E-05 45.3 22.6 219 195-413 11-276 (554)
12 PF10633 NPCBM_assoc: NPCBM-as 95.2 0.05 1.1E-06 43.2 5.8 72 100-175 4-78 (78)
13 PF14874 PapD-like: Flagellar- 94.9 0.31 6.6E-06 40.4 9.8 73 93-172 12-86 (102)
14 PF07705 CARDB: CARDB; InterP 93.4 0.28 6E-06 39.9 6.6 77 93-176 11-87 (101)
15 PF05753 TRAP_beta: Translocon 92.5 1.7 3.7E-05 40.6 11.1 81 335-418 30-111 (181)
16 PF10633 NPCBM_assoc: NPCBM-as 91.2 0.69 1.5E-05 36.6 6.1 59 340-404 2-60 (78)
17 PF05753 TRAP_beta: Translocon 89.3 3.1 6.8E-05 38.8 9.7 82 98-180 35-118 (181)
18 PF11797 DUF3324: Protein of u 87.4 4.7 0.0001 35.8 9.2 93 95-191 33-130 (140)
19 smart00809 Alpha_adaptinC2 Ada 86.3 12 0.00027 30.7 10.7 74 100-177 17-90 (104)
20 PF14874 PapD-like: Flagellar- 84.9 6.9 0.00015 32.1 8.5 66 338-411 15-81 (102)
21 PF02883 Alpha_adaptinC2: Adap 84.2 22 0.00048 29.9 11.5 75 99-177 22-101 (115)
22 PF00207 A2M: Alpha-2-macroglo 82.8 5.5 0.00012 32.5 6.9 42 323-366 51-92 (92)
23 PF00927 Transglut_C: Transglu 81.4 1.9 4.1E-05 36.2 3.7 75 95-171 9-87 (107)
24 PF06159 DUF974: Protein of un 71.3 27 0.00058 34.2 9.2 76 339-414 10-87 (249)
25 PF00635 Motile_Sperm: MSP (Ma 69.9 13 0.00028 30.7 5.8 56 342-407 17-72 (109)
26 KOG3865 Arrestin [Signal trans 68.5 17 0.00037 36.7 7.0 29 98-126 207-235 (402)
27 PF06030 DUF916: Bacterial pro 67.9 25 0.00054 30.5 7.3 60 342-402 26-101 (121)
28 KOG3865 Arrestin [Signal trans 63.0 43 0.00092 34.0 8.6 89 325-417 192-289 (402)
29 PF14524 Wzt_C: Wzt C-terminal 60.9 58 0.0013 27.7 8.4 95 96-194 30-130 (142)
30 PF14796 AP3B1_C: Clathrin-ada 60.8 22 0.00047 32.1 5.7 50 345-400 87-136 (145)
31 PF11614 FixG_C: IG-like fold 60.6 29 0.00063 29.5 6.3 73 324-405 7-85 (118)
32 COG2847 Copper(I)-binding prot 60.4 74 0.0016 28.9 9.0 103 91-204 20-142 (151)
33 COG1361 S-layer domain [Cell e 59.6 2.5E+02 0.0053 30.0 16.3 147 87-236 153-311 (500)
34 PF03896 TRAP_alpha: Transloco 59.0 1.3E+02 0.0028 30.2 11.4 92 87-180 85-183 (285)
35 TIGR03769 P_ac_wall_RPT actino 57.1 25 0.00055 24.6 4.3 34 159-192 8-41 (41)
36 PF01345 DUF11: Domain of unkn 55.7 20 0.00043 27.9 4.2 33 94-126 34-66 (76)
37 PF14796 AP3B1_C: Clathrin-ada 54.9 35 0.00076 30.7 6.0 80 78-162 63-142 (145)
38 PF09624 DUF2393: Protein of u 53.8 88 0.0019 27.7 8.5 61 99-159 60-132 (149)
39 PF08626 TRAPPC9-Trs120: Trans 51.9 76 0.0017 38.1 9.9 73 335-418 643-719 (1185)
40 PF06280 DUF1034: Fn3-like dom 50.6 97 0.0021 25.9 7.9 78 341-420 6-101 (112)
41 PF12735 Trs65: TRAPP traffick 50.2 1.8E+02 0.004 29.2 11.1 46 142-187 256-301 (306)
42 KOG1931 Putative transmembrane 48.4 30 0.00064 40.3 5.4 57 362-420 1069-1125(1156)
43 PF13584 BatD: Oxygen toleranc 48.1 2.7E+02 0.0059 29.5 12.6 130 270-418 72-220 (484)
44 TIGR01451 B_ant_repeat conserv 46.9 38 0.00081 24.8 4.1 31 97-127 8-38 (53)
45 KOG3317 Translocon-associated 45.1 1.7E+02 0.0036 27.2 8.7 74 342-418 41-115 (188)
46 COG5066 SCS2 VAMP-associated p 41.8 79 0.0017 30.3 6.3 73 347-431 21-93 (242)
47 PF13584 BatD: Oxygen toleranc 38.6 5E+02 0.011 27.5 27.5 104 326-437 271-382 (484)
48 PF15146 FANCAA: Fanconi anemi 38.2 66 0.0014 33.8 5.6 83 328-414 59-149 (435)
49 PF01345 DUF11: Domain of unkn 35.5 1.5E+02 0.0033 22.7 6.3 46 321-368 19-64 (76)
50 PF13473 Cupredoxin_1: Cupredo 33.3 1E+02 0.0022 25.4 5.2 56 335-410 33-88 (104)
51 PF00207 A2M: Alpha-2-macroglo 29.9 2.2E+02 0.0048 22.9 6.6 37 189-225 49-88 (92)
52 COG1470 Predicted membrane pro 29.2 2.4E+02 0.0053 30.3 8.1 74 329-404 270-343 (513)
53 PF00630 Filamin: Filamin/ABP2 28.1 3.1E+02 0.0067 21.8 8.1 67 97-172 17-90 (101)
54 TIGR02745 ccoG_rdxA_fixG cytoc 27.7 2.4E+02 0.0053 30.0 8.1 88 324-420 322-418 (434)
55 TIGR00192 urease_beta urease, 27.6 1.5E+02 0.0032 25.1 5.1 15 346-360 21-35 (101)
56 PF08033 Sec23_BS: Sec23/Sec24 27.5 1.1E+02 0.0025 24.9 4.5 40 143-182 44-85 (96)
57 PF09478 CBM49: Carbohydrate b 26.8 1.4E+02 0.0031 23.5 4.9 50 105-155 21-76 (80)
58 PF14728 PHTB1_C: PTHB1 C-term 26.8 3.1E+02 0.0067 28.6 8.5 80 106-189 2-84 (377)
59 PRK13202 ureB urease subunit b 26.4 1.6E+02 0.0034 25.0 5.1 16 345-360 21-36 (104)
60 PF09624 DUF2393: Protein of u 26.0 2.8E+02 0.0062 24.4 7.2 39 329-368 49-87 (149)
61 PF14524 Wzt_C: Wzt C-terminal 26.0 2.2E+02 0.0048 23.9 6.4 91 337-435 29-126 (142)
62 PF07760 DUF1616: Protein of u 25.5 5.8E+02 0.013 25.3 10.0 101 334-437 182-286 (287)
63 KOG1953 Targeting complex (TRA 24.7 1.8E+02 0.0039 34.2 6.6 70 339-418 689-761 (1235)
64 PF00345 PapD_N: Pili and flag 24.3 2.3E+02 0.005 23.8 6.0 50 346-400 17-70 (122)
65 COG1361 S-layer domain [Cell e 24.3 8.8E+02 0.019 25.8 31.6 293 97-414 43-355 (500)
66 PF02752 Arrestin_C: Arrestin 24.1 1.2E+02 0.0026 25.3 4.2 28 97-124 16-43 (136)
67 PRK13201 ureB urease subunit b 23.6 1.7E+02 0.0037 26.0 4.9 15 346-360 21-35 (136)
68 PF11906 DUF3426: Protein of u 23.5 2.6E+02 0.0057 24.4 6.5 60 341-404 66-136 (149)
69 PF03944 Endotoxin_C: delta en 23.0 1.9E+02 0.0042 25.4 5.4 26 209-234 117-143 (143)
70 KOG1953 Targeting complex (TRA 22.5 78 0.0017 36.9 3.3 37 377-414 1175-1211(1235)
71 KOG1366 Alpha-macroglobulin [P 21.9 6.1E+02 0.013 31.4 10.7 43 333-381 767-809 (1436)
72 cd05755 Ig2_ICAM-1_like Second 21.8 93 0.002 26.1 2.9 25 330-354 4-28 (100)
73 PF11611 DUF4352: Domain of un 21.4 2.9E+02 0.0062 22.9 6.0 69 102-170 37-112 (123)
74 PRK13204 ureB urease subunit b 21.4 1.9E+02 0.0041 26.3 4.9 24 389-415 93-116 (159)
75 PF04314 DUF461: Protein of un 21.0 3.2E+02 0.0068 23.0 6.1 62 102-172 15-85 (110)
76 PF03896 TRAP_alpha: Transloco 20.9 8.1E+02 0.018 24.6 9.8 79 337-418 93-177 (285)
77 TIGR03517 GldM_gliding gliding 20.8 5.3E+02 0.012 28.2 9.2 81 93-195 242-322 (523)
78 TIGR01451 B_ant_repeat conserv 20.0 1.6E+02 0.0035 21.4 3.6 25 336-360 5-29 (53)
No 1
>KOG2625 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.4e-98 Score=692.83 Aligned_cols=341 Identities=31% Similarity=0.542 Sum_probs=318.1
Q ss_pred cccccccccceeecceEEEEEEEEcCCCcceEEEEEEEEEeCCCeeEeccCCCCCCccccCCCCeeeEEEEEEccccCce
Q 013597 87 LLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAH 166 (439)
Q Consensus 87 ~L~LP~sfG~iylGEtFs~~i~v~N~s~~~v~~V~ikaelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h 166 (439)
+|.+||.||+|||||||++||+|||+|++.|++|.+|+||||.+||+.|... .....+++|.++.+.+|+||+||+|+|
T Consensus 1 ~l~~pq~f~niflgetfs~yinv~nds~k~v~~i~lk~dlqtssqrl~l~~s-~~~~aei~~~~c~~~vi~hevkeig~h 79 (348)
T KOG2625|consen 1 MLIAPQMFENIFLGETFSFYINVHNDSEKTVKDILLKADLQTSSQRLNLPAS-NAAAAEIEPDCCEDDVIHHEVKEIGQH 79 (348)
T ss_pred CccchhhhcceeeccceEEEEEEecchhhhhhhheeeecccccceeeccccc-hhhhhhcCccccchhhhhHHHHhhccE
Confidence 4789999999999999999999999999999999999999999999999653 345778999999999999999999999
Q ss_pred EEEEEEEEEcCCCceeeeceEEEEEeecCeEEEEEEEEe-------CCceEEEEEEEecccccEEEEeEEeeecCCceee
Q 013597 167 TLVCTALYSDGEGERKYLPQFFKFIVSNPLSVRTKVRVV-------KEITFLEACIENHTKSNLYMDQVEFEPSQNWSAT 239 (439)
Q Consensus 167 ~L~c~VsY~~~~Ge~~~frK~fkF~v~~Pl~VktK~~~~-------~~~~~LEaqiqN~s~~~l~le~v~Lep~~~~~~~ 239 (439)
+|+|+|+|++++||.++|||||||+|.+|+|||||||++ .+++||||||||+|..+|+||+|+|+|+.+|.++
T Consensus 80 ilicavny~tq~ge~myfrkffkf~v~kpidvktkfynaesdlssv~~dvfleaqien~s~a~mflekv~ldps~~ynvt 159 (348)
T KOG2625|consen 80 ILICAVNYKTQAGEKMYFRKFFKFPVLKPIDVKTKFYNAESDLSSVNDDVFLEAQIENMSNANMFLEKVELDPSIHYNVT 159 (348)
T ss_pred EEEEEEeeeccCccchhHHhhccccccccccccceeecccccccccchhhhhhhhhhcccccchhhhhhccCchheecce
Confidence 999999999999999999999999999999999999976 5889999999999999999999999999999999
Q ss_pred eecCCCCCCCCCCccccccCCceEEeCCCCeeeEEEEEeecCCCCCCCccccCceeeEEEEEEEEcCCCCCceeeEEEEe
Q 013597 240 MLKADGPHSDYNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGRLQTQQIL 319 (439)
Q Consensus 240 ~ln~~~~~~~~~~~~~~~~~~~~l~~~~gd~~q~lf~l~~~~~~~~~~~~~~g~~~lGkL~I~WRs~~Ge~G~LqTs~l~ 319 (439)
+++.+.+.++..++ |... .+++|.|+|||||||+|+.+..++....++.+.+|||||.||++|||+|||||++||
T Consensus 160 ~i~~~~e~gdcvst----fg~~-~~lkp~d~rq~l~cl~pk~d~~~~~gi~k~lt~igkldi~wktnlgekgrlqts~lq 234 (348)
T KOG2625|consen 160 EIAHEDEAGDCVST----FGSG-ALLKPKDIRQFLFCLKPKADFAEKAGIIKDLTSIGKLDISWKTNLGEKGRLQTSALQ 234 (348)
T ss_pred eecchhhccccccc----cccc-cccCccchhhheeecCchHHHHHhhccccccceeeeeEEEeeccccccccchHHHHH
Confidence 99987777665443 3332 247789999999999999887655555788999999999999999999999999999
Q ss_pred eecCccCCeEEEEEecCceeEeCCcEEEEEEEEeCCCCCcccEEEEEEeCCCCCcceEEEecccceeecccCCCCeeEEE
Q 013597 320 GTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFH 399 (439)
Q Consensus 320 ~~~p~~~dl~l~v~~~P~~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~ 399 (439)
|++|+++|++|+++.+|+.|.+++||.++|+|+|||+|.|| |++.+++.. ..-++|||+++++||+|.|.+...|.
T Consensus 235 riapgygdvrlsle~~p~~vdleepf~iscki~ncserald-l~l~l~~~n---nrhi~~c~~sg~qlgkl~ps~~l~~a 310 (348)
T KOG2625|consen 235 RIAPGYGDVRLSLEAIPACVDLEEPFEISCKITNCSERALD-LQLELCNPN---NRHIHFCGISGRQLGKLHPSQHLCFA 310 (348)
T ss_pred hhcCCCCceEEEeeccccccccCCCeEEEEEEcccchhhhh-hhhhhcCCC---CceeEEeccccccccCCCCcceeeeE
Confidence 99999999999999999999999999999999999999999 999998864 45799999999999999999999999
Q ss_pred EEEEecccceEEeCceEEEecCCCeEeccCCCeeeEee
Q 013597 400 LNLIATKLGVQRITGITVFDKLEKITYDSLPDLEIFVD 437 (439)
Q Consensus 400 L~l~pl~~Glq~isgI~l~D~~~~r~y~~~~~~~vfV~ 437 (439)
|+++|...|+|+|+||+|+|+++||+|||||++||||.
T Consensus 311 l~l~~~~~giqsisgiritdtf~kr~ye~ddiaqi~v~ 348 (348)
T KOG2625|consen 311 LNLFPSTQGIQSISGIRITDTFLKRIYEHDDIAQICVS 348 (348)
T ss_pred EeeccchhcceeecceEeehhhhhhhhcccchHHhhcC
Confidence 99999999999999999999999999999999999984
No 2
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=100.00 E-value=1.8e-70 Score=531.81 Aligned_cols=234 Identities=44% Similarity=0.706 Sum_probs=207.7
Q ss_pred ccccccccceeecceEEEEEEEEcCCCcceEEEEEEEEEeCCCe--eEeccCCCCC--CccccCCCCeeeEEEEEEcccc
Q 013597 88 LVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQ--RILLLDTSKS--PVESIRAGGRYDFIVEHDVKEL 163 (439)
Q Consensus 88 L~LP~sfG~iylGEtFs~~i~v~N~s~~~v~~V~ikaelqT~s~--r~~L~~~~~~--~~~~L~pg~~ld~iv~~~lke~ 163 (439)
|+||+|||+|||||||+||||+||+++++|++|.|||||||+++ |+.|.++... ++.+|+||+++|+||+|+|||+
T Consensus 1 L~LP~sfG~iylGEtF~~~l~~~N~s~~~v~~v~ikvemqT~s~~~r~~L~~~~~~~~~~~~L~p~~~l~~iv~~~lkE~ 80 (249)
T PF06159_consen 1 LTLPQSFGSIYLGETFSCYLSVNNDSNKPVRNVRIKVEMQTPSQSLRLPLSDNENSDSPVASLAPGESLDFIVSHELKEL 80 (249)
T ss_pred CCCCcccCCEeecCCEEEEEEeecCCCCceEEeEEEEEEeCCCCCccccCCCCccccccccccCCCCeEeEEEEEEeeec
Confidence 78999999999999999999999999999999999999999999 9999876544 5788999999999999999999
Q ss_pred CceEEEEEEEEEcC---CCceeeeceEEEEEeecCeEEEEEEEEeCC--------ceEEEEEEEecccccEEEEeEEeee
Q 013597 164 GAHTLVCTALYSDG---EGERKYLPQFFKFIVSNPLSVRTKVRVVKE--------ITFLEACIENHTKSNLYMDQVEFEP 232 (439)
Q Consensus 164 G~h~L~c~VsY~~~---~Ge~~~frK~fkF~v~~Pl~VktK~~~~~~--------~~~LEaqiqN~s~~~l~le~v~Lep 232 (439)
|+|+|+|+|+|+++ +||+|+|||+|||+|.+||+||||++++.+ ++||||||||+|+.||+||+|+|+|
T Consensus 81 G~h~L~c~VsY~~~~~~~g~~~tfRK~ykF~v~~PL~VktK~~~~~~~~~~~~~~~~~LEaqlqN~s~~pl~Le~v~lep 160 (249)
T PF06159_consen 81 GNHTLVCTVSYTDPTETSGERRTFRKFYKFQVLNPLSVKTKVYNLEDDSSLSPRERVFLEAQLQNISSGPLFLEKVKLEP 160 (249)
T ss_pred CceEEEEEEEEecCcccCCccceEeeeeEEeCCCCcEEEEEEEecCCccccccceeEEEEEEEEecCCCceEEEEEEeec
Confidence 99999999999999 999999999999999999999999999976 9999999999999999999999999
Q ss_pred cCCceeeeecCCCCCCCCCCccccccCCceEEeCCCCeeeEEEEEeecCCCCCCCccccCceeeEEEEEEEEcCCCCCce
Q 013597 233 SQNWSATMLKADGPHSDYNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGR 312 (439)
Q Consensus 233 ~~~~~~~~ln~~~~~~~~~~~~~~~~~~~~l~~~~gd~~q~lf~l~~~~~~~~~~~~~~g~~~lGkL~I~WRs~~Ge~G~ 312 (439)
.++|++.++||+....+.......+......+++|+|+|||||+|+++..........+++.+||||+|.||++|||+||
T Consensus 161 ~~~~~~~~ln~~~~~~~~~~~~~~~~~~~~~~L~P~d~~qylF~l~~~~~~~~~~~~~~~~~~lGkL~I~WRs~~Ge~Gr 240 (249)
T PF06159_consen 161 SPGFKVTDLNWEPSGESSDGEFGGISSGSRPYLQPGDVRQYLFCLTPKPEGAQNDSGADGRTNLGKLDIVWRSNMGERGR 240 (249)
T ss_pred CCCceeEecccccccccccccccccccCCcceeCCCCEEEEEEEEEECCccccccccccCcceeeEEEEEEECCCCCCce
Confidence 99999999998664433221111111122346889999999999999987443455678899999999999999999999
Q ss_pred eeEEEEeee
Q 013597 313 LQTQQILGT 321 (439)
Q Consensus 313 LqTs~l~~~ 321 (439)
|||++|+|.
T Consensus 241 LqT~~L~rr 249 (249)
T PF06159_consen 241 LQTSQLQRR 249 (249)
T ss_pred eehhhcccC
Confidence 999999873
No 3
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function. The region in question is approximately 150 residues long.
Probab=99.90 E-value=5.1e-21 Score=205.36 Aligned_cols=313 Identities=17% Similarity=0.227 Sum_probs=226.6
Q ss_pred ccccccccceeecceEEEEEEEEcCCCcceEEEEEEEEEeC---------CCeeEe------ccC----CCCCCccccCC
Q 013597 88 LVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQT---------DKQRIL------LLD----TSKSPVESIRA 148 (439)
Q Consensus 88 L~LP~sfG~iylGEtFs~~i~v~N~s~~~v~~V~ikaelqT---------~s~r~~------L~~----~~~~~~~~L~p 148 (439)
+.+|..-+-+|+||.+..-|.|.|.++.....+. .+.+.. ...... ..+ ....+++.|++
T Consensus 177 I~~~~~~~~~l~gE~~~i~i~I~n~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~l~~ 255 (554)
T PF07919_consen 177 IKLPNHKPPALTGEFYPIPITISNNEDEEASGVL-EVRLLHPSQLGVSSEETEDLSQVNWDSDKDDEPLFLGIPLGELAP 255 (554)
T ss_pred EEeCCCCCCeEcCCEEEEEEEEEcCCCccceeEE-EEEEecccccccccccCccceecccccccccchhccCcccccCCC
Confidence 4456788899999999999999999877655543 333330 011110 000 01235778999
Q ss_pred CCeeeEEEEEEccccCceEEEEEEEEEc--CC--CceeeeceEEEEEeecCe----EEEEEEE-----------------
Q 013597 149 GGRYDFIVEHDVKELGAHTLVCTALYSD--GE--GERKYLPQFFKFIVSNPL----SVRTKVR----------------- 203 (439)
Q Consensus 149 g~~ld~iv~~~lke~G~h~L~c~VsY~~--~~--Ge~~~frK~fkF~v~~Pl----~VktK~~----------------- 203 (439)
|++....++......|.+.|.++++|.. .+ +-.-+-.+.+++.+.+|| ++.++++
T Consensus 256 ~~s~~~~l~i~~~~~~~~~L~i~~~Y~l~~~~~~~~~i~~~~~~~l~~~~PF~~~y~~~~~~~~~~~~~p~~f~~~~~~~ 335 (554)
T PF07919_consen 256 GSSITVTLYIRTSRPGEYELSISVSYHLDVESDPETPISKTKTVQLPVINPFEANYDFSPRFHPDPWDMPSPFDVDGSSD 335 (554)
T ss_pred CCcEEEEEEEEeCCceeEEEEEEEEEEEecCCCCceeEEEeEEEeeeEEcCEEeeeeEEeeeccCCccCCcccccccccc
Confidence 9999999999999999999999999975 32 223344667999999999 6666664
Q ss_pred -----------------EeCCceEEEEEEEecccccEEEEeEEeeecCCceeeeecCCCCCCCCCCccccccCCceEEeC
Q 013597 204 -----------------VVKEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGPHSDYNAQSREIFKPPVLIRS 266 (439)
Q Consensus 204 -----------------~~~~~~~LEaqiqN~s~~~l~le~v~Lep~~~~~~~~ln~~~~~~~~~~~~~~~~~~~~l~~~ 266 (439)
..+.+++|.++++|.++++|.|+++.|+.................. . ......++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~s~a~~~L~I~~~~l~~~~~~~~~~~~~~~~~~~-~-------~~~~~~l~ 407 (554)
T PF07919_consen 336 FQTLNPEPLTRDGILSVGLNQPWCLNSDIESFAPEPLEIEDISLEVLSSNGGASCDVSSEDSS-S-------PESGTVLQ 407 (554)
T ss_pred cccccccccccccccccccCCCeEEEccceecCCCceEEEEEEEEEecCCCceeeeecccccc-C-------CCccceeC
Confidence 1235689999999999999999999999766544332211110000 0 00112345
Q ss_pred CCCeeeEEEEEe--ecCCCCCCCccccCceeeEEEEEEEEc-CCCCCceeeEEEEeeecCccCCeEEEE-EecCceeEeC
Q 013597 267 GGGIHNYLYQLK--MLSHGSSSPVKVQGSNVLGKLQITWRT-NLGEPGRLQTQQILGTTITSKEIELNV-VEVPSVVGID 342 (439)
Q Consensus 267 ~gd~~q~lf~l~--~~~~~~~~~~~~~g~~~lGkL~I~WRs-~~Ge~G~LqTs~l~~~~p~~~dl~l~v-~~~P~~v~l~ 342 (439)
+++.+...|++. ..... .........+|.+.|.||| ..+..+...++.+..+.....+.++.| .++|+...++
T Consensus 408 ~~~~~~~~f~~~~~~~~~~---~~~~~~~~~~g~~~I~WrR~~~~s~~~~~~t~l~lP~~~v~~~~~~v~~~~p~~~~~~ 484 (554)
T PF07919_consen 408 PGECREDQFCLRLDVQKLS---LDDRRNVTLLGSLVIKWRRNSSNSSDPVVTTPLPLPRVNVPSSPLRVLASVPPSAIVG 484 (554)
T ss_pred ccccccccccccccccccc---cccCccceeEEEEEEEEEECCCCCCCceEEEEeecCceEccCCCcEEEEecCCccccC
Confidence 678887777743 21111 1123446889999999999 556657777777654433344444454 3789999999
Q ss_pred CcEEEEEEEEeCCCCCcccEEEEEEeCCCCCcceEEEecccceeecccCCCCeeEEEEEEEecccceEEeCceEEEe
Q 013597 343 KPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFD 419 (439)
Q Consensus 343 ~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl~~Glq~isgI~l~D 419 (439)
.||+++|+|.|+|.+.+. +.+.|+.++ +|+++|.+...+ .|.|++..++.++|+|+.+|++.+|.++|.|
T Consensus 485 ~~~~l~~~I~N~T~~~~~-~~~~me~s~-----~F~fsG~k~~~~-~llP~s~~~~~y~l~pl~~G~~~lP~l~v~d 554 (554)
T PF07919_consen 485 EPFTLSYTIENPTNHFQT-FELSMEPSD-----DFMFSGPKQTTF-SLLPFSRHTVRYNLLPLVAGWWILPRLKVRD 554 (554)
T ss_pred cEEEEEEEEECCCCccEE-EEEEEccCC-----CEEEECCCcCce-EECCCCcEEEEEEEEEccCCcEECCcEEEeC
Confidence 999999999999999998 999998765 699999999999 5999999999999999999999999999987
No 4
>KOG4386 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=4.4e-20 Score=188.37 Aligned_cols=310 Identities=16% Similarity=0.153 Sum_probs=225.4
Q ss_pred ecceEEEEEEEEcCCCcceEEEEEEEEEeCCC-----eeE--eccCC-----------CCCCccccCCCCeeeEEEEEEc
Q 013597 99 LGETFCSYISINNSSTLEVRDVVIKAEIQTDK-----QRI--LLLDT-----------SKSPVESIRAGGRYDFIVEHDV 160 (439)
Q Consensus 99 lGEtFs~~i~v~N~s~~~v~~V~ikaelqT~s-----~r~--~L~~~-----------~~~~~~~L~pg~~ld~iv~~~l 160 (439)
--|.++.++.|.-+.+..++++..||++..+. +|- .++.- ...+.+.+-+|+...+....++
T Consensus 446 ~~E~~~~~lki~~~kts~~~e~~~kv~~~~Ge~tsLT~rn~~k~~~~~~~~d~~~~~~k~~~a~~v~~~EQ~~Kmlyvrc 525 (809)
T KOG4386|consen 446 HVENIIGFLKIGVAKTSVKLESVEKVDCLIGEVTSLTIRNTCKSSPIHGLLDFKRKEQKHAEAAAVLFVEQELKMLYVRC 525 (809)
T ss_pred chheEEEEEEeeechhhhhhhhhhhcCcccccccceeeecccccCCchhhhhhhhHhhccCchhhcchHHHHHHHHHHhh
Confidence 35788889999999999999999999988773 121 11110 1245677888888888888888
Q ss_pred cccCceEEEEEEEEEcCCC-cee----eece--EEEEEeecCeEEEEEEE-----EeCC-----ceEEEEEEEecccccE
Q 013597 161 KELGAHTLVCTALYSDGEG-ERK----YLPQ--FFKFIVSNPLSVRTKVR-----VVKE-----ITFLEACIENHTKSNL 223 (439)
Q Consensus 161 ke~G~h~L~c~VsY~~~~G-e~~----~frK--~fkF~v~~Pl~VktK~~-----~~~~-----~~~LEaqiqN~s~~~l 223 (439)
-..|.....+.|+|-.++. |.+ .+.| .-..+..-||+|+-||. .+.+ .+.|+..+-..++|.+
T Consensus 526 gtvgsrmflvyvsyLinttVeekeivckchkdeTvtietvfpfdvavkFvstkfehlervyadIpfllmtdLlsaspwAl 605 (809)
T KOG4386|consen 526 GTVGSRMFLVYVSYLINTTVEEKEIVCKCHKDETVTIETVFPFDVAVKFVSTKFEHLERVYADIPFLLMTDLLSASPWAL 605 (809)
T ss_pred hhhccchhhHHHHHHhhhHHHHhhHhhhccccceEEEEEEeeeeeeeeeehhhhhhccChhhhhhHHHHHHHhhhchHHH
Confidence 8889888888899987541 101 1222 23334444555555554 4432 2444555556688888
Q ss_pred EEEeEEeeecCCceeeeecCCCCCCCCCCccccccCCceEEeCCCCeeeEEEEEeecCCCCCCCccccCceeeEEEEEEE
Q 013597 224 YMDQVEFEPSQNWSATMLKADGPHSDYNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITW 303 (439)
Q Consensus 224 ~le~v~Lep~~~~~~~~ln~~~~~~~~~~~~~~~~~~~~l~~~~gd~~q~lf~l~~~~~~~~~~~~~~g~~~lGkL~I~W 303 (439)
.|-..+++-.+.++-++ +. ++ +...+++|.|++...+||+.+..- ...+|.++.|++.|+|
T Consensus 606 tIVsSelqlapsmttvd-ql-------eS------qvdnvilqtgEsasecfclqcpsl-----gniEggvatGhyiisW 666 (809)
T KOG4386|consen 606 TIVSSELQLAPSMTTVD-QL-------ES------QVDNVILQTGESASECFCLQCPSL-----GNIEGGVATGHYIISW 666 (809)
T ss_pred HHHHHHHhhhhhheeee-cc-------cc------cccchhhhcccceeeeeeEecccc-----ccccCCCccceEEEEE
Confidence 88877777666555432 11 11 334556788999999999999754 3468899999999999
Q ss_pred EcCCC--CCceeeEEEEeeecCccCCeEEEEE-ecCceeEeCCcEEEEEEEEeCCCCCcccEEEEEEeCCCCCcceEEEe
Q 013597 304 RTNLG--EPGRLQTQQILGTTITSKEIELNVV-EVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMIN 380 (439)
Q Consensus 304 Rs~~G--e~G~LqTs~l~~~~p~~~dl~l~v~-~~P~~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~ 380 (439)
|+... ..-. -|+-+...-.....++|+|. ++|+..++++|..+.+.+.|+|+..++ ++++++++| +||++
T Consensus 667 kRtsameNipi-ittVitLphviVe~iPlhvnadlpsfgrVReslpvkyhLqnktdlvqd-veisvepsD-----aFMFS 739 (809)
T KOG4386|consen 667 KRTSAMENIPI-ITTVITLPHVIVEAIPLHVNADLPSFGRVRESLPVKYHLQNKTDLVQD-VEISVEPSD-----AFMFS 739 (809)
T ss_pred eecccccCCCc-eeeecccccceeeeccceeecCCCCcceecccccEEEEeccccceeee-EEeecccch-----hheec
Confidence 98533 4433 33433333334677788886 899999999999999999999999998 999999876 89999
Q ss_pred cccceeecccCCCCeeEEEEEEEecccceEEeCceEEEecC-------CCeEeccCCCeeeEeec
Q 013597 381 GLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDKL-------EKITYDSLPDLEIFVDQ 438 (439)
Q Consensus 381 G~s~~~Lg~L~P~~s~~~~L~l~pl~~Glq~isgI~l~D~~-------~~r~y~~~~~~~vfV~~ 438 (439)
|.+.++| ++.||.+.++.++++|+.+|+|++|.|.|.-.+ +-|++ -++.|||++
T Consensus 740 Glkqirl-riLPGteqemlynfypLmAGyqqlPslninllrfpnfTnQllrRf---iPtsIFVkP 800 (809)
T KOG4386|consen 740 GLKQIRL-RILPGTEQEMLYNFYPLMAGYQQLPSLNINLLRFPNFTNQLLRRF---IPTSIFVKP 800 (809)
T ss_pred ccceEEE-EEcCCCceEEEEEEehhhchhhhCCcccccCccCCchHHHHHHhh---cCceEEEcc
Confidence 9999999 899999999999999999999999998886322 22334 688999975
No 5
>PF12735 Trs65: TRAPP trafficking subunit Trs65; InterPro: IPR024662 This family is one of the subunits of the TRAPP Golgi trafficking complex []. TRAPP subunits are found in two different sized complexes, TRAPP I and TRAPP II. While both complexes contain the same seven subunits, Bet3p, Bet5p, Trs20p, Trs23p, Trs31p, Trs33p and Trs85p, with TRAPPC human equivalents, TRAPP II has the additional three subunits ,Trs65p, Trs120p and Trs130p []. While it has been implicated in cell wall biogenesis and stress response, the role of Trs65 in TRAPP II is supported by the findings that the protein co-localises with Trs130p, and deletion of TRS65 in yeast leads to a conditional lethal phenotype if either one of the other TRAPP II-specific subunits is modified []. Furthermore, the trs65 mutant has reduced Ypt31/32p guanine nucleotide exchange, GEF, activity []. Trs65 is also known as killer toxin-resistance protein 11.
Probab=99.07 E-value=1.9e-08 Score=101.03 Aligned_cols=107 Identities=20% Similarity=0.277 Sum_probs=90.0
Q ss_pred CeEEEEEecCceeEeCCcEEEEEEEEeCCCCCcccEEEEEEeCC------------------------------------
Q 013597 327 EIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQND------------------------------------ 370 (439)
Q Consensus 327 dl~l~v~~~P~~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~------------------------------------ 370 (439)
.+.++.. -|..|+++++|..++.|.|+|+..++ |.|.+.+..
T Consensus 157 gv~~sF~-gp~~V~~Ge~F~w~v~ivN~S~~~r~-L~l~~~~~r~~~~~~~~~~~~~~~~s~~~~~~~~~~~v~~en~~~ 234 (306)
T PF12735_consen 157 GVTFSFS-GPSSVKVGEPFSWKVFIVNRSSSPRK-LALYVPPRRRRNDERSNSPPPNPSSSSNLNNKQIADAVTDENIVQ 234 (306)
T ss_pred CeEEEEe-CCceEecCCeEEEEEEEEECCCCCee-EEEEecCccccccccccCCCCCcccccccccccccccceehhHHH
Confidence 3334432 36889999999999999999999998 999888711
Q ss_pred ------CCC-cceEEEecccceeecccCCCCeeEEEEEEEecccceEEeCceEEEecCCCeEeccCCCeeeEe
Q 013597 371 ------SDE-EKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDKLEKITYDSLPDLEIFV 436 (439)
Q Consensus 371 ------~~~-~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl~~Glq~isgI~l~D~~~~r~y~~~~~~~vfV 436 (439)
... ..++++-.. .+++|.|.||++..+.|.|+|+.+|++.|.||+|+|..++..+|+.+..+|||
T Consensus 235 ~~~~~~~~~~~~gli~Lsn-DiriGpL~P~~c~~~eL~fi~l~~G~~~L~~lkvvDl~t~e~~di~~l~~IvV 306 (306)
T PF12735_consen 235 AMQKYSSVEESTGLICLSN-DIRIGPLAPGACYSVELRFIALSPGVHNLEGLKVVDLNTNEHVDIGDLPDIVV 306 (306)
T ss_pred HhhhhcccccCCceEEecc-cccccccCCCceEEEEEEEEEeccceEeecceEEEECCCCceEEeCCCceEEC
Confidence 000 235655555 68999999999999999999999999999999999999999999999999997
No 6
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=98.23 E-value=0.00023 Score=83.76 Aligned_cols=300 Identities=19% Similarity=0.247 Sum_probs=174.1
Q ss_pred ccccccceeecceEEEEEEEEcCCCcceEEEEEEEEEeCC-------CeeE-e---ccCCC-----CC-----CccccCC
Q 013597 90 LPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTD-------KQRI-L---LLDTS-----KS-----PVESIRA 148 (439)
Q Consensus 90 LP~sfG~iylGEtFs~~i~v~N~s~~~v~~V~ikaelqT~-------s~r~-~---L~~~~-----~~-----~~~~L~p 148 (439)
++++-=.+|=||+..+.|.+.|.|+.+|..+.++..=.|. ..+- . +++.+ .. .-..|+|
T Consensus 788 l~~~~~mlleGE~~~~~ItL~N~S~~pvd~l~~sf~DS~~~~~~~~l~~k~l~~~e~yelE~~l~~~~~~~i~~~~~I~P 867 (1185)
T PF08626_consen 788 LTQGALMLLEGEKQTFTITLRNTSSVPVDFLSFSFQDSTIEPLQKALSNKDLSPDELYELEWQLFKLPAFRILNKPPIPP 867 (1185)
T ss_pred CCCcceEEECCcEEEEEEEEEECCccccceEEEEEEeccHHHHhhhhhcccCChhhhhhhhhhhhcCcceeecccCccCC
Confidence 4555556799999999999999999999999888741111 0000 0 00000 00 0017899
Q ss_pred CCeeeEEEEEEcccc--CceEEEEEEEEEc--CCCceeeece---EEEEEeecCeEEE-EEEEEe---------------
Q 013597 149 GGRYDFIVEHDVKEL--GAHTLVCTALYSD--GEGERKYLPQ---FFKFIVSNPLSVR-TKVRVV--------------- 205 (439)
Q Consensus 149 g~~ld~iv~~~lke~--G~h~L~c~VsY~~--~~Ge~~~frK---~fkF~v~~Pl~Vk-tK~~~~--------------- 205 (439)
|++..+-++...+.. ..+-....+.|.. .+++..+.|+ -+...|.+-++|. -.+..+
T Consensus 868 g~~~~~~~~~~~~~~~~~~~~~~i~l~y~~~~~~~~~~y~Rql~ipl~vtV~~slev~~~dilp~~~~~~~~~~~~~~~~ 947 (1185)
T PF08626_consen 868 GESATFTVEVDGKPGPIQLTYADIQLEYGYSGEDSSTFYTRQLSIPLTVTVNPSLEVTRCDILPLNSDSVSSNSDSWISY 947 (1185)
T ss_pred CCEEEEEEEecCcccccceeeeeEEEEecccCCCCCCCeeEEEEEEEEEEEeceEEEeeeeEEecccccccccCcchhhh
Confidence 999999888776653 2444555567763 2344555566 3555555665543 333333
Q ss_pred ------------CCceEEEEEEEecccccEEEEeEEeeecCCceeee--ecCCCCCCCCCC---ccccc------cC-Cc
Q 013597 206 ------------KEITFLEACIENHTKSNLYMDQVEFEPSQNWSATM--LKADGPHSDYNA---QSREI------FK-PP 261 (439)
Q Consensus 206 ------------~~~~~LEaqiqN~s~~~l~le~v~Lep~~~~~~~~--ln~~~~~~~~~~---~~~~~------~~-~~ 261 (439)
.+-.+|...|.|....+|.++ +.+ ...+...+ +.. +.... |...+ +. .|
T Consensus 948 ~~~~~~~~~~~~~~~clL~lDlrNsw~~~~~v~-l~~--~~~~~~~~~~I~p----g~t~Ri~vPi~Ri~l~~~~~~~~p 1020 (1185)
T PF08626_consen 948 ITSLKSDVNDDSSDYCLLLLDLRNSWPNPLSVN-LHY--DEDFSSSEITIEP----GHTSRIIVPIKRIYLEDPDFSFKP 1020 (1185)
T ss_pred hhhhcccccCCCCCeEEEEEEEEecCCCceEEE-EEe--ccCccccceEECC----CCeEEEEEEecccccCCcccccCc
Confidence 134788999999999988731 122 22222211 111 10000 00000 00 11
Q ss_pred eEEeCCCCeeeEEEEEeecCCCCCCCccccC-----ceeeEEEEEEEEcCCCCCceeeEEEEe----eec--CccCCeEE
Q 013597 262 VLIRSGGGIHNYLYQLKMLSHGSSSPVKVQG-----SNVLGKLQITWRTNLGEPGRLQTQQIL----GTT--ITSKEIEL 330 (439)
Q Consensus 262 ~l~~~~gd~~q~lf~l~~~~~~~~~~~~~~g-----~~~lGkL~I~WRs~~Ge~G~LqTs~l~----~~~--p~~~dl~l 330 (439)
+.+....|||+=. +.... .....+. ...+-+|...|+...+..|.+.--.+. ++. .-.+++.+
T Consensus 1021 --ip~l~~~rqfv~s---k~s~e-ee~~~re~FW~RE~ll~~l~~~W~~~~~~~G~i~lR~~irLt~~mv~~L~~~~i~i 1094 (1185)
T PF08626_consen 1021 --IPSLSRNRQFVVS---KLSEE-EERAMRELFWYREELLSRLKGTWKESSNSSGEIDLRGIIRLTPRMVDILRLDPIQI 1094 (1185)
T ss_pred --CCCcccCceeEEC---CCCHH-HHHHHHHHHHHHHHHHhhcceEEEcCCCCcEEEEcccccccCHHHHHhhccCccce
Confidence 1112244565422 11110 0000111 145889999999876668888766652 121 22556655
Q ss_pred EEE---ecCc---------eeEeCCcEEEEEEEEeCCCCCcccEEEEEEeCC------CCCcceEEEecccceeecccCC
Q 013597 331 NVV---EVPS---------VVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQND------SDEEKVVMINGLRIMALAPVEA 392 (439)
Q Consensus 331 ~v~---~~P~---------~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~------~~~~~~~~~~G~s~~~Lg~L~P 392 (439)
.+. +-+. .+.+++.++++++|+|++++++. +.+....+. .+...-++|+|.....++.|+|
T Consensus 1095 ~~~l~~~~~~~~~~~~~~~~v~~~~f~~l~v~i~N~s~~~i~-l~~~~~~~~~~~~~~~~~~~ril~~G~Lq~~l~~l~p 1173 (1185)
T PF08626_consen 1095 DFSLSDDSDSVKVGESSKFSVQVDEFYTLRVTITNRSSRPIS-LRLQPSLDHQNGNVALDLDRRILWNGSLQQPLPELEP 1173 (1185)
T ss_pred EEEEcccccccccCcceeEEEecCCcEEEEEEeecCCCCcee-eEeeeeccCCCcccccCcCCeEEEEccCcccccccCC
Confidence 543 1222 36799999999999999999876 433332221 1235579999999999999999
Q ss_pred CCeeEEEEEEE
Q 013597 393 FGSTDFHLNLI 403 (439)
Q Consensus 393 ~~s~~~~L~l~ 403 (439)
+++.++.+.++
T Consensus 1174 ~~~~~~~~~li 1184 (1185)
T PF08626_consen 1174 GESTEHELSLI 1184 (1185)
T ss_pred CceEEEEEEEE
Confidence 99999999876
No 7
>PF12742 Gryzun-like: Gryzun, putative Golgi trafficking
Probab=97.74 E-value=8.2e-05 Score=55.48 Aligned_cols=50 Identities=18% Similarity=0.265 Sum_probs=44.8
Q ss_pred EEEEEEeCCCCCcceEEEecccceeecccCCCCeeEEEEEEEecccceEEeCceEE
Q 013597 362 FEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITV 417 (439)
Q Consensus 362 l~l~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl~~Glq~isgI~l 417 (439)
+.|.+++++ .|+++|.+.+++ .+.||+..++.++++|+..|++.+|.|.|
T Consensus 8 lli~V~~n~-----~F~v~G~~~~~~-~~~~~~~~~i~~~Fipl~aG~~~LP~I~I 57 (57)
T PF12742_consen 8 LLIEVDKND-----NFIVCGPKKMNF-HMWPGQKFEIPYNFIPLTAGFLKLPKINI 57 (57)
T ss_pred eEEEEcCCC-----ceEEEccceeEE-EEccCceEEEEEEEEEeehheecCccccC
Confidence 557777654 899999999998 89999999999999999999999999864
No 8
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].
Probab=97.56 E-value=0.0023 Score=57.50 Aligned_cols=80 Identities=14% Similarity=0.260 Sum_probs=62.9
Q ss_pred CceeEeCCcEEEEEEEEeC-----------CCCCcccEEEEEEeCCCCCcceEEEecccceeecccCCCCeeEEEEEEEe
Q 013597 336 PSVVGIDKPFLLKLKLTNQ-----------TDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIA 404 (439)
Q Consensus 336 P~~v~l~~pF~v~~~v~N~-----------s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~p 404 (439)
+...++++|..++++|+|. .+.... +...+..+ ...++++|.+...+ .+..++..+|.+.|+|
T Consensus 24 ~~~~~vGqpi~~~l~I~~~~~W~~~~~~~~~~~~~~-~~yei~a~----~~~WlV~Grrrg~f-~~~~~~~~~~~l~LIP 97 (147)
T PF12584_consen 24 PPPCRVGQPIPAELRIKNSRKWSSEDQEESSNEDTE-FMYEIVAD----SDNWLVSGRRRGVF-SLSDGSEHEIPLTLIP 97 (147)
T ss_pred CcceEeCCeEEEEEEEEEcccCCccccccccCCCcc-EEEEEecC----CCcEEEeccCcceE-EecCCCeEEEEEEEEe
Confidence 4567999999999999995 122223 44445332 24799999998777 5589999999999999
Q ss_pred cccceEEeCceEEEecC
Q 013597 405 TKLGVQRITGITVFDKL 421 (439)
Q Consensus 405 l~~Glq~isgI~l~D~~ 421 (439)
|..|+-.+|.|+|....
T Consensus 98 L~~G~L~lP~V~i~~~~ 114 (147)
T PF12584_consen 98 LRAGYLPLPKVEIRPYD 114 (147)
T ss_pred cccceecCCEEEEEecc
Confidence 99999999999998544
No 9
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=96.69 E-value=0.021 Score=46.60 Aligned_cols=79 Identities=11% Similarity=0.185 Sum_probs=56.0
Q ss_pred CCeEEEEEecCceeEeCCcEEEEEEEEeCCCCCcccEEEEEEeCCCCCcceEEEecccceeecccCCCCeeEEEEEEEec
Q 013597 326 KEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIAT 405 (439)
Q Consensus 326 ~dl~l~v~~~P~~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl 405 (439)
.||.+.+...|..+..++++++++.|+|.-.....++.+.+..++ ... ....++.|.||++..+.+++-+-
T Consensus 2 pDL~v~~~~~~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~-----~~~----~~~~i~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 2 PDLTVSITVSPSNVVPGEPVTITVTVKNNGTADAENVTVRLYLDG-----NSV----STVTIPSLAPGESETVTFTWTPP 72 (101)
T ss_dssp --EEE-EEEC-SEEETTSEEEEEEEEEE-SSS-BEEEEEEEEETT-----EEE----EEEEESEB-TTEEEEEEEEEE-S
T ss_pred CCEEEEEeeCCCcccCCCEEEEEEEEEECCCCCCCCEEEEEEECC-----cee----ccEEECCcCCCcEEEEEEEEEeC
Confidence 467776678899999999999999999995555555778776553 122 34567899999999999999999
Q ss_pred ccceEEeC
Q 013597 406 KLGVQRIT 413 (439)
Q Consensus 406 ~~Glq~is 413 (439)
.+|.+.|.
T Consensus 73 ~~G~~~i~ 80 (101)
T PF07705_consen 73 SPGSYTIR 80 (101)
T ss_dssp S-CEEEEE
T ss_pred CCCeEEEE
Confidence 99988853
No 10
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=96.48 E-value=0.0054 Score=51.79 Aligned_cols=72 Identities=13% Similarity=0.197 Sum_probs=54.5
Q ss_pred ecCceeEeCCcEEEEEEEEeCCCCCcccEEEEEEeCCCCCcceEEEeccc------ceeecccCCCCeeEEEEEEEeccc
Q 013597 334 EVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLR------IMALAPVEAFGSTDFHLNLIATKL 407 (439)
Q Consensus 334 ~~P~~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s------~~~Lg~L~P~~s~~~~L~l~pl~~ 407 (439)
++++.+.++++|.+.++++|.++..+..+.+.+.-. .+.++|.. ......|.|+++..+.+.+.|...
T Consensus 6 ~~~~~~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~------~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~~y 79 (107)
T PF00927_consen 6 KLPGDPVVGQDFTVSVSFTNPSSEPLRNVSLNLCAF------TVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITPSQY 79 (107)
T ss_dssp EEESEEBTTSEEEEEEEEEE-SSS-EECEEEEEEEE------EEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HHSH
T ss_pred EECCCccCCCCEEEEEEEEeCCcCccccceeEEEEE------EEEECCcccccEeEEEcceeeCCCCEEEEEEEEEceeE
Confidence 567788899999999999999888844477777543 57777774 335678999999999999999999
Q ss_pred ceEE
Q 013597 408 GVQR 411 (439)
Q Consensus 408 Glq~ 411 (439)
|-.+
T Consensus 80 G~~~ 83 (107)
T PF00927_consen 80 GPKQ 83 (107)
T ss_dssp EEEC
T ss_pred ecch
Confidence 9843
No 11
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function. The region in question is approximately 150 residues long.
Probab=95.58 E-value=2.7 Score=45.32 Aligned_cols=219 Identities=12% Similarity=0.164 Sum_probs=119.2
Q ss_pred CeEEEEEEEE----eCCceEEEEEEEecccccEEEEeEEeeecCCceeeeecCCCC-CCCCCCcc---ccccCCceEEeC
Q 013597 195 PLSVRTKVRV----VKEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGP-HSDYNAQS---REIFKPPVLIRS 266 (439)
Q Consensus 195 Pl~VktK~~~----~~~~~~LEaqiqN~s~~~l~le~v~Lep~~~~~~~~ln~~~~-~~~~~~~~---~~~~~~~~l~~~ 266 (439)
+|+.+..|.. .++.+.+++.|.+..+.||.+.++++.-+..-.-..+..+.. ....+.+. ...-....+.+.
T Consensus 11 ~l~~~~~F~~~~~~~~~~~~~ql~i~S~~~~pi~~s~l~V~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~l~ 90 (554)
T PF07919_consen 11 FLEASVAFSQSEGKVGEPVQFQLSIRSNAPSPIRFSSLKVNFSGSLYPIVISHSDADASSADSSTSSGSPLSGSADLTLS 90 (554)
T ss_pred cEEEEEEEccCCccCCCeEEEEEEEEcCCCCCEEeeEEEEEeeCCCCCceEeccccccccccCcccccccccCccceEEe
Confidence 4555555553 256788899999999999999999998665422211111110 00000000 001123345667
Q ss_pred CCCeeeEEEEEeecCCCCCCCccc-cCceeeE----EEEEEEEcCCCCC---ceeeEEE-------E--------eeecC
Q 013597 267 GGGIHNYLYQLKMLSHGSSSPVKV-QGSNVLG----KLQITWRTNLGEP---GRLQTQQ-------I--------LGTTI 323 (439)
Q Consensus 267 ~gd~~q~lf~l~~~~~~~~~~~~~-~g~~~lG----kL~I~WRs~~Ge~---G~LqTs~-------l--------~~~~p 323 (439)
||....|-|.+.++.......... .-...+| .+.+.|+-..+.. ....++. + .+-.|
T Consensus 91 p~~~kv~~~~~~~~~~~~~g~~~i~sv~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~I~p 170 (554)
T PF07919_consen 91 PGQTKVFSFKFVPREQDVSGELEITSVTLQLGSDKFDLTLSWSFESSSSSSSFWWWQSSDGPKSRPIRKPRDQSSIRILP 170 (554)
T ss_pred ecceEEEEEEEeccccccCCcEEEEEEEEEEecCeEEEEEEeccccccccccccccccCCcceeeeccCCCCCCEEEEEC
Confidence 888888888887765211011111 1123455 3555676542221 1111110 0 11123
Q ss_pred ccCCeEEEEEecCceeEeCCcEEEEEEEEeCCCCCccc-EEEEEE--------eCCCCCcceEEEec-------ccceee
Q 013597 324 TSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGP-FEIWLS--------QNDSDEEKVVMING-------LRIMAL 387 (439)
Q Consensus 324 ~~~dl~l~v~~~P~~v~l~~pF~v~~~v~N~s~r~~~~-l~l~l~--------~~~~~~~~~~~~~G-------~s~~~L 387 (439)
....+++.+.+.-....++|.+.+.++|.|..++.... +.+.+- ...+......-|.+ .....+
T Consensus 171 ~pp~v~I~~~~~~~~~l~gE~~~i~i~I~n~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 250 (554)
T PF07919_consen 171 RPPKVSIKLPNHKPPALTGEFYPIPITISNNEDEEASGVLEVRLLHPSQLGVSSEETEDLSQVNWDSDKDDEPLFLGIPL 250 (554)
T ss_pred CCCCeEEEeCCCCCCeEcCCEEEEEEEEEcCCCccceeEEEEEEecccccccccccCccceecccccccccchhccCccc
Confidence 44556666644445678999999999999997766551 333333 01100111122333 335678
Q ss_pred cccCCCCeeEEEEEEEecccceEEeC
Q 013597 388 APVEAFGSTDFHLNLIATKLGVQRIT 413 (439)
Q Consensus 388 g~L~P~~s~~~~L~l~pl~~Glq~is 413 (439)
|.|.++++.+..+.+....+|-..|.
T Consensus 251 g~l~~~~s~~~~l~i~~~~~~~~~L~ 276 (554)
T PF07919_consen 251 GELAPGSSITVTLYIRTSRPGEYELS 276 (554)
T ss_pred ccCCCCCcEEEEEEEEeCCceeEEEE
Confidence 99999999999999887666666554
No 12
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.24 E-value=0.05 Score=43.24 Aligned_cols=72 Identities=22% Similarity=0.321 Sum_probs=45.6
Q ss_pred cceEEEEEEEEcCCCcceEEEEEEEEEeCCCeeEeccCCCCCCccccCCCCeeeEEEEEEccc---cCceEEEEEEEEE
Q 013597 100 GETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKE---LGAHTLVCTALYS 175 (439)
Q Consensus 100 GEtFs~~i~v~N~s~~~v~~V~ikaelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke---~G~h~L~c~VsY~ 175 (439)
||++...+.|.|.....++++.+.+++ |..+. . ......+..|+||++....+...+-+ .|.|.+.+.+.|+
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~--P~GW~-~-~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y~v~~~a~y~ 78 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSL--PEGWT-V-SASPASVPSLPPGESVTVTFTVTVPADAAPGTYTVTVTARYT 78 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE----TTSE-----EEEEE--B-TTSEEEEEEEEEE-TT--SEEEEEEEEEE--
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeC--CCCcc-c-cCCccccccCCCCCEEEEEEEEECCCCCCCceEEEEEEEEeC
Confidence 999999999999999999998888776 55443 1 11112344899999888777777744 5999999999995
No 13
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=94.86 E-value=0.31 Score=40.38 Aligned_cols=73 Identities=16% Similarity=0.299 Sum_probs=53.3
Q ss_pred cccceeecceEEEEEEEEcCCCcceEEEEEEEEEeC-CCeeEeccCCCCCCccccCCCCeeeEEEEEE-ccccCceEEEE
Q 013597 93 AFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQT-DKQRILLLDTSKSPVESIRAGGRYDFIVEHD-VKELGAHTLVC 170 (439)
Q Consensus 93 sfG~iylGEtFs~~i~v~N~s~~~v~~V~ikaelqT-~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~-lke~G~h~L~c 170 (439)
.||++.+|++.+..|.+.|.+..++ ++++.... .+..+.... .-+.|+||++.+.-|.+. -++.|.+.-..
T Consensus 12 dFG~v~~g~~~~~~v~l~N~s~~p~---~f~v~~~~~~~~~~~v~~----~~g~l~PG~~~~~~V~~~~~~~~g~~~~~l 84 (102)
T PF14874_consen 12 DFGNVFVGQTYSRTVTLTNTSSIPA---RFRVRQPESLSSFFSVEP----PSGFLAPGESVELEVTFSPTKPLGDYEGSL 84 (102)
T ss_pred EeeEEccCCEEEEEEEEEECCCCCE---EEEEEeCCcCCCCEEEEC----CCCEECCCCEEEEEEEEEeCCCCceEEEEE
Confidence 6999999999999999999998874 44444443 222333311 234799999999999999 88889875444
Q ss_pred EE
Q 013597 171 TA 172 (439)
Q Consensus 171 ~V 172 (439)
.|
T Consensus 85 ~i 86 (102)
T PF14874_consen 85 VI 86 (102)
T ss_pred EE
Confidence 44
No 14
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=93.38 E-value=0.28 Score=39.88 Aligned_cols=77 Identities=13% Similarity=0.204 Sum_probs=54.7
Q ss_pred cccceeecceEEEEEEEEcCCCcceEEEEEEEEEeCCCeeEeccCCCCCCccccCCCCeeeEEEEEEccccCceEEEEEE
Q 013597 93 AFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTA 172 (439)
Q Consensus 93 sfG~iylGEtFs~~i~v~N~s~~~v~~V~ikaelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L~c~V 172 (439)
+-+.++.|+.+...+.|.|.......++.++..+ ....+ . ...+..|+||++....+.+...+.|.|.+.+.|
T Consensus 11 ~~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~--~~~~~---~--~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~i 83 (101)
T PF07705_consen 11 SPSNVVPGEPVTITVTVKNNGTADAENVTVRLYL--DGNSV---S--TVTIPSLAPGESETVTFTWTPPSPGSYTIRVVI 83 (101)
T ss_dssp C-SEEETTSEEEEEEEEEE-SSS-BEEEEEEEEE--TTEEE---E--EEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEE
T ss_pred CCCcccCCCEEEEEEEEEECCCCCCCCEEEEEEE--CCcee---c--cEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEE
Confidence 3456889999999999999988888888777533 22222 1 123568999999999999999999999999988
Q ss_pred EEEc
Q 013597 173 LYSD 176 (439)
Q Consensus 173 sY~~ 176 (439)
.+..
T Consensus 84 D~~n 87 (101)
T PF07705_consen 84 DPDN 87 (101)
T ss_dssp STTT
T ss_pred eeCC
Confidence 6643
No 15
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=92.46 E-value=1.7 Score=40.58 Aligned_cols=81 Identities=9% Similarity=0.035 Sum_probs=62.7
Q ss_pred cCceeEeCCcEEEEEEEEeCCCCCcccEEEEEEeCCCCCcce-EEEecccceeecccCCCCeeEEEEEEEecccceEEeC
Q 013597 335 VPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKV-VMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRIT 413 (439)
Q Consensus 335 ~P~~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~-~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl~~Glq~is 413 (439)
++..+..++-++|++.|.|.-+.... .|.+..+.= .... -++.|.....+..|+||++..+.+.+-|...|...+.
T Consensus 30 l~~~~v~g~~v~V~~~iyN~G~~~A~--dV~l~D~~f-p~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~~G~f~~~ 106 (181)
T PF05753_consen 30 LNKYLVEGEDVTVTYTIYNVGSSAAY--DVKLTDDSF-PPEDFELVSGSLSASWERIPPGENVSHSYVVRPKKSGYFNFT 106 (181)
T ss_pred ccccccCCcEEEEEEEEEECCCCeEE--EEEEECCCC-CccccEeccCceEEEEEEECCCCeEEEEEEEeeeeeEEEEcc
Confidence 45667789999999999999555432 355544210 1123 3688988899999999999999999999999999999
Q ss_pred ceEEE
Q 013597 414 GITVF 418 (439)
Q Consensus 414 gI~l~ 418 (439)
.-.|.
T Consensus 107 ~a~Vt 111 (181)
T PF05753_consen 107 PAVVT 111 (181)
T ss_pred CEEEE
Confidence 97775
No 16
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=91.24 E-value=0.69 Score=36.61 Aligned_cols=59 Identities=10% Similarity=0.021 Sum_probs=34.2
Q ss_pred EeCCcEEEEEEEEeCCCCCcccEEEEEEeCCCCCcceEEEecccceeecccCCCCeeEEEEEEEe
Q 013597 340 GIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIA 404 (439)
Q Consensus 340 ~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~p 404 (439)
.-++++++++.|+|..+..+..+.++++--+ ++- ...+...++.|.||++.++.+.+-|
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~-----GW~-~~~~~~~~~~l~pG~s~~~~~~V~v 60 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLSLPE-----GWT-VSASPASVPSLPPGESVTVTFTVTV 60 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE--T-----TSE----EEEEE--B-TTSEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEeCCC-----Ccc-ccCCccccccCCCCCEEEEEEEEEC
Confidence 4578999999999996655444777776532 333 2333456669999999999998765
No 17
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=89.34 E-value=3.1 Score=38.80 Aligned_cols=82 Identities=21% Similarity=0.215 Sum_probs=63.0
Q ss_pred eecceEEEEEEEEcCCCcceEEEEEEEEEeCCCeeEeccCCC-CCCccccCCCCeeeEEEEEEccccCceEE-EEEEEEE
Q 013597 98 YLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTS-KSPVESIRAGGRYDFIVEHDVKELGAHTL-VCTALYS 175 (439)
Q Consensus 98 ylGEtFs~~i~v~N~s~~~v~~V~ikaelqT~s~r~~L~~~~-~~~~~~L~pg~~ld~iv~~~lke~G~h~L-~c~VsY~ 175 (439)
-.|+.....+.+-|.-+.++.||.|.-+= -++....|.... ......|.||+++.-++.-.=+..|.|.+ ...|+|+
T Consensus 35 v~g~~v~V~~~iyN~G~~~A~dV~l~D~~-fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~~G~f~~~~a~VtY~ 113 (181)
T PF05753_consen 35 VEGEDVTVTYTIYNVGSSAAYDVKLTDDS-FPPEDFELVSGSLSASWERIPPGENVSHSYVVRPKKSGYFNFTPAVVTYR 113 (181)
T ss_pred cCCcEEEEEEEEEECCCCeEEEEEEECCC-CCccccEeccCceEEEEEEECCCCeEEEEEEEeeeeeEEEEccCEEEEEE
Confidence 45999999999999999999999998721 133444443221 12356899999998888888899999988 6779999
Q ss_pred cCCCc
Q 013597 176 DGEGE 180 (439)
Q Consensus 176 ~~~Ge 180 (439)
...|.
T Consensus 114 ~~~~~ 118 (181)
T PF05753_consen 114 DSEGA 118 (181)
T ss_pred CCCCC
Confidence 87663
No 18
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=87.44 E-value=4.7 Score=35.83 Aligned_cols=93 Identities=13% Similarity=0.181 Sum_probs=68.8
Q ss_pred cceeecc---eEEEEEEEEcCCCcceEEEEEEEEEeCCCeeEeccCCCCCCccccCCCCeeeEEEEEE--ccccCceEEE
Q 013597 95 GAIYLGE---TFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHD--VKELGAHTLV 169 (439)
Q Consensus 95 G~iylGE---tFs~~i~v~N~s~~~v~~V~ikaelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~--lke~G~h~L~ 169 (439)
+++-+|+ .....+.+.|....-+.++.+++++.-..+.-.+.... .....++|+..+++-|..+ -=..|.|+|.
T Consensus 33 ~~v~~~~~n~~~~i~~~l~N~~~~~l~~~~v~a~V~~~~~~k~~~~~~-~~~~~mAPNS~f~~~i~~~~~~lk~G~Y~l~ 111 (140)
T PF11797_consen 33 GKVKPGQINGRNVIQANLQNPQPAILKKLTVDAKVTKKGSKKVLYTFK-KENMQMAPNSNFNFPIPLGGKKLKPGKYTLK 111 (140)
T ss_pred eeeeeeEECCeeEEEEEEECCCchhhcCcEEEEEEEECCCCeEEEEee-ccCCEECCCCeEEeEecCCCcCccCCEEEEE
Confidence 4444444 66677889999999999999999999988754443322 2245799999999988885 4456999999
Q ss_pred EEEEEEcCCCceeeeceEEEEE
Q 013597 170 CTALYSDGEGERKYLPQFFKFI 191 (439)
Q Consensus 170 c~VsY~~~~Ge~~~frK~fkF~ 191 (439)
.++.+.. +...|.|-|+..
T Consensus 112 ~~~~~~~---~~W~f~k~F~It 130 (140)
T PF11797_consen 112 ITAKSGK---KTWTFTKDFTIT 130 (140)
T ss_pred EEEEcCC---cEEEEEEEEEEC
Confidence 9987643 356777766653
No 19
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=86.25 E-value=12 Score=30.72 Aligned_cols=74 Identities=14% Similarity=0.151 Sum_probs=58.9
Q ss_pred cceEEEEEEEEcCCCcceEEEEEEEEEeCCCeeEeccCCCCCCccccCCCCeeeEEEEEEccccCceEEEEEEEEEcC
Q 013597 100 GETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDG 177 (439)
Q Consensus 100 GEtFs~~i~v~N~s~~~v~~V~ikaelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L~c~VsY~~~ 177 (439)
+...+..+.+.|.+..++++..+.+-. .....+.+...+ ...|.||+.+...+.......+.-.+.+.|+|..+
T Consensus 17 ~~~~~i~~~~~N~s~~~it~f~~~~av-pk~~~l~l~~~s---~~~l~p~~~i~q~~~i~~~~~~~~~~~~~vsy~~~ 90 (104)
T smart00809 17 PGLIRITLTFTNKSPSPITNFSFQAAV-PKSLKLQLQPPS---SPTLPPGGQITQVLKVENPGKFPLRLRLRLSYLLG 90 (104)
T ss_pred CCeEEEEEEEEeCCCCeeeeEEEEEEc-ccceEEEEcCCC---CCccCCCCCEEEEEEEECCCCCCEEEEEEEEEEEC
Confidence 445678888999999999999998863 445666664322 24689999999999999988888999999999986
No 20
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=84.86 E-value=6.9 Score=32.14 Aligned_cols=66 Identities=12% Similarity=0.126 Sum_probs=48.1
Q ss_pred eeEeCCcEEEEEEEEeCCCCCcccEEEEEEeCCCCCcceEEEecccceeecccCCCCeeEEEEEEE-ecccceEE
Q 013597 338 VVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLI-ATKLGVQR 411 (439)
Q Consensus 338 ~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~-pl~~Glq~ 411 (439)
.+.+++....++.|+|.+..... +.++..... ...|.+.-. =|.|.||.+.++.+.+. +-..|...
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~p~~-f~v~~~~~~---~~~~~v~~~----~g~l~PG~~~~~~V~~~~~~~~g~~~ 81 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSIPAR-FRVRQPESL---SSFFSVEPP----SGFLAPGESVELEVTFSPTKPLGDYE 81 (102)
T ss_pred EEccCCEEEEEEEEEECCCCCEE-EEEEeCCcC---CCCEEEECC----CCEECCCCEEEEEEEEEeCCCCceEE
Confidence 46789999999999999998876 666553311 234555432 35789999999999999 55567654
No 21
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=84.25 E-value=22 Score=29.87 Aligned_cols=75 Identities=11% Similarity=0.113 Sum_probs=54.8
Q ss_pred ecceEEEEEEEEcCCCcceEEEEEEEEEeCCCeeEeccCCCCCCccccCCCCeeeEEEEEEc-----cccCceEEEEEEE
Q 013597 99 LGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDV-----KELGAHTLVCTAL 173 (439)
Q Consensus 99 lGEtFs~~i~v~N~s~~~v~~V~ikaelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~l-----ke~G~h~L~c~Vs 173 (439)
=+...+..+.+.|.+..+++++.+.+..- .+..+.|... +...|.|++.+.-.+..+. .....-.+.+.|+
T Consensus 22 ~~~~~~i~~~f~N~s~~~it~f~~q~avp-k~~~l~l~~~---s~~~i~p~~~i~Q~~~v~~~~~~~~~~~~l~~~~~vs 97 (115)
T PF02883_consen 22 NPNQGRIKLTFGNKSSQPITNFSFQAAVP-KSFKLQLQPP---SSSTIPPGQQITQVIKVENSPFSEPTPKPLKPRLRVS 97 (115)
T ss_dssp ETTEEEEEEEEEE-SSS-BEEEEEEEEEB-TTSEEEEEES---S-SSB-TTTEEEEEEEEEESS-BSTTSSTTEEEEEEE
T ss_pred CCCEEEEEEEEEECCCCCcceEEEEEEec-cccEEEEeCC---CCCeeCCCCeEEEEEEEEEeecccCCCCCcCeEEEEE
Confidence 46677888999999999999999998766 6666666432 2346889999999999999 2222338999999
Q ss_pred EEcC
Q 013597 174 YSDG 177 (439)
Q Consensus 174 Y~~~ 177 (439)
|...
T Consensus 98 y~~~ 101 (115)
T PF02883_consen 98 YNVG 101 (115)
T ss_dssp EEET
T ss_pred EEEC
Confidence 9985
No 22
>PF00207 A2M: Alpha-2-macroglobulin family; InterPro: IPR001599 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0004866 endopeptidase inhibitor activity; PDB: 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 2PN5_A 3FRP_G 3HRZ_B ....
Probab=82.84 E-value=5.5 Score=32.47 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=29.2
Q ss_pred CccCCeEEEEEecCceeEeCCcEEEEEEEEeCCCCCcccEEEEE
Q 013597 323 ITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWL 366 (439)
Q Consensus 323 p~~~dl~l~v~~~P~~v~l~~pF~v~~~v~N~s~r~~~~l~l~l 366 (439)
-..+++-+.+ ++|..++.++.+.+.+.|.|+.+..++ ++|.|
T Consensus 51 ~v~~p~~i~~-~lP~~l~~GD~~~i~v~v~N~~~~~~~-v~V~l 92 (92)
T PF00207_consen 51 TVFKPFFIQL-NLPRSLRRGDQIQIPVTVFNYTDKDQE-VTVTL 92 (92)
T ss_dssp EEB-SEEEEE-E--SEEETTSEEEEEEEEEE-SSS-EE-EEEEE
T ss_pred EEEeeEEEEc-CCCcEEecCCEEEEEEEEEeCCCCCEE-EEEEC
Confidence 3455664443 899999999999999999999999877 66654
No 23
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=81.43 E-value=1.9 Score=36.16 Aligned_cols=75 Identities=19% Similarity=0.219 Sum_probs=48.4
Q ss_pred cceeecceEEEEEEEEcCCCcceEEEEEEEEEeCC----CeeEeccCCCCCCccccCCCCeeeEEEEEEccccCceEEEE
Q 013597 95 GAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTD----KQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVC 170 (439)
Q Consensus 95 G~iylGEtFs~~i~v~N~s~~~v~~V~ikaelqT~----s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L~c 170 (439)
|.+.+|+.|.+.+.+.|.++..+++|.+....++- -.+-.... .....+|+||+.....+...=++-|..-+.+
T Consensus 9 ~~~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~--~~~~~~l~p~~~~~~~~~i~p~~yG~~~~l~ 86 (107)
T PF00927_consen 9 GDPVVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKK--EKFEVTLKPGETKSVEVTITPSQYGPKQLLV 86 (107)
T ss_dssp SEEBTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEE--EEEEEEE-TTEEEEEEEEE-HHSHEEECCEE
T ss_pred CCccCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeE--EEcceeeCCCCEEEEEEEEEceeEecchhcc
Confidence 56789999999999999999999998887755543 11111111 1224578899988777777777777654444
Q ss_pred E
Q 013597 171 T 171 (439)
Q Consensus 171 ~ 171 (439)
.
T Consensus 87 ~ 87 (107)
T PF00927_consen 87 D 87 (107)
T ss_dssp E
T ss_pred h
Confidence 3
No 24
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=71.33 E-value=27 Score=34.15 Aligned_cols=76 Identities=16% Similarity=0.140 Sum_probs=52.2
Q ss_pred eEeCCcEEEEEEEEeCCCCCcccEEEEEEeCCCCC--cceEEEecccceeecccCCCCeeEEEEEEEecccceEEeCc
Q 013597 339 VGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDE--EKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITG 414 (439)
Q Consensus 339 v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~--~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl~~Glq~isg 414 (439)
+.|++.|...+.+.|.++..+..+.|.++---... .-.+.-.+........|.||++.++.+..-=-..|.|.+.-
T Consensus 10 iylGEtF~~~l~~~N~s~~~v~~v~ikvemqT~s~~~r~~L~~~~~~~~~~~~L~p~~~l~~iv~~~lkE~G~h~L~c 87 (249)
T PF06159_consen 10 IYLGETFSCYLSVNNDSNKPVRNVRIKVEMQTPSQSLRLPLSDNENSDSPVASLAPGESLDFIVSHELKELGNHTLVC 87 (249)
T ss_pred EeecCCEEEEEEeecCCCCceEEeEEEEEEeCCCCCccccCCCCccccccccccCCCCeEeEEEEEEeeecCceEEEE
Confidence 78999999999999998877755666665422101 01122222222346789999999998887777889988854
No 25
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=69.93 E-value=13 Score=30.66 Aligned_cols=56 Identities=16% Similarity=0.191 Sum_probs=35.9
Q ss_pred CCcEEEEEEEEeCCCCCcccEEEEEEeCCCCCcceEEEecccceeecccCCCCeeEEEEEEEeccc
Q 013597 342 DKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKL 407 (439)
Q Consensus 342 ~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl~~ 407 (439)
++.-...+.|+|.++..+. ..++.+. ...+.+. + ..|.|+||++..+.+++.|...
T Consensus 17 ~~~~~~~l~l~N~s~~~i~---fKiktt~---~~~y~v~-P---~~G~i~p~~~~~i~I~~~~~~~ 72 (109)
T PF00635_consen 17 NKQQSCELTLTNPSDKPIA---FKIKTTN---PNRYRVK-P---SYGIIEPGESVEITITFQPFDF 72 (109)
T ss_dssp SS-EEEEEEEEE-SSSEEE---EEEEES----TTTEEEE-S---SEEEE-TTEEEEEEEEE-SSST
T ss_pred CceEEEEEEEECCCCCcEE---EEEEcCC---CceEEec-C---CCEEECCCCEEEEEEEEEeccc
Confidence 3456889999999988654 4454432 1245544 3 3788999999999999998443
No 26
>KOG3865 consensus Arrestin [Signal transduction mechanisms]
Probab=68.50 E-value=17 Score=36.74 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=26.1
Q ss_pred eecceEEEEEEEEcCCCcceEEEEEEEEE
Q 013597 98 YLGETFCSYISINNSSTLEVRDVVIKAEI 126 (439)
Q Consensus 98 ylGEtFs~~i~v~N~s~~~v~~V~ikael 126 (439)
|=||..+..++|.|+|+..|+.+.+.+.=
T Consensus 207 yHGE~isvnV~V~NNsnKtVKkIK~~V~Q 235 (402)
T KOG3865|consen 207 YHGEPISVNVHVTNNSNKTVKKIKISVRQ 235 (402)
T ss_pred ecCCceeEEEEEecCCcceeeeeEEEeEe
Confidence 78999999999999999999998877643
No 27
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=67.90 E-value=25 Score=30.53 Aligned_cols=60 Identities=13% Similarity=0.203 Sum_probs=34.5
Q ss_pred CCcEEEEEEEEeCCCCCcccEEEEEEeCCCCCcceEEEeccccee-------e---------cccCCCCeeEEEEEE
Q 013597 342 DKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMA-------L---------APVEAFGSTDFHLNL 402 (439)
Q Consensus 342 ~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~-------L---------g~L~P~~s~~~~L~l 402 (439)
++.-+++++|.|++++.+. +.+.+.+--+.....|-|....... + =.|+|+++..+.+++
T Consensus 26 ~q~~~l~v~i~N~s~~~~t-v~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~~~~sk~V~~~i 101 (121)
T PF06030_consen 26 GQKQTLEVRITNNSDKEIT-VKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLPPNESKTVTFTI 101 (121)
T ss_pred CCEEEEEEEEEeCCCCCEE-EEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEECCCCEEEEEEEE
Confidence 4556677777777777666 6666655433323334443322110 0 157899999988875
No 28
>KOG3865 consensus Arrestin [Signal transduction mechanisms]
Probab=62.96 E-value=43 Score=34.00 Aligned_cols=89 Identities=13% Similarity=0.162 Sum_probs=62.3
Q ss_pred cCCeEEEEEecCceeEeCCcEEEEEEEEeCCCCCcccEEEEEEeCCCCCcceEEEeccccee---------ecccCCCCe
Q 013597 325 SKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMA---------LAPVEAFGS 395 (439)
Q Consensus 325 ~~dl~l~v~~~P~~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~---------Lg~L~P~~s 395 (439)
.+.|.|.+.==-....=++|..+++.|+|+|+++...+.+.+++- ++-++++.-+-.. -=.+.||++
T Consensus 192 ~~~lhLevsLDkEiYyHGE~isvnV~V~NNsnKtVKkIK~~V~Q~----adi~Lfs~aqy~~~VA~~E~~eGc~v~Pgst 267 (402)
T KOG3865|consen 192 DGPLHLEVSLDKEIYYHGEPISVNVHVTNNSNKTVKKIKISVRQV----ADICLFSTAQYKKPVAMEETDEGCPVAPGST 267 (402)
T ss_pred CCceEEEEEecchheecCCceeEEEEEecCCcceeeeeEEEeEee----ceEEEEecccccceeeeeecccCCccCCCCe
Confidence 344444443223456788999999999999999888788888774 2345553322111 115789999
Q ss_pred eEEEEEEEecccceEEeCceEE
Q 013597 396 TDFHLNLIATKLGVQRITGITV 417 (439)
Q Consensus 396 ~~~~L~l~pl~~Glq~isgI~l 417 (439)
.+=.++++|+..--..=.||.|
T Consensus 268 l~Kvf~l~PllanN~dkrGlAL 289 (402)
T KOG3865|consen 268 LSKVFTLTPLLANNKDKRGLAL 289 (402)
T ss_pred eeeeEEechhhhcCcccccccc
Confidence 9999999999887777777665
No 29
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=60.85 E-value=58 Score=27.67 Aligned_cols=95 Identities=18% Similarity=0.207 Sum_probs=55.7
Q ss_pred ceeecceEEEEEEEEcCCCcceEEEEEEEEEeCCCeeEec-cCC--CCCCccccCCCCeeeEEEEEEc-cccCceEEEEE
Q 013597 96 AIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILL-LDT--SKSPVESIRAGGRYDFIVEHDV-KELGAHTLVCT 171 (439)
Q Consensus 96 ~iylGEtFs~~i~v~N~s~~~v~~V~ikaelqT~s~r~~L-~~~--~~~~~~~L~pg~~ld~iv~~~l-ke~G~h~L~c~ 171 (439)
.+..||++...|.++. ..++.++.+-..+.+....... .++ ...++...+ ++.....+..+. =..|.|.+.+.
T Consensus 30 ~~~~ge~~~i~i~~~~--~~~i~~~~~~~~i~~~~g~~v~~~~t~~~~~~~~~~~-~g~~~~~~~i~~~L~~G~Y~i~v~ 106 (142)
T PF14524_consen 30 SFESGEPIRIRIDYEV--NEDIDDPVFGFAIRDSDGQRVFGTNTYDSGFPIPLSE-GGTYEVTFTIPKPLNPGEYSISVG 106 (142)
T ss_dssp SEETTSEEEEEEEEEE--SS-EEEEEEEEEEEETT--EEEEEEHHHHT--EEE-T-T-EEEEEEEEE--B-SEEEEEEEE
T ss_pred EEeCCCEEEEEEEEEE--CCCCCccEEEEEEEcCCCCEEEEECccccCccccccC-CCEEEEEEEEcCccCCCeEEEEEE
Confidence 3788999999999987 6778888888888887653222 111 112233333 665555555554 44599999999
Q ss_pred EEEEcCCCceeee--ceEEEEEeec
Q 013597 172 ALYSDGEGERKYL--PQFFKFIVSN 194 (439)
Q Consensus 172 VsY~~~~Ge~~~f--rK~fkF~v~~ 194 (439)
+.+ ...+..... .+.+.|.|..
T Consensus 107 l~~-~~~~~~~~d~~~~~~~f~V~~ 130 (142)
T PF14524_consen 107 LGD-DSSGGEVLDWIEDALSFEVED 130 (142)
T ss_dssp EEE-TTTEEEEEEEEEEEEEEEEE-
T ss_pred EEe-cCCCCEEEEEECCEEEEEEEC
Confidence 944 333333333 4578888876
No 30
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=60.79 E-value=22 Score=32.06 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=36.3
Q ss_pred EEEEEEEEeCCCCCcccEEEEEEeCCCCCcceEEEecccceeecccCCCCeeEEEE
Q 013597 345 FLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHL 400 (439)
Q Consensus 345 F~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L 400 (439)
..|.+.++|+++..+. .|++..+. ...+.-+.+ .-.++.|+||++.+..+
T Consensus 87 vsIql~ftN~s~~~i~--~I~i~~k~--l~~g~~i~~--F~~I~~L~pg~s~t~~l 136 (145)
T PF14796_consen 87 VSIQLTFTNNSDEPIK--NIHIGEKK--LPAGMRIHE--FPEIESLEPGASVTVSL 136 (145)
T ss_pred EEEEEEEEecCCCeec--ceEECCCC--CCCCcEeec--cCcccccCCCCeEEEEE
Confidence 3477889999999886 56665543 234666666 34688999999988877
No 31
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=60.58 E-value=29 Score=29.45 Aligned_cols=73 Identities=22% Similarity=0.216 Sum_probs=36.7
Q ss_pred ccCCeEEEEEecCceeEeCCc-----EEEEEEEEeCCCCCcccEEEEEEeCCCCCcceEEEec-ccceeecccCCCCeeE
Q 013597 324 TSKEIELNVVEVPSVVGIDKP-----FLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMING-LRIMALAPVEAFGSTD 397 (439)
Q Consensus 324 ~~~dl~l~v~~~P~~v~l~~p-----F~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G-~s~~~Lg~L~P~~s~~ 397 (439)
..+++++.|..-+.....+.. =..+++|.|.++..+. +.|.++.. +++-|.+ ...+ .|+||++..
T Consensus 7 ~R~~~~~~V~rdr~~ly~~~~dg~I~N~Y~lkl~Nkt~~~~~-~~i~~~g~-----~~~~l~~~~~~i---~v~~g~~~~ 77 (118)
T PF11614_consen 7 TRKPVELNVLRDRGPLYRELSDGSIRNQYTLKLTNKTNQPRT-YTISVEGL-----PGAELQGPENTI---TVPPGETRE 77 (118)
T ss_dssp ---SEEEEEEE-SS---------SEEEEEEEEEEE-SSS-EE-EEEEEES------SS-EE-ES--EE---EE-TT-EEE
T ss_pred ccCcEEEEEEecCCCcEEEcCCCeEEEEEEEEEEECCCCCEE-EEEEEecC-----CCeEEECCCcce---EECCCCEEE
Confidence 345666666654443222111 1267889999999887 88888763 2677744 3333 469999999
Q ss_pred EEEEEEec
Q 013597 398 FHLNLIAT 405 (439)
Q Consensus 398 ~~L~l~pl 405 (439)
+.+.+..-
T Consensus 78 ~~v~v~~p 85 (118)
T PF11614_consen 78 VPVFVTAP 85 (118)
T ss_dssp EEEEEEE-
T ss_pred EEEEEEEC
Confidence 88876543
No 32
>COG2847 Copper(I)-binding protein [Inorganic ion transport and metabolism]
Probab=60.37 E-value=74 Score=28.86 Aligned_cols=103 Identities=26% Similarity=0.347 Sum_probs=64.4
Q ss_pred cccccceeecceE-----------EEEEEEEcCCCcceEEEEEEEEEeCCCeeEeccCCC---------CCCccccCCCC
Q 013597 91 PQAFGAIYLGETF-----------CSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTS---------KSPVESIRAGG 150 (439)
Q Consensus 91 P~sfG~iylGEtF-----------s~~i~v~N~s~~~v~~V~ikaelqT~s~r~~L~~~~---------~~~~~~L~pg~ 150 (439)
...++.|++...+ .+|+.+.|.++.+++-|.++.+. ..|+.|+++. +.+.-.|.+|+
T Consensus 20 ~~~~~~i~v~~a~~ra~~pg~~~~a~~~ti~N~~~~~~~Lv~v~s~~---a~~~ElHe~i~~~gvmkMr~v~~i~Ipa~~ 96 (151)
T COG2847 20 AVAAAAIHVEDAWARATPPGAKMGAAFMTITNNGDKDDRLVGVSSPI---AARAELHETIHDGGVMKMRKVPGIVIPAGG 96 (151)
T ss_pred ccccCceEEeccEEEecCCCCcceeEEEEEeCCCCCCceEEEEecCc---cceeEEEEEEecCCeEEEEEcCcEEECCCc
Confidence 3455555555544 38999999999999988777654 4555554431 11233577888
Q ss_pred eeeEEEEEEccccCceEEEEEEEEEcCCCceeeeceEEEEEeecCeEEEEEEEE
Q 013597 151 RYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQFFKFIVSNPLSVRTKVRV 204 (439)
Q Consensus 151 ~ld~iv~~~lke~G~h~L~c~VsY~~~~Ge~~~frK~fkF~v~~Pl~VktK~~~ 204 (439)
+++ +|-=|-|++.-.+.=-...|+ .|..-++|+......|+.++..
T Consensus 97 ~v~------lkpGgyHvMlm~lK~pl~eGd--~v~vtL~f~~~~~~~v~~~v~~ 142 (151)
T COG2847 97 TVE------LKPGGYHVMLMGLKKPLKEGD--KVPVTLKFEKAGKVTVEAPVKK 142 (151)
T ss_pred eEE------ecCCCEEEEEeccCCCccCCC--EEEEEEEEecCCeEEEEEEEec
Confidence 774 788899999866533333444 3455566666666555555543
No 33
>COG1361 S-layer domain [Cell envelope biogenesis, outer membrane]
Probab=59.63 E-value=2.5e+02 Score=30.05 Aligned_cols=147 Identities=17% Similarity=0.123 Sum_probs=93.1
Q ss_pred cccccccccceeecceEEEEEEEEcCCCcceEEEEEEEEEeCCCe-eEeccCCC-CCCccccCCCCeeeEEEEEEcc---
Q 013597 87 LLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQ-RILLLDTS-KSPVESIRAGGRYDFIVEHDVK--- 161 (439)
Q Consensus 87 ~L~LP~sfG~iylGEtFs~~i~v~N~s~~~v~~V~ikaelqT~s~-r~~L~~~~-~~~~~~L~pg~~ld~iv~~~lk--- 161 (439)
.....++-..++-||++...+.+.|..+..++++.+..+- +.. ........ ..-++.|.||++..........
T Consensus 153 ~~~v~~~~~~i~~G~~~~l~~~I~N~G~~~~~~v~l~~~~--~~~~~~~i~~~~~~~~i~~l~p~es~~v~f~v~~~~~a 230 (500)
T COG1361 153 SFEVVSSPEAIIPGETNTLTLTIKNPGEGPAKNVSLSLES--PTSYLGPIYSANDTPYIGALGPGESVNVTFSVYAGSNA 230 (500)
T ss_pred eeEEecCccccCCCCccEEEEEEEeCCcccccceEEEEeC--CcceeccccccccceeeeeeCCCceEEEEEEEEeecCC
Confidence 3555666778899999999999999999999999888864 111 11111111 1236789999999988888888
Q ss_pred ccCceEEEEEEEEEcCCCceeeeceEEEEEeec---CeEEEEEEEE---e-CCceEEEEEEEecccccEEEEeEEeeecC
Q 013597 162 ELGAHTLVCTALYSDGEGERKYLPQFFKFIVSN---PLSVRTKVRV---V-KEITFLEACIENHTKSNLYMDQVEFEPSQ 234 (439)
Q Consensus 162 e~G~h~L~c~VsY~~~~Ge~~~frK~fkF~v~~---Pl~VktK~~~---~-~~~~~LEaqiqN~s~~~l~le~v~Lep~~ 234 (439)
+.|.|.+-..++|.+..+.++. ..-+.|.... .|++..--.. . .....++..+.|....+.-...+.+....
T Consensus 231 ~~g~y~i~i~i~~~~~~~~~~~-~~~~~~i~~~~~~~~~is~v~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~ 309 (500)
T COG1361 231 EPGTYTINLEITYKDEEGSVKS-PTITIGIVVVGEPKLDISNVKFDPGVIPLGGVSIEITITIENSGSAPNQTVRLVTGS 309 (500)
T ss_pred CCccEEEEEEEEEecCCccccc-cceEEEEecCCceeEEEEEEEecCCeeccceeEEEEEEEEEecccccceEEEEEecC
Confidence 6999999999999996554332 2233333332 3333322111 1 23466666666665544444555554444
Q ss_pred Cc
Q 013597 235 NW 236 (439)
Q Consensus 235 ~~ 236 (439)
.+
T Consensus 310 ~~ 311 (500)
T COG1361 310 PF 311 (500)
T ss_pred Cc
Confidence 33
No 34
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=59.00 E-value=1.3e+02 Score=30.21 Aligned_cols=92 Identities=16% Similarity=0.226 Sum_probs=70.4
Q ss_pred cccccccccceeecceEEEEEEEEcCCCcceEEEEEEEEEeCCCee---E-eccCCCCCCccccCCCCeeeEEEEEEccc
Q 013597 87 LLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQR---I-LLLDTSKSPVESIRAGGRYDFIVEHDVKE 162 (439)
Q Consensus 87 ~L~LP~sfG~iylGEtFs~~i~v~N~s~~~v~~V~ikaelqT~s~r---~-~L~~~~~~~~~~L~pg~~ld~iv~~~lke 162 (439)
....|...-.+.-|+.-.+.|.+.|....++.-..|.+-+..+... + ++.-. .-...+.||+...+-..|-..+
T Consensus 85 ~~~F~~~~~~l~aG~~~~~LvgftN~g~~~~~V~~i~aSl~~p~d~~~~iqNfTa~--~y~~~V~pg~~aT~~YsF~~~~ 162 (285)
T PF03896_consen 85 TILFPKPTKKLPAGEPVKFLVGFTNKGSEPFTVESIEASLRYPQDYSYYIQNFTAV--RYNREVPPGEEATFPYSFTPSE 162 (285)
T ss_pred EEEeccccccccCCCeEEEEEEEEeCCCCCEEEEEEeeeecCccccceEEEeeccc--ccCcccCCCCeEEEEEEEecch
Confidence 3555656677899999999999999999999999999999888532 1 22211 1124689999988888887743
Q ss_pred ---cCceEEEEEEEEEcCCCc
Q 013597 163 ---LGAHTLVCTALYSDGEGE 180 (439)
Q Consensus 163 ---~G~h~L~c~VsY~~~~Ge 180 (439)
.+.+-|+..+.|.+.+|.
T Consensus 163 ~l~pr~f~L~i~l~y~d~~g~ 183 (285)
T PF03896_consen 163 ELAPRPFGLVINLIYEDSDGN 183 (285)
T ss_pred hcCCcceEEEEEEEEEeCCCC
Confidence 466899999999988885
No 35
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=57.12 E-value=25 Score=24.60 Aligned_cols=34 Identities=26% Similarity=0.252 Sum_probs=28.1
Q ss_pred EccccCceEEEEEEEEEcCCCceeeeceEEEEEe
Q 013597 159 DVKELGAHTLVCTALYSDGEGERKYLPQFFKFIV 192 (439)
Q Consensus 159 ~lke~G~h~L~c~VsY~~~~Ge~~~frK~fkF~v 192 (439)
-..++|.|.|...++-+..+|+..+=..-|.|.|
T Consensus 8 ~FT~PG~Y~l~~~a~~~~~~G~~~s~~~t~tf~V 41 (41)
T TIGR03769 8 VFTKPGTYTLTVQATATLTDGKVSSDPQTLTFAV 41 (41)
T ss_pred eeCCCeEEEEEEEEEEEeCCCcEecCCEEEEEEC
Confidence 3568999999999998888898666677888875
No 36
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=55.71 E-value=20 Score=27.85 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=28.4
Q ss_pred ccceeecceEEEEEEEEcCCCcceEEEEEEEEE
Q 013597 94 FGAIYLGETFCSYISINNSSTLEVRDVVIKAEI 126 (439)
Q Consensus 94 fG~iylGEtFs~~i~v~N~s~~~v~~V~ikael 126 (439)
-..++.||++.-.|.+.|..+..+.+|.|+=-|
T Consensus 34 ~~~~~~Gd~v~ytitvtN~G~~~a~nv~v~D~l 66 (76)
T PF01345_consen 34 PSTANPGDTVTYTITVTNTGPAPATNVVVTDTL 66 (76)
T ss_pred CCcccCCCEEEEEEEEEECCCCeeEeEEEEEcC
Confidence 345899999999999999999999999887544
No 37
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=54.94 E-value=35 Score=30.72 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=54.0
Q ss_pred CCCccCCCccccccccccceeecceEEEEEEEEcCCCcceEEEEEEEEEeCCCeeEeccCCCCCCccccCCCCeeeEEEE
Q 013597 78 SADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVE 157 (439)
Q Consensus 78 ~~~~~~~~~~L~LP~sfG~iylGEtFs~~i~v~N~s~~~v~~V~ikaelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~ 157 (439)
....-||+=....+.+-- +|-.-+-+--|.+.|+++.++++|.|.-.=.....++.- ..+++.|+||+++..++.
T Consensus 63 ~v~G~GL~v~Y~F~RqP~-~~s~~mvsIql~ftN~s~~~i~~I~i~~k~l~~g~~i~~----F~~I~~L~pg~s~t~~lg 137 (145)
T PF14796_consen 63 RVNGKGLSVEYRFSRQPS-LYSPSMVSIQLTFTNNSDEPIKNIHIGEKKLPAGMRIHE----FPEIESLEPGASVTVSLG 137 (145)
T ss_pred ccCCCceeEEEEEccCCc-CCCCCcEEEEEEEEecCCCeecceEECCCCCCCCcEeec----cCcccccCCCCeEEEEEE
Confidence 444555555555554321 455666778899999999999999887643233333322 356889999999998888
Q ss_pred EEccc
Q 013597 158 HDVKE 162 (439)
Q Consensus 158 ~~lke 162 (439)
.+..+
T Consensus 138 IDF~D 142 (145)
T PF14796_consen 138 IDFND 142 (145)
T ss_pred Eeccc
Confidence 77654
No 38
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=53.79 E-value=88 Score=27.68 Aligned_cols=61 Identities=16% Similarity=0.315 Sum_probs=41.9
Q ss_pred ecceEEEEEEEEcCCCcceEEEEEEEEEeCCCeeE---ec--cCCC------CCCcc-ccCCCCeeeEEEEEE
Q 013597 99 LGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRI---LL--LDTS------KSPVE-SIRAGGRYDFIVEHD 159 (439)
Q Consensus 99 lGEtFs~~i~v~N~s~~~v~~V~ikaelqT~s~r~---~L--~~~~------~~~~~-~L~pg~~ld~iv~~~ 159 (439)
.+|.|.....|.|.++.+++++.+.+++....+.. .. .... ..++. .|.||++-++.+.++
T Consensus 60 ~~~~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~~~~n~~~~~~~~~~~f~~~~~~i~~~L~~~e~~~f~~~~~ 132 (149)
T PF09624_consen 60 YSESFYVDGTVTNTGKFTIKKCKITVKLYNDKQVSGNKFKEIFYQQIPFVKKSIPIADNLKPGESKEFRFIFP 132 (149)
T ss_pred eccEEEEEEEEEECCCCEeeEEEEEEEEEeCCCccCchhhhhhccccchhccceeHHhhcCcccceeEEEEec
Confidence 48999999999999999999999999997643211 00 0000 01222 288999888766654
No 39
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=51.89 E-value=76 Score=38.09 Aligned_cols=73 Identities=18% Similarity=0.256 Sum_probs=50.9
Q ss_pred cCceeEeCCcEEEEEEEEeCCCCCcccEEEEEEeCCCCCcceEEEecccc----eeecccCCCCeeEEEEEEEecccceE
Q 013597 335 VPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRI----MALAPVEAFGSTDFHLNLIATKLGVQ 410 (439)
Q Consensus 335 ~P~~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~----~~Lg~L~P~~s~~~~L~l~pl~~Glq 410 (439)
.+....++++..|.|++.|--. ++|.++.= .+.+.|... ..+-.+.|.....+.|...|...|--
T Consensus 643 ~~~~~V~gE~~~v~VtLqNPf~-----fel~I~~I------~L~~egv~fes~~~s~~l~~p~s~~~v~L~g~P~~~G~L 711 (1185)
T PF08626_consen 643 KEPLWVVGEPAEVKVTLQNPFK-----FELEISSI------SLSTEGVPFESYPVSIVLLPPNSTQTVRLSGTPLETGTL 711 (1185)
T ss_pred cCccEEcCCeEEEEEEEECCcc-----ceEEEEEE------EEEEcCCccccceeeeEecCCCcceEEEEEEEECccceE
Confidence 4556789999999999999622 33444321 233444321 12322499999999999999999999
Q ss_pred EeCceEEE
Q 013597 411 RITGITVF 418 (439)
Q Consensus 411 ~isgI~l~ 418 (439)
.|.|+.+.
T Consensus 712 ~I~G~~i~ 719 (1185)
T PF08626_consen 712 KITGCIIK 719 (1185)
T ss_pred EEEEEEEE
Confidence 99996663
No 40
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=50.63 E-value=97 Score=25.93 Aligned_cols=78 Identities=17% Similarity=0.144 Sum_probs=40.3
Q ss_pred eCCcEEEEEEEEeCCCCCcccEEEEEEeC---CCC--CcceE-E-------EecccceeecccCCCCeeEEEEEEEecc-
Q 013597 341 IDKPFLLKLKLTNQTDKEQGPFEIWLSQN---DSD--EEKVV-M-------INGLRIMALAPVEAFGSTDFHLNLIATK- 406 (439)
Q Consensus 341 l~~pF~v~~~v~N~s~r~~~~l~l~l~~~---~~~--~~~~~-~-------~~G~s~~~Lg~L~P~~s~~~~L~l~pl~- 406 (439)
++..+.++++|+|+++.... ..+....- ..+ ..... . ........+ .|+||++.+|.+++-+=.
T Consensus 6 ~~~~~~~~itl~N~~~~~~t-y~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-TV~ag~s~~v~vti~~p~~ 83 (112)
T PF06280_consen 6 TGNKFSFTITLHNYGDKPVT-YTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTV-TVPAGQSKTVTVTITPPSG 83 (112)
T ss_dssp E-SEEEEEEEEEE-SSS-EE-EEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEE-EE-TTEEEEEEEEEE--GG
T ss_pred cCCceEEEEEEEECCCCCEE-EEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeE-EECCCCEEEEEEEEEehhc
Confidence 35679999999999888765 55554410 000 00000 0 222222334 579999999999988844
Q ss_pred ---cceEEeCc-eEEEec
Q 013597 407 ---LGVQRITG-ITVFDK 420 (439)
Q Consensus 407 ---~Glq~isg-I~l~D~ 420 (439)
.-.+.+.| |.+.+.
T Consensus 84 ~~~~~~~~~eG~I~~~~~ 101 (112)
T PF06280_consen 84 LDASNGPFYEGFITFKSS 101 (112)
T ss_dssp GHHTT-EEEEEEEEEESS
T ss_pred CCcccCCEEEEEEEEEcC
Confidence 33567777 555543
No 41
>PF12735 Trs65: TRAPP trafficking subunit Trs65; InterPro: IPR024662 This family is one of the subunits of the TRAPP Golgi trafficking complex []. TRAPP subunits are found in two different sized complexes, TRAPP I and TRAPP II. While both complexes contain the same seven subunits, Bet3p, Bet5p, Trs20p, Trs23p, Trs31p, Trs33p and Trs85p, with TRAPPC human equivalents, TRAPP II has the additional three subunits ,Trs65p, Trs120p and Trs130p []. While it has been implicated in cell wall biogenesis and stress response, the role of Trs65 in TRAPP II is supported by the findings that the protein co-localises with Trs130p, and deletion of TRS65 in yeast leads to a conditional lethal phenotype if either one of the other TRAPP II-specific subunits is modified []. Furthermore, the trs65 mutant has reduced Ypt31/32p guanine nucleotide exchange, GEF, activity []. Trs65 is also known as killer toxin-resistance protein 11.
Probab=50.23 E-value=1.8e+02 Score=29.24 Aligned_cols=46 Identities=13% Similarity=0.164 Sum_probs=32.8
Q ss_pred CccccCCCCeeeEEEEEEccccCceEEEEEEEEEcCCCceeeeceE
Q 013597 142 PVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQF 187 (439)
Q Consensus 142 ~~~~L~pg~~ld~iv~~~lke~G~h~L~c~VsY~~~~Ge~~~frK~ 187 (439)
-++-|.||++++.=++|-==..|.|.|-.-=-+-..+||..-+|+.
T Consensus 256 riGpL~P~~c~~~eL~fi~l~~G~~~L~~lkvvDl~t~e~~di~~l 301 (306)
T PF12735_consen 256 RIGPLAPGACYSVELRFIALSPGVHNLEGLKVVDLNTNEHVDIGDL 301 (306)
T ss_pred cccccCCCceEEEEEEEEEeccceEeecceEEEECCCCceEEeCCC
Confidence 4667899999999888888888999774332233445776666654
No 42
>KOG1931 consensus Putative transmembrane protein [General function prediction only]
Probab=48.35 E-value=30 Score=40.29 Aligned_cols=57 Identities=9% Similarity=0.095 Sum_probs=43.6
Q ss_pred EEEEEEeCCCCCcceEEEecccceeecccCCCCeeEEEEEEEecccceEEeCceEEEec
Q 013597 362 FEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDK 420 (439)
Q Consensus 362 l~l~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl~~Glq~isgI~l~D~ 420 (439)
-++.-+... ....++++|.+...+..=.-.++..+.+.++||.+|+..+|.++|..-
T Consensus 1069 ~elmYEv~a--~s~~Wli~Gr~~g~Is~~~~q~t~~i~v~~vPL~aGyl~lP~v~l~n~ 1125 (1156)
T KOG1931|consen 1069 GELMYEVLA--NSNNWLIAGRKRGVISMKRKQTTHQISVHVVPLKAGYLPLPRVRLTNY 1125 (1156)
T ss_pred ceEEEEecC--CCceEEEecCccceeeeeccccceEEEEEEEEeccccccCceeecccc
Confidence 445554433 235899999998887444444689999999999999999999999853
No 43
>PF13584 BatD: Oxygen tolerance
Probab=48.11 E-value=2.7e+02 Score=29.51 Aligned_cols=130 Identities=17% Similarity=0.175 Sum_probs=72.5
Q ss_pred eeeEEEEEeecCCCCCCCccccCceeeEEEEEEEEcCCCCCceeeEEEEeeec------------CccCCeEEEEEecCc
Q 013597 270 IHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGRLQTQQILGTT------------ITSKEIELNVVEVPS 337 (439)
Q Consensus 270 ~~q~lf~l~~~~~~~~~~~~~~g~~~lGkL~I~WRs~~Ge~G~LqTs~l~~~~------------p~~~dl~l~v~~~P~ 337 (439)
...|.|.|.|+. .|...|+-+.|.+.+. ...|..+.... ...+++.+.+.--+.
T Consensus 72 ~~~~~~~l~p~~---------~G~~~IP~~~v~v~Gk-----~~~S~pi~i~V~~~~~~~~~~~~~~~~~~~l~~~v~~~ 137 (484)
T PF13584_consen 72 STTYTYTLQPKK---------TGTFTIPPFTVEVDGK-----TYKSQPITIEVSKASQSPSQPPSNADDDVFLEAEVSKK 137 (484)
T ss_pred EEEEEEEEEecc---------cceEEEceEEEEECCE-----EEeecCEEEEEEecccCCccccccccccEEEEEEeCCC
Confidence 456677777754 3677888888877431 22333332211 135677777765577
Q ss_pred eeEeCCcEEEEEEEEeCCCCC-cccEEEEEEeCCCCCcceEEEecccce-eec--ccCCCC--eeE-EEEEEEecccceE
Q 013597 338 VVGIDKPFLLKLKLTNQTDKE-QGPFEIWLSQNDSDEEKVVMINGLRIM-ALA--PVEAFG--STD-FHLNLIATKLGVQ 410 (439)
Q Consensus 338 ~v~l~~pF~v~~~v~N~s~r~-~~~l~l~l~~~~~~~~~~~~~~G~s~~-~Lg--~L~P~~--s~~-~~L~l~pl~~Glq 410 (439)
.+.+++|+.+++++.-..+.. .+ .. .+..-+ ..++.+.-.... ... .+.... ... ..+-++|.++|-.
T Consensus 138 ~~Yvge~v~lt~~ly~~~~~~~~~-~~-~~~~p~---~~~~~~~~~~~~~~~~~~~i~G~~y~~~~~~~~~l~P~ksG~l 212 (484)
T PF13584_consen 138 SVYVGEPVILTLRLYTRNNFRQLG-IE-ELPPPD---FEGFWVEQLGDDRQYEEERINGRRYRVIELRRYALFPQKSGTL 212 (484)
T ss_pred ceecCCcEEEEEEEEEecCchhcc-cc-ccCCCC---CCCcEEEECCCCCceeEEEECCEEEEEEEEEEEEEEeCCceeE
Confidence 899999999999998653322 11 00 011111 123333322111 010 112211 233 3478999999999
Q ss_pred EeCceEEE
Q 013597 411 RITGITVF 418 (439)
Q Consensus 411 ~isgI~l~ 418 (439)
.|+.+++.
T Consensus 213 ~I~~~~~~ 220 (484)
T PF13584_consen 213 TIPPATFE 220 (484)
T ss_pred EecCEEEE
Confidence 99986664
No 44
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=46.88 E-value=38 Score=24.85 Aligned_cols=31 Identities=19% Similarity=0.392 Sum_probs=27.1
Q ss_pred eeecceEEEEEEEEcCCCcceEEEEEEEEEe
Q 013597 97 IYLGETFCSYISINNSSTLEVRDVVIKAEIQ 127 (439)
Q Consensus 97 iylGEtFs~~i~v~N~s~~~v~~V~ikaelq 127 (439)
+..|+++.-.|.+.|.....+++|.|.=.|-
T Consensus 8 ~~~Gd~v~Yti~v~N~g~~~a~~v~v~D~lP 38 (53)
T TIGR01451 8 ATIGDTITYTITVTNNGNVPATNVVVTDILP 38 (53)
T ss_pred cCCCCEEEEEEEEEECCCCceEeEEEEEcCC
Confidence 6789999999999999999999998875444
No 45
>KOG3317 consensus Translocon-associated complex TRAP, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.08 E-value=1.7e+02 Score=27.24 Aligned_cols=74 Identities=19% Similarity=0.168 Sum_probs=53.9
Q ss_pred CCcEEEEEEEEeCCCCCcccEEEEEEeCCCCCcceE-EEecccceeecccCCCCeeEEEEEEEecccceEEeCceEEE
Q 013597 342 DKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVV-MINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVF 418 (439)
Q Consensus 342 ~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~-~~~G~s~~~Lg~L~P~~s~~~~L~l~pl~~Glq~isgI~l~ 418 (439)
++-+.+++-|.|.-+.+. +.|.|+.+.= ..+.| ++.|+....-++|++|+.+..++.+.|...|+-.-..-.|+
T Consensus 41 ~rd~~leY~IyNvGsspA--ldVtLsD~Sf-pt~~FeIvkG~~~~swerIpags~vsHsivl~prv~g~f~~t~atVt 115 (188)
T KOG3317|consen 41 ARDVSLEYDIYNVGSSPA--LDVTLSDNSF-PTKTFEIVKGNLSVSWERIPAGSNVSHSIVLRPRVKGVFNGTPATVT 115 (188)
T ss_pred ceeeEEEEeeEEcCCCcc--eeEEecCCCC-CccceeeeccccccceeecCCCCceEEEEEEeecccceeccCceEEE
Confidence 357889999999844433 3344544221 11233 67899999999999999999999999999999777665554
No 46
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=41.77 E-value=79 Score=30.31 Aligned_cols=73 Identities=10% Similarity=0.043 Sum_probs=52.9
Q ss_pred EEEEEEeCCCCCcccEEEEEEeCCCCCcceEEEecccceeecccCCCCeeEEEEEEEecccceEEeCceEEEecCCCeEe
Q 013597 347 LKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDKLEKITY 426 (439)
Q Consensus 347 v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl~~Glq~isgI~l~D~~~~r~y 426 (439)
--+.|.|++..... ..+... ++-.++.-+ .-|.|+|++++.+...|.++.- -..++.++-|+++=+.|
T Consensus 21 e~~sv~Nnspepvg---fKVKTT----aPK~YcVRP---N~g~Iep~stv~VeVilq~l~e--EpapdfKCrdKFLiqs~ 88 (242)
T COG5066 21 EMFSVQNNSPEPVG---FKVKTT----APKDYCVRP---NMGLIEPMSTVEVEVILQGLTE--EPAPDFKCRDKFLIQSY 88 (242)
T ss_pred eeeEeecCCCCcee---EEeecc----CCcceeEcC---CCceeccCCeeEEEEEeecccc--CCCCCccccceeEEEEe
Confidence 44677898877755 444443 233444433 4678999999999998887754 46788999999999999
Q ss_pred ccCCC
Q 013597 427 DSLPD 431 (439)
Q Consensus 427 ~~~~~ 431 (439)
.++..
T Consensus 89 ~~~~~ 93 (242)
T COG5066 89 RFDWR 93 (242)
T ss_pred ccChh
Confidence 88754
No 47
>PF13584 BatD: Oxygen tolerance
Probab=38.58 E-value=5e+02 Score=27.47 Aligned_cols=104 Identities=18% Similarity=0.158 Sum_probs=63.0
Q ss_pred CCeEEEEEecCceeEeCCcEEEEEEEEeCCCCC-cccEEEEEEeCCCCCcceEEE-ecccceeecccC---CCCeeEEEE
Q 013597 326 KEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKE-QGPFEIWLSQNDSDEEKVVMI-NGLRIMALAPVE---AFGSTDFHL 400 (439)
Q Consensus 326 ~dl~l~v~~~P~~v~l~~pF~v~~~v~N~s~r~-~~~l~l~l~~~~~~~~~~~~~-~G~s~~~Lg~L~---P~~s~~~~L 400 (439)
+++.|...--|..+++++|++++++|.-.-+-. +..-.+.+. +++-+ ........ ... ..+++++.+
T Consensus 271 g~f~l~~~~~~~~~~~Ge~vt~ti~i~g~Gn~~~~~lP~l~~~-------~~~~vy~~~~~~~~-~~~~~g~~g~~~~~~ 342 (484)
T PF13584_consen 271 GNFSLSQSWDPTEVKVGEPVTRTITISGEGNLPSIQLPPLNLP-------KGFRVYPPKPQEQD-KPSGGGLTGSRTFKY 342 (484)
T ss_pred eEEEEEEEcCcccccCCCeEEEEEEEEEEcchhcccCCCCCCC-------cccEEcCCCccccc-cccCCcceEEEEEEE
Confidence 567777665578899999999999998542221 210112111 12322 21111111 111 235789999
Q ss_pred EEEecccceEEeCceEE--EecCCCeEeccC-CCeeeEee
Q 013597 401 NLIATKLGVQRITGITV--FDKLEKITYDSL-PDLEIFVD 437 (439)
Q Consensus 401 ~l~pl~~Glq~isgI~l--~D~~~~r~y~~~-~~~~vfV~ 437 (439)
.++|...|-..||.|++ +|+.+++-.... +...|=|.
T Consensus 343 ~~ip~~~G~~~lP~i~~~~fdp~~~~y~~~~~~~~~i~V~ 382 (484)
T PF13584_consen 343 TLIPKKPGDFTLPAIRFSWFDPQTGKYETATLPPITITVA 382 (484)
T ss_pred EEEeCCCCeEEcCCeEEEEEcCCCCeEEEEEcCCEEEEEe
Confidence 99999999999999887 588877655443 44444443
No 48
>PF15146 FANCAA: Fanconi anemia-associated
Probab=38.19 E-value=66 Score=33.79 Aligned_cols=83 Identities=13% Similarity=0.068 Sum_probs=54.9
Q ss_pred eEEEEEecCceeEeCCcEEEEEEEEeCCCCCccc---EEEEEEeCC----CC-CcceEEEecccceeecccCCCCeeEEE
Q 013597 328 IELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGP---FEIWLSQND----SD-EEKVVMINGLRIMALAPVEAFGSTDFH 399 (439)
Q Consensus 328 l~l~v~~~P~~v~l~~pF~v~~~v~N~s~r~~~~---l~l~l~~~~----~~-~~~~~~~~G~s~~~Lg~L~P~~s~~~~ 399 (439)
|..+++.-=+...+..-.+++|.+.|.|+-.++. +-|.+.... ++ ...+.-| .+++..|.||+.++|+
T Consensus 59 I~C~~tt~WSrll~qD~L~~tCvLeNsS~~sLe~GWtLCiqv~~~s~~~~~~~~~Satty----tfPv~~L~PG~~~EVt 134 (435)
T PF15146_consen 59 ISCTVTTSWSRLLLQDSLTATCVLENSSDFSLERGWTLCIQVLSSSCALDTDSASSATTY----TFPVDNLGPGERREVT 134 (435)
T ss_pred ceeEEechhhHHHhhcceeeEEEEecCCCccccCCceEEEEeccCCCCcccCCCCCceeE----EEEcccCCCCceeEEE
Confidence 4444443334455677889999999999876652 445443321 00 1112233 3678899999999999
Q ss_pred EEEEecccceEEeCc
Q 013597 400 LNLIATKLGVQRITG 414 (439)
Q Consensus 400 L~l~pl~~Glq~isg 414 (439)
|.|-|-.-|--.+|=
T Consensus 135 LPLg~~~~g~l~lPv 149 (435)
T PF15146_consen 135 LPLGPAEDGKLDLPV 149 (435)
T ss_pred EecCccccccccccE
Confidence 999888888777764
No 49
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=35.50 E-value=1.5e+02 Score=22.75 Aligned_cols=46 Identities=11% Similarity=0.197 Sum_probs=33.9
Q ss_pred ecCccCCeEEEEEecCceeEeCCcEEEEEEEEeCCCCCcccEEEEEEe
Q 013597 321 TTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQ 368 (439)
Q Consensus 321 ~~p~~~dl~l~v~~~P~~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~ 368 (439)
......++.+.-..-+..+.+++.+.++++++|....... -+.+..
T Consensus 19 ~~~~~~~~~~~k~~~~~~~~~Gd~v~ytitvtN~G~~~a~--nv~v~D 64 (76)
T PF01345_consen 19 TVVAIPDLSITKTVNPSTANPGDTVTYTITVTNTGPAPAT--NVVVTD 64 (76)
T ss_pred eccCCCCEEEEEecCCCcccCCCEEEEEEEEEECCCCeeE--eEEEEE
Confidence 3445566766666778889999999999999999666543 355544
No 50
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=33.31 E-value=1e+02 Score=25.41 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=28.2
Q ss_pred cCceeEeCCcEEEEEEEEeCCCCCcccEEEEEEeCCCCCcceEEEecccceeecccCCCCeeEEEEEEEecccceE
Q 013597 335 VPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQ 410 (439)
Q Consensus 335 ~P~~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl~~Glq 410 (439)
-|+.+.+.+==.+++.++|..++..+ +.+ .+. ... ..|.||++.++.+ -|.++|-.
T Consensus 33 ~P~~i~v~~G~~v~l~~~N~~~~~h~---~~i-------------~~~-~~~-~~l~~g~~~~~~f--~~~~~G~y 88 (104)
T PF13473_consen 33 SPSTITVKAGQPVTLTFTNNDSRPHE---FVI-------------PDL-GIS-KVLPPGETATVTF--TPLKPGEY 88 (104)
T ss_dssp ES-EEEEETTCEEEEEEEE-SSS-EE---EEE-------------GGG-TEE-EEE-TT-EEEEEE--EE-S-EEE
T ss_pred ecCEEEEcCCCeEEEEEEECCCCcEE---EEE-------------CCC-ceE-EEECCCCEEEEEE--cCCCCEEE
Confidence 47776665555555668898666533 323 221 122 4689999987776 47777743
No 51
>PF00207 A2M: Alpha-2-macroglobulin family; InterPro: IPR001599 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0004866 endopeptidase inhibitor activity; PDB: 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 2PN5_A 3FRP_G 3HRZ_B ....
Probab=29.88 E-value=2.2e+02 Score=22.87 Aligned_cols=37 Identities=11% Similarity=0.104 Sum_probs=28.3
Q ss_pred EEEeecCeEEEEEE---EEeCCceEEEEEEEecccccEEE
Q 013597 189 KFIVSNPLSVRTKV---RVVKEITFLEACIENHTKSNLYM 225 (439)
Q Consensus 189 kF~v~~Pl~VktK~---~~~~~~~~LEaqiqN~s~~~l~l 225 (439)
+|.+.+||-|+..+ ...+|++.+.+.|.|-++..+.+
T Consensus 49 ~~~v~~p~~i~~~lP~~l~~GD~~~i~v~v~N~~~~~~~v 88 (92)
T PF00207_consen 49 EITVFKPFFIQLNLPRSLRRGDQIQIPVTVFNYTDKDQEV 88 (92)
T ss_dssp EEEEB-SEEEEEE--SEEETTSEEEEEEEEEE-SSS-EEE
T ss_pred EEEEEeeEEEEcCCCcEEecCCEEEEEEEEEeCCCCCEEE
Confidence 89999999999885 34589999999999999887754
No 52
>COG1470 Predicted membrane protein [Function unknown]
Probab=29.21 E-value=2.4e+02 Score=30.31 Aligned_cols=74 Identities=14% Similarity=0.173 Sum_probs=0.0
Q ss_pred EEEEEecCceeEeCCcEEEEEEEEeCCCCCcccEEEEEEeCCCCCcceEEEecccceeecccCCCCeeEEEEEEEe
Q 013597 329 ELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIA 404 (439)
Q Consensus 329 ~l~v~~~P~~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~p 404 (439)
++..-..--.+..+.-+.++++|.|+...... +.+.++.-+.+=..-|..-+.+--.+ +|.||.+.+|.+.+.|
T Consensus 270 El~~s~~~~~i~~~~t~sf~V~IeN~g~~~d~-y~Le~~g~pe~w~~~Fteg~~~vt~v-kL~~gE~kdvtleV~p 343 (513)
T COG1470 270 ELNSSDIYLEISPSTTASFTVSIENRGKQDDE-YALELSGLPEGWTAEFTEGELRVTSV-KLKPGEEKDVTLEVYP 343 (513)
T ss_pred EeecccceeEEccCCceEEEEEEccCCCCCce-eEEEeccCCCCcceEEeeCceEEEEE-EecCCCceEEEEEEec
No 53
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=28.08 E-value=3.1e+02 Score=21.83 Aligned_cols=67 Identities=13% Similarity=0.138 Sum_probs=45.6
Q ss_pred eeecceEEEEEEEEcCCCcceE--EEEEEEEEeCCCee-----EeccCCCCCCccccCCCCeeeEEEEEEccccCceEEE
Q 013597 97 IYLGETFCSYISINNSSTLEVR--DVVIKAEIQTDKQR-----ILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLV 169 (439)
Q Consensus 97 iylGEtFs~~i~v~N~s~~~v~--~V~ikaelqT~s~r-----~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L~ 169 (439)
..+|+....+|...+.....+. ...+.|.+..++.. +... +.+...| ...++|..++.|.|.|.
T Consensus 17 ~~~g~~~~F~V~~~d~~g~~~~~~~~~~~v~i~~p~~~~~~~~~~~~------v~~~~~G---~y~v~y~p~~~G~y~i~ 87 (101)
T PF00630_consen 17 AVVGEPATFTVDTRDAGGNPVSSGGDEFQVTITSPDGKEEPVPVPVE------VIDNGDG---TYTVSYTPTEPGKYKIS 87 (101)
T ss_dssp EETTSEEEEEEEETTTTSSBEESTSSEEEEEEESSSSESS--EEEEE------EEEESSS---EEEEEEEESSSEEEEEE
T ss_pred eECCCcEEEEEEEccCCCCccccCCceeEEEEeCCCCCccccccceE------EEECCCC---EEEEEEEeCccEeEEEE
Confidence 4889999999999988766554 24556677666543 2220 1122223 46799999999999998
Q ss_pred EEE
Q 013597 170 CTA 172 (439)
Q Consensus 170 c~V 172 (439)
+.+
T Consensus 88 V~~ 90 (101)
T PF00630_consen 88 VKI 90 (101)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 54
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=27.75 E-value=2.4e+02 Score=29.99 Aligned_cols=88 Identities=19% Similarity=0.261 Sum_probs=55.2
Q ss_pred ccCCeEEEEEecCceeEeC--C---cEEEEEEEEeCCCCCcccEEEEEEeCCCCCcceEEEecccceeecccCCCCeeEE
Q 013597 324 TSKEIELNVVEVPSVVGID--K---PFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDF 398 (439)
Q Consensus 324 ~~~dl~l~v~~~P~~v~l~--~---pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~ 398 (439)
.+.++++.|...+....++ . -=..+++|.|.+++... +.++++..+ +..+.+... .+ .++||+..++
T Consensus 322 ~r~~~~~~v~r~r~~l~~~~~~g~i~N~Y~~~i~Nk~~~~~~-~~l~v~g~~-----~~~~~~~~~-~i-~v~~g~~~~~ 393 (434)
T TIGR02745 322 TREPMDLNVLRDRNLLYVRNSDGVVENTYTLKILNKTEQPHE-YYLSVLGLP-----GIKIEGPGA-PI-HVKAGEKVKL 393 (434)
T ss_pred CCCceEEEEEecCCcceEECCCCcEEEEEEEEEEECCCCCEE-EEEEEecCC-----CcEEEcCCc-eE-EECCCCEEEE
Confidence 3688888887655432111 1 12367889999999887 888886532 455555421 33 5799999988
Q ss_pred EEEEEe----cccceEEeCceEEEec
Q 013597 399 HLNLIA----TKLGVQRITGITVFDK 420 (439)
Q Consensus 399 ~L~l~p----l~~Glq~isgI~l~D~ 420 (439)
.+.+.. +..|.+.|. +++.|.
T Consensus 394 ~v~v~~~~~~~~~~~~~i~-~~v~~~ 418 (434)
T TIGR02745 394 PVFLRTPPDALKSGITSIE-IRAYAE 418 (434)
T ss_pred EEEEEechhhccCCceeEE-EEEEEC
Confidence 888655 345555433 445553
No 55
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=27.64 E-value=1.5e+02 Score=25.09 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=11.6
Q ss_pred EEEEEEEeCCCCCcc
Q 013597 346 LLKLKLTNQTDKEQG 360 (439)
Q Consensus 346 ~v~~~v~N~s~r~~~ 360 (439)
.++++|+|.-||+..
T Consensus 21 ~~~l~V~NtGDRPIQ 35 (101)
T TIGR00192 21 TVSVKVKNTGDRPIQ 35 (101)
T ss_pred EEEEEEEeCCCcceE
Confidence 478889999998743
No 56
>PF08033 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterPro: IPR012990 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes part of the Sec23/24 beta-barrel domain, which is formed from approximately 180 residues from three segments of the polypeptide. The strands of the barrel are oriented roughly parallel to the membrane such that one end of the barrel forms part of the inner surface of the coat and the other end part of the membrane-distal surface. The barrel is constructed from two opposed sheets: a six-stranded beta sheet facing partly towards the zinc finger domain and partly towards the solvent, and a five-stranded beta sheet facing the helical domain.; PDB: 3EFO_B 3EG9_B 1PD0_A 1PD1_A 1M2V_B 1PCX_A 3EH2_C 3EGD_A 2NUP_A 3EGX_A ....
Probab=27.47 E-value=1.1e+02 Score=24.85 Aligned_cols=40 Identities=25% Similarity=0.438 Sum_probs=27.1
Q ss_pred ccccCCCCeeeEEEEEE--ccccCceEEEEEEEEEcCCCcee
Q 013597 143 VESIRAGGRYDFIVEHD--VKELGAHTLVCTALYSDGEGERK 182 (439)
Q Consensus 143 ~~~L~pg~~ld~iv~~~--lke~G~h~L~c~VsY~~~~Ge~~ 182 (439)
++.+.++.++.+.++++ +++...-.+-+.+.|++.+|+++
T Consensus 44 ~~~l~~~~s~~~~~~~~~~~~~~~~~~iQ~~~~Yt~~~G~r~ 85 (96)
T PF08033_consen 44 LPSLDPDTSFAFEFEIDEDLPNGSQAYIQFALLYTDSNGERR 85 (96)
T ss_dssp EEEEETT--EEEEEEESSBTBTTSEEEEEEEEEEEETTSEEE
T ss_pred ecccCCCCEEEEEEEECCCCCCCCeEEEEEEEEEECCCCCEE
Confidence 34577888887777776 33334557788999999999854
No 57
>PF09478 CBM49: Carbohydrate binding domain CBM49; InterPro: IPR019028 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This domain is found at the C-terminal of cellulases and in vitro binding studies have shown it to binds to crystalline cellulose []. ; GO: 0030246 carbohydrate binding, 0005576 extracellular region
Probab=26.83 E-value=1.4e+02 Score=23.53 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=31.4
Q ss_pred EEEEEEcCCCcceEEEEEEEEEeCCCeeEeccCCC------CCCccccCCCCeeeEE
Q 013597 105 SYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTS------KSPVESIRAGGRYDFI 155 (439)
Q Consensus 105 ~~i~v~N~s~~~v~~V~ikaelqT~s~r~~L~~~~------~~~~~~L~pg~~ld~i 155 (439)
--+.+.|.++.+|+++.|.++ ....+-..+.... +.=...|+||+++.|-
T Consensus 21 y~v~I~N~~~~~I~~~~i~~~-~l~~~iW~l~~~~~~~y~lPs~~~~i~pg~s~~FG 76 (80)
T PF09478_consen 21 YDVTITNNGSKPIKSLKISID-NLYGSIWGLDKVSGNTYTLPSYQPTIKPGQSFTFG 76 (80)
T ss_pred EEEEEEECCCCeEEEEEEEEC-ccchhheeEEeccCCEEECCccccccCCCCEEEEE
Confidence 446678999999999999998 4333222221100 1113478899988764
No 58
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=26.75 E-value=3.1e+02 Score=28.64 Aligned_cols=80 Identities=14% Similarity=0.161 Sum_probs=47.5
Q ss_pred EEEEEcCCCcceEEEEEEEEEeCCCeeEeccCCCCCCccccCCCCeeeEEEEEEcccc-CceEEEE--EEEEEcCCCcee
Q 013597 106 YISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKEL-GAHTLVC--TALYSDGEGERK 182 (439)
Q Consensus 106 ~i~v~N~s~~~v~~V~ikaelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~-G~h~L~c--~VsY~~~~Ge~~ 182 (439)
.+.|.=.+...+++|.+.+..+.| +... ...-.+..+.+|.+-...+.+-+++. =.+.+.| .++|+.+.|..+
T Consensus 2 ~v~v~~~~~~~~~~v~v~v~~~~P---l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~pssl~v~v~asy~~~~G~~r 77 (377)
T PF14728_consen 2 TVKVTLKSRSTLENVQVSVVVDPP---LACS-QDTFVFENISPGSSQTVEISFYVSGSLPPSSLEVTVVASYTTPTGIPR 77 (377)
T ss_pred eEEEEEecceeeEeeEEEEEeCCC---Eeec-CCeEEEEecCCCCcEEEEEEEEeCCCcCCccceEEEEEEEECCCccce
Confidence 444554556778888888877766 1110 01112456788777666666666543 2345544 458999989876
Q ss_pred eeceEEE
Q 013597 183 YLPQFFK 189 (439)
Q Consensus 183 ~frK~fk 189 (439)
...+.++
T Consensus 78 v~~~~~~ 84 (377)
T PF14728_consen 78 VVQCTFD 84 (377)
T ss_pred eeEEEEE
Confidence 6555433
No 59
>PRK13202 ureB urease subunit beta; Reviewed
Probab=26.39 E-value=1.6e+02 Score=25.03 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=12.7
Q ss_pred EEEEEEEEeCCCCCcc
Q 013597 345 FLLKLKLTNQTDKEQG 360 (439)
Q Consensus 345 F~v~~~v~N~s~r~~~ 360 (439)
=.++++|+|.-||+..
T Consensus 21 ~~~~l~V~NtGDRPIQ 36 (104)
T PRK13202 21 SRLQMRIINAGDRPVQ 36 (104)
T ss_pred ceEEEEEEeCCCCceE
Confidence 4688899999999744
No 60
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=26.02 E-value=2.8e+02 Score=24.37 Aligned_cols=39 Identities=15% Similarity=0.145 Sum_probs=28.1
Q ss_pred EEEEEecCceeEeCCcEEEEEEEEeCCCCCcccEEEEEEe
Q 013597 329 ELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQ 368 (439)
Q Consensus 329 ~l~v~~~P~~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~ 368 (439)
++.+.+.-. ...++-|.+...|+|.++++.....|.++-
T Consensus 49 ~~~~~~~~~-l~~~~~~~v~g~V~N~g~~~i~~c~i~~~l 87 (149)
T PF09624_consen 49 ELTLTSQKR-LQYSESFYVDGTVTNTGKFTIKKCKITVKL 87 (149)
T ss_pred eEEEeeeee-eeeccEEEEEEEEEECCCCEeeEEEEEEEE
Confidence 344443322 668899999999999999988765555554
No 61
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=25.97 E-value=2.2e+02 Score=23.92 Aligned_cols=91 Identities=16% Similarity=0.128 Sum_probs=51.2
Q ss_pred ceeEeCCcEEEEEEEEeCCC-CCcccEEEEEEeCCCCCcceEEEecccce----eecccCCCC--eeEEEEEEEecccce
Q 013597 337 SVVGIDKPFLLKLKLTNQTD-KEQGPFEIWLSQNDSDEEKVVMINGLRIM----ALAPVEAFG--STDFHLNLIATKLGV 409 (439)
Q Consensus 337 ~~v~l~~pF~v~~~v~N~s~-r~~~~l~l~l~~~~~~~~~~~~~~G~s~~----~Lg~L~P~~--s~~~~L~l~pl~~Gl 409 (439)
+.+..++++.+++.+....+ .... +.+.+...+ +..+.|.... .+...+ ++ +.++.+... |.+|-
T Consensus 29 ~~~~~ge~~~i~i~~~~~~~i~~~~-~~~~i~~~~-----g~~v~~~~t~~~~~~~~~~~-~g~~~~~~~i~~~-L~~G~ 100 (142)
T PF14524_consen 29 SSFESGEPIRIRIDYEVNEDIDDPV-FGFAIRDSD-----GQRVFGTNTYDSGFPIPLSE-GGTYEVTFTIPKP-LNPGE 100 (142)
T ss_dssp SSEETTSEEEEEEEEEESS-EEEEE-EEEEEEETT-------EEEEEEHHHHT--EEE-T-T-EEEEEEEEE---B-SEE
T ss_pred eEEeCCCEEEEEEEEEECCCCCccE-EEEEEEcCC-----CCEEEEECccccCccccccC-CCEEEEEEEEcCc-cCCCe
Confidence 45789999999999998633 3333 667776653 4444443322 344442 34 556677777 99998
Q ss_pred EEeCceEEEecCCCeEeccCCCeeeE
Q 013597 410 QRITGITVFDKLEKITYDSLPDLEIF 435 (439)
Q Consensus 410 q~isgI~l~D~~~~r~y~~~~~~~vf 435 (439)
-.|+=--..+......|++.+.+-.|
T Consensus 101 Y~i~v~l~~~~~~~~~~d~~~~~~~f 126 (142)
T PF14524_consen 101 YSISVGLGDDSSGGEVLDWIEDALSF 126 (142)
T ss_dssp EEEEEEEEETTTEEEEEEEEEEEEEE
T ss_pred EEEEEEEEecCCCCEEEEEECCEEEE
Confidence 88874222356677777776444333
No 62
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=25.45 E-value=5.8e+02 Score=25.27 Aligned_cols=101 Identities=8% Similarity=0.086 Sum_probs=0.0
Q ss_pred ecCceeEeCCcEEEEEEEEeCCCCCcccEEEEEEeCCCCCc----ceEEEecccceeecccCCCCeeEEEEEEEecccce
Q 013597 334 EVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEE----KVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGV 409 (439)
Q Consensus 334 ~~P~~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~----~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl~~Gl 409 (439)
+.|..+..+++.++.+-|.||-.+.+. -.+.+.-...... ....-........ .|..|.+.+..+++.|...|.
T Consensus 182 ~Ypt~l~~ge~~~v~vgI~NhE~~~~~-Ytv~v~l~~~~~~~~~~~~~~~~~l~~~~~-~L~~n~t~~~~~~~~~~~~~~ 259 (287)
T PF07760_consen 182 DYPTNLTSGEPGTVIVGIENHEGRPEN-YTVVVVLQNVTWNPNNYNVMESTVLDRPIV-TLADNETWEQPYKFTPFITGE 259 (287)
T ss_pred cCCeeEEcCCcEEEEEEEEcCCCCcEE-EEEEEEEeccccccccccccchhcccceEE-EeCCCCeEEEEEEEEEecCCC
Q ss_pred EEeCceEEEecCCCeEeccCCCeeeEee
Q 013597 410 QRITGITVFDKLEKITYDSLPDLEIFVD 437 (439)
Q Consensus 410 q~isgI~l~D~~~~r~y~~~~~~~vfV~ 437 (439)
...==..+++.....++.| .-.++||.
T Consensus 260 ~~~l~~lLY~~~~~~~~ay-r~~~Lwv~ 286 (287)
T PF07760_consen 260 NPRLEYLLYKGGVNSENAY-RSLHLWVN 286 (287)
T ss_pred ceEEEEEEEcCCCCcchhe-eEEEEEEE
No 63
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.73 E-value=1.8e+02 Score=34.16 Aligned_cols=70 Identities=17% Similarity=0.142 Sum_probs=49.2
Q ss_pred eEeCCcEEEEEEEEeC--CCCCcccEEEEEEeCCCCCcceEEEecccceeecccCCCCe-eEEEEEEEecccceEEeCce
Q 013597 339 VGIDKPFLLKLKLTNQ--TDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGS-TDFHLNLIATKLGVQRITGI 415 (439)
Q Consensus 339 v~l~~pF~v~~~v~N~--s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s-~~~~L~l~pl~~Glq~isgI 415 (439)
-.+++|..|+|+|.|. .|-..+++.+..+... ...+. +.+ .++|... .+++|.-+|+..|=..|.|-
T Consensus 689 wVvdepvef~v~v~Np~~fdl~V~Di~L~~egvn---F~~~~------vs~-~~Ppns~~e~Irl~g~P~e~gpl~i~gy 758 (1235)
T KOG1953|consen 689 WVVDEPVEFSVYVRNPLSFDLEVQDIHLETEGVN---FKCSH------VSF-TMPPNSIAERIRLTGTPTETGPLHIVGY 758 (1235)
T ss_pred EEeCCceEEEEEEcCccceeEEEeeEEEEecccc---ceeee------eee-ecCcccccceEEEeccccccCceeeeeE
Confidence 4689999999999997 4544443555554432 11222 223 4677777 89999999999999999996
Q ss_pred EEE
Q 013597 416 TVF 418 (439)
Q Consensus 416 ~l~ 418 (439)
++.
T Consensus 759 ~v~ 761 (1235)
T KOG1953|consen 759 RVK 761 (1235)
T ss_pred EEE
Confidence 664
No 64
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=24.31 E-value=2.3e+02 Score=23.83 Aligned_cols=50 Identities=14% Similarity=0.288 Sum_probs=34.8
Q ss_pred EEEEEEEeCCCCCcccEEEEEEeC---C-CCCcceEEEecccceeecccCCCCeeEEEE
Q 013597 346 LLKLKLTNQTDKEQGPFEIWLSQN---D-SDEEKVVMINGLRIMALAPVEAFGSTDFHL 400 (439)
Q Consensus 346 ~v~~~v~N~s~r~~~~l~l~l~~~---~-~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L 400 (439)
...+.|+|.++..+- +++++... + ....+.|+++=. +-.|+||++..+.+
T Consensus 17 ~~~i~v~N~~~~~~~-vq~~v~~~~~~~~~~~~~~~~vsPp----~~~L~pg~~q~vRv 70 (122)
T PF00345_consen 17 SASITVTNNSDQPYL-VQVWVYDQDDEDEDEPTDPFIVSPP----IFRLEPGESQTVRV 70 (122)
T ss_dssp EEEEEEEESSSSEEE-EEEEEEETTSTTSSSSSSSEEEESS----EEEEETTEEEEEEE
T ss_pred EEEEEEEcCCCCcEE-EEEEEEcCCCcccccccccEEEeCC----ceEeCCCCcEEEEE
Confidence 678899999998877 88888761 1 112236776543 33579999988888
No 65
>COG1361 S-layer domain [Cell envelope biogenesis, outer membrane]
Probab=24.31 E-value=8.8e+02 Score=25.80 Aligned_cols=293 Identities=13% Similarity=0.048 Sum_probs=152.2
Q ss_pred eeecceEEEEEEEEcCCCcceEEEEEEEEEeCC--CeeEeccCCCCCCccccCCCCeeeEEEEE---EccccCceEEEEE
Q 013597 97 IYLGETFCSYISINNSSTLEVRDVVIKAEIQTD--KQRILLLDTSKSPVESIRAGGRYDFIVEH---DVKELGAHTLVCT 171 (439)
Q Consensus 97 iylGEtFs~~i~v~N~s~~~v~~V~ikaelqT~--s~r~~L~~~~~~~~~~L~pg~~ld~iv~~---~lke~G~h~L~c~ 171 (439)
+--|+.|--.+.+.|.......++.+...-.-+ -.+.............+. |+..+.-.+. +-...|.|.+-..
T Consensus 43 ~~~~~~~~l~v~~~n~~~~~~~~v~v~i~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~V~~~a~~g~y~i~v~ 121 (500)
T COG1361 43 ARPGEDVDLTVTIENVGELLAEDVKVEITPEYPFSLVSGETLLLSIGTLNFLG-GEPATVKFKLTVDENAKSGDYEIDVY 121 (500)
T ss_pred cCcccceEEEEEeccccccccccEEEEEEecccceeeEEEeecCCCceeeecC-CCcceEEEEEEEcCCCCCCcEEEeEE
Confidence 456999999999999988777777666655554 111111111112222333 4443333333 3456699999888
Q ss_pred EE--EEcCCCceeee--ceEEEEEeecC----eEEEEEEEEe--CCceEEEEEEEecccccEEEEeEEeeecCCceeeee
Q 013597 172 AL--YSDGEGERKYL--PQFFKFIVSNP----LSVRTKVRVV--KEITFLEACIENHTKSNLYMDQVEFEPSQNWSATML 241 (439)
Q Consensus 172 Vs--Y~~~~Ge~~~f--rK~fkF~v~~P----l~VktK~~~~--~~~~~LEaqiqN~s~~~l~le~v~Lep~~~~~~~~l 241 (439)
+. |....+..-.+ .....+.+..+ +.+-+.-..+ ++..-|..-|+|....+..=-.+.+++...+... +
T Consensus 122 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~v~~~~~~i~~G~~~~l~~~I~N~G~~~~~~v~l~~~~~~~~~~~-i 200 (500)
T COG1361 122 VSIIGSSDESEETSFTVEVTIYVEVDVPVIESFEVVSSPEAIIPGETNTLTLTIKNPGEGPAKNVSLSLESPTSYLGP-I 200 (500)
T ss_pred EEEEeecccceeEEEEeeeeEEEEEeecccceeEEecCccccCCCCccEEEEEEEeCCcccccceEEEEeCCcceecc-c
Confidence 85 33333322222 33333333333 4444332222 3445699999999887766555555541100000 0
Q ss_pred cCCCCCCCCCCccccccCCceEEeCCCCeeeEEEEEeecCCCCCCCccccCceeeEEEEEEEEcCCCCCceeeEEEEeee
Q 013597 242 KADGPHSDYNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGRLQTQQILGT 321 (439)
Q Consensus 242 n~~~~~~~~~~~~~~~~~~~~l~~~~gd~~q~lf~l~~~~~~~~~~~~~~g~~~lGkL~I~WRs~~Ge~G~LqTs~l~~~ 321 (439)
.+.. +.+ -.-.+.|+++...-|.+...... ....-..++.|.|+..-+..-...+.. -..
T Consensus 201 ------~~~~----~~~--~i~~l~p~es~~v~f~v~~~~~a-------~~g~y~i~i~i~~~~~~~~~~~~~~~~-~i~ 260 (500)
T COG1361 201 ------YSAN----DTP--YIGALGPGESVNVTFSVYAGSNA-------EPGTYTINLEITYKDEEGSVKSPTITI-GIV 260 (500)
T ss_pred ------cccc----cce--eeeeeCCCceEEEEEEEEeecCC-------CCccEEEEEEEEEecCCccccccceEE-EEe
Confidence 0000 000 01135688999998888886431 335667899999999444443333222 112
Q ss_pred cCccCCeEEEEEecCceeEeCCcEEEEEEEE--eCCCCCcccEEEEEEeCCCCCcceEEEecccceeecccCCCCeeEEE
Q 013597 322 TITSKEIELNVVEVPSVVGIDKPFLLKLKLT--NQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFH 399 (439)
Q Consensus 322 ~p~~~dl~l~v~~~P~~v~l~~pF~v~~~v~--N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~ 399 (439)
.....++.++............-..+...+. |.-.... ..++...... ....-.+.......+|.|.+|......
T Consensus 261 ~~~~~~~~is~v~~~p~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~v~~~~-~~~~~~~~~~~~~~ig~l~~g~~~~~~ 337 (500)
T COG1361 261 VVGEPKLDISNVKFDPGVIPLGGVSIEITITIENSGSAPN--QTVRLVTGSP-FTEKSGYTPGEYVAIGNLGPGELATAS 337 (500)
T ss_pred cCCceeEEEEEEEecCCeeccceeEEEEEEEEEecccccc--eEEEEEecCC-cccccCCccceEEEEeccCCCceeeeE
Confidence 3445555555554332222233333444444 4322222 2333322210 000111344455779999999999999
Q ss_pred EEEEecccc---eEEeCc
Q 013597 400 LNLIATKLG---VQRITG 414 (439)
Q Consensus 400 L~l~pl~~G---lq~isg 414 (439)
+++-.-..| -..+|.
T Consensus 338 f~v~~d~~~~~~~~~~Pi 355 (500)
T COG1361 338 FDVKLDEDGISGEYEIPI 355 (500)
T ss_pred EEEEcCccccCCCCcccE
Confidence 988887774 555554
No 66
>PF02752 Arrestin_C: Arrestin (or S-antigen), C-terminal domain; InterPro: IPR011022 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The C-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=24.09 E-value=1.2e+02 Score=25.33 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=22.3
Q ss_pred eeecceEEEEEEEEcCCCcceEEEEEEE
Q 013597 97 IYLGETFCSYISINNSSTLEVRDVVIKA 124 (439)
Q Consensus 97 iylGEtFs~~i~v~N~s~~~v~~V~ika 124 (439)
.+.||+....+.+.|.+...|+.+.++.
T Consensus 16 ~~~Ge~i~v~v~i~n~s~~~i~~I~v~L 43 (136)
T PF02752_consen 16 YVPGETIPVNVEIDNQSKKKIKKIKVSL 43 (136)
T ss_dssp EETT--EEEEEEEEE-SSSEEEEEEEEE
T ss_pred ECCCCEEEEEEEEEECCCCEEEEEEEEE
Confidence 5679999999999999999999987776
No 67
>PRK13201 ureB urease subunit beta; Reviewed
Probab=23.64 E-value=1.7e+02 Score=25.99 Aligned_cols=15 Identities=13% Similarity=0.149 Sum_probs=11.5
Q ss_pred EEEEEEEeCCCCCcc
Q 013597 346 LLKLKLTNQTDKEQG 360 (439)
Q Consensus 346 ~v~~~v~N~s~r~~~ 360 (439)
.++++|+|.-||+..
T Consensus 21 ~~~l~V~NtGDRPIQ 35 (136)
T PRK13201 21 ETVIEVENTGDRPIQ 35 (136)
T ss_pred EEEEEEEeCCCcceE
Confidence 378888899888643
No 68
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=23.55 E-value=2.6e+02 Score=24.44 Aligned_cols=60 Identities=18% Similarity=0.149 Sum_probs=37.1
Q ss_pred eCCcEEEEEEEEeCCCCCcc--cEEEEEEeCCCCCcceEEEecc---------cceeecccCCCCeeEEEEEEEe
Q 013597 341 IDKPFLLKLKLTNQTDKEQG--PFEIWLSQNDSDEEKVVMINGL---------RIMALAPVEAFGSTDFHLNLIA 404 (439)
Q Consensus 341 l~~pF~v~~~v~N~s~r~~~--~l~l~l~~~~~~~~~~~~~~G~---------s~~~Lg~L~P~~s~~~~L~l~p 404 (439)
-...|.++.+|+|.+++.+. .+++.+.... + ..+..=. ....-..|.||++..|.+.+.-
T Consensus 66 ~~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~--g--~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~~ 136 (149)
T PF11906_consen 66 GPGVLVVSGTIRNRADFPQALPALELSLLDAQ--G--QPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLED 136 (149)
T ss_pred CCCEEEEEEEEEeCCCCcccCceEEEEEECCC--C--CEEEEEEEChHHhcccccccccccCCCCeEEEEEEeeC
Confidence 35678899999999887654 3666665543 1 1211100 0001335899999999997763
No 69
>PF03944 Endotoxin_C: delta endotoxin; InterPro: IPR005638 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain (IPR005639 from INTERPRO) involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved C-terminal domain.; PDB: 1DLC_A 1JI6_A 1W99_A 1CIY_A 1I5P_A 2C9K_A 3EB7_A.
Probab=22.99 E-value=1.9e+02 Score=25.44 Aligned_cols=26 Identities=31% Similarity=0.627 Sum_probs=21.8
Q ss_pred eEEEEEEEeccc-ccEEEEeEEeeecC
Q 013597 209 TFLEACIENHTK-SNLYMDQVEFEPSQ 234 (439)
Q Consensus 209 ~~LEaqiqN~s~-~~l~le~v~Lep~~ 234 (439)
..+.+.++|.+. ..+.|++++|-|.+
T Consensus 117 ~~~~i~i~~~~~~~~v~IDkIEFIPv~ 143 (143)
T PF03944_consen 117 ITITISIQNISSNGNVYIDKIEFIPVN 143 (143)
T ss_dssp EEEEEEEESSTTTS-EEEEEEEEEECT
T ss_pred eEEEEEEEecCCCCeEEEEeEEEEeCC
Confidence 667889999987 99999999999864
No 70
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.46 E-value=78 Score=36.90 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=31.2
Q ss_pred EEEecccceeecccCCCCeeEEEEEEEecccceEEeCc
Q 013597 377 VMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITG 414 (439)
Q Consensus 377 ~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl~~Glq~isg 414 (439)
++|+|...... ...+-+...++++++|+.+|--.+.-
T Consensus 1175 ~L~~Gal~ip~-~v~k~~e~~~~fnl~fiv~G~y~~~v 1211 (1235)
T KOG1953|consen 1175 LLLDGALEIPV-CVNKSKEHVVEFNLFFIVTGMYNIFV 1211 (1235)
T ss_pred EEEccccccce-EecchhhheeeeeEEEEecceEEEEE
Confidence 89999887665 56778888889999999999988754
No 71
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=21.92 E-value=6.1e+02 Score=31.41 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=35.8
Q ss_pred EecCceeEeCCcEEEEEEEEeCCCCCcccEEEEEEeCCCCCcceEEEec
Q 013597 333 VEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMING 381 (439)
Q Consensus 333 ~~~P~~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G 381 (439)
+++|-.|+.++-|.+...|.|+-+..++ +.|.+...+ ++.|+.
T Consensus 767 l~lPySV~RgE~i~l~~tv~NYl~k~~~-v~V~l~~~~-----~~~~~~ 809 (1436)
T KOG1366|consen 767 LNLPYSVRRGEQIALRVTVFNYLTKELD-VSVILLSSE-----DFCYDA 809 (1436)
T ss_pred ecCceeEEeCcEeEEeEEEecccCcceE-EEEEEccCC-----Ceeeec
Confidence 3889999999999999999999888887 888887653 566655
No 72
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=21.80 E-value=93 Score=26.07 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=21.9
Q ss_pred EEEEecCceeEeCCcEEEEEEEEeC
Q 013597 330 LNVVEVPSVVGIDKPFLLKLKLTNQ 354 (439)
Q Consensus 330 l~v~~~P~~v~l~~pF~v~~~v~N~ 354 (439)
+.+...|..+..++.|+++|.+.|-
T Consensus 4 V~l~~~p~~~~eG~~~tL~C~v~g~ 28 (100)
T cd05755 4 VELSPLPSWQPVGKNYTLQCDVPGV 28 (100)
T ss_pred EEEecCCCcccCCCcEEEEEEEcCc
Confidence 4566789999999999999999985
No 73
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=21.40 E-value=2.9e+02 Score=22.87 Aligned_cols=69 Identities=12% Similarity=0.009 Sum_probs=38.3
Q ss_pred eEEEEEEEEcCCCcceEEEEEEEEEeCCC-eeEecc--CCCC---CCccccCCCCeeeEEEEEEccccCc-eEEEE
Q 013597 102 TFCSYISINNSSTLEVRDVVIKAEIQTDK-QRILLL--DTSK---SPVESIRAGGRYDFIVEHDVKELGA-HTLVC 170 (439)
Q Consensus 102 tFs~~i~v~N~s~~~v~~V~ikaelqT~s-~r~~L~--~~~~---~~~~~L~pg~~ld~iv~~~lke~G~-h~L~c 170 (439)
-....+.|.|.++.++.--.....|.+.. ...... .... ....+|.||++.+-.+-|++..-.. ..|..
T Consensus 37 fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~vp~~~~~~~l~~ 112 (123)
T PF11611_consen 37 FVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEVPKDDKPYTLEY 112 (123)
T ss_dssp EEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEESTT-GG-EEEE
T ss_pred EEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEECCCCccEEEEE
Confidence 34578889998887765433355666554 222211 1111 1246899999999999999988766 66665
No 74
>PRK13204 ureB urease subunit beta; Reviewed
Probab=21.36 E-value=1.9e+02 Score=26.35 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=14.7
Q ss_pred ccCCCCeeEEEEEEEecccceEEeCce
Q 013597 389 PVEAFGSTDFHLNLIATKLGVQRITGI 415 (439)
Q Consensus 389 ~L~P~~s~~~~L~l~pl~~Glq~isgI 415 (439)
+.+||.+.+|.| +|+ .|-+.|.|+
T Consensus 93 RFEPG~~k~V~L--V~~-gG~r~V~Gf 116 (159)
T PRK13204 93 RFEPGDEKEVTL--VPF-AGKRFIFGF 116 (159)
T ss_pred eECCCCeeEEEE--EEc-cCceEEEcc
Confidence 457787777665 444 366666653
No 75
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=21.00 E-value=3.2e+02 Score=22.96 Aligned_cols=62 Identities=23% Similarity=0.279 Sum_probs=37.4
Q ss_pred eEEEEEEEEcCCCcceEEEEEEEEEeCCCeeEeccCCC---------CCCccccCCCCeeeEEEEEEccccCceEEEEEE
Q 013597 102 TFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTS---------KSPVESIRAGGRYDFIVEHDVKELGAHTLVCTA 172 (439)
Q Consensus 102 tFs~~i~v~N~s~~~v~~V~ikaelqT~s~r~~L~~~~---------~~~~~~L~pg~~ld~iv~~~lke~G~h~L~c~V 172 (439)
.=..|+.+.|.++.+++-+.++.+ ...++.|+.+. ...--.|.||+++.+ +--|.|++...+
T Consensus 15 ~~a~y~ti~N~g~~~~~L~~v~s~---~a~~v~lh~~~~~~g~~~m~~v~~i~ipa~~~v~l------~pgg~HlmL~g~ 85 (110)
T PF04314_consen 15 VTAAYFTITNNGDQDDRLVGVSSP---AAARVELHETVMEDGVMKMRPVDSIPIPAGSTVEL------KPGGYHLMLMGL 85 (110)
T ss_dssp EEEEEEEEE-CSSSEEEEEEEE-T---TCCEEEEEEECCCCCEEEECCSS-EEEETT-EEEE-------CCCCEEEEECE
T ss_pred cEEEEEEEEeCCCCCeEEEEEEcC---CCceEEEEEEEccCCeEEEEECCCEEECCCCeEEe------cCCCEEEEEeCC
Confidence 456899999999999888877764 23344443311 111235778888765 666888887665
No 76
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=20.86 E-value=8.1e+02 Score=24.56 Aligned_cols=79 Identities=10% Similarity=0.076 Sum_probs=51.9
Q ss_pred ceeEeCCcEEEEEEEEeCCCCCcc--cEEEEEEeCCCCCcceEEEecccceeec-ccCCCCeeEEEEEEEe---cccceE
Q 013597 337 SVVGIDKPFLLKLKLTNQTDKEQG--PFEIWLSQNDSDEEKVVMINGLRIMALA-PVEAFGSTDFHLNLIA---TKLGVQ 410 (439)
Q Consensus 337 ~~v~l~~pF~v~~~v~N~s~r~~~--~l~l~l~~~~~~~~~~~~~~G~s~~~Lg-~L~P~~s~~~~L~l~p---l~~Glq 410 (439)
..+..++|..+-+-++|+-+.... -+.=+++.-. ...+++...+.++.+ .++||...+|.+.+.| +.++=.
T Consensus 93 ~~l~aG~~~~~LvgftN~g~~~~~V~~i~aSl~~p~---d~~~~iqNfTa~~y~~~V~pg~~aT~~YsF~~~~~l~pr~f 169 (285)
T PF03896_consen 93 KKLPAGEPVKFLVGFTNKGSEPFTVESIEASLRYPQ---DYSYYIQNFTAVRYNREVPPGEEATFPYSFTPSEELAPRPF 169 (285)
T ss_pred ccccCCCeEEEEEEEEeCCCCCEEEEEEeeeecCcc---ccceEEEeecccccCcccCCCCeEEEEEEEecchhcCCcce
Confidence 446788999999999999554332 0111222111 235677777666544 4899999999999998 666766
Q ss_pred EeCceEEE
Q 013597 411 RITGITVF 418 (439)
Q Consensus 411 ~isgI~l~ 418 (439)
.+..--++
T Consensus 170 ~L~i~l~y 177 (285)
T PF03896_consen 170 GLVINLIY 177 (285)
T ss_pred EEEEEEEE
Confidence 66664444
No 77
>TIGR03517 GldM_gliding gliding motility-associated protein GldM. This protein family, GldM, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile. The best conserved region, toward the N-terminus, is centered on a highly hydrobobic probable transmembrane helix. Two paralogs are found in Cytophaga hutchinsonii.
Probab=20.84 E-value=5.3e+02 Score=28.19 Aligned_cols=81 Identities=14% Similarity=0.174 Sum_probs=51.6
Q ss_pred cccceeecceEEEEEEEEcCCCcceEEEEEEEEEeCCCeeEeccCCCCCCccccCCCCeeeEEEEEEccccCceEEEEEE
Q 013597 93 AFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTA 172 (439)
Q Consensus 93 sfG~iylGEtFs~~i~v~N~s~~~v~~V~ikaelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L~c~V 172 (439)
.-+.+|-||+|.+-|.+...++..-=. +.+.. .++.. .| .-++.+...-+|.|.+.-.+
T Consensus 242 ~s~~v~~Ge~~~a~vvL~a~ds~~~P~-------------~~vnG---~~l~~--~G---~g~~~~~aggvGe~~i~G~i 300 (523)
T TIGR03517 242 KSDAVFAGETYEAEVVLGASDSTLQPT-------------MFVNG---QLLTV--EG---IGVYTFKAGGVGKQTWKGQI 300 (523)
T ss_pred CCceeecCCeEEEEEEEEecCCCcCce-------------EEECC---eEccc--CC---cEEEEEecCCceeEEEEEEE
Confidence 346789999999999888653321111 11210 01110 11 12355555689999999999
Q ss_pred EEEcCCCceeeeceEEEEEeecC
Q 013597 173 LYSDGEGERKYLPQFFKFIVSNP 195 (439)
Q Consensus 173 sY~~~~Ge~~~frK~fkF~v~~P 195 (439)
.|.+ +|+...+.-..+|.|.+|
T Consensus 301 ~~~~-~G~~~~~~~~~~Y~Vi~~ 322 (523)
T TIGR03517 301 KIKE-NGKDTRRSFSEDYFVVKP 322 (523)
T ss_pred EEec-CCcEEEEecceeEEEecc
Confidence 9996 898777766688888753
No 78
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=20.05 E-value=1.6e+02 Score=21.43 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=20.4
Q ss_pred CceeEeCCcEEEEEEEEeCCCCCcc
Q 013597 336 PSVVGIDKPFLLKLKLTNQTDKEQG 360 (439)
Q Consensus 336 P~~v~l~~pF~v~~~v~N~s~r~~~ 360 (439)
+..+.+++.++.++.++|.......
T Consensus 5 ~~~~~~Gd~v~Yti~v~N~g~~~a~ 29 (53)
T TIGR01451 5 KTVATIGDTITYTITVTNNGNVPAT 29 (53)
T ss_pred ccccCCCCEEEEEEEEEECCCCceE
Confidence 4567899999999999999776654
Done!