Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>013598
MEHELAVLQQQERMINVGTVSPFDSASLLPPKKLNLALPNPLYPFISKNAMFVSSPQQTQ
QARLGFKTIHNGLSLLCVSAVKNKWIKGGSEVVESDGSDSDDFDDFDEDDADNDEDEGMM
ISFGKMRRWLENKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLENELLKPSPKK
DEPKKKEPEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPIC
KGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSSSSNSVDGHSSDDTSGYP
KIKVYGFEEDPGAHFDDNEDSYGSVMEALSDGFEPDDELDFAELEEVREDLEFVTVSELN
GSNNTKPAKKSATDSSSANQRKKIQAIEKKLTAKGKVKKVPKLNIPGSAKRLKVKEKAVL
TEVFSKYAVKAASTAKEGN

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  013598
        (439 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2020668 - symbol:AT1G70200 species:3702 "Arabi...   420  2.3e-39   1


>TAIR|locus:2020668 [details] [associations]
            symbol:AT1G70200 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0006364 "rRNA processing"
            evidence=RCA] [GO:0006399 "tRNA metabolic process" evidence=RCA]
            [GO:0009658 "chloroplast organization" evidence=RCA] [GO:0010027
            "thylakoid membrane organization" evidence=RCA] [GO:0045036
            "protein targeting to chloroplast" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
            GO:GO:0009507 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:BT003858 EMBL:BT005155 IPI:IPI00519274 RefSeq:NP_177177.2
            UniGene:At.35335 ProteinModelPortal:Q84JK1 SMR:Q84JK1 STRING:Q84JK1
            PRIDE:Q84JK1 EnsemblPlants:AT1G70200.1 GeneID:843356
            KEGG:ath:AT1G70200 TAIR:At1g70200 HOGENOM:HOG000147060
            InParanoid:Q84JK1 OMA:EENRVDR ProtClustDB:CLSN2918441
            ArrayExpress:Q84JK1 Genevestigator:Q84JK1 Uniprot:Q84JK1
        Length = 538

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 101/246 (41%), Positives = 132/246 (53%)

Query:   125 KMRRWLENKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLENXXXXXXXXXXXXX 184
             KM++WLE KPRGFG GK Y+T IEDKLL EI+QS +AQ AN+NKL+N             
Sbjct:   116 KMKKWLEKKPRGFGLGKKYETLIEDKLLDEIEQSWKAQAANLNKLKNDPLKSQQLKRDDN 175

Query:   185 XXXXXXMPS-GIRVRLLNLPKKKNIHRDLKSAFKXXXXXXXXXXXXXXXKKTKDPICKGF 243
                       G RVR+ NLPKKKN+HRDLK AFK               KKTKDP+CKGF
Sbjct:   176 LLKGTGETQIGFRVRVTNLPKKKNVHRDLKVAFKEVSGVLSITPAVSGNKKTKDPVCKGF 235

Query:   244 AFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMXXXXXXXXXXXXXXXXTSGYP--K 301
             A VDF++E  A RFV+ F+ Q +AFGKV KQI+C++                 +G+   K
Sbjct:   236 AHVDFKTEIDANRFVKQFTGQSLAFGKVIKQIKCQVVEFTSDDSVSKEVYLD-NGFKVQK 294

Query:   302 IKVYGFEEDPGAHFDDNEDSYGSVMEALSDGFEPDD-ELDFAELEEVREDLEFVTVSELN 360
             +   G E D  A   + E   GS  E+     E D+ E++  E   +   +E   + E+ 
Sbjct:   295 LPYSGLEGDSSADVVEEEVLLGSGEESDDSEEEVDEREVEDDERNHISSSIESSPI-EMT 353

Query:   361 GSNNTK 366
               +NTK
Sbjct:   354 RDSNTK 359

 Score = 117 (46.2 bits), Expect = 0.00056, P = 0.00056
 Identities = 38/120 (31%), Positives = 50/120 (41%)

Query:   316 DDNEDSYGSVMEALSDGFEPDDELDFAELEEVREDLEFVTVSELNGSNNTKPAKKSATDS 375
             DD E+     +E L+      +E     +  + + L         G    KP  K A   
Sbjct:   419 DDEEEVAEDNLEPLNSSLSSSEENRVDRIRRLEQKLLGKEKLLGGGVGFDKPEAKPARVE 478

Query:   376 SSANQRKKIQAIEXXXXXXXXXXXXXXXNIPGSAKRLKVKEKAVLTEVFSKYAVKAASTA 435
                 ++KK   I                 IPGS+KRLKVKEKA+LT V  KYA K AST+
Sbjct:   479 GKKKEKKKKTKI----LVKGQAKKGTKIEIPGSSKRLKVKEKALLTGVLVKYAAKVASTS 534


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.131   0.365    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      439       325   0.00087  116 3  11 23  0.43    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  200 KB (2113 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.13u 0.13s 23.26t   Elapsed:  00:00:01
  Total cpu time:  23.13u 0.13s 23.26t   Elapsed:  00:00:01
  Start:  Sat May 11 06:28:11 2013   End:  Sat May 11 06:28:12 2013

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