BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013598
(439 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A8WLV5|EIF3G_CAEBR Eukaryotic translation initiation factor 3 subunit G
OS=Caenorhabditis briggsae GN=eif-3.G.1 PE=3 SV=2
Length = 261
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 197 VRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATR 256
R+ NLP++ N +L+ F + +I I ++ +K T P KGFAFV FES D A R
Sbjct: 183 CRVTNLPQEMN-EDELRDVFGRIGRVIRIF--IARDKITGLP--KGFAFVTFESRDDAAR 237
Query: 257 FV 258
+
Sbjct: 238 AI 239
>sp|Q0CMB0|ROK1_ASPTN ATP-dependent RNA helicase rok1 OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=rok1 PE=3 SV=2
Length = 749
Score = 36.6 bits (83), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 64 LGFKTIHNGLSLLCVSAVKNKWIKGGSEVVESDG-SDSDDFDDFDEDDADNDED 116
L + ++ G L+ + VK +K G +VVE DG DSD+ D DED AD+ D
Sbjct: 296 LASQIVNEGRKLVQGTGVKITLMKKGMQVVERDGDGDSDEKDVLDEDSADSGSD 349
>sp|Q19706|EIF3G_CAEEL Eukaryotic translation initiation factor 3 subunit G
OS=Caenorhabditis elegans GN=eif-3.G PE=3 SV=1
Length = 256
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 197 VRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATR 256
R+ NLP++ N +L+ F + +I I ++ +K T P KGFAFV FES D A R
Sbjct: 178 CRVTNLPQEMN-EDELRDLFGKIGRVIRIF--IARDKVTGLP--KGFAFVTFESRDDAAR 232
Query: 257 FV 258
+
Sbjct: 233 AI 234
>sp|Q640E9|WIBG_XENLA Partner of Y14 and mago OS=Xenopus laevis GN=wibg PE=2 SV=1
Length = 199
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 343 ELEEVREDLEFVTVSELNGSNNTKPAKK---SATDSSSANQRKKIQAIEKKL 391
++EE R+DLE V +S+ N A K +++D+S+A + KKI+ + KKL
Sbjct: 105 QVEETRQDLERVNISDTPVQKNVTSAHKNGSASSDNSAAEKAKKIKNLRKKL 156
>sp|Q7KNF2|PABP2_DROME Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2
PE=2 SV=1
Length = 224
Score = 33.1 bits (74), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 19/124 (15%)
Query: 145 TSIEDKLLQEIQQSREAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPK 204
T +E++ +I EA A + ++E E K + E K+ +G+ L+L +
Sbjct: 30 TEVEEEGSMQIDPELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLATVPLSLEE 89
Query: 205 KKNI---------------HRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFE 249
K+ I +L++ F G G IN + ++ NK P KGFA+++F
Sbjct: 90 KQEIDTRSVYVGNVDYGASAEELEAHFHGC-GTINRVTILC-NKADGHP--KGFAYIEFG 145
Query: 250 SEDY 253
S+++
Sbjct: 146 SKEF 149
>sp|A4IGK4|RBM5_XENTR RNA-binding protein 5 OS=Xenopus tropicalis GN=rbm5 PE=2 SV=1
Length = 838
Score = 32.3 bits (72), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 195 IRVRLLNLPKKKNIHRDLKSAFKG-VPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDY 253
I +R L + +N R+L +F+G P + ++ K K + +GFAFV+F
Sbjct: 105 IMLRGLPININENDIRELVESFEGPQPADVRLM-------KRKTGLSRGFAFVEFYHLQD 157
Query: 254 ATRFVQLFSRQIIAFGKV 271
ATR+++ ++++ GK
Sbjct: 158 ATRWMEANQKKLVIQGKT 175
>sp|Q28G87|LARP7_XENTR La-related protein 7 OS=Xenopus tropicalis GN=larp7 PE=2 SV=1
Length = 593
Score = 32.3 bits (72), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 183 PKKKEPEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKG 242
P ++P+D+ S R + L K H ++ F G G++ + + K T DP KG
Sbjct: 116 PLGEKPQDVDS--RTVYVELLPKNVTHSWIERVF-GKYGMVVYVSI-PRYKSTGDP--KG 169
Query: 243 FAFVDFESEDYATRFVQLFS 262
FAF++FE+++ A + +++ +
Sbjct: 170 FAFIEFETQEQAAKAIEVLN 189
>sp|Q6DDU9|RBM5B_XENLA RNA-binding protein 5-B OS=Xenopus laevis GN=rbm5-b PE=2 SV=1
Length = 749
Score = 32.0 bits (71), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 195 IRVRLLNLPKKKNIHRDLKSAFKG-VPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDY 253
I +R L + +N R+L +F+G P + ++ K K + +GFAFV+F
Sbjct: 104 IMLRGLPININENDIRELVESFEGPQPADVRLM-------KRKTGLSRGFAFVEFYHLQD 156
Query: 254 ATRFVQLFSRQIIAFGKV 271
ATR+++ ++++ GK
Sbjct: 157 ATRWMEANQKKLVIQGKT 174
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.130 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 169,537,576
Number of Sequences: 539616
Number of extensions: 7770812
Number of successful extensions: 40757
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 260
Number of HSP's that attempted gapping in prelim test: 37303
Number of HSP's gapped (non-prelim): 2427
length of query: 439
length of database: 191,569,459
effective HSP length: 121
effective length of query: 318
effective length of database: 126,275,923
effective search space: 40155743514
effective search space used: 40155743514
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)