Query 013599
Match_columns 439
No_of_seqs 224 out of 2020
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 05:29:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013599.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013599hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 4.7E-50 1E-54 389.9 48.4 390 47-439 12-424 (455)
2 PRK10189 MATE family multidrug 100.0 1.4E-45 3.1E-50 361.8 50.1 387 50-439 27-443 (478)
3 PRK10367 DNA-damage-inducible 100.0 1.8E-45 4E-50 357.8 49.0 388 49-439 6-412 (441)
4 PRK00187 multidrug efflux prot 100.0 4.1E-45 8.9E-50 358.5 50.4 389 48-439 6-425 (464)
5 PRK09575 vmrA multidrug efflux 100.0 7.9E-45 1.7E-49 356.0 46.9 389 49-439 9-417 (453)
6 PRK01766 multidrug efflux prot 100.0 2.9E-43 6.2E-48 346.5 49.6 392 45-439 5-423 (456)
7 TIGR00797 matE putative efflux 100.0 7E-37 1.5E-41 290.5 44.1 337 60-399 1-341 (342)
8 KOG1347 Uncharacterized membra 100.0 2.9E-34 6.3E-39 276.9 36.5 395 44-439 20-433 (473)
9 TIGR01695 mviN integral membra 100.0 5E-32 1.1E-36 270.6 44.9 378 54-439 2-409 (502)
10 TIGR02900 spore_V_B stage V sp 100.0 8.1E-32 1.8E-36 268.2 41.5 377 55-439 2-415 (488)
11 PRK15099 O-antigen translocase 100.0 2.7E-30 5.8E-35 251.5 41.4 370 54-439 3-393 (416)
12 PF03023 MVIN: MviN-like prote 100.0 5.7E-24 1.2E-28 207.4 43.7 348 82-436 5-381 (451)
13 COG0728 MviN Uncharacterized m 99.9 1.1E-21 2.5E-26 188.2 46.0 381 51-435 6-414 (518)
14 PRK10459 colanic acid exporter 99.9 3.1E-22 6.6E-27 199.4 40.5 341 51-416 4-347 (492)
15 COG2244 RfbX Membrane protein 99.9 3.5E-21 7.7E-26 191.2 35.4 370 50-437 4-391 (480)
16 PRK00187 multidrug efflux prot 99.9 6.4E-21 1.4E-25 187.5 27.3 206 47-253 231-443 (464)
17 COG0534 NorM Na+-driven multid 99.9 3E-20 6.5E-25 181.3 26.0 210 43-254 232-443 (455)
18 PRK10189 MATE family multidrug 99.9 7.2E-20 1.6E-24 180.2 28.4 211 47-258 254-466 (478)
19 PRK01766 multidrug efflux prot 99.9 3.2E-20 6.9E-25 183.0 25.7 206 47-253 234-441 (456)
20 PRK09575 vmrA multidrug efflux 99.9 2.6E-19 5.7E-24 175.8 26.6 205 47-254 229-436 (453)
21 TIGR01695 mviN integral membra 99.8 8.1E-18 1.7E-22 168.2 32.3 204 49-254 220-428 (502)
22 PF01943 Polysacc_synt: Polysa 99.8 8.2E-16 1.8E-20 140.9 33.3 271 55-341 2-273 (273)
23 PRK10367 DNA-damage-inducible 99.8 1.1E-16 2.5E-21 156.1 25.9 199 48-253 228-430 (441)
24 PF03023 MVIN: MviN-like prote 99.8 8.4E-16 1.8E-20 150.2 31.2 204 49-254 195-403 (451)
25 TIGR02900 spore_V_B stage V sp 99.8 2.6E-16 5.7E-21 156.8 25.4 202 47-253 220-433 (488)
26 PF01554 MatE: MatE; InterPro 99.7 3.4E-18 7.4E-23 143.9 6.2 160 60-220 1-162 (162)
27 PRK10459 colanic acid exporter 99.7 2.7E-14 5.9E-19 142.4 34.5 200 48-253 203-404 (492)
28 COG0728 MviN Uncharacterized m 99.7 4.5E-14 9.8E-19 136.2 34.4 205 49-255 229-438 (518)
29 PRK15099 O-antigen translocase 99.7 1.3E-14 2.9E-19 141.3 25.8 199 47-252 210-410 (416)
30 PF13440 Polysacc_synt_3: Poly 99.6 1.7E-12 3.7E-17 117.4 32.0 247 71-340 3-251 (251)
31 COG2244 RfbX Membrane protein 99.6 2E-13 4.3E-18 135.8 26.6 187 47-239 208-396 (480)
32 PF01554 MatE: MatE; InterPro 99.5 6.3E-14 1.4E-18 117.9 7.0 135 280-416 1-135 (162)
33 TIGR00797 matE putative efflux 99.5 4.1E-12 8.9E-17 120.6 18.9 135 280-416 1-135 (342)
34 PF07260 ANKH: Progressive ank 99.1 6.6E-07 1.4E-11 79.6 29.2 311 50-372 9-343 (345)
35 PF04506 Rft-1: Rft protein; 99.0 7.2E-07 1.6E-11 88.4 28.5 360 56-416 5-408 (549)
36 KOG1347 Uncharacterized membra 99.0 2.1E-09 4.6E-14 104.7 9.9 204 48-252 243-450 (473)
37 KOG2864 Nuclear division RFT1 98.7 8E-05 1.7E-09 69.7 29.4 359 51-416 7-388 (530)
38 PF14667 Polysacc_synt_C: Poly 98.5 1.6E-05 3.4E-10 65.2 17.8 79 174-254 2-80 (146)
39 PF04506 Rft-1: Rft protein; 98.5 2.5E-05 5.3E-10 77.7 22.0 203 51-254 252-470 (549)
40 KOG2864 Nuclear division RFT1 98.0 0.0023 5E-08 60.2 21.1 200 52-253 239-448 (530)
41 PF01943 Polysacc_synt: Polysa 97.5 0.00089 1.9E-08 60.9 10.0 71 48-119 201-272 (273)
42 PF07260 ANKH: Progressive ank 97.1 0.071 1.5E-06 48.3 17.4 143 268-416 7-152 (345)
43 PF13440 Polysacc_synt_3: Poly 96.6 0.015 3.2E-07 52.2 9.5 66 53-118 184-250 (251)
44 COG4267 Predicted membrane pro 95.4 2.3 4.9E-05 39.8 31.8 264 101-386 73-359 (467)
45 COG4267 Predicted membrane pro 70.3 1E+02 0.0022 29.4 12.8 117 126-249 320-437 (467)
46 PF04505 Dispanin: Interferon- 67.1 35 0.00077 24.5 6.7 38 329-366 36-73 (82)
47 KOG0569 Permease of the major 45.7 3.2E+02 0.0068 27.4 11.4 35 196-232 399-433 (485)
48 PF03609 EII-Sor: PTS system s 38.6 2.8E+02 0.0062 24.6 15.8 65 318-382 105-170 (238)
49 PRK03612 spermidine synthase; 35.3 4.9E+02 0.011 26.3 23.4 28 60-87 22-50 (521)
50 PF06808 DctM: DctM-like trans 29.7 5.4E+02 0.012 25.1 18.8 31 341-371 256-286 (416)
51 PF10997 DUF2837: Protein of u 29.3 3.3E+02 0.0072 24.4 7.7 73 311-383 24-96 (254)
52 PRK10739 putative antibiotic t 28.9 3.8E+02 0.0081 23.1 9.1 66 335-404 22-88 (197)
53 PF02592 DUF165: Uncharacteriz 28.1 3.2E+02 0.0069 22.0 12.7 100 112-218 13-116 (145)
54 PF05975 EcsB: Bacterial ABC t 24.8 6.3E+02 0.014 24.3 16.3 35 124-158 89-124 (386)
55 TIGR00427 membrane protein, Ma 24.6 4.5E+02 0.0099 22.6 8.9 65 335-403 25-90 (201)
56 PF02487 CLN3: CLN3 protein; 23.9 6.8E+02 0.015 24.3 16.4 50 46-95 237-291 (402)
57 PF10160 Tmemb_40: Predicted m 21.8 5.9E+02 0.013 22.9 8.3 77 320-398 85-161 (261)
58 PF05313 Pox_P21: Poxvirus P21 20.7 5.2E+02 0.011 21.8 7.6 27 228-254 135-161 (189)
59 TIGR00822 EII-Sor PTS system, 20.2 6.6E+02 0.014 22.8 15.3 34 322-355 109-142 (265)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=4.7e-50 Score=389.91 Aligned_cols=390 Identities=21% Similarity=0.307 Sum_probs=362.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccchh
Q 013599 47 FWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYY 126 (439)
Q Consensus 47 ~~~~~~~~l~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 126 (439)
.++..|+++++++|.++++++..+++.+|+.++||+|++++++.++++++..+ ...+..|++.+..+.+||++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~-~~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFL-IIAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHcCCchH
Confidence 55689999999999999999999999999999999999999999999999999 88899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHHHH
Q 013599 127 MLGVYMQRSWIVLFICCVLLLP-LYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAW 205 (439)
Q Consensus 127 ~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 205 (439)
++++..++++.++++++++..+ .+.+.++++.+++.++++.+.+.+|+++..++.|+..++.++.+++|+.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 9999999999999999966655 899999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh-cC-CCcchHHHHHHHHHHHHHHHHHHHHhhcC--CCCccCCCChHhHhhHHHHHHHHHHH
Q 013599 206 VSLASLLVHLLVTWLFVYK-MQ-LGLIGTAITLSFSWWVLIFGMFGYVACGG--CPRTWTGFSMEAFSDLWEFVKLSVAS 281 (439)
Q Consensus 206 ~~~~~~~~~i~~~~~li~~-~~-~gi~g~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~p~ 281 (439)
.++++.++|+++|+++++. ++ +|+.|+++||.+++++..++..+++++++ ......+..+.+++.+|++++.|+|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999997 57 99999999999999999999999998874 23333444456678999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q 013599 282 GVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNGKGARFATIVSVVTSI 361 (439)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~i~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~~ 361 (439)
++++..+...+...+.+.+++| +.++|+|+++.++.++.++++.+++++.+|.+++++|++|.|++|+..+.+..+++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 56899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH--------------HHHHHHH---H
Q 013599 362 AIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSDSC--------------FCYVNLF---L 424 (439)
Q Consensus 362 ~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l--------------~~~~~i~---~ 424 (439)
.+++..+.+++++++++.++|++|+|+.+.+...+++..+.+++++.+.+..+++ .++|.+. .
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~ 408 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA 408 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999999999999999999999999999999999999999 3344432 3
Q ss_pred HHHhhC-CCcceeccC
Q 013599 425 KGWLWD-RDGNRLWHT 439 (439)
Q Consensus 425 l~~~~~-~g~~G~w~~ 439 (439)
+.+.+. +|..|+|++
T Consensus 409 ~~l~~~~~g~~Gvw~~ 424 (455)
T COG0534 409 YLLGFFFLGLAGVWIG 424 (455)
T ss_pred HHHhhhcccchHHHHH
Confidence 333444 999999974
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=1.4e-45 Score=361.82 Aligned_cols=387 Identities=14% Similarity=0.159 Sum_probs=347.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccchhhHH
Q 013599 50 ESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLG 129 (439)
Q Consensus 50 ~~~~~l~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~ 129 (439)
..|+++++++|.++++++..+...+|+.+++++|++++++++++.++..+ ...+..|++++..++++|++|+||+|+++
T Consensus 27 ~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~-~~~~~~gl~~g~~~lvsq~~Ga~~~~~~~ 105 (478)
T PRK10189 27 FWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMV-IMAFFAAIDLGTTVVVAFSLGKRDRRRAR 105 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 48999999999999999999999999999999999999999999999888 78899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcC--CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHHHHH
Q 013599 130 VYMQRSWIVLFICCVLLLP-LYVFASPVLKLLG--QPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWV 206 (439)
Q Consensus 130 ~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 206 (439)
+..++++.+++.++++.++ .+.+.++++.++. .|+++.+.+.+|+++..++.|+..+...+++++|+.||++.++..
T Consensus 106 ~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i 185 (478)
T PRK10189 106 AAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLI 185 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHH
Confidence 9999999999999987766 6778889999884 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhc----CCCcchHHHHHHHHHHHHHHHHHHHHhhc-C--CCCccCC-CChHhHhhHHHHHHHH
Q 013599 207 SLASLLVHLLVTWLFVYKM----QLGLIGTAITLSFSWWVLIFGMFGYVACG-G--CPRTWTG-FSMEAFSDLWEFVKLS 278 (439)
Q Consensus 207 ~~~~~~~~i~~~~~li~~~----~~gi~g~~~a~~~~~~~~~~~~~~~~~~~-~--~~~~~~~-~~~~~~~~~~~l~~~~ 278 (439)
+++..++|+++++++++.+ ++|+.|+++|+.+++++..++..+++.++ + .+.++++ +.+.+++.+|++++.|
T Consensus 186 ~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iG 265 (478)
T PRK10189 186 NGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGIG 265 (478)
T ss_pred HHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHHh
Confidence 9999999999999999743 68999999999999999888776665543 2 2222222 2223567899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 013599 279 VASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNGKGARFATIVSVV 358 (439)
Q Consensus 279 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~i~~~~~p~i~~~~g~~~~~~~~~~~~~~~~ 358 (439)
+|.+++.........+.+.+++++| +.++|+|+++.++.++..++..|++++.+|.+++++|++|.+++|+..+.+.+
T Consensus 266 ~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~~ 343 (478)
T PRK10189 266 IPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVFW 343 (478)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999988888888888888888 56899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH--------HHHHH------HH-
Q 013599 359 TSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSDSC--------FCYVN------LF- 423 (439)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l--------~~~~~------i~- 423 (439)
+++.++..++++++++++++.++|++|+|+.+.+...+++.++..++++.+.+..+++ .++++ +.
T Consensus 344 ~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~i 423 (478)
T PRK10189 344 LSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCRV 423 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 33333 22
Q ss_pred ----HHHHhhCCCcceeccC
Q 013599 424 ----LKGWLWDRDGNRLWHT 439 (439)
Q Consensus 424 ----~l~~~~~~g~~G~w~~ 439 (439)
++....++|+.|+|++
T Consensus 424 p~~~ll~~~~~~g~~Gvw~~ 443 (478)
T PRK10189 424 VAGYILGIMLGFGVVGVWMG 443 (478)
T ss_pred HHHHHHHHHhCCCHHHHHHH
Confidence 3334457999999984
No 3
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=1.8e-45 Score=357.77 Aligned_cols=388 Identities=14% Similarity=0.117 Sum_probs=338.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccchhh
Q 013599 49 IESKKLWHIVGPTIFSRMASYSMFVITQAFAGHL-GDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYM 127 (439)
Q Consensus 49 ~~~~~~l~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 127 (439)
++.|+++++++|.++++++..++..+|+.+++++ |++++++++++.++..+ ...+..+++.+..+.+||++|+||+|+
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~-~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSF-LFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 4688999999999999999999999999999998 77899999999999998 778889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHHHHH
Q 013599 128 LGVYMQRSWIVLFICCVLLLP-LYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWV 206 (439)
Q Consensus 128 ~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 206 (439)
+++..++++.+++++++++.+ ...+.++++.+++.+++..+.+.+|+++..++.|+..+..++++++|+.||++.+++.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 999999999999999887765 5778888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhc-CCC-CccCCCChHhHhhHHHHHHHHHHHHHH
Q 013599 207 SLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG-GCP-RTWTGFSMEAFSDLWEFVKLSVASGVM 284 (439)
Q Consensus 207 ~~~~~~~~i~~~~~li~~~~~gi~g~~~a~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~l~~~~~p~~~~ 284 (439)
++++.++|+++++++++.+++|+.|+++|+.+++++..++..++++++ +.+ .+.+.++...++.+|++++.|.|.+++
T Consensus 165 ~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~ 244 (441)
T PRK10367 165 LVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIMLR 244 (441)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHHH
Confidence 999999999999999998889999999999999999888877776654 222 111112211124689999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHH
Q 013599 285 LCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNGKGARFATIVSVVTSIAIG 364 (439)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~i~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~ 364 (439)
+..+...+.+.+.+++++| +.++|+|+++.++.++.++++.|++++.+|.+++++|++|.|++|+..+++.+++..++
T Consensus 245 ~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~ 322 (441)
T PRK10367 245 SLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVA 322 (441)
T ss_pred HHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 45899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhhhh----hhhHH-------HHHHHHH----HHHHhh
Q 013599 365 VFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPV----LSDSC-------FCYVNLF----LKGWLW 429 (439)
Q Consensus 365 ~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~l-------~~~~~i~----~l~~~~ 429 (439)
.+.+++++.+++++..+|++|+|+.+.+...+++.++..+..+.... +++.+ ....++. .....+
T Consensus 323 ~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~~~~ 402 (441)
T PRK10367 323 LLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLLTLP 402 (441)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998765333223333 33333 2333333 123345
Q ss_pred CCCcceeccC
Q 013599 430 DRDGNRLWHT 439 (439)
Q Consensus 430 ~~g~~G~w~~ 439 (439)
++|+.|+|++
T Consensus 403 ~~g~~Gvw~a 412 (441)
T PRK10367 403 WLGNHGLWLA 412 (441)
T ss_pred HcCchHHHHH
Confidence 7899999984
No 4
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=4.1e-45 Score=358.52 Aligned_cols=389 Identities=19% Similarity=0.234 Sum_probs=346.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccchhh
Q 013599 48 WIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYM 127 (439)
Q Consensus 48 ~~~~~~~l~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 127 (439)
++..|+++++++|.+++++...+...+|+.+++|+|++++++++++.++.++ ...+..|++++..+.+||++|++|+++
T Consensus 6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~-~~~~~~gl~~~~~~i~aq~~Ga~~~~~ 84 (464)
T PRK00187 6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSF-VSIFCVGVIAAVGTLVAIRHGAGDIEG 84 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCChhh
Confidence 4579999999999999999999999999999999999999999999999998 677889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHHHHHH
Q 013599 128 LGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVS 207 (439)
Q Consensus 128 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 207 (439)
+++.++.++.+.++++++..++..+.++++..++.|+|..+.+.+|+++..++.++..+....++++|+.||++.+++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ 164 (464)
T PRK00187 85 ATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVIS 164 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999999999988776655577999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc----CCCcchHHHHHHHHHHHHHHHHHHHHhhcC-C-CCcc-CCCChHhHhhHHHHHHHHHH
Q 013599 208 LASLLVHLLVTWLFVYKM----QLGLIGTAITLSFSWWVLIFGMFGYVACGG-C-PRTW-TGFSMEAFSDLWEFVKLSVA 280 (439)
Q Consensus 208 ~~~~~~~i~~~~~li~~~----~~gi~g~~~a~~~~~~~~~~~~~~~~~~~~-~-~~~~-~~~~~~~~~~~~~l~~~~~p 280 (439)
+++.++|+++++++++.. ++|+.|+++|+.+++....+...+++++++ . +.+. ++..+.+++.+|++++.++|
T Consensus 165 ~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P 244 (464)
T PRK00187 165 LAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLP 244 (464)
T ss_pred HHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhh
Confidence 999999999999999742 379999999999999888776666665442 1 1221 12223456788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 013599 281 SGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNGKGARFATIVSVVTS 360 (439)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~i~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~ 360 (439)
.++++..+...+.+++.+++++| +.+++++++++++..+..++..+++++..+.++|++|++|.|++++..+.+..++
T Consensus 245 ~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~ 322 (464)
T PRK00187 245 IGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFG 322 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 4589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHhhhcCC--cH---HHHHHHHHHHHHHHHHHHHhhhhhhhhhHH--------------HHH--
Q 013599 361 IAIGVFFFILILIFHNELALIFSS--SE---AILQVVSKMSILLAFTILLNSVQPVLSDSC--------------FCY-- 419 (439)
Q Consensus 361 ~~~~~~~~~~~~~~~~~i~~~f~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l--------------~~~-- 419 (439)
++++++.+++++++++++.++|++ |+ |+.+.+..++++.++..++++++.++.+++ .+.
T Consensus 323 ~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~ 402 (464)
T PRK00187 323 AVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWL 402 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHH
Confidence 999999999999999999999964 43 688899999999999999999999999999 222
Q ss_pred HHHH---HHHHhhCCCcceeccC
Q 013599 420 VNLF---LKGWLWDRDGNRLWHT 439 (439)
Q Consensus 420 ~~i~---~l~~~~~~g~~G~w~~ 439 (439)
++++ ++.+.+++|+.|+|++
T Consensus 403 ~~ipl~~ll~~~~~~g~~Gvw~~ 425 (464)
T PRK00187 403 VGAPLAWLLAFTLGWGAVGVWWG 425 (464)
T ss_pred HHHHHHHHHHhccCCCceeeHHH
Confidence 2333 3444567999999974
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=7.9e-45 Score=355.99 Aligned_cols=389 Identities=16% Similarity=0.163 Sum_probs=350.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccchhh
Q 013599 49 IESKKLWHIVGPTIFSRMASYSMFVITQAFAGHL-GDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYM 127 (439)
Q Consensus 49 ~~~~~~l~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 127 (439)
+..|+++++++|..++++...++..+|+.+++++ |++++++++++.++..+ ...+..+++.+..++++|++|+||+|+
T Consensus 9 ~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~-~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 87 (453)
T PRK09575 9 SIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGI-ILGIGLMVGMGTGSLLSIKRGEGDLEK 87 (453)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHhcCCCHHH
Confidence 4689999999999999999999999999999995 99999999999999998 677888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHHHHH
Q 013599 128 LGVYMQRSWIVLFICCVLLLP-LYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWV 206 (439)
Q Consensus 128 ~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 206 (439)
+++.+++++.++++++++..+ ...+.++++.+++.+++..+.+.+|+++..++.++..+.....+.+|+.||++.++..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 167 (453)
T PRK09575 88 AKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGL 167 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 999999999999999987766 6788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCCCccC-CCChHhHhhHHHHHHHHHHHHHHH
Q 013599 207 SLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWT-GFSMEAFSDLWEFVKLSVASGVML 285 (439)
Q Consensus 207 ~~~~~~~~i~~~~~li~~~~~gi~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~p~~~~~ 285 (439)
++++.++|++++++++..+++|+.|+++++.+++++..++..+++++++.+.+++ +..+.+++.+|++++.|.|.+++.
T Consensus 168 ~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~ 247 (453)
T PRK09575 168 MVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFMY 247 (453)
T ss_pred HHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHHH
Confidence 9999999999999999877899999999999999999988777776553222221 112345677899999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHH
Q 013599 286 CLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNGKGARFATIVSVVTSIAIGV 365 (439)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~i~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 365 (439)
....+.+.+.+.+.+++|+ +.++|+|+++.++..+..++..+++++..|.+++++|+||.|++|+..+.+..+++..+.
T Consensus 248 ~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~~ 326 (453)
T PRK09575 248 LYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAGI 326 (453)
T ss_pred HHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 9999999998999988885 347899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHhhhcCC-cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH--------HH-------HHHHH-HHHHh
Q 013599 366 FFFILILIFHNELALIFSS-SEAILQVVSKMSILLAFTILLNSVQPVLSDSC--------FC-------YVNLF-LKGWL 428 (439)
Q Consensus 366 ~~~~~~~~~~~~i~~~f~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l--------~~-------~~~i~-~l~~~ 428 (439)
+.+++++.+++++.++|++ |+|+.+.+.+.+++.+++.++++++.+..+++ .. .++++ .+.+.
T Consensus 327 ~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~ip~~~ll~ 406 (453)
T PRK09575 327 AWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGNMLIQLPFLFILP 406 (453)
T ss_pred HHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999995 78999999999999999999999999999988 11 23344 44445
Q ss_pred hCCCcceeccC
Q 013599 429 WDRDGNRLWHT 439 (439)
Q Consensus 429 ~~~g~~G~w~~ 439 (439)
+.+|+.|+|++
T Consensus 407 ~~~G~~Gvw~a 417 (453)
T PRK09575 407 KWLGVDGVWLA 417 (453)
T ss_pred HHHCcchHhhH
Confidence 55899999984
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=2.9e-43 Score=346.53 Aligned_cols=392 Identities=20% Similarity=0.362 Sum_probs=350.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccc
Q 013599 45 RRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKK 124 (439)
Q Consensus 45 ~~~~~~~~~~l~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~ 124 (439)
++.++..|+++++++|..++++...+...+|+.+++++|++++++++++.++... ...+..|++.+..+.+|+++|++|
T Consensus 5 ~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~-~~~~~~g~~~a~~~~vs~~~g~~~ 83 (456)
T PRK01766 5 QKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLP-VILFGHGLLLALTPIVAQLNGAGR 83 (456)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4456789999999999999999999999999999999999999999999998777 677889999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHH
Q 013599 125 YYMLGVYMQRSWIVLFICCVLLLP-LYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVI 203 (439)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 203 (439)
++++++.+++++.+.+.+++++.+ .+.+.++++.+++.+++..+.+..|+++.+++.++..+...+++++++.||++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 163 (456)
T PRK01766 84 RERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPT 163 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 999999999999999999987766 5677788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh----cCCCcchHHHHHHHHHHHHHHHHHHHHhhcC-CC--CccCCCChHhHhhHHHHHH
Q 013599 204 AWVSLASLLVHLLVTWLFVYK----MQLGLIGTAITLSFSWWVLIFGMFGYVACGG-CP--RTWTGFSMEAFSDLWEFVK 276 (439)
Q Consensus 204 ~~~~~~~~~~~i~~~~~li~~----~~~gi~g~~~a~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~l~~ 276 (439)
++.++++.++|++++++++.. .++|+.|+++++.+++++..++..+++++++ .+ ..+++..+++++..|++++
T Consensus 164 ~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~ 243 (456)
T PRK01766 164 MVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLK 243 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHH
Confidence 999999999999999999853 2469999999999999999998887776542 11 1122222345577899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 013599 277 LSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNGKGARFATIVS 356 (439)
Q Consensus 277 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~i~~~~~p~i~~~~g~~~~~~~~~~~~~~ 356 (439)
.++|..++...+...+.+++.+++++| +.++++++++.++.++..+++.+++.+..+.+++++|++|.+++|+..+.+
T Consensus 244 l~~P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~ 321 (456)
T PRK01766 244 LGLPIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIG 321 (456)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999999999999999999999999988 457899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH--------------HHH--H
Q 013599 357 VVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSDSC--------------FCY--V 420 (439)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l--------------~~~--~ 420 (439)
..+++.++++.+++++.+++++.++|++|+|+.+.+..++++..+..++++++.+.++++ .+. +
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~ 401 (456)
T PRK01766 322 LAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVL 401 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999 222 2
Q ss_pred HHH---HHHHhhCCCcceeccC
Q 013599 421 NLF---LKGWLWDRDGNRLWHT 439 (439)
Q Consensus 421 ~i~---~l~~~~~~g~~G~w~~ 439 (439)
+++ .+.+.+++|..|+|++
T Consensus 402 ~i~~~~~l~~~~~~G~~G~~~~ 423 (456)
T PRK01766 402 GLPLGYILALTDPMGPFGFWIG 423 (456)
T ss_pred HHHHHHHHHhccCCCceehHHH
Confidence 233 3344567999999985
No 7
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=7e-37 Score=290.47 Aligned_cols=337 Identities=25% Similarity=0.479 Sum_probs=306.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccchhhHHHHHHHHHHHH
Q 013599 60 PTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVL 139 (439)
Q Consensus 60 p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 139 (439)
|.++++++..+...+|+.+++++|++++++++++.++..+ ...+..|++++..+.+++++|++|+|++++..++.+.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~-~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMF-LFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHH-HHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 7789999999999999999999999999999999998887 788899999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Q 013599 140 FICCVLLLP-LYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVT 218 (439)
Q Consensus 140 ~~~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 218 (439)
..++++..+ ++++.+++..+++.+++..+++..++++..++.++..+.....+.+++.||++.....++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 999987766 6778889988888788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-hcC-CCcchHHHHHHHHHHHHHHHHHHHHhhc-CCCCccCCCChHhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013599 219 WLFVY-KMQ-LGLIGTAITLSFSWWVLIFGMFGYVACG-GCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVL 295 (439)
Q Consensus 219 ~~li~-~~~-~gi~g~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~ 295 (439)
++++. .++ +|+.|+++++.+++++..++..++.+++ +.+.+++...+.+++..|+++++++|..++.....+...++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 98887 667 7899999999999999988887777653 33333323233445788999999999999999999999999
Q ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013599 296 ILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNGKGARFATIVSVVTSIAIGVFFFILILIFH 375 (439)
Q Consensus 296 ~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~i~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (439)
+.+++.+| +.++++|+++.++.++..+++.+++++..|.++++++++|.+++++..+++.++.+.++++.+.++++++
T Consensus 240 ~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887 4588999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCcHHHHHHHHHHHHHH
Q 013599 376 NELALIFSSSEAILQVVSKMSILL 399 (439)
Q Consensus 376 ~~i~~~f~~~~~~~~~~~~~l~~~ 399 (439)
+++.++|++|+++.+++...+++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999998888764
No 8
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=2.9e-34 Score=276.93 Aligned_cols=395 Identities=41% Similarity=0.691 Sum_probs=372.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccc
Q 013599 44 TRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGK 123 (439)
Q Consensus 44 ~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~ 123 (439)
++...++.|++++++.|.++....+.....+++.++||+|+.++++.+++++..+.....+..|+..+..+.++|++|.+
T Consensus 20 ~~~~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~ 99 (473)
T KOG1347|consen 20 FSQLVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAK 99 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccc
Confidence 33447789999999999999999999999999999999999999999999999998788999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHH
Q 013599 124 KYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVI 203 (439)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 203 (439)
+++....+.+++.......+++....+...++++..++++++....+..|.++..+..+..........++|++++....
T Consensus 100 ~~~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~ 179 (473)
T KOG1347|consen 100 KFTALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPL 179 (473)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCChHhHhhHHHHHHHHHHHHH
Q 013599 204 AWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGV 283 (439)
Q Consensus 204 ~~~~~~~~~~~i~~~~~li~~~~~gi~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~ 283 (439)
.+......++++.+++++++..++|..|++++..+++++.......+.+.......|..+..+ ++.++++++.++|.++
T Consensus 180 ~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~-~~~~~~~~~lai~s~~ 258 (473)
T KOG1347|consen 180 LVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE-FDSWGPFFALAIPSAV 258 (473)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-hhhHHHHHHHhhcchh
Confidence 999999999999999999999999999999999999999999998888776666677777777 8999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHH
Q 013599 284 MLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNGKGARFATIVSVVTSIAI 363 (439)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~i~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 363 (439)
+...+++.+.+...+.+.+++++.++++.++..++....++++.+++.+...++++.+|++|.+++|...+.....++.+
T Consensus 259 miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~ 338 (473)
T KOG1347|consen 259 MICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAI 338 (473)
T ss_pred eeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH--------HHHHHHH-----------H
Q 013599 364 GVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSDSC--------FCYVNLF-----------L 424 (439)
Q Consensus 364 ~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l--------~~~~~i~-----------~ 424 (439)
+...+..++.+++.+..+|++|+|+.+...+..++++...++++.+.++.|+. ++++|++ .
T Consensus 339 g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~ 418 (473)
T KOG1347|consen 339 GASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLY 418 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeE
Confidence 99999999999999999999999999999999999999999999999999987 4455544 5
Q ss_pred HHHhhCCCcceeccC
Q 013599 425 KGWLWDRDGNRLWHT 439 (439)
Q Consensus 425 l~~~~~~g~~G~w~~ 439 (439)
+.+..++|..|+|.+
T Consensus 419 l~~~~~~g~~glw~G 433 (473)
T KOG1347|consen 419 LGFFTKFGVKGLWIG 433 (473)
T ss_pred EEEEEecCceEEEee
Confidence 666678999999974
No 9
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=5e-32 Score=270.59 Aligned_cols=378 Identities=15% Similarity=0.078 Sum_probs=309.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHH-hHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhhhcccchhhHHH
Q 013599 54 LWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLEL-AAISIANTVVVAFNFGLL-LGMASALETLCGQAFGGKKYYMLGV 130 (439)
Q Consensus 54 ~l~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~-~~~~~~~~~~~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~~~ 130 (439)
+.|.+.-..+++++..+.+++|..+++| +|++++ ++++++.++...+..... .|++++..+...++.+++ |++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5688888999999999999999999999 799999 899999999876333333 468888777776653332 67777
Q ss_pred HHHHHHHHHHHHH-HHHHH-HHHhhHHHHHHc--CCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHHHHH
Q 013599 131 YMQRSWIVLFICC-VLLLP-LYVFASPVLKLL--GQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWV 206 (439)
Q Consensus 131 ~~~~~~~~~~~~~-i~~~~-~~~~~~~l~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 206 (439)
.+.+........+ ++..+ .+.+.+++..++ +.+++..+.+.+|+++..++.++..+....++++|+.||.+.++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 7777666555444 34444 667777777777 4466777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcchHH--HHHHHHHHHHHHHHHHHHhhcCCCCccCCCChHhHhhHHHHHHHHHHHHHH
Q 013599 207 SLASLLVHLLVTWLFVYKMQLGLIGTA--ITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVM 284 (439)
Q Consensus 207 ~~~~~~~~i~~~~~li~~~~~gi~g~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~ 284 (439)
+++.++++++...++. .++|..|++ +++.++..+..++..++.+|++.+.+. ++ ..+++..|++++.+.|..++
T Consensus 160 ~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~k~~l~~~~p~~~~ 235 (502)
T TIGR01695 160 PILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKP-RF-NFRDPGLKRFLKLFLPTTLG 235 (502)
T ss_pred HHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccC-cC-CCCChhHHHHHHHHHHHHHH
Confidence 9999887766443333 467999988 999999999888877776654322111 11 12346788999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHH
Q 013599 285 LCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWEL-MIPLSFFAGTGVRVSNELGAGNGKGARFATIVSVVTSIAI 363 (439)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~-~~~~~i~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 363 (439)
.....+...+++.+.+.+++ .++++|+.+.++.++.. .+..+++++..|.+++++|++|.+++|+..+++.++...+
T Consensus 236 ~~~~~~~~~id~~~~~~~~~--~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (502)
T TIGR01695 236 SSASQITLLINTALASFLEI--GSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLL 313 (502)
T ss_pred HHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999988777663 47889999999999876 4688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHhhhcCC----cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH---------------HHHHHHH-
Q 013599 364 GVFFFILILIFHNELALIFSS----SEAILQVVSKMSILLAFTILLNSVQPVLSDSC---------------FCYVNLF- 423 (439)
Q Consensus 364 ~~~~~~~~~~~~~~i~~~f~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l---------------~~~~~i~- 423 (439)
+++.+++++.+++++.++|.+ |+|..+.+..+++++++..++.+++.++.+.+ ...+|++
T Consensus 314 ~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~i~i~l 393 (502)
T TIGR01695 314 TIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISVVLNALL 393 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHHHHHHHH
Confidence 999999999999999999876 55778889999999999999999999999988 3344555
Q ss_pred HHHHhhCCCcceeccC
Q 013599 424 LKGWLWDRDGNRLWHT 439 (439)
Q Consensus 424 ~l~~~~~~g~~G~w~~ 439 (439)
.+.+.+.+|..|+|++
T Consensus 394 ~~~l~~~~G~~G~~~a 409 (502)
T TIGR01695 394 SLLLIFPLGLVGIALA 409 (502)
T ss_pred HHHHHHHHhhhHHHHH
Confidence 5566678999999974
No 10
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=8.1e-32 Score=268.17 Aligned_cols=377 Identities=12% Similarity=0.115 Sum_probs=307.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccchhhHHHHHH
Q 013599 55 WHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQ 133 (439)
Q Consensus 55 l~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~ 133 (439)
.|.+.|.+++++...+..++|+.+++| +|++++|+++.+.++..++......|++++..+.++++.+++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 467899999999999999999999999 7999999999999998884454557999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHH
Q 013599 134 RSWIVLFICCVLLLP-LYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLL 212 (439)
Q Consensus 134 ~~~~~~~~~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 212 (439)
.++.+.+..+++..+ ...+.+++...+..+++. ..++++..+..++..+.....+.+|+.+|.+..+..++++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 999999999887766 556666666656555543 246788888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc-----CCCcchHHHHHHHHHHHHHHHHHHHHhhc-CC--CCccCCCChHhHhhHHHHHHHHHHHHHH
Q 013599 213 VHLLVTWLFVYKM-----QLGLIGTAITLSFSWWVLIFGMFGYVACG-GC--PRTWTGFSMEAFSDLWEFVKLSVASGVM 284 (439)
Q Consensus 213 ~~i~~~~~li~~~-----~~gi~g~~~a~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~l~~~~~p~~~~ 284 (439)
+++.+...++..+ +.|+.|+++++.+++.+..+....+.+++ +. +.++.+.++.+++..|+++++++|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 9887766655421 24677888999999988888776665543 21 2222222233456889999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCc-----hh---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 013599 285 LCLENWYYRVLILMTGNLQN-----AK---IAVDAL-SICMSINGWELMIPLSFFAGTGVRVSNELGAGNGKGARFATIV 355 (439)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~-----~~---~~va~~-~~~~~i~~~~~~~~~~i~~~~~p~i~~~~g~~~~~~~~~~~~~ 355 (439)
+....+...+|+.++++... .. ..++.| +.+.++.++...+..+++++..|.+++++|++|.+++++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999888865321 11 223333 4667788888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH---------------HHHH
Q 013599 356 SVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSDSC---------------FCYV 420 (439)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l---------------~~~~ 420 (439)
..++...++.+.++++..+++++..+|.++++ +...++++++..++.+++....+++ ...+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~ 393 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGAIV 393 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999876543 5678899999999999999988887 3455
Q ss_pred HHH-HHHHh--hCCCcceeccC
Q 013599 421 NLF-LKGWL--WDRDGNRLWHT 439 (439)
Q Consensus 421 ~i~-~l~~~--~~~g~~G~w~~ 439 (439)
|++ .+.+. +.+|..|+|++
T Consensus 394 ~i~l~~~l~~~~~~G~~Gaaia 415 (488)
T TIGR02900 394 KIILLFVLTSIPSINIYGYAIT 415 (488)
T ss_pred HHHHHHHHHhccccccHHHHHH
Confidence 555 44444 88999999974
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=2.7e-30 Score=251.46 Aligned_cols=370 Identities=10% Similarity=-0.023 Sum_probs=299.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccchhhHHHHH
Q 013599 54 LWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYM 132 (439)
Q Consensus 54 ~l~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~ 132 (439)
+.|.+.....+.++..+..++...++.| +|++++|.++..+++...+......|++++..+.++|+ ++|+++.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 5678888889999999999999999999 79999999999999998745555888888888899988 67888999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHHHHHHHHHH
Q 013599 133 QRSWIVLFICCVLLLP-LYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASL 211 (439)
Q Consensus 133 ~~~~~~~~~~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 211 (439)
+.++.+.+..++++++ ++.+.+++...+..+++. ..++.+..+..++..+.....+.+|+.||++.++...+++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987766 677888888877666642 24566666666677888899999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhc-CCCCccCCCChHhHhhHHHHHHHHHHHHHHHHHHHH
Q 013599 212 LVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG-GCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENW 290 (439)
Q Consensus 212 ~~~i~~~~~li~~~~~gi~g~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~ 290 (439)
++|+.+ +++.... .|+.|+++++.+++.+..+...++++|+ +.+.++.+. +.+++..|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKP-SWDNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhc-cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999877 4444332 3999999999999999887777666654 222211112 23456788999999999999999999
Q ss_pred HHHHHHHHHh-cCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 013599 291 YYRVLILMTG-NLQNAKIAVDALSICMSINGW-ELMIPLSFFAGTGVRVSNELGAGNGKGARFATIVSVVTSIAIGVFFF 368 (439)
Q Consensus 291 ~~~~~~~~~~-~~~~~~~~va~~~~~~~i~~~-~~~~~~~i~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (439)
....++.+++ .+| +.++|+|+.+.|+.+. ...+..+++++.+|.++++ +|.++.++..++..++...++.+.+
T Consensus 234 ~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999986 666 4599999999999885 5899999999999999995 6788999999999999999999999
Q ss_pred HHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH---------------HHHHHHH-HHHHhhCCC
Q 013599 369 ILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSDSC---------------FCYVNLF-LKGWLWDRD 432 (439)
Q Consensus 369 ~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l---------------~~~~~i~-~l~~~~~~g 432 (439)
++++++++++.++|.+|+ ++.+.+++++++++.++...+..+...+ ....+++ .+.+++.+|
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~i~l~~~li~~~G 386 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQFTLLTGFAHWLIPLHG 386 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999998876 4556778888777777766655444333 2223333 667788999
Q ss_pred cceeccC
Q 013599 433 GNRLWHT 439 (439)
Q Consensus 433 ~~G~w~~ 439 (439)
..|++++
T Consensus 387 ~~G~a~a 393 (416)
T PRK15099 387 ALGAAQA 393 (416)
T ss_pred hHHHHHH
Confidence 9999874
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.95 E-value=5.7e-24 Score=207.44 Aligned_cols=348 Identities=16% Similarity=0.111 Sum_probs=292.5
Q ss_pred cChH-HHhHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHH
Q 013599 82 LGDL-ELAAISIANTVVVAFNFGLL-LGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLP-LYVFASPVLK 158 (439)
Q Consensus 82 lg~~-~~~~~~~~~~~~~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~ 158 (439)
+|.. +..+|.++.++..++...+. .++.++..|..++.. ++++|+.++..+.........++.+++ ..++++++..
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5654 67799999999998444454 458999999999998 888999999999988887777766665 6788888888
Q ss_pred Hc--CCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhhcCCC---cchHH
Q 013599 159 LL--GQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLG---LIGTA 233 (439)
Q Consensus 159 ~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g---i~g~~ 233 (439)
.+ +.+++..+.+...+++..+..++..+..++.+++++++|...+....++.++..++..+++... .| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~--~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSNS--WGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHh--cCchHHHHHH
Confidence 77 5577889999999999999999999999999999999999999999998887765544444433 36 88999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCccCCCChHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Q 013599 234 ITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALS 313 (439)
Q Consensus 234 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~ 313 (439)
++..++.++..++.+...+|...+.+.+ ++.+ .+..|++++...|..+.....++...+++.+.+.+++| ++++++
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G--~vs~l~ 237 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRPK-FDWR-DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEG--SVSALN 237 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCccccc-CCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHHH
Confidence 9999999999999888888764442221 1111 24578999999999999999999999999999998854 778999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcC----CcHHH
Q 013599 314 ICMSINGWEL-MIPLSFFAGTGVRVSNELGAGNGKGARFATIVSVVTSIAIGVFFFILILIFHNELALIFS----SSEAI 388 (439)
Q Consensus 314 ~~~~i~~~~~-~~~~~i~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~----~~~~~ 388 (439)
.+.++.+++. .+..+++++..|.+++...++|.++.++..++..+..+.+.+|.++++..+++++.+++. -|+|.
T Consensus 238 YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~ 317 (451)
T PF03023_consen 238 YAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAED 317 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHH
Confidence 9999999987 778899999999999999999999999999999999999999999999999999999964 25666
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHH---------------HHHHHHH-HHHHhhCCCccee
Q 013599 389 LQVVSKMSILLAFTILLNSVQPVLSDSC---------------FCYVNLF-LKGWLWDRDGNRL 436 (439)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l---------------~~~~~i~-~l~~~~~~g~~G~ 436 (439)
.+....++++++++.++.+++..+...+ +...|+. ...+.+.+|..|+
T Consensus 318 ~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~~~~g~~Gl 381 (451)
T PF03023_consen 318 TQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISVVLNIILSILLVPFFGVAGL 381 (451)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999998 3344444 5555677787775
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.94 E-value=1.1e-21 Score=188.25 Aligned_cols=381 Identities=10% Similarity=0.020 Sum_probs=308.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChH-HHhHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHhhhcccchhh
Q 013599 51 SKKLWHIVGPTIFSRMASYSMFVITQAFAGH-LGDL-ELAAISIANTVVVAFNFGLLLG-MASALETLCGQAFGGKKYYM 127 (439)
Q Consensus 51 ~~~~l~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~-~~~~~~~~~~~~~~~~~~~~~g-l~~~~~~~~s~~~g~~~~~~ 127 (439)
.++++|.+.-....++++.+.+++-..+++. +|+. ...++.++.++.+++--.+..| ++++..|...++..++++|+
T Consensus 6 ~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~ 85 (518)
T COG0728 6 KMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEA 85 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhH
Confidence 3466677777777888888888888888998 7884 6779999999999855556655 68999999999988887788
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHc-CC--CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHH
Q 013599 128 LGVYMQRSWIVLFICCVLLLP-LYVFASPVLKLL-GQ--PDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVI 203 (439)
Q Consensus 128 ~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~-~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 203 (439)
.++...........+.+..++ ..++.+.+.... .. +++....+....++..+..++.++.....+.+++.+|...+
T Consensus 86 ~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~ 165 (518)
T COG0728 86 ARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIP 165 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechh
Confidence 877777777555555555555 555666666344 32 23333357778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCChHhHhhHHHHHHHHHHHHH
Q 013599 204 AWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGV 283 (439)
Q Consensus 204 ~~~~~~~~~~~i~~~~~li~~~~~gi~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~ 283 (439)
....+..++.-+...+.+.+....-..+.+++..++-+++.++.+..++|.+...+.+. ..++ +.+|++.+.-.|..+
T Consensus 166 a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~-~~~~-~~lk~~~~~~~p~~l 243 (518)
T COG0728 166 AFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRF-GFKD-PGLKRFLKLMLPALL 243 (518)
T ss_pred hhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCC-CCCc-hhHHHHHHHHHHHHH
Confidence 99999988877755555555432236788899999999999999999988743322221 1111 567899999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 013599 284 MLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWEL-MIPLSFFAGTGVRVSNELGAGNGKGARFATIVSVVTSIA 362 (439)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~-~~~~~i~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~ 362 (439)
.....+++..+++.+.+.+.++ +++.++.+.++.+++. .+..+++++..|.+++...++|.++.++..+.++++++.
T Consensus 244 ~~sisQi~lli~~~iAS~l~~G--sis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~ll 321 (518)
T COG0728 244 GVSISQINLLIDTAIASFLAEG--SVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLL 321 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhccc--cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999854 6779999999999988 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHhhhcCC----cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH---------------HHHHHHH
Q 013599 363 IGVFFFILILIFHNELALIFSS----SEAILQVVSKMSILLAFTILLNSVQPVLSDSC---------------FCYVNLF 423 (439)
Q Consensus 363 ~~~~~~~~~~~~~~~i~~~f~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l---------------~~~~~i~ 423 (439)
+++|.++++.++++++.++..+ +++......+.+..++++.++..+..++...+ +...|+.
T Consensus 322 l~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~ 401 (518)
T COG0728 322 LTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISLVVNIL 401 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHHHHHHH
Confidence 9999999999999999999622 45568889999999999999999999999988 4455555
Q ss_pred -HHHHhhCCCcce
Q 013599 424 -LKGWLWDRDGNR 435 (439)
Q Consensus 424 -~l~~~~~~g~~G 435 (439)
.+.+.+.+|..|
T Consensus 402 l~~~l~~~~~~~g 414 (518)
T COG0728 402 LNLLLIPPLGHVG 414 (518)
T ss_pred HHHHHHhhccchH
Confidence 555566666655
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.93 E-value=3.1e-22 Score=199.35 Aligned_cols=341 Identities=7% Similarity=0.042 Sum_probs=265.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccchhhHH
Q 013599 51 SKKLWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLG 129 (439)
Q Consensus 51 ~~~~l~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~ 129 (439)
.++..+-+....++++...+..++...+++| +|++++|.++.++.+..++......|++++.. |. +|.+ +
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~---~~~~--~ 74 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR---QDIS--H 74 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc---ccCC--H
Confidence 4567788888999999999999999999999 79999999999999999866667778877643 21 1111 2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHHHHHHH
Q 013599 130 VYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSL 208 (439)
Q Consensus 130 ~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 208 (439)
+.....+...+..++++.++ +.+.+++...+ ++++. ...+++..+..++..+.......++..+|.+.....++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFY-HNPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CChhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 33455566666666655554 44444444443 44433 34667777777888888889999999999999999888
Q ss_pred HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCChHhHhhHHHHHHHHHHHHHHHHHH
Q 013599 209 ASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLE 288 (439)
Q Consensus 209 ~~~~~~i~~~~~li~~~~~gi~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~ 288 (439)
...++..+....+.. .++|..+.+++..++..+..+......++ +.+.++ ..+++..|++++++.|...++...
T Consensus 150 ~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~----~~~~~~~k~ll~~~~~~~~~~~~~ 223 (492)
T PRK10459 150 SAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRK-IYRPAL----HFSLASVKPNLSFGAWQTAERIIN 223 (492)
T ss_pred HHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhcc-cCCccc----eecHHHHHHHHhhhHHHHHHHHHH
Confidence 888777766665554 46799999999999888776654333322 222211 112356789999999999999999
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHH
Q 013599 289 NWYYRVLILMTGNLQNAKIAVDALSICMSINGWEL-MIPLSFFAGTGVRVSNELGAGNGKGARFATIVSVVTSIAIGVFF 367 (439)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~-~~~~~i~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (439)
.+..++|+.+++.+.+ +.++|.|+.+.++.+++. .+...++++..|.+++. ++|.++.++.+++..++...+++|+
T Consensus 224 ~~~~~~d~~~lg~~lg-~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~ 300 (492)
T PRK10459 224 YLNTNIDTILIGRILG-AEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPL 300 (492)
T ss_pred HHHhcCchhhhhHhhc-hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888765 458999999999998755 55666889999999886 5788999999999999999999999
Q ss_pred HHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 013599 368 FILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSDSC 416 (439)
Q Consensus 368 ~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 416 (439)
++++.++++++..++.+|+ ...+...++++++..++..+.......+
T Consensus 301 ~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l 347 (492)
T PRK10459 301 LLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLL 347 (492)
T ss_pred HHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987765 6778899999999999998888888777
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.91 E-value=3.5e-21 Score=191.25 Aligned_cols=370 Identities=14% Similarity=0.077 Sum_probs=282.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccchhhH
Q 013599 50 ESKKLWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYML 128 (439)
Q Consensus 50 ~~~~~l~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 128 (439)
..+++.|.+.....+++...+..++....++| +|++++|.++.+.++..++......|+..+....++++..++++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~ 83 (480)
T COG2244 4 LKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLL 83 (480)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHH
Confidence 46788888999999999999999999999999 79999999999999999866767799999999999998766665555
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHHHHHH
Q 013599 129 GVY-MQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVS 207 (439)
Q Consensus 129 ~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 207 (439)
+.. ...........+++.........+. .+.....+++..+..++........+.+|+.++.+......
T Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (480)
T COG2244 84 ILLSVLLLLLLALILLLLLLLIAYLLAPI----------DPVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSI 153 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc----------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence 554 4444444444433333322222222 12234457788888999999999999999999999999884
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCChHhHhhHHHHHHHHHHHHHHHHH
Q 013599 208 LASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCL 287 (439)
Q Consensus 208 ~~~~~~~i~~~~~li~~~~~gi~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~ 287 (439)
+.. ..-......+.. .......++...+..........+.++++.+...... ...++..|++++.++|..+.+..
T Consensus 154 ~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~p~~~~~~~ 228 (480)
T COG2244 154 VSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPIL-RFSLALLKELLRFGLPLLLSSLL 228 (480)
T ss_pred HHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc-CchhHHHHHHHHHhhHHHHHHHH
Confidence 444 111112222221 2445556666666666555555555322111111111 11357888999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHH
Q 013599 288 ENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNGKGARFATIVSVVTSIAIGVFF 367 (439)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~i~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (439)
..+..++|+.+++.+.+ +.++|.|+.+.++......+..+++++..|.+++.+.++|.++.++..++..++...++.|.
T Consensus 229 ~~l~~~~D~~~i~~~l~-~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 307 (480)
T COG2244 229 NFLFTNIDTLLLGLFLG-PAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPA 307 (480)
T ss_pred HHHHHHHHHHHHHHHhh-hhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998875 56899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH---------------HHHHHHH-HHHHhhCC
Q 013599 368 FILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSDSC---------------FCYVNLF-LKGWLWDR 431 (439)
Q Consensus 368 ~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l---------------~~~~~i~-~l~~~~~~ 431 (439)
.+++..+++++..++.+++ ...+...+.++++..++.++....+..+ ++..|+. ++.+++.+
T Consensus 308 ~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~~~l~~~li~~~ 385 (480)
T COG2244 308 LLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISALLNLILNLLLIPRF 385 (480)
T ss_pred HHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHhHHHHhh
Confidence 9999999999999987766 3347888999999999999999988877 3345555 66677877
Q ss_pred Ccceec
Q 013599 432 DGNRLW 437 (439)
Q Consensus 432 g~~G~w 437 (439)
|..|..
T Consensus 386 g~~g~~ 391 (480)
T COG2244 386 GLIGAA 391 (480)
T ss_pred hhhhHH
Confidence 777653
No 16
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.89 E-value=6.4e-21 Score=187.50 Aligned_cols=206 Identities=16% Similarity=0.177 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccchh
Q 013599 47 FWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYY 126 (439)
Q Consensus 47 ~~~~~~~~l~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 126 (439)
.++..|++++.++|..++++.......+|+.+++++|++++++++++.++..+ ...+..|++++..++++|++|+||+|
T Consensus 231 ~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l-~~~~~~gi~~a~~~lvgq~~Ga~~~~ 309 (464)
T PRK00187 231 SRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSV-AFMVPVGLSYAVTMRVGQHYGAGRLL 309 (464)
T ss_pred CHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 45679999999999999999999999999999999999999999999999998 88899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCC--CH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCch
Q 013599 127 MLGVYMQRSWIVLFICCVLLLP-LYVFASPVLKLLGQ--PD---DVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKT 200 (439)
Q Consensus 127 ~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~ 200 (439)
++++..+.++.++...+++..+ ++.+.+++.+.+.. ++ ++.+.+..|+++.+++.++..++.++.+.+|+.||+
T Consensus 310 ~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~ 389 (464)
T PRK00187 310 EARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDA 389 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCcc
Confidence 9999999999999999987766 67788899988853 33 688889999999999999999999999999999999
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHhh
Q 013599 201 MVIAWVSLASL-LVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVAC 253 (439)
Q Consensus 201 ~~~~~~~~~~~-~~~i~~~~~li~~~~~gi~g~~~a~~~~~~~~~~~~~~~~~~ 253 (439)
+.++..+++.. ++++++++++.+.+++|+.|+++++.+++.+..+.....+++
T Consensus 390 ~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 390 RTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999986 899999999998778999999999999999988777666644
No 17
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.87 E-value=3e-20 Score=181.27 Aligned_cols=210 Identities=21% Similarity=0.257 Sum_probs=195.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 013599 43 LTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGG 122 (439)
Q Consensus 43 ~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~ 122 (439)
.++..++..|++++.++|..++++.......+.+.+++++|++.+|+++++.++.++ ...+..|++++.++++++++|+
T Consensus 232 ~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~-~~~~~~gi~~a~~~lvG~~~Ga 310 (455)
T COG0534 232 LLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASF-IFMPPFGIAQAVTILVGQNLGA 310 (455)
T ss_pred ccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCC
Confidence 334456799999999999999999999999999999999999999999999999999 8899999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchh
Q 013599 123 KKYYMLGVYMQRSWIVLFICCVLLLP-LYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTM 201 (439)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~ 201 (439)
||+|++++..+.+..++..+++...+ ++++.+++..+|..++++.+.+..++++..+..++..++.+..+++||.||++
T Consensus 311 ~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~ 390 (455)
T COG0534 311 GNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAK 390 (455)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence 99999999999999999999987765 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhc
Q 013599 202 VIAWVSLAS-LLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG 254 (439)
Q Consensus 202 ~~~~~~~~~-~~~~i~~~~~li~~~~~gi~g~~~a~~~~~~~~~~~~~~~~~~~ 254 (439)
.++..++.+ ..+.+++.+++.... +|..|.|++...++.+..+...++++++
T Consensus 391 ~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~ 443 (455)
T COG0534 391 IPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRG 443 (455)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998 566788888887764 7999999999999999999998888765
No 18
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.87 E-value=7.2e-20 Score=180.18 Aligned_cols=211 Identities=14% Similarity=0.097 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccchh
Q 013599 47 FWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYY 126 (439)
Q Consensus 47 ~~~~~~~~l~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 126 (439)
.++..|++++.++|..++.....+...+.+.+++++|++++++++++.++.++ ...+..|++++.++++++++|++|.+
T Consensus 254 ~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~-~~~~~~gi~~A~~~lvg~~~Ga~~~~ 332 (478)
T PRK10189 254 NFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAAL-INLPGNALGSASTIITGTRLGKGQIA 332 (478)
T ss_pred CHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 45689999999999999999999999999999999999999999999999999 78899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHHHH
Q 013599 127 MLGVYMQRSWIVLFICCVLLLP-LYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAW 205 (439)
Q Consensus 127 ~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 205 (439)
++++..+.+..++...++.+.+ .+.+.+++..+|..|+++.+.+..++++.++..++..++.+..+.+||.||++.++.
T Consensus 333 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~ 412 (478)
T PRK10189 333 QAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMW 412 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHH
Confidence 9999999999999999877766 678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 013599 206 VSLAS-LLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPR 258 (439)
Q Consensus 206 ~~~~~-~~~~i~~~~~li~~~~~gi~g~~~a~~~~~~~~~~~~~~~~~~~~~~~ 258 (439)
+++.. .++.+++.+++....++|+.|.+++..+++.+..++..+.+++.++++
T Consensus 413 i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~ 466 (478)
T PRK10189 413 VSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLW 466 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 99988 577788888877766889999999999999999988887776554443
No 19
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.87 E-value=3.2e-20 Score=182.96 Aligned_cols=206 Identities=20% Similarity=0.202 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccchh
Q 013599 47 FWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYY 126 (439)
Q Consensus 47 ~~~~~~~~l~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 126 (439)
.++..|++++.++|..++.........++..+++++|++++++++++.++.++ ...+..|++.+.++.++|++|+||++
T Consensus 234 ~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~-~~~~~~gl~~a~~~~v~~~~Ga~~~~ 312 (456)
T PRK01766 234 DWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSL-LFMLPLSLAMALTIRVGFELGAGRTL 312 (456)
T ss_pred CHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 35578999999999999999999999999999999999999999999999998 77889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHHHH
Q 013599 127 MLGVYMQRSWIVLFICCVLLLP-LYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAW 205 (439)
Q Consensus 127 ~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 205 (439)
++++..+.++.++..++++..+ ++.+.+++..++..|+++.+.+..++++..++.++..++.+..+.++|.||++.++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~ 392 (456)
T PRK01766 313 DARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFF 392 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHH
Confidence 9999999999999999987765 778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHhh
Q 013599 206 VSLASL-LVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVAC 253 (439)
Q Consensus 206 ~~~~~~-~~~i~~~~~li~~~~~gi~g~~~a~~~~~~~~~~~~~~~~~~ 253 (439)
.++++. ++++++.+++....++|+.|+++++.+++++..++..+++++
T Consensus 393 ~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
T PRK01766 393 ITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRK 441 (456)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence 999986 789999998887777899999999999999999888777654
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.85 E-value=2.6e-19 Score=175.78 Aligned_cols=205 Identities=14% Similarity=0.195 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh-HHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccch
Q 013599 47 FWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGD-LELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKY 125 (439)
Q Consensus 47 ~~~~~~~~l~~~~p~~~~~~~~~~~~~i~~~~i~~lg~-~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 125 (439)
.++..|++++.++|..++.....+...+.+.+++++|+ +++++++++.++..+ ...+..|++.+.++.++|++|+||+
T Consensus 229 ~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~-~~~~~~gi~~a~~~lvg~~~Ga~~~ 307 (453)
T PRK09575 229 NWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVL-YYLVAEGIAEGMQPPVSYYFGARQY 307 (453)
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHhcCCCh
Confidence 45678999999999999999999999999999999985 689999999999998 7889999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCC-CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHH
Q 013599 126 YMLGVYMQRSWIVLFICCVLLLP-LYVFASPVLKLLGQ-PDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVI 203 (439)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 203 (439)
|++++..+.++.+++..+++..+ +..+.+++..+|.. |+++.+.+..|+++..++.++..+..+..+++||.||++.+
T Consensus 308 ~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~ 387 (453)
T PRK09575 308 DNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKA 387 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 99999999999999999988776 67789999999985 78899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhc
Q 013599 204 AWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG 254 (439)
Q Consensus 204 ~~~~~~~~~~~i~~~~~li~~~~~gi~g~~~a~~~~~~~~~~~~~~~~~~~ 254 (439)
+..++...+++++..+++... +|+.|+|+++.+++++..++....++++
T Consensus 388 ~~~~~~~~~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~~ 436 (453)
T PRK09575 388 LFISIGNMLIQLPFLFILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWRD 436 (453)
T ss_pred HHHHHHhHHHHHHHHHHHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHHH
Confidence 999998888888888887653 5999999999999999888877766653
No 21
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.84 E-value=8.1e-18 Score=168.24 Aligned_cols=204 Identities=16% Similarity=0.144 Sum_probs=184.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccchhhH
Q 013599 49 IESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYML 128 (439)
Q Consensus 49 ~~~~~~l~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 128 (439)
+..|++++.+.|..+++....+...+|+.+.+.+|++++++|+.+.++..+....+..+++++..|.++++++++|++++
T Consensus 220 ~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~ 299 (502)
T TIGR01695 220 PGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNEL 299 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 46899999999999999999999999998866689999999999999998734456789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCC----CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHH
Q 013599 129 GVYMQRSWIVLFICCVLLLP-LYVFASPVLKLLGQ----PDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVI 203 (439)
Q Consensus 129 ~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 203 (439)
++..+++......++++..+ +..+++++...+.. +++..+.+..++++.+++.++..+.....+.+++.||++.+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~ 379 (502)
T TIGR01695 300 RDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTP 379 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccC
Confidence 99999999999999988876 67889999988765 45677888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhc
Q 013599 204 AWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG 254 (439)
Q Consensus 204 ~~~~~~~~~~~i~~~~~li~~~~~gi~g~~~a~~~~~~~~~~~~~~~~~~~ 254 (439)
++.++...++|+++++++++. +|+.|+++++.+++.+..++..++.+|+
T Consensus 380 ~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 380 FINSVISVVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998875 4999999999999999998888777653
No 22
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.79 E-value=8.2e-16 Score=140.92 Aligned_cols=271 Identities=18% Similarity=0.158 Sum_probs=205.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccchhhHHHHHH
Q 013599 55 WHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQ 133 (439)
Q Consensus 55 l~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~ 133 (439)
+|.+......++...+..++...++.| +|++++|.++....+..++......|++++.....++...+ +++.++...
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 577788889999999999999999999 79999999999999999855666899999998888887433 445555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHH
Q 013599 134 RSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLV 213 (439)
Q Consensus 134 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 213 (439)
......++.+++......... .+..++ ... .+........++.........++++.++.+.....++...+.
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~~----~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIAS----FFGNPS-LSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL 151 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HcCCch-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444444443333222222 333332 211 122222222257788888999999999999999999999888
Q ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCChHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013599 214 HLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYR 293 (439)
Q Consensus 214 ~i~~~~~li~~~~~gi~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~ 293 (439)
..+....++.. +.+..+..++..++..+..++...+.+|+. +.++ ...+++..|++++.+.|..+......+...
T Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (273)
T PF01943_consen 152 SLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKL-RPRF---SFFSKKFFKEILRFGLPLFLSSLLSWLYSQ 226 (273)
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccc---cccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87766666654 345888999999999888888888777643 1222 222256788999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013599 294 VLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNEL 341 (439)
Q Consensus 294 ~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~i~~~~~p~i~~~~ 341 (439)
.|..+++.+.+ ..++|.|+++.++......+..++.++..|.+++.+
T Consensus 227 ~d~~ii~~~~g-~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l~ 273 (273)
T PF01943_consen 227 IDRLIIGYFLG-PEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRLW 273 (273)
T ss_pred hHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999876 458999999999999999999999999999999863
No 23
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.78 E-value=1.1e-16 Score=156.05 Aligned_cols=199 Identities=16% Similarity=0.118 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccchhh
Q 013599 48 WIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYM 127 (439)
Q Consensus 48 ~~~~~~~l~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 127 (439)
++..|++++.+.|..+++........+.+.+++++|++++++++++.++.++ ...+..|++++.+++++|++|+||.|+
T Consensus 228 ~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~-~~~~~~gl~~a~~~lvg~~~Ga~~~~~ 306 (441)
T PRK10367 228 RGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTF-TAYALDGFAYAVEAHSGQAYGARDGSQ 306 (441)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHcCCCHHH
Confidence 3478999999999999999999999999999999999999999999999999 888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCc---hhHH
Q 013599 128 LGVYMQRSWIVLFICCVLLLP-LYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLK---TMVI 203 (439)
Q Consensus 128 ~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~---~~~~ 203 (439)
+++..+.+..+....+.+..+ .+.+.+++..+|.+|+|+.+.+..++++..+..+.........+.+++.+| ++.+
T Consensus 307 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~ 386 (441)
T PRK10367 307 LLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNS 386 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHH
Confidence 999999999999999987766 677889999999999999999999999988764433344445555555555 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHhh
Q 013599 204 AWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVAC 253 (439)
Q Consensus 204 ~~~~~~~~~~~i~~~~~li~~~~~gi~g~~~a~~~~~~~~~~~~~~~~~~ 253 (439)
+..+.+...+ ..+..+ ++|..|.|++..+++.+..++....+++
T Consensus 387 ~~~~~~~~~~----~~~~~~--~~g~~Gvw~a~~~~~~~~~i~~~~~~~~ 430 (441)
T PRK10367 387 MAVAAAGFAL----TLLTLP--WLGNHGLWLALTVFLALRGLSLAAIWRR 430 (441)
T ss_pred HHHHHHHHHH----HHHHHH--HcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988887432 111222 3599999999999999999888777664
No 24
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.77 E-value=8.4e-16 Score=150.19 Aligned_cols=204 Identities=15% Similarity=0.152 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccchhhH
Q 013599 49 IESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYML 128 (439)
Q Consensus 49 ~~~~~~l~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 128 (439)
+..|++++...|..++.....++..+|+.+.+++++..++++++++++.++....+..++++...|.+++...+||.++.
T Consensus 195 ~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~ 274 (451)
T PF03023_consen 195 PNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEF 274 (451)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 35889999999999999999999999999999999999999999999999867778889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcC----CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHH
Q 013599 129 GVYMQRSWIVLFICCVLLLP-LYVFASPVLKLLG----QPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVI 203 (439)
Q Consensus 129 ~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 203 (439)
++.+++.+...+.+.++..+ ++.+++|++..+. .+.+..+.....+++++++.++..+...+...+.+.+|+|.+
T Consensus 275 ~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~ 354 (451)
T PF03023_consen 275 RKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTP 354 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhH
Confidence 99999999999999999977 7889999998874 366778888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhc
Q 013599 204 AWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG 254 (439)
Q Consensus 204 ~~~~~~~~~~~i~~~~~li~~~~~gi~g~~~a~~~~~~~~~~~~~~~~~~~ 254 (439)
+..++++.++|++++.++...+ |..|.++++.++.++..++....++|+
T Consensus 355 ~~~~~~~~~lni~l~~~l~~~~--g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 355 VRISVISVVLNIILSILLVPFF--GVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888764 999999999999999999998888775
No 25
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.76 E-value=2.6e-16 Score=156.79 Aligned_cols=202 Identities=16% Similarity=0.133 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCh------H---HHhHH-HHHHHHHHHHHHHHHHHHHHhHHHH
Q 013599 47 FWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGH-LGD------L---ELAAI-SIANTVVVAFNFGLLLGMASALETL 115 (439)
Q Consensus 47 ~~~~~~~~l~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~------~---~~~~~-~~~~~~~~~~~~~~~~gl~~~~~~~ 115 (439)
.++..|++++++.|..++++...+...+|+.++++ +++ + .+|.+ +++.++..+ ...+..+++++..|.
T Consensus 220 ~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~-~~~~~~~l~~~~~p~ 298 (488)
T TIGR02900 220 GKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTF-PAVITSSLSTALVPD 298 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHh-HHHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999987 432 1 22333 345566666 567788999999999
Q ss_pred HHhhhcccchhhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 013599 116 CGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLP-LYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFL 194 (439)
Q Consensus 116 ~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l 194 (439)
++++++++|+++.++..++...+...++++..+ +..+.++++.++..++ ++.+++++.++..++..+.....+.+
T Consensus 299 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~l 374 (488)
T TIGR02900 299 ISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSIL 374 (488)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988776 6778888888876543 35678999999999999999999999
Q ss_pred HHcCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHhh
Q 013599 195 QSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVAC 253 (439)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~gi~g~~~a~~~~~~~~~~~~~~~~~~ 253 (439)
++.||+|..++.+++..++|++++++++...++|+.|+++++.+++++..++..+..+|
T Consensus 375 ~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 375 QGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998873234699999999999999999888887765
No 26
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.73 E-value=3.4e-18 Score=143.93 Aligned_cols=160 Identities=26% Similarity=0.398 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccchhhHHHHHHHHHHHH
Q 013599 60 PTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVL 139 (439)
Q Consensus 60 p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 139 (439)
|..+++++..+...+|+.+++++|++++++++++.++..+ ...+..|++++..+.+++++|++|++++++..+.++.+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~-~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSI-LFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH-Hhhhcccccccccceeecccccccccccccccccccccc
Confidence 8899999999999999999999999999999999999999 788999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHHHHHHHHHH-HHHHHH
Q 013599 140 FICCVLLLP-LYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASL-LVHLLV 217 (439)
Q Consensus 140 ~~~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~~ 217 (439)
+.+++++.+ ...+.+++..+++.+++..+.+..|+++..++.++..+.....+++++.||++..+..++++. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 999988877 588899999999999999999999999999999999999999999999999999999999998 999998
Q ss_pred HHH
Q 013599 218 TWL 220 (439)
Q Consensus 218 ~~~ 220 (439)
+|+
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 27
>PRK10459 colanic acid exporter; Provisional
Probab=99.73 E-value=2.7e-14 Score=142.36 Aligned_cols=200 Identities=15% Similarity=0.028 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccchh
Q 013599 48 WIESKKLWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYY 126 (439)
Q Consensus 48 ~~~~~~~l~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 126 (439)
++..|++++++.|...+++...+...+|+.++++ +|++++|.|+.+.++.+.....+...+++...|.+++. ++|++
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~ 280 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTE 280 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHH
Confidence 3567999999999999999999999999999999 69999999999999998744555566778888999886 67888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHHHH
Q 013599 127 MLGVYMQRSWIVLFICCVLLLP-LYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAW 205 (439)
Q Consensus 127 ~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 205 (439)
+.++.+.+.......++++..+ +...+++++..+.+++ ...+...++++++...+..+.......+++.||+|..+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 358 (492)
T PRK10459 281 KLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFK 358 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHH
Confidence 9999999999999988988877 6778888887776544 456788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHhh
Q 013599 206 VSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVAC 253 (439)
Q Consensus 206 ~~~~~~~~~i~~~~~li~~~~~gi~g~~~a~~~~~~~~~~~~~~~~~~ 253 (439)
.+++..+++++..+.+... +|+.|+++++.+++.+......++..|
T Consensus 359 ~~~~~~~~~i~~~~~~~~~--~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 359 WNVFKTFLFIPAIVIGGQL--AGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888888777666653 499999999999999988888877754
No 28
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.73 E-value=4.5e-14 Score=136.18 Aligned_cols=205 Identities=15% Similarity=0.151 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccchhhH
Q 013599 49 IESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYML 128 (439)
Q Consensus 49 ~~~~~~l~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 128 (439)
+..|++.+...|..+....+++...+|+.+.+.+.+...+.+.++.++.++..-.+..++++...|.+||...++|.++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 57899999999999999999999999999999999999999999999999967789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCC----CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHH
Q 013599 129 GVYMQRSWIVLFICCVLLLP-LYVFASPVLKLLGQ----PDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVI 203 (439)
Q Consensus 129 ~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 203 (439)
++..+.++...+++.+|..+ +..+++|+...+.. +++........+..+.++.++..+..++...+.+.+++|.|
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP 388 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence 99999999999999999987 78899999988732 45666777889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhcC
Q 013599 204 AWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGG 255 (439)
Q Consensus 204 ~~~~~~~~~~~i~~~~~li~~~~~gi~g~~~a~~~~~~~~~~~~~~~~~~~~ 255 (439)
+++.+++.++|+++++.+...+ |..|.++++.++.+++..+.++.++|+.
T Consensus 389 ~~i~ii~~~~n~~l~~~l~~~~--~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 389 MKIAIISLVVNILLNLLLIPPL--GHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999997777654 8888999999999999988888888763
No 29
>PRK15099 O-antigen translocase; Provisional
Probab=99.69 E-value=1.3e-14 Score=141.30 Aligned_cols=199 Identities=7% Similarity=-0.030 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccch
Q 013599 47 FWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKY 125 (439)
Q Consensus 47 ~~~~~~~~l~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 125 (439)
.++..|++++++.|..+++....+...+|+.++++ +|++++|.|+.+.++...+...+..+++++..|.++++ +|+
T Consensus 210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~ 286 (416)
T PRK15099 210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEK 286 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCh
Confidence 35578999999999999999999999999999985 89999999999999988535788999999999999995 567
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHHH
Q 013599 126 YMLGVYMQRSWIVLFICCVLLLP-LYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIA 204 (439)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 204 (439)
++.++..++.......++++..+ .++++++++.++..++ .+++.+++++.++...+...+......+.+.++++...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~ 364 (416)
T PRK15099 287 RDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYI 364 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999888888877766 5688999998887654 33467788999998888888887777777888998888
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHh
Q 013599 205 WVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVA 252 (439)
Q Consensus 205 ~~~~~~~~~~i~~~~~li~~~~~gi~g~~~a~~~~~~~~~~~~~~~~~ 252 (439)
...+...++++++++++++.+ |..|+++++.+++.+..++..+...
T Consensus 365 ~~~~~~~~l~i~l~~~li~~~--G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 365 LAEVSQFTLLTGFAHWLIPLH--GALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999999999864 9999999999999999887765554
No 30
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.64 E-value=1.7e-12 Score=117.39 Aligned_cols=247 Identities=14% Similarity=0.146 Sum_probs=175.9
Q ss_pred HHHHHHHHhhc-cChHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 013599 71 MFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPL 149 (439)
Q Consensus 71 ~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 149 (439)
.+++...+++| +|++++|.|+....+..+.......|+.+.... ..++|+++.++..+.......+.+++..++
T Consensus 3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PF13440_consen 3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL 77 (251)
T ss_pred HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888 799999999999999998455456777666544 223556666666666655544444333322
Q ss_pred HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013599 150 YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGL 229 (439)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~gi 229 (439)
.... ...+ .+++ ...++....+..+...+.....+.+++.+|.+..........+........+.. .+.+.
T Consensus 78 ~~~~---~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 148 (251)
T PF13440_consen 78 AILI---AYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLNL 148 (251)
T ss_pred HHHH---HHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhhH
Confidence 1111 1122 3332 223556667778888899999999999999999999999998877444444443 33478
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCChHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH
Q 013599 230 IGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAV 309 (439)
Q Consensus 230 ~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 309 (439)
.+..++..++.++..+......++ +.+.+. +.+..| .++.+.|..+...........+..+++.+-+ ..++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~-~~~~ 219 (251)
T PF13440_consen 149 WSILLAFIISALLALLISFYLLRR-KLRLSF------KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFLG-PEAV 219 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-ccCCCc------hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHH
Confidence 888888888888777666654332 211111 122234 7899999999999999999999999999333 4588
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q 013599 310 DALSICMSINGWEL-MIPLSFFAGTGVRVSNE 340 (439)
Q Consensus 310 a~~~~~~~i~~~~~-~~~~~i~~~~~p~i~~~ 340 (439)
|.|+++.++..... .+..++++...|.++++
T Consensus 220 g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 220 GIYSVAQRLASLPASLLSSAISSVFFPKLARM 251 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999888 99999999999999873
No 31
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.63 E-value=2e-13 Score=135.80 Aligned_cols=187 Identities=21% Similarity=0.243 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccch
Q 013599 47 FWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKY 125 (439)
Q Consensus 47 ~~~~~~~~l~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 125 (439)
.++..|++++.++|..++.....+...+|+.++++ +|++++|.|+.++++... ...+...++....|.+++...++|+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~-~~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSL-LLIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHH-HHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 46789999999999999999999999999999999 799999999988888888 7889999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHHH
Q 013599 126 YMLGVYMQRSWIVLFICCVLLLP-LYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIA 204 (439)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 204 (439)
++.++..++...+....+++..+ ...+.+|++..+.+++. ..+...++++++..++..+.......+++.||++..+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~--~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY--ASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 99999999999999999998877 67888899888766542 2267788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHH
Q 013599 205 WVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFS 239 (439)
Q Consensus 205 ~~~~~~~~~~i~~~~~li~~~~~gi~g~~~a~~~~ 239 (439)
..+.++.++|.++++++++.+ |+.|++.++ .+
T Consensus 365 ~~~~~~~i~~~~l~~~li~~~--g~~g~~~a~-~~ 396 (480)
T COG2244 365 LISLISALLNLILNLLLIPRF--GLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHhHHHHhh--hhhhHHHHH-HH
Confidence 999999999999999999864 889999888 44
No 32
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.48 E-value=6.3e-14 Score=117.85 Aligned_cols=135 Identities=20% Similarity=0.318 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 013599 280 ASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNGKGARFATIVSVVT 359 (439)
Q Consensus 280 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~i~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~ 359 (439)
|..+++..+.+.+.+++.+++++| +.++++++++.++.++...+..+++++..+.+++++|++|.+++++..+++..+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 788999999999999999999996 458889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 013599 360 SIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSDSC 416 (439)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 416 (439)
...++++.++++..+++++.++|++|+|+.+.+.+++++..+..++.++..+..+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 135 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGIL 135 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCC
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988
No 33
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.46 E-value=4.1e-12 Score=120.57 Aligned_cols=135 Identities=16% Similarity=0.164 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 013599 280 ASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNGKGARFATIVSVVT 359 (439)
Q Consensus 280 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~i~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~ 359 (439)
|.++.+....+...+++.++++++ +.++++++++.++..+...+..+++++..|.+++++|++|.|++++..+....+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 677888889999999999999988 457889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 013599 360 SIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSDSC 416 (439)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 416 (439)
...++++.+++++++++++.++++.|++..+++.+.++++.+..++.+++.+..+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l 135 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFL 135 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998788888999999999999999999999998888
No 34
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=99.10 E-value=6.6e-07 Score=79.62 Aligned_cols=311 Identities=14% Similarity=0.080 Sum_probs=188.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--h-HHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccchh
Q 013599 50 ESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLG--D-LELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYY 126 (439)
Q Consensus 50 ~~~~~l~~~~p~~~~~~~~~~~~~i~~~~i~~lg--~-~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 126 (439)
.++.+.++-.|+.++..+..+...+.+.-++|-. + +.++.|+++..+.-+ ...+...+-+.... +++++++
T Consensus 9 ~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf-~~sp~~~~~~igl~-----~V~s~rs 82 (345)
T PF07260_consen 9 SYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLF-FASPLSMFHHIGLV-----FVNSKRS 82 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHH-HhChhhhhHHHHHH-----Hhcchhh
Confidence 6889999999999999999999999999998732 2 348999999999888 55566665555333 4444433
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHH-HhhHHHH-HHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHH
Q 013599 127 MLGVYMQRSWIVLFICCVLLL-PLY-VFASPVL-KLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVI 203 (439)
Q Consensus 127 ~~~~~~~~~~~~~~~~~i~~~-~~~-~~~~~l~-~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 203 (439)
+. +........+.+...+.. +.+ .+...++ ..++.++++.+.+...+.++.+.-++.++....++++.-.+++...
T Consensus 83 rr-~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV 161 (345)
T PF07260_consen 83 RR-KAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIV 161 (345)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEe
Confidence 32 222222222222222222 222 2333333 5568899999999999999999999999999999998866777776
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCc-chHH---HHHHHHHHHHH-HHHHHHHhhc-CCCCccCCCChHhHhhHHHHHHH
Q 013599 204 AWVSLASLLVHLLVTWLFVYKMQLGL-IGTA---ITLSFSWWVLI-FGMFGYVACG-GCPRTWTGFSMEAFSDLWEFVKL 277 (439)
Q Consensus 204 ~~~~~~~~~~~i~~~~~li~~~~~gi-~g~~---~a~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~ 277 (439)
...++...+..+++...++.. +... ..+. .+...+..+.+ ++.+.+++.- ...........++...+++++++
T Consensus 162 ~~aSI~~v~~qvV~v~~ll~~-~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F 240 (345)
T PF07260_consen 162 GSASIADVIAQVVLVAILLSM-HLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKF 240 (345)
T ss_pred ehHHHHHHHHHHHHHHHHHcc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHH
Confidence 666666555555544444421 1111 1111 22222222211 1112222111 22222222223333567899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-CCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHH---
Q 013599 278 SVASGVMLCLENWYYRVLILMTGN-LQNA---KIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNGKGAR--- 350 (439)
Q Consensus 278 ~~p~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~va~~~~~~~i~~~~~~~~~~i~~~~~p~i~~~~g~~~~~~~~--- 350 (439)
.+|.+.....+.+.--+.+.+++| +++. ..+|+...+.+...-+.+-...-+ .+..|..-++ ++.++.+
T Consensus 241 ~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~y~w~~~~-r~~~paf~~~---~~~~~~~~~~ 316 (345)
T PF07260_consen 241 WWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMPYGWLTEL-RAVYPAFDKN---NPQNKLRNCG 316 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCcchhHHhH-HhhCchhhcc---Cccccccccc
Confidence 999999999999999999999999 4443 245666555555544444333222 1233333222 2233332
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHH
Q 013599 351 -----FATIVSVVTSIAIGVFFFILIL 372 (439)
Q Consensus 351 -----~~~~~~~~~~~~~~~~~~~~~~ 372 (439)
..+++....++.+++.+++.++
T Consensus 317 ~~v~~~~~~kf~~~c~~~sl~~~f~~f 343 (345)
T PF07260_consen 317 NPVTQSHISKFVVLCLLLSLALCFVMF 343 (345)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3777888888888888887765
No 35
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.00 E-value=7.2e-07 Score=88.40 Aligned_cols=360 Identities=8% Similarity=-0.039 Sum_probs=209.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHhHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHhhhcccchhhHHHHHH
Q 013599 56 HIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVV-AFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQ 133 (439)
Q Consensus 56 ~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~-~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~ 133 (439)
+-+.-.++.+++..+.+++-+.++-| ++++.+|..++=.-+.. ...+.--.++-.+.+..-.+...++|.++..+..+
T Consensus 5 ~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~w 84 (549)
T PF04506_consen 5 KGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLLW 84 (549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhccc
Confidence 34455667778888888777777777 89999988754444333 22455667787776654333322223334333333
Q ss_pred HHHHHHHHHHHHHHHHHH--hh--HH--HHHHcCC-CHH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHH
Q 013599 134 RSWIVLFICCVLLLPLYV--FA--SP--VLKLLGQ-PDD---VAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVI 203 (439)
Q Consensus 134 ~~~~~~~~~~i~~~~~~~--~~--~~--l~~~~~~-~~~---~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 203 (439)
.......++++++..+.+ .. .. ...+... .++ ..+.....+.+...+...-.+...+....|..-+.+.-
T Consensus 85 ls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~R 164 (549)
T PF04506_consen 85 LSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKLR 164 (549)
T ss_pred ccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhee
Confidence 333333333332211111 11 00 1111111 111 12233334455555555555555554455555444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc---C--CCc-----c-hHHHHHHHHHHHHHHHHHHHHhhc--CC----CCccCCCCh-
Q 013599 204 AWVSLASLLVHLLVTWLFVYKM---Q--LGL-----I-GTAITLSFSWWVLIFGMFGYVACG--GC----PRTWTGFSM- 265 (439)
Q Consensus 204 ~~~~~~~~~~~i~~~~~li~~~---~--~gi-----~-g~~~a~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~- 265 (439)
......+...+.+.++.++... + ++. . -+.++...+++...+......... .. +....+...
T Consensus 165 v~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~~ 244 (549)
T PF04506_consen 165 VKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISSG 244 (549)
T ss_pred eEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhcccccccc
Confidence 4444444444444444333321 1 111 1 123444555554443322211111 11 111111111
Q ss_pred --HhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q 013599 266 --EAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGN--LQNAKIAVDALSICMSINGWEL-MIPLSFFAGTGVRVSNE 340 (439)
Q Consensus 266 --~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~va~~~~~~~i~~~~~-~~~~~i~~~~~p~i~~~ 340 (439)
+....-+++++....+..++....+..+.+..++.. +.+ ..+-|.|.+++++.++.. ++...+..+.....++.
T Consensus 245 ~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~ 323 (549)
T PF04506_consen 245 NPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKL 323 (549)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 011123688999999999999999999999988888 665 346789999999999887 77788999888888888
Q ss_pred hcCCCh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 013599 341 LGAGNG---------KGARFATIVSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPV 411 (439)
Q Consensus 341 ~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 411 (439)
..+++. +++.+.....++....+++.+........+.+.+++.+++=....+..++++++++.++.+++.+
T Consensus 324 l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi 403 (549)
T PF04506_consen 324 LSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGI 403 (549)
T ss_pred hcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccH
Confidence 765432 45677778888888888888888888888888888755432233468899999999999999999
Q ss_pred hhhHH
Q 013599 412 LSDSC 416 (439)
Q Consensus 412 ~~~~l 416 (439)
+..+.
T Consensus 404 ~EaF~ 408 (549)
T PF04506_consen 404 TEAFV 408 (549)
T ss_pred HHHHH
Confidence 99988
No 36
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=98.98 E-value=2.1e-09 Score=104.67 Aligned_cols=204 Identities=16% Similarity=0.100 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--hHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccch
Q 013599 48 WIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLG--DLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKY 125 (439)
Q Consensus 48 ~~~~~~~l~~~~p~~~~~~~~~~~~~i~~~~i~~lg--~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 125 (439)
.+.++.+++.+.|..+...+..-...+.....|.++ ..+++..++...+... .+.+..|++.+....+++.+|++++
T Consensus 243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~-~~~~~~~~~~a~strv~neLGag~p 321 (473)
T KOG1347|consen 243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGW-HLMIPGAFSAAVSTRVSNELGAGKP 321 (473)
T ss_pred hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHH-HHHHhhhhhhhHHHHHHHHHcCCCh
Confidence 778999999999999999999999999999999986 4688899998888888 7778889999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHHH
Q 013599 126 YMLGVYMQRSWIVLFICCVLLLP-LYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIA 204 (439)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 204 (439)
++++.........+..+++.... ++...+.+...|+.++++.+...+..++++.+.+....+.+..+..++.|+.+...
T Consensus 322 ~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga 401 (473)
T KOG1347|consen 322 KRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGA 401 (473)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceE
Confidence 99999999999989888877765 77788888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHh
Q 013599 205 WVSLAS-LLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVA 252 (439)
Q Consensus 205 ~~~~~~-~~~~i~~~~~li~~~~~gi~g~~~a~~~~~~~~~~~~~~~~~ 252 (439)
+.++.. .++.+++...+-+..++|..|.+.+...+..+..........
T Consensus 402 ~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~ 450 (473)
T KOG1347|consen 402 VINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTA 450 (473)
T ss_pred EEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHhee
Confidence 999887 566677776666667889999999999996666666655544
No 37
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.71 E-value=8e-05 Score=69.66 Aligned_cols=359 Identities=11% Similarity=0.001 Sum_probs=203.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHhHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHhhhcccchhhH
Q 013599 51 SKKLWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVA-FNFGLLLGMASALETLCGQAFGGKKYYML 128 (439)
Q Consensus 51 ~~~~l~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~-~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 128 (439)
..+..+-+...+..+++..+.+++-+.++-| ++++.+|..++-..+..- +.+..-.++..+..+.-++. +++..+.
T Consensus 7 L~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A~l~~gs~~--~d~~te~ 84 (530)
T KOG2864|consen 7 LESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLAELRIGSEP--ADTWTEF 84 (530)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHHhccCCCCC--CccHHHH
Confidence 3344455555555666666666655555555 899999988765555442 23334455555543332221 2334455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHHHHHH
Q 013599 129 GVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDD-VAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVS 207 (439)
Q Consensus 129 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 207 (439)
.+..+.+.-+..+.++.+.-+++.. .. ..|+. ..+....-+.+...++..-.+...+.-..|..-+.+.-.+..
T Consensus 85 ~n~~wlS~~L~~~i~~~~i~~wl~~---~~--s~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~e 159 (530)
T KOG2864|consen 85 INLLWLSVPLQTAINVACIYFWLGF---LS--SSDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIAE 159 (530)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHH---hh--ccchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh
Confidence 5555555555555554443222111 11 01111 122223334455555555556666666777777777777888
Q ss_pred HHHHHHHHHHHHHHHh-hc-CCCcchHHHHHHHHHHHHHHHHHH-HHhhcC-CCCc-----cCC----C-Ch-HhHhhHH
Q 013599 208 LASLLVHLLVTWLFVY-KM-QLGLIGTAITLSFSWWVLIFGMFG-YVACGG-CPRT-----WTG----F-SM-EAFSDLW 272 (439)
Q Consensus 208 ~~~~~~~i~~~~~li~-~~-~~gi~g~~~a~~~~~~~~~~~~~~-~~~~~~-~~~~-----~~~----~-~~-~~~~~~~ 272 (439)
.++.++..+..+.... .. .+++...++|.........+..++ |++.++ .+.. ..+ . .. .....-+
T Consensus 160 ~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ffd~ 239 (530)
T KOG2864|consen 160 GLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIFFDN 239 (530)
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCccccccH
Confidence 8887777554444443 22 235555555555444333332222 222112 0000 000 0 00 0001123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChhHHH
Q 013599 273 EFVKLSVASGVMLCLENWYYRVLILMTGNLQN-AKIAVDALSICMSINGWEL-MIPLSFFAGTGVRVSNELGAGNGKGAR 350 (439)
Q Consensus 273 ~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~va~~~~~~~i~~~~~-~~~~~i~~~~~p~i~~~~g~~~~~~~~ 350 (439)
+..+.-....-+.....+...-+..++..... .-.+-|.|.+++++.++.. ++...+........++....++.|+.|
T Consensus 240 d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k 319 (530)
T KOG2864|consen 240 DLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENVK 319 (530)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhHH
Confidence 55666666666666666666666555553221 0113458999999988877 777888888888888887766666555
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 013599 351 F---ATIVSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSDSC 416 (439)
Q Consensus 351 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 416 (439)
+ +....++....+++.+...-...++.+..++++++=.-..+...+++++.+.++.+++.+..+++
T Consensus 320 ~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~ 388 (530)
T KOG2864|consen 320 KAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFA 388 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHH
Confidence 4 45566677777777777777777888888886543223335688999999999999999999988
No 38
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.52 E-value=1.6e-05 Score=65.24 Aligned_cols=79 Identities=22% Similarity=0.249 Sum_probs=73.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHhh
Q 013599 174 SLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVAC 253 (439)
Q Consensus 174 l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~gi~g~~~a~~~~~~~~~~~~~~~~~~ 253 (439)
+++++++.++..+....++.+++.||+|..++.+.++.++|+++++++++. +|..|+++++.+++.+...+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999999999999999999999999999999999875 499999999999999999988888876
Q ss_pred c
Q 013599 254 G 254 (439)
Q Consensus 254 ~ 254 (439)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 4
No 39
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.52 E-value=2.5e-05 Score=77.67 Aligned_cols=203 Identities=8% Similarity=0.011 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--c-ChHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccch--
Q 013599 51 SKKLWHIVGPTIFSRMASYSMFVITQAFAGH--L-GDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKY-- 125 (439)
Q Consensus 51 ~~~~l~~~~p~~~~~~~~~~~~~i~~~~i~~--l-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~-- 125 (439)
-+++++.......+.+.-.+.+--|++++.. + +.++-|.|++++++-++..=.+...+.-+.-...++...+++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 4678888889999999999999999999998 5 7889999999999999866677778888888888887765432
Q ss_pred -------hhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHc
Q 013599 126 -------YMLGVYMQRSWIVLFICCVLLLP-LYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQ 197 (439)
Q Consensus 126 -------~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~ 197 (439)
+++.+.+...+.+...++++... +...++.++.+++++.=..+.+...++.++..+|+.+++.+..++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 34566667777777777755544 6677777777775543333345678999999999999999999999988
Q ss_pred CchhHHHHHH---HHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhc
Q 013599 198 LKTMVIAWVS---LASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG 254 (439)
Q Consensus 198 ~~~~~~~~~~---~~~~~~~i~~~~~li~~~~~gi~g~~~a~~~~~~~~~~~~~~~~~~~ 254 (439)
...+.....+ .+..++.+..+++++.+ ++|..|..+|.++...+..+....+.++.
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665554444 44456667778888876 67999999999999999988888887764
No 40
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.00 E-value=0.0023 Score=60.20 Aligned_cols=200 Identities=10% Similarity=0.062 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cChHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccchhhH
Q 013599 52 KKLWHIVGPTIFSRMASYSMFVITQAFAGH---LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYML 128 (439)
Q Consensus 52 ~~~l~~~~p~~~~~~~~~~~~~i~~~~i~~---lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 128 (439)
++..+.......+.++-.+.+--|.+++.. ++-.+-|.|.+.+++-++..=.+...+.-..-.+.+|...++++|+.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 455666666777888888888889998884 35567788888888888756667777777777777877776666555
Q ss_pred HHH---HHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHHH
Q 013599 129 GVY---MQRSWIVLFICCVLLLP-LYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIA 204 (439)
Q Consensus 129 ~~~---~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 204 (439)
++. +...+.+...+++.... +...+++.+.+++++.-....+...+++.+..+++.+++.+..+++.+....+..-
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~ 398 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID 398 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence 554 44455555555543333 55667777777766543333455789999999999999999999999887655443
Q ss_pred ---HHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHhh
Q 013599 205 ---WVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVAC 253 (439)
Q Consensus 205 ---~~~~~~~~~~i~~~~~li~~~~~gi~g~~~a~~~~~~~~~~~~~~~~~~ 253 (439)
....+..++..+.+++++.++ |..|..+|.++...+..+....+.++
T Consensus 399 ~~n~~mlafSviflilsylL~~~~--~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 399 KHNKFMLAFSVIFLILSYLLIRWF--GLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred hcccchhHHHHHHHHHHHHHHHHh--chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455677788899999876 77999998888877777666656554
No 41
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.46 E-value=0.00089 Score=60.92 Aligned_cols=71 Identities=20% Similarity=0.119 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 013599 48 WIESKKLWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQA 119 (439)
Q Consensus 48 ~~~~~~~l~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~ 119 (439)
++..|++++.+.|..++.+...+....|+.++++ .|++++|.|+.+.++... ...+...+.+...|.+++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~-~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 201 KKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASA-ISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 6689999999999999999999999999999999 699999999999999999 7778899999999999885
No 42
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.11 E-value=0.071 Score=48.31 Aligned_cols=143 Identities=10% Similarity=0.108 Sum_probs=101.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 013599 268 FSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNL-QNAKIAVDALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNG 346 (439)
Q Consensus 268 ~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~va~~~~~~~i~~~~~~~~~~i~~~~~p~i~~~~g~~~~ 346 (439)
..+.+++.++-+|++++.....+.-++.|.-+++- -+....+|+|+++..+.-++.-+...+-+.-...+. ++.
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~-----s~r 81 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVN-----SKR 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhc-----chh
Confidence 35677999999999999999999999988888764 333345899999999999999888888766555543 322
Q ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHH-HhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 013599 347 KGARFATIVSVVTSIAIGVF-FFILILIFHNE-LALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSDSC 416 (439)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 416 (439)
+ -++........+.+.... ..+..-.+... +-+++.-|+++.+.+...+.++....+++++....+|++
T Consensus 82 s-rr~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGIL 152 (345)
T PF07260_consen 82 S-RRKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGIL 152 (345)
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 2 222222222222222211 22222223333 334567789999999999999999999999999999999
No 43
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=96.59 E-value=0.015 Score=52.18 Aligned_cols=66 Identities=18% Similarity=0.140 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 013599 53 KLWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQ 118 (439)
Q Consensus 53 ~~l~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~ 118 (439)
+.++.+.|..++.+.......+|.++++. +|++++|.|+.+.++.......+..++++...|.++|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 47999999999999999999999999999 8999999999999999973337999999999998886
No 44
>COG4267 Predicted membrane protein [Function unknown]
Probab=95.44 E-value=2.3 Score=39.77 Aligned_cols=264 Identities=12% Similarity=0.091 Sum_probs=145.6
Q ss_pred HHHHHHHHHHhHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 013599 101 NFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPV 180 (439)
Q Consensus 101 ~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~ 180 (439)
...+..|+....++++|...=+||.+++...+--...+....+..... ++-...++.. ..|=...+..
T Consensus 73 S~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~-------~vf~~~~~~s-----i~yk~l~~~~ 140 (467)
T COG4267 73 SQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGL-------IVFFVNNQYS-----IVYKILACAL 140 (467)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH-------HhhhhcCchh-----HHHHHHHHHH
Confidence 555777788888888888877777777665554333333332222221 1111111111 1121233334
Q ss_pred HHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhc-CCCCc
Q 013599 181 HFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG-GCPRT 259 (439)
Q Consensus 181 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~gi~g~~~a~~~~~~~~~~~~~~~~~~~-~~~~~ 259 (439)
....+.......++.+.+|.+.....-.++.++.+.+..++-. .++.|..++..++..+.......+..|. +-+++
T Consensus 141 FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~~ 217 (467)
T COG4267 141 FVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRYFKSSRR 217 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccc
Confidence 4555666777888999999999999988888888777666554 3899999999999888887777777665 22111
Q ss_pred cCCCChHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH------HHHHHHHHHHHHHHHHHH-----H
Q 013599 260 WTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAV------DALSICMSINGWELMIPL-----S 328 (439)
Q Consensus 260 ~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v------a~~~~~~~i~~~~~~~~~-----~ 328 (439)
..+... + ..+-=....+-.........+++.+.=.-++++.-. -.|-+..-...+...+.. .
T Consensus 218 -i~FdFL--~----~~~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i~ 290 (467)
T COG4267 218 -IGFDFL--L----YRRKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLIS 290 (467)
T ss_pred -cceehh--h----hhhcchHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeeee
Confidence 111111 0 011111122333344555555554432222111110 113333333333333333 3
Q ss_pred HHHHHHHHHHHhhc----C-------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCcH
Q 013599 329 FFAGTGVRVSNELG----A-------GNGKGARFATIVSVVTSIAIGVFFFILILIFHNELALIFSSSE 386 (439)
Q Consensus 329 i~~~~~p~i~~~~g----~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 386 (439)
+.+..++.--+.+. . ++.++.....+....-.+-+-...++.++++++.+..+|.-++
T Consensus 291 lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~ 359 (467)
T COG4267 291 LETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSE 359 (467)
T ss_pred eeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH
Confidence 45555555433332 1 2233344445555555666777888999999999999887554
No 45
>COG4267 Predicted membrane protein [Function unknown]
Probab=70.27 E-value=1e+02 Score=29.37 Aligned_cols=117 Identities=9% Similarity=0.065 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHHH
Q 013599 126 YMLGVYMQRSWIVLFICCVLLLP-LYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIA 204 (439)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 204 (439)
++.....++.+.-..-+-....+ +..+++.+..+++.++-. .+.+++-.++..++......-...-=.++-+..+
T Consensus 320 ~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~~----l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l 395 (467)
T COG4267 320 KKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEYY----LDLFYVDVLGVSCQIVFMSLLNIFLYFDYRRIAL 395 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 33444444444434434434444 678888899988766533 3344454444444433333333344456667777
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHH
Q 013599 205 WVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFG 249 (439)
Q Consensus 205 ~~~~~~~~~~i~~~~~li~~~~~gi~g~~~a~~~~~~~~~~~~~~ 249 (439)
..+..-.+.|.++++++.. .+.+..|+.. .++.++...+...
T Consensus 396 ~~t~~fli~N~ilT~i~l~-lgp~~~g~gf--f~a~fl~vlv~~~ 437 (467)
T COG4267 396 ELTALFLISNGILTFIFLE-LGPGYYGVGF--FLASFLYVLVAFK 437 (467)
T ss_pred hhhhHHHHHhHHHHHHHHH-hCccceehHH--HHHHHHHHHHHHh
Confidence 7777778889999888776 3556665443 3343444333333
No 46
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=67.11 E-value=35 Score=24.49 Aligned_cols=38 Identities=24% Similarity=0.142 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHH
Q 013599 329 FFAGTGVRVSNELGAGNGKGARFATIVSVVTSIAIGVF 366 (439)
Q Consensus 329 i~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 366 (439)
++-.....+.+.+.+||++++++..++..+++.+-...
T Consensus 36 ~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 36 VAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 33444556778888999999999999998887554444
No 47
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=45.68 E-value=3.2e+02 Score=27.36 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=22.6
Q ss_pred HcCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchH
Q 013599 196 SQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGT 232 (439)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~gi~g~ 232 (439)
-.-|+...........+.|.+....+.+.. ...|.
T Consensus 399 ~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~--~~~g~ 433 (485)
T KOG0569|consen 399 QSARSAAQSVATAVNWLSNFIVGFAFPPLQ--NVIGP 433 (485)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcc
Confidence 334666667777777888887777766643 44444
No 48
>PF03609 EII-Sor: PTS system sorbose-specific iic component; InterPro: IPR004700 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=38.62 E-value=2.8e+02 Score=24.61 Aligned_cols=65 Identities=11% Similarity=-0.035 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHhhhc
Q 013599 318 INGWELMIPLSFFAGTGVRVSNELGAGNGKGARFATIVSVVTSIAIGVFF-FILILIFHNELALIF 382 (439)
Q Consensus 318 i~~~~~~~~~~i~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~f 382 (439)
+.+....+...+++....+.-+...++|.+++++................ .++...+..+..+-+
T Consensus 105 lg~~l~~~~~~~n~~~~~~adk~ae~gn~~~i~~~~~~~~~~~~~~~~v~~~fl~~~~G~~~v~~~ 170 (238)
T PF03609_consen 105 LGQQLDNLLRTINSFFVHRADKAAEEGNYKKINRIHWIGPILFFLIYFVPPVFLAVYFGSDAVQAL 170 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 34455566667777888887788888999998888777765555555555 555555555555544
No 49
>PRK03612 spermidine synthase; Provisional
Probab=35.28 E-value=4.9e+02 Score=26.33 Aligned_cols=28 Identities=14% Similarity=0.139 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-cChHHH
Q 013599 60 PTIFSRMASYSMFVITQAFAGH-LGDLEL 87 (439)
Q Consensus 60 p~~~~~~~~~~~~~i~~~~i~~-lg~~~~ 87 (439)
-.+++.+...++..+-.-+++. +|...+
T Consensus 22 ~~f~sg~~~L~yEv~~~r~l~~~~G~s~~ 50 (521)
T PRK03612 22 AVFVCAACGLVYELLLGTLASYLLGDSVT 50 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchHH
Confidence 3446667777777776666766 565443
No 50
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=29.65 E-value=5.4e+02 Score=25.10 Aligned_cols=31 Identities=13% Similarity=-0.193 Sum_probs=20.4
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013599 341 LGAGNGKGARFATIVSVVTSIAIGVFFFILI 371 (439)
Q Consensus 341 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (439)
+++-+.++..+..+++.+....+...++...
T Consensus 256 ~~~~~~~~l~~~l~~~~~~~~~i~~iia~a~ 286 (416)
T PF06808_consen 256 YRRLSWKDLWRALVETARTTGMILFIIAAAG 286 (416)
T ss_pred hcccChhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777766665554443
No 51
>PF10997 DUF2837: Protein of unknown function (DUF2837); InterPro: IPR021260 This bacterial family of proteins has no known function.
Probab=29.29 E-value=3.3e+02 Score=24.43 Aligned_cols=73 Identities=8% Similarity=0.039 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcC
Q 013599 311 ALSICMSINGWELMIPLSFFAGTGVRVSNELGAGNGKGARFATIVSVVTSIAIGVFFFILILIFHNELALIFS 383 (439)
Q Consensus 311 ~~~~~~~i~~~~~~~~~~i~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~ 383 (439)
-...+.++.++...++..-+..-.|.++....+...++.......-+++....+....++..++-+.+.++|.
T Consensus 24 kiA~a~SLfni~~LvSRtan~~QaPllg~lvd~~~~~~~~~~l~~~~r~vi~~at~gtl~g~lL~Ptfv~lF~ 96 (254)
T PF10997_consen 24 KIATAFSLFNIIVLVSRTANMFQAPLLGSLVDTAISQGQLSDLLNQFRLVILAATVGTLLGILLIPTFVRLFS 96 (254)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777888888888888889998887654442223334444455555555556666666677777663
No 52
>PRK10739 putative antibiotic transporter; Provisional
Probab=28.89 E-value=3.8e+02 Score=23.05 Aligned_cols=66 Identities=11% Similarity=0.188 Sum_probs=41.0
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCcHHHHHHHHHHH-HHHHHHHH
Q 013599 335 VRVSNELGAGNGKGARFATIVSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMS-ILLAFTIL 404 (439)
Q Consensus 335 p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l-~~~~~~~~ 404 (439)
|..-..-.+.+.++-|+..++.....+ .+.+++.++.+.+.++|.=+-+..+.+..++ -..++-..
T Consensus 22 piflslt~~~~~~~r~~ia~~a~~~a~----~ill~f~~~G~~iL~~fGIsl~afrIAGGilL~~ial~ml 88 (197)
T PRK10739 22 PIFMSVLKHLEPKRRRAIMIRELLIAL----LVMLVFLFAGEKILAFLNLRTETVSISGGIILFLIAIKMI 88 (197)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 555555555667777777776665554 4445778888999999976555555555544 33344443
No 53
>PF02592 DUF165: Uncharacterized ACR, YhhQ family COG1738; InterPro: IPR003744 This is a family of uncharacterised proteins. Conserved regions of hydrophobicity suggest that all members of the family may be integral membrane proteins.
Probab=28.05 E-value=3.2e+02 Score=21.98 Aligned_cols=100 Identities=11% Similarity=0.153 Sum_probs=46.7
Q ss_pred HHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 013599 112 LETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQ 191 (439)
Q Consensus 112 ~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~ 191 (439)
..-.+++.+|+ +++++....++...++..+...+...+.++- .. +++....-....++...+.....+++..+
T Consensus 13 ~~Dii~E~yG~---~~a~~~i~~g~~~~~~~~~~~~~~~~lp~~~-~~---~~~~~~vf~~~~ri~~aS~~a~lisq~~d 85 (145)
T PF02592_consen 13 ITDIISEVYGK---KAARKAIWIGFLANLLFSLLIWIVILLPPAP-FW---QEAFESVFGPTPRIALASLIAFLISQLLD 85 (145)
T ss_pred HHHHHHHHhCH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh-hh---HHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34567787775 5566666666666555544433322221111 11 22222223344556666666555555555
Q ss_pred HHHHHcCch----hHHHHHHHHHHHHHHHHH
Q 013599 192 RFLQSQLKT----MVIAWVSLASLLVHLLVT 218 (439)
Q Consensus 192 ~~l~~~~~~----~~~~~~~~~~~~~~i~~~ 218 (439)
......=|. |..-..+..++.+.-.++
T Consensus 86 ~~if~~lk~~~~~r~lw~R~~~St~isq~iD 116 (145)
T PF02592_consen 86 VYIFSKLKRKTKGRSLWLRNNGSTAISQLID 116 (145)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence 544332222 234444444444444433
No 54
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=24.75 E-value=6.3e+02 Score=24.28 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=27.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHH
Q 013599 124 KYYMLGVYMQRSWIVLFICCVLLLP-LYVFASPVLK 158 (439)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~ 158 (439)
++++.+++++.+...+.....+... +....-|+..
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999998866644 6667777775
No 55
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=24.65 E-value=4.5e+02 Score=22.60 Aligned_cols=65 Identities=9% Similarity=0.160 Sum_probs=40.8
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHH-HHHH
Q 013599 335 VRVSNELGAGNGKGARFATIVSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILL-AFTI 403 (439)
Q Consensus 335 p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~-~~~~ 403 (439)
|.....-++.+.++-|+..++....++ ...+.+.++++.+.++|.=+-+..+.+..++... ++-.
T Consensus 25 pvfl~lt~~~~~~~r~~ia~~~~l~a~----~ill~f~~~G~~iL~~fgIsl~afrIaGGiiL~~ia~~m 90 (201)
T TIGR00427 25 PIFISLTEYYTAAERNKIAKKANISSF----IILLIFLVFGDTILKLFGISIDAFRIAGGILLFTIAMDM 90 (201)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 555555555667777777776655444 4445777888899999976555566555554433 4443
No 56
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=23.86 E-value=6.8e+02 Score=24.34 Aligned_cols=50 Identities=10% Similarity=-0.008 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhc--c-ChHHHhHHHHHHH
Q 013599 46 RFWIESKKLWHIVGPTIFSRMASYSMFV--ITQAFAGH--L-GDLELAAISIANT 95 (439)
Q Consensus 46 ~~~~~~~~~l~~~~p~~~~~~~~~~~~~--i~~~~i~~--l-g~~~~~~~~~~~~ 95 (439)
+..+..|.++++.+|+.+..+.+.+.+. .++..--. . -.+.+..|+..++
T Consensus 237 ~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y~~~YQ 291 (402)
T PF02487_consen 237 EKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWYQLLYQ 291 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHHHHHHH
Confidence 3455778888899999999998887633 33332211 1 1345556655544
No 57
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=21.82 E-value=5.9e+02 Score=22.91 Aligned_cols=77 Identities=12% Similarity=-0.062 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHH
Q 013599 320 GWELMIPLSFFAGTGVRVSNELGAGNGKGARFATIVSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSIL 398 (439)
Q Consensus 320 ~~~~~~~~~i~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~ 398 (439)
.+.-.+...+.-+.....-+--..+..+..|+..-.+..++....+.=++.-+.+++ ..++.++.+....+....+.
T Consensus 85 ~ilrfflL~lEvSvvvFgL~fghlds~~Si~r~l~iT~~is~~~s~~Q~ilef~~~d--~~l~~~~~~~~~hgg~~fW~ 161 (261)
T PF10160_consen 85 NILRFFLLSLEVSVVVFGLQFGHLDSRSSIKRTLLITGLISLADSLTQAILEFGFGD--VPLFIENFDLFGHGGWGFWF 161 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHheeecCc--ccccCCCCCcCCcCCeehHH
Confidence 333344444444444433221112344555555555555555555555666666665 45566555555554444433
No 58
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=20.67 E-value=5.2e+02 Score=21.77 Aligned_cols=27 Identities=15% Similarity=0.141 Sum_probs=18.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhc
Q 013599 228 GLIGTAITLSFSWWVLIFGMFGYVACG 254 (439)
Q Consensus 228 gi~g~~~a~~~~~~~~~~~~~~~~~~~ 254 (439)
+..|...++.+++++..++...|..+-
T Consensus 135 ~~s~s~~~~ti~yIiL~iLf~~Ya~nl 161 (189)
T PF05313_consen 135 SVSGSSGAYTISYIILAILFCIYAFNL 161 (189)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHheeec
Confidence 444666677888888777776666543
No 59
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=20.16 E-value=6.6e+02 Score=22.79 Aligned_cols=34 Identities=3% Similarity=-0.140 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 013599 322 ELMIPLSFFAGTGVRVSNELGAGNGKGARFATIV 355 (439)
Q Consensus 322 ~~~~~~~i~~~~~p~i~~~~g~~~~~~~~~~~~~ 355 (439)
...+...+++.+..+.=+...++|.+++++....
T Consensus 109 l~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~~~ 142 (265)
T TIGR00822 109 LTIFVRTITVLFQHAADKAAKEANTAAISRLHVT 142 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHHH
Confidence 3445556666666777677777888887655443
Done!