Query 013599
Match_columns 439
No_of_seqs 224 out of 2020
Neff 10.2
Searched_HMMs 13730
Date Mon Mar 25 13:36:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013599.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013599hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pv7a_ f.38.1.2 (A:) Lactose 26.8 1.5E+02 0.011 23.9 18.4 23 228-250 377-399 (417)
2 d1nkzb_ f.3.1.1 (B:) Light-har 15.2 87 0.0064 16.6 3.8 33 345-377 7-39 (41)
3 d1m56d_ f.23.8.1 (D:) Bacteria 10.8 1.3E+02 0.0095 16.1 4.4 34 339-372 2-35 (42)
4 d1ijdb_ f.3.1.1 (B:) Light-har 7.3 1.8E+02 0.013 15.2 3.7 30 345-374 8-37 (40)
5 d1lghb_ f.3.1.1 (B:) Light-har 6.6 1.3E+02 0.0095 16.3 1.8 31 345-375 10-40 (43)
6 d1pw4a_ f.38.1.1 (A:) Glycerol 4.2 8.1E+02 0.059 19.3 31.5 17 329-345 300-316 (447)
7 d1i8ya_ g.3.16.1 (A:) N-termin 3.8 85 0.0062 14.7 -0.2 6 433-438 18-23 (28)
8 d1qled_ f.23.8.1 (D:) Bacteria 3.8 3.5E+02 0.026 14.4 4.7 31 341-371 5-35 (43)
9 d2yvxa3 f.57.1.1 (A:276-448) M 3.6 7.1E+02 0.052 17.7 7.0 33 341-373 69-101 (173)
10 d2r6gg1 f.58.1.1 (G:7-296) Mal 3.6 8.3E+02 0.06 18.5 9.3 49 337-385 185-233 (290)
No 1
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=26.84 E-value=1.5e+02 Score=23.88 Aligned_cols=23 Identities=13% Similarity=0.043 Sum_probs=8.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHH
Q 013599 228 GLIGTAITLSFSWWVLIFGMFGY 250 (439)
Q Consensus 228 gi~g~~~a~~~~~~~~~~~~~~~ 250 (439)
|.....+...+..++..++..+.
T Consensus 377 g~~~~~~~~~~~~~~~~~~~~~~ 399 (417)
T d1pv7a_ 377 GFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHh
Confidence 54444433333333333333333
No 2
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=15.23 E-value=87 Score=16.58 Aligned_cols=33 Identities=6% Similarity=-0.050 Sum_probs=25.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 013599 345 NGKGARFATIVSVVTSIAIGVFFFILILIFHNE 377 (439)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (439)
+.|+..|....+.+....++++.=++.+...++
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPW 39 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPW 39 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCcc
Confidence 457888899999999888888877766665554
No 3
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=10.81 E-value=1.3e+02 Score=16.13 Aligned_cols=34 Identities=9% Similarity=-0.085 Sum_probs=20.2
Q ss_pred HhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013599 339 NELGAGNGKGARFATIVSVVTSIAIGVFFFILIL 372 (439)
Q Consensus 339 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (439)
+..|+-|.+.-+|.+.-.+++..-.++.+..++.
T Consensus 2 HkHG~MDi~vQEKTF~gFik~~t~~~i~~i~~li 35 (42)
T d1m56d_ 2 HVAGSMDITQQEKTFAGFVRMVTWAAVVIVAALI 35 (42)
T ss_dssp CCTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777776666665555444444433
No 4
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=7.25 E-value=1.8e+02 Score=15.18 Aligned_cols=30 Identities=10% Similarity=0.083 Sum_probs=22.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013599 345 NGKGARFATIVSVVTSIAIGVFFFILILIF 374 (439)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (439)
+.|+..|....+.++...++++.=++.+..
T Consensus 8 eaEElHk~vIdGtRvF~~iA~~AH~La~~~ 37 (40)
T d1ijdb_ 8 QAEELHKHVIDGTRVFLVIAAIAHFLAFTL 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhc
Confidence 457888888899998888887766555443
No 5
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=6.58 E-value=1.3e+02 Score=16.31 Aligned_cols=31 Identities=6% Similarity=0.120 Sum_probs=19.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013599 345 NGKGARFATIVSVVTSIAIGVFFFILILIFH 375 (439)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (439)
+-++..+.+..+......++++.=++.+.-.
T Consensus 10 EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wr 40 (43)
T d1lghb_ 10 EAIAVHDQFKTTFSAFIILAAVAHVLVWVWK 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456677777777777666666555554433
No 6
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=4.24 E-value=8.1e+02 Score=19.31 Aligned_cols=17 Identities=18% Similarity=-0.142 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhhcCCC
Q 013599 329 FFAGTGVRVSNELGAGN 345 (439)
Q Consensus 329 i~~~~~p~i~~~~g~~~ 345 (439)
+.......++...+++.
T Consensus 300 ~~~~~~g~~~~~~~~~~ 316 (447)
T d1pw4a_ 300 PGTLLCGWMSDKVFRGN 316 (447)
T ss_dssp HHHHHHHHHHHHTSTTC
T ss_pred hhhhhhhhhhhhccccc
Confidence 34444455556555443
No 7
>d1i8ya_ g.3.16.1 (A:) N-terminal domain of granulin-1 {Carp (Cyprinus carpio) [TaxId: 7962]}
Probab=3.85 E-value=85 Score=14.68 Aligned_cols=6 Identities=17% Similarity=0.545 Sum_probs=2.8
Q ss_pred cceecc
Q 013599 433 GNRLWH 438 (439)
Q Consensus 433 ~~G~w~ 438 (439)
.+|+|+
T Consensus 18 pygvw~ 23 (28)
T d1i8ya_ 18 PYGVWY 23 (28)
T ss_dssp TTSCEE
T ss_pred CcccEE
Confidence 345553
No 8
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=3.83 E-value=3.5e+02 Score=14.44 Aligned_cols=31 Identities=3% Similarity=-0.014 Sum_probs=17.7
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013599 341 LGAGNGKGARFATIVSVVTSIAIGVFFFILI 371 (439)
Q Consensus 341 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (439)
.|+-|.+.-.|.+.-.+++..-.++.+..++
T Consensus 5 HG~MDi~vQEkTF~gFi~~~t~~~i~~i~~l 35 (43)
T d1qled_ 5 HGEMDIRHQQATFAGFIKGATWVSILSIAVL 35 (43)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666665554444444333
No 9
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=3.64 E-value=7.1e+02 Score=17.70 Aligned_cols=33 Identities=9% Similarity=0.046 Sum_probs=24.0
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013599 341 LGAGNGKGARFATIVSVVTSIAIGVFFFILILI 373 (439)
Q Consensus 341 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (439)
.|+-+.++.++..++=...++..+..++++...
T Consensus 69 ~g~i~~~~~~~~l~kE~~vgll~G~~l~~i~~~ 101 (173)
T d2yvxa3 69 TRDLDLRDWRRVFLKEMGVGLLLGLTLSFLLVG 101 (173)
T ss_dssp TTCSCSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566678888888888888888877766544
No 10
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=3.61 E-value=8.3e+02 Score=18.45 Aligned_cols=49 Identities=14% Similarity=0.095 Sum_probs=34.2
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCc
Q 013599 337 VSNELGAGNGKGARFATIVSVVTSIAIGVFFFILILIFHNELALIFSSS 385 (439)
Q Consensus 337 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 385 (439)
-++..|++..+..+++.--..+=+...+...++....-......++.++
T Consensus 185 AA~~~GAs~~~~f~~I~lPl~~p~i~~~~il~fi~~~~~f~~~~~~~~~ 233 (290)
T d2r6gg1 185 AAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRD 233 (290)
T ss_dssp HHHHTTCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCCHHHHHHCCS
T ss_pred hHhhcCCCHHHHHHHHHHHhhhhhhhhHHHHHhhhhccccccceeccCC
Confidence 3566788888888888888888877777777776655554555554443
Done!