BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013602
(439 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 170/346 (49%), Gaps = 38/346 (10%)
Query: 103 LVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL--LERSGIFIVEGDI 160
L+TG AGF+G+++ L + V+GLDNF+ + +L + + + + S +EGDI
Sbjct: 42 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 101
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
D+ +++ V HV+H AA V ++ +P + +NI G +++L KNA Q +
Sbjct: 102 RDLTTCEQVMKGVD--HVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ-S 158
Query: 221 IVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFT 280
+A+SSS YG + +P E++ P S YA TK E A Y YG GLR+F
Sbjct: 159 FTYAASSSTYGDHPALPKVEEN-IGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFN 217
Query: 281 VYGPWGRPDMAYFFFTRDILNRKSIPIFESPD-----HGTVARDFTYIDDIVK-GCLAAL 334
V+G P+ AY ++ + + + + D G +RDF YID++++ L+AL
Sbjct: 218 VFGRRQDPNGAY----AAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSAL 273
Query: 335 DTAEXXXXXXXXXXXXAQLRVFNLG-------NTSPVPVSDLVSILERLLKVKAKRNIMK 387
A+ ++N+ N + D ++++ + K+ K +
Sbjct: 274 ------------AKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIK---YR 318
Query: 388 LPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYAG 433
R+GDV + A+++ A L Y+P ++ GL+ + WY+ + G
Sbjct: 319 EFRSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRFLKG 364
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 170/346 (49%), Gaps = 38/346 (10%)
Query: 103 LVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL--LERSGIFIVEGDI 160
L+TG AGF+G+++ L + V+GLDNF+ + +L + + + + S +EGDI
Sbjct: 29 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 88
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
D+ +++ V HV+H AA V ++ +P + +NI G +++L KNA Q +
Sbjct: 89 RDLTTCEQVMKGVD--HVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ-S 145
Query: 221 IVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFT 280
+A+SSS YG + +P E++ P S YA TK E A Y YG GLR+F
Sbjct: 146 FTYAASSSTYGDHPALPKVEEN-IGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFN 204
Query: 281 VYGPWGRPDMAYFFFTRDILNRKSIPIFESPD-----HGTVARDFTYIDDIVK-GCLAAL 334
V+G P+ AY ++ + + + + D G +RDF YID++++ L+AL
Sbjct: 205 VFGRRQDPNGAY----AAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSAL 260
Query: 335 DTAEXXXXXXXXXXXXAQLRVFNLG-------NTSPVPVSDLVSILERLLKVKAKRNIMK 387
A+ ++N+ N + D ++++ + K+ K +
Sbjct: 261 ------------AKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIK---YR 305
Query: 388 LPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYAG 433
R+GDV + A+++ A L Y+P ++ GL+ + WY+ + G
Sbjct: 306 EFRSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRFLKG 351
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 170/346 (49%), Gaps = 38/346 (10%)
Query: 103 LVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL--LERSGIFIVEGDI 160
L+TG AGF+G+++ L + V+GLDNF+ + +L + + + + S +EGDI
Sbjct: 23 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 82
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
D+ +++ V HV+H AA V ++ +P + +NI G +++L KNA Q +
Sbjct: 83 RDLTTCEQVMKGVD--HVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ-S 139
Query: 221 IVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFT 280
+A+SSS YG + +P E++ P S YA TK E A Y YG GLR+F
Sbjct: 140 FTYAASSSTYGDHPALPKVEEN-IGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFN 198
Query: 281 VYGPWGRPDMAYFFFTRDILNRKSIPIFESPD-----HGTVARDFTYIDDIVK-GCLAAL 334
V+G P+ AY ++ + + + + D G +RDF YID++++ L+AL
Sbjct: 199 VFGRRQDPNGAY----AAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSAL 254
Query: 335 DTAEXXXXXXXXXXXXAQLRVFNLG-------NTSPVPVSDLVSILERLLKVKAKRNIMK 387
A+ ++N+ N + D ++++ + K+ K +
Sbjct: 255 ------------AKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIK---YR 299
Query: 388 LPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYAG 433
R+GDV + A+++ A L Y+P ++ GL+ + WY+ + G
Sbjct: 300 EFRSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRFLKG 345
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 170/346 (49%), Gaps = 38/346 (10%)
Query: 103 LVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL--LERSGIFIVEGDI 160
L+TG AGF+G+++ L + V+GLDNF+ + +L + + + + S +EGDI
Sbjct: 29 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 88
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
D+ +++ V HV+H AA V ++ +P + +NI G +++L KNA Q +
Sbjct: 89 RDLTTCEQVMKGVD--HVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ-S 145
Query: 221 IVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFT 280
+A+SSS YG + +P E++ P S YA TK E A Y YG GLR+F
Sbjct: 146 FTYAASSSTYGDHPALPKVEEN-IGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFN 204
Query: 281 VYGPWGRPDMAYFFFTRDILNRKSIPIFESPD-----HGTVARDFTYIDDIVK-GCLAAL 334
V+G P+ AY ++ + + + + D G +RDF YID++++ L+AL
Sbjct: 205 VFGRRQDPNGAY----AAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSAL 260
Query: 335 DTAEXXXXXXXXXXXXAQLRVFNLG-------NTSPVPVSDLVSILERLLKVKAKRNIMK 387
A+ ++N+ N + D ++++ + K+ K +
Sbjct: 261 ------------AKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIK---YR 305
Query: 388 LPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYAG 433
R+GDV + A+++ A L Y+P ++ GL+ + WY+ + G
Sbjct: 306 EFRSGDVRASQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRFLKG 351
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 160/339 (47%), Gaps = 30/339 (8%)
Query: 103 LVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLER--SGIFIVEGDI 160
L+TG AGF+G+++ L + V+GLDNF + +L + R + E+ S ++GDI
Sbjct: 31 LITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDI 90
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
++ +V+H AA V ++ +P + +NI G +++L ++A Q +
Sbjct: 91 RNLDDCNNA--CAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ-S 147
Query: 221 IVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFT 280
+A+SSS YG + +P E D +P S YA TK E A ++ YG S GLR+F
Sbjct: 148 FTYAASSSTYGDHPGLPKVE-DTIGKPLSPYAVTKYVNELYADVFSRCYGFSTIGLRYFN 206
Query: 281 VYGPWGRPDMAYFFFTRDILNRKSIPIFESPD-----HGTVARDFTYIDDIVKGCLAALD 335
V+G P+ AY ++ + + + + D G +RDF YI++ V+ L A
Sbjct: 207 VFGRRQDPNGAY----AAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAAT 262
Query: 336 TAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKA----KRNIMKLPRN 391
A+ +V+N+ ++ L L L + + + R
Sbjct: 263 AG-----------LDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFRE 311
Query: 392 GDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSY 430
GDV + A+IS A + LGY P D+ G+ + WY+ +
Sbjct: 312 GDVRHSLADISKAAKLLGYAPKYDVSAGVALAMPWYIMF 350
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/351 (28%), Positives = 159/351 (45%), Gaps = 45/351 (12%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYD-----PSLKKARQALLERSGIFIV 156
VLVTG AG++G+H L G + +DNF++ + P + Q L RS +
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRS-VEFE 63
Query: 157 EGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN 216
E DI D L++LF SF V+H A V ++Q P Y N+ G + LLE+ K A+
Sbjct: 64 EMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMK-AH 122
Query: 217 PQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAH-------TYNHIY 269
+V++SS++VYG +P E T + Y +K EE+ T+N +
Sbjct: 123 GVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVL 182
Query: 270 GLSLTGLRFFTVYG----------PWGRPDMAYFFFTR-DILNRKSIPIFES---PDHGT 315
LR+F G P G P+ + ++ I R+++ +F + + GT
Sbjct: 183 ------LRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGT 236
Query: 316 VARDFTYIDDIVKGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILER 375
RD+ ++ D+ KG +AAL + R++NLG + V +V +E+
Sbjct: 237 GVRDYIHVVDLAKGHIAALRKLK----------EQCGCRIYNLGTGTGYSVLQMVQAMEK 286
Query: 376 LLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRW 426
K ++ R GDV +AN SLAQ ELG+ L + RW
Sbjct: 287 ASGKKIPYKVVA-RREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRW 336
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/351 (28%), Positives = 159/351 (45%), Gaps = 45/351 (12%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYD-----PSLKKARQALLERSGIFIV 156
VLVTG AG++G+H L G + +DNF++ + P + Q L RS +
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRS-VEFE 63
Query: 157 EGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN 216
E DI D L++LF SF V+H A V ++Q P Y N+ G + LLE+ K A+
Sbjct: 64 EMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMK-AH 122
Query: 217 PQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAH-------TYNHIY 269
+V++SS++VYG +P E T + Y +K EE+ T+N +
Sbjct: 123 GVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNVVL 182
Query: 270 GLSLTGLRFFTVYG----------PWGRPDMAYFFFTR-DILNRKSIPIFES---PDHGT 315
LR+F G P G P+ + ++ I R+++ +F + + GT
Sbjct: 183 ------LRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGT 236
Query: 316 VARDFTYIDDIVKGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILER 375
RD+ ++ D+ KG +AAL + R++NLG + V +V +E+
Sbjct: 237 GVRDYIHVVDLAKGHIAALRKLK----------EQCGCRIYNLGTGTGYSVLQMVQAMEK 286
Query: 376 LLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRW 426
K ++ R GDV +AN SLAQ ELG+ L + RW
Sbjct: 287 ASGKKIPYKVVA-RREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRW 336
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 100/351 (28%), Positives = 159/351 (45%), Gaps = 45/351 (12%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYD-----PSLKKARQALLERSGIFIV 156
VLVTG AG++G+H L G + +DNF++ + P + Q L RS +
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRS-VEFE 63
Query: 157 EGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN 216
E DI D L++LF SF V+H A + ++Q P Y N+ G + LLE+ K A+
Sbjct: 64 EMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMK-AH 122
Query: 217 PQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAH-------TYNHIY 269
+V++SS++VYG +P E T + Y +K EE+ T+N +
Sbjct: 123 GVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNVVL 182
Query: 270 GLSLTGLRFFTVYG----------PWGRPDMAYFFFTR-DILNRKSIPIFES---PDHGT 315
LR+F G P G P+ + ++ I R+++ +F + + GT
Sbjct: 183 ------LRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGT 236
Query: 316 VARDFTYIDDIVKGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILER 375
RD+ ++ D+ KG +AAL + R++NLG + V +V +E+
Sbjct: 237 GVRDYIHVVDLAKGHIAALRKLK----------EQCGCRIYNLGTGTGYSVLQMVQAMEK 286
Query: 376 LLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRW 426
K ++ R GDV +AN SLAQ ELG+ L + RW
Sbjct: 287 ASGKKIPYKVVA-RREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRW 336
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 104 bits (260), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 151/332 (45%), Gaps = 40/332 (12%)
Query: 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN----DYYDPSLKKARQALLERSGIFI 155
+ ++VTG AGF+G+H+ L G V+ +DN + ++ +PS + + L + S
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNPSAELHVRDLKDYSWGAG 60
Query: 156 VEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNA 215
++GD+ V H AA VR + P + + N+ ++LE +
Sbjct: 61 IKGDV-----------------VFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQT 103
Query: 216 NPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTG 275
+ +V+ASSS+VYG +P E++ +P S+Y A K AGE + TY ++G+
Sbjct: 104 GVR-TVVFASSSTVYGDADVIPTPEEEPY-KPISVYGAAKAAGEVMCATYARLFGVRCLA 161
Query: 276 LRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALD 335
+R+ V GP R + Y F + R++ + E GT + + Y+ D V+ LAA
Sbjct: 162 VRYANVVGPRLRHGVIYDFIMK---LRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWK 218
Query: 336 TAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKAK-RNIMKLPRN--- 391
E A N+GN V V D+ I+ +L ++ + R + P
Sbjct: 219 KFE---------EMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGW 269
Query: 392 -GDVPFTHANISLAQRELGYKPTTDLQTGLKK 422
GDV + ++ + G++PT +KK
Sbjct: 270 PGDVKYMTLAVTKLMKLTGWRPTMTSAEAVKK 301
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 155/345 (44%), Gaps = 35/345 (10%)
Query: 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSG---IFIV 156
+ VLVTG +G++G+H L + G V+ LDN + K++ ++ER G V
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNS-----KRSVLPVIERLGGKHPTFV 55
Query: 157 EGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN 216
EGDI + AL+ ++ + V+H A V ++Q P Y +N+ G + L+ + AN
Sbjct: 56 EGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN 115
Query: 217 PQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY-GLSLTG 275
+ +++SS++VYG N K+P+ E T P S Y +K E+I S+
Sbjct: 116 VK-NFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIAL 174
Query: 276 LRFFTVYG----------PWGRPDMAYFFFTRDILNRK-SIPIFES---PDHGTVARDFT 321
LR+F G P G P+ + + + R+ S+ IF + + GT RD+
Sbjct: 175 LRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYI 234
Query: 322 YIDDIVKGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKA 381
++ D+ G + A++ + ++NLG V D+V+ +
Sbjct: 235 HVMDLADGHVVAMEK----------LANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPV 284
Query: 382 KRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRW 426
+ R GD+P A+ S A REL ++ T L + W
Sbjct: 285 NYHFAPR-REGDLPACWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 155/345 (44%), Gaps = 35/345 (10%)
Query: 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSG---IFIV 156
+ VLVTG +G++G+H L + G V+ LDN + K++ ++ER G V
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNS-----KRSVLPVIERLGGKHPTFV 55
Query: 157 EGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN 216
EGDI + AL+ ++ + V+H A V ++Q P Y +N+ G + L+ + AN
Sbjct: 56 EGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN 115
Query: 217 PQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY-GLSLTG 275
+ +++SS++VYG N K+P+ E T P S Y +K E+I S+
Sbjct: 116 VK-NFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIAL 174
Query: 276 LRFFTVYG----------PWGRPDMAYFFFTRDILNRK-SIPIFES---PDHGTVARDFT 321
LR+F G P G P+ + + + R+ S+ IF + + GT RD+
Sbjct: 175 LRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYI 234
Query: 322 YIDDIVKGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKA 381
++ D+ G + A++ + ++NLG V D+V+ +
Sbjct: 235 HVMDLADGHVVAMEK----------LANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPV 284
Query: 382 KRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRW 426
+ R GD+P A+ S A REL ++ T L + W
Sbjct: 285 NYHFAPR-REGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/335 (27%), Positives = 160/335 (47%), Gaps = 28/335 (8%)
Query: 98 NGISVLVTGAAGFVGTH-VSAALKRRGDG-VLGLDNFNDYYDPSLKKARQALLERSGIFI 155
+ + +LVTG GF+G++ + L++ D V+ +D +P+ K L +
Sbjct: 2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKD---LEDDPRYTF 58
Query: 156 VEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNA 215
V+GD+ D L+K+L V V+HLAA++ V ++ +P ++HSN+ G +LLE +
Sbjct: 59 VKGDVADYELVKEL--VRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRE 116
Query: 216 NPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTG 275
NP+ V S+ VYG K F+E DR P+S Y+ATK A + + + Y L+ +
Sbjct: 117 NPEVRFVHVSTDEVYGDILKGSFTENDRL-MPSSPYSATKAASDMLVLGWTRTYNLNASI 175
Query: 276 LRFFTVYGPWGRPD-MAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAAL 334
R YGP+ P+ + R L K IPI+ + G RD+ Y++D V+ L
Sbjct: 176 TRCTNNYGPYQFPEKLIPKTIIRASLGLK-IPIYGT---GKNVRDWLYVEDHVRAIELVL 231
Query: 335 DTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNG-D 393
E ++N+ ++V I+ RL+ + + R G D
Sbjct: 232 LKGESR-------------EIYNISAGEEKTNLEVVKIILRLMGKGEELIELVEDRPGHD 278
Query: 394 VPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYL 428
+ ++ + + R+L ++P G+KK + WYL
Sbjct: 279 LRYSLDSWKIT-RDLKWRPKYTFDEGIKKTIDWYL 312
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 155/345 (44%), Gaps = 35/345 (10%)
Query: 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSG---IFIV 156
+ VLVTG +G++G+H L + G V+ LDN + K++ ++ER G V
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNS-----KRSVLPVIERLGGKHPTFV 55
Query: 157 EGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN 216
EGDI + AL+ ++ + V+H A V ++Q P Y +N+ G + L+ + AN
Sbjct: 56 EGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN 115
Query: 217 PQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY-GLSLTG 275
+ +++S+++VYG N K+P+ E T P S Y +K E+I S+
Sbjct: 116 VK-NFIFSSTATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIAL 174
Query: 276 LRFFTVYG----------PWGRPDMAYFFFTRDILNRK-SIPIFES---PDHGTVARDFT 321
LR+F G P G P+ + + + R+ S+ IF + + GT RD+
Sbjct: 175 LRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYI 234
Query: 322 YIDDIVKGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKA 381
++ D+ G + A++ + ++NLG V D+V+ +
Sbjct: 235 HVMDLADGHVVAMEK----------LANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPV 284
Query: 382 KRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRW 426
+ R GD+P A+ S A REL ++ T L + W
Sbjct: 285 NYHFAPR-REGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 155/345 (44%), Gaps = 35/345 (10%)
Query: 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSG---IFIV 156
+ VLVTG +G++G+H L + G V+ LDN + K++ ++ER G V
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNS-----KRSVLPVIERLGGKHPTFV 55
Query: 157 EGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN 216
EGDI + AL+ ++ + V+H A V ++Q P Y +N+ G + L+ + AN
Sbjct: 56 EGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN 115
Query: 217 PQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY-GLSLTG 275
+ +++S+++VYG N K+P+ E T P S Y +K E+I S+
Sbjct: 116 VK-NFIFSSAATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIAL 174
Query: 276 LRFFTVYG----------PWGRPDMAYFFFTRDILNRK-SIPIFES---PDHGTVARDFT 321
LR+F G P G P+ + + + R+ S+ IF + + GT RD+
Sbjct: 175 LRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYI 234
Query: 322 YIDDIVKGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKA 381
++ D+ G + A++ + ++NLG V D+V+ +
Sbjct: 235 HVMDLADGHVVAMEK----------LANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPV 284
Query: 382 KRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRW 426
+ R GD+P A+ S A REL ++ T L + W
Sbjct: 285 NYHFAPR-REGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 101 bits (252), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 154/345 (44%), Gaps = 35/345 (10%)
Query: 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSG---IFIV 156
+ VLVTG +G++G+H L + G V+ LDN + K++ ++ER G V
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNS-----KRSVLPVIERLGGKHPTFV 55
Query: 157 EGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN 216
EGDI + AL+ ++ + V+H A V ++Q P Y +N+ G + L+ + AN
Sbjct: 56 EGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN 115
Query: 217 PQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY-GLSLTG 275
+ +++S ++VYG N K+P+ E T P S Y +K E+I S+
Sbjct: 116 VK-NFIFSSVATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIAL 174
Query: 276 LRFFTVYG----------PWGRPDMAYFFFTRDILNRK-SIPIFES---PDHGTVARDFT 321
LR+F G P G P+ + + + R+ S+ IF + + GT RD+
Sbjct: 175 LRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYI 234
Query: 322 YIDDIVKGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKA 381
++ D+ G + A++ + ++NLG V D+V+ +
Sbjct: 235 HVMDLADGHVVAMEK----------LANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPV 284
Query: 382 KRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRW 426
+ R GD+P A+ S A REL ++ T L + W
Sbjct: 285 NYHFAPR-REGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 101 bits (252), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 154/345 (44%), Gaps = 35/345 (10%)
Query: 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSG---IFIV 156
+ VLVTG +G++G+H L + G V+ LDN + K++ ++ER G V
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNS-----KRSVLPVIERLGGKHPTFV 55
Query: 157 EGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN 216
EGDI + AL+ ++ + V+H A V ++Q P Y +N+ G + L+ + AN
Sbjct: 56 EGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN 115
Query: 217 PQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY-GLSLTG 275
+ +++SS++VYG K+P+ E T P S Y +K E+I S+
Sbjct: 116 VK-NFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIAL 174
Query: 276 LRFFTVYG----------PWGRPDMAYFFFTRDILNRK-SIPIFES---PDHGTVARDFT 321
LR+F G P G P+ + + + R+ S+ IF + + GT RD+
Sbjct: 175 LRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYI 234
Query: 322 YIDDIVKGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKA 381
++ D+ G + A++ + ++NLG V D+V+ +
Sbjct: 235 HVMDLADGHVVAMEK----------LANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPV 284
Query: 382 KRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRW 426
+ R GD+P A+ S A REL ++ T L + W
Sbjct: 285 NYHFAPR-REGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 101 bits (252), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 146/331 (44%), Gaps = 39/331 (11%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSL-KKARQALLERSGIFIVEGDI 160
+L+TG AGF+G H++ AL G+ V LD+ P + + LE+ + + E D+
Sbjct: 10 ILITGGAGFIGGHLARALVASGEEVTVLDDLR--VPPMIPPEGTGKFLEKPVLELEERDL 67
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
+D+ L V HLA+ V + + P Y+ N+ LL +C + P
Sbjct: 68 SDVRL------------VYHLASHKSVPRSFKQPLDYL-DNVDSGRHLLALCTSVG-VPK 113
Query: 221 IVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGL-RFF 279
+V S+ VYG +P E D P S YAA+K E +A + G+ RFF
Sbjct: 114 VVVGSTCEVYGQADTLPTPE-DSPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIVRFF 172
Query: 280 TVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEX 339
VYGP RPD ++L R +P+ G RDFTYI D+V +A +
Sbjct: 173 NVYGPGERPDALVPRLCANLLTRNELPV---EGDGEQRRDFTYITDVVDKLVALANRPLP 229
Query: 340 XXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHA 399
V N G+ + V+D++ IL+ A K PR ++ A
Sbjct: 230 S--------------VVNFGSGQSLSVNDVIRILQ--ATSPAAEVARKQPRPNEITEFRA 273
Query: 400 NISLAQRELGYKP-TTDLQTGLKKFVRWYLS 429
+ +L R++G + ++ G++ + W+ S
Sbjct: 274 DTALQTRQIGERSGGIGIEEGIRLTLEWWQS 304
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 155/345 (44%), Gaps = 35/345 (10%)
Query: 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSG---IFIV 156
+ VLVTG +G++G+H L + G V+ LDN + K++ ++ER G V
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNS-----KRSVLPVIERLGGKHPTFV 55
Query: 157 EGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN 216
EGDI + AL+ ++ + V+H A V ++Q P Y +N+ G + L+ + AN
Sbjct: 56 EGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN 115
Query: 217 PQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY-GLSLTG 275
+ +++S+++VYG N K+P+ E T P S + +K E+I S+
Sbjct: 116 VK-NFIFSSAATVYGDNPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIAL 174
Query: 276 LRFFTVYG----------PWGRPDMAYFFFTRDILNRK-SIPIFES---PDHGTVARDFT 321
LR+F G P G P+ + + + R+ S+ IF + + GT RD+
Sbjct: 175 LRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYI 234
Query: 322 YIDDIVKGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKA 381
++ D+ G + A++ + ++NLG V D+V+ +
Sbjct: 235 HVMDLADGHVVAMEK----------LANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPV 284
Query: 382 KRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRW 426
+ R GD+P A+ S A REL ++ T L + W
Sbjct: 285 NYHFAPR-REGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 154/345 (44%), Gaps = 35/345 (10%)
Query: 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSG---IFIV 156
+ VLVTG +G++G+H L + G V+ LDN + K++ ++ER G V
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNS-----KRSVLPVIERLGGKHPTFV 55
Query: 157 EGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN 216
EGDI + AL+ ++ + V+H A V ++Q P Y +N+ G + L+ + AN
Sbjct: 56 EGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN 115
Query: 217 PQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY-GLSLTG 275
+ +++S+++VYG K+P+ E T P S Y +K E+I S+
Sbjct: 116 VK-NFIFSSAATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIAL 174
Query: 276 LRFFTVYG----------PWGRPDMAYFFFTRDILNRK-SIPIFES---PDHGTVARDFT 321
LR+F G P G P+ + + + R+ S+ IF + + GT RD+
Sbjct: 175 LRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYI 234
Query: 322 YIDDIVKGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKA 381
++ D+ G + A++ + ++NLG V D+V+ +
Sbjct: 235 HVMDLADGHVVAMEK----------LANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPV 284
Query: 382 KRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRW 426
+ R GD+P A+ S A REL ++ T L + W
Sbjct: 285 NYHFAPR-REGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 154/345 (44%), Gaps = 35/345 (10%)
Query: 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSG---IFIV 156
+ VLVTG +G++G+H L + G V+ LDN + K++ ++ER G V
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNS-----KRSVLPVIERLGGKHPTFV 55
Query: 157 EGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN 216
EGDI + AL+ ++ + V+H A V ++Q P Y +N+ G + L+ + AN
Sbjct: 56 EGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN 115
Query: 217 PQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY-GLSLTG 275
+ +++SS++VYG K+P+ E T P S + +K E+I S+
Sbjct: 116 VK-NFIFSSSATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIAL 174
Query: 276 LRFFTVYG----------PWGRPDMAYFFFTRDILNRK-SIPIFES---PDHGTVARDFT 321
LR+F G P G P+ + + + R+ S+ IF + + GT RD+
Sbjct: 175 LRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYI 234
Query: 322 YIDDIVKGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKA 381
++ D+ G + A++ + ++NLG V D+V+ +
Sbjct: 235 HVMDLADGHVVAMEK----------LANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPV 284
Query: 382 KRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRW 426
+ R GD+P A+ S A REL ++ T L + W
Sbjct: 285 NYHFAPR-REGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 154/345 (44%), Gaps = 35/345 (10%)
Query: 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSG---IFIV 156
+ VLVTG +G++G+H L + G V+ LDN + K++ ++ER G V
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNS-----KRSVLPVIERLGGKHPTFV 55
Query: 157 EGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN 216
EGDI + AL+ ++ + V+H A V ++Q P Y +N+ G + L+ + AN
Sbjct: 56 EGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN 115
Query: 217 PQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY-GLSLTG 275
+ +++S+++VYG K+P+ E T P S + +K E+I S+
Sbjct: 116 VK-NFIFSSAATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIAL 174
Query: 276 LRFFTVYG----------PWGRPDMAYFFFTRDILNRK-SIPIFES---PDHGTVARDFT 321
LR+F G P G P+ + + + R+ S+ IF + + GT RD+
Sbjct: 175 LRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYI 234
Query: 322 YIDDIVKGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKA 381
++ D+ G + A++ + ++NLG V D+V+ +
Sbjct: 235 HVMDLADGHVVAMEK----------LANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPV 284
Query: 382 KRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRW 426
+ R GD+P A+ S A REL ++ T L + W
Sbjct: 285 NYHFAPR-REGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 145/328 (44%), Gaps = 36/328 (10%)
Query: 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGD 159
+ ++VTG AGF+G+H+ L G V+ +D S + + L + S ++GD
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDIVQRDTGGSAELHVRDLKDYSWGAGIKGD 60
Query: 160 INDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQP 219
+ V H AA VR + P + + N+ ++LE + +
Sbjct: 61 V-----------------VFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVR- 102
Query: 220 AIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFF 279
+V+ASSS+VYG +P E++ +P S+Y A K AGE + TY ++G+ +R+
Sbjct: 103 TVVFASSSTVYGDADVIPTPEEEPY-KPISVYGAAKAAGEVMCATYARLFGVRCLAVRYA 161
Query: 280 TVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEX 339
V GP R + Y F + R++ + E GT + + Y+ D V+ LAA E
Sbjct: 162 NVVGPRLRHGVIYDFIMK---LRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFE- 217
Query: 340 XXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKAK-RNIMKLPRN----GDV 394
A N+GN V V D+ I+ +L ++ + R + P GDV
Sbjct: 218 --------EMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDV 269
Query: 395 PFTHANISLAQRELGYKPTTDLQTGLKK 422
+ ++ + G++PT +KK
Sbjct: 270 KYMTLAVTKLMKLTGWRPTMTSAEAVKK 297
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 149/342 (43%), Gaps = 38/342 (11%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
S+L+ G AG++G+H L G V+ +DN ++ ++ + G GD+
Sbjct: 3 SILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITE---------GAKFYNGDL 53
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
D A L+ +F + VMH AA + V +M+ P Y ++N+ G + LLEV
Sbjct: 54 RDKAFLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDK- 112
Query: 221 IVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFT 280
+++S+++ YG V ++ P + Y TK A E++ H Y+ L R+F
Sbjct: 113 FIFSSTAATYG-EVDVDLITEETMTNPTNTYGETKLAIEKMLHWYSQASNLRYKIFRYFN 171
Query: 281 VYG--PWG------RPDMAYFFFTRDIL--NRKSIPIF----ESPDHGTVARDFTYIDDI 326
V G P G RP+ + R+ I +F +PD GT RD+ +++D+
Sbjct: 172 VAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPD-GTCIRDYIHVEDL 230
Query: 327 VKGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIM 386
V L + + +NLGN + V ++V + + + +
Sbjct: 231 VAAHFLGLKDLQ----------NGGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVA 280
Query: 387 KLPRNGDVPFTHANISLAQRELGYKPT-TDLQTGLKKFVRWY 427
R GD A+ A+ +LG+ P +++T ++ W+
Sbjct: 281 P-RRAGDPARLVASSQKAKEKLGWDPRYVNVKTIIEHAWNWH 321
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 142/326 (43%), Gaps = 34/326 (10%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
++VTG AGF+G+HV L + V+ +DN + + + +A A L ++ + DI
Sbjct: 4 IVVTGGAGFIGSHVVDKLSESNEIVV-IDNLSSGNEEFVNEA--ARLVKADL--AADDIK 58
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
D LK V H+AA VR +NP+ +N+ LLE + A I
Sbjct: 59 DY--LK------GAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVS-RI 109
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 281
V+ S+S+VYG +P E D P SLY A+K A E + +Y H + + RF V
Sbjct: 110 VFTSTSTVYGEAKVIPTPE-DYPTHPISLYGASKLACEALIESYCHTFDMQAWIYRFANV 168
Query: 282 YGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEXXX 341
G + Y F + N + + I +G + + YI D V L L E
Sbjct: 169 IGRRSTHGVIYDFIMKLKRNPEELEIL---GNGEQNKSYIYISDCVDAMLFGLRGDE--- 222
Query: 342 XXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPR--NGDVPFTHA 399
++ +FN+G+ + V + I+ L + + R GDVP
Sbjct: 223 ----------RVNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLL 272
Query: 400 NISLAQRELGYKPTTDLQTGLKKFVR 425
+I +R LG+KP + + ++ VR
Sbjct: 273 SIEKLKR-LGWKPRYNSEEAVRMAVR 297
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 143/335 (42%), Gaps = 31/335 (9%)
Query: 100 ISVLVTGAAGFVGTHVSAAL------KRRGDGVLGLDNFNDYYDPSLKKARQALLERS-G 152
+ +LVTG AGF+G+H L D V+ LD+ + +A A ++
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLT----YAGNRANLAPVDADPR 56
Query: 153 IFIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVC 212
+ V GDI D LL + ++ ++H AA++ V ++ + + +N+ G +LL+
Sbjct: 57 LRFVHGDIRDAGLLAR--ELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCA 114
Query: 213 KNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLS 272
+A +V S++ VYG ++E +P S YAA+K + +A Y+ YGL
Sbjct: 115 VDAGVG-RVVHVSTNQVYGSIDSGSWTESSPL-EPNSPYAASKAGSDLVARAYHRTYGLD 172
Query: 273 LTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLA 332
+ R YGP+ P+ F ++L+ ++P++ G R++ + DD +G
Sbjct: 173 VRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGD---GANVREWVHTDDHCRGIAL 229
Query: 333 ALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNG 392
L ++++G + +L IL L R G
Sbjct: 230 VLAGGRAG-------------EIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKG 276
Query: 393 DVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWY 427
+ +RELGY+P GL + VRWY
Sbjct: 277 HDLRYSLDGGKIERELGYRPQVSFADGLARTVRWY 311
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 142/335 (42%), Gaps = 31/335 (9%)
Query: 100 ISVLVTGAAGFVGTHVSAAL------KRRGDGVLGLDNFNDYYDPSLKKARQALLERS-G 152
+ +LVTG AGF+G+H L D V+ LD+ + +A A ++
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLT----YAGNRANLAPVDADPR 56
Query: 153 IFIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVC 212
+ V GDI D LL + ++ ++H AA++ V ++ + + +N+ G +LL+
Sbjct: 57 LRFVHGDIRDAGLLAR--ELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCA 114
Query: 213 KNANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLS 272
+A +V S+ VYG ++E +P S YAA+K + +A Y+ YGL
Sbjct: 115 VDAGVG-RVVHVSTDEVYGSIDSGSWTESSPL-EPNSPYAASKAGSDLVARAYHRTYGLD 172
Query: 273 LTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLA 332
+ R YGP+ P+ F ++L+ ++P++ G R++ + DD +G
Sbjct: 173 VRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGD---GANVREWVHTDDHCRGIAL 229
Query: 333 ALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNG 392
L ++++G + +L IL L R G
Sbjct: 230 VLAGGRAG-------------EIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKG 276
Query: 393 DVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWY 427
+ +RELGY+P GL + VRWY
Sbjct: 277 HDLRYSLDGGKIERELGYRPQVSFADGLARTVRWY 311
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 113/244 (46%), Gaps = 14/244 (5%)
Query: 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGD 159
+ VLVTG AGF+G+H+ L RG V LDN ++ K G+ D
Sbjct: 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPK---------GVPFFRVD 51
Query: 160 INDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQP 219
+ D +++ F THV H AAQA V+ ++++P N+ G ++LLE C+ +
Sbjct: 52 LRDKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEK 111
Query: 220 AIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFF 279
+ ++ ++YG + +E+ +P S YAA+K A E Y YGL LR+
Sbjct: 112 LVFASTGGAIYGEVPEGERAEETWPPRPKSPYAASKAAFEHYLSVYGQSYGLKWVSLRYG 171
Query: 280 TVYGPWGRPD---MAYFFFTRDILNRKSIPIF--ESPDHGTVARDFTYIDDIVKGCLAAL 334
VYGP P F +L + ++ ++P RD+ Y+ D+ + AL
Sbjct: 172 NVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHALAL 231
Query: 335 DTAE 338
+ E
Sbjct: 232 FSLE 235
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 99/355 (27%), Positives = 146/355 (41%), Gaps = 51/355 (14%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNF-NDYYDPSLKKARQALLERSGIFIVEGDI 160
VLVTG AG++G+H L G + DN N YD AR +L + I E D+
Sbjct: 14 VLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSV---ARLEVLTKHHIPFYEVDL 70
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
D L+K+F V+H A V + Q P Y H+NI G V LLE+ + N
Sbjct: 71 CDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVS-K 129
Query: 221 IVWASSSSVYGLNTK----VPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYG-----L 271
V++SS++VYG T+ +P E+ P + Y TK A E I N +Y
Sbjct: 130 FVFSSSATVYGDATRFPNMIPIPEECPLG-PTNPYGHTKYAIENIL---NDLYNSDKKSW 185
Query: 272 SLTGLRFFTVYG----------PWGRPDMAYFFFTRDILNRKSIPIFESPDH----GTVA 317
LR+F G P G P+ + + + R+ D+ GT
Sbjct: 186 KFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPI 245
Query: 318 RDFTYIDDIVKGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLL 377
RD+ ++ D+ KG +AAL E R +NLG+ V ++
Sbjct: 246 RDYIHVVDLAKGHIAALQYLE------AYNENEGLCREWNLGSGKGSTVFEVYHAF---- 295
Query: 378 KVKAKRNIMKLP------RNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRW 426
K + + LP R GDV A A+REL ++ ++ K +W
Sbjct: 296 ---CKASGIDLPYKVTGRRAGDVLNLTAKPDRAKRELKWQTELQVEDSCKDLWKW 347
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 88.2 bits (217), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 88/349 (25%), Positives = 150/349 (42%), Gaps = 40/349 (11%)
Query: 102 VLVTGAAGFVGTH-VSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
+L+TG AGF+G+ V + D V+ +D Y + A A ER V DI
Sbjct: 4 ILITGGAGFIGSALVRYIINETSDAVVVVDKLT-YAGNLMSLAPVAQSERFAFEKV--DI 60
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCK------N 214
D A L ++F VMHLAA++ V ++ P +++ +NI G +LLE +
Sbjct: 61 CDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALT 120
Query: 215 ANPQPAIVW--ASSSSVYG-LNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGL 271
+ + A + S+ VYG L++ F + P+S Y+A+K + + + + YGL
Sbjct: 121 EDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTYGL 180
Query: 272 SLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCL 331
YGP+ P+ + L KS+P++ +G RD+ Y++D +
Sbjct: 181 PTLITNCSNNYGPYHFPEKLIPLMILNALAGKSLPVY---GNGQQIRDWLYVEDHARALY 237
Query: 332 AALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLK---------VKAK 382
T + +N+G + D+V + LL+ V
Sbjct: 238 CVATTGKVG-------------ETYNIGGHNERKNLDVVETICELLEELAPNKPHGVAHY 284
Query: 383 RNIMKL--PRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLS 429
R+++ R G + S RELG P ++G++K V+WYL+
Sbjct: 285 RDLITFVADRPGHDLRYAIDASKIARELGCVPQETFESGMRKTVQWYLA 333
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 91/352 (25%), Positives = 171/352 (48%), Gaps = 44/352 (12%)
Query: 101 SVLVTGAAGFVGTHVSAALKRR--GDGVLGLDNF--NDYYD---PSLKKARQALLERSGI 153
++L+TG AGFVG++++ + V+ LD F N + PS + L+ G
Sbjct: 12 TILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGE 71
Query: 154 FIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCK 213
++ DIN+ L++L + + F ++ H AA + M N + +N ++LLE+ +
Sbjct: 72 -VIAADINNPLDLRRL-EKLHFDYLFHQAAVSDT--TMLNQELVMKTNYQAFLNLLEIAR 127
Query: 214 NANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEE--IAHTYNHIYGL 271
+ + +++ASS+ VYG NTK P + + + P ++Y +K +E ++H+ +++
Sbjct: 128 --SKKAKVIYASSAGVYG-NTKAP-NVVGKNESPENVYGFSKLCMDEFVLSHSNDNVQ-- 181
Query: 272 SLTGLRFFTVYGP--WGRPDMAYFFFTRDI--LNRKSIPIFESPDHGTVARDFTYIDDIV 327
GLR+F VYGP + + A + + K + +FE G RDF YI+D++
Sbjct: 182 --VGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFE---FGEQLRDFVYIEDVI 236
Query: 328 KGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMK 387
+ + A+ + V+N+G + +++VSIL+ L K +K
Sbjct: 237 QANVKAMKAQKSG--------------VYNVGYSQARSYNEIVSILKEHLG-DFKVTYIK 281
Query: 388 LPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYAGGKKAAG 439
P T A+I +L Y P DL++G+K ++ + + G++A G
Sbjct: 282 NPYAFFQKHTQAHIEPTILDLDYTPLYDLESGIKDYLPHIHAIFK-GQRAKG 332
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/362 (23%), Positives = 148/362 (40%), Gaps = 58/362 (16%)
Query: 100 ISVLVTGAAGFVGTHV-SAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEG 158
+ +L+TG AGF+G+ V +K D V+ +D Y +L+ + E +
Sbjct: 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLT--YAGNLESLSD-ISESNRYNFEHA 57
Query: 159 DINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQ 218
DI D A + ++F+ VMHLAA++ V ++ P +++ +NI G +LLEV +
Sbjct: 58 DICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARK---- 113
Query: 219 PAIVWA---------------SSSSVYG---------LNTKVPFSEKDRTDQPASLYAAT 254
W+ S+ VYG + +P + P+S Y+A+
Sbjct: 114 ---YWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSAS 170
Query: 255 KKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHG 314
K + + + + YGL YGP+ P+ + L K +PI+ D
Sbjct: 171 KASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQ- 229
Query: 315 TVARDFTYIDDIVKGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILE 374
RD+ Y++D + + + +N+G + D+V +
Sbjct: 230 --IRDWLYVEDHARALHMVVTEGKAG-------------ETYNIGGHNEKKNLDVVFTIC 274
Query: 375 RLLKV---KAKRNIMKLPRNGDVPFTHANISL----AQRELGYKPTTDLQTGLKKFVRWY 427
LL KA ++ D P ++ RELG+KP ++G++K V WY
Sbjct: 275 DLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWY 334
Query: 428 LS 429
L+
Sbjct: 335 LA 336
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 79/333 (23%), Positives = 146/333 (43%), Gaps = 24/333 (7%)
Query: 98 NGISVLVTGAAGFVGTH-VSAALKR-RGDGVLGLDNFNDYYDPSLKKARQALLERSGIFI 155
N ++LVTG AGF+G++ V L+ ++ D Y +L + ++ + +
Sbjct: 23 NAXNILVTGGAGFIGSNFVHYXLQSYETYKIINFDALT--YSGNLNNVK-SIQDHPNYYF 79
Query: 156 VEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNA 215
V+G+I + LL+ + +++ AA++ V +++NP + +N+ G V+LLE+ K
Sbjct: 80 VKGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKY 139
Query: 216 NPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTG 275
P +V S+ VYG K ++ P S Y+++K + + IA Y Y L +
Sbjct: 140 -PHIKLVQVSTDEVYGSLGKTGRFTEETPLAPNSPYSSSKASADXIALAYYKTYQLPVIV 198
Query: 276 LRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALD 335
R YGP+ P+ + L K +P++ G RD+ ++ D L
Sbjct: 199 TRCSNNYGPYQYPEKLIPLXVTNALEGKKLPLY---GDGLNVRDWLHVTDHCSAIDVVLH 255
Query: 336 TAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLP-RNGDV 394
V+N+G + ++V + LL K K++I + R G
Sbjct: 256 KGRVG-------------EVYNIGGNNEKTNVEVVEQIITLLG-KTKKDIEYVTDRLGHD 301
Query: 395 PFTHANISLAQRELGYKPTTDLQTGLKKFVRWY 427
N + E ++P + GL++ V+WY
Sbjct: 302 RRYAINAEKXKNEFDWEPKYTFEQGLQETVQWY 334
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 142/331 (42%), Gaps = 34/331 (10%)
Query: 103 LVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIND 162
L+TG AGFVG +++ L + V G N+ P+++ ++ DI D
Sbjct: 16 LITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLPNVE-------------MISLDIMD 62
Query: 163 MALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIV 222
+KK+ + ++ HLAA++ V+ + N +N+ G + +L+ +++N I+
Sbjct: 63 SQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRIL 122
Query: 223 WASSSSVYG--LNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFT 280
SS YG L + P SE+++ +P S Y +K + +A Y YG+ + R F
Sbjct: 123 TIGSSEEYGMILPEESPVSEENQL-RPMSPYGVSKASVGMLARQYVKAYGMDIIHTRTFN 181
Query: 281 VYGPWGRPDMAYFFFTRDILN---RKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTA 337
GP F + I++ K PI + + V RDFT + DIV+
Sbjct: 182 HIGPGQSLGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAV-RDFTDVRDIVQAYWLLSQYG 240
Query: 338 EXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLP-RNGDVPF 396
+ V+N+ + + D++ +L + VK + L R +VP
Sbjct: 241 KTGD-------------VYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQLRPSEVPT 287
Query: 397 THANISLAQRELGYKPTTDLQTGLKKFVRWY 427
+ + G+KP L+ L + ++ Y
Sbjct: 288 LIGSNKRLKDSTGWKPRIPLEKSLFEILQSY 318
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 150/345 (43%), Gaps = 38/345 (11%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
++LVTG AG++G+H + L G V+ DN + ++ + + + E D+
Sbjct: 7 TILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFH--ETDV 64
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
+D L ++FD T +H AA V ++ P Y +N+ L+SLL V + +
Sbjct: 65 SDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVK-R 123
Query: 221 IVWASSSSVYGLNTKVPFSEKDRTDQPASL---YAATKKAGEEIAHTYNHIY-GLSLTGL 276
IV++SS++VYG+ + P E P S Y TK E+I + L
Sbjct: 124 IVFSSSATVYGVPERSPIDET----FPLSATNPYGQTKLMAEQILRDVEAADPSWRVATL 179
Query: 277 RFFTVYG----------PWGRPDMAYFFFTRDILNR-KSIPIFES----PDHGTVARDFT 321
R+F G P G P+ + + + + + + +F S PD GT RD+
Sbjct: 180 RYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPD-GTGVRDYI 238
Query: 322 YIDDIVKGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKA 381
++ D+ +G +AALD E A L V NLG V ++V E+
Sbjct: 239 HVVDLARGHIAALDALE---------RRDASLTV-NLGTGRGYSVLEVVRAFEKASGRAV 288
Query: 382 KRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRW 426
++ R GDV +AN + A +G+K DL+ RW
Sbjct: 289 PYELVAR-RPGDVAECYANPAAAAETIGWKAERDLERMCADHWRW 332
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 143/344 (41%), Gaps = 42/344 (12%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+L+TG AGFVG+H++ L G V +DNF K+ + + ++ D+
Sbjct: 8 ILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFT----GRKRNVEHWIGHENFELINHDV- 62
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
++ L+ + + HLA+ A M NP + +N G +++L + K + +
Sbjct: 63 ----VEPLY--IEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR--L 114
Query: 222 VWASSSSVYGLNTKVPFSE----KDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLR 277
+ AS+S VYG P SE P + Y K+ E + + Y G+ + R
Sbjct: 115 LLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVAR 174
Query: 278 FFTVYGPWGRPDMAYFF--FTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALD 335
F +GP + F L + + ++ S G+ R F Y+ D+V G +A ++
Sbjct: 175 IFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGS---GSQTRAFQYVSDLVNGLVALMN 231
Query: 336 TAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVP 395
+ NLGN + + +++ L V + I L D P
Sbjct: 232 SNVSSP--------------VNLGNPEEHTILEFAQLIKNL--VGSGSEIQFLSEAQDDP 275
Query: 396 FTHA-NISLAQRELGYKPTTDLQTGLKKFVRWY---LSYYAGGK 435
+I A+ LG++P L+ GL K + ++ L Y A +
Sbjct: 276 QKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQ 319
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 83/341 (24%), Positives = 144/341 (42%), Gaps = 47/341 (13%)
Query: 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGD 159
+ + +TGA GF+ +H++ LK G V+ D K + + E +F E
Sbjct: 30 LKISITGAGGFIASHIARRLKHEGHYVIASD----------WKKNEHMTED--MFCDEFH 77
Query: 160 INDMALLKKLFDVVS-FTHVMHLAAQ-AGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANP 217
+ D+ +++ V HV +LAA G+ + N + +++N +++E + N
Sbjct: 78 LVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAAR-ING 136
Query: 218 QPAIVWASSSSVYGL-----NTKVPFSEKDR-TDQPASLYAATKKAGEEIAHTYNHIYGL 271
+ASS+ +Y T V E D +P Y K A EE+ YN +G+
Sbjct: 137 IKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGI 196
Query: 272 SLTGLRFFTVYGPWGR----PDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIV 327
RF +YGP+G + A F R + S FE G R FT+ID+ V
Sbjct: 197 ECRIGRFHNIYGPFGTWKGGREAAPAAFCRKA--QTSTDRFEMWGDGLQTRSFTFIDECV 254
Query: 328 KGCLAALDTAEXXXXXXXXXXXXAQLRV-FNLGNTSPVPVSDLVSILERLLKVKAKR-NI 385
+G L + R N+G+ V ++++ E +L + K+ I
Sbjct: 255 EGVL---------------RLTKSDFREPVNIGSDEMVSMNEMA---EMVLSFEEKKLPI 296
Query: 386 MKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRW 426
+P V +++ +L + +LG+ P L+ GL+ W
Sbjct: 297 HHIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFW 337
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 83/341 (24%), Positives = 144/341 (42%), Gaps = 47/341 (13%)
Query: 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGD 159
+ + +TGA GF+ +H++ LK G V+ D K + + E +F E
Sbjct: 30 LKISITGAGGFIASHIARRLKHEGHYVIASD----------WKKNEHMTE--DMFCDEFH 77
Query: 160 INDMALLKKLFDVVS-FTHVMHLAAQ-AGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANP 217
+ D+ +++ V HV +LAA G+ + N + +++N +++E + N
Sbjct: 78 LVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAAR-ING 136
Query: 218 QPAIVWASSSSVYGL-----NTKVPFSEKDR-TDQPASLYAATKKAGEEIAHTYNHIYGL 271
+ASS+ +Y T V E D +P Y K A EE+ YN +G+
Sbjct: 137 IKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGI 196
Query: 272 SLTGLRFFTVYGPWGR----PDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIV 327
RF +YGP+G + A F R + S FE G R FT+ID+ V
Sbjct: 197 ECRIGRFHNIYGPFGTWKGGREKAPAAFCRKA--QTSTDRFEMWGDGLQTRSFTFIDECV 254
Query: 328 KGCLAALDTAEXXXXXXXXXXXXAQLRV-FNLGNTSPVPVSDLVSILERLLKVKAKR-NI 385
+G L + R N+G+ V ++++ E +L + K+ I
Sbjct: 255 EGVL---------------RLTKSDFREPVNIGSDEMVSMNEMA---EMVLSFEEKKLPI 296
Query: 386 MKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRW 426
+P V +++ +L + +LG+ P L+ GL+ W
Sbjct: 297 HHIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFW 337
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 144/341 (42%), Gaps = 47/341 (13%)
Query: 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGD 159
+ + +TGA GF+ +H++ LK G V+ D K + + E +F E
Sbjct: 30 LKISITGAGGFIASHIARRLKHEGHYVIASD----------WKKNEHMTE--DMFCDEFH 77
Query: 160 INDMALLKKLFDVVS-FTHVMHLAAQ-AGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANP 217
+ D+ +++ V HV +LAA G+ + N + +++N +++E + N
Sbjct: 78 LVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAAR-ING 136
Query: 218 QPAIVWASSSSVYGL-----NTKVPFSEKDR-TDQPASLYAATKKAGEEIAHTYNHIYGL 271
+ASS+ +Y T V E D +P Y + A EE+ YN +G+
Sbjct: 137 IKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLERLATEELCKHYNKDFGI 196
Query: 272 SLTGLRFFTVYGPWGR----PDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIV 327
RF +YGP+G + A F R + S FE G R FT+ID+ V
Sbjct: 197 ECRIGRFHNIYGPFGTWKGGREKAPAAFCRKA--QTSTDRFEMWGDGLQTRSFTFIDECV 254
Query: 328 KGCLAALDTAEXXXXXXXXXXXXAQLRV-FNLGNTSPVPVSDLVSILERLLKVKAKR-NI 385
+G L + R N+G+ V ++++ E +L + K+ I
Sbjct: 255 EGVL---------------RLTKSDFREPVNIGSDEMVSMNEMA---EMVLSFEEKKLPI 296
Query: 386 MKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRW 426
+P V +++ +L + +LG+ P L+ GL+ W
Sbjct: 297 HHIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFW 337
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 144/341 (42%), Gaps = 47/341 (13%)
Query: 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGD 159
+ + +TGA GF+ +H++ LK G V+ D K + + E +F E
Sbjct: 30 LKISITGAGGFIASHIARRLKHEGHYVIASD----------WKKNEHMTE--DMFCDEFH 77
Query: 160 INDMALLKKLFDVVS-FTHVMHLAAQ-AGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANP 217
+ D+ +++ V HV +LAA G+ + N + +++N +++E + N
Sbjct: 78 LVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAAR-ING 136
Query: 218 QPAIVWASSSSVYGL-----NTKVPFSEKDR-TDQPASLYAATKKAGEEIAHTYNHIYGL 271
+ASS+ +Y T V E D +P + K A EE+ YN +G+
Sbjct: 137 IKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGI 196
Query: 272 SLTGLRFFTVYGPWGR----PDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIV 327
RF +YGP+G + A F R + S FE G R FT+ID+ V
Sbjct: 197 ECRIGRFHNIYGPFGTWKGGREKAPAAFCRKA--QTSTDRFEMWGDGLQTRSFTFIDECV 254
Query: 328 KGCLAALDTAEXXXXXXXXXXXXAQLRV-FNLGNTSPVPVSDLVSILERLLKVKAKR-NI 385
+G L + R N+G+ V ++++ E +L + K+ I
Sbjct: 255 EGVL---------------RLTKSDFREPVNIGSDEMVSMNEMA---EMVLSFEEKKLPI 296
Query: 386 MKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRW 426
+P V +++ +L + +LG+ P L+ GL+ W
Sbjct: 297 HHIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFW 337
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 100/240 (41%), Gaps = 33/240 (13%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
V +TG G +G+H++ L RGD V+G+DNF R+ L + + VEG I
Sbjct: 24 VFITGICGQIGSHIAELLLERGDKVVGIDNF-------ATGRREHLKDHPNLTFVEGSIA 76
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNA--NPQP 219
D AL+ +L + V+H AA + ++P+ + + + V V + A N
Sbjct: 77 DHALVNQLIGDLQPDAVVHTAA------SYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVG 130
Query: 220 AIVWASSSSVYGLNTKVPFSEKDRTDQPA----SLYAATKKAGEEIAHTYNHIYGLSLTG 275
V+ ++ YG+ P + R D P S YA +K A E+ Y GL
Sbjct: 131 RFVYFQTALCYGVK---PIQQPVRLDHPRNPANSSYAISKSANED----YLEYSGLDFVT 183
Query: 276 LRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALD 335
R V GP FF R +K RDF ++ D+ + + A+D
Sbjct: 184 FRLANVVGPRNVSGPLPIFFQRLSEGKKCFVT-------KARRDFVFVKDLARATVRAVD 236
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 80/341 (23%), Positives = 138/341 (40%), Gaps = 42/341 (12%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+L+TG AGFVG+H++ L G V +DNF K+ + + ++ D+
Sbjct: 30 ILITGGAGFVGSHLTDKLXXDGHEVTVVDNFFT----GRKRNVEHWIGHENFELINHDV- 84
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
++ L+ + + HLA+ A NP + +N G ++ L + K + +
Sbjct: 85 ----VEPLY--IEVDQIYHLASPASPPNYXYNPIKTLKTNTIGTLNXLGLAKRVGAR--L 136
Query: 222 VWASSSSVYGLNTKVPFSE----KDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLR 277
+ AS+S VYG P SE P + Y K+ E + Y G+ + R
Sbjct: 137 LLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETXCYAYXKQEGVEVRVAR 196
Query: 278 FFTVYGPWGRPDMAYFF--FTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALD 335
F +GP + F L + + ++ S G+ R F Y+ D+V G +A +
Sbjct: 197 IFNTFGPRXHXNDGRVVSNFILQALQGEPLTVYGS---GSQTRAFQYVSDLVNGLVALXN 253
Query: 336 TAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVP 395
+ NLGN + + +++ L V + I L D P
Sbjct: 254 SNVSSP--------------VNLGNPEEHTILEFAQLIKNL--VGSGSEIQFLSEAQDDP 297
Query: 396 FTHA-NISLAQRELGYKPTTDLQTGLKKFVRWY---LSYYA 432
+I A+ LG++P L+ GL K + ++ L Y A
Sbjct: 298 QKRKPDIKKAKLXLGWEPVVPLEEGLNKAIHYFRKELEYQA 338
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 89/395 (22%), Positives = 152/395 (38%), Gaps = 76/395 (19%)
Query: 100 ISVLVTGAAGFVGTHVSAALKRRG-------DGVLGLDNFNDYYDPSLKKARQALLERSG 152
+ VLV G AG++G+H AL R D ++G +D+ + AR+ L + G
Sbjct: 3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARK-LQQSDG 61
Query: 153 ---------IFIVEGDINDMALLKKLFDVVS-FTHVMHLAAQAGVRYAMQNPNSYVHSNI 202
+ GD+ + L +F V+H+ A V ++++P Y +N+
Sbjct: 62 PKPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNV 121
Query: 203 AGLVSLLEVCKNANPQPAIVWASSSSVYG------LNTKVPFSEKDRTDQPASLYAATKK 256
G++ LL+ + I+++SS++++G ++T + + P S Y +K
Sbjct: 122 VGILRLLQAML-LHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKL 180
Query: 257 AGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFF---------------------- 294
E + YG+ LR+F G D+ +
Sbjct: 181 IAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQ 240
Query: 295 ---FTRDILNRKSIPIF----ESPDHGTVARDFTYIDDIVKGCLAALDTAEXXXXXXXXX 347
D K +PIF +PD GT RD+ ++ D+ + ALD E
Sbjct: 241 RLTIHEDASTDKRMPIFGTDYPTPD-GTCVRDYVHVCDLASAHILALDYVEKLGPNDKSK 299
Query: 348 XXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLP------RNGDVPFTHANI 401
VFNLG + V +++ +V K +P R GD + A
Sbjct: 300 Y----FSVFNLGTSRGYSVREVI-------EVARKTTGHPIPVRECGRREGDPAYLVAAS 348
Query: 402 SLAQRELGYKPTTDLQTGLK----KFVRWYLSYYA 432
A+ LG+KP D + KF R + + YA
Sbjct: 349 DKAREVLGWKPKYDTLEAIMETSWKFQRTHPNGYA 383
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 110/258 (42%), Gaps = 33/258 (12%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQAL--LERSGIF-IVEG 158
+L+TG GF+G+++++ +G ++ DN S K A L L G F V G
Sbjct: 4 LLITGGCGFLGSNLASFALSQGIDLIVFDNL------SRKGATDNLHWLSSLGNFEFVHG 57
Query: 159 DINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQ 218
DI + + +L HLA Q + ++ NP N+ G ++LLE + N
Sbjct: 58 DIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSN 117
Query: 219 PAIVWASSSSVYGLNTKVPFSEKDR----TDQPA-----------SLYAATKKAGEEIAH 263
I+++S++ VYG + ++E + D+P S Y +K A ++
Sbjct: 118 CNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYML 177
Query: 264 TYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPI-------FESPDHGTV 316
Y I+GL+ R ++YG GR Y +K++ I F +G
Sbjct: 178 DYARIFGLNTVVFRHSSMYG--GRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQ 235
Query: 317 ARDFTYIDDIVKGCLAAL 334
RD + +D++ AL
Sbjct: 236 VRDVLHAEDMISLYFTAL 253
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 75/335 (22%), Positives = 135/335 (40%), Gaps = 43/335 (12%)
Query: 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGD 159
+ +L+TG AG +G+++ +G +L +DNF R+ L +G+ ++EG
Sbjct: 21 MRILITGGAGCLGSNLIEHWLPQGHEILVIDNFA-------TGKREVLPPVAGLSVIEGS 73
Query: 160 INDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVH---SNIAGLVSLLEVCKNAN 216
+ D LL++ FD THV+H AA A ++P+ + +N+ G +++ + A
Sbjct: 74 VTDAGLLERAFDSFKPTHVVHSAA------AYKDPDDWAEDAATNVQGSINVAKAASKAG 127
Query: 217 PQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGL 276
+ + + ++ YG VP D P + Y +K AGE + + + + L
Sbjct: 128 VKRLLNF-QTALCYGRPATVPIP-IDSPTAPFTSYGISKTAGE----AFLMMSDVPVVSL 181
Query: 277 RFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDT 336
R V GP F+ R +K RDF + D + +A L
Sbjct: 182 RLANVTGPRLAIGPIPTFYKRLKAGQKCF-------CSDTVRDFLDMSDFL--AIADLSL 232
Query: 337 AEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVS-ILERLLKVKAKRNIMKLPRNGDVP 395
E VFN+ + ++ +L+ + A+ + P DVP
Sbjct: 233 QEGRPTG-----------VFNVSTGEGHSIKEVFDVVLDYVGATLAEPVPVVAPGADDVP 281
Query: 396 FTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSY 430
+ S + E G+K D + + + WY Y
Sbjct: 282 SVVLDPSKTETEFGWKAKVDFKDTITGQLAWYDKY 316
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 79/348 (22%), Positives = 139/348 (39%), Gaps = 50/348 (14%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGD 159
+V+V G AGFVG+++ L G + V +DN L + + + + E
Sbjct: 34 NVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNL-------LSAEKINVPDHPAVRFSETS 86
Query: 160 INDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQP 219
I D ALL L D + +V HLA G + ++ +P + +N + L E K+
Sbjct: 87 ITDDALLASLQD--EYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLK 144
Query: 220 AIVWASSSSVYGLNTKVPFSEKDRTD-----QPASLYAATKKAGEEIAHTYNHIYGLSLT 274
+V++++ T + TD S Y+ +K GE + Y+ + L
Sbjct: 145 KVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQLPTV 204
Query: 275 GLRFFTVYGP--------W-GRPDMAYFFFTRDILNR--KSIPIFESPDHGTVARDFTYI 323
RF VYGP W G P + T + + K +P+ + G RDF ++
Sbjct: 205 RARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPL-PLENGGVATRDFIFV 263
Query: 324 DDIVKGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKR 383
+D+ G +A V+N+ + ++DL + + +
Sbjct: 264 EDVANGLIACAADGTPGG-------------VYNIASGKETSIADLATKINEITG----- 305
Query: 384 NIMKLPRNGDVPFTHANISL-----AQRELGYKPTTDLQTGLKKFVRW 426
N +L R P+ ++ A+RELG+ + GL+K + W
Sbjct: 306 NNTELDRLPKRPWDNSGKRFGSPEKARRELGFSADVSIDDGLRKTIEW 353
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 101/241 (41%), Gaps = 36/241 (14%)
Query: 100 ISVLVTGAAGFVGTHVSAALKRRGDG------VLGLDNFNDYYDPSLKKARQALLERSGI 153
+ + VTG GF+G +V ++K G+ +G NDY R
Sbjct: 3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAINDYE------------YRVSD 50
Query: 154 FIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCK 213
+ +E L+ +L DV + V+HLAA G Q S H N +L + C
Sbjct: 51 YTLED------LINQLNDVDA---VVHLAATRG----SQGKISEFHDNEILTQNLYDACY 97
Query: 214 NANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSL 273
N IV+AS+ S Y T +P++EK+ P Y +K A E I + Y+ GL +
Sbjct: 98 ENNISN-IVYASTISAYSDETSLPWNEKELP-LPDLXYGVSKLACEHIGNIYSRKKGLCI 155
Query: 274 TGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAA 333
LRF +YG + + F R + + + + + R+F Y D K + A
Sbjct: 156 KNLRFAHLYGFNEKNNYXINRFFRQAFHGEQLTLHANS---VAKREFLYAKDAAKSVIYA 212
Query: 334 L 334
L
Sbjct: 213 L 213
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 84/341 (24%), Positives = 143/341 (41%), Gaps = 38/341 (11%)
Query: 101 SVLVTGAAGFVGTH-VSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEG 158
+++VTG AGF+G++ V D V LD Y + L +R + +V G
Sbjct: 6 NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLT--YAGNKANLEAILGDR--VELVVG 61
Query: 159 DINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQ 218
DI D L+ KL ++H AA++ ++ +P+ ++H+N G +LLE + + +
Sbjct: 62 DIADAELVDKL--AAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIR 119
Query: 219 PAIVWASSSSVYG---LNTKVPF-----SEK---DRTDQPASLYAATKKAGEEIAHTYNH 267
V S+ VYG L +P EK + P+S Y++TK A + I +
Sbjct: 120 FHHV--STDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVR 177
Query: 268 IYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIV 327
+G+ T YGP+ + F R I N + + G RD+ + +D
Sbjct: 178 SFGVKATISNCSNNYGPYQHIEK---FIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHS 234
Query: 328 KGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMK 387
G A L G + V +L ILE++ + K + +
Sbjct: 235 TGVWAILTKGRMGETYLIGAD----------GEKNNKEVLEL--ILEKMGQPKDAYDHVT 282
Query: 388 LPRNGDVPFTHANISLAQRELGYKPT-TDLQTGLKKFVRWY 427
D+ + + S + ELG+ P TD GL++ ++WY
Sbjct: 283 DRAGHDLRYA-IDASKLRDELGWTPQFTDFSEGLEETIQWY 322
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 78/341 (22%), Positives = 131/341 (38%), Gaps = 53/341 (15%)
Query: 102 VLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
++VTG AGF+G+++ AL +G +L +DN D K L + E +
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKD----GTKFVNLVDLNIADYMDKEDFL 57
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGV-----RYAMQNPNSYVHSNIAGLVSLLEVCKNA 215
+ ++ DV + + H A + +Y M N Y LL C
Sbjct: 58 IQIMAGEEFGDVEA---IFHEGAXSSTTEWDGKYMMDNNYQYSK-------ELLHYC--L 105
Query: 216 NPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTG 275
+ ++ASS++ YG T F E ++P ++Y +K +E + G
Sbjct: 106 EREIPFLYASSAATYGGRTS-DFIESREYEKPLNVYGYSKFLFDEYVRQILPEANSQIVG 164
Query: 276 LRFFTVYGPW----GRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCL 331
R+F VYGP G F + N +S +FE ++ RDF Y+ D+ L
Sbjct: 165 FRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSEN--FKRDFVYVGDVADVNL 222
Query: 332 AALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLP-- 389
L+ +FNLG ++ + L K I +P
Sbjct: 223 WFLENGVSG--------------IFNLGTGRA---ESFQAVADATLAYHKKGQIEYIPFP 265
Query: 390 ---RNGDVPFTHANISLAQRELGY-KPTTDLQTGLKKFVRW 426
+ FT A+++ R GY KP + G+ +++ W
Sbjct: 266 DKLKGRYQAFTQADLT-NLRAAGYDKPFKTVAEGVTEYMAW 305
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 140/355 (39%), Gaps = 44/355 (12%)
Query: 99 GISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSL-KKARQALLERSGIFIVE 157
G V VTG GF G +S L+ G V G + PSL + AR A +S I
Sbjct: 9 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGY-SLTAPTVPSLFETARVADGMQSEI---- 63
Query: 158 GDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANP 217
GDI D L + V H+AAQ VR + P +N+ G V LLE ++
Sbjct: 64 GDIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGG 123
Query: 218 QPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY-------- 269
A+V +S Y + ++ Y+ +K E + +Y + +
Sbjct: 124 VKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQ 183
Query: 270 -GLSLTGLRFFTVYGPWGRPDMAYFFFTRDILN--RKSIPIFESPDHGTVARDFTYIDDI 326
G ++ +R V G D A DIL +S P+ H R + ++ +
Sbjct: 184 HGTAVATVRAGNVIGG---GDWALDRIVPDILRAFEQSQPVIIRNPHAI--RPWQHVLEP 238
Query: 327 VKGCLAA-----LDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKA 381
+ G L D AE A+ F + PV ++V E+++K
Sbjct: 239 LSGYLLLAQKLYTDGAE-----------YAEGWNFGPNDADATPVKNIV---EQMVKYWG 284
Query: 382 KRNIMKLPRNG---DVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYAG 433
+ +L N + + + S A+ +LG+ P +L T L+ V W+ ++ +G
Sbjct: 285 EGASWQLDGNAHPHEAHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNWLSG 339
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 76/338 (22%), Positives = 129/338 (38%), Gaps = 47/338 (13%)
Query: 102 VLVTGAAGFVGTHVSAALKRRG-DGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
++VTG AGF+G+++ AL +G +L +DN D K L + E +
Sbjct: 49 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKD----GTKFVNLVDLNIADYMDKEDFL 104
Query: 161 NDMALLKKLFDVVSFTH--VMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQ 218
+ ++ DV + H + +Y M N Y LL C +
Sbjct: 105 IQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSK-------ELLHYC--LERE 155
Query: 219 PAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRF 278
++ASS++ YG T F E ++P +++ +K +E + G R+
Sbjct: 156 IPFLYASSAATYGGRTS-DFIESREYEKPLNVFGYSKFLFDEYVRQILPEANSQIVGFRY 214
Query: 279 FTVYGPW----GRPDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAAL 334
F VYGP G F + N +S +FE ++ RDF Y+ D+ L L
Sbjct: 215 FNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSEN--FKRDFVYVGDVADVNLWFL 272
Query: 335 DTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLP----- 389
+ +FNLG ++ + L K I +P
Sbjct: 273 ENGVSG--------------IFNLGTGR---AESFQAVADATLAYHKKGQIEYIPFPDKL 315
Query: 390 RNGDVPFTHANISLAQRELGY-KPTTDLQTGLKKFVRW 426
+ FT A+++ R GY KP + G+ +++ W
Sbjct: 316 KGRYQAFTQADLT-NLRAAGYDKPFKTVAEGVTEYMAW 352
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 21/182 (11%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+LVTGAAG VG+ + L V +D D +A + IV D+
Sbjct: 5 LLVTGAAGGVGSAIRPHLGTLAHEV----RLSDIVDLGAAEAHEE--------IVACDLA 52
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNP-NSYVHSNIAGLVSLLEVCKNANPQPA 220
D + L V ++HL +++ P N + +NI G +L E +N +P
Sbjct: 53 DAQAVHDL--VKDCDGIIHLGG-----VSVERPWNDILQANIIGAYNLYEAARNLG-KPR 104
Query: 221 IVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFT 280
IV+ASS+ G + + + +P SLY +K GE++A Y H + + +R +
Sbjct: 105 IVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGLSKCFGEDLASLYYHKFDIETLNIRIGS 164
Query: 281 VY 282
+
Sbjct: 165 CF 166
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 7/183 (3%)
Query: 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN-DYYDPSLKKARQALLERSGIFIV 156
+G L+TG G G +++ L +G V G D + ++ LK+ L + + I+
Sbjct: 2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKE----LGIENDVKII 57
Query: 157 EGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN 216
D+ + + + + + V V +LAAQ+ V + + P + G++ +LE +
Sbjct: 58 HMDLLEFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVK 117
Query: 217 PQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGL-SLTG 275
P AS+S ++G ++P +EK P S YA K G I Y Y + + +G
Sbjct: 118 PDTKFYQASTSEMFGKVQEIPQTEKTPF-YPRSPYAVAKLFGHWITVNYREAYNMFACSG 176
Query: 276 LRF 278
+ F
Sbjct: 177 ILF 179
>pdb|2YY7|A Chain A, Crystal Structure Of Thermolabile L-Threonine
Dehydrogenase From Flavobacterium Frigidimaris Kuc-1
pdb|2YY7|B Chain B, Crystal Structure Of Thermolabile L-Threonine
Dehydrogenase From Flavobacterium Frigidimaris Kuc-1
Length = 312
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 103/236 (43%), Gaps = 22/236 (9%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+L+ GA G +GT ++ L++ + G +N ++K ++ SG F V +
Sbjct: 5 ILIIGACGQIGTELTQKLRK----LYGTENV---IASDIRKLNTDVV-NSGPFEVVNAL- 55
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
D ++ L +V T + +AA A +NP N+ L +L + K +
Sbjct: 56 DFNQIEHLVEVHKITDIYLMAALLSAT-AEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIF 114
Query: 222 VWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 281
W SS +V+G T + + +P+++Y +K+AGE Y++IYG+ + +R+ +
Sbjct: 115 -WPSSIAVFGPTTPKENTPQYTIMEPSTVYGISKQAGERWCEYYHNIYGVDVRSIRYPGL 173
Query: 282 YGPWGRP------DMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCL 331
W P D A F + I ++K +E Y+DD + +
Sbjct: 174 IS-WSTPPGGGTTDYAVDIFYKAIADKK----YECFLSSETKMPMMYMDDAIDATI 224
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 78/192 (40%), Gaps = 18/192 (9%)
Query: 100 ISVLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEG 158
+ VL+ G GF+G H++ L R V GLD +D A L VEG
Sbjct: 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD--------AISRFLNHPHFHFVEG 52
Query: 159 DINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQ 218
DI+ + + + V V+ L A A +NP + + ++ C +
Sbjct: 53 DISIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC--VKYR 109
Query: 219 PAIVWASSSSVYGLNTKVPFSEKDR------TDQPASLYAATKKAGEEIAHTYNHIYGLS 272
I++ S+S VYG+ + F E ++P +Y+ +K+ + + Y GL
Sbjct: 110 KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQ 169
Query: 273 LTGLRFFTVYGP 284
T R F GP
Sbjct: 170 FTLFRPFNWMGP 181
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 77/190 (40%), Gaps = 18/190 (9%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
VL+ G GF+G H++ L R V GLD +D A L VEGDI
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD--------AISRFLNHPHFHFVEGDI 67
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
+ + + + V V+ L A A +NP + + ++ C +
Sbjct: 68 SIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC--VKYRKR 124
Query: 221 IVWASSSSVYGLNTKVPFSEKDR------TDQPASLYAATKKAGEEIAHTYNHIYGLSLT 274
I++ S+S VYG+ + F E ++P +Y+ +K+ + + Y GL T
Sbjct: 125 IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 184
Query: 275 GLRFFTVYGP 284
R F GP
Sbjct: 185 LFRPFNWMGP 194
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 77/190 (40%), Gaps = 18/190 (9%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
VL+ G GF+G H++ L R V GLD +D A L VEGDI
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD--------AISRFLNHPHFHFVEGDI 67
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
+ + + + V V+ L A A +NP + + ++ C +
Sbjct: 68 SIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC--VKYRKR 124
Query: 221 IVWASSSSVYGLNTKVPFSEKDR------TDQPASLYAATKKAGEEIAHTYNHIYGLSLT 274
I++ S+S VYG+ + F E ++P +Y+ +K+ + + Y GL T
Sbjct: 125 IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 184
Query: 275 GLRFFTVYGP 284
R F GP
Sbjct: 185 LFRPFNWMGP 194
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 77/190 (40%), Gaps = 18/190 (9%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
VL+ G GF+G H++ L R V GLD +D A L VEGDI
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD--------AISRFLNHPHFHFVEGDI 67
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
+ + + + V V+ L A A +NP + + ++ C +
Sbjct: 68 SIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC--VKYRKR 124
Query: 221 IVWASSSSVYGLNTKVPFSEKDR------TDQPASLYAATKKAGEEIAHTYNHIYGLSLT 274
I++ S+S VYG+ + F E ++P +Y+ +K+ + + Y GL T
Sbjct: 125 IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 184
Query: 275 GLRFFTVYGP 284
R F GP
Sbjct: 185 LFRPFNWMGP 194
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 77/190 (40%), Gaps = 18/190 (9%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
VL+ G GF+G H++ L R V GLD +D A L VEGDI
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD--------AISRFLNHPHFHFVEGDI 67
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
+ + + + V V+ L A A +NP + + ++ C +
Sbjct: 68 SIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC--VKYRKR 124
Query: 221 IVWASSSSVYGLNTKVPFSEKDR------TDQPASLYAATKKAGEEIAHTYNHIYGLSLT 274
I++ S+S VYG+ + F E ++P +Y+ +K+ + + Y GL T
Sbjct: 125 IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 184
Query: 275 GLRFFTVYGP 284
R F GP
Sbjct: 185 LFRPFNWMGP 194
>pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose
EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In
The Biosynthesis Of Gdp-L- Fucose
Length = 321
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 69/345 (20%), Positives = 127/345 (36%), Gaps = 53/345 (15%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
V + G G VG+ + L++RGD L L + R L ++
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVELVL------------RTRDEL-----------NLL 42
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQN-PNSYVHSNIAGLVSLLEVCKNANPQPA 220
D + F V AA+ G A P +++ N+ +++ + N
Sbjct: 43 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAA-HQNDVNK 101
Query: 221 IVWASSSSVYGLNTKVPFSEKDR-------TDQPASLYAATKKAGEEIAHTYNHIYGLSL 273
+++ SS +Y K P +E + T++P YA K AG ++ +YN YG
Sbjct: 102 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEP---YAIAKIAGIKLCESYNRQYGRDY 158
Query: 274 TGLRFFTVYGPWGR---------PDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYID 324
+ +YGP P + F N + ++ S GT R+F ++D
Sbjct: 159 RSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGS---GTPMREFLHVD 215
Query: 325 DIVKGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRN 384
D+ + ++ A L N+G + DL + +++ K R
Sbjct: 216 DMAAASIHVMELAH----EVWLENTQPMLSHINVGTGVDCTIRDLAQTIAKVVGYKG-RV 270
Query: 385 IMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLS 429
+ + P +++ +LG+ L+ GL +W+L
Sbjct: 271 VFDASKPDGTPRKLLDVTRLH-QLGWYHEISLEAGLASTYQWFLE 314
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 131/337 (38%), Gaps = 64/337 (18%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+LVTG+AG VG V AAL+ +G V G D PS + V G +
Sbjct: 22 ILVTGSAGRVGRAVVAALRTQGRTVRGFD-----LRPSGTGGEE----------VVGSLE 66
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
D L ++ + V+HL A + +A + + N+ G LL+ A +
Sbjct: 67 DGQALSDA--IMGVSAVLHLGAF--MSWAPADRDRMFAVNVEGTRRLLDAASAAGVR-RF 121
Query: 222 VWASSSSVYGLNTK--VPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFF 279
V+ASS VY N +P +E D P S Y TK GEE+ + + LRF
Sbjct: 122 VFASSGEVYPENRPEFLPVTE-DHPLCPNSPYGLTKLLGEELVRFHQRSGAMETVILRFS 180
Query: 280 TVYGPWGRPDMAYF-----FFTRDILNRKS-------IPIFESPDHGT----VARD---- 319
D F FF R ++++ + +S D G +AR+
Sbjct: 181 HTQDATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQSRDIGEPSHILARNENGR 240
Query: 320 -----FTYIDDIVKGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILE 374
T D+V G L ALD E A FNLG P +D ++L
Sbjct: 241 PFRMHITDTRDMVAGILLALDHPE------------AAGGTFNLGADEP---ADFAALLP 285
Query: 375 RLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYK 411
++ + I+ + GD + H + + LG++
Sbjct: 286 KIAALTGL-PIVTVDFPGDGVYYHTSNERIRNTLGFE 321
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 24/191 (12%)
Query: 103 LVTGAAGFVGTHVSAALKRRGDGVLGL----DNFND------YYDPSLKKARQALLERSG 152
L+TG G G++++ L +G V GL NFN Y DP +AL++
Sbjct: 32 LITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDP--HNVNKALMK--- 86
Query: 153 IFIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVC 212
+ D+ D + L++ DV+ V +LAAQ+ V + + P+ G + LLE
Sbjct: 87 --LHYADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAV 144
Query: 213 K----NANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHI 268
+ ++ A SS ++G +T P SE P S YAA+K A Y
Sbjct: 145 RSHTIDSGRTVKYYQAGSSEMFG-STPPPQSETTPF-HPRSPYAASKCAAHWYTVNYREA 202
Query: 269 YGL-SLTGLRF 278
YGL + G+ F
Sbjct: 203 YGLFACNGILF 213
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 77/190 (40%), Gaps = 18/190 (9%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
VL+ G GF+G H++ L R V GLD +D A L VEGDI
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD--------AISRFLNHPHFHFVEGDI 67
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
+ + + + V V+ L A A +NP + + ++ C +
Sbjct: 68 SIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC--VKYRKR 124
Query: 221 IVWASSSSVYGLNTKVPFSEKDR------TDQPASLYAATKKAGEEIAHTYNHIYGLSLT 274
I++ S++ VYG+ + F E ++P +Y+ +K+ + + Y GL T
Sbjct: 125 IIFPSTAEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 184
Query: 275 GLRFFTVYGP 284
R F GP
Sbjct: 185 LFRPFNWMGP 194
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 56/134 (41%), Gaps = 6/134 (4%)
Query: 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSL-KKARQALLERSGIFIV 156
G V VTG GF G+ +S L G V G + PSL + R L S I
Sbjct: 8 QGKRVFVTGHTGFKGSWLSLWLTEMGAIVKGY-ALDAPTVPSLFEIVRLNDLMESHI--- 63
Query: 157 EGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNAN 216
GDI D L+ V H+AAQ VR + + P +N+ G V LLE K
Sbjct: 64 -GDIRDFEKLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIKTYSTNVMGTVHLLETVKQVG 122
Query: 217 PQPAIVWASSSSVY 230
A+V +S Y
Sbjct: 123 NIKAVVNITSDKCY 136
>pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadph
pdb|1FXS|A Chain A, Gdp-fucose Synthetase From Escherichia Coli Complex With
Nadp
pdb|1GFS|A Chain A, Gdp-Fucose Synthetase From E. Coli
Length = 321
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 68/345 (19%), Positives = 127/345 (36%), Gaps = 53/345 (15%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
V + G G VG+ + L++RGD L L + R L ++
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVELVL------------RTRDEL-----------NLL 42
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQN-PNSYVHSNIAGLVSLLEVCKNANPQPA 220
D + F V AA+ G A P +++ N+ +++ + N
Sbjct: 43 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAA-HQNDVNK 101
Query: 221 IVWASSSSVYGLNTKVPFSEKDR-------TDQPASLYAATKKAGEEIAHTYNHIYGLSL 273
+++ SS +Y K P +E + T++P YA K AG ++ +YN YG
Sbjct: 102 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEP---YAIAKIAGIKLCESYNRQYGRDY 158
Query: 274 TGLRFFTVYGPWGR---------PDMAYFFFTRDILNRKSIPIFESPDHGTVARDFTYID 324
+ +YGP P + F N + ++ S GT R+F ++D
Sbjct: 159 RSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGS---GTPMREFLHVD 215
Query: 325 DIVKGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRN 384
D+ + ++ A L N+G + +L + +++ K R
Sbjct: 216 DMAAASIHVMELAH----EVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKG-RV 270
Query: 385 IMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLS 429
+ + P +++ +LG+ L+ GL +W+L
Sbjct: 271 VFDASKPDGTPRKLLDVTRLH-QLGWYHEISLEAGLASTYQWFLE 314
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 77/190 (40%), Gaps = 18/190 (9%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
VL+ G GF+G H++ L R V GLD +D A L VEGDI
Sbjct: 318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD--------AISRFLNHPHFHFVEGDI 369
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
+ + + + V V+ L A A +NP + + ++ C +
Sbjct: 370 SIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKR-- 426
Query: 221 IVWASSSSVYGLNTKVPFSEKDR------TDQPASLYAATKKAGEEIAHTYNHIYGLSLT 274
I++ S+S VYG+ + F E ++P +Y+ +K+ + + Y GL T
Sbjct: 427 IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 486
Query: 275 GLRFFTVYGP 284
R F GP
Sbjct: 487 LFRPFNWMGP 496
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 87/215 (40%), Gaps = 36/215 (16%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALL---ERSGIFIVE 157
++L+TG G G R+ Y LK++ A+ R FI
Sbjct: 23 TILITGGTGSFG----KCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFI-- 76
Query: 158 GDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVC-KNAN 216
GD+ D+ L + V +H AA V A NP + +NI G +++ C KNA
Sbjct: 77 GDVRDLERLNYALEGVDI--CIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNA- 133
Query: 217 PQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTG- 275
S V L+T D+ P +LY ATK +++ + N+ G S T
Sbjct: 134 ---------ISQVIALST-------DKAANPINLYGATKLCSDKLFVSANNFKGSSQTQF 177
Query: 276 --LRFFTVYGPWGRPDMAYFFFTRDILNRKS-IPI 307
+R+ V G G FF + + N+ S IPI
Sbjct: 178 SVVRYGNVVGSRGS---VVPFFKKLVQNKASEIPI 209
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/342 (19%), Positives = 127/342 (37%), Gaps = 47/342 (13%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
V + G G VG+ + L++RGD L L + R L ++
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVELVL------------RTRDEL-----------NLL 42
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQN-PNSYVHSNIAGLVSLLEVCKNANPQPA 220
D + F V AA+ G A P +++ N+ +++ + N
Sbjct: 43 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAA-HQNDVNK 101
Query: 221 IVWASSSSVYGLNTKVPFSEKDR-------TDQPASLYAATKKAGEEIAHTYNHIYGLSL 273
+++ SS +Y K P +E + T++P YA K AG ++ +YN YG
Sbjct: 102 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEP---YAIAKIAGIKLCESYNRQYGRDY 158
Query: 274 TGLRFFTVYGPWGRPDMAYFFFTRDILNR-KSIPIFESPD-----HGTVARDFTYIDDIV 327
+ +YGP + +L R ++PD GT R+F ++DD+
Sbjct: 159 RSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMA 218
Query: 328 KGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMK 387
+ ++ A L N+G + +L + +++ K R +
Sbjct: 219 AASIHVMELAH----EVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKG-RVVFD 273
Query: 388 LPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLS 429
+ P +++ +LG+ L+ GL +W+L
Sbjct: 274 ASKPDGTPRKLLDVTRLH-QLGWYHEISLEAGLASTYQWFLE 314
>pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r
Length = 321
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 67/342 (19%), Positives = 126/342 (36%), Gaps = 47/342 (13%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
V + G G VG+ + L++RGD L L + R L ++
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVELVL------------RTRDEL-----------NLL 42
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQN-PNSYVHSNIAGLVSLLEVCKNANPQPA 220
D + F V AA+ G A P +++ N+ +++ + N
Sbjct: 43 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAA-HQNDVNK 101
Query: 221 IVWASSSSVYGLNTKVPFSEKDR-------TDQPASLYAATKKAGEEIAHTYNHIYGLSL 273
+++ SS +Y K P +E + T++P YA + AG ++ +YN YG
Sbjct: 102 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEP---YAIARIAGIKLCESYNRQYGRDY 158
Query: 274 TGLRFFTVYGPWGRPDMAYFFFTRDILNR------KSIPIFESPDHGTVARDFTYIDDIV 327
+ +YGP + +L R +S P GT R+F ++DD+
Sbjct: 159 RSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMA 218
Query: 328 KGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMK 387
+ ++ A L N+G + +L + +++ K R +
Sbjct: 219 AASIHVMELAH----EVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKG-RVVFD 273
Query: 388 LPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLS 429
+ P +++ +LG+ L+ GL +W+L
Sbjct: 274 ASKPDGTPRKLLDVTRLH-QLGWYHEISLEAGLASTYQWFLE 314
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 67/342 (19%), Positives = 126/342 (36%), Gaps = 47/342 (13%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
V + G G VG+ + L++RGD L L + R L ++
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVELVL------------RTRDEL-----------NLL 42
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQN-PNSYVHSNIAGLVSLLEVCKNANPQPA 220
D + F V AA+ G A P +++ N+ +++ + N
Sbjct: 43 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAA-HQNDVNK 101
Query: 221 IVWASSSSVYGLNTKVPFSEKDR-------TDQPASLYAATKKAGEEIAHTYNHIYGLSL 273
+++ +S +Y K P +E + T++P YA K AG ++ +YN YG
Sbjct: 102 LLFLGASCIYPKLAKQPMAESELLQGTLEPTNEP---YAIAKIAGIKLCESYNRQYGRDY 158
Query: 274 TGLRFFTVYGPWGRPDMAYFFFTRDILNR------KSIPIFESPDHGTVARDFTYIDDIV 327
+ +YGP + +L R +S P GT R+F ++DD+
Sbjct: 159 RSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMA 218
Query: 328 KGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMK 387
+ ++ A L N+G + +L + +++ K R +
Sbjct: 219 AASIHVMELAH----EVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKG-RVVFD 273
Query: 388 LPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLS 429
+ P +++ +LG+ L+ GL +W+L
Sbjct: 274 ASKPDGTPRKLLDVTRLH-QLGWYHEISLEAGLASTYQWFLE 314
>pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
pdb|4B8W|B Chain B, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
Length = 319
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 76/194 (39%), Gaps = 34/194 (17%)
Query: 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGD 159
+ +LVTG +G VG + + G G+ G D+ S K A D
Sbjct: 7 MRILVTGGSGLVGKAIQKVVAD-GAGLPG----EDWVFVSSKDA---------------D 46
Query: 160 INDMALLKKLFDVVSFTHVMHLAAQAG-----VRYAMQNPNSYVHSNIAGLVSLLEVCKN 214
+ D A + LF+ V THV+HLAA G ++Y + VH N L S EV
Sbjct: 47 LTDTAQTRALFEKVQPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGAR 106
Query: 215 ANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASL----YAATKKAGEEIAHTYNHIYG 270
+V S+ ++ T P E + P Y+ K+ + Y YG
Sbjct: 107 -----KVVSCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQYG 161
Query: 271 LSLTGLRFFTVYGP 284
+ T + V+GP
Sbjct: 162 CTFTAVIPTNVFGP 175
>pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|B Chain B, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|C Chain C, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|D Chain D, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
Length = 320
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 76/194 (39%), Gaps = 34/194 (17%)
Query: 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGD 159
+ +LVTG +G VG + + G G+ G D+ S K A D
Sbjct: 8 MRILVTGGSGLVGKAIQKVVAD-GAGLPG----EDWVFVSSKDA---------------D 47
Query: 160 INDMALLKKLFDVVSFTHVMHLAAQAG-----VRYAMQNPNSYVHSNIAGLVSLLEVCKN 214
+ D A + LF+ V THV+HLAA G ++Y + VH N L S EV
Sbjct: 48 LTDTAQTRALFEKVQPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGAR 107
Query: 215 ANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASL----YAATKKAGEEIAHTYNHIYG 270
+V S+ ++ T P E + P Y+ K+ + Y YG
Sbjct: 108 -----KVVSCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQYG 162
Query: 271 LSLTGLRFFTVYGP 284
+ T + V+GP
Sbjct: 163 CTFTAVIPTNVFGP 176
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 76/180 (42%), Gaps = 20/180 (11%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+LVTG++G +GT + L + Y ++ + + GI + D++
Sbjct: 2 ILVTGSSGQIGTELVPYLAEK------------YGKKNVIASDIVQRDTGGIKFITLDVS 49
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
+ + + + S + HLA + ++P N+ G ++LE K + +
Sbjct: 50 NRDEIDRAVEKYSIDAIFHLAGILSAK-GEKDPALAYKVNMNGTYNILEAAKQHRVEKVV 108
Query: 222 VWASSSSVYGLNT---KVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRF 278
+ S+ V+G T KVP R P ++Y TK A E + Y +GL + LR+
Sbjct: 109 I-PSTIGVFGPETPKNKVPSITITR---PRTMYGVTKIAAELLGQYYYEKFGLDVRSLRY 164
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 14/176 (7%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
S LVTG G G +++ L +G V GL + + R+ +E I +GD+
Sbjct: 16 SALVTGITGQDGAYLAKLLLEKGYRVHGL--VARRSSDTRWRLRELGIE-GDIQYEDGDM 72
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
D +++ V +LAAQ+ V + P + + G+ LLE + +P+
Sbjct: 73 ADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETR 132
Query: 221 IVWASSSSVYGLNTKVPFSEKDRTDQ-----PASLYAATKKAGEEIAHTYNHIYGL 271
AS+S ++GL + +R D+ P S Y K G I Y +GL
Sbjct: 133 FYQASTSEMFGL------IQAERQDENTPFYPRSPYGVAKLYGHWITVNYRESFGL 182
>pdb|2ZKL|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
Length = 369
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 93/238 (39%), Gaps = 55/238 (23%)
Query: 100 ISVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGD 159
+++++TGA GFVG ++ A L D + + RQ E
Sbjct: 1 MNIVITGAKGFVGKNLKADLTSTTDHHI------------FEVHRQTKEEEL-------- 40
Query: 160 INDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQP 219
+ ALLK F ++HLA GV ++ + N++ L +L++ +P
Sbjct: 41 --ESALLKADF-------IVHLA---GVNRP-EHDKEFSLGNVSYLDHVLDILTRNTKKP 87
Query: 220 AIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFF 279
AI+ +SS D P Y +K GE++ Y YG ++ R+
Sbjct: 88 AILLSSSIQA-------------TQDNP---YGESKLQGEQLLREYAEEYGNTVYIYRWP 131
Query: 280 TVYGPWGRPDMAYFF--FTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALD 335
++G W +P+ F I + I + + V Y+DDIV A++
Sbjct: 132 NLFGKWCKPNYNSVIATFCYKIARNEEIQV----NDRNVELTLNYVDDIVAEIKRAIE 185
>pdb|3ST7|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
pdb|3VHR|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus In Space Group
C2221
Length = 369
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 92/237 (38%), Gaps = 55/237 (23%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
++++TGA GFVG ++ A L D + + RQ E
Sbjct: 2 NIVITGAKGFVGKNLKADLTSTTDHHI------------FEVHRQTKEEEL--------- 40
Query: 161 NDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPA 220
+ ALLK F ++HLA GV ++ + N++ L +L++ +PA
Sbjct: 41 -ESALLKADF-------IVHLA---GVNRP-EHDKEFSLGNVSYLDHVLDILTRNTKKPA 88
Query: 221 IVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFT 280
I+ +SS D P Y +K GE++ Y YG ++ R+
Sbjct: 89 ILLSSSIQA-------------TQDNP---YGESKLQGEQLLREYAEEYGNTVYIYRWPN 132
Query: 281 VYGPWGRPDMAYFF--FTRDILNRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALD 335
++G W +P+ F I + I + + V Y+DDIV A++
Sbjct: 133 LFGKWCKPNYNSVIATFCYKIARNEEIQV----NDRNVELTLNYVDDIVAEIKRAIE 185
>pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e
Length = 321
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/342 (19%), Positives = 126/342 (36%), Gaps = 47/342 (13%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
V + G G VG+ + L++RGD L L + R L ++
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVELVL------------RTRDEL-----------NLL 42
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQN-PNSYVHSNIAGLVSLLEVCKNANPQPA 220
D + F V AA+ G A P +++ N+ +++ + N
Sbjct: 43 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAA-HQNDVNK 101
Query: 221 IVWASSSSVYGLNTKVPFSEKDR-------TDQPASLYAATKKAGEEIAHTYNHIYGLSL 273
+++ SS +Y K P +E + T++P ++ K AG ++ +YN YG
Sbjct: 102 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPEAI---AKIAGIKLCESYNRQYGRDY 158
Query: 274 TGLRFFTVYGPWGRPDMAYFFFTRDILNR------KSIPIFESPDHGTVARDFTYIDDIV 327
+ +YGP + +L R +S P GT R+F ++DD+
Sbjct: 159 RSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMA 218
Query: 328 KGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMK 387
+ ++ A L N+G + +L + +++ K R +
Sbjct: 219 AASIHVMELAH----EVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKG-RVVFD 273
Query: 388 LPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLS 429
+ P +++ +LG+ L+ GL +W+L
Sbjct: 274 ASKPDGTPRKLLDVTRLH-QLGWYHEISLEAGLASTYQWFLE 314
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 76/180 (42%), Gaps = 20/180 (11%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+LVTG++G +GT + L + Y ++ + + GI + D++
Sbjct: 2 ILVTGSSGQIGTELVPYLAEK------------YGKKNVIASDIVQRDTGGIKFITLDVS 49
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAI 221
+ + + + S + HLA + ++P N+ G ++LE K + +
Sbjct: 50 NRDEIDRAVEKYSIDAIFHLAGILSAK-GEKDPALAYKVNMNGTYNILEAAKQHRVEKVV 108
Query: 222 VWASSSSVYGLNT---KVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRF 278
+ S+ V+G T KVP R P +++ TK A E + Y +GL + LR+
Sbjct: 109 I-PSTIGVFGPETPKNKVPSITITR---PRTMFGVTKIAAELLGQYYYEKFGLDVRSLRY 164
>pdb|3RFT|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFV|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
Length = 267
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 21/178 (11%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+LVTGAAG +G + L + +L L + + DP+ V+ D+
Sbjct: 6 LLVTGAAGQLGRVMRERLAPMAE-ILRLADLSPL-DPAGPNEE----------CVQCDLA 53
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNP-NSYVHSNIAGLVSLLEVCKNANPQPA 220
D + + V ++HL +++ P + NI GL +L E + A+ QP
Sbjct: 54 DANAVNAM--VAGCDGIVHLGG-----ISVEKPFEQILQGNIIGLYNLYEAAR-AHGQPR 105
Query: 221 IVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRF 278
IV+ASS+ G + D +P LY +K GE +A Y +G +R
Sbjct: 106 IVFASSNHTIGYYPQTERLGPDVPARPDGLYGVSKCFGENLARMYFDKFGQETALVRI 163
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 108/282 (38%), Gaps = 56/282 (19%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGD-GVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDI 160
VL+ G GF+G H+S + D V G+D D +K R E
Sbjct: 27 VLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFE----------- 75
Query: 161 NDMALLKKL--FDVVSFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQ 218
D+ + K+ + V ++ L A A ++ P + + ++
Sbjct: 76 GDITINKEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKH 135
Query: 219 PAIVWASSSSVYGLNTKVPFSEKDRT------DQPASLYAATKKAGEEIAHTYNHIYGLS 272
+V+ S+S VYG+ F ++P +YA +K+ + + I+G
Sbjct: 136 --LVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACSKQLMDRV------IWGYG 187
Query: 273 LTGLRFFTVYGP--WGRPDMAYFF------------FTRDILNRKSIPIFESPDHGTVAR 318
+ GL F T++ P W P + + F I+ ++I + D G+ R
Sbjct: 188 MEGLNF-TLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLV---DGGSQKR 243
Query: 319 DFTYIDDIVKGCLAALDTAEXXXXXXXXXXXXAQLRVFNLGN 360
FTY+DD + + ++ + A +++N+GN
Sbjct: 244 AFTYVDDGISALMKIIENSN----------GVATGKIYNIGN 275
>pdb|1I24|A Chain A, High Resolution Crystal Structure Of The Wild-Type Protein
Sqd1, With Nad And Udp-Glucose
Length = 404
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 81/215 (37%), Gaps = 31/215 (14%)
Query: 99 GISVLVTGAAGFVG----THVSAA----------LKRRGDGVLGLDNFNDYYDPSLKKAR 144
G V+V G G+ G H+S ++R D LGL++ + +R
Sbjct: 11 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISR 70
Query: 145 QALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYV---HSN 201
L I + GDI D L + F V+H Q Y+M + + V H+N
Sbjct: 71 WKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNN 130
Query: 202 IAGLVSLLEVCKNANPQPAIVWASSSSVYGL------NTKVPFSEKDRTD------QPAS 249
+ G +++L K + +V + YG + + RTD Q +S
Sbjct: 131 VIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASS 190
Query: 250 LYAATK-KAGEEIAHTYNHIYGLSLTGLRFFTVYG 283
Y +K IA T +G+ T L VYG
Sbjct: 191 FYHLSKVHDSHNIAFTCK-AWGIRATDLNQGVVYG 224
>pdb|1I2B|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-SulfoquinovoseUDP-Glucose
pdb|1I2C|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-Glucose
Length = 404
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 81/215 (37%), Gaps = 31/215 (14%)
Query: 99 GISVLVTGAAGFVG----THVSAA----------LKRRGDGVLGLDNFNDYYDPSLKKAR 144
G V+V G G+ G H+S ++R D LGL++ + +R
Sbjct: 11 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISR 70
Query: 145 QALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYV---HSN 201
L I + GDI D L + F V+H Q Y+M + + V H+N
Sbjct: 71 WKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNN 130
Query: 202 IAGLVSLLEVCKNANPQPAIVWASSSSVYGL------NTKVPFSEKDRTD------QPAS 249
+ G +++L K + +V + YG + + RTD Q +S
Sbjct: 131 VIGTLNVLFAIKEFGEECHLVKLGAMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASS 190
Query: 250 LYAATK-KAGEEIAHTYNHIYGLSLTGLRFFTVYG 283
Y +K IA T +G+ T L VYG
Sbjct: 191 FYHLSKVHDSHNIAFTCK-AWGIRATDLNQGVVYG 224
>pdb|3RFX|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
Length = 267
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 21/178 (11%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+LVTGAAG +G + L + +L L + + DP+ V+ D+
Sbjct: 6 LLVTGAAGQLGRVMRERLAPMAE-ILRLADLSPL-DPAGPNEE----------CVQCDLA 53
Query: 162 DMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNP-NSYVHSNIAGLVSLLEVCKNANPQPA 220
D + + V ++HL +++ P + NI GL +L E + A+ QP
Sbjct: 54 DANAVNAM--VAGCDGIVHLGG-----ISVEKPFEQILQGNIIGLYNLYEAAR-AHGQPR 105
Query: 221 IVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRF 278
IV+ASS+ G + D +P L +K GE +A Y +G +R
Sbjct: 106 IVFASSNHTIGYYPQTERLGPDVPARPDGLAGVSKCFGENLARMYFDKFGQETALVRI 163
>pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And
Udp- Glucose
Length = 394
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 80/212 (37%), Gaps = 31/212 (14%)
Query: 102 VLVTGAAGFVG----THVSAA----------LKRRGDGVLGLDNFNDYYDPSLKKARQAL 147
V+V G G+ G H+S ++R D LGL++ + +R
Sbjct: 4 VMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKA 63
Query: 148 LERSGIFIVEGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYV---HSNIAG 204
L I + GDI D L + F V+H Q Y+M + + V H+N+ G
Sbjct: 64 LTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIG 123
Query: 205 LVSLLEVCKNANPQPAIVWASSSSVYGL------NTKVPFSEKDRTD------QPASLYA 252
+++L K + +V + YG + + RTD Q +S Y
Sbjct: 124 TLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYH 183
Query: 253 ATK-KAGEEIAHTYNHIYGLSLTGLRFFTVYG 283
+K IA T +G+ T L VYG
Sbjct: 184 LSKVHDSHNIAFTCK-AWGIRATDLNQGVVYG 214
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 99/244 (40%), Gaps = 32/244 (13%)
Query: 101 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLE----RSGIFIV 156
+V VTGA+GF+G+ + L RG V DP+ K + LL+ + + +
Sbjct: 7 TVCVTGASGFIGSWLVMRLLERGYTVRA-----TVRDPTNVKKVKHLLDLPKAETHLTLW 61
Query: 157 EGDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNP-NSYVHSNIAGLVSLLEVCKNA 215
+ D+ D + + T V H+A + + ++P N + I G++ +++ C A
Sbjct: 62 KADLADEGSFDEA--IKGCTGVFHVATP--MDFESKDPENEVIKPTIEGMLGIMKSCAAA 117
Query: 216 NPQPAIVWASSSSVYGLNT-KVP-FSEKDRTDQP--------ASLYAATKKAGEEIAHTY 265
+V+ SS+ + ++P + E +D A +Y +K E+ A Y
Sbjct: 118 KTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKY 177
Query: 266 NHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILNRKSIPIFESPDHGTVAR--DFTYI 323
+ + V GP+ M T PI + H ++ R F ++
Sbjct: 178 AKENNIDFITIIPTLVVGPFIMSSMPPSLIT------ALSPITGNEAHYSIIRQGQFVHL 231
Query: 324 DDIV 327
DD+
Sbjct: 232 DDLC 235
>pdb|3DKT|A Chain A, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|B Chain B, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|C Chain C, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|D Chain D, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|E Chain E, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|F Chain F, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|G Chain G, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|H Chain H, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|I Chain I, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|J Chain J, Crystal Structure Of Thermotoga Maritima Encapsulin
Length = 265
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Query: 254 TKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILN----------RK 303
T+K +EI + I+ L G +F V GP+G A+ ++L+ RK
Sbjct: 12 TEKQWQEIDNRAREIFKTQLYGRKFVDVEGPYGWEYAAHPLGEVEVLSDENEVVKWGLRK 71
Query: 304 SIPIFESPDHGTVARDFTYIDDIVKG 329
S+P+ E T D +D++ +G
Sbjct: 72 SLPLIEL--RATFTLDLWELDNLERG 95
>pdb|1JXQ|A Chain A, Structure Of Cleaved, Card Domain Deleted Caspase-9
pdb|1JXQ|B Chain B, Structure Of Cleaved, Card Domain Deleted Caspase-9
pdb|1JXQ|C Chain C, Structure Of Cleaved, Card Domain Deleted Caspase-9
pdb|1JXQ|D Chain D, Structure Of Cleaved, Card Domain Deleted Caspase-9
Length = 284
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 57 RSPSSNPLPSADPSRRSLRTYD 78
SP SNP P A P + LRT+D
Sbjct: 168 ESPGSNPEPDATPFQEGLRTFD 189
>pdb|1NW9|B Chain B, Structure Of Caspase-9 In An Inhibitory Complex With Xiap-
Bir3
Length = 277
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 57 RSPSSNPLPSADPSRRSLRTYD 78
SP SNP P A P + LRT+D
Sbjct: 167 ESPGSNPEPDATPFQEGLRTFD 188
>pdb|2AR9|A Chain A, Crystal Structure Of A Dimeric Caspase-9
pdb|2AR9|B Chain B, Crystal Structure Of A Dimeric Caspase-9
pdb|2AR9|C Chain C, Crystal Structure Of A Dimeric Caspase-9
pdb|2AR9|D Chain D, Crystal Structure Of A Dimeric Caspase-9
Length = 278
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 57 RSPSSNPLPSADPSRRSLRTYD 78
SP SNP P A P + LRT+D
Sbjct: 168 ESPGSNPEPDATPFQEGLRTFD 189
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 58/150 (38%), Gaps = 17/150 (11%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSG----IFIVE 157
V VTG GF+G+ + +L G V N DP K+ L G +
Sbjct: 4 VCVTGGTGFLGSWIIKSLLENGYSV----NTTIRADPERKRDVSFLTNLPGASEKLHFFN 59
Query: 158 GDINDMALLKKLFDVVSFTHVMHLAAQAGVRYAMQNPNSYV-HSNIAGLVSLLEVCKNAN 216
D+++ + + H A+ + +A+ P V + G + +L+ C N+
Sbjct: 60 ADLSNPDSFAAAIE--GCVGIFHTASP--IDFAVSEPEEIVTKRTVDGALGILKACVNSK 115
Query: 217 PQPAIVWASSSSVYGLNTKVPFSEKDRTDQ 246
++ SS S N K +KD D+
Sbjct: 116 TVKRFIYTSSGSAVSFNGK----DKDVLDE 141
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLG 128
G VLVTGA GFV +HV L G V G
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRG 40
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 98 NGISVLVTGAAGFVGTHVSAALKRRGDGVLG 128
G VLVTGA GFV +HV L G V G
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRG 40
>pdb|3I52|A Chain A, Ternary Complex Structure Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I5M|A Chain A, Structure Of The Apo Form Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I6I|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase - Nadph From Vitis Vinifera
pdb|3I6Q|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase-Nadph From Vitis Vinifera
Length = 346
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 18/77 (23%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYY--------DPSLKKARQALLERSGI 153
VL+ GA GF+G V+ A LD Y PS K +A LE G
Sbjct: 13 VLIAGATGFIGQFVATA---------SLDAHRPTYILARPGPRSPSKAKIFKA-LEDKGA 62
Query: 154 FIVEGDINDMALLKKLF 170
IV G IN+ ++K+
Sbjct: 63 IIVYGLINEQEAMEKIL 79
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDIN 161
+L+ GA G++G HV+ A G L + S K + SG IV G I+
Sbjct: 7 ILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSID 66
Query: 162 DMALL----KKLFDVVSFTHVMHLAAQAGVRYAMQN 193
D A L K + V+S + + +Q + A++
Sbjct: 67 DHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKE 102
>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
pdb|2BC0|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
Length = 490
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN----DYYDPSLKKARQALLERSGIFIVE 157
V V GA G++G ++ A +R+G V+ +D + YYD L +E GI +
Sbjct: 197 VAVVGA-GYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAF 255
Query: 158 GD 159
G+
Sbjct: 256 GE 257
>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BC1|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BCP|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
pdb|2BCP|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
Length = 490
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN----DYYDPSLKKARQALLERSGIFIVE 157
V V GA G++G ++ A +R+G V+ +D + YYD L +E GI +
Sbjct: 197 VAVVGA-GYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAF 255
Query: 158 GD 159
G+
Sbjct: 256 GE 257
>pdb|2GAS|A Chain A, Crystal Structure Of Isoflavone Reductase
pdb|2GAS|B Chain B, Crystal Structure Of Isoflavone Reductase
Length = 307
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 102 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFN-DYYDPSLKKARQALLERSGIFIVEGDI 160
+L+ G G +G H+ A + G+ L +P K+ + G+ ++EGDI
Sbjct: 5 ILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDI 64
Query: 161 NDMALLKKLFDVVSFT 176
ND L K V
Sbjct: 65 NDHETLVKAIKQVDIV 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,379,014
Number of Sequences: 62578
Number of extensions: 473122
Number of successful extensions: 1280
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1054
Number of HSP's gapped (non-prelim): 115
length of query: 439
length of database: 14,973,337
effective HSP length: 102
effective length of query: 337
effective length of database: 8,590,381
effective search space: 2894958397
effective search space used: 2894958397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)