Query 013603
Match_columns 439
No_of_seqs 115 out of 133
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 05:31:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013603.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013603hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06886 TPX2: Targeting prote 99.8 1.3E-19 2.8E-24 139.9 7.7 57 221-277 1-57 (57)
2 PF12214 TPX2_importin: Cell c 77.0 1.8 3.9E-05 40.9 2.4 62 215-307 69-130 (176)
3 KOG2891 Surface glycoprotein [ 50.7 30 0.00065 36.1 5.3 43 219-264 382-425 (445)
4 KOG3654 Uncharacterized CH dom 45.9 60 0.0013 36.2 6.9 29 226-254 93-121 (708)
5 PF11690 DUF3287: Protein of u 45.2 73 0.0016 28.5 6.2 49 217-265 27-76 (109)
6 PF10595 UPF0564: Uncharacteri 43.1 40 0.00088 34.1 4.9 53 215-280 5-57 (356)
7 PF09121 Tower: Tower; InterP 41.6 28 0.00061 26.8 2.7 37 215-253 5-41 (42)
8 PRK13729 conjugal transfer pil 38.4 1.2E+02 0.0025 33.2 7.6 67 212-279 55-130 (475)
9 PF04696 Pinin_SDK_memA: pinin 30.6 3E+02 0.0066 24.6 7.8 20 224-243 31-50 (131)
10 PF12214 TPX2_importin: Cell c 30.2 1.7E+02 0.0037 28.1 6.5 42 260-305 32-76 (176)
11 PF08581 Tup_N: Tup N-terminal 28.6 2.1E+02 0.0046 24.1 6.1 43 229-271 26-74 (79)
12 PF07716 bZIP_2: Basic region 27.6 1.9E+02 0.0042 21.7 5.3 26 228-253 21-46 (54)
13 PF04006 Mpp10: Mpp10 protein; 27.1 53 0.0011 35.8 3.0 37 257-293 462-498 (600)
14 PRK13922 rod shape-determining 26.5 1.9E+02 0.004 27.9 6.2 43 234-276 71-115 (276)
15 PF07946 DUF1682: Protein of u 24.5 1.3E+02 0.0027 30.3 4.8 9 218-226 249-257 (321)
16 PF04696 Pinin_SDK_memA: pinin 23.8 3.2E+02 0.0069 24.4 6.8 24 260-284 90-113 (131)
17 PF12329 TMF_DNA_bd: TATA elem 22.5 2.3E+02 0.005 23.2 5.2 36 234-269 4-41 (74)
18 TIGR00219 mreC rod shape-deter 22.4 2.4E+02 0.0053 28.0 6.3 41 236-276 70-113 (283)
19 PF13815 Dzip-like_N: Iguana/D 22.3 2.2E+02 0.0048 24.7 5.3 46 221-270 72-117 (118)
20 PF15389 DUF4612: Domain of un 21.2 1.6E+02 0.0035 26.7 4.4 23 221-243 82-104 (115)
No 1
>PF06886 TPX2: Targeting protein for Xklp2 (TPX2); InterPro: IPR009675 This family represents a conserved region approximately 60 residues long within the eukaryotic targeting protein for Xklp2 (TPX2). Xklp2 is a kinesin-like protein localised on centrosomes throughout the cell cycle and on spindle pole microtubules during metaphase. In Xenopus, it has been shown that Xklp2 protein is required for centrosome separation and maintenance of spindle bi-polarity []. TPX2 is a microtubule-associated protein that mediates the binding of the C-terminal domain of Xklp2 to microtubules. It is phosphorylated during mitosis in a microtubule-dependent way [].
Probab=99.80 E-value=1.3e-19 Score=139.90 Aligned_cols=57 Identities=61% Similarity=0.788 Sum_probs=56.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhccccCCCC
Q 013603 221 FRCDERAEKRREFYSKLEEKIHAKEVEKSTLQAKSKETQEAEIKMLRKSLNFKATPM 277 (439)
Q Consensus 221 frsDERAeKRKEFy~KLEEK~~AkEaEK~qlQAKsKEEeEaEIKqLRKSLvFKAtPm 277 (439)
|+||+||++|+|||.+|+||++++|+++.+++++++++++++|++|||+|||||+||
T Consensus 1 l~t~~RA~~R~eF~~kl~EK~~~~e~~~~~~e~~~~e~ee~eik~LRk~lv~kA~Pm 57 (57)
T PF06886_consen 1 LHTDERAEERKEFDKKLEEKEKAKEAEKEEREAKQKEEEEEEIKQLRKELVFKAQPM 57 (57)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 799999999999999999999999999999999999999999999999999999998
No 2
>PF12214 TPX2_importin: Cell cycle regulated microtubule associated protein; InterPro: IPR022021 This domain is found in eukaryotes. This domain is typically between 127 to 182 amino acids in length. This domain is found associated with PF06886 from PFAM. This domain is found in the protein TPX2 (a.k.a p100) which is involved in cell cycling. It is only expressed between the start of the S phase and completion of cytokinesis. The microtubule-associated protein TPX2 has been reported to be crucial for mitotic spindle formation. This domain is close to the C-terminal of TPX2. The protein importin alpha regulates the activity of TPX2 by binding to the nuclear localisation signal in this domain.
Probab=77.05 E-value=1.8 Score=40.95 Aligned_cols=62 Identities=27% Similarity=0.414 Sum_probs=42.0
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhccccCCCCCCcCCCCCCCCCCCCCC
Q 013603 215 PNYGFSFRCDERAEKRREFYSKLEEKIHAKEVEKSTLQAKSKETQEAEIKMLRKSLNFKATPMPTFYQEPPPPKVELKKI 294 (439)
Q Consensus 215 ~~s~F~frsDERAeKRKEFy~KLEEK~~AkEaEK~qlQAKsKEEeEaEIKqLRKSLvFKAtPmPsFYqe~~pPK~elKKi 294 (439)
..++|.|++++||..|.. ..+.++ ....|+++|......... -.+.+-.
T Consensus 69 ~p~~F~L~T~~Ra~~r~~-~~~~~~----------------------------~~~~~~srp~ki~~~~~~--~p~~~~~ 117 (176)
T PF12214_consen 69 EPQEFHLETEERAQQRSS-SVSSSE----------------------------EQFNFHSRPCKILEDVPG--VPEKKVL 117 (176)
T ss_pred cccCceeehhhhhhcccc-ccccch----------------------------hhcccccCccccccCCCC--Ccccccc
Confidence 468999999999998854 111111 114789999944444433 4455566
Q ss_pred CCCCCCCCCCCCC
Q 013603 295 PTTRAKSPKLGRR 307 (439)
Q Consensus 295 P~TRPKSPKlgRr 307 (439)
++|.|+||+|..+
T Consensus 118 ~~t~p~sp~~~~k 130 (176)
T PF12214_consen 118 PVTVPKSPAFALK 130 (176)
T ss_pred ccCCCCChhhhcc
Confidence 9999999999744
No 3
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=50.69 E-value=30 Score=36.09 Aligned_cols=43 Identities=37% Similarity=0.591 Sum_probs=31.8
Q ss_pred ccc-chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHH
Q 013603 219 FSF-RCDERAEKRREFYSKLEEKIHAKEVEKSTLQAKSKETQEAEIK 264 (439)
Q Consensus 219 F~f-rsDERAeKRKEFy~KLEEK~~AkEaEK~qlQAKsKEEeEaEIK 264 (439)
|.| +-+-|-++|+. |-+||+++.+.-..+||.+.++++.+-+-
T Consensus 382 f~fekieareerrkq---keeeklk~e~qkikeleek~~eeedal~~ 425 (445)
T KOG2891|consen 382 FEFEKIEAREERRKQ---KEEEKLKAEEQKIKELEEKIKEEEDALLL 425 (445)
T ss_pred HHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445 55556666664 78888888888888999988888776443
No 4
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=45.90 E-value=60 Score=36.15 Aligned_cols=29 Identities=34% Similarity=0.339 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 013603 226 RAEKRREFYSKLEEKIHAKEVEKSTLQAK 254 (439)
Q Consensus 226 RAeKRKEFy~KLEEK~~AkEaEK~qlQAK 254 (439)
=|..=-++.++||||..|.|++|..++|.
T Consensus 93 lasemv~l~m~leekrraieaqkkkmea~ 121 (708)
T KOG3654|consen 93 LASEMVELSMRLEEKRRAIEAQKKKMEAI 121 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455688899999999999999999984
No 5
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=45.17 E-value=73 Score=28.52 Aligned_cols=49 Identities=14% Similarity=0.192 Sum_probs=35.4
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH-HHHHHHHH
Q 013603 217 YGFSFRCDERAEKRREFYSKLEEKIHAKEVEKSTLQAKSKE-TQEAEIKM 265 (439)
Q Consensus 217 s~F~frsDERAeKRKEFy~KLEEK~~AkEaEK~qlQAKsKE-EeEaEIKq 265 (439)
.-|.--+++..+....|+.||+.+++++-.|+.+|..|-.. .-|-+++.
T Consensus 27 ~~f~~~~~kd~~ea~~F~~kV~~qH~~~~~e~r~L~kKi~~l~veRkmr~ 76 (109)
T PF11690_consen 27 AVFRHLPSKDKKEAYDFIDKVVDQHQRYCDERRKLRKKIQDLRVERKMRA 76 (109)
T ss_pred HHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44533456677778899999999999999999999887543 33434443
No 6
>PF10595 UPF0564: Uncharacterised protein family UPF0564; InterPro: IPR019579 This entry represents proteins with no known function.
Probab=43.05 E-value=40 Score=34.09 Aligned_cols=53 Identities=34% Similarity=0.463 Sum_probs=26.5
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhccccCCCCCCc
Q 013603 215 PNYGFSFRCDERAEKRREFYSKLEEKIHAKEVEKSTLQAKSKETQEAEIKMLRKSLNFKATPMPTF 280 (439)
Q Consensus 215 ~~s~F~frsDERAeKRKEFy~KLEEK~~AkEaEK~qlQAKsKEEeEaEIKqLRKSLvFKAtPmPsF 280 (439)
++.+|.|-. |-+++++--.+-. ...|.+...++.+ ++|++.. --|+|+|||.+
T Consensus 5 VP~PF~mt~--RE~~kk~~~~~~~---~~~e~~~~~~~~~---~ee~e~~-----k~FrA~pVP~~ 57 (356)
T PF10595_consen 5 VPKPFQMTL--REEEKKEKASKSQ---SDLEQEKKELKKQ---EEEAECK-----KKFRANPVPAH 57 (356)
T ss_pred CCCCCCccH--HHHhccchhhhhH---HHHHHHHHHHHHH---HHHHHhc-----cCCCCCCCCch
Confidence 456777754 6666655111111 0122222222222 3445554 38999999974
No 7
>PF09121 Tower: Tower; InterPro: IPR015205 This domain adopts a secondary structure consisting of a pair of long, antiparallel alpha-helices (the stem) that support a three-helix bundle (3HB) at their end. The 3HB contains a helix-turn-helix motif and is similar to the DNA binding domains of the bacterial site-specific recombinases, and of eukaryotic Myb and homeodomain transcription factors. The Tower domain has an important role in the tumour suppressor function of BRCA2, and is essential for appropriate binding of BRCA2 to DNA []. ; PDB: 1IYJ_D 1MIU_A.
Probab=41.64 E-value=28 Score=26.77 Aligned_cols=37 Identities=32% Similarity=0.399 Sum_probs=25.9
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 013603 215 PNYGFSFRCDERAEKRREFYSKLEEKIHAKEVEKSTLQA 253 (439)
Q Consensus 215 ~~s~F~frsDERAeKRKEFy~KLEEK~~AkEaEK~qlQA 253 (439)
|.-.|.||+ +|||.| |=-..-+.+.+++|+.-..+|+
T Consensus 5 ~~G~~vFRn-~RaEek-EA~k~a~~qqkklE~Lf~kIQ~ 41 (42)
T PF09121_consen 5 PSGSYVFRN-ERAEEK-EAAKHAEAQQKKLEALFTKIQA 41 (42)
T ss_dssp SSSSEEEE--CCHHHH-HHHHHHHHTTSHHHHHHHHHHT
T ss_pred CCCceEeec-chHHHH-HHHHHHHHHHHHHHHHHHHHhc
Confidence 455788998 588877 5556677777888877766664
No 8
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=38.43 E-value=1.2e+02 Score=33.18 Aligned_cols=67 Identities=12% Similarity=0.135 Sum_probs=36.4
Q ss_pred cccCCCCcccchhH-----HHHHHHHHHHHHHHHHhHHH---HHHHHHHHHhHHHHHHHHHHHHHhccc-cCCCCCC
Q 013603 212 GALPNYGFSFRCDE-----RAEKRREFYSKLEEKIHAKE---VEKSTLQAKSKETQEAEIKMLRKSLNF-KATPMPT 279 (439)
Q Consensus 212 gs~~~s~F~frsDE-----RAeKRKEFy~KLEEK~~AkE---aEK~qlQAKsKEEeEaEIKqLRKSLvF-KAtPmPs 279 (439)
+-++...|.-+.+. ...+..||.++|+.=.+.++ +.+..+|++. ++.|++|++|+..|.- ++.|...
T Consensus 55 ~~vV~~~FddkVnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KI-keLEaE~~~Lk~Ql~a~~~~~~~~ 130 (475)
T PRK13729 55 TGVVDTTFDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRI-EKLGQDNAALAEQVKALGANPVTA 130 (475)
T ss_pred cceecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHHHHHHhhhcCCCCC
Confidence 33455566555443 33466666666665222222 2233333333 3678899999998843 5565544
No 9
>PF04696 Pinin_SDK_memA: pinin/SDK/memA/ protein conserved region; InterPro: IPR006786 This conserved region is located adjacent and C-terminal to a N-terminal pinin/SKD domain IPR006787 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque []. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=30.56 E-value=3e+02 Score=24.56 Aligned_cols=20 Identities=35% Similarity=0.591 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHhH
Q 013603 224 DERAEKRREFYSKLEEKIHA 243 (439)
Q Consensus 224 DERAeKRKEFy~KLEEK~~A 243 (439)
...+.+|.+...+|+||...
T Consensus 31 ~~~~~rR~eie~rleek~~~ 50 (131)
T PF04696_consen 31 TEQQKRRAEIEKRLEEKLKE 50 (131)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 36888999999999998754
No 10
>PF12214 TPX2_importin: Cell cycle regulated microtubule associated protein; InterPro: IPR022021 This domain is found in eukaryotes. This domain is typically between 127 to 182 amino acids in length. This domain is found associated with PF06886 from PFAM. This domain is found in the protein TPX2 (a.k.a p100) which is involved in cell cycling. It is only expressed between the start of the S phase and completion of cytokinesis. The microtubule-associated protein TPX2 has been reported to be crucial for mitotic spindle formation. This domain is close to the C-terminal of TPX2. The protein importin alpha regulates the activity of TPX2 by binding to the nuclear localisation signal in this domain.
Probab=30.18 E-value=1.7e+02 Score=28.05 Aligned_cols=42 Identities=33% Similarity=0.492 Sum_probs=26.6
Q ss_pred HHHHHHHHHhccccCCCCCCcCC---CCCCCCCCCCCCCCCCCCCCCCC
Q 013603 260 EAEIKMLRKSLNFKATPMPTFYQ---EPPPPKVELKKIPTTRAKSPKLG 305 (439)
Q Consensus 260 EaEIKqLRKSLvFKAtPmPsFYq---e~~pPK~elKKiP~TRPKSPKlg 305 (439)
++||.++ --|||+|+..=.- ....|+....| ++|-|.-..|.
T Consensus 32 ~eel~~~---~kFKArpln~kIle~~~~~~~~k~~~k-~~T~p~~F~L~ 76 (176)
T PF12214_consen 32 EEELAKI---PKFKARPLNKKILEAPGPPGPKKSTPK-PPTEPQEFHLE 76 (176)
T ss_pred HHHHHhh---hhhhccccChhhhccCCCCCCCCCCCC-CCCcccCceee
Confidence 3445544 5799999976321 23344545544 78899998885
No 11
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=28.62 E-value=2.1e+02 Score=24.06 Aligned_cols=43 Identities=26% Similarity=0.408 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhHHHHHH------HHHHHHhHHHHHHHHHHHHHhcc
Q 013603 229 KRREFYSKLEEKIHAKEVEK------STLQAKSKETQEAEIKMLRKSLN 271 (439)
Q Consensus 229 KRKEFy~KLEEK~~AkEaEK------~qlQAKsKEEeEaEIKqLRKSLv 271 (439)
.+.+|..||.--+..+..-+ ...+.+-|+.=|+||.+||..|-
T Consensus 26 ~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 26 QKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777666555444322 22334568888999999999874
No 12
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=27.64 E-value=1.9e+02 Score=21.74 Aligned_cols=26 Identities=19% Similarity=0.403 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 013603 228 EKRREFYSKLEEKIHAKEVEKSTLQA 253 (439)
Q Consensus 228 eKRKEFy~KLEEK~~AkEaEK~qlQA 253 (439)
.+++++...|+..+..++.+..+|+.
T Consensus 21 ~rkk~~~~~le~~~~~L~~en~~L~~ 46 (54)
T PF07716_consen 21 QRKKQREEELEQEVQELEEENEQLRQ 46 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888888888877754
No 13
>PF04006 Mpp10: Mpp10 protein; InterPro: IPR007151 This family includes proteins related to Mpp10 (M phase phosphoprotein 10). The U3 small nucleolar ribonucleoprotein (snoRNP) is required for three cleavage events that generate the mature 18S rRNA from the pre-rRNA. In Saccharomyces cerevisiae, depletion of Mpp10, a U3 snoRNP-specific protein, halts 18S rRNA production and impairs cleavage at the three U3 snoRNP-dependent sites [].
Probab=27.08 E-value=53 Score=35.79 Aligned_cols=37 Identities=35% Similarity=0.568 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhccccCCCCCCcCCCCCCCCCCCCC
Q 013603 257 ETQEAEIKMLRKSLNFKATPMPTFYQEPPPPKVELKK 293 (439)
Q Consensus 257 EEeEaEIKqLRKSLvFKAtPmPsFYqe~~pPK~elKK 293 (439)
..+..||+.|.+.|++|-.-+-+||..|.||..+++-
T Consensus 462 ~~~~~ei~~l~~~l~~kLDaLsn~hf~Pk~~~~~~~v 498 (600)
T PF04006_consen 462 DKEHEEIKELFKKLCYKLDALSNFHFTPKPPQPEIKV 498 (600)
T ss_pred hHHHHHHHHHHHHHHHHhhccccCCcCCCCCcccccc
Confidence 3466789999999999999999999999999888863
No 14
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=26.53 E-value=1.9e+02 Score=27.86 Aligned_cols=43 Identities=30% Similarity=0.287 Sum_probs=30.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhH--HHHHHHHHHHHHhccccCCC
Q 013603 234 YSKLEEKIHAKEVEKSTLQAKSK--ETQEAEIKMLRKSLNFKATP 276 (439)
Q Consensus 234 y~KLEEK~~AkEaEK~qlQAKsK--EEeEaEIKqLRKSLvFKAtP 276 (439)
|..|.+.+..+++|..++++... ++-++|..+||+-|.++-..
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~~~~ 115 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLKESL 115 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 45666667777777777766533 56678889999999888654
No 15
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=24.52 E-value=1.3e+02 Score=30.29 Aligned_cols=9 Identities=11% Similarity=0.379 Sum_probs=5.6
Q ss_pred CcccchhHH
Q 013603 218 GFSFRCDER 226 (439)
Q Consensus 218 ~F~frsDER 226 (439)
.|.|+.+-+
T Consensus 249 ~~~l~~e~~ 257 (321)
T PF07946_consen 249 RFKLSPEAK 257 (321)
T ss_pred eeeeCHHHH
Confidence 566776653
No 16
>PF04696 Pinin_SDK_memA: pinin/SDK/memA/ protein conserved region; InterPro: IPR006786 This conserved region is located adjacent and C-terminal to a N-terminal pinin/SKD domain IPR006787 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque []. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=23.76 E-value=3.2e+02 Score=24.42 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=14.7
Q ss_pred HHHHHHHHHhccccCCCCCCcCCCC
Q 013603 260 EAEIKMLRKSLNFKATPMPTFYQEP 284 (439)
Q Consensus 260 EaEIKqLRKSLvFKAtPmPsFYqe~ 284 (439)
++-+..|..-|.-||.| +-||.+.
T Consensus 90 ~~~~~~l~~fi~Tkt~P-~iyy~P~ 113 (131)
T PF04696_consen 90 HEHYLALANFIRTKTEP-HIYYLPW 113 (131)
T ss_pred HHHHHHHHhhcccCCCC-ceeeccc
Confidence 34445566666677777 4577664
No 17
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=22.54 E-value=2.3e+02 Score=23.19 Aligned_cols=36 Identities=25% Similarity=0.112 Sum_probs=16.0
Q ss_pred HHHHHHHHhHHHHHHHHHHH--HhHHHHHHHHHHHHHh
Q 013603 234 YSKLEEKIHAKEVEKSTLQA--KSKETQEAEIKMLRKS 269 (439)
Q Consensus 234 y~KLEEK~~AkEaEK~qlQA--KsKEEeEaEIKqLRKS 269 (439)
..+|.||-....+.+.+-|. +..-....-||+||..
T Consensus 4 ~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~ 41 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAK 41 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34555533333333333333 2334445556666653
No 18
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=22.36 E-value=2.4e+02 Score=28.01 Aligned_cols=41 Identities=20% Similarity=0.064 Sum_probs=25.1
Q ss_pred HHHHHHhHHHHHHHHHHHHh---HHHHHHHHHHHHHhccccCCC
Q 013603 236 KLEEKIHAKEVEKSTLQAKS---KETQEAEIKMLRKSLNFKATP 276 (439)
Q Consensus 236 KLEEK~~AkEaEK~qlQAKs---KEEeEaEIKqLRKSLvFKAtP 276 (439)
.|.+.+..+..|..+++++. .++-++|..+||+-|.|+...
T Consensus 70 ~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~~~~ 113 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSPLSS 113 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 34444444444444443322 234778999999999999753
No 19
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=22.32 E-value=2.2e+02 Score=24.66 Aligned_cols=46 Identities=33% Similarity=0.501 Sum_probs=29.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Q 013603 221 FRCDERAEKRREFYSKLEEKIHAKEVEKSTLQAKSKETQEAEIKMLRKSL 270 (439)
Q Consensus 221 frsDERAeKRKEFy~KLEEK~~AkEaEK~qlQAKsKEEeEaEIKqLRKSL 270 (439)
|+|-+.-..- ...|++++.....+..+++.+.++ ..++|++||+++
T Consensus 72 l~~q~~L~~~---~~~l~~~~~~~~~~~~~l~~~~~~-~~~~~k~lk~E~ 117 (118)
T PF13815_consen 72 LHCQEYLSSQ---LEQLEERLQELQQEIEKLKQKLKK-QKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence 4454443333 347777777777777777766544 446799999875
No 20
>PF15389 DUF4612: Domain of unknown function (DUF4612)
Probab=21.21 E-value=1.6e+02 Score=26.71 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=18.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHhH
Q 013603 221 FRCDERAEKRREFYSKLEEKIHA 243 (439)
Q Consensus 221 frsDERAeKRKEFy~KLEEK~~A 243 (439)
+.+.+=.+-.++||+.|-|||..
T Consensus 82 ~~~~~iS~SQqdFFRMLDeKIek 104 (115)
T PF15389_consen 82 LQSIHISESQQDFFRMLDEKIEK 104 (115)
T ss_pred ccchhhhHHHHHHHHHHHHHHHc
Confidence 44556678889999999999864
Done!