Query 013603
Match_columns 439
No_of_seqs 115 out of 133
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 13:40:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013603.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013603hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3b8ma1 d.58.60.1 (A:64-330) E 16.2 1.4E+02 0.01 25.4 6.7 46 226-271 137-182 (267)
2 d3b8oa1 d.58.60.1 (A:55-319) L 15.2 1.4E+02 0.01 25.7 6.4 46 226-271 134-179 (265)
3 d3b8pa1 d.58.60.1 (A:54-292) C 12.7 1.2E+02 0.0091 25.6 5.3 46 226-271 107-152 (239)
4 d1mjea2 a.171.1.1 (A:2752-2887 10.6 73 0.0053 22.4 2.4 37 215-253 5-41 (49)
5 d1f5na1 a.114.1.1 (A:284-583) 9.6 2.5E+02 0.018 22.4 5.9 18 232-249 229-246 (300)
6 d2awia1 a.35.1.11 (A:2-66) Prg 8.5 62 0.0045 23.5 1.4 14 261-274 5-18 (65)
7 d1iyjb2 a.171.1.1 (B:2761-2897 6.1 76 0.0055 26.0 0.9 42 215-258 5-46 (137)
8 d1nkpa_ a.38.1.1 (A:) Myc prot 6.0 4.1E+02 0.03 18.6 5.1 22 232-253 52-73 (88)
9 d1gvea_ c.1.7.1 (A:) Aflatoxin 5.8 90 0.0066 26.5 1.2 23 260-282 302-324 (324)
10 d1t11a1 a.223.1.1 (A:248-376) 5.5 2.2E+02 0.016 20.8 3.3 25 244-268 16-40 (129)
No 1
>d3b8ma1 d.58.60.1 (A:64-330) Enterochelin transport protein FepE {Escherichia coli [TaxId: 562]}
Probab=16.20 E-value=1.4e+02 Score=25.40 Aligned_cols=46 Identities=26% Similarity=0.227 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Q 013603 226 RAEKRREFYSKLEEKIHAKEVEKSTLQAKSKETQEAEIKMLRKSLN 271 (439)
Q Consensus 226 RAeKRKEFy~KLEEK~~AkEaEK~qlQAKsKEEeEaEIKqLRKSLv 271 (439)
|.+--.+|...|+.|.+..+.+....+.+.+++.+.+|.+|...|.
T Consensus 137 ~~~l~~~~~~~i~~~~~~l~~~~~~~~~~ak~~~~~~i~~l~~Al~ 182 (267)
T d3b8ma1 137 VKESIENVRNKLEIKTQFEKEKLAQDRIKMKNQLDANIQRLNYSLD 182 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444667888899999999999999999999999999999987553
No 2
>d3b8oa1 d.58.60.1 (A:55-319) Lipopolysaccharide biosynthesis protein WzzE {Escherichia coli [TaxId: 562]}
Probab=15.24 E-value=1.4e+02 Score=25.66 Aligned_cols=46 Identities=7% Similarity=0.122 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Q 013603 226 RAEKRREFYSKLEEKIHAKEVEKSTLQAKSKETQEAEIKMLRKSLN 271 (439)
Q Consensus 226 RAeKRKEFy~KLEEK~~AkEaEK~qlQAKsKEEeEaEIKqLRKSLv 271 (439)
+.+--.+|...++.+....+.+...+++..+.+.+.+|.+|+..|.
T Consensus 134 ~~~l~~~l~~~i~~~~~~l~~~~~~~~~~ak~~~~~~I~~L~~AL~ 179 (265)
T d3b8oa1 134 ASHLNDELKGAWAARTIQMKAQVKRQEEVAKAIYDRRMNSIEQALK 179 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667888899999999999999999999999999999997553
No 3
>d3b8pa1 d.58.60.1 (A:54-292) Chain length determinant protein WzzB {Salmonella typhimurium [TaxId: 90371]}
Probab=12.69 E-value=1.2e+02 Score=25.65 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Q 013603 226 RAEKRREFYSKLEEKIHAKEVEKSTLQAKSKETQEAEIKMLRKSLN 271 (439)
Q Consensus 226 RAeKRKEFy~KLEEK~~AkEaEK~qlQAKsKEEeEaEIKqLRKSLv 271 (439)
+.+--.+|...++.|.+..+.+...+++..|...+.+|.+|...|.
T Consensus 107 ~~~l~~~i~~~i~~~~~~l~~~~~~~~~~ak~~~~~~I~~l~~AL~ 152 (239)
T d3b8pa1 107 AKELEVDLKDNITLQTKTLQESLETQEVVAQEQKDLRIKQIEEALR 152 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556778888888889999999999999999999999988654
No 4
>d1mjea2 a.171.1.1 (A:2752-2887) BRCA2 tower domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.61 E-value=73 Score=22.41 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=22.3
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 013603 215 PNYGFSFRCDERAEKRREFYSKLEEKIHAKEVEKSTLQA 253 (439)
Q Consensus 215 ~~s~F~frsDERAeKRKEFy~KLEEK~~AkEaEK~qlQA 253 (439)
|...|.||. +|||.| |=-.--+-+.+.+|+.-..+|+
T Consensus 5 ~~G~~iFRn-~R~Eek-EA~k~a~~qqKklE~LftKIq~ 41 (49)
T d1mjea2 5 VSGLYIFRS-EREEEK-EALRFAEAQQKKLEALFTKVHT 41 (49)
T ss_dssp TTSCEEEEC-GGGTTH-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCceeeec-chHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 556788987 577766 3334445555666666555554
No 5
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.55 E-value=2.5e+02 Score=22.39 Aligned_cols=18 Identities=11% Similarity=0.014 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhHHHHHHH
Q 013603 232 EFYSKLEEKIHAKEVEKS 249 (439)
Q Consensus 232 EFy~KLEEK~~AkEaEK~ 249 (439)
++...+++.....+.+..
T Consensus 229 ~~~~~~e~~~~~~ee~~~ 246 (300)
T d1f5na1 229 KNEQMMEQKERSYQEHLK 246 (300)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444443333
No 6
>d2awia1 a.35.1.11 (A:2-66) PrgX {Enterococcus faecalis [TaxId: 1351]}
Probab=8.46 E-value=62 Score=23.50 Aligned_cols=14 Identities=29% Similarity=0.636 Sum_probs=11.4
Q ss_pred HHHHHHHHhccccC
Q 013603 261 AEIKMLRKSLNFKA 274 (439)
Q Consensus 261 aEIKqLRKSLvFKA 274 (439)
.-|||+||+|+|+-
T Consensus 5 ~~lkqir~elnyhq 18 (65)
T d2awia1 5 SVLKQIRQELNYHQ 18 (65)
T ss_dssp HHHHHHHHHTTCCH
T ss_pred hHHHHHHHHhhhhH
Confidence 45899999999863
No 7
>d1iyjb2 a.171.1.1 (B:2761-2897) BRCA2 tower domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.10 E-value=76 Score=26.01 Aligned_cols=42 Identities=21% Similarity=0.239 Sum_probs=12.1
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHH
Q 013603 215 PNYGFSFRCDERAEKRREFYSKLEEKIHAKEVEKSTLQAKSKET 258 (439)
Q Consensus 215 ~~s~F~frsDERAeKRKEFy~KLEEK~~AkEaEK~qlQAKsKEE 258 (439)
+..+|.||+ +|+|.|.- -..=+-+....|..-.++|+..+.+
T Consensus 5 s~g~~VfRs-eR~E~kea-~~~~~~q~k~lE~L~skiQ~e~e~~ 46 (137)
T d1iyjb2 5 VSGSYIFRN-EREEEKEA-LRFAEAQQKKLEALFTKVHTELKEH 46 (137)
T ss_dssp SSSSEEEEC-HHHHHHHH-HCC----------------------
T ss_pred CCCCeeeec-hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999 57776632 1122333344455555555544433
No 8
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.04 E-value=4.1e+02 Score=18.59 Aligned_cols=22 Identities=9% Similarity=0.131 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q 013603 232 EFYSKLEEKIHAKEVEKSTLQA 253 (439)
Q Consensus 232 EFy~KLEEK~~AkEaEK~qlQA 253 (439)
+|...|++.....+.++.+++.
T Consensus 52 ~yI~~L~~~~~~l~~~~~~l~~ 73 (88)
T d1nkpa_ 52 AYILSVQAEEQKLISEEDLLRK 73 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777776666666655543
No 9
>d1gvea_ c.1.7.1 (A:) Aflatoxin aldehyde reductase (akr7a1) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.75 E-value=90 Score=26.45 Aligned_cols=23 Identities=17% Similarity=0.452 Sum_probs=16.9
Q ss_pred HHHHHHHHHhccccCCCCCCcCC
Q 013603 260 EAEIKMLRKSLNFKATPMPTFYQ 282 (439)
Q Consensus 260 EaEIKqLRKSLvFKAtPmPsFYq 282 (439)
+++|++|.+-+....+|.|++|+
T Consensus 302 ~e~l~~i~~~~~~~~~~~p~~~~ 324 (324)
T d1gvea_ 302 PAVVDAFDQAWNLVAHECPNYFR 324 (324)
T ss_dssp HHHHHHHHHHHHHHGGGCCCSCC
T ss_pred HHHHHHHHHHHHhCCCCCCcccC
Confidence 45667777755666789999996
No 10
>d1t11a1 a.223.1.1 (A:248-376) Trigger factor, C-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=5.48 E-value=2.2e+02 Score=20.85 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 013603 244 KEVEKSTLQAKSKETQEAEIKMLRK 268 (439)
Q Consensus 244 kEaEK~qlQAKsKEEeEaEIKqLRK 268 (439)
.+..|..+....++..+..++..++
T Consensus 16 leelk~~ik~~l~~~~~~~~~~~~~ 40 (129)
T d1t11a1 16 VDALKAEVRKNMERELKQAIKARIK 40 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444333333333333333
Done!