Query 013605
Match_columns 439
No_of_seqs 452 out of 3452
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 05:32:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013605.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013605hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 1E-132 3E-137 1012.8 22.9 409 4-422 17-437 (506)
2 COG2226 UbiE Methylase involve 99.7 3.3E-16 7.1E-21 149.9 11.7 112 90-204 41-156 (238)
3 PRK11088 rrmA 23S rRNA methylt 99.6 3.7E-15 8E-20 146.3 14.8 159 13-207 19-184 (272)
4 PF01209 Ubie_methyltran: ubiE 99.6 1.4E-15 3E-20 146.1 9.9 111 91-204 38-153 (233)
5 PF08241 Methyltransf_11: Meth 99.6 3E-15 6.6E-20 121.4 7.8 90 107-202 1-95 (95)
6 COG2227 UbiG 2-polyprenyl-3-me 99.6 7.4E-15 1.6E-19 138.9 10.7 153 48-209 10-166 (243)
7 PLN02233 ubiquinone biosynthes 99.5 7.8E-14 1.7E-18 136.3 13.4 102 103-205 74-183 (261)
8 PRK10258 biotin biosynthesis p 99.5 1.5E-13 3.3E-18 133.0 14.7 114 86-207 28-143 (251)
9 PLN02396 hexaprenyldihydroxybe 99.5 1.9E-13 4.2E-18 137.1 15.1 104 102-207 131-238 (322)
10 PLN02244 tocopherol O-methyltr 99.5 1.6E-13 3.4E-18 139.1 13.6 120 84-205 97-224 (340)
11 PTZ00098 phosphoethanolamine N 99.5 9E-14 2E-18 136.0 10.5 128 74-205 26-157 (263)
12 PRK11207 tellurite resistance 99.4 6.2E-13 1.4E-17 124.5 12.1 98 104-203 32-133 (197)
13 TIGR02752 MenG_heptapren 2-hep 99.4 1.5E-12 3.2E-17 124.3 13.7 113 90-205 35-152 (231)
14 TIGR00477 tehB tellurite resis 99.4 1.1E-12 2.3E-17 122.8 11.9 98 104-203 32-132 (195)
15 PRK14103 trans-aconitate 2-met 99.4 8.4E-13 1.8E-17 128.3 11.2 106 89-205 18-127 (255)
16 PF13489 Methyltransf_23: Meth 99.4 4.7E-13 1E-17 119.4 8.1 107 89-207 10-118 (161)
17 PF12847 Methyltransf_18: Meth 99.4 1.2E-12 2.5E-17 110.3 9.6 101 103-204 2-111 (112)
18 PF02353 CMAS: Mycolic acid cy 99.4 1.5E-12 3.3E-17 127.9 11.2 123 74-204 36-166 (273)
19 PRK11036 putative S-adenosyl-L 99.4 1.7E-12 3.8E-17 126.1 10.9 103 102-206 44-151 (255)
20 PRK01683 trans-aconitate 2-met 99.4 2.9E-12 6.3E-17 124.5 12.3 108 89-205 20-131 (258)
21 KOG1540 Ubiquinone biosynthesi 99.4 1.5E-12 3.3E-17 123.5 9.9 105 99-205 97-215 (296)
22 PRK15068 tRNA mo(5)U34 methylt 99.4 3.2E-12 7E-17 128.5 12.5 111 90-204 112-226 (322)
23 PRK05785 hypothetical protein; 99.4 3.9E-12 8.5E-17 121.7 11.8 87 103-198 52-141 (226)
24 PRK15451 tRNA cmo(5)U34 methyl 99.4 2.3E-12 5.1E-17 124.8 9.9 121 82-204 36-164 (247)
25 PF13847 Methyltransf_31: Meth 99.4 3.7E-12 8.1E-17 113.9 9.9 101 103-206 4-112 (152)
26 PF03848 TehB: Tellurite resis 99.3 8.5E-12 1.8E-16 116.0 12.2 109 92-204 22-133 (192)
27 COG4106 Tam Trans-aconitate me 99.3 5.8E-12 1.2E-16 117.0 10.6 190 91-307 21-214 (257)
28 PLN02336 phosphoethanolamine N 99.3 1.1E-11 2.3E-16 131.1 14.0 112 90-205 256-370 (475)
29 TIGR00452 methyltransferase, p 99.3 1.1E-11 2.3E-16 124.0 13.0 109 90-204 111-225 (314)
30 PRK08317 hypothetical protein; 99.3 1.6E-11 3.4E-16 116.6 13.3 117 86-206 5-126 (241)
31 TIGR02072 BioC biotin biosynth 99.3 7.3E-12 1.6E-16 119.1 10.9 99 103-207 35-138 (240)
32 PF08242 Methyltransf_12: Meth 99.3 6.3E-13 1.4E-17 110.0 2.6 93 107-200 1-99 (99)
33 PRK00107 gidB 16S rRNA methylt 99.3 1.1E-10 2.3E-15 108.6 17.5 97 103-206 46-147 (187)
34 TIGR00740 methyltransferase, p 99.3 1.3E-11 2.9E-16 118.7 11.7 102 102-205 53-162 (239)
35 PRK12335 tellurite resistance 99.3 1.5E-11 3.3E-16 121.7 12.0 97 105-203 123-222 (287)
36 TIGR03840 TMPT_Se_Te thiopurin 99.3 1.3E-11 2.7E-16 117.2 10.8 102 103-204 35-152 (213)
37 COG2230 Cfa Cyclopropane fatty 99.3 1.6E-11 3.4E-16 120.0 11.1 125 74-204 46-176 (283)
38 KOG4300 Predicted methyltransf 99.3 1.1E-11 2.4E-16 114.3 9.3 100 105-205 79-183 (252)
39 PF07021 MetW: Methionine bios 99.3 1.3E-11 2.8E-16 113.7 9.8 107 90-209 5-114 (193)
40 PRK11873 arsM arsenite S-adeno 99.3 2.1E-11 4.6E-16 119.5 11.6 102 102-205 77-184 (272)
41 PF13649 Methyltransf_25: Meth 99.3 3.1E-12 6.8E-17 106.5 4.9 92 106-198 1-101 (101)
42 PLN02490 MPBQ/MSBQ methyltrans 99.3 3E-11 6.4E-16 121.9 11.9 115 86-205 98-216 (340)
43 KOG1270 Methyltransferases [Co 99.3 6.9E-12 1.5E-16 119.7 6.5 136 62-209 47-200 (282)
44 TIGR03587 Pse_Me-ase pseudamin 99.3 4.2E-11 9.1E-16 112.9 11.6 94 103-204 44-142 (204)
45 PRK00121 trmB tRNA (guanine-N( 99.2 9.3E-11 2E-15 110.3 11.7 102 103-205 41-157 (202)
46 TIGR02469 CbiT precorrin-6Y C5 99.2 3E-10 6.6E-15 96.8 13.1 111 88-204 7-122 (124)
47 PF03141 Methyltransf_29: Puta 99.2 1.7E-10 3.7E-15 119.3 13.5 184 22-243 294-488 (506)
48 PRK06922 hypothetical protein; 99.2 6.8E-11 1.5E-15 126.7 10.6 102 103-205 419-538 (677)
49 PRK13255 thiopurine S-methyltr 99.2 8.7E-11 1.9E-15 111.8 10.2 95 104-202 39-153 (218)
50 TIGR00406 prmA ribosomal prote 99.2 3E-10 6.4E-15 112.6 14.1 122 77-205 134-260 (288)
51 PRK11188 rrmJ 23S rRNA methylt 99.2 2.7E-10 5.8E-15 107.8 12.6 132 61-205 10-166 (209)
52 PRK11705 cyclopropane fatty ac 99.2 1.8E-10 4E-15 118.5 11.7 110 86-205 153-268 (383)
53 smart00828 PKS_MT Methyltransf 99.2 1.4E-10 3E-15 110.2 9.7 98 105-205 2-105 (224)
54 PLN02336 phosphoethanolamine N 99.1 1.8E-10 3.9E-15 121.8 11.4 112 90-205 27-143 (475)
55 TIGR02021 BchM-ChlM magnesium 99.1 2.8E-10 6.1E-15 108.0 11.3 116 84-203 37-157 (219)
56 TIGR00091 tRNA (guanine-N(7)-) 99.1 2.7E-10 5.8E-15 106.4 10.5 100 104-205 18-133 (194)
57 PRK13944 protein-L-isoaspartat 99.1 7.6E-10 1.6E-14 104.3 12.8 110 86-205 58-174 (205)
58 COG2264 PrmA Ribosomal protein 99.1 2.1E-10 4.6E-15 112.9 9.3 122 78-205 138-264 (300)
59 PF05401 NodS: Nodulation prot 99.1 3E-10 6.5E-15 105.0 9.7 99 101-205 42-147 (201)
60 TIGR01934 MenG_MenH_UbiE ubiqu 99.1 7.5E-10 1.6E-14 104.2 12.7 113 88-205 27-144 (223)
61 PRK00517 prmA ribosomal protei 99.1 1.2E-09 2.5E-14 106.2 14.1 118 77-205 94-214 (250)
62 smart00138 MeTrc Methyltransfe 99.1 2.7E-10 5.9E-15 111.5 9.6 103 102-204 99-242 (264)
63 PRK00216 ubiE ubiquinone/menaq 99.1 9.3E-10 2E-14 104.7 12.9 115 88-205 39-159 (239)
64 TIGR00138 gidB 16S rRNA methyl 99.1 8.8E-10 1.9E-14 102.0 12.3 96 103-205 43-143 (181)
65 PRK06202 hypothetical protein; 99.1 6.9E-10 1.5E-14 106.3 11.9 96 102-204 60-166 (232)
66 PRK05134 bifunctional 3-demeth 99.1 1E-09 2.2E-14 104.9 13.1 115 88-206 36-153 (233)
67 PF05175 MTS: Methyltransferas 99.1 1.5E-09 3.2E-14 99.3 13.3 114 88-205 19-141 (170)
68 PF06325 PrmA: Ribosomal prote 99.1 2.8E-10 6E-15 112.8 9.1 123 76-205 135-260 (295)
69 PF08003 Methyltransf_9: Prote 99.1 8.6E-10 1.9E-14 108.2 12.3 111 90-204 105-219 (315)
70 PRK14121 tRNA (guanine-N(7)-)- 99.1 8.2E-10 1.8E-14 112.8 12.4 100 104-205 124-236 (390)
71 PRK09489 rsmC 16S ribosomal RN 99.1 2.2E-09 4.7E-14 108.9 15.2 144 88-254 184-335 (342)
72 COG2813 RsmC 16S RNA G1207 met 99.1 3.1E-09 6.6E-14 104.4 15.4 163 69-253 126-297 (300)
73 PLN02585 magnesium protoporphy 99.1 1.2E-09 2.7E-14 109.3 13.0 117 84-205 125-250 (315)
74 PRK13942 protein-L-isoaspartat 99.1 1.2E-09 2.6E-14 103.5 12.1 109 86-204 62-176 (212)
75 TIGR00537 hemK_rel_arch HemK-r 99.1 1.5E-09 3.2E-14 99.9 12.1 99 104-205 21-141 (179)
76 PRK08287 cobalt-precorrin-6Y C 99.1 5.3E-09 1.1E-13 96.9 15.9 111 85-204 16-131 (187)
77 PRK15001 SAM-dependent 23S rib 99.1 1.5E-09 3.3E-14 111.1 13.3 129 72-204 199-340 (378)
78 TIGR00080 pimt protein-L-isoas 99.0 2.1E-09 4.6E-14 101.9 12.6 108 87-204 64-177 (215)
79 PRK13256 thiopurine S-methyltr 99.0 2.4E-09 5.3E-14 102.1 12.9 102 103-204 44-163 (226)
80 KOG1271 Methyltransferases [Ge 99.0 2.4E-09 5.3E-14 97.2 11.7 127 80-207 42-184 (227)
81 PRK07580 Mg-protoporphyrin IX 99.0 1.8E-09 3.8E-14 102.7 11.6 112 86-201 46-163 (230)
82 TIGR01177 conserved hypothetic 99.0 4.4E-09 9.5E-14 106.2 13.9 117 88-207 170-297 (329)
83 TIGR01983 UbiG ubiquinone bios 99.0 2.2E-09 4.8E-14 101.7 10.4 102 103-206 46-151 (224)
84 TIGR03534 RF_mod_PrmC protein- 99.0 1.2E-08 2.5E-13 98.3 15.5 117 84-205 72-218 (251)
85 PRK14967 putative methyltransf 99.0 1E-08 2.2E-13 97.8 14.4 101 103-205 37-160 (223)
86 PLN03075 nicotianamine synthas 99.0 3.5E-09 7.6E-14 104.6 11.3 102 102-204 123-233 (296)
87 PRK04266 fibrillarin; Provisio 99.0 6.3E-09 1.4E-13 99.6 12.0 103 95-205 67-177 (226)
88 KOG1541 Predicted protein carb 99.0 2.6E-09 5.7E-14 99.6 9.0 114 86-205 34-161 (270)
89 PF03291 Pox_MCEL: mRNA cappin 99.0 3.7E-09 8E-14 106.6 10.9 106 102-207 62-189 (331)
90 PF13659 Methyltransf_26: Meth 98.9 1.3E-09 2.9E-14 92.4 6.4 101 104-205 2-116 (117)
91 KOG3010 Methyltransferase [Gen 98.9 2.3E-09 5.1E-14 101.3 7.7 92 104-203 35-136 (261)
92 TIGR02716 C20_methyl_CrtF C-20 98.9 1.1E-08 2.3E-13 102.2 12.8 110 90-205 139-255 (306)
93 PRK14968 putative methyltransf 98.9 2.4E-08 5.3E-13 91.6 14.0 101 103-205 24-149 (188)
94 TIGR03438 probable methyltrans 98.9 8.4E-09 1.8E-13 102.9 11.6 103 103-205 64-178 (301)
95 PRK00312 pcm protein-L-isoaspa 98.9 1.2E-08 2.6E-13 96.3 12.1 110 86-205 64-176 (212)
96 PRK00377 cbiT cobalt-precorrin 98.9 3.1E-08 6.8E-13 92.7 14.8 99 102-205 40-146 (198)
97 TIGR02081 metW methionine bios 98.9 9.6E-09 2.1E-13 95.8 10.5 101 90-205 5-110 (194)
98 cd02440 AdoMet_MTases S-adenos 98.9 8E-09 1.7E-13 83.1 8.8 99 105-203 1-103 (107)
99 PRK07402 precorrin-6B methylas 98.9 5.6E-08 1.2E-12 90.7 15.2 112 86-205 26-143 (196)
100 COG4976 Predicted methyltransf 98.9 1.5E-09 3.3E-14 101.8 3.7 99 101-205 124-226 (287)
101 COG4123 Predicted O-methyltran 98.8 3.7E-08 8E-13 94.8 12.8 125 79-207 25-173 (248)
102 KOG1975 mRNA cap methyltransfe 98.8 8.6E-09 1.9E-13 101.0 7.5 106 102-207 117-240 (389)
103 PTZ00146 fibrillarin; Provisio 98.8 2.5E-08 5.5E-13 98.2 10.8 98 102-204 132-237 (293)
104 PF05219 DREV: DREV methyltran 98.8 3.4E-08 7.5E-13 95.0 11.2 154 74-237 64-224 (265)
105 TIGR00438 rrmJ cell division p 98.8 5.5E-08 1.2E-12 90.2 12.3 92 103-205 33-147 (188)
106 PRK09328 N5-glutamine S-adenos 98.8 1.1E-07 2.3E-12 93.1 14.7 116 86-204 94-238 (275)
107 PRK14966 unknown domain/N5-glu 98.8 1.6E-07 3.5E-12 96.8 16.4 115 86-205 239-382 (423)
108 TIGR03533 L3_gln_methyl protei 98.8 3.7E-07 7.9E-12 90.5 17.4 100 104-205 123-252 (284)
109 TIGR00536 hemK_fam HemK family 98.8 2.1E-07 4.6E-12 92.1 15.6 117 86-205 99-245 (284)
110 PLN02232 ubiquinone biosynthes 98.8 2.2E-08 4.7E-13 90.8 7.6 78 127-205 2-82 (160)
111 KOG2940 Predicted methyltransf 98.7 6.7E-09 1.5E-13 97.4 4.1 100 103-205 73-175 (325)
112 KOG2361 Predicted methyltransf 98.7 1.7E-08 3.8E-13 95.5 6.8 118 83-205 52-184 (264)
113 PRK13943 protein-L-isoaspartat 98.7 9.6E-08 2.1E-12 96.1 12.3 108 87-204 67-180 (322)
114 PF01135 PCMT: Protein-L-isoas 98.7 4.4E-08 9.5E-13 92.7 8.9 111 85-205 57-173 (209)
115 PF05148 Methyltransf_8: Hypot 98.7 4.6E-08 1E-12 91.3 8.1 98 90-205 61-159 (219)
116 smart00650 rADc Ribosomal RNA 98.7 6.9E-08 1.5E-12 88.1 8.9 106 90-203 3-112 (169)
117 COG2518 Pcm Protein-L-isoaspar 98.7 1.7E-07 3.7E-12 87.9 11.6 108 87-205 59-170 (209)
118 PF05724 TPMT: Thiopurine S-me 98.7 2.8E-07 6E-12 87.8 12.8 95 103-202 38-153 (218)
119 PRK11805 N5-glutamine S-adenos 98.7 2.5E-07 5.4E-12 92.6 12.7 100 104-205 135-264 (307)
120 PRK00811 spermidine synthase; 98.6 1.7E-07 3.6E-12 92.8 10.9 102 102-204 76-191 (283)
121 PRK10901 16S rRNA methyltransf 98.6 3.5E-07 7.6E-12 95.7 13.4 114 91-207 235-375 (427)
122 PF05891 Methyltransf_PK: AdoM 98.6 2.4E-08 5.1E-13 93.9 4.0 98 102-204 55-161 (218)
123 PRK04457 spermidine synthase; 98.6 5.1E-07 1.1E-11 88.4 13.4 116 87-204 52-177 (262)
124 TIGR03704 PrmC_rel_meth putati 98.6 1.1E-06 2.3E-11 85.6 15.3 118 84-205 69-217 (251)
125 KOG3045 Predicted RNA methylas 98.6 1.2E-07 2.5E-12 90.6 8.0 96 90-205 169-265 (325)
126 PF06080 DUF938: Protein of un 98.6 1.3E-07 2.8E-12 88.5 7.9 116 86-207 12-144 (204)
127 COG2242 CobL Precorrin-6B meth 98.6 2E-06 4.3E-11 79.2 15.2 105 92-205 26-136 (187)
128 PRK14901 16S rRNA methyltransf 98.6 1E-06 2.2E-11 92.4 14.5 113 91-206 243-386 (434)
129 TIGR00563 rsmB ribosomal RNA s 98.6 5.9E-07 1.3E-11 94.0 12.5 115 90-207 228-371 (426)
130 PRK14904 16S rRNA methyltransf 98.6 5.2E-07 1.1E-11 94.8 12.1 103 103-207 251-380 (445)
131 TIGR00446 nop2p NOL1/NOP2/sun 98.5 1.1E-06 2.5E-11 86.0 13.6 104 103-207 72-202 (264)
132 PF02390 Methyltransf_4: Putat 98.5 2.2E-07 4.8E-12 87.0 8.2 100 105-205 20-134 (195)
133 PF00891 Methyltransf_2: O-met 98.5 7.9E-07 1.7E-11 85.6 12.2 102 91-204 91-199 (241)
134 PRK14903 16S rRNA methyltransf 98.5 5.7E-07 1.2E-11 94.1 11.3 113 92-207 229-369 (431)
135 PRK13168 rumA 23S rRNA m(5)U19 98.5 1.2E-06 2.6E-11 92.1 13.3 114 86-207 283-403 (443)
136 COG0220 Predicted S-adenosylme 98.5 9.7E-07 2.1E-11 84.5 11.2 99 105-205 51-165 (227)
137 PHA03411 putative methyltransf 98.5 8E-07 1.7E-11 86.9 10.6 95 104-204 66-183 (279)
138 PHA03412 putative methyltransf 98.5 7.3E-07 1.6E-11 85.4 10.0 93 103-202 50-160 (241)
139 COG2890 HemK Methylase of poly 98.5 1.8E-06 3.8E-11 85.4 12.7 98 105-205 113-239 (280)
140 PRK01581 speE spermidine synth 98.5 8.8E-07 1.9E-11 89.8 10.7 125 74-204 121-268 (374)
141 TIGR00417 speE spermidine synt 98.5 1.1E-06 2.3E-11 86.4 11.2 102 103-205 73-187 (270)
142 PRK01544 bifunctional N5-gluta 98.5 1.3E-06 2.8E-11 93.3 12.3 101 103-205 139-270 (506)
143 PRK14902 16S rRNA methyltransf 98.4 1.4E-06 2.9E-11 91.7 11.9 112 91-206 241-381 (444)
144 COG2519 GCD14 tRNA(1-methylade 98.4 4.7E-06 1E-10 80.0 14.2 107 91-207 85-198 (256)
145 PRK10909 rsmD 16S rRNA m(2)G96 98.4 3.5E-06 7.5E-11 79.2 12.9 119 82-205 34-160 (199)
146 PRK03522 rumB 23S rRNA methylu 98.4 2.9E-06 6.4E-11 85.2 11.9 115 86-207 159-277 (315)
147 PLN02366 spermidine synthase 98.4 2.5E-06 5.4E-11 85.4 11.2 101 103-204 92-206 (308)
148 PLN02781 Probable caffeoyl-CoA 98.4 1.8E-06 4E-11 83.1 9.6 109 86-204 57-178 (234)
149 TIGR00478 tly hemolysin TlyA f 98.3 5.7E-06 1.2E-10 79.3 12.0 99 90-204 64-171 (228)
150 PRK03612 spermidine synthase; 98.3 9.2E-06 2E-10 87.1 14.3 103 102-205 297-416 (521)
151 TIGR00479 rumA 23S rRNA (uraci 98.3 4.5E-06 9.6E-11 87.4 11.4 113 86-205 278-397 (431)
152 PRK10611 chemotaxis methyltran 98.3 2.3E-06 5E-11 84.7 8.3 102 103-204 116-262 (287)
153 KOG2899 Predicted methyltransf 98.3 2.9E-06 6.4E-11 80.6 8.5 105 101-205 57-210 (288)
154 PRK11783 rlmL 23S rRNA m(2)G24 98.3 4E-06 8.7E-11 92.9 11.0 102 103-205 539-657 (702)
155 PRK15128 23S rRNA m(5)C1962 me 98.2 5.7E-06 1.2E-10 85.6 10.5 102 103-205 221-340 (396)
156 TIGR02085 meth_trns_rumB 23S r 98.2 2.2E-05 4.8E-10 80.8 13.0 115 86-207 219-337 (374)
157 PF01739 CheR: CheR methyltran 98.1 2.2E-06 4.7E-11 80.4 4.7 119 86-204 13-175 (196)
158 PF10294 Methyltransf_16: Puta 98.1 1.1E-05 2.4E-10 74.0 9.3 120 83-205 22-157 (173)
159 PF08704 GCD14: tRNA methyltra 98.1 2.4E-05 5.2E-10 75.9 11.9 109 90-207 30-149 (247)
160 COG4122 Predicted O-methyltran 98.1 1.3E-05 2.7E-10 76.2 9.8 109 86-204 48-166 (219)
161 COG2263 Predicted RNA methylas 98.1 3.3E-05 7.1E-10 71.2 11.7 89 102-194 45-137 (198)
162 PRK01544 bifunctional N5-gluta 98.1 1.1E-05 2.4E-10 86.1 9.9 102 102-205 347-463 (506)
163 PLN02476 O-methyltransferase 98.1 1.6E-05 3.4E-10 78.3 9.8 96 104-204 120-228 (278)
164 COG1041 Predicted DNA modifica 98.1 2E-05 4.4E-10 79.1 10.6 115 86-205 183-311 (347)
165 PRK11727 23S rRNA mA1618 methy 98.1 4.2E-05 9.1E-10 76.9 12.9 97 83-179 89-202 (321)
166 COG2521 Predicted archaeal met 98.1 1.2E-05 2.7E-10 76.0 8.4 120 84-204 116-245 (287)
167 PRK14896 ksgA 16S ribosomal RN 98.1 1.4E-05 3E-10 78.1 9.2 85 86-176 15-101 (258)
168 COG0500 SmtA SAM-dependent met 98.1 2.8E-05 6.2E-10 65.3 9.9 98 106-206 52-157 (257)
169 PF01596 Methyltransf_3: O-met 98.1 1.7E-05 3.6E-10 74.9 8.7 109 86-204 34-155 (205)
170 KOG1499 Protein arginine N-met 98.0 1.6E-05 3.5E-10 79.4 8.9 97 103-201 61-164 (346)
171 PRK00274 ksgA 16S ribosomal RN 98.0 1.4E-05 2.9E-10 78.8 8.2 84 87-175 29-114 (272)
172 COG3963 Phospholipid N-methylt 98.0 2.4E-05 5.2E-10 70.6 8.5 112 86-204 34-156 (194)
173 PLN02672 methionine S-methyltr 98.0 8.5E-05 1.8E-09 85.0 14.8 102 103-205 119-279 (1082)
174 TIGR00755 ksgA dimethyladenosi 98.0 5.6E-05 1.2E-09 73.5 11.0 84 86-175 15-103 (253)
175 KOG2904 Predicted methyltransf 98.0 7.6E-05 1.6E-09 72.3 11.4 119 86-205 131-286 (328)
176 KOG1331 Predicted methyltransf 98.0 3.9E-06 8.4E-11 81.6 2.4 96 103-204 46-143 (293)
177 PF07942 N2227: N2227-like pro 97.9 0.0001 2.2E-09 72.3 11.9 156 86-246 38-242 (270)
178 PTZ00338 dimethyladenosine tra 97.9 0.0001 2.3E-09 73.3 11.3 87 86-176 22-111 (294)
179 PLN02823 spermine synthase 97.9 9.6E-05 2.1E-09 74.9 11.1 102 102-204 103-220 (336)
180 TIGR00095 RNA methyltransferas 97.8 0.00049 1.1E-08 64.1 14.0 116 86-205 34-160 (189)
181 COG1352 CheR Methylase of chem 97.8 6.3E-05 1.4E-09 73.7 8.3 103 102-204 96-241 (268)
182 KOG1269 SAM-dependent methyltr 97.8 3.9E-05 8.5E-10 78.3 6.8 98 104-203 112-214 (364)
183 KOG1661 Protein-L-isoaspartate 97.8 0.0001 2.2E-09 68.9 8.9 91 103-205 83-194 (237)
184 KOG3178 Hydroxyindole-O-methyl 97.8 6.3E-05 1.4E-09 75.4 7.9 95 103-205 178-276 (342)
185 PF01170 UPF0020: Putative RNA 97.7 0.00043 9.3E-09 63.9 12.3 116 86-204 14-151 (179)
186 PRK04338 N(2),N(2)-dimethylgua 97.7 0.00021 4.5E-09 73.8 11.2 96 104-205 59-159 (382)
187 PF12147 Methyltransf_20: Puta 97.7 0.00041 8.8E-09 68.1 12.3 106 101-207 134-252 (311)
188 PLN02589 caffeoyl-CoA O-methyl 97.7 0.00016 3.5E-09 70.1 9.4 109 85-203 67-189 (247)
189 PF11968 DUF3321: Putative met 97.7 0.00028 6.1E-09 66.5 10.5 106 86-207 33-152 (219)
190 PRK04148 hypothetical protein; 97.7 0.00043 9.3E-09 60.8 10.8 100 89-203 5-108 (134)
191 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.7 4.2E-05 9E-10 74.5 4.8 117 88-204 42-199 (256)
192 PF05185 PRMT5: PRMT5 arginine 97.7 9.3E-05 2E-09 77.8 7.6 96 103-201 187-294 (448)
193 PF01728 FtsJ: FtsJ-like methy 97.6 0.00023 4.9E-09 65.4 8.5 105 89-205 9-140 (181)
194 KOG2352 Predicted spermine/spe 97.6 0.00029 6.4E-09 73.4 10.0 99 105-204 51-161 (482)
195 PF02475 Met_10: Met-10+ like- 97.6 0.00034 7.5E-09 65.8 9.5 120 71-201 74-199 (200)
196 KOG3191 Predicted N6-DNA-methy 97.6 0.00064 1.4E-08 62.3 10.5 101 103-205 44-169 (209)
197 PRK11933 yebU rRNA (cytosine-C 97.5 0.0014 3.1E-08 69.3 14.2 104 102-207 113-245 (470)
198 KOG3987 Uncharacterized conser 97.5 0.00014 3.1E-09 67.7 5.6 132 70-211 80-216 (288)
199 TIGR02143 trmA_only tRNA (urac 97.5 0.00056 1.2E-08 69.9 10.2 113 85-207 183-314 (353)
200 PF02384 N6_Mtase: N-6 DNA Met 97.5 0.00022 4.8E-09 71.2 6.7 117 86-205 32-184 (311)
201 PF03602 Cons_hypoth95: Conser 97.4 0.00049 1.1E-08 63.8 7.7 119 83-205 23-154 (183)
202 COG0421 SpeE Spermidine syntha 97.4 0.0018 4E-08 64.0 12.1 97 102-204 76-190 (282)
203 PRK05031 tRNA (uracil-5-)-meth 97.4 0.00081 1.8E-08 69.0 9.9 112 85-206 192-322 (362)
204 COG0030 KsgA Dimethyladenosine 97.4 0.002 4.3E-08 62.8 11.5 87 86-176 16-105 (259)
205 TIGR03439 methyl_EasF probable 97.3 0.0024 5.2E-08 64.3 11.8 114 88-205 66-198 (319)
206 PF09243 Rsm22: Mitochondrial 97.3 0.0015 3.2E-08 64.5 10.1 114 86-207 19-142 (274)
207 COG0293 FtsJ 23S rRNA methylas 97.3 0.0015 3.2E-08 61.4 9.4 113 81-205 25-160 (205)
208 KOG1663 O-methyltransferase [S 97.3 0.0014 3E-08 62.3 9.0 109 86-204 62-183 (237)
209 TIGR02987 met_A_Alw26 type II 97.2 0.002 4.3E-08 69.3 10.7 75 103-177 32-123 (524)
210 KOG0820 Ribosomal RNA adenine 97.2 0.0015 3.2E-08 63.5 8.2 86 86-175 44-132 (315)
211 PF01564 Spermine_synth: Sperm 97.1 0.00094 2E-08 64.8 6.8 102 102-204 76-191 (246)
212 PF02527 GidB: rRNA small subu 97.1 0.0035 7.6E-08 58.2 10.0 93 105-204 51-148 (184)
213 PRK00536 speE spermidine synth 97.1 0.0053 1.2E-07 60.1 11.4 90 101-204 71-171 (262)
214 COG0742 N6-adenine-specific me 97.1 0.014 2.9E-07 54.2 13.2 124 81-205 22-155 (187)
215 PF08123 DOT1: Histone methyla 97.0 0.002 4.3E-08 60.9 6.9 118 80-202 22-156 (205)
216 COG1092 Predicted SAM-dependen 97.0 0.0021 4.6E-08 66.3 7.6 104 103-207 218-339 (393)
217 COG4627 Uncharacterized protei 96.9 0.00017 3.6E-09 64.4 -0.6 55 157-211 38-93 (185)
218 KOG3420 Predicted RNA methylas 96.9 0.002 4.3E-08 57.1 5.6 73 103-176 49-124 (185)
219 KOG1500 Protein arginine N-met 96.9 0.0054 1.2E-07 61.2 9.2 98 102-204 177-282 (517)
220 COG3897 Predicted methyltransf 96.8 0.0041 8.8E-08 57.8 7.6 98 102-205 79-179 (218)
221 COG2265 TrmA SAM-dependent met 96.8 0.0067 1.5E-07 63.6 10.1 115 86-207 279-399 (432)
222 PRK11760 putative 23S rRNA C24 96.8 0.017 3.7E-07 58.4 12.4 92 101-204 210-305 (357)
223 KOG2915 tRNA(1-methyladenosine 96.8 0.028 6E-07 54.8 13.2 105 90-203 95-208 (314)
224 COG0144 Sun tRNA and rRNA cyto 96.8 0.016 3.4E-07 59.4 12.1 106 101-207 155-291 (355)
225 TIGR00308 TRM1 tRNA(guanine-26 96.7 0.0069 1.5E-07 62.4 9.1 95 104-204 46-147 (374)
226 COG1189 Predicted rRNA methyla 96.6 0.053 1.1E-06 52.0 13.6 148 83-242 62-220 (245)
227 PF01269 Fibrillarin: Fibrilla 96.6 0.023 4.9E-07 54.1 11.0 112 86-204 56-178 (229)
228 PRK00050 16S rRNA m(4)C1402 me 96.6 0.0035 7.7E-08 62.4 5.9 83 88-174 7-98 (296)
229 PRK11783 rlmL 23S rRNA m(2)G24 96.5 0.022 4.8E-07 63.5 11.8 117 87-205 176-348 (702)
230 COG0116 Predicted N6-adenine-s 96.4 0.03 6.5E-07 57.4 11.3 115 88-205 179-345 (381)
231 COG2520 Predicted methyltransf 96.4 0.02 4.3E-07 58.1 9.7 116 80-205 170-290 (341)
232 PF10672 Methyltrans_SAM: S-ad 96.4 0.01 2.3E-07 58.8 7.6 103 103-206 124-240 (286)
233 PF05958 tRNA_U5-meth_tr: tRNA 96.2 0.012 2.6E-07 60.2 7.0 110 86-205 183-311 (352)
234 KOG2798 Putative trehalase [Ca 96.1 0.029 6.3E-07 55.7 9.1 157 85-245 131-336 (369)
235 KOG1709 Guanidinoacetate methy 96.1 0.026 5.6E-07 53.3 8.1 109 86-203 88-205 (271)
236 PF13679 Methyltransf_32: Meth 96.1 0.056 1.2E-06 47.7 9.9 96 101-205 24-132 (141)
237 COG0357 GidB Predicted S-adeno 96.0 0.05 1.1E-06 51.7 10.0 94 103-203 68-167 (215)
238 PF00398 RrnaAD: Ribosomal RNA 96.0 0.016 3.4E-07 56.8 6.4 101 85-196 15-123 (262)
239 PF03059 NAS: Nicotianamine sy 95.5 0.12 2.6E-06 51.0 10.8 101 103-204 121-230 (276)
240 COG5459 Predicted rRNA methyla 95.4 0.041 8.9E-07 55.4 6.9 104 103-207 114-228 (484)
241 PF09445 Methyltransf_15: RNA 95.4 0.044 9.5E-07 49.9 6.6 69 105-174 2-77 (163)
242 PF03492 Methyltransf_7: SAM d 95.2 0.071 1.5E-06 54.1 8.4 80 100-180 14-120 (334)
243 KOG3201 Uncharacterized conser 95.2 0.013 2.9E-07 52.9 2.6 102 103-207 30-143 (201)
244 KOG2187 tRNA uracil-5-methyltr 95.2 0.026 5.6E-07 59.4 4.9 73 84-159 367-442 (534)
245 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.1 0.06 1.3E-06 53.4 7.2 103 102-206 85-221 (283)
246 PLN02668 indole-3-acetate carb 95.0 0.077 1.7E-06 54.8 7.7 104 103-207 64-240 (386)
247 COG4798 Predicted methyltransf 95.0 0.069 1.5E-06 49.8 6.5 100 103-205 49-167 (238)
248 COG4076 Predicted RNA methylas 94.8 0.031 6.7E-07 51.7 3.7 91 105-202 35-133 (252)
249 PF13578 Methyltransf_24: Meth 94.6 0.0099 2.1E-07 49.4 0.2 93 107-203 1-104 (106)
250 PF05971 Methyltransf_10: Prot 94.6 0.091 2E-06 52.4 6.9 97 83-179 80-190 (299)
251 COG4262 Predicted spermidine s 94.4 0.31 6.8E-06 49.5 10.1 134 71-205 257-408 (508)
252 PF04672 Methyltransf_19: S-ad 94.4 0.12 2.5E-06 50.7 7.0 102 102-205 68-191 (267)
253 COG1889 NOP1 Fibrillarin-like 94.1 1.5 3.4E-05 41.2 13.3 114 85-204 58-180 (231)
254 PF04816 DUF633: Family of unk 93.8 0.61 1.3E-05 44.1 10.4 93 106-204 1-101 (205)
255 KOG3115 Methyltransferase-like 93.4 0.15 3.2E-06 47.9 5.4 99 105-204 63-183 (249)
256 TIGR01444 fkbM_fam methyltrans 93.3 0.17 3.7E-06 44.0 5.6 36 105-140 1-40 (143)
257 KOG1122 tRNA and rRNA cytosine 92.7 0.66 1.4E-05 48.0 9.4 107 99-207 238-374 (460)
258 PF01861 DUF43: Protein of unk 92.7 2.9 6.3E-05 40.4 13.2 98 102-203 44-148 (243)
259 COG3129 Predicted SAM-dependen 92.4 0.31 6.8E-06 46.7 6.2 109 70-178 41-165 (292)
260 PF07757 AdoMet_MTase: Predict 91.7 0.27 5.7E-06 41.6 4.3 29 103-131 59-87 (112)
261 PF06859 Bin3: Bicoid-interact 91.4 0.089 1.9E-06 44.5 1.2 40 166-205 1-45 (110)
262 COG1064 AdhP Zn-dependent alco 91.4 0.58 1.3E-05 47.5 7.2 92 102-206 166-261 (339)
263 PRK13699 putative methylase; P 91.0 0.71 1.5E-05 44.3 7.1 52 152-203 4-71 (227)
264 KOG0822 Protein kinase inhibit 90.9 1 2.3E-05 47.9 8.6 116 86-202 350-476 (649)
265 KOG4589 Cell division protein 90.9 1 2.2E-05 41.9 7.6 90 103-204 70-184 (232)
266 PRK10742 putative methyltransf 90.2 1.7 3.7E-05 42.2 8.9 86 90-177 76-175 (250)
267 COG4301 Uncharacterized conser 90.2 2.3 4.9E-05 41.3 9.5 101 103-205 79-194 (321)
268 PF07091 FmrO: Ribosomal RNA m 89.9 1.3 2.9E-05 42.9 7.8 72 103-176 106-181 (251)
269 COG0286 HsdM Type I restrictio 89.6 2.9 6.2E-05 44.8 11.0 117 86-205 172-327 (489)
270 PF06962 rRNA_methylase: Putat 89.1 1.5 3.3E-05 38.9 7.0 80 125-204 2-92 (140)
271 KOG2730 Methylase [General fun 88.7 0.83 1.8E-05 43.6 5.3 96 77-174 70-173 (263)
272 KOG1099 SAM-dependent methyltr 88.2 0.45 9.7E-06 45.6 3.2 90 103-203 42-162 (294)
273 COG2384 Predicted SAM-dependen 88.1 12 0.00025 35.9 12.5 107 88-203 6-119 (226)
274 KOG2198 tRNA cytosine-5-methyl 87.7 7.6 0.00016 39.8 11.8 105 101-207 154-299 (375)
275 KOG2793 Putative N2,N2-dimethy 87.5 4.7 0.0001 39.3 9.8 100 103-205 87-200 (248)
276 KOG1562 Spermidine synthase [A 87.4 1.1 2.4E-05 44.4 5.5 102 102-205 121-237 (337)
277 PF03269 DUF268: Caenorhabditi 87.3 0.5 1.1E-05 42.9 2.8 42 164-205 61-112 (177)
278 PF04989 CmcI: Cephalosporin h 87.2 1.4 3.1E-05 41.6 6.0 98 104-204 34-147 (206)
279 PF04445 SAM_MT: Putative SAM- 87.1 1.1 2.4E-05 43.1 5.3 88 90-177 63-162 (234)
280 KOG1596 Fibrillarin and relate 86.6 2.1 4.5E-05 41.4 6.7 97 102-205 156-262 (317)
281 PRK11524 putative methyltransf 85.9 0.69 1.5E-05 45.7 3.3 55 150-204 9-80 (284)
282 TIGR00006 S-adenosyl-methyltra 85.7 3.2 6.8E-05 41.7 7.9 85 87-174 7-100 (305)
283 cd08254 hydroxyacyl_CoA_DH 6-h 85.7 5.8 0.00013 39.1 9.9 90 103-204 166-263 (338)
284 cd08283 FDH_like_1 Glutathione 85.1 8 0.00017 39.6 10.9 97 103-205 185-307 (386)
285 PF10354 DUF2431: Domain of un 84.6 3.8 8.3E-05 37.3 7.3 96 108-204 2-125 (166)
286 COG1565 Uncharacterized conser 83.4 2.4 5.1E-05 43.4 5.8 71 67-140 44-126 (370)
287 KOG2920 Predicted methyltransf 82.6 1.5 3.1E-05 43.4 3.9 123 81-204 94-234 (282)
288 cd08230 glucose_DH Glucose deh 81.6 6.6 0.00014 39.6 8.5 94 103-205 173-270 (355)
289 PRK09880 L-idonate 5-dehydroge 81.1 7.7 0.00017 38.9 8.7 91 103-205 170-267 (343)
290 KOG2539 Mitochondrial/chloropl 81.1 2.6 5.7E-05 44.3 5.3 104 103-206 201-317 (491)
291 PRK01747 mnmC bifunctional tRN 77.1 7.5 0.00016 43.1 7.8 50 152-202 151-204 (662)
292 PF03514 GRAS: GRAS domain fam 76.2 17 0.00038 37.4 9.7 102 102-203 110-243 (374)
293 PF02636 Methyltransf_28: Puta 76.0 7.3 0.00016 37.7 6.5 37 104-141 20-68 (252)
294 TIGR02822 adh_fam_2 zinc-bindi 75.9 17 0.00036 36.4 9.3 87 102-205 165-255 (329)
295 COG1063 Tdh Threonine dehydrog 75.4 13 0.00028 37.9 8.4 89 105-205 171-270 (350)
296 cd00315 Cyt_C5_DNA_methylase C 75.0 7.2 0.00016 38.4 6.2 64 105-174 2-70 (275)
297 PF00107 ADH_zinc_N: Zinc-bind 74.8 4.6 0.0001 34.1 4.3 83 112-206 1-91 (130)
298 PRK15001 SAM-dependent 23S rib 74.7 50 0.0011 34.2 12.5 92 105-204 47-142 (378)
299 KOG1501 Arginine N-methyltrans 74.3 18 0.00038 38.1 8.8 99 42-152 13-118 (636)
300 KOG4058 Uncharacterized conser 73.7 9.1 0.0002 34.4 5.8 110 86-203 58-171 (199)
301 PHA01634 hypothetical protein 73.5 15 0.00033 32.2 7.0 30 103-132 29-61 (156)
302 cd08245 CAD Cinnamyl alcohol d 71.9 32 0.0007 33.8 10.2 90 103-204 163-256 (330)
303 PF10237 N6-adenineMlase: Prob 71.5 25 0.00055 31.9 8.4 90 103-205 26-124 (162)
304 cd08232 idonate-5-DH L-idonate 69.7 25 0.00055 34.7 8.9 91 102-204 165-262 (339)
305 cd05188 MDR Medium chain reduc 68.7 41 0.00088 31.5 9.8 92 102-205 134-233 (271)
306 PRK09424 pntA NAD(P) transhydr 67.6 33 0.00072 37.0 9.6 98 102-205 164-286 (509)
307 PF13051 DUF3912: Protein of u 66.6 1.3 2.8E-05 32.8 -0.8 10 399-408 57-66 (68)
308 TIGR00853 pts-lac PTS system, 65.5 18 0.00039 29.7 5.6 78 105-205 5-82 (95)
309 PF02005 TRM: N2,N2-dimethylgu 65.5 17 0.00036 37.7 6.7 96 104-205 51-155 (377)
310 TIGR00027 mthyl_TIGR00027 meth 65.4 93 0.002 30.4 11.6 101 104-204 83-197 (260)
311 cd08281 liver_ADH_like1 Zinc-d 65.2 35 0.00077 34.6 9.1 90 103-204 192-290 (371)
312 TIGR03451 mycoS_dep_FDH mycoth 64.8 45 0.00097 33.6 9.7 91 103-205 177-277 (358)
313 PLN02586 probable cinnamyl alc 63.6 27 0.00058 35.4 7.8 91 103-204 184-278 (360)
314 cd08234 threonine_DH_like L-th 62.9 59 0.0013 31.9 10.0 90 103-205 160-258 (334)
315 cd05564 PTS_IIB_chitobiose_lic 61.6 18 0.00038 29.7 4.9 63 138-207 18-80 (96)
316 cd00401 AdoHcyase S-adenosyl-L 60.8 45 0.00098 35.0 8.9 98 88-205 188-290 (413)
317 TIGR02825 B4_12hDH leukotriene 60.8 75 0.0016 31.3 10.3 91 103-204 139-237 (325)
318 TIGR00561 pntA NAD(P) transhyd 59.3 27 0.00059 37.6 7.1 92 103-202 164-282 (511)
319 PF11599 AviRa: RRNA methyltra 57.5 18 0.00039 34.6 4.7 116 86-204 37-214 (246)
320 PLN03154 putative allyl alcoho 57.3 85 0.0018 31.6 10.1 91 103-204 159-258 (348)
321 TIGR03366 HpnZ_proposed putati 57.3 47 0.001 32.2 8.0 90 103-204 121-218 (280)
322 PTZ00357 methyltransferase; Pr 57.2 59 0.0013 36.4 9.1 95 104-199 702-830 (1072)
323 PLN02740 Alcohol dehydrogenase 56.7 77 0.0017 32.3 9.8 90 103-204 199-300 (381)
324 COG0604 Qor NADPH:quinone redu 56.2 57 0.0012 32.9 8.6 90 103-205 143-242 (326)
325 cd08239 THR_DH_like L-threonin 56.0 66 0.0014 31.8 9.0 91 103-205 164-263 (339)
326 COG1867 TRM1 N2,N2-dimethylgua 54.2 41 0.00089 34.6 7.0 98 103-205 53-155 (380)
327 KOG3924 Putative protein methy 54.2 37 0.00081 35.2 6.7 120 81-205 173-309 (419)
328 cd08255 2-desacetyl-2-hydroxye 54.0 64 0.0014 30.7 8.3 89 103-205 98-191 (277)
329 TIGR01202 bchC 2-desacetyl-2-h 53.8 47 0.001 32.7 7.5 83 103-205 145-232 (308)
330 KOG0024 Sorbitol dehydrogenase 53.6 39 0.00084 34.3 6.6 91 102-204 169-273 (354)
331 KOG2651 rRNA adenine N-6-methy 53.5 32 0.0007 35.6 6.1 29 103-131 154-185 (476)
332 PF11899 DUF3419: Protein of u 52.3 22 0.00048 36.8 4.9 54 150-204 277-334 (380)
333 cd08237 ribitol-5-phosphate_DH 52.2 59 0.0013 32.6 8.0 88 102-204 163-256 (341)
334 KOG1393 Hydroxymethylglutaryl- 51.4 8.7 0.00019 39.5 1.7 54 349-404 111-194 (462)
335 PF11312 DUF3115: Protein of u 51.2 33 0.00071 34.6 5.7 60 150-209 177-247 (315)
336 PLN02827 Alcohol dehydrogenase 51.1 91 0.002 31.8 9.3 90 103-204 194-295 (378)
337 PF01555 N6_N4_Mtase: DNA meth 50.9 16 0.00035 33.6 3.5 44 86-132 178-223 (231)
338 cd08261 Zn_ADH7 Alcohol dehydr 50.8 82 0.0018 31.1 8.7 92 103-204 160-258 (337)
339 cd05278 FDH_like Formaldehyde 50.7 77 0.0017 31.3 8.5 90 103-204 168-267 (347)
340 PRK13699 putative methylase; P 50.2 33 0.00071 32.8 5.4 45 86-133 150-196 (227)
341 PF07629 DUF1590: Protein of u 48.6 9.9 0.00022 24.1 1.0 20 13-32 5-24 (32)
342 TIGR03201 dearomat_had 6-hydro 48.4 81 0.0018 31.6 8.3 91 103-205 167-273 (349)
343 TIGR00497 hsdM type I restrict 48.2 1.4E+02 0.0029 32.1 10.3 117 88-205 203-356 (501)
344 PF06460 NSP13: Coronavirus NS 48.0 50 0.0011 32.5 6.2 100 99-209 58-174 (299)
345 cd08293 PTGR2 Prostaglandin re 47.8 1.4E+02 0.003 29.5 9.9 90 104-204 156-254 (345)
346 TIGR02818 adh_III_F_hyde S-(hy 46.4 1.3E+02 0.0028 30.5 9.5 90 103-204 186-287 (368)
347 cd08295 double_bond_reductase_ 46.0 1.6E+02 0.0036 29.0 10.1 92 102-204 151-251 (338)
348 KOG2352 Predicted spermine/spe 45.7 64 0.0014 34.4 7.0 103 103-205 296-417 (482)
349 PLN02178 cinnamyl-alcohol dehy 44.9 69 0.0015 32.8 7.3 91 103-204 179-273 (375)
350 cd08242 MDR_like Medium chain 44.9 1.8E+02 0.004 28.2 10.1 86 103-204 156-245 (319)
351 cd08285 NADP_ADH NADP(H)-depen 44.8 1.1E+02 0.0025 30.4 8.7 90 103-204 167-266 (351)
352 cd08294 leukotriene_B4_DH_like 44.7 1.6E+02 0.0035 28.6 9.7 91 103-204 144-241 (329)
353 PRK11524 putative methyltransf 44.4 32 0.0007 33.9 4.6 45 86-133 195-241 (284)
354 PF14740 DUF4471: Domain of un 43.9 50 0.0011 32.9 5.7 66 164-242 220-285 (289)
355 KOG1227 Putative methyltransfe 43.9 16 0.00035 36.5 2.3 119 71-199 167-290 (351)
356 PF05711 TylF: Macrocin-O-meth 43.8 93 0.002 30.3 7.5 53 149-204 158-212 (248)
357 cd08300 alcohol_DH_class_III c 43.5 1.8E+02 0.0038 29.4 10.0 90 103-204 187-288 (368)
358 PRK10309 galactitol-1-phosphat 43.2 1.1E+02 0.0023 30.5 8.3 91 103-205 161-261 (347)
359 PRK10310 PTS system galactitol 42.9 50 0.0011 26.9 4.7 52 109-174 7-58 (94)
360 PRK09548 PTS system ascorbate- 42.6 83 0.0018 34.6 7.6 57 103-174 506-562 (602)
361 PF01795 Methyltransf_5: MraW 42.5 22 0.00047 35.8 3.0 78 88-172 8-99 (310)
362 KOG2671 Putative RNA methylase 42.1 30 0.00064 35.4 3.8 72 103-174 209-292 (421)
363 cd05565 PTS_IIB_lactose PTS_II 41.6 40 0.00087 28.0 4.0 67 134-207 15-81 (99)
364 cd05285 sorbitol_DH Sorbitol d 41.3 1.4E+02 0.0031 29.5 8.8 92 103-204 163-265 (343)
365 cd08298 CAD2 Cinnamyl alcohol 41.3 2.3E+02 0.005 27.6 10.2 86 104-204 169-256 (329)
366 KOG0821 Predicted ribosomal RN 41.1 1.9E+02 0.0041 28.0 8.7 47 87-135 37-86 (326)
367 PRK06701 short chain dehydroge 41.0 1.9E+02 0.0041 28.2 9.4 103 103-205 46-182 (290)
368 cd08277 liver_alcohol_DH_like 40.8 1.9E+02 0.004 29.2 9.6 91 103-205 185-287 (365)
369 cd08236 sugar_DH NAD(P)-depend 39.8 1.4E+02 0.0031 29.3 8.5 92 103-204 160-258 (343)
370 PF05206 TRM13: Methyltransfer 39.8 48 0.001 32.5 4.8 28 104-131 20-56 (259)
371 PF05430 Methyltransf_30: S-ad 39.6 14 0.0003 32.0 0.9 53 150-203 33-89 (124)
372 PF14881 Tubulin_3: Tubulin do 38.0 18 0.00039 33.4 1.5 61 321-383 44-116 (180)
373 COG0686 Ald Alanine dehydrogen 37.6 87 0.0019 31.8 6.2 94 104-203 169-267 (371)
374 COG0275 Predicted S-adenosylme 37.3 1.6E+02 0.0034 29.7 8.0 84 86-172 9-102 (314)
375 cd05281 TDH Threonine dehydrog 36.7 2.1E+02 0.0045 28.3 9.2 92 103-205 164-263 (341)
376 COG3414 SgaB Phosphotransferas 36.0 93 0.002 25.5 5.3 52 109-174 6-57 (93)
377 cd08231 MDR_TM0436_like Hypoth 35.9 3.2E+02 0.007 27.1 10.5 34 165-205 248-281 (361)
378 PRK09489 rsmC 16S ribosomal RN 35.0 2.8E+02 0.0062 28.2 9.8 90 105-206 22-114 (342)
379 PRK09590 celB cellobiose phosp 34.8 82 0.0018 26.4 4.9 78 105-205 3-82 (104)
380 COG0287 TyrA Prephenate dehydr 34.6 1.4E+02 0.003 29.6 7.2 87 105-201 5-95 (279)
381 PLN02514 cinnamyl-alcohol dehy 33.7 1.7E+02 0.0036 29.5 8.0 33 166-205 244-276 (357)
382 TIGR02819 fdhA_non_GSH formald 32.8 2.6E+02 0.0056 28.8 9.3 96 104-205 187-300 (393)
383 cd08301 alcohol_DH_plants Plan 32.8 2.7E+02 0.0059 27.9 9.4 91 103-205 188-290 (369)
384 PF00145 DNA_methylase: C-5 cy 32.1 60 0.0013 31.8 4.3 61 105-173 2-68 (335)
385 PF14314 Methyltrans_Mon: Viru 31.5 1.3E+02 0.0028 33.6 6.9 41 80-123 303-343 (675)
386 cd08278 benzyl_alcohol_DH Benz 31.1 3.2E+02 0.007 27.4 9.6 91 103-205 187-286 (365)
387 PF01555 N6_N4_Mtase: DNA meth 30.6 33 0.00073 31.5 2.1 24 184-207 36-59 (231)
388 COG3510 CmcI Cephalosporin hyd 30.6 4.6E+02 0.01 24.9 9.3 97 103-205 70-181 (237)
389 cd05283 CAD1 Cinnamyl alcohol 30.4 3.5E+02 0.0076 26.6 9.6 92 104-205 171-264 (337)
390 cd08279 Zn_ADH_class_III Class 30.3 3.7E+02 0.0081 26.8 9.9 90 103-204 183-282 (363)
391 TIGR00692 tdh L-threonine 3-de 30.3 3E+02 0.0065 27.1 9.1 93 103-205 162-262 (340)
392 cd08233 butanediol_DH_like (2R 30.0 2.6E+02 0.0057 27.7 8.6 91 103-205 173-273 (351)
393 COG5379 BtaA S-adenosylmethion 29.5 2.8E+02 0.006 28.1 8.1 99 150-254 309-413 (414)
394 TIGR00936 ahcY adenosylhomocys 29.3 2.5E+02 0.0055 29.4 8.4 98 88-205 181-283 (406)
395 COG2933 Predicted SAM-dependen 29.1 4.1E+02 0.0089 26.5 9.1 83 102-196 211-295 (358)
396 TIGR00518 alaDH alanine dehydr 28.2 89 0.0019 32.1 4.9 95 103-203 167-266 (370)
397 PF07652 Flavi_DEAD: Flaviviru 28.1 3.1E+02 0.0067 24.6 7.6 35 161-198 90-125 (148)
398 KOG1253 tRNA methyltransferase 27.9 70 0.0015 34.2 4.0 97 102-204 109-216 (525)
399 COG1255 Uncharacterized protei 27.6 2.6E+02 0.0056 24.2 6.6 77 105-196 16-96 (129)
400 PRK05396 tdh L-threonine 3-deh 27.5 3.5E+02 0.0076 26.6 9.0 91 103-205 164-264 (341)
401 PF02254 TrkA_N: TrkA-N domain 26.9 2.2E+02 0.0048 23.2 6.3 83 111-205 4-97 (116)
402 cd08263 Zn_ADH10 Alcohol dehyd 26.5 3.7E+02 0.0081 26.8 9.1 34 164-204 254-287 (367)
403 PRK05476 S-adenosyl-L-homocyst 26.3 1.6E+02 0.0035 31.0 6.4 84 103-205 212-300 (425)
404 PF11899 DUF3419: Protein of u 26.1 1.6E+02 0.0035 30.5 6.3 52 93-146 28-81 (380)
405 cd05567 PTS_IIB_mannitol PTS_I 25.5 1.5E+02 0.0033 23.4 4.8 30 142-174 24-53 (87)
406 PRK10083 putative oxidoreducta 25.1 4.9E+02 0.011 25.4 9.6 91 103-205 161-260 (339)
407 cd08265 Zn_ADH3 Alcohol dehydr 25.0 3.9E+02 0.0084 27.1 8.9 36 164-205 273-308 (384)
408 PF08351 DUF1726: Domain of un 24.6 1.1E+02 0.0024 24.9 3.9 41 164-208 9-49 (92)
409 COG1908 FrhD Coenzyme F420-red 24.6 54 0.0012 28.4 2.0 33 324-356 66-100 (132)
410 cd08243 quinone_oxidoreductase 24.3 5.1E+02 0.011 24.6 9.3 91 103-205 143-239 (320)
411 COG5379 BtaA S-adenosylmethion 24.3 1.4E+02 0.003 30.1 5.1 49 101-149 62-112 (414)
412 KOG1197 Predicted quinone oxid 24.0 2.9E+02 0.0063 27.4 7.1 97 94-203 140-244 (336)
413 TIGR00675 dcm DNA-methyltransf 23.4 1.2E+02 0.0026 30.3 4.7 62 106-173 1-66 (315)
414 COG1568 Predicted methyltransf 23.2 4.4E+02 0.0094 26.5 8.2 98 103-204 153-260 (354)
415 PRK06274 indolepyruvate oxidor 22.9 3.3E+02 0.0072 24.9 7.3 33 164-205 65-97 (197)
416 cd08240 6_hydroxyhexanoate_dh_ 22.9 3.6E+02 0.0078 26.6 8.1 90 103-204 176-274 (350)
417 KOG0023 Alcohol dehydrogenase, 22.7 1.1E+02 0.0024 31.1 4.1 95 105-208 184-283 (360)
418 PRK05198 2-dehydro-3-deoxyphos 22.2 26 0.00057 34.3 -0.4 29 333-361 139-175 (264)
419 cd08296 CAD_like Cinnamyl alco 22.1 3.5E+02 0.0076 26.6 7.8 90 103-205 164-260 (333)
420 PF07101 DUF1363: Protein of u 22.0 34 0.00074 28.3 0.3 11 106-116 6-16 (124)
421 cd08266 Zn_ADH_like1 Alcohol d 21.6 4.5E+02 0.0097 25.3 8.4 89 103-204 167-265 (342)
422 cd08289 MDR_yhfp_like Yhfp put 21.2 4.3E+02 0.0094 25.5 8.2 90 103-205 147-244 (326)
423 KOG1098 Putative SAM-dependent 21.1 1.1E+02 0.0024 33.8 3.9 30 104-133 46-80 (780)
424 PF12692 Methyltransf_17: S-ad 21.0 5.9E+02 0.013 23.1 7.9 105 88-203 17-133 (160)
425 cd08238 sorbose_phosphate_red 20.7 5.7E+02 0.012 26.2 9.3 89 103-203 176-287 (410)
426 PRK09496 trkA potassium transp 20.3 4.6E+02 0.01 27.1 8.6 81 86-173 214-304 (453)
427 PRK07502 cyclohexadienyl dehyd 20.1 3.4E+02 0.0074 26.7 7.2 86 104-202 7-98 (307)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=1.4e-132 Score=1012.79 Aligned_cols=409 Identities=61% Similarity=1.131 Sum_probs=393.2
Q ss_pred CCCCCcccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCccCCCCCCHHHHHHHHHHHhhcCCeeecCCCCCCCcc
Q 013605 4 PRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQYEGNVFRFPGGGTQFPQ 83 (439)
Q Consensus 4 ~~~~~~~~~r~cp~~~~~~~c~~p~p~~y~~p~~wp~s~d~~w~~nvp~~~l~~~k~~q~w~~~~~d~~~fp~~~~~f~~ 83 (439)
++++|+|||||||+.+++++||||+|+|||.|++||+|+|++||+|+||+.|+++|+.|+|+..+|+++.||||+++|..
T Consensus 17 ~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~~gd~~~FPgggt~F~~ 96 (506)
T PF03141_consen 17 SRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRVEGDKFRFPGGGTMFPH 96 (506)
T ss_pred CcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccceeecCCEEEeCCCCccccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhcCC--CCCCCCEEEEECCCCchHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccC
Q 013605 84 GADKYIDQLASVIPI--KNGTVRTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP 161 (439)
Q Consensus 84 g~~~~i~~l~~~l~~--~~~~~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp 161 (439)
|+.+|+++|.++++. ..+..+++||+|||+|+|+++|++++|+++.+++.|.+++++|+|.+||+++.+.+....+||
T Consensus 97 Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLP 176 (506)
T PF03141_consen 97 GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLP 176 (506)
T ss_pred CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhcccccc
Confidence 999999999999987 667789999999999999999999999999999999999999999999999999988999999
Q ss_pred CCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeCCCCccccccccCCChHHHHHHHHHHHHHHHhcceee
Q 013605 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEK 241 (439)
Q Consensus 162 ~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p~~~~~~~~~~~~~~~e~l~~~~~~l~~l~~~l~W~~ 241 (439)
|++++||+|||+.|+++|.++.+.+|-|+.|+|||||||++++|+.+ .++.+++..+|+.|++++++|||+.
T Consensus 177 fp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~--------~r~~~~~~~~~~~~~~l~~~lCW~~ 248 (506)
T PF03141_consen 177 FPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY--------QRTDEDLEEEWNAMEDLAKSLCWKK 248 (506)
T ss_pred CCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc--------ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998889999999999999999999999885 4667788999999999999999999
Q ss_pred ecccCcEEEEeccCCCccccc-ccCCCCCCCCC-CCCCCchhhhcCccccccccc----CCCCCccCCchhhccCCCCcc
Q 013605 242 KSEKGEIAVWQKKVNDESCRA-RRDDSRANFCK-SSDADDVWYKKMEGCITPYPE----VAGGELKAFPERLYAIPPRIS 315 (439)
Q Consensus 242 ~~~~~~~~Iwqkp~~~~~c~~-~~~~~~~~~c~-~~dpd~~wy~~~~~ci~~~~~----~~~~~~~~wp~rl~~~p~~~~ 315 (439)
+++.++++|||||.|| +||. ++..+.||+|+ ++|||++||++|++|||++|+ .+++.+++||+||+++|+||+
T Consensus 249 va~~~~~aIwqKp~~~-~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~~WP~RL~~~P~rl~ 327 (506)
T PF03141_consen 249 VAEKGDTAIWQKPTNN-SCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLPKWPERLNAVPPRLS 327 (506)
T ss_pred heeeCCEEEEeccCCc-hhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCCCChhhhccCchhhh
Confidence 9999999999999987 9999 67779999999 889999999999999999994 588899999999999999999
Q ss_pred CCCCCCCChhhhhhhhHHHHHHHHHHHHhhc-cCCCCCceeeeccCcCccchhhhccCCCceeeeecCCCCCCCCccccc
Q 013605 316 SGSIPGVSAESYQEDSNKWKKHVNAYKKINR-LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIY 394 (439)
Q Consensus 316 ~~~~~~~~~~~f~~d~~~w~~~v~~y~~~~~-~~~~~~~rnvmdm~a~~ggfaaal~~~~~wvmnvvp~~~~~~tl~~i~ 394 (439)
++++.|+++|+|++||++||++|++||+++. .|++++|||||||||+||||||||+++|||||||||+.++ |||||||
T Consensus 328 ~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~-ntL~vIy 406 (506)
T PF03141_consen 328 SGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGP-NTLPVIY 406 (506)
T ss_pred cCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEEEecccCCC-Ccchhhh
Confidence 9999999999999999999999999999887 8999999999999999999999999999999999999875 9999999
Q ss_pred ccccccccccccCCCchh---hhhhhheecc
Q 013605 395 ERGLIGIYHDWYKFLNFC---FSLILEVTLN 422 (439)
Q Consensus 395 ~rglig~~hdwce~fst~---~~~~~~~~~~ 422 (439)
||||||+||||||||||| |+|+|+..|-
T Consensus 407 dRGLIG~yhDWCE~fsTYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 407 DRGLIGVYHDWCEAFSTYPRTYDLLHADGLF 437 (506)
T ss_pred hcccchhccchhhccCCCCcchhheehhhhh
Confidence 999999999999999999 7999998653
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.67 E-value=3.3e-16 Score=149.86 Aligned_cols=112 Identities=21% Similarity=0.284 Sum_probs=89.8
Q ss_pred HHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCC
Q 013605 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASR 165 (439)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~ 165 (439)
+.+.+.+... ++.+|||||||||.++..+++. .++++|+|+.|+..+..+........+.+.++|++.|||+|+
T Consensus 41 ~~~i~~~~~~--~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~ 118 (238)
T COG2226 41 RALISLLGIK--PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDN 118 (238)
T ss_pred HHHHHhhCCC--CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCC
Confidence 4555555433 4559999999999999999986 389999988777655544333222237889999999999999
Q ss_pred CccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 166 sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
+||+|.+++.+.++ ++...+|+|+.|||||||.+++..
T Consensus 119 sFD~vt~~fglrnv-~d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 119 SFDAVTISFGLRNV-TDIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred ccCEEEeeehhhcC-CCHHHHHHHHHHhhcCCeEEEEEE
Confidence 99999999988555 488999999999999999988865
No 3
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.63 E-value=3.7e-15 Score=146.35 Aligned_cols=159 Identities=21% Similarity=0.362 Sum_probs=114.7
Q ss_pred cCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCccCCCCCCHHHHHHHHHHHhhcCCeeecCCCCCCCcchHHHHHHHH
Q 013605 13 RHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQYEGNVFRFPGGGTQFPQGADKYIDQL 92 (439)
Q Consensus 13 r~cp~~~~~~~c~~p~p~~y~~p~~wp~s~d~~w~~nvp~~~l~~~k~~q~w~~~~~d~~~fp~~~~~f~~g~~~~i~~l 92 (439)
=+|+ ..||++.+..||...++-...+ +..+.+...+..+++.++.. + .|..-.+...+.+
T Consensus 19 ~~C~----~~h~fd~a~~Gy~~ll~~~~~~-----~~~~~d~~~~~~ar~~fl~~-g----------~y~~l~~~i~~~l 78 (272)
T PRK11088 19 WICP----QNHQFDCAKEGYVNLLPVQHKR-----SKDPGDNKEMMQARRAFLDA-G----------HYQPLRDAVANLL 78 (272)
T ss_pred EEcC----CCCCCccccCceEEeccccccC-----CCCCCcCHHHHHHHHHHHHC-C----------ChHHHHHHHHHHH
Confidence 4674 3799999999999988754444 34456777788888777661 1 1222334444444
Q ss_pred HhhcCCCCCCCCEEEEECCCCchHHHHHhhC-------CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCC
Q 013605 93 ASVIPIKNGTVRTALDTGCGVASWGAYLWSR-------NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASR 165 (439)
Q Consensus 93 ~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~-------~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~ 165 (439)
.+.+. ....+|||+|||+|.++..+++. .++++|+|+ .+++.|.++...+.+.++|+..+|++++
T Consensus 79 ~~~l~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~-----~~l~~A~~~~~~~~~~~~d~~~lp~~~~ 150 (272)
T PRK11088 79 AERLD---EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISK-----VAIKYAAKRYPQVTFCVASSHRLPFADQ 150 (272)
T ss_pred HHhcC---CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCH-----HHHHHHHHhCCCCeEEEeecccCCCcCC
Confidence 44443 22347999999999999988764 256676655 5556666666678888999999999999
Q ss_pred CccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 166 sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
+||+|++..+ ...++|+.|+|||||++++..+..
T Consensus 151 sfD~I~~~~~--------~~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 151 SLDAIIRIYA--------PCKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred ceeEEEEecC--------CCCHHHHHhhccCCCEEEEEeCCC
Confidence 9999998653 124689999999999999988755
No 4
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.62 E-value=1.4e-15 Score=146.08 Aligned_cols=111 Identities=23% Similarity=0.349 Sum_probs=79.7
Q ss_pred HHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCC
Q 013605 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASR 165 (439)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~ 165 (439)
.+.+.+.... +.+|||+|||+|.++..++++ .|+++|+|+.|+..+..+........+.+.++|++.+|++++
T Consensus 38 ~~~~~~~~~~--g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~ 115 (233)
T PF01209_consen 38 KLIKLLGLRP--GDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDN 115 (233)
T ss_dssp HHHHHHT--S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT
T ss_pred HHHhccCCCC--CCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCC
Confidence 4445443333 449999999999999999875 388999999888776665554434478899999999999999
Q ss_pred CccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 166 sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
+||+|+|++.++.+. +...+++|+.|+|||||.+++..
T Consensus 116 sfD~v~~~fglrn~~-d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 116 SFDAVTCSFGLRNFP-DRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp -EEEEEEES-GGG-S-SHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceeEEEHHhhHHhhC-CHHHHHHHHHHHcCCCeEEEEee
Confidence 999999999886654 78999999999999999999865
No 5
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.59 E-value=3e-15 Score=121.38 Aligned_cols=90 Identities=26% Similarity=0.424 Sum_probs=72.2
Q ss_pred EEECCCCchHHHHHhhC-C--cEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccccCCCCCCccEEEecccccccCC
Q 013605 107 LDTGCGVASWGAYLWSR-N--VIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGA 181 (439)
Q Consensus 107 LDIGCG~G~~~~~La~~-~--v~~vdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~~~ 181 (439)
||+|||+|..+..|+++ + ++++|+++ .+++.++++.. ...+..++...+|+++++||+|++..+++++ +
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~-----~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISE-----EMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-E 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-H-----HHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-S
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCH-----HHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-c
Confidence 89999999999999998 4 66666655 55566666543 2448888999999999999999999998777 6
Q ss_pred ChHHHHHHHHHcCCCCeEEEE
Q 013605 182 NDGRYMIEVDRVLRPGGYWVL 202 (439)
Q Consensus 182 d~~~~L~ei~RvLkPGG~lii 202 (439)
+...+++|+.|+|||||+++|
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 779999999999999999986
No 6
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.58 E-value=7.4e-15 Score=138.87 Aligned_cols=153 Identities=22% Similarity=0.298 Sum_probs=110.3
Q ss_pred cCCCCCCHH-HHHHHHHHHhhcCCeeecCCCCCCCcchHHHHHHHHHhh-cCCCCCCCCEEEEECCCCchHHHHHhhCC-
Q 013605 48 ANAPYKSLT-VEKAIQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASV-IPIKNGTVRTALDTGCGVASWGAYLWSRN- 124 (439)
Q Consensus 48 ~nvp~~~l~-~~k~~q~w~~~~~d~~~fp~~~~~f~~g~~~~i~~l~~~-l~~~~~~~~~VLDIGCG~G~~~~~La~~~- 124 (439)
.|++..++. .....+.||+.+++.-... .+-+....|+...+.. +. -.+.+|||||||.|.++..|++.|
T Consensus 10 ~~id~~e~~~F~~la~~wwd~~g~f~~LH----~~N~~rl~~i~~~~~~~~~---l~g~~vLDvGCGgG~Lse~mAr~Ga 82 (243)
T COG2227 10 QNVDYKELDKFEALASRWWDPEGEFKPLH----KINPLRLDYIREVARLRFD---LPGLRVLDVGCGGGILSEPLARLGA 82 (243)
T ss_pred ccCCHHHHHHHHHHHhhhcCCCCceeeee----eeccchhhhhhhhhhcccC---CCCCeEEEecCCccHhhHHHHHCCC
Confidence 456555554 3345778998555433321 1112223333333221 11 234589999999999999999986
Q ss_pred -cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEE
Q 013605 125 -VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (439)
Q Consensus 125 -v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis 203 (439)
|+++|+++..+..++. .|.+.++.+.+....++++-...++||+|+|..+++|++ ++..+++.+.+.+||||.++++
T Consensus 83 ~VtgiD~se~~I~~Ak~-ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~-dp~~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 83 SVTGIDASEKPIEVAKL-HALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP-DPESFLRACAKLVKPGGILFLS 160 (243)
T ss_pred eeEEecCChHHHHHHHH-hhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC-CHHHHHHHHHHHcCCCcEEEEe
Confidence 8888888876655554 677778877787778888877778999999999999986 8899999999999999999999
Q ss_pred eCCCCc
Q 013605 204 GPPINW 209 (439)
Q Consensus 204 ~p~~~~ 209 (439)
++..++
T Consensus 161 Tinrt~ 166 (243)
T COG2227 161 TINRTL 166 (243)
T ss_pred ccccCH
Confidence 876544
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.53 E-value=7.8e-14 Score=136.27 Aligned_cols=102 Identities=20% Similarity=0.195 Sum_probs=82.6
Q ss_pred CCEEEEECCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHH--Hc-CCCeEEEEecccccCCCCCCccEEEecc
Q 013605 103 VRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFAL--ER-GVPAVIGVLGTIKMPYASRAFDMAHCSR 174 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~a~i~~a~--e~-~~~~~~~~~d~~~lp~~d~sFDlV~~~~ 174 (439)
+.+|||+|||+|.++..+++. .++++|+|+.|+..+..+... .. ...+.+.++|+..+|+++++||+|+++.
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 153 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGY 153 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEec
Confidence 458999999999999888764 489999998777655433211 11 2346788899999999999999999999
Q ss_pred cccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 175 CLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 175 ~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
+++++ +++..+++|+.|+|||||++++.+.
T Consensus 154 ~l~~~-~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 154 GLRNV-VDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred ccccC-CCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 88666 4789999999999999999999864
No 8
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.52 E-value=1.5e-13 Score=132.96 Aligned_cols=114 Identities=25% Similarity=0.408 Sum_probs=89.2
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCC
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA 163 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~--v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~ 163 (439)
....+.+.+.+... ...+|||+|||+|.++..++..+ ++++|+++ .+++.++++.....+.++|+..+|++
T Consensus 28 ~~~a~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~-----~~l~~a~~~~~~~~~~~~d~~~~~~~ 100 (251)
T PRK10258 28 RQSADALLAMLPQR--KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSP-----PMLAQARQKDAADHYLAGDIESLPLA 100 (251)
T ss_pred HHHHHHHHHhcCcc--CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCH-----HHHHHHHhhCCCCCEEEcCcccCcCC
Confidence 33445566666432 34589999999999999998764 77887776 44555665544456778899999999
Q ss_pred CCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 164 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
+++||+|+++.++ +|..++..++.++.++|+|||.++++....
T Consensus 101 ~~~fD~V~s~~~l-~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 101 TATFDLAWSNLAV-QWCGNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred CCcEEEEEECchh-hhcCCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 9999999999876 677788999999999999999999987543
No 9
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.52 E-value=1.9e-13 Score=137.07 Aligned_cols=104 Identities=17% Similarity=0.121 Sum_probs=84.1
Q ss_pred CCCEEEEECCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcC--CCeEEEEecccccCCCCCCccEEEeccccc
Q 013605 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERG--VPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (439)
Q Consensus 102 ~~~~VLDIGCG~G~~~~~La~~~--v~~vdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~ 177 (439)
.+.+|||||||+|.++..|++.+ |+++|+++.++..+... +...+ ..+.+.+++++.+++++++||+|+|..+++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~-~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLH-ADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 34589999999999999998875 88888887666554432 22222 246778888888998889999999999998
Q ss_pred ccCCChHHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 178 PWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 178 ~~~~d~~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
|+. ++..+++++.++|||||.+++++...
T Consensus 210 Hv~-d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 210 HVA-NPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred hcC-CHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 876 78999999999999999999997644
No 10
>PLN02244 tocopherol O-methyltransferase
Probab=99.51 E-value=1.6e-13 Score=139.11 Aligned_cols=120 Identities=19% Similarity=0.378 Sum_probs=93.5
Q ss_pred hHHHHHHHHHhhcCCC---CCCCCEEEEECCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEe
Q 013605 84 GADKYIDQLASVIPIK---NGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVL 155 (439)
Q Consensus 84 g~~~~i~~l~~~l~~~---~~~~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~a~i~~a~e~~~--~~~~~~~ 155 (439)
....+++.+.+.+... ...+.+|||||||+|.++..|++. .|+++|+++.++..+.. .+.+.+. .+.+.++
T Consensus 97 aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~-~~~~~g~~~~v~~~~~ 175 (340)
T PLN02244 97 AQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANA-LAAAQGLSDKVSFQVA 175 (340)
T ss_pred HHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHhcCCCCceEEEEc
Confidence 3345666666666541 133458999999999999999885 48899998866554433 3444443 4788889
Q ss_pred cccccCCCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 156 GTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 156 d~~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
|+..+|+++++||+|++..+++|+. +...+++++.|+|||||.+++++.
T Consensus 176 D~~~~~~~~~~FD~V~s~~~~~h~~-d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 176 DALNQPFEDGQFDLVWSMESGEHMP-DKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred CcccCCCCCCCccEEEECCchhccC-CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9999999999999999999988875 778999999999999999999864
No 11
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.50 E-value=9e-14 Score=135.98 Aligned_cols=128 Identities=15% Similarity=0.236 Sum_probs=94.5
Q ss_pred cCCCCCCCcchHHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCe
Q 013605 74 FPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPA 150 (439)
Q Consensus 74 fp~~~~~f~~g~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~a~i~~a~e~~~~~ 150 (439)
..-|...+..|..+..+.+.+.+...++ .+|||||||+|..+..++.. .++++|+++.++..+...... ...+
T Consensus 26 ~~~g~~~~~~gg~~~~~~~l~~l~l~~~--~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--~~~i 101 (263)
T PTZ00098 26 FIFGEDYISSGGIEATTKILSDIELNEN--SKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--KNKI 101 (263)
T ss_pred HHhCCCCCCCCchHHHHHHHHhCCCCCC--CEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--CCce
Confidence 3334455555555556677777755444 48999999999999888764 488888877555443322211 2346
Q ss_pred EEEEecccccCCCCCCccEEEecccccccCC-ChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 151 VIGVLGTIKMPYASRAFDMAHCSRCLIPWGA-NDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 151 ~~~~~d~~~lp~~d~sFDlV~~~~~l~~~~~-d~~~~L~ei~RvLkPGG~liis~p 205 (439)
.+..+|+...|+++++||+|++..+++|+.. +...+++++.++|||||++++++.
T Consensus 102 ~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 102 EFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred EEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 7778888888999999999999888878763 568999999999999999999875
No 12
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.45 E-value=6.2e-13 Score=124.52 Aligned_cols=98 Identities=19% Similarity=0.307 Sum_probs=76.0
Q ss_pred CEEEEECCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCC-eEEEEecccccCCCCCCccEEEecccccccC
Q 013605 104 RTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180 (439)
Q Consensus 104 ~~VLDIGCG~G~~~~~La~~~--v~~vdis~~dis~a~i~~a~e~~~~-~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~~ 180 (439)
.+|||+|||+|.++..|++++ |+++|+|+.++..+... +...+.. +.+.+.|...++++ ++||+|+|+.+++++.
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~ 109 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERI-KAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMFLE 109 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-HHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhhCC
Confidence 489999999999999999985 88999988766655543 3344443 66677787777664 5799999999886554
Q ss_pred CC-hHHHHHHHHHcCCCCeEEEEE
Q 013605 181 AN-DGRYMIEVDRVLRPGGYWVLS 203 (439)
Q Consensus 181 ~d-~~~~L~ei~RvLkPGG~liis 203 (439)
++ ...+++++.++|+|||++++.
T Consensus 110 ~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 110 AKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEE
Confidence 33 379999999999999996553
No 13
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.43 E-value=1.5e-12 Score=124.34 Aligned_cols=113 Identities=20% Similarity=0.292 Sum_probs=85.9
Q ss_pred HHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCC
Q 013605 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (439)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d 164 (439)
+.+.+.+....+ .+|||+|||+|.++..+++. .++++|+++.++..+...........+.+..+|+..+++++
T Consensus 35 ~~~l~~l~~~~~--~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (231)
T TIGR02752 35 KDTMKRMNVQAG--TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDD 112 (231)
T ss_pred HHHHHhcCCCCC--CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCC
Confidence 555566654433 48999999999999988864 48999998866655444333222224677888888888888
Q ss_pred CCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 165 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
++||+|++..++++ .++...+++++.++|+|||.+++..+
T Consensus 113 ~~fD~V~~~~~l~~-~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 113 NSFDYVTIGFGLRN-VPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCccEEEEeccccc-CCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 99999999987754 45778999999999999999998754
No 14
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.43 E-value=1.1e-12 Score=122.79 Aligned_cols=98 Identities=18% Similarity=0.269 Sum_probs=76.7
Q ss_pred CEEEEECCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEecccccccCC
Q 013605 104 RTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGA 181 (439)
Q Consensus 104 ~~VLDIGCG~G~~~~~La~~~--v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~~~ 181 (439)
.+|||+|||+|.++..|++++ |+++|+++.++..+.. .+.+.++++.+...+....+++ ++||+|+|+.+++++..
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~ 109 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLD-MKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFLQA 109 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHHHhCCCceeEeccchhcccc-CCCCEEEEecccccCCH
Confidence 489999999999999999885 8999998876655543 4455566666667776655654 57999999998876653
Q ss_pred C-hHHHHHHHHHcCCCCeEEEEE
Q 013605 182 N-DGRYMIEVDRVLRPGGYWVLS 203 (439)
Q Consensus 182 d-~~~~L~ei~RvLkPGG~liis 203 (439)
+ ...+++++.++|+|||++++.
T Consensus 110 ~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 110 GRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEE
Confidence 3 378999999999999996654
No 15
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.42 E-value=8.4e-13 Score=128.30 Aligned_cols=106 Identities=21% Similarity=0.259 Sum_probs=81.3
Q ss_pred HHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCC
Q 013605 89 IDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (439)
Q Consensus 89 i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d 164 (439)
...+.+.+.... +.+|||||||+|.++..|++. .++++|+|+.+ ++.|++++ +.+..+|+..++ ++
T Consensus 18 ~~~ll~~l~~~~--~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~-----~~~a~~~~--~~~~~~d~~~~~-~~ 87 (255)
T PRK14103 18 FYDLLARVGAER--ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEM-----VAAARERG--VDARTGDVRDWK-PK 87 (255)
T ss_pred HHHHHHhCCCCC--CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHH-----HHHHHhcC--CcEEEcChhhCC-CC
Confidence 345555564433 358999999999999999876 37888887644 44555554 556777887764 56
Q ss_pred CCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 165 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
++||+|+|+.++++ .+++..+++++.++|||||.+++..+
T Consensus 88 ~~fD~v~~~~~l~~-~~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 88 PDTDVVVSNAALQW-VPEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred CCceEEEEehhhhh-CCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 79999999998855 45789999999999999999999864
No 16
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.41 E-value=4.7e-13 Score=119.39 Aligned_cols=107 Identities=27% Similarity=0.506 Sum_probs=80.1
Q ss_pred HHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCC
Q 013605 89 IDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRA 166 (439)
Q Consensus 89 i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~--v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~s 166 (439)
.+.+.++.+. .....+|||||||+|.++..|++.+ ++++|+++.++.. ........+....+.++++
T Consensus 10 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 78 (161)
T PF13489_consen 10 ADLLERLLPR-LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK----------RNVVFDNFDAQDPPFPDGS 78 (161)
T ss_dssp HHHHHHHHTC-TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH----------TTSEEEEEECHTHHCHSSS
T ss_pred HHHHHHHhcc-cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh----------hhhhhhhhhhhhhhccccc
Confidence 3444444432 2334589999999999999998885 7888887754433 2334444444455567899
Q ss_pred ccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 167 FDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 167 FDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
||+|+|+.+++|.. ++..+|+++.++|||||+++++++..
T Consensus 79 fD~i~~~~~l~~~~-d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 79 FDLIICNDVLEHLP-DPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp EEEEEEESSGGGSS-HHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hhhHhhHHHHhhcc-cHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 99999999997776 78999999999999999999998754
No 17
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.40 E-value=1.2e-12 Score=110.33 Aligned_cols=101 Identities=23% Similarity=0.298 Sum_probs=76.4
Q ss_pred CCEEEEECCCCchHHHHHhh--C--CcEEEeCCccchHHHHHHHHHH-cCCCeEEEEecc-cccCCCCCCccEEEecc-c
Q 013605 103 VRTALDTGCGVASWGAYLWS--R--NVIAMSFAPRDSHEAQVQFALE-RGVPAVIGVLGT-IKMPYASRAFDMAHCSR-C 175 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~--~--~v~~vdis~~dis~a~i~~a~e-~~~~~~~~~~d~-~~lp~~d~sFDlV~~~~-~ 175 (439)
+.+|||||||+|.++..+++ . .++++|+++.++..++...... ....+.+...|+ ..... .+.||+|++.. +
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGFT 80 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSGS
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCCc
Confidence 34899999999999999999 4 4899999997776666554332 234678888888 33333 45599999998 4
Q ss_pred ccccC--CChHHHHHHHHHcCCCCeEEEEEe
Q 013605 176 LIPWG--ANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 176 l~~~~--~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
++++. ++...+++++.+.|+|||+++++.
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 44343 234789999999999999999975
No 18
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.40 E-value=1.5e-12 Score=127.87 Aligned_cols=123 Identities=24% Similarity=0.413 Sum_probs=82.6
Q ss_pred cCCCCCCCcchHHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC-CcEEEeCCccchHHHHHHHHH----HcCC
Q 013605 74 FPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-NVIAMSFAPRDSHEAQVQFAL----ERGV 148 (439)
Q Consensus 74 fp~~~~~f~~g~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~-~v~~vdis~~dis~a~i~~a~----e~~~ 148 (439)
|+.+...+.......++.+.+.+.+.++. +|||||||.|.++.+++++ |+.++.+ .+++.|.+.++ +.|+
T Consensus 36 ~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~--~vLDiGcGwG~~~~~~a~~~g~~v~gi---tlS~~Q~~~a~~~~~~~gl 110 (273)
T PF02353_consen 36 FDEGDDTLEEAQERKLDLLCEKLGLKPGD--RVLDIGCGWGGLAIYAAERYGCHVTGI---TLSEEQAEYARERIREAGL 110 (273)
T ss_dssp -SSTT--HHHHHHHHHHHHHTTTT--TT---EEEEES-TTSHHHHHHHHHH--EEEEE---ES-HHHHHHHHHHHHCSTS
T ss_pred cCCchhhHHHHHHHHHHHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHcCcEEEEE---ECCHHHHHHHHHHHHhcCC
Confidence 44444445555566777888888776655 9999999999999999998 6444444 34455555554 4455
Q ss_pred C--eEEEEecccccCCCCCCccEEEecccccccCCC-hHHHHHHHHHcCCCCeEEEEEe
Q 013605 149 P--AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAN-DGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 149 ~--~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~~~d-~~~~L~ei~RvLkPGG~liis~ 204 (439)
. +.+...|..+++. +||.|++..+++|+... ...+++++.++|||||.+++..
T Consensus 111 ~~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 111 EDRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp SSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred CCceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 4 5667777666653 89999999999998643 4899999999999999999853
No 19
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.39 E-value=1.7e-12 Score=126.13 Aligned_cols=103 Identities=20% Similarity=0.113 Sum_probs=81.2
Q ss_pred CCCEEEEECCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccccC-CCCCCccEEEecccc
Q 013605 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMP-YASRAFDMAHCSRCL 176 (439)
Q Consensus 102 ~~~~VLDIGCG~G~~~~~La~~~--v~~vdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp-~~d~sFDlV~~~~~l 176 (439)
.+.+|||+|||+|.++..|++.+ |+++|+++.++..++. .+.+.+. .+.+..+++..++ +.+++||+|+|..++
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~-~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQ-AAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 34589999999999999999985 8889998876655543 3344443 3567777876664 667899999999988
Q ss_pred cccCCChHHHHHHHHHcCCCCeEEEEEeCC
Q 013605 177 IPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (439)
Q Consensus 177 ~~~~~d~~~~L~ei~RvLkPGG~liis~p~ 206 (439)
+++ +++..+++++.++|||||++++....
T Consensus 123 ~~~-~~~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 123 EWV-ADPKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred Hhh-CCHHHHHHHHHHHcCCCeEEEEEEEC
Confidence 555 57889999999999999999987543
No 20
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.38 E-value=2.9e-12 Score=124.45 Aligned_cols=108 Identities=20% Similarity=0.327 Sum_probs=82.4
Q ss_pred HHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCC
Q 013605 89 IDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (439)
Q Consensus 89 i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d 164 (439)
.+.+.+.+.... +.+|||||||+|.++..+++. .++++|+++. +++.|+++...+.+..+|+..+. ++
T Consensus 20 ~~~ll~~~~~~~--~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~-----~i~~a~~~~~~~~~~~~d~~~~~-~~ 91 (258)
T PRK01683 20 ARDLLARVPLEN--PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPA-----MLAEARSRLPDCQFVEADIASWQ-PP 91 (258)
T ss_pred HHHHHhhCCCcC--CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHH-----HHHHHHHhCCCCeEEECchhccC-CC
Confidence 344555554333 458999999999999999875 3888888764 44555555555777778876654 45
Q ss_pred CCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 165 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
++||+|+|+.++ |+..+...+++++.++|||||.+++..+
T Consensus 92 ~~fD~v~~~~~l-~~~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 92 QALDLIFANASL-QWLPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred CCccEEEEccCh-hhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 689999999988 5556788999999999999999999864
No 21
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.38 E-value=1.5e-12 Score=123.46 Aligned_cols=105 Identities=17% Similarity=0.162 Sum_probs=86.3
Q ss_pred CCCCCCEEEEECCCCchHHHHHhhC----------CcEEEeCCccchHHHHHHHHHHcCCC----eEEEEecccccCCCC
Q 013605 99 KNGTVRTALDTGCGVASWGAYLWSR----------NVIAMSFAPRDSHEAQVQFALERGVP----AVIGVLGTIKMPYAS 164 (439)
Q Consensus 99 ~~~~~~~VLDIGCG~G~~~~~La~~----------~v~~vdis~~dis~a~i~~a~e~~~~----~~~~~~d~~~lp~~d 164 (439)
.++++.++||++||||..+..+++. .|+++|++|.++..+.. .+.+++.. ..+..+|++.|||++
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkq-Ra~~~~l~~~~~~~w~~~dAE~LpFdd 175 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQ-RAKKRPLKASSRVEWVEGDAEDLPFDD 175 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHH-HHhhcCCCcCCceEEEeCCcccCCCCC
Confidence 4455679999999999988887764 48999999988876654 44444432 677888999999999
Q ss_pred CCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 165 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
.+||+..+++.+..++ ++++.|+|++|||||||+|.+-..
T Consensus 176 ~s~D~yTiafGIRN~t-h~~k~l~EAYRVLKpGGrf~cLeF 215 (296)
T KOG1540|consen 176 DSFDAYTIAFGIRNVT-HIQKALREAYRVLKPGGRFSCLEF 215 (296)
T ss_pred CcceeEEEecceecCC-CHHHHHHHHHHhcCCCcEEEEEEc
Confidence 9999999999776665 889999999999999999998653
No 22
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.38 E-value=3.2e-12 Score=128.53 Aligned_cols=111 Identities=22% Similarity=0.217 Sum_probs=83.4
Q ss_pred HHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhCC---cEEEeCCccchHHHHHHH-HHHcCCCeEEEEecccccCCCCC
Q 013605 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQF-ALERGVPAVIGVLGTIKMPYASR 165 (439)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~---v~~vdis~~dis~a~i~~-a~e~~~~~~~~~~d~~~lp~~d~ 165 (439)
+.+...+... .+++|||||||+|.++..++..+ |+++|.|+.++....... .......+.+..++++.+|+ ++
T Consensus 112 ~~l~~~l~~l--~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~ 188 (322)
T PRK15068 112 DRVLPHLSPL--KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LK 188 (322)
T ss_pred HHHHHhhCCC--CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cC
Confidence 4445555322 34589999999999999998874 888888876554322111 11112357788888899998 78
Q ss_pred CccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 166 sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
+||+|+|..+++|. .++..+|+++.++|+|||.+++++
T Consensus 189 ~FD~V~s~~vl~H~-~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 189 AFDTVFSMGVLYHR-RSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred CcCEEEECChhhcc-CCHHHHHHHHHHhcCCCcEEEEEE
Confidence 89999999988776 478899999999999999999874
No 23
>PRK05785 hypothetical protein; Provisional
Probab=99.37 E-value=3.9e-12 Score=121.71 Aligned_cols=87 Identities=21% Similarity=0.201 Sum_probs=70.7
Q ss_pred CCEEEEECCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEeccccccc
Q 013605 103 VRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~ 179 (439)
+.+|||||||+|.++..+++. .++++|+|+.|+. .|+++. .+.+++++.+|+++++||+|+++.+++++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~-----~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l~~~ 123 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLK-----MNLVAD---DKVVGSFEALPFRDKSFDVVMSSFALHAS 123 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHH-----HHHhcc---ceEEechhhCCCCCCCEEEEEecChhhcc
Confidence 358999999999999999887 3788888775554 444432 34678889999999999999999988554
Q ss_pred CCChHHHHHHHHHcCCCCe
Q 013605 180 GANDGRYMIEVDRVLRPGG 198 (439)
Q Consensus 180 ~~d~~~~L~ei~RvLkPGG 198 (439)
+++..+++|+.|+|||.+
T Consensus 124 -~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 124 -DNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred -CCHHHHHHHHHHHhcCce
Confidence 588999999999999953
No 24
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.36 E-value=2.3e-12 Score=124.77 Aligned_cols=121 Identities=15% Similarity=0.145 Sum_probs=87.4
Q ss_pred cchHHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhh--C----CcEEEeCCccchHHHHHHHHHHcC-CCeEEEE
Q 013605 82 PQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWS--R----NVIAMSFAPRDSHEAQVQFALERG-VPAVIGV 154 (439)
Q Consensus 82 ~~g~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~--~----~v~~vdis~~dis~a~i~~a~e~~-~~~~~~~ 154 (439)
..+++...+.+..++......+.+|||||||+|..+..+++ . .++++|+|+.++..+..+...... ..+.+.+
T Consensus 36 ~p~y~~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~ 115 (247)
T PRK15451 36 VPGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIE 115 (247)
T ss_pred CCChHHHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEe
Confidence 35555555555444322223345899999999999988876 1 489999999777666654433221 2467788
Q ss_pred ecccccCCCCCCccEEEecccccccCCCh-HHHHHHHHHcCCCCeEEEEEe
Q 013605 155 LGTIKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 155 ~d~~~lp~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~liis~ 204 (439)
+++..++++ .+|+|+++.+++++.++. ..+++++.++|||||.|++++
T Consensus 116 ~d~~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 116 GDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred CChhhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 888877764 499999999887765433 689999999999999999986
No 25
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.35 E-value=3.7e-12 Score=113.92 Aligned_cols=101 Identities=22% Similarity=0.327 Sum_probs=80.3
Q ss_pred CCEEEEECCCCchHHHHHhh-C----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccccC--CCCCCccEEEecc
Q 013605 103 VRTALDTGCGVASWGAYLWS-R----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMP--YASRAFDMAHCSR 174 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~-~----~v~~vdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp--~~d~sFDlV~~~~ 174 (439)
..+|||+|||+|.++..|++ . .++++|+++.++..+.. .+.+.+. .+.+.++|+..++ ++ +.||+|++..
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~-~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKK-RAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHH-HHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhc-ccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 45899999999999999993 2 38999998876655544 3444455 4889999998877 66 8899999998
Q ss_pred cccccCCChHHHHHHHHHcCCCCeEEEEEeCC
Q 013605 175 CLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (439)
Q Consensus 175 ~l~~~~~d~~~~L~ei~RvLkPGG~liis~p~ 206 (439)
++++. .+...+++++.++|++||.+++..+.
T Consensus 82 ~l~~~-~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHF-PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGT-SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhc-cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 88444 47789999999999999999998753
No 26
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.35 E-value=8.5e-12 Score=115.96 Aligned_cols=109 Identities=20% Similarity=0.344 Sum_probs=83.2
Q ss_pred HHhhcCCCCCCCCEEEEECCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccE
Q 013605 92 LASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDM 169 (439)
Q Consensus 92 l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~--v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDl 169 (439)
+.+.++..+ +.++||+|||.|+.+.+|+++| |+++|+|+..+.. ..+.|.+.++++...+.|+....++ +.||+
T Consensus 22 v~~a~~~~~--~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~-l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~ 97 (192)
T PF03848_consen 22 VLEAVPLLK--PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEK-LQRLAEEEGLDIRTRVADLNDFDFP-EEYDF 97 (192)
T ss_dssp HHHHCTTS---SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHH-HHHHHHHTT-TEEEEE-BGCCBS-T-TTEEE
T ss_pred HHHHHhhcC--CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHH-HHHHHhhcCceeEEEEecchhcccc-CCcCE
Confidence 344444333 3489999999999999999997 8999999866654 3557888899999999998777775 67999
Q ss_pred EEecccccccCCCh-HHHHHHHHHcCCCCeEEEEEe
Q 013605 170 AHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 170 V~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~liis~ 204 (439)
|++..++.+...+. ..+++.+...++|||++++..
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 99988887776554 789999999999999998853
No 27
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.34 E-value=5.8e-12 Score=116.96 Aligned_cols=190 Identities=18% Similarity=0.269 Sum_probs=126.6
Q ss_pred HHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCC
Q 013605 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRA 166 (439)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~s 166 (439)
.+...++... .++|.|+|||+|..+..|+++ .++++|-|+ +|+..|+.+.+++.|..+|+..+. ++..
T Consensus 21 dLla~Vp~~~--~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~-----~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~ 92 (257)
T COG4106 21 DLLARVPLER--PRRVVDLGCGPGNSTELLARRWPDAVITGIDSSP-----AMLAKAAQRLPDATFEEADLRTWK-PEQP 92 (257)
T ss_pred HHHhhCCccc--cceeeecCCCCCHHHHHHHHhCCCCeEeeccCCH-----HHHHHHHHhCCCCceecccHhhcC-CCCc
Confidence 3444554433 458999999999999999998 366666655 566677788899999999987775 4678
Q ss_pred ccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeCCCCccccccccCCChHHHHHHHHHHHHHHHhcceeeecccC
Q 013605 167 FDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEKG 246 (439)
Q Consensus 167 FDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p~~~~~~~~~~~~~~~e~l~~~~~~l~~l~~~l~W~~~~~~~ 246 (439)
+|+++++.++ +|.+|-..+|..+...|.|||.+.+-.|.. +... ....|.+.++..-|.......
T Consensus 93 ~dllfaNAvl-qWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN--------~dep------sH~~mr~~A~~~p~~~~l~~~ 157 (257)
T COG4106 93 TDLLFANAVL-QWLPDHPELLPRLVSQLAPGGVLAVQMPDN--------LDEP------SHRLMRETADEAPFAQELGGR 157 (257)
T ss_pred cchhhhhhhh-hhccccHHHHHHHHHhhCCCceEEEECCCc--------cCch------hHHHHHHHHhcCchhhhhCcc
Confidence 9999999887 899888999999999999999999987744 1111 223466777766666554433
Q ss_pred cEEEEeccCCCcccccccCCCCCCCCCCCCCCchhhhcCcccccccccCCCCCccCCchhh
Q 013605 247 EIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVAGGELKAFPERL 307 (439)
Q Consensus 247 ~~~Iwqkp~~~~~c~~~~~~~~~~~c~~~dpd~~wy~~~~~ci~~~~~~~~~~~~~wp~rl 307 (439)
.. .++++-...-|..- -.+--|.-+-=...+|.+|..--.-+.++.|..+.+|=+||
T Consensus 158 ~~--~r~~v~s~a~Yy~l--La~~~~rvDiW~T~Y~h~l~~a~aIvdWvkgTgLrP~L~~L 214 (257)
T COG4106 158 GL--TRAPLPSPAAYYEL--LAPLACRVDIWHTTYYHQLPGADAIVDWVKGTGLRPYLDRL 214 (257)
T ss_pred cc--ccCCCCCHHHHHHH--hCcccceeeeeeeeccccCCCccchhhheeccccceecccc
Confidence 33 46666543444410 01123332111223456555443333367788888777766
No 28
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.34 E-value=1.1e-11 Score=131.06 Aligned_cols=112 Identities=19% Similarity=0.303 Sum_probs=86.5
Q ss_pred HHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCC
Q 013605 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRA 166 (439)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~s 166 (439)
+.+.+.+... ++.+|||||||+|..+..|+.. .++++|+|+.++..+.. .+......+.+.++|...+++++++
T Consensus 256 e~l~~~~~~~--~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~-~~~~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 256 KEFVDKLDLK--PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALE-RAIGRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHhcCCC--CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HhhcCCCceEEEEcCcccCCCCCCC
Confidence 4555555433 3458999999999999888875 48888888765544432 2222233567888888888888899
Q ss_pred ccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 167 FDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 167 FDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
||+|+|..+++|+. ++..+++++.|+|||||.+++++.
T Consensus 333 fD~I~s~~~l~h~~-d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 333 FDVIYSRDTILHIQ-DKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred EEEEEECCcccccC-CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 99999999887775 789999999999999999999875
No 29
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.33 E-value=1.1e-11 Score=124.03 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=80.1
Q ss_pred HHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhCC---cEEEeCCccchHHHHHHHHHH---cCCCeEEEEecccccCCC
Q 013605 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALE---RGVPAVIGVLGTIKMPYA 163 (439)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~---v~~vdis~~dis~a~i~~a~e---~~~~~~~~~~d~~~lp~~ 163 (439)
+.+...+... ++++|||||||+|.++..++..+ |+++|.|+.++... +.++. ....+.+...++..+|..
T Consensus 111 ~~~l~~l~~~--~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~--~~~~~~~~~~~~v~~~~~~ie~lp~~ 186 (314)
T TIGR00452 111 DRVLPHLSPL--KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQF--EAVRKLLDNDKRAILEPLGIEQLHEL 186 (314)
T ss_pred HHHHHhcCCC--CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHH--HHHHHHhccCCCeEEEECCHHHCCCC
Confidence 3444444332 34599999999999998888774 77888877655432 12222 123456667778888764
Q ss_pred CCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 164 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
.+||+|+|..+++|+. ++..+|+++.++|||||.|++.+
T Consensus 187 -~~FD~V~s~gvL~H~~-dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 187 -YAFDTVFSMGVLYHRK-SPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred -CCcCEEEEcchhhccC-CHHHHHHHHHHhcCCCCEEEEEE
Confidence 4799999999998874 78899999999999999999975
No 30
>PRK08317 hypothetical protein; Provisional
Probab=99.33 E-value=1.6e-11 Score=116.55 Aligned_cols=117 Identities=23% Similarity=0.319 Sum_probs=88.7
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccc
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM 160 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~l 160 (439)
..+.+.+.+.+.... +.+|||+|||+|.++..+++. .++++|+++..+..+... .........+...|+..+
T Consensus 5 ~~~~~~~~~~~~~~~--~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~-~~~~~~~~~~~~~d~~~~ 81 (241)
T PRK08317 5 RRYRARTFELLAVQP--GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAGLGPNVEFVRGDADGL 81 (241)
T ss_pred HHHHHHHHHHcCCCC--CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH-hhCCCCceEEEecccccC
Confidence 455566667765544 348999999999999998864 388888887544433322 112234567777888888
Q ss_pred CCCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeCC
Q 013605 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (439)
Q Consensus 161 p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p~ 206 (439)
++++++||+|++..+++++. ++..+++++.++|+|||++++..+.
T Consensus 82 ~~~~~~~D~v~~~~~~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 82 PFPDGSFDAVRSDRVLQHLE-DPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred CCCCCCceEEEEechhhccC-CHHHHHHHHHHHhcCCcEEEEEecC
Confidence 88889999999999886664 7889999999999999999998753
No 31
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.33 E-value=7.3e-12 Score=119.06 Aligned_cols=99 Identities=24% Similarity=0.314 Sum_probs=78.7
Q ss_pred CCEEEEECCCCchHHHHHhhCC----cEEEeCCccchHHHHHHHHHHcC-CCeEEEEecccccCCCCCCccEEEeccccc
Q 013605 103 VRTALDTGCGVASWGAYLWSRN----VIAMSFAPRDSHEAQVQFALERG-VPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~~----v~~vdis~~dis~a~i~~a~e~~-~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~ 177 (439)
..+|||+|||+|.++..+++.+ ++++|+++.++ +.++++. ....+..+|+..+++++++||+|+++.+++
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~-----~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGML-----AQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHH-----HHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence 3589999999999999998863 58888766443 3444432 245677888888898899999999999884
Q ss_pred ccCCChHHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 178 PWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 178 ~~~~d~~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
+..+...++.++.++|+|||.++++.+..
T Consensus 110 -~~~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 110 -WCDDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred -hccCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 44578899999999999999999987533
No 32
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.32 E-value=6.3e-13 Score=110.02 Aligned_cols=93 Identities=20% Similarity=0.290 Sum_probs=57.5
Q ss_pred EEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccC-C-CCCCccEEEecccccccC
Q 013605 107 LDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP-Y-ASRAFDMAHCSRCLIPWG 180 (439)
Q Consensus 107 LDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp-~-~d~sFDlV~~~~~l~~~~ 180 (439)
||||||+|.++..+++. .++++|+|+.++..+..++................... . ..++||+|+++.+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999999998876 48999999988855554444433333333333332222 1 23599999999999777
Q ss_pred CChHHHHHHHHHcCCCCeEE
Q 013605 181 ANDGRYMIEVDRVLRPGGYW 200 (439)
Q Consensus 181 ~d~~~~L~ei~RvLkPGG~l 200 (439)
++...+++++.++|||||.|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 68899999999999999986
No 33
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.31 E-value=1.1e-10 Score=108.61 Aligned_cols=97 Identities=18% Similarity=0.125 Sum_probs=76.1
Q ss_pred CCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccccCCCCCCccEEEeccccc
Q 013605 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~d~sFDlV~~~~~l~ 177 (439)
+.+|||+|||+|.++..++.. .|+++|+++.++..+.. .+++.+. ++.+..+++..++. +++||+|+|...
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~-~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLRE-VAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHH-HHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 458999999999999988753 48999998876655554 3444444 37788888877776 779999999642
Q ss_pred ccCCChHHHHHHHHHcCCCCeEEEEEeCC
Q 013605 178 PWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (439)
Q Consensus 178 ~~~~d~~~~L~ei~RvLkPGG~liis~p~ 206 (439)
.+...+++++.++|||||++++....
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 35578999999999999999998653
No 34
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.31 E-value=1.3e-11 Score=118.70 Aligned_cols=102 Identities=15% Similarity=0.105 Sum_probs=78.0
Q ss_pred CCCEEEEECCCCchHHHHHhhC------CcEEEeCCccchHHHHHHHHHHc-CCCeEEEEecccccCCCCCCccEEEecc
Q 013605 102 TVRTALDTGCGVASWGAYLWSR------NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIKMPYASRAFDMAHCSR 174 (439)
Q Consensus 102 ~~~~VLDIGCG~G~~~~~La~~------~v~~vdis~~dis~a~i~~a~e~-~~~~~~~~~d~~~lp~~d~sFDlV~~~~ 174 (439)
...+|||+|||+|.++..++++ .++++|+++.++..+........ ...+.+..+|+..++++ .+|+|+++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 3458999999999999888763 38899998877665554332211 23467888888888765 489999999
Q ss_pred cccccCCC-hHHHHHHHHHcCCCCeEEEEEeC
Q 013605 175 CLIPWGAN-DGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 175 ~l~~~~~d-~~~~L~ei~RvLkPGG~liis~p 205 (439)
+++++.++ ...+++++.|+|+|||.++++.+
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 88766532 37899999999999999999864
No 35
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.30 E-value=1.5e-11 Score=121.69 Aligned_cols=97 Identities=20% Similarity=0.292 Sum_probs=77.1
Q ss_pred EEEEECCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEecccccccCCC
Q 013605 105 TALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAN 182 (439)
Q Consensus 105 ~VLDIGCG~G~~~~~La~~~--v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~~~d 182 (439)
+|||+|||+|.++.+|++.+ |+++|+|+.++..+. +.+.+.++.+.+...|....++ +++||+|+++.++++...+
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~-~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~~ 200 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQ-EIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNRE 200 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHH-HHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCCHH
Confidence 79999999999999999875 889999886665443 4555666777777777766555 6789999999988666433
Q ss_pred -hHHHHHHHHHcCCCCeEEEEE
Q 013605 183 -DGRYMIEVDRVLRPGGYWVLS 203 (439)
Q Consensus 183 -~~~~L~ei~RvLkPGG~liis 203 (439)
...+++++.++|+|||++++.
T Consensus 201 ~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 201 RIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred HHHHHHHHHHHhcCCCcEEEEE
Confidence 378999999999999997764
No 36
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.30 E-value=1.3e-11 Score=117.18 Aligned_cols=102 Identities=18% Similarity=0.101 Sum_probs=76.8
Q ss_pred CCEEEEECCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHH------------HcCCCeEEEEecccccCCC-CCCc
Q 013605 103 VRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFAL------------ERGVPAVIGVLGTIKMPYA-SRAF 167 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~~--v~~vdis~~dis~a~i~~a~------------e~~~~~~~~~~d~~~lp~~-d~sF 167 (439)
+.+|||+|||.|..+.+|+++| |+++|+|+..+..++.+... .++..+.+.++|...++.. .+.|
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~f 114 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPV 114 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCc
Confidence 3489999999999999999996 88888888666543221100 0233567788888777643 4679
Q ss_pred cEEEecccccccCCCh-HHHHHHHHHcCCCCeEEEEEe
Q 013605 168 DMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 168 DlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~liis~ 204 (439)
|.|+...+++|++++. ..+++.+.++|||||++++.+
T Consensus 115 D~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 115 DAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred CEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 9999988888887655 789999999999999866653
No 37
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.29 E-value=1.6e-11 Score=119.99 Aligned_cols=125 Identities=19% Similarity=0.330 Sum_probs=93.1
Q ss_pred cCCCCCCCcchHHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC-C--cEEEeCCccchHHHHHHHHHHcCCC-
Q 013605 74 FPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-N--VIAMSFAPRDSHEAQVQFALERGVP- 149 (439)
Q Consensus 74 fp~~~~~f~~g~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~-~--v~~vdis~~dis~a~i~~a~e~~~~- 149 (439)
|+.+...+.......++.+.+.+.+.+|. +|||||||.|.++.+++++ + |+++++|+.....+.. .++++|.+
T Consensus 46 f~~~~~tL~eAQ~~k~~~~~~kl~L~~G~--~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~-r~~~~gl~~ 122 (283)
T COG2230 46 FEDPDMTLEEAQRAKLDLILEKLGLKPGM--TLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEK-RIAARGLED 122 (283)
T ss_pred eCCCCCChHHHHHHHHHHHHHhcCCCCCC--EEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHH-HHHHcCCCc
Confidence 66666567677777888999999887766 9999999999999999988 5 5566665544333322 23345655
Q ss_pred -eEEEEecccccCCCCCCccEEEecccccccCCCh-HHHHHHHHHcCCCCeEEEEEe
Q 013605 150 -AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 150 -~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~liis~ 204 (439)
+.+...|...+. +.||-|++...++|+.... ..+++.+.++|+|||.+++-+
T Consensus 123 ~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 123 NVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred ccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 445444544443 4499999999999987654 899999999999999999865
No 38
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.29 E-value=1.1e-11 Score=114.32 Aligned_cols=100 Identities=21% Similarity=0.312 Sum_probs=82.6
Q ss_pred EEEEECCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeE-EEEecccccC-CCCCCccEEEeccccccc
Q 013605 105 TALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAV-IGVLGTIKMP-YASRAFDMAHCSRCLIPW 179 (439)
Q Consensus 105 ~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~a~i~~a~e~~~~~~-~~~~d~~~lp-~~d~sFDlV~~~~~l~~~ 179 (439)
.||+||||+|..-.+.-.. .|+.+|.++.+.+-+...++..+..... +++++.+.+| ++++|+|.|+|..++..
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCS- 157 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCS- 157 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEec-
Confidence 5899999999876666533 4888888887776666666666666655 8889999999 89999999999998854
Q ss_pred CCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 180 GANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 180 ~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
.+++...|+|+.|+|||||.+++..+
T Consensus 158 ve~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 158 VEDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 45889999999999999999999865
No 39
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.29 E-value=1.3e-11 Score=113.74 Aligned_cols=107 Identities=24% Similarity=0.316 Sum_probs=82.8
Q ss_pred HHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecc-cccC-CCCCC
Q 013605 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT-IKMP-YASRA 166 (439)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~-~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~-~~lp-~~d~s 166 (439)
+.|++++ .++ .+|||+|||.|.+..+|.+. ++.+.++ +++.+.+..+.++|+++. ++|+ +.|+ |++++
T Consensus 5 ~~I~~~I--~pg--srVLDLGCGdG~LL~~L~~~k~v~g~Gv---Eid~~~v~~cv~rGv~Vi--q~Dld~gL~~f~d~s 75 (193)
T PF07021_consen 5 QIIAEWI--EPG--SRVLDLGCGDGELLAYLKDEKQVDGYGV---EIDPDNVAACVARGVSVI--QGDLDEGLADFPDQS 75 (193)
T ss_pred HHHHHHc--CCC--CEEEecCCCchHHHHHHHHhcCCeEEEE---ecCHHHHHHHHHcCCCEE--ECCHHHhHhhCCCCC
Confidence 4566666 333 48999999999999999984 6777766 666677888889997644 4555 3454 99999
Q ss_pred ccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeCCCCc
Q 013605 167 FDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINW 209 (439)
Q Consensus 167 FDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p~~~~ 209 (439)
||.|+++.++.+.. ++..+|+|+.|+ |...+++.|+..+
T Consensus 76 FD~VIlsqtLQ~~~-~P~~vL~EmlRV---gr~~IVsFPNFg~ 114 (193)
T PF07021_consen 76 FDYVILSQTLQAVR-RPDEVLEEMLRV---GRRAIVSFPNFGH 114 (193)
T ss_pred ccEEehHhHHHhHh-HHHHHHHHHHHh---cCeEEEEecChHH
Confidence 99999999997764 789999999877 6688888877644
No 40
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.28 E-value=2.1e-11 Score=119.48 Aligned_cols=102 Identities=24% Similarity=0.269 Sum_probs=79.0
Q ss_pred CCCEEEEECCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccccCCCCCCccEEEeccc
Q 013605 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYASRAFDMAHCSRC 175 (439)
Q Consensus 102 ~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~d~sFDlV~~~~~ 175 (439)
.+.+|||+|||+|..+..++.. .++++|+++.++..+... ....+. .+.+..+++..+++++++||+|+++.+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~-~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARAN-ARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV 155 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHH-HHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence 3459999999999877665543 388999988666555433 233333 466778888889998899999999887
Q ss_pred ccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 176 LIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 176 l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
+++ .++...+++++.|+|||||.+++++.
T Consensus 156 ~~~-~~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 156 INL-SPDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred ccC-CCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 744 45778899999999999999999763
No 41
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.28 E-value=3.1e-12 Score=106.47 Aligned_cols=92 Identities=27% Similarity=0.449 Sum_probs=69.6
Q ss_pred EEEECCCCchHHHHHhhC-------CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEeccc-cc
Q 013605 106 ALDTGCGVASWGAYLWSR-------NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRC-LI 177 (439)
Q Consensus 106 VLDIGCG~G~~~~~La~~-------~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~-l~ 177 (439)
|||+|||+|..+..+++. .++++|+++.++..+... ..+.+.++.+.++|+..+++.+++||+|+|+.. ++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~-~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKR-FSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHH-SHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHh-chhcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 799999999999988854 478888877666544432 233456899999999999988999999999655 66
Q ss_pred ccCCCh-HHHHHHHHHcCCCCe
Q 013605 178 PWGAND-GRYMIEVDRVLRPGG 198 (439)
Q Consensus 178 ~~~~d~-~~~L~ei~RvLkPGG 198 (439)
|+.++. ..+++++.++|||||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 654333 789999999999998
No 42
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.27 E-value=3e-11 Score=121.91 Aligned_cols=115 Identities=19% Similarity=0.190 Sum_probs=85.0
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccC
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP 161 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp 161 (439)
+...+.+.+.+... ..+.+|||||||+|.++..+++. .++++|+++.++..+..... ...+.+..+|...++
T Consensus 98 e~~r~~~l~~~~l~-~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp 173 (340)
T PLN02490 98 EDMRDDALEPADLS-DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLP 173 (340)
T ss_pred HHHHHHHHhhcccC-CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCC
Confidence 33444444444322 23458999999999998888764 48889988766554443221 124567888888999
Q ss_pred CCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 162 ~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
+++++||+|+++.+++++. +...+++++.|+|||||.+++..+
T Consensus 174 ~~~~sFDvVIs~~~L~~~~-d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 174 FPTDYADRYVSAGSIEYWP-DPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred CCCCceeEEEEcChhhhCC-CHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999999999999886665 678899999999999999988754
No 43
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.26 E-value=6.9e-12 Score=119.70 Aligned_cols=136 Identities=17% Similarity=0.164 Sum_probs=87.1
Q ss_pred HHHHhhcCCeeecCCCCCCCcchHHHHHHHHHhhcCCCCCC-----CCEEEEECCCCchHHHHHhhCC--cEEEeCCccc
Q 013605 62 QNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGT-----VRTALDTGCGVASWGAYLWSRN--VIAMSFAPRD 134 (439)
Q Consensus 62 q~w~~~~~d~~~fp~~~~~f~~g~~~~i~~l~~~l~~~~~~-----~~~VLDIGCG~G~~~~~La~~~--v~~vdis~~d 134 (439)
..||+.++-.-.++.-+. .......+.+.+..+...+. +++|||+|||+|.++..|++.| |+++|+++
T Consensus 47 ~~wwd~~g~~~~Lh~mn~---~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlga~V~GID~s~-- 121 (282)
T KOG1270|consen 47 FTWWDEEGVRHPLHSMNQ---TRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLGAQVTGIDASD-- 121 (282)
T ss_pred ccccccccchhhhhhccc---hhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhCCeeEeecccH--
Confidence 368886665555543222 11122223444444221222 4689999999999999999987 66666655
Q ss_pred hHHHHHHHHHHcC---C----C----eEEEEecccccCCCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEE
Q 013605 135 SHEAQVQFALERG---V----P----AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (439)
Q Consensus 135 is~a~i~~a~e~~---~----~----~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis 203 (439)
.+++.|++.. + . ..+.+.+.+.+ .+.||+|+|+.+++|.. ++..++..+.++|||||.++++
T Consensus 122 ---~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcsevleHV~-dp~~~l~~l~~~lkP~G~lfit 194 (282)
T KOG1270|consen 122 ---DMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCSEVLEHVK-DPQEFLNCLSALLKPNGRLFIT 194 (282)
T ss_pred ---HHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeHHHHHHHh-CHHHHHHHHHHHhCCCCceEee
Confidence 4444444431 1 0 11223333333 24499999999999985 8899999999999999999999
Q ss_pred eCCCCc
Q 013605 204 GPPINW 209 (439)
Q Consensus 204 ~p~~~~ 209 (439)
+-...+
T Consensus 195 tinrt~ 200 (282)
T KOG1270|consen 195 TINRTI 200 (282)
T ss_pred ehhhhH
Confidence 754433
No 44
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.26 E-value=4.2e-11 Score=112.90 Aligned_cols=94 Identities=16% Similarity=0.138 Sum_probs=73.3
Q ss_pred CCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEecccccc
Q 013605 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~ 178 (439)
+.+|||||||+|.++..|++. .++++|+|+. +++.|+++...+.+.++++.. |+++++||+|++..+++|
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~-----~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~h 117 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEY-----AVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIH 117 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHH-----HHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhh
Confidence 458999999999999999875 3777777764 455555554456677778766 888999999999999988
Q ss_pred cCCCh-HHHHHHHHHcCCCCeEEEEEe
Q 013605 179 WGAND-GRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 179 ~~~d~-~~~L~ei~RvLkPGG~liis~ 204 (439)
+.++. ..+++++.|++ ++++++..
T Consensus 118 l~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 118 INPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred CCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 86443 78999999998 56777764
No 45
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.22 E-value=9.3e-11 Score=110.30 Aligned_cols=102 Identities=15% Similarity=0.148 Sum_probs=77.7
Q ss_pred CCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecc-cccC--CCCCCccEEEeccc
Q 013605 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT-IKMP--YASRAFDMAHCSRC 175 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~-~~lp--~~d~sFDlV~~~~~ 175 (439)
..+|||+|||+|.++..+++. .++++|+++.++..+..+.......++.+.++|+ ..++ +++++||+|+++.+
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~ 120 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFP 120 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECC
Confidence 458999999999999998775 4899999997666555433332223477888888 7776 77889999999764
Q ss_pred ccccCC--------ChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 176 LIPWGA--------NDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 176 l~~~~~--------d~~~~L~ei~RvLkPGG~liis~p 205 (439)
. +|.. ....+++++.++|||||+++++.+
T Consensus 121 ~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 121 D-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred C-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 3 3322 136789999999999999999865
No 46
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.20 E-value=3e-10 Score=96.81 Aligned_cols=111 Identities=18% Similarity=0.037 Sum_probs=76.4
Q ss_pred HHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc-cCC
Q 013605 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK-MPY 162 (439)
Q Consensus 88 ~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~-lp~ 162 (439)
....+.+.+....+ .+|||+|||+|.++..+++. .++++|+++..+..+.............+...+... ++.
T Consensus 7 ~~~~~~~~~~~~~~--~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (124)
T TIGR02469 7 VRALTLSKLRLRPG--DVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED 84 (124)
T ss_pred HHHHHHHHcCCCCC--CEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh
Confidence 33445555543333 48999999999999999875 388999988666555443332222245566666543 333
Q ss_pred CCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 163 ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 163 ~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
...+||.|++..... ....+++++.+.|+|||++++..
T Consensus 85 ~~~~~D~v~~~~~~~----~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 85 SLPEPDRVFIGGSGG----LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hcCCCCEEEECCcch----hHHHHHHHHHHHcCCCCEEEEEe
Confidence 346899999976432 23689999999999999999874
No 47
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.20 E-value=1.7e-10 Score=119.28 Aligned_cols=184 Identities=24% Similarity=0.378 Sum_probs=130.0
Q ss_pred CCccccCCCC-----CCCCCCCCCCCCCCC--ccC--CCCCCHHHHHHHHHHHhhcCCeeecCCCCCCCcchHHHHHHHH
Q 013605 22 LHCLIPAPKG-----YVTPFPWPKSRDYVP--YAN--APYKSLTVEKAIQNWIQYEGNVFRFPGGGTQFPQGADKYIDQL 92 (439)
Q Consensus 22 ~~c~~p~p~~-----y~~p~~wp~s~d~~w--~~n--vp~~~l~~~k~~q~w~~~~~d~~~fp~~~~~f~~g~~~~i~~l 92 (439)
..|+.|.|.. -..+.+||++...+. .+. +.....+..++..+.|+ .....|...+
T Consensus 294 ~~Cit~~p~~~~~~~~~~~~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk----------------~~V~~Y~~l~ 357 (506)
T PF03141_consen 294 EACITPLPEVSSEIAGGWLPKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWK----------------KRVSHYKKLL 357 (506)
T ss_pred hhhcCcCCcccccccccCCCCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHH----------------HHHHHHHHhh
Confidence 5789998874 566899999874332 222 33445566666666666 4445554333
Q ss_pred HhhcCCCCCCCCEEEEECCCCchHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEe
Q 013605 93 ASVIPIKNGTVRTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHC 172 (439)
Q Consensus 93 ~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~ 172 (439)
. +.+..+..+.|+|+.+|.|.|+++|.+..|.+|.+.|. ..........+||+=-.+. -=.+.++.-+.+||+||+
T Consensus 358 ~--~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydRGLIG~yh-DWCE~fsTYPRTYDLlHA 433 (506)
T PF03141_consen 358 G--LAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDRGLIGVYH-DWCEAFSTYPRTYDLLHA 433 (506)
T ss_pred c--ccccccceeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhcccchhcc-chhhccCCCCcchhheeh
Confidence 2 22356678899999999999999999999999999885 3344455666776522221 113566666899999999
Q ss_pred cccccccCCC--hHHHHHHHHHcCCCCeEEEEEeCCCCccccccccCCChHHHHHHHHHHHHHHHhcceeeec
Q 013605 173 SRCLIPWGAN--DGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKS 243 (439)
Q Consensus 173 ~~~l~~~~~d--~~~~L~ei~RvLkPGG~liis~p~~~~~~~~~~~~~~~e~l~~~~~~l~~l~~~l~W~~~~ 243 (439)
..++..+... ...+|.||+|+|||||+++|-+. .+....++.+++++.|+...
T Consensus 434 ~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~------------------~~vl~~v~~i~~~lrW~~~~ 488 (506)
T PF03141_consen 434 DGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT------------------VDVLEKVKKIAKSLRWEVRI 488 (506)
T ss_pred hhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc------------------HHHHHHHHHHHHhCcceEEE
Confidence 9888666532 27899999999999999999753 12445688899999999753
No 48
>PRK06922 hypothetical protein; Provisional
Probab=99.19 E-value=6.8e-11 Score=126.66 Aligned_cols=102 Identities=14% Similarity=0.123 Sum_probs=80.0
Q ss_pred CCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccC--CCCCCccEEEecccc
Q 013605 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--YASRAFDMAHCSRCL 176 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp--~~d~sFDlV~~~~~l 176 (439)
+.+|||||||+|.++..+++. .++++|+|+.++..+..+ +...+....+.++|...+| +++++||+|+++.++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Arar-l~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKK-KQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-hhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 348999999999998888764 489999988766655443 2233455677778887787 788999999999888
Q ss_pred cccC------------CChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 177 IPWG------------ANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 177 ~~~~------------~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
+++. .+...+|+++.++|||||.+++.+.
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 7653 1347899999999999999999863
No 49
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.19 E-value=8.7e-11 Score=111.84 Aligned_cols=95 Identities=18% Similarity=0.137 Sum_probs=73.5
Q ss_pred CEEEEECCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcC----------------CCeEEEEecccccCCC-C
Q 013605 104 RTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERG----------------VPAVIGVLGTIKMPYA-S 164 (439)
Q Consensus 104 ~~VLDIGCG~G~~~~~La~~~--v~~vdis~~dis~a~i~~a~e~~----------------~~~~~~~~d~~~lp~~-d 164 (439)
.+|||+|||.|..+.+|+++| |+++|+|+..+..++ .+++ ..+.+.++|+..++.. .
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~----~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFF----AENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHH----HHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 489999999999999999996 888888876554432 2332 3456677888776533 3
Q ss_pred CCccEEEecccccccCCCh-HHHHHHHHHcCCCCeEEEE
Q 013605 165 RAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVL 202 (439)
Q Consensus 165 ~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lii 202 (439)
+.||+|+...++++++++. ..+++.+.++|+|||++++
T Consensus 115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 6899999988888887555 7899999999999997554
No 50
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.18 E-value=3e-10 Score=112.65 Aligned_cols=122 Identities=16% Similarity=0.192 Sum_probs=81.1
Q ss_pred CCCCCcchHHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeE--
Q 013605 77 GGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAV-- 151 (439)
Q Consensus 77 ~~~~f~~g~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~a~i~~a~e~~~~~~-- 151 (439)
.+..|+.|.........+.+......+.+|||+|||+|.++..++.. .++++|+++.++..+.. .+...+....
T Consensus 134 pg~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~-n~~~n~~~~~~~ 212 (288)
T TIGR00406 134 PGLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARK-NAELNQVSDRLQ 212 (288)
T ss_pred CCCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHH-HHHHcCCCcceE
Confidence 44457776655554444444322223459999999999999888776 38999999876655544 3334444322
Q ss_pred EEEecccccCCCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 152 IGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 152 ~~~~d~~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
+...+ ..+..+++||+|+++... .....++.++.++|||||++++++.
T Consensus 213 ~~~~~--~~~~~~~~fDlVvan~~~----~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 213 VKLIY--LEQPIEGKADVIVANILA----EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred EEecc--cccccCCCceEEEEecCH----HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 22222 233446789999997533 1236789999999999999999874
No 51
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.17 E-value=2.7e-10 Score=107.80 Aligned_cols=132 Identities=15% Similarity=0.125 Sum_probs=84.0
Q ss_pred HHHHHhhc-CCeeecCCCCCCCcchHHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC-----CcEEEeCCccc
Q 013605 61 IQNWIQYE-GNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRD 134 (439)
Q Consensus 61 ~q~w~~~~-~d~~~fp~~~~~f~~g~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~d 134 (439)
.++|+... .|.|.-.+....+....-.-+.++.+.+... .++.+|||||||+|.++..++++ .|+++|+++ +
T Consensus 10 ~~~~~~~~~~d~~~~~~~~~~~~~r~~~kl~~~~~~~~~~-~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~ 87 (209)
T PRK11188 10 SSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLF-KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M 87 (209)
T ss_pred hHHHHHHhhcCHHHHHHhhcCCchhHHHhhHHHHHHhccC-CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c
Confidence 44455444 2434333333333333333333444444321 22358999999999999988875 388999976 1
Q ss_pred hHHHHHHHHHHcCCCeEEEEecccccC--------CCCCCccEEEecccccccCCCh-----------HHHHHHHHHcCC
Q 013605 135 SHEAQVQFALERGVPAVIGVLGTIKMP--------YASRAFDMAHCSRCLIPWGAND-----------GRYMIEVDRVLR 195 (439)
Q Consensus 135 is~a~i~~a~e~~~~~~~~~~d~~~lp--------~~d~sFDlV~~~~~l~~~~~d~-----------~~~L~ei~RvLk 195 (439)
. ....+.+.++|+...+ +.+++||+|+|+.+. ++..++ ..+|+++.++|+
T Consensus 88 ~----------~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~-~~~g~~~~d~~~~~~~~~~~L~~~~~~Lk 156 (209)
T PRK11188 88 D----------PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAP-NMSGTPAVDIPRAMYLVELALDMCRDVLA 156 (209)
T ss_pred c----------CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCC-ccCCChHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1 1134677788876642 667899999997754 333222 358899999999
Q ss_pred CCeEEEEEeC
Q 013605 196 PGGYWVLSGP 205 (439)
Q Consensus 196 PGG~liis~p 205 (439)
|||.|++...
T Consensus 157 pGG~~vi~~~ 166 (209)
T PRK11188 157 PGGSFVVKVF 166 (209)
T ss_pred CCCEEEEEEe
Confidence 9999999753
No 52
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.16 E-value=1.8e-10 Score=118.48 Aligned_cols=110 Identities=25% Similarity=0.426 Sum_probs=80.1
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC-C--cEEEeCCccchHHHHHHHHHHc--CCCeEEEEeccccc
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-N--VIAMSFAPRDSHEAQVQFALER--GVPAVIGVLGTIKM 160 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~-~--v~~vdis~~dis~a~i~~a~e~--~~~~~~~~~d~~~l 160 (439)
...++.+.+.+...++ .+|||||||+|.++..+++. + |+++|+|+. +++.|+++ +..+.+...|...+
T Consensus 153 ~~k~~~l~~~l~l~~g--~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~-----~l~~A~~~~~~l~v~~~~~D~~~l 225 (383)
T PRK11705 153 EAKLDLICRKLQLKPG--MRVLDIGCGWGGLARYAAEHYGVSVVGVTISAE-----QQKLAQERCAGLPVEIRLQDYRDL 225 (383)
T ss_pred HHHHHHHHHHhCCCCC--CEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHHhccCeEEEEECchhhc
Confidence 4445666666655444 48999999999999999875 4 777777664 44444443 33455555665544
Q ss_pred CCCCCCccEEEecccccccCCC-hHHHHHHHHHcCCCCeEEEEEeC
Q 013605 161 PYASRAFDMAHCSRCLIPWGAN-DGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 161 p~~d~sFDlV~~~~~l~~~~~d-~~~~L~ei~RvLkPGG~liis~p 205 (439)
+++||+|++..+++|.... ...+++++.++|||||++++...
T Consensus 226 ---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 226 ---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred ---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 4789999999888777533 37899999999999999999753
No 53
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.15 E-value=1.4e-10 Score=110.19 Aligned_cols=98 Identities=20% Similarity=0.258 Sum_probs=74.9
Q ss_pred EEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccccCCCCCCccEEEecccccc
Q 013605 105 TALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (439)
Q Consensus 105 ~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~ 178 (439)
+|||||||+|.++..+++. .++++|+++..+..+.. ...+.+. .+.+...|....+++ ++||+|++..+++|
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~-~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRE-RIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 7999999999999998875 37888887755444333 2233333 356677777555664 58999999998877
Q ss_pred cCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 179 WGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 179 ~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
+. +...+++++.++|||||++++.+.
T Consensus 80 ~~-~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 80 IK-DKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred CC-CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 64 678999999999999999999875
No 54
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.15 E-value=1.8e-10 Score=121.79 Aligned_cols=112 Identities=14% Similarity=0.227 Sum_probs=83.2
Q ss_pred HHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccc--ccCCCCC
Q 013605 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI--KMPYASR 165 (439)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~--~lp~~d~ 165 (439)
..+.+.+.... ..+|||||||+|.++..|++. .++++|+++.++..+.. .......+.+.++|+. .++++++
T Consensus 27 ~~il~~l~~~~--~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~--~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 27 PEILSLLPPYE--GKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES--INGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hHHHhhcCccC--CCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH--HhccCCceEEEEecccccccCCCCC
Confidence 34555554333 348999999999999999987 48899988866643321 1112234667777774 5778889
Q ss_pred CccEEEecccccccCCCh-HHHHHHHHHcCCCCeEEEEEeC
Q 013605 166 AFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 166 sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~liis~p 205 (439)
+||+|+|..+++|+.++. ..+++++.|+|||||++++...
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 999999999987776433 7899999999999999999764
No 55
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.14 E-value=2.8e-10 Score=107.99 Aligned_cols=116 Identities=19% Similarity=0.259 Sum_probs=83.6
Q ss_pred hHHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccc
Q 013605 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIK 159 (439)
Q Consensus 84 g~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~--v~~vdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~ 159 (439)
+...+.+.+.+.+.....+..+|||+|||+|.++..++..+ ++++|+++.++..++.+.. ..+. .+.+.+.++..
T Consensus 37 ~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~-~~~~~~~i~~~~~d~~~ 115 (219)
T TIGR02021 37 GRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQ-GRDVAGNVEFEVNDLLS 115 (219)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH-hcCCCCceEEEECChhh
Confidence 44555566666664212335589999999999999999874 8889998876655544332 2332 46777788776
Q ss_pred cCCCCCCccEEEecccccccCCC-hHHHHHHHHHcCCCCeEEEEE
Q 013605 160 MPYASRAFDMAHCSRCLIPWGAN-DGRYMIEVDRVLRPGGYWVLS 203 (439)
Q Consensus 160 lp~~d~sFDlV~~~~~l~~~~~d-~~~~L~ei~RvLkPGG~liis 203 (439)
++ ++||+|++..+++|+... ...+++++.+++++++++.+.
T Consensus 116 ~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 116 LC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred CC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 65 789999999888777533 378899999999987776654
No 56
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.13 E-value=2.7e-10 Score=106.42 Aligned_cols=100 Identities=14% Similarity=0.207 Sum_probs=76.0
Q ss_pred CEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccccC---CCCCCccEEEeccc
Q 013605 104 RTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMP---YASRAFDMAHCSRC 175 (439)
Q Consensus 104 ~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp---~~d~sFDlV~~~~~ 175 (439)
.+|||||||+|.++..++.+ .++++|+++.++..+..+. .+.++ .+.+..+|+..++ +++++||.|+++..
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~-~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKA-NKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHH-HHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 48999999999999999876 5899999887665555433 33333 4777888876553 55679999998764
Q ss_pred ccccCCCh--------HHHHHHHHHcCCCCeEEEEEeC
Q 013605 176 LIPWGAND--------GRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 176 l~~~~~d~--------~~~L~ei~RvLkPGG~liis~p 205 (439)
. +|.... ..+++++.++|||||.+++.+.
T Consensus 97 d-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 97 D-PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred C-cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 3 554321 4789999999999999999864
No 57
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.11 E-value=7.6e-10 Score=104.30 Aligned_cols=110 Identities=14% Similarity=0.033 Sum_probs=77.3
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEeccc
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTI 158 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~a~i~~a~e~~~~--~~~~~~d~~ 158 (439)
......+.+.+.... +.+|||||||+|..+..+++. .++++|+++.++..+.. .....+.. +.+..+|..
T Consensus 58 p~~~~~~~~~l~~~~--~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~-~l~~~~~~~~v~~~~~d~~ 134 (205)
T PRK13944 58 PHMVAMMCELIEPRP--GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQ-NIERLGYWGVVEVYHGDGK 134 (205)
T ss_pred HHHHHHHHHhcCCCC--CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCCcEEEEECCcc
Confidence 344556666665443 348999999999999888763 38999998865544443 33344443 567777776
Q ss_pred ccCCCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 159 KMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 159 ~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
......++||+|++..++.+. ..++.++|+|||.+++...
T Consensus 135 ~~~~~~~~fD~Ii~~~~~~~~-------~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 135 RGLEKHAPFDAIIVTAAASTI-------PSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred cCCccCCCccEEEEccCcchh-------hHHHHHhcCcCcEEEEEEc
Confidence 544456789999998766443 2578899999999998753
No 58
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=2.1e-10 Score=112.94 Aligned_cols=122 Identities=22% Similarity=0.309 Sum_probs=83.9
Q ss_pred CCCCcchHHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCCCeEEEE
Q 013605 78 GTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVPAVIGV 154 (439)
Q Consensus 78 ~~~f~~g~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~---v~~vdis~~dis~a~i~~a~e~~~~~~~~~ 154 (439)
|-.|+.|.........+.+.....++++|||+|||+|-++...+..| +.++|++|..+ +++.+.++.++++.....
T Consensus 138 GlAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV-~aa~eNa~~N~v~~~~~~ 216 (300)
T COG2264 138 GLAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAV-EAARENARLNGVELLVQA 216 (300)
T ss_pred ccccCCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHH-HHHHHHHHHcCCchhhhc
Confidence 44577777665554455544333456799999999999999888874 89999998555 344456666666631111
Q ss_pred ecccccCCCC-CCccEEEecccccccCCCh-HHHHHHHHHcCCCCeEEEEEeC
Q 013605 155 LGTIKMPYAS-RAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 155 ~d~~~lp~~d-~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~liis~p 205 (439)
.....+..+. +.||+|+++-.. ++ ..+..++.+.|||||++++|+-
T Consensus 217 ~~~~~~~~~~~~~~DvIVANILA-----~vl~~La~~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 217 KGFLLLEVPENGPFDVIVANILA-----EVLVELAPDIKRLLKPGGRLILSGI 264 (300)
T ss_pred ccccchhhcccCcccEEEehhhH-----HHHHHHHHHHHHHcCCCceEEEEee
Confidence 1112222333 589999997522 33 6888999999999999999974
No 59
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.11 E-value=3e-10 Score=105.04 Aligned_cols=99 Identities=22% Similarity=0.264 Sum_probs=70.6
Q ss_pred CCCCEEEEECCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcC---CCeEEEEecccccCCCCCCccEEEeccc
Q 013605 101 GTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERG---VPAVIGVLGTIKMPYASRAFDMAHCSRC 175 (439)
Q Consensus 101 ~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~a~i~~a~e~~---~~~~~~~~d~~~lp~~d~sFDlV~~~~~ 175 (439)
+..+++||+|||.|.++..|+.+ .++++|+++. +++.|+++- ..+.+.+++.... .+.++||+|+++.+
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~-----Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEV 115 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPR-----ALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEV 115 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HH-----HHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEEeCCHH-----HHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehH
Confidence 44568999999999999999998 5899988774 445555542 3477777777443 57889999999999
Q ss_pred ccccCCC--hHHHHHHHHHcCCCCeEEEEEeC
Q 013605 176 LIPWGAN--DGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 176 l~~~~~d--~~~~L~ei~RvLkPGG~liis~p 205 (439)
++.+.+. ...++..+...|+|||.+++...
T Consensus 116 lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 116 LYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 8666532 26789999999999999999763
No 60
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.11 E-value=7.5e-10 Score=104.23 Aligned_cols=113 Identities=19% Similarity=0.236 Sum_probs=81.7
Q ss_pred HHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCC
Q 013605 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPY 162 (439)
Q Consensus 88 ~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~ 162 (439)
+.+.+.+.+... .+.+|||+|||+|.++..+++. .++++|+++..+..+..... ....+.+..+++..+++
T Consensus 27 ~~~~~~~~~~~~--~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~ 102 (223)
T TIGR01934 27 WRRRAVKLIGVF--KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPF 102 (223)
T ss_pred HHHHHHHHhccC--CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCC
Confidence 334455555333 3458999999999999988875 37778877643333222211 12346777888888888
Q ss_pred CCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 163 ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 163 ~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
++++||+|+++..+++. .+...+++++.+.|+|||.+++...
T Consensus 103 ~~~~~D~i~~~~~~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 103 EDNSFDAVTIAFGLRNV-TDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CCCcEEEEEEeeeeCCc-ccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 88899999998877554 4778999999999999999998753
No 61
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.11 E-value=1.2e-09 Score=106.19 Aligned_cols=118 Identities=22% Similarity=0.247 Sum_probs=76.4
Q ss_pred CCCCCcchHHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCCCeEEE
Q 013605 77 GGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVPAVIG 153 (439)
Q Consensus 77 ~~~~f~~g~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~---v~~vdis~~dis~a~i~~a~e~~~~~~~~ 153 (439)
.+..|+.|.......+.+.+......+.+|||+|||+|.++..++..+ ++++|+++.++..+.. .+...++...+.
T Consensus 94 p~~afgtg~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~-n~~~~~~~~~~~ 172 (250)
T PRK00517 94 PGMAFGTGTHPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARE-NAELNGVELNVY 172 (250)
T ss_pred CCCccCCCCCHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHH-HHHHcCCCceEE
Confidence 344566666554444444443222345589999999999998877753 8899998866654443 333344421111
Q ss_pred EecccccCCCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 154 VLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 154 ~~d~~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
++..+.+||+|+++... .....++.++.++|||||++++++.
T Consensus 173 ------~~~~~~~fD~Vvani~~----~~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 173 ------LPQGDLKADVIVANILA----NPLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred ------EccCCCCcCEEEEcCcH----HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 22223379999997532 1236788999999999999999864
No 62
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.11 E-value=2.7e-10 Score=111.52 Aligned_cols=103 Identities=16% Similarity=0.262 Sum_probs=75.0
Q ss_pred CCCEEEEECCCCch----HHHHHhhC---------CcEEEeCCccchHHHHHHHHH---HcC------------------
Q 013605 102 TVRTALDTGCGVAS----WGAYLWSR---------NVIAMSFAPRDSHEAQVQFAL---ERG------------------ 147 (439)
Q Consensus 102 ~~~~VLDIGCG~G~----~~~~La~~---------~v~~vdis~~dis~a~i~~a~---e~~------------------ 147 (439)
.+.+|||+|||+|. ++..|++. .++++|+|+.++..+....-. -++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34689999999995 44444432 388888888766555432100 000
Q ss_pred ------CCeEEEEecccccCCCCCCccEEEecccccccCCCh-HHHHHHHHHcCCCCeEEEEEe
Q 013605 148 ------VPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 148 ------~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~liis~ 204 (439)
..+.|.+.|+...++++++||+|+|.++++++.... ..+++++.++|+|||++++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 135677888888777788999999999998885332 689999999999999999964
No 63
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.10 E-value=9.3e-10 Score=104.71 Aligned_cols=115 Identities=17% Similarity=0.204 Sum_probs=83.3
Q ss_pred HHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHH-cCCCeEEEEecccccC
Q 013605 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALE-RGVPAVIGVLGTIKMP 161 (439)
Q Consensus 88 ~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~a~i~~a~e-~~~~~~~~~~d~~~lp 161 (439)
....+...+... .+.+|||+|||+|.++..++.. .++++|+++..+..+....... ....+.+...++..++
T Consensus 39 ~~~~~~~~~~~~--~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 116 (239)
T PRK00216 39 WRRKTIKWLGVR--PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP 116 (239)
T ss_pred HHHHHHHHhCCC--CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC
Confidence 334445555433 2358999999999999888764 4788888875554444332221 1234677778888888
Q ss_pred CCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 162 ~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
++.++||+|+++.++++. .+...++.++.++|+|||.+++...
T Consensus 117 ~~~~~~D~I~~~~~l~~~-~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 117 FPDNSFDAVTIAFGLRNV-PDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred CCCCCccEEEEecccccC-CCHHHHHHHHHHhccCCcEEEEEEe
Confidence 878899999999887555 4778999999999999999988753
No 64
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.10 E-value=8.8e-10 Score=101.98 Aligned_cols=96 Identities=17% Similarity=0.144 Sum_probs=72.2
Q ss_pred CCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccccCCCCCCccEEEeccccc
Q 013605 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~d~sFDlV~~~~~l~ 177 (439)
+.+|||+|||+|.++..++.. .|+++|+++.++..+.. .+++.+. .+.+..+++..++ .+++||+|+|.. +
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~-~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~- 118 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLRE-VKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L- 118 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHH-HHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h-
Confidence 458999999999999887753 38999998876654433 3444454 4677888887764 367899999865 2
Q ss_pred ccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 178 PWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 178 ~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
.+...+++.+.++|+|||.+++...
T Consensus 119 ---~~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 119 ---ASLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred ---hCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 2446788999999999999998753
No 65
>PRK06202 hypothetical protein; Provisional
Probab=99.10 E-value=6.9e-10 Score=106.32 Aligned_cols=96 Identities=19% Similarity=0.193 Sum_probs=69.6
Q ss_pred CCCEEEEECCCCchHHHHHhhC--------CcEEEeCCccchHHHHHHHHHHcC--CCeEEEEecccccCCCCCCccEEE
Q 013605 102 TVRTALDTGCGVASWGAYLWSR--------NVIAMSFAPRDSHEAQVQFALERG--VPAVIGVLGTIKMPYASRAFDMAH 171 (439)
Q Consensus 102 ~~~~VLDIGCG~G~~~~~La~~--------~v~~vdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~lp~~d~sFDlV~ 171 (439)
.+.+|||+|||+|.++..|++. .++++|+++.++. .|+++. ....+.+.+...+++++++||+|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~-----~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~ 134 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVA-----FARANPRRPGVTFRQAVSDELVAEGERFDVVT 134 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHH-----HHHhccccCCCeEEEEecccccccCCCccEEE
Confidence 3458999999999998888641 4788888775544 443331 234555566667777788999999
Q ss_pred ecccccccCCCh-HHHHHHHHHcCCCCeEEEEEe
Q 013605 172 CSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 172 ~~~~l~~~~~d~-~~~L~ei~RvLkPGG~liis~ 204 (439)
|+.+++|+.++. ..+++++.|+++ |.+++.+
T Consensus 135 ~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 135 SNHFLHHLDDAEVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred ECCeeecCChHHHHHHHHHHHHhcC--eeEEEec
Confidence 999998876432 579999999998 5555554
No 66
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.10 E-value=1e-09 Score=104.95 Aligned_cols=115 Identities=17% Similarity=0.234 Sum_probs=82.0
Q ss_pred HHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccC-CCC
Q 013605 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP-YAS 164 (439)
Q Consensus 88 ~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~--v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp-~~d 164 (439)
.++.+...+.. ....+|||||||+|.++..+++.+ ++++|+++..+..+... ....+....+...+...++ ..+
T Consensus 36 ~~~~l~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~ 112 (233)
T PRK05134 36 RLNYIREHAGG--LFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLH-ALESGLKIDYRQTTAEELAAEHP 112 (233)
T ss_pred HHHHHHHhccC--CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHH-HHHcCCceEEEecCHHHhhhhcC
Confidence 34455555532 234589999999999999988874 78888877554433332 2223445566666665554 345
Q ss_pred CCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeCC
Q 013605 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (439)
Q Consensus 165 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p~ 206 (439)
++||+|+++.++.+.. +...+++++.++|+|||.++++.+.
T Consensus 113 ~~fD~Ii~~~~l~~~~-~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 113 GQFDVVTCMEMLEHVP-DPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred CCccEEEEhhHhhccC-CHHHHHHHHHHHcCCCcEEEEEecC
Confidence 7899999998886654 6788999999999999999998753
No 67
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.09 E-value=1.5e-09 Score=99.33 Aligned_cols=114 Identities=21% Similarity=0.252 Sum_probs=76.8
Q ss_pred HHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC--C--cEEEeCCccchHHHHHHHHHHcCCC-eEEEEecccccCC
Q 013605 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--N--VIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPY 162 (439)
Q Consensus 88 ~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~--~--v~~vdis~~dis~a~i~~a~e~~~~-~~~~~~d~~~lp~ 162 (439)
-...|.+.+... ...+|||+|||+|.++..++.. . ++++|+++..+..+.. .+...+.+ +.+...|... +.
T Consensus 19 ~t~lL~~~l~~~--~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~-n~~~n~~~~v~~~~~d~~~-~~ 94 (170)
T PF05175_consen 19 GTRLLLDNLPKH--KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKR-NAERNGLENVEVVQSDLFE-AL 94 (170)
T ss_dssp HHHHHHHHHHHH--TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHH-HHHHTTCTTEEEEESSTTT-TC
T ss_pred HHHHHHHHHhhc--cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH-HHHhcCccccccccccccc-cc
Confidence 333444444332 2348999999999999999986 3 8999998865544433 44455555 6666666532 23
Q ss_pred CCCCccEEEecccccccCCC----hHHHHHHHHHcCCCCeEEEEEeC
Q 013605 163 ASRAFDMAHCSRCLIPWGAN----DGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 163 ~d~sFDlV~~~~~l~~~~~d----~~~~L~ei~RvLkPGG~liis~p 205 (439)
++++||+|+|+..++.-..+ ...++++..+.|+|||.+++...
T Consensus 95 ~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 95 PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 47899999999865333221 26789999999999999987654
No 68
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.09 E-value=2.8e-10 Score=112.78 Aligned_cols=123 Identities=23% Similarity=0.265 Sum_probs=84.2
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCCCeEE
Q 013605 76 GGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVPAVI 152 (439)
Q Consensus 76 ~~~~~f~~g~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~---v~~vdis~~dis~a~i~~a~e~~~~~~~ 152 (439)
..+..|+.|.........+++.....++.+|||+|||+|-++...+..| |.++|++|..+ +.+.+.+..+++...+
T Consensus 135 dPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av-~~a~~N~~~N~~~~~~ 213 (295)
T PF06325_consen 135 DPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAV-EAARENAELNGVEDRI 213 (295)
T ss_dssp STTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHH-HHHHHHHHHTT-TTCE
T ss_pred CCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHH-HHHHHHHHHcCCCeeE
Confidence 3456799999777665555554333445599999999999988877764 89999999544 4445567777776655
Q ss_pred EEecccccCCCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 153 GVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 153 ~~~d~~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
.+..... ...+.||+|+++-.. + -...++..+.++|+|||++++|+-
T Consensus 214 ~v~~~~~--~~~~~~dlvvANI~~-~---vL~~l~~~~~~~l~~~G~lIlSGI 260 (295)
T PF06325_consen 214 EVSLSED--LVEGKFDLVVANILA-D---VLLELAPDIASLLKPGGYLILSGI 260 (295)
T ss_dssp EESCTSC--TCCS-EEEEEEES-H-H---HHHHHHHHCHHHEEEEEEEEEEEE
T ss_pred EEEEecc--cccccCCEEEECCCH-H---HHHHHHHHHHHhhCCCCEEEEccc
Confidence 4432222 335889999997633 1 126788889999999999999974
No 69
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.09 E-value=8.6e-10 Score=108.18 Aligned_cols=111 Identities=23% Similarity=0.297 Sum_probs=81.3
Q ss_pred HHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhCCc-EEEeCCccchHHHHHHHHHHc-CCCeEEEE--ecccccCCCCC
Q 013605 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRNV-IAMSFAPRDSHEAQVQFALER-GVPAVIGV--LGTIKMPYASR 165 (439)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~v-~~vdis~~dis~a~i~~a~e~-~~~~~~~~--~d~~~lp~~d~ 165 (439)
+.+...++ +-.+++|||||||+|+++..|+.+|. .+++++|......+.+++++- +....+.. ..++.+|. .+
T Consensus 105 ~rl~p~l~--~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~ 181 (315)
T PF08003_consen 105 DRLLPHLP--DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LG 181 (315)
T ss_pred HHHHhhhC--CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cC
Confidence 44555553 23456999999999999999999862 344555555555665555543 23332222 46788887 78
Q ss_pred CccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 166 sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
+||+|+|..++.|.. ++-..|.++...|+|||.+++.+
T Consensus 182 ~FDtVF~MGVLYHrr-~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 182 AFDTVFSMGVLYHRR-SPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred CcCEEEEeeehhccC-CHHHHHHHHHHhhCCCCEEEEEE
Confidence 999999999998875 88999999999999999999853
No 70
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.08 E-value=8.2e-10 Score=112.82 Aligned_cols=100 Identities=17% Similarity=0.213 Sum_probs=78.5
Q ss_pred CEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccc--CCCCCCccEEEecccc
Q 013605 104 RTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKM--PYASRAFDMAHCSRCL 176 (439)
Q Consensus 104 ~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~l--p~~d~sFDlV~~~~~l 176 (439)
..+||||||+|.++..++.+ .++|+|+++.++..+..+ +...++ .+.+..+|+..+ .+++++||.|++++..
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~k-a~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPd 202 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQ-IELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFPV 202 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHH-HHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCC
Confidence 48999999999999999976 599999998777666554 444444 466777787554 5789999999987643
Q ss_pred cccCCCh------HHHHHHHHHcCCCCeEEEEEeC
Q 013605 177 IPWGAND------GRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 177 ~~~~~d~------~~~L~ei~RvLkPGG~liis~p 205 (439)
+|.... ..++.++.|+|+|||.+.+.+.
T Consensus 203 -PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 203 -PWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred -CccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 665433 4799999999999999999764
No 71
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.08 E-value=2.2e-09 Score=108.91 Aligned_cols=144 Identities=15% Similarity=0.133 Sum_probs=95.2
Q ss_pred HHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCC
Q 013605 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA 163 (439)
Q Consensus 88 ~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~ 163 (439)
-.+.+.+.+.... ..+|||+|||+|.++..++++ .++++|+++.++..+... +...+....+...|... ..
T Consensus 184 gt~lLl~~l~~~~--~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~n-l~~n~l~~~~~~~D~~~--~~ 258 (342)
T PRK09489 184 GSQLLLSTLTPHT--KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRAT-LAANGLEGEVFASNVFS--DI 258 (342)
T ss_pred HHHHHHHhccccC--CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCEEEEccccc--cc
Confidence 3344455554322 237999999999999999875 488999998776655543 34455566666555532 23
Q ss_pred CCCccEEEecccccccCC----ChHHHHHHHHHcCCCCeEEEEEeCCCCccccccccCCChHHHHHHHHHHHHHHHhcce
Q 013605 164 SRAFDMAHCSRCLIPWGA----NDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCW 239 (439)
Q Consensus 164 d~sFDlV~~~~~l~~~~~----d~~~~L~ei~RvLkPGG~liis~p~~~~~~~~~~~~~~~e~l~~~~~~l~~l~~~l~W 239 (439)
+++||+|+|+..+|.... ....+++++.+.|||||.++++.... . ... ..+++... ..
T Consensus 259 ~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~--l-------~y~-------~~l~~~Fg--~~ 320 (342)
T PRK09489 259 KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAF--L-------PYP-------DLLDETFG--SH 320 (342)
T ss_pred CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCC--C-------ChH-------HHHHHHcC--Ce
Confidence 578999999987754322 12689999999999999999987532 0 001 11222222 25
Q ss_pred eeecccCcEEEEecc
Q 013605 240 EKKSEKGEIAVWQKK 254 (439)
Q Consensus 240 ~~~~~~~~~~Iwqkp 254 (439)
+.+.+.+...||+-.
T Consensus 321 ~~la~~~~f~v~~a~ 335 (342)
T PRK09489 321 EVLAQTGRFKVYRAI 335 (342)
T ss_pred EEEEeCCCEEEEEEE
Confidence 777888888888643
No 72
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=3.1e-09 Score=104.36 Aligned_cols=163 Identities=20% Similarity=0.237 Sum_probs=105.8
Q ss_pred CCeeecCCCCCCCcchH-HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHH
Q 013605 69 GNVFRFPGGGTQFPQGA-DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFA 143 (439)
Q Consensus 69 ~d~~~fp~~~~~f~~g~-~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a 143 (439)
+..+.|-+.-..|+.+. +.=.+.|.+.++...+. +|||+|||.|.++..|++. .++.+|++...+..++. .+
T Consensus 126 ~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~~~--~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~-Nl 202 (300)
T COG2813 126 GHELTFKTLPGVFSRDKLDKGSRLLLETLPPDLGG--KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARK-NL 202 (300)
T ss_pred cCceEEEeCCCCCcCCCcChHHHHHHHhCCccCCC--cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHH-hH
Confidence 56667776666676655 44456667777544433 8999999999999999987 48888887755544444 34
Q ss_pred HHcCCCeEEEEecccccCCCCCCccEEEecccccccCCCh----HHHHHHHHHcCCCCeEEEEEeCCCCccccccccCCC
Q 013605 144 LERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAND----GRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRP 219 (439)
Q Consensus 144 ~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~~~d~----~~~L~ei~RvLkPGG~liis~p~~~~~~~~~~~~~~ 219 (439)
..++++...+..+....+..+ +||+|+|+..+|.-..-. .+++.+..+.|++||.+.|+.... ...
T Consensus 203 ~~N~~~~~~v~~s~~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~---------l~y 272 (300)
T COG2813 203 AANGVENTEVWASNLYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRH---------LPY 272 (300)
T ss_pred HHcCCCccEEEEecccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCC---------CCh
Confidence 444555423333333444445 899999999775433222 389999999999999999987522 111
Q ss_pred hHHHHHHHHHHHHHHHhcceeeecccCcEEEEec
Q 013605 220 KEELQEEQRKIEEIANLLCWEKKSEKGEIAVWQK 253 (439)
Q Consensus 220 ~e~l~~~~~~l~~l~~~l~W~~~~~~~~~~Iwqk 253 (439)
. ..|+++... -+.+.+.+...|++-
T Consensus 273 ~-------~~L~~~Fg~--v~~la~~~gf~Vl~a 297 (300)
T COG2813 273 E-------KKLKELFGN--VEVLAKNGGFKVLRA 297 (300)
T ss_pred H-------HHHHHhcCC--EEEEEeCCCEEEEEE
Confidence 1 223343332 456677777777764
No 73
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.07 E-value=1.2e-09 Score=109.33 Aligned_cols=117 Identities=17% Similarity=0.165 Sum_probs=77.0
Q ss_pred hHHHHHHHHHhhcCCC-CCCCCEEEEECCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHc-----CCCeEEEEe
Q 013605 84 GADKYIDQLASVIPIK-NGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALER-----GVPAVIGVL 155 (439)
Q Consensus 84 g~~~~i~~l~~~l~~~-~~~~~~VLDIGCG~G~~~~~La~~~--v~~vdis~~dis~a~i~~a~e~-----~~~~~~~~~ 155 (439)
+....++.+.+.+... ..++.+|||||||+|.++..|++.+ |+++|+++.++..+..+..... .....+...
T Consensus 125 ~~~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~ 204 (315)
T PLN02585 125 GHAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAN 204 (315)
T ss_pred ChHHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEc
Confidence 3445556666666432 1234589999999999999999885 8899998877766554332210 123456666
Q ss_pred cccccCCCCCCccEEEecccccccCCCh-HHHHHHHHHcCCCCeEEEEEeC
Q 013605 156 GTIKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 156 d~~~lp~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~liis~p 205 (439)
|...+ +++||+|+|..+++|+..+. ..+++.+.+ +.+||.++ +..
T Consensus 205 Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI-s~~ 250 (315)
T PLN02585 205 DLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII-SFA 250 (315)
T ss_pred chhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE-EeC
Confidence 65443 57899999999998886544 456666665 45666544 443
No 74
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.07 E-value=1.2e-09 Score=103.54 Aligned_cols=109 Identities=15% Similarity=0.119 Sum_probs=77.2
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccc
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIK 159 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~ 159 (439)
......+.+.+...++ .+|||||||+|+++..+++. .++++|+++..+..+.. .....+. .+.+..+|...
T Consensus 62 p~~~~~~~~~l~~~~g--~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~-~l~~~g~~~v~~~~gd~~~ 138 (212)
T PRK13942 62 IHMVAIMCELLDLKEG--MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKK-TLKKLGYDNVEVIVGDGTL 138 (212)
T ss_pred HHHHHHHHHHcCCCCc--CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCCeEEEECCccc
Confidence 4455666677755444 49999999999999888764 48999998865544443 3333444 46778888766
Q ss_pred cCCCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 160 MPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 160 lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
...+.+.||+|++.....+ ....+.+.|||||.+++..
T Consensus 139 ~~~~~~~fD~I~~~~~~~~-------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 139 GYEENAPYDRIYVTAAGPD-------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCCcCCCcCEEEECCCccc-------chHHHHHhhCCCcEEEEEE
Confidence 5556788999999765422 2356778999999999864
No 75
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.07 E-value=1.5e-09 Score=99.90 Aligned_cols=99 Identities=17% Similarity=0.218 Sum_probs=74.0
Q ss_pred CEEEEECCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEecccccccCC
Q 013605 104 RTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGA 181 (439)
Q Consensus 104 ~~VLDIGCG~G~~~~~La~~~--v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~~~ 181 (439)
.+|||+|||+|.++..++..+ ++++|+++.++..+.... ...+....+..+|....+ .++||+|+++..+++..+
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~ 97 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENA-KLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLED 97 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHH-HHcCCceEEEEccccccc--CCcccEEEECCCCCCCcc
Confidence 479999999999999999874 789999886665544433 334455666777765433 458999999987755532
Q ss_pred C--------------------hHHHHHHHHHcCCCCeEEEEEeC
Q 013605 182 N--------------------DGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 182 d--------------------~~~~L~ei~RvLkPGG~liis~p 205 (439)
. ...++.++.++|+|||.+++..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 98 DLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred hhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 1 14679999999999999999864
No 76
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.06 E-value=5.3e-09 Score=96.86 Aligned_cols=111 Identities=16% Similarity=0.049 Sum_probs=76.3
Q ss_pred HHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccc
Q 013605 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIK 159 (439)
Q Consensus 85 ~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~ 159 (439)
.+.....+.+.+.... +.+|||+|||+|.++..++.. .++++|+++.++..+.... ...+. .+.+..++..
T Consensus 16 ~~~~r~~~~~~l~~~~--~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~-~~~~~~~i~~~~~d~~- 91 (187)
T PRK08287 16 KEEVRALALSKLELHR--AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENR-QRFGCGNIDIIPGEAP- 91 (187)
T ss_pred hHHHHHHHHHhcCCCC--CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHhCCCCeEEEecCch-
Confidence 3444445556664443 348999999999999988875 4889999886665544333 33333 3555555553
Q ss_pred cCCCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 160 MPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 160 lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
.++ .++||+|++.... .....++.++.++|+|||++++..
T Consensus 92 ~~~-~~~~D~v~~~~~~----~~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 92 IEL-PGKADAIFIGGSG----GNLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred hhc-CcCCCEEEECCCc----cCHHHHHHHHHHhcCCCeEEEEEE
Confidence 233 3579999997643 234678999999999999999875
No 77
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.06 E-value=1.5e-09 Score=111.05 Aligned_cols=129 Identities=12% Similarity=0.181 Sum_probs=83.8
Q ss_pred eecCCCCCCCcchH-HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc
Q 013605 72 FRFPGGGTQFPQGA-DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALER 146 (439)
Q Consensus 72 ~~fp~~~~~f~~g~-~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~ 146 (439)
+.+......|+.+. +.=.+.+.+.++.... .+|||+|||+|.++..++++ .++++|+++.++..++.... ..
T Consensus 199 ~~~~~~~gVFs~~~LD~GtrllL~~lp~~~~--~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~-~n 275 (378)
T PRK15001 199 WTIHNHANVFSRTGLDIGARFFMQHLPENLE--GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVE-TN 275 (378)
T ss_pred EEEEecCCccCCCCcChHHHHHHHhCCcccC--CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-Hc
Confidence 33433334454432 3334455666654322 48999999999999999876 48999998866655544332 22
Q ss_pred CC----CeEEEEecccccCCCCCCccEEEecccccccC--CCh--HHHHHHHHHcCCCCeEEEEEe
Q 013605 147 GV----PAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG--AND--GRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 147 ~~----~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~~--~d~--~~~L~ei~RvLkPGG~liis~ 204 (439)
+. .+.+...|... .+++++||+|+|+..++.-. .+. ..++.++.++|+|||.+++..
T Consensus 276 ~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 276 MPEALDRCEFMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CcccCceEEEEEccccc-cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 22 24555555422 13456899999998774321 111 578999999999999999986
No 78
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.04 E-value=2.1e-09 Score=101.91 Aligned_cols=108 Identities=16% Similarity=0.158 Sum_probs=75.9
Q ss_pred HHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC--C---cEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccc
Q 013605 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--N---VIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKM 160 (439)
Q Consensus 87 ~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~--~---v~~vdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~l 160 (439)
.....+.+.+....+ .+|||||||+|.++..|++. . |+++|+++..+..+. +.+.+.+. .+.+..+|....
T Consensus 64 ~~~~~~~~~l~~~~~--~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~-~~~~~~g~~~v~~~~~d~~~~ 140 (215)
T TIGR00080 64 HMVAMMTELLELKPG--MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAE-RRLRKLGLDNVIVIVGDGTQG 140 (215)
T ss_pred HHHHHHHHHhCCCCc--CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHCCCCCeEEEECCcccC
Confidence 344566666654444 49999999999999988875 2 899999886554443 34444444 466777777554
Q ss_pred CCCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 161 p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
....++||+|++..+..+ +...+.+.|+|||++++..
T Consensus 141 ~~~~~~fD~Ii~~~~~~~-------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 141 WEPLAPYDRIYVTAAGPK-------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred CcccCCCCEEEEcCCccc-------ccHHHHHhcCcCcEEEEEE
Confidence 444568999998764422 3466889999999999874
No 79
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.04 E-value=2.4e-09 Score=102.14 Aligned_cols=102 Identities=18% Similarity=0.118 Sum_probs=79.7
Q ss_pred CCEEEEECCCCchHHHHHhhCC--cEEEeCCccchHHHHHHH------------HHHcCCCeEEEEecccccCCC---CC
Q 013605 103 VRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQF------------ALERGVPAVIGVLGTIKMPYA---SR 165 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~~--v~~vdis~~dis~a~i~~------------a~e~~~~~~~~~~d~~~lp~~---d~ 165 (439)
+.+||+.|||.|..+.+|+++| |+++|+|+..+.....+. ...++..+.+.++|...++.. .+
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~ 123 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLP 123 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccC
Confidence 3589999999999999999996 888888876554432211 011345678899999888642 36
Q ss_pred CccEEEecccccccCCCh-HHHHHHHHHcCCCCeEEEEEe
Q 013605 166 AFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 166 sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~liis~ 204 (439)
.||+|+-..++++++++. .++.+.+.++|+|||.+++..
T Consensus 124 ~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 124 VFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred CcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 899999988898888766 899999999999999988865
No 80
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.03 E-value=2.4e-09 Score=97.15 Aligned_cols=127 Identities=20% Similarity=0.282 Sum_probs=87.2
Q ss_pred CCcchH-HHHHHHHHhhcCCC--CCCCCEEEEECCCCchHHHHHhhCC----cEEEeCCccchHHHHHHHHHHcCCC--e
Q 013605 80 QFPQGA-DKYIDQLASVIPIK--NGTVRTALDTGCGVASWGAYLWSRN----VIAMSFAPRDSHEAQVQFALERGVP--A 150 (439)
Q Consensus 80 ~f~~g~-~~~i~~l~~~l~~~--~~~~~~VLDIGCG~G~~~~~La~~~----v~~vdis~~dis~a~i~~a~e~~~~--~ 150 (439)
.|+..+ ...++.+.+.+... .....+|||+|||+|.+...|++.+ .+++|.|+..+.- +...|+..+.+ +
T Consensus 42 WFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~L-A~niAe~~~~~n~I 120 (227)
T KOG1271|consen 42 WFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVEL-AQNIAERDGFSNEI 120 (227)
T ss_pred ecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHH-HHHHHHhcCCCcce
Confidence 366666 44555555555311 1112289999999999999999974 7788888765543 33456666666 7
Q ss_pred EEEEecccccCCCCCCccEEEeccccc--ccCCC-----hHHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 151 VIGVLGTIKMPYASRAFDMAHCSRCLI--PWGAN-----DGRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 151 ~~~~~d~~~lp~~d~sFDlV~~~~~l~--~~~~d-----~~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
.|.+.|+..-.+..+.||+|+--..+- .+.++ +..++..+.++|+|||.|+|+....
T Consensus 121 ~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 121 RFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred eEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 888999876677788899998433221 11111 2568899999999999999997633
No 81
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.03 E-value=1.8e-09 Score=102.71 Aligned_cols=112 Identities=25% Similarity=0.336 Sum_probs=75.7
Q ss_pred HHHHHHHHhhcCC-CCCCCCEEEEECCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccc
Q 013605 86 DKYIDQLASVIPI-KNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKM 160 (439)
Q Consensus 86 ~~~i~~l~~~l~~-~~~~~~~VLDIGCG~G~~~~~La~~~--v~~vdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~l 160 (439)
....+.+.+.+.. ...+..+|||||||+|.++..|++.+ ++++|+++.++..+...... .+. .+.+..+| +
T Consensus 46 ~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~-~~~~~~i~~~~~d---~ 121 (230)
T PRK07580 46 QRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPE-AGLAGNITFEVGD---L 121 (230)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh-cCCccCcEEEEcC---c
Confidence 4444555555532 11234589999999999999998874 88888888766655544332 233 35566655 4
Q ss_pred CCCCCCccEEEecccccccCCCh-HHHHHHHHHcCCCCeEEE
Q 013605 161 PYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWV 201 (439)
Q Consensus 161 p~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~li 201 (439)
+..+++||+|++..+++|+.... ..+++++.+.+++++.+.
T Consensus 122 ~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 122 ESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred hhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 44568899999999888876433 678888888776544433
No 82
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.01 E-value=4.4e-09 Score=106.21 Aligned_cols=117 Identities=16% Similarity=0.165 Sum_probs=83.3
Q ss_pred HHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEecccccCCCC
Q 013605 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYAS 164 (439)
Q Consensus 88 ~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~a~i~~a~e~~~~-~~~~~~d~~~lp~~d 164 (439)
+...+.++....+ +.+|||+|||+|.++..++.. .++++|+++.++..+..+ ++..+.. +.+..+|+..+|+.+
T Consensus 170 la~~~~~l~~~~~--g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~n-l~~~g~~~i~~~~~D~~~l~~~~ 246 (329)
T TIGR01177 170 LARAMVNLARVTE--GDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARIN-LEHYGIEDFFVKRGDATKLPLSS 246 (329)
T ss_pred HHHHHHHHhCCCC--cCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHH-HHHhCCCCCeEEecchhcCCccc
Confidence 3344555544333 448999999999998776665 488999988777655543 3334443 467788998899888
Q ss_pred CCccEEEecccccc---cCC----C-hHHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 165 RAFDMAHCSRCLIP---WGA----N-DGRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 165 ~sFDlV~~~~~l~~---~~~----d-~~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
++||+|+++..+.. ... + ...++.++.++|+|||++++..+..
T Consensus 247 ~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 247 ESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 99999999743311 001 1 2689999999999999999987643
No 83
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.99 E-value=2.2e-09 Score=101.72 Aligned_cols=102 Identities=17% Similarity=0.261 Sum_probs=77.6
Q ss_pred CCEEEEECCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccccCCC-CCCccEEEecccccc
Q 013605 103 VRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYA-SRAFDMAHCSRCLIP 178 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~~--v~~vdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~-d~sFDlV~~~~~l~~ 178 (439)
+.+|||+|||+|.++..+++.+ ++++|+++.++..+..... ..+. ...+...+...++.. .++||+|++..++++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~ 124 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAK-KDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH 124 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH-HcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence 4589999999999999888763 7888887765554443332 3344 466777777666644 478999999988755
Q ss_pred cCCChHHHHHHHHHcCCCCeEEEEEeCC
Q 013605 179 WGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (439)
Q Consensus 179 ~~~d~~~~L~ei~RvLkPGG~liis~p~ 206 (439)
. .++..+++++.++|+|||.++++...
T Consensus 125 ~-~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 125 V-PDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred C-CCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 5 47789999999999999999988653
No 84
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.99 E-value=1.2e-08 Score=98.29 Aligned_cols=117 Identities=20% Similarity=0.268 Sum_probs=81.0
Q ss_pred hHHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEeccc
Q 013605 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI 158 (439)
Q Consensus 84 g~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~-~~~~~~d~~ 158 (439)
....+++.+.+.+.. ...+|||+|||+|.++..++.. .++++|+++..+..+.. .+...+.. +.+..+|..
T Consensus 72 ~~~~l~~~~l~~~~~---~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~-~~~~~~~~~~~~~~~d~~ 147 (251)
T TIGR03534 72 DTEELVEAALERLKK---GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARK-NAARLGLDNVTFLQSDWF 147 (251)
T ss_pred ChHHHHHHHHHhccc---CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCeEEEEECchh
Confidence 345666666666532 2348999999999999999875 48899998866654443 33444444 667777764
Q ss_pred ccCCCCCCccEEEecccccccC------CC-------------------hHHHHHHHHHcCCCCeEEEEEeC
Q 013605 159 KMPYASRAFDMAHCSRCLIPWG------AN-------------------DGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 159 ~lp~~d~sFDlV~~~~~l~~~~------~d-------------------~~~~L~ei~RvLkPGG~liis~p 205 (439)
. ++++++||+|+|+..+.... .+ ...++.++.++|+|||.+++...
T Consensus 148 ~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 148 E-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG 218 (251)
T ss_pred c-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 4 45678999999975443211 00 12578899999999999999753
No 85
>PRK14967 putative methyltransferase; Provisional
Probab=98.98 E-value=1e-08 Score=97.84 Aligned_cols=101 Identities=22% Similarity=0.223 Sum_probs=71.6
Q ss_pred CCEEEEECCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEeccccccc
Q 013605 103 VRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~ 179 (439)
+.+|||+|||+|.++..++.. .++++|+++..+..+.. .+...+..+.+...|... .+++++||+|+++..+.+-
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~-n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARL-NALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPA 114 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHH-HHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCC
Confidence 348999999999999988875 47899998865544433 334445556666666644 3456789999998544322
Q ss_pred CCC--------------------hHHHHHHHHHcCCCCeEEEEEeC
Q 013605 180 GAN--------------------DGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 180 ~~d--------------------~~~~L~ei~RvLkPGG~liis~p 205 (439)
... ...+++++.++|||||.+++...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 115 PPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred CcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 110 14578889999999999998754
No 86
>PLN03075 nicotianamine synthase; Provisional
Probab=98.97 E-value=3.5e-09 Score=104.59 Aligned_cols=102 Identities=9% Similarity=0.188 Sum_probs=76.0
Q ss_pred CCCEEEEECCCCchHHHHHhh--C----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccccCCCCCCccEEEec
Q 013605 102 TVRTALDTGCGVASWGAYLWS--R----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCS 173 (439)
Q Consensus 102 ~~~~VLDIGCG~G~~~~~La~--~----~v~~vdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~d~sFDlV~~~ 173 (439)
.+++|+|||||.|.++..++. . .++++|+++..+..+........++ .+.|..+|+...+-..+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 345899999998865544332 2 2889999986666555444333333 4788888886654335789999999
Q ss_pred ccccccC-CChHHHHHHHHHcCCCCeEEEEEe
Q 013605 174 RCLIPWG-ANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 174 ~~l~~~~-~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
+++++. +++..+++++.+.|+|||++++..
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 888885 566999999999999999999975
No 87
>PRK04266 fibrillarin; Provisional
Probab=98.95 E-value=6.3e-09 Score=99.65 Aligned_cols=103 Identities=22% Similarity=0.207 Sum_probs=71.7
Q ss_pred hcCCCCCCCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc----cCCCCCC
Q 013605 95 VIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK----MPYASRA 166 (439)
Q Consensus 95 ~l~~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~----lp~~d~s 166 (439)
.+...++ .+|||+|||+|.++..+++. .|.++|+++.++.... +.++++ .++.+..+|+.. .++. .+
T Consensus 67 ~l~i~~g--~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~-~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~ 141 (226)
T PRK04266 67 NFPIKKG--SKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL-EVAEER-KNIIPILADARKPERYAHVV-EK 141 (226)
T ss_pred hCCCCCC--CEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH-HHhhhc-CCcEEEECCCCCcchhhhcc-cc
Confidence 4554444 49999999999999999886 3999999987765443 344443 345666677643 1223 56
Q ss_pred ccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 167 FDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 167 FDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
||+|++... .+.....+++++.|+|||||.++++.+
T Consensus 142 ~D~i~~d~~---~p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 142 VDVIYQDVA---QPNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred CCEEEECCC---ChhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 999997532 111124568999999999999999754
No 88
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.95 E-value=2.6e-09 Score=99.64 Aligned_cols=114 Identities=18% Similarity=0.257 Sum_probs=85.0
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecc-cccCC
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT-IKMPY 162 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~--v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~-~~lp~ 162 (439)
.++.+.-.+++.+..+...-|||||||+|..+..|.+.| ++++|||+.|++.++ ++-++..+..+|. +.+||
T Consensus 34 ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~-----~~e~egdlil~DMG~Glpf 108 (270)
T KOG1541|consen 34 AEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAV-----ERELEGDLILCDMGEGLPF 108 (270)
T ss_pred HHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHH-----HhhhhcCeeeeecCCCCCC
Confidence 444555666666665566789999999999999999886 788888887665544 3333445566665 88999
Q ss_pred CCCCccEEEecccccccCC-------Ch----HHHHHHHHHcCCCCeEEEEEeC
Q 013605 163 ASRAFDMAHCSRCLIPWGA-------ND----GRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 163 ~d~sFDlV~~~~~l~~~~~-------d~----~~~L~ei~RvLkPGG~liis~p 205 (439)
..++||.|++..++ .|.- ++ -.++..++.+|++|+..++-.-
T Consensus 109 rpGtFDg~ISISAv-QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 109 RPGTFDGVISISAV-QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred CCCccceEEEeeee-eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence 99999999987655 4431 22 2578889999999999998753
No 89
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.95 E-value=3.7e-09 Score=106.61 Aligned_cols=106 Identities=21% Similarity=0.319 Sum_probs=73.0
Q ss_pred CCCEEEEECCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHH------c----CCCeEEEEecccc------cCC
Q 013605 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALE------R----GVPAVIGVLGTIK------MPY 162 (439)
Q Consensus 102 ~~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~a~i~~a~e------~----~~~~~~~~~d~~~------lp~ 162 (439)
.+.+|||+|||-|..+...... .++++|++...+.++..+...- + ...+.+..+|... ++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 4569999999999888777776 3889999887666655544210 0 1245666666532 222
Q ss_pred CCCCccEEEecccccccCCCh---HHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 163 ASRAFDMAHCSRCLIPWGAND---GRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 163 ~d~sFDlV~~~~~l~~~~~d~---~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
....||+|-|.+++|+..... ..+|.++...|+|||+|+.+.|..
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 235999999999998777665 468999999999999999998743
No 90
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.95 E-value=1.3e-09 Score=92.42 Aligned_cols=101 Identities=23% Similarity=0.388 Sum_probs=72.0
Q ss_pred CEEEEECCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccccC--CCCCCccEEEecccc
Q 013605 104 RTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMP--YASRAFDMAHCSRCL 176 (439)
Q Consensus 104 ~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp--~~d~sFDlV~~~~~l 176 (439)
.+|||+|||+|.++..+++. .++++|+++..+..+... ....+. +..+.++|..... +++++||+|+++..+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~-~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRN-LPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHH-CHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHH-HHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 48999999999999988865 478888887543333322 222332 4788888986665 788999999998866
Q ss_pred cccCCC-------hHHHHHHHHHcCCCCeEEEEEeC
Q 013605 177 IPWGAN-------DGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 177 ~~~~~d-------~~~~L~ei~RvLkPGG~liis~p 205 (439)
...... ...+++++.++|||||.+++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 533211 15789999999999999998754
No 91
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.93 E-value=2.3e-09 Score=101.34 Aligned_cols=92 Identities=22% Similarity=0.285 Sum_probs=67.1
Q ss_pred CEEEEECCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEE-----EEecccccCCC--CCCccEEEecc
Q 013605 104 RTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVI-----GVLGTIKMPYA--SRAFDMAHCSR 174 (439)
Q Consensus 104 ~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~a~i~~a~e~~~~~~~-----~~~d~~~lp~~--d~sFDlV~~~~ 174 (439)
+.++|+|||+|.-+..+++. .|+++|+++ +|++.|.+.- ++.. ...+.+..++. ++|.|+|+|..
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~-----~mL~~a~k~~-~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSE-----AMLKVAKKHP-PVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecCCH-----HHHHHhhcCC-CcccccCCccccccccccccCCCcceeeehhhh
Confidence 38999999999777777776 699998876 5666666543 2222 12222333443 89999999999
Q ss_pred cccccCCChHHHHHHHHHcCCCCe-EEEEE
Q 013605 175 CLIPWGANDGRYMIEVDRVLRPGG-YWVLS 203 (439)
Q Consensus 175 ~l~~~~~d~~~~L~ei~RvLkPGG-~liis 203 (439)
|+ ||. +...+++++.|+||+.| .+.+-
T Consensus 109 a~-HWF-dle~fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 109 AV-HWF-DLERFYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred hH-Hhh-chHHHHHHHHHHcCCCCCEEEEE
Confidence 88 887 67999999999999877 55553
No 92
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.92 E-value=1.1e-08 Score=102.22 Aligned_cols=110 Identities=17% Similarity=0.186 Sum_probs=77.7
Q ss_pred HHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEecccccCCC
Q 013605 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKMPYA 163 (439)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~--~~~~~~d~~~lp~~ 163 (439)
+.+.+.+... ...+|||||||+|.++..++++ .++++|+ +..+. ...+.+.+.+.. +.+..+|....+++
T Consensus 139 ~~l~~~~~~~--~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~-~a~~~~~~~gl~~rv~~~~~d~~~~~~~ 214 (306)
T TIGR02716 139 QLLLEEAKLD--GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAID-LVNENAAEKGVADRMRGIAVDIYKESYP 214 (306)
T ss_pred HHHHHHcCCC--CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHH-HHHHHHHhCCccceEEEEecCccCCCCC
Confidence 3344444333 3459999999999999999887 2667776 33332 223344445543 56677777655555
Q ss_pred CCCccEEEecccccccCCCh-HHHHHHHHHcCCCCeEEEEEeC
Q 013605 164 SRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 164 d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~liis~p 205 (439)
. +|+|+++.++++|.++. ..+++++.+.|+|||.+++.+.
T Consensus 215 ~--~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 215 E--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred C--CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 3 69999999888886544 6899999999999999999863
No 93
>PRK14968 putative methyltransferase; Provisional
Probab=98.91 E-value=2.4e-08 Score=91.60 Aligned_cols=101 Identities=20% Similarity=0.285 Sum_probs=70.6
Q ss_pred CCEEEEECCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC---eEEEEecccccCCCCCCccEEEeccccc
Q 013605 103 VRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP---AVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~a~i~~a~e~~~~---~~~~~~d~~~lp~~d~sFDlV~~~~~l~ 177 (439)
+.+|||+|||+|.++..++.. .++++|+++.++..++.. ....+.. +.+...|... ++.+++||+|+++..+.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~-~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~ 101 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCN-AKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYL 101 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHH-HHHcCCCCcceEEEeccccc-cccccCceEEEECCCcC
Confidence 348999999999999999877 488899988655544433 3333333 5566666533 34556899999876543
Q ss_pred ccCC----------------C----hHHHHHHHHHcCCCCeEEEEEeC
Q 013605 178 PWGA----------------N----DGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 178 ~~~~----------------d----~~~~L~ei~RvLkPGG~liis~p 205 (439)
+..+ + ...+++++.++|||||.+++..+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 3110 0 24578999999999999988765
No 94
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.91 E-value=8.4e-09 Score=102.92 Aligned_cols=103 Identities=9% Similarity=0.093 Sum_probs=71.8
Q ss_pred CCEEEEECCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHc-CCCeEEEEecccc-cCCCCC----CccEEE
Q 013605 103 VRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIK-MPYASR----AFDMAH 171 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~a~i~~a~e~-~~~~~~~~~d~~~-lp~~d~----sFDlV~ 171 (439)
+.+|||+|||+|..+..|++. .++++|+|+.++..++.+..... ++++...++|... ++++.. ...+++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 348999999999999988865 48999999887777666544332 3445667788754 444433 233444
Q ss_pred ecccccccCCCh-HHHHHHHHHcCCCCeEEEEEeC
Q 013605 172 CSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 172 ~~~~l~~~~~d~-~~~L~ei~RvLkPGG~liis~p 205 (439)
+..++.++..+. ..+|+++.++|+|||.|++...
T Consensus 144 ~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 144 PGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred ecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 444554554322 6899999999999999999753
No 95
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.91 E-value=1.2e-08 Score=96.35 Aligned_cols=110 Identities=16% Similarity=0.096 Sum_probs=73.6
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccccCC
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPY 162 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~ 162 (439)
......+.+.+...+ +.+|||+|||+|.++..|+.. .++++|+++..+..+...+ ...+. .+.+..+|......
T Consensus 64 p~~~~~l~~~l~~~~--~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~~~ 140 (212)
T PRK00312 64 PYMVARMTELLELKP--GDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRL-KQLGLHNVSVRHGDGWKGWP 140 (212)
T ss_pred HHHHHHHHHhcCCCC--CCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHH-HHCCCCceEEEECCcccCCC
Confidence 334455566665443 348999999999999877765 4888998875554444333 23333 36666666543222
Q ss_pred CCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 163 ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 163 ~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
+.++||+|++..+..+ +..++.+.|+|||.+++...
T Consensus 141 ~~~~fD~I~~~~~~~~-------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 141 AYAPFDRILVTAAAPE-------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred cCCCcCEEEEccCchh-------hhHHHHHhcCCCcEEEEEEc
Confidence 3478999999765422 34667899999999998754
No 96
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.91 E-value=3.1e-08 Score=92.69 Aligned_cols=99 Identities=17% Similarity=0.106 Sum_probs=70.7
Q ss_pred CCCEEEEECCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccc-cCCCCCCccEEEec
Q 013605 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIK-MPYASRAFDMAHCS 173 (439)
Q Consensus 102 ~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~-lp~~d~sFDlV~~~ 173 (439)
.+.+|||+|||+|.++..++.. .++++|+++.++..++. .++..++ .+.+..+|... ++..+++||+|++.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~-n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~ 118 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRR-NAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIG 118 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence 3448999999999999887652 38999999866554443 3444442 45666667654 33334689999985
Q ss_pred ccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 174 RCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 174 ~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
.. ..+...+++++.++|+|||++++...
T Consensus 119 ~~----~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 119 GG----SEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CC----cccHHHHHHHHHHHcCCCcEEEEEee
Confidence 42 23557899999999999999998643
No 97
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.89 E-value=9.6e-09 Score=95.76 Aligned_cols=101 Identities=23% Similarity=0.272 Sum_probs=70.3
Q ss_pred HHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc-c-CCCC
Q 013605 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK-M-PYAS 164 (439)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~-l-p~~d 164 (439)
+.+.+.++ .+.+|||+|||+|.++..+++. .++++|+++ .+++.+.+++ ..+..+++.. + ++++
T Consensus 5 ~~i~~~i~----~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~-----~~i~~a~~~~--~~~~~~d~~~~l~~~~~ 73 (194)
T TIGR02081 5 ESILNLIP----PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQ-----DGVLACVARG--VNVIQGDLDEGLEAFPD 73 (194)
T ss_pred HHHHHhcC----CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCH-----HHHHHHHHcC--CeEEEEEhhhcccccCC
Confidence 34555552 2348999999999999988765 256777665 4444555554 3555667644 4 4778
Q ss_pred CCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 165 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
++||+|+|+.+++|. .++..+++++.|++++ .+++.|
T Consensus 74 ~sfD~Vi~~~~l~~~-~d~~~~l~e~~r~~~~---~ii~~p 110 (194)
T TIGR02081 74 KSFDYVILSQTLQAT-RNPEEILDEMLRVGRH---AIVSFP 110 (194)
T ss_pred CCcCEEEEhhHhHcC-cCHHHHHHHHHHhCCe---EEEEcC
Confidence 899999999988665 4788999999887654 455544
No 98
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.89 E-value=8e-09 Score=83.15 Aligned_cols=99 Identities=25% Similarity=0.309 Sum_probs=71.0
Q ss_pred EEEEECCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCC-CCCCccEEEecccccccC
Q 013605 105 TALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPY-ASRAFDMAHCSRCLIPWG 180 (439)
Q Consensus 105 ~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~-~d~sFDlV~~~~~l~~~~ 180 (439)
++||+|||+|.++..++.. .+.++|+++..+..+.............+...+...... ..++||+|++..++.++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 4899999999999998873 488888877544333211111122345666677655543 567899999998775534
Q ss_pred CChHHHHHHHHHcCCCCeEEEEE
Q 013605 181 ANDGRYMIEVDRVLRPGGYWVLS 203 (439)
Q Consensus 181 ~d~~~~L~ei~RvLkPGG~liis 203 (439)
.....+++.+.+.|+|||.++++
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 45689999999999999999986
No 99
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.88 E-value=5.6e-08 Score=90.73 Aligned_cols=112 Identities=17% Similarity=0.062 Sum_probs=74.7
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccc-
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIK- 159 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~- 159 (439)
......+.+.+.... +.+|||+|||+|.++..++.. .++++|+++.++..++. .+.+.+. .+.+..+|+..
T Consensus 26 ~~v~~~l~~~l~~~~--~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~-n~~~~~~~~v~~~~~d~~~~ 102 (196)
T PRK07402 26 REVRLLLISQLRLEP--DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRR-NCDRFGVKNVEVIEGSAPEC 102 (196)
T ss_pred HHHHHHHHHhcCCCC--CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCCeEEEECchHHH
Confidence 344445566665433 348999999999999888753 48999999866655443 3333443 35666666633
Q ss_pred cCCCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 160 MPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 160 lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
++.....+|.|+... ..+...+++++.++|+|||.+++..+
T Consensus 103 ~~~~~~~~d~v~~~~-----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 103 LAQLAPAPDRVCIEG-----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred HhhCCCCCCEEEEEC-----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 332223467765532 22347899999999999999999865
No 100
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.86 E-value=1.5e-09 Score=101.78 Aligned_cols=99 Identities=23% Similarity=0.377 Sum_probs=78.8
Q ss_pred CCCCEEEEECCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccc-ccC-CCCCCccEEEecccc
Q 013605 101 GTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KMP-YASRAFDMAHCSRCL 176 (439)
Q Consensus 101 ~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~-~lp-~~d~sFDlV~~~~~l 176 (439)
+..+++||+|||||..+..|.+. .++++|| |++++..|.+++.-..+.++++. .++ ..+..||+|.+..++
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDi-----S~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl 198 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMADRLTGVDI-----SENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVL 198 (287)
T ss_pred CccceeeecccCcCcccHhHHHHHhhccCCch-----hHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHH
Confidence 34689999999999999988876 4666655 56777888888876666666664 333 557789999999988
Q ss_pred cccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 177 IPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 177 ~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
.+..+.+.++.-+...|+|||.|.||+.
T Consensus 199 -~YlG~Le~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 199 -PYLGALEGLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred -HhhcchhhHHHHHHHhcCCCceEEEEec
Confidence 4445778999999999999999999873
No 101
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.84 E-value=3.7e-08 Score=94.81 Aligned_cols=125 Identities=21% Similarity=0.310 Sum_probs=85.8
Q ss_pred CCCcchHHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcC-CCeEEE
Q 013605 79 TQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERG-VPAVIG 153 (439)
Q Consensus 79 ~~f~~g~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~-~~~~~~ 153 (439)
..|.-+.+..+ |........ ..+|||+|||+|..+..++++ .++++++++.+...++...+...- ..+.+.
T Consensus 25 ~~~~~~~DaiL--L~~~~~~~~--~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~ 100 (248)
T COG4123 25 CGFRYGTDAIL--LAAFAPVPK--KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVI 100 (248)
T ss_pred CccccccHHHH--HHhhccccc--CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEe
Confidence 34555555553 555554333 458999999999999999988 488888887666555554444221 236677
Q ss_pred EecccccC--CCCCCccEEEecccccccCCC-----------------hHHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 154 VLGTIKMP--YASRAFDMAHCSRCLIPWGAN-----------------DGRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 154 ~~d~~~lp--~~d~sFDlV~~~~~l~~~~~d-----------------~~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
+.|+..+. ....+||+|+|+..+..-... .+.+++...++|||||++.+..++.
T Consensus 101 ~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e 173 (248)
T COG4123 101 EADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE 173 (248)
T ss_pred hhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH
Confidence 77876553 344579999998765432222 2467888999999999999997643
No 102
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.81 E-value=8.6e-09 Score=101.03 Aligned_cols=106 Identities=19% Similarity=0.216 Sum_probs=76.0
Q ss_pred CCCEEEEECCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHH--c----CCCeEEEEecc------cccCCCCCC
Q 013605 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALE--R----GVPAVIGVLGT------IKMPYASRA 166 (439)
Q Consensus 102 ~~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~a~i~~a~e--~----~~~~~~~~~d~------~~lp~~d~s 166 (439)
.+..+||+|||.|..+...... .++++||+..-+.+++.+.-.- + -..+.|..+|. +.+++++.+
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence 3457999999999888777666 3788888765444443332111 1 12467777774 335566777
Q ss_pred ccEEEecccccccCCCh---HHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 167 FDMAHCSRCLIPWGAND---GRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 167 FDlV~~~~~l~~~~~d~---~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
||+|-|.+|+|...... ..+|.++.+.|||||+||-+.|..
T Consensus 197 fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 197 FDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred cceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 99999999997554433 678999999999999999998854
No 103
>PTZ00146 fibrillarin; Provisional
Probab=98.81 E-value=2.5e-08 Score=98.24 Aligned_cols=98 Identities=14% Similarity=0.097 Sum_probs=70.2
Q ss_pred CCCEEEEECCCCchHHHHHhhC----C-cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc---cCCCCCCccEEEec
Q 013605 102 TVRTALDTGCGVASWGAYLWSR----N-VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK---MPYASRAFDMAHCS 173 (439)
Q Consensus 102 ~~~~VLDIGCG~G~~~~~La~~----~-v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~---lp~~d~sFDlV~~~ 173 (439)
++.+|||+|||+|.++.++++. + |.++|+++.+. +.+++.+.++ ..+.+...|+.. +.....+||+|++.
T Consensus 132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~-~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSG-RDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHH-HHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 3459999999999999999986 2 99999986433 3445555544 346666777642 22234589999997
Q ss_pred ccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 174 RCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 174 ~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
.. .+++...++.++.++|||||+|++..
T Consensus 210 va---~pdq~~il~~na~r~LKpGG~~vI~i 237 (293)
T PTZ00146 210 VA---QPDQARIVALNAQYFLKNGGHFIISI 237 (293)
T ss_pred CC---CcchHHHHHHHHHHhccCCCEEEEEE
Confidence 63 12233567789999999999999963
No 104
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.80 E-value=3.4e-08 Score=94.98 Aligned_cols=154 Identities=21% Similarity=0.219 Sum_probs=102.7
Q ss_pred cCCCCCCCcchHHHHHHHHHhh-cCCCC-CCCCEEEEECCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC
Q 013605 74 FPGGGTQFPQGADKYIDQLASV-IPIKN-GTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP 149 (439)
Q Consensus 74 fp~~~~~f~~g~~~~i~~l~~~-l~~~~-~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~a~i~~a~e~~~~ 149 (439)
+.|-|.+|--..+++.+.+..- ..... ....++||||+|.|..+..|+.. .|.++++|+. |+...+++|..
T Consensus 64 ~LgRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~-----Mr~rL~~kg~~ 138 (265)
T PF05219_consen 64 ILGRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPP-----MRWRLSKKGFT 138 (265)
T ss_pred hhcCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHH-----HHHHHHhCCCe
Confidence 5667777766666665554422 11111 13468999999999999999886 6888888774 44455566653
Q ss_pred eEEEEecccccCCCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEe--CCCCcccccc-ccCCChHHHHHH
Q 013605 150 AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG--PPINWKTNYK-AWQRPKEELQEE 226 (439)
Q Consensus 150 ~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~--p~~~~~~~~~-~~~~~~e~l~~~ 226 (439)
+.+..++.-.+.+||+|.|.+++-. ..+|..+|++|.+.|+|+|.++++. |-..+.+.-. .+.++.+.+.-.
T Consensus 139 ----vl~~~~w~~~~~~fDvIscLNvLDR-c~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~ 213 (265)
T PF05219_consen 139 ----VLDIDDWQQTDFKFDVISCLNVLDR-CDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVK 213 (265)
T ss_pred ----EEehhhhhccCCceEEEeehhhhhc-cCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCC
Confidence 2233334434568999999998844 4578999999999999999999975 5444544433 355555555443
Q ss_pred HHHHHHHHHhc
Q 013605 227 QRKIEEIANLL 237 (439)
Q Consensus 227 ~~~l~~l~~~l 237 (439)
-...++...++
T Consensus 214 g~~~E~~v~~l 224 (265)
T PF05219_consen 214 GATFEEQVSSL 224 (265)
T ss_pred CCcHHHHHHHH
Confidence 34555655555
No 105
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.80 E-value=5.5e-08 Score=90.18 Aligned_cols=92 Identities=17% Similarity=0.163 Sum_probs=64.9
Q ss_pred CCEEEEECCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccC--------CCCCCccE
Q 013605 103 VRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--------YASRAFDM 169 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp--------~~d~sFDl 169 (439)
+.+|||+|||+|.++..++.+ .++++|+++.. ....+.+..+|....+ +++++||+
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~ 101 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDV 101 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCccE
Confidence 448999999999999888764 28999998742 1123556666664432 45678999
Q ss_pred EEeccccc---ccCCC-------hHHHHHHHHHcCCCCeEEEEEeC
Q 013605 170 AHCSRCLI---PWGAN-------DGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 170 V~~~~~l~---~~~~d-------~~~~L~ei~RvLkPGG~liis~p 205 (439)
|++..+.+ .+..+ ...++.++.++|+|||++++...
T Consensus 102 V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 102 VMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred EEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 99865321 11111 25789999999999999999753
No 106
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.79 E-value=1.1e-07 Score=93.06 Aligned_cols=116 Identities=20% Similarity=0.239 Sum_probs=75.7
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccC
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP 161 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp 161 (439)
+.+++.+...+... ...+|||+|||+|.++..++.. .++++|+++..+..+...........+.+..+|... +
T Consensus 94 e~l~~~~~~~~~~~--~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~ 170 (275)
T PRK09328 94 EELVEWALEALLLK--EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-P 170 (275)
T ss_pred HHHHHHHHHhcccc--CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-c
Confidence 45555555444322 3348999999999999999875 488999988665544443321122346667666632 2
Q ss_pred CCCCCccEEEecccccccCC-------------------------ChHHHHHHHHHcCCCCeEEEEEe
Q 013605 162 YASRAFDMAHCSRCLIPWGA-------------------------NDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 162 ~~d~sFDlV~~~~~l~~~~~-------------------------d~~~~L~ei~RvLkPGG~liis~ 204 (439)
+++++||+|+++..+..... ....++.++.++|+|||++++..
T Consensus 171 ~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 171 LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 33578999999754321100 01457788889999999999965
No 107
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.79 E-value=1.6e-07 Score=96.79 Aligned_cols=115 Identities=15% Similarity=0.166 Sum_probs=78.0
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccC
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP 161 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp 161 (439)
+.+++.+.+.+. ...+|||+|||+|.++..++.. .++++|+|+.++..++. .+...+..+.+..+|.....
T Consensus 239 E~LVe~aL~~l~----~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~Are-Na~~~g~rV~fi~gDl~e~~ 313 (423)
T PRK14966 239 EHLVEAVLARLP----ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARK-NAADLGARVEFAHGSWFDTD 313 (423)
T ss_pred HHHHHHhhhccC----CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCcEEEEEcchhccc
Confidence 455555555442 2248999999999999988753 48899999876655544 34445566778888874433
Q ss_pred C-CCCCccEEEecccccccCC--------------------Ch----HHHHHHHHHcCCCCeEEEEEeC
Q 013605 162 Y-ASRAFDMAHCSRCLIPWGA--------------------ND----GRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 162 ~-~d~sFDlV~~~~~l~~~~~--------------------d~----~~~L~ei~RvLkPGG~liis~p 205 (439)
+ ..++||+|+|+...+.-.+ +. ..++.++.+.|+|||.+++...
T Consensus 314 l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG 382 (423)
T PRK14966 314 MPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG 382 (423)
T ss_pred cccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 3 2457999999875432110 11 2566777889999999998754
No 108
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.76 E-value=3.7e-07 Score=90.45 Aligned_cols=100 Identities=15% Similarity=0.127 Sum_probs=70.6
Q ss_pred CEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccccCCCCCCccEEEeccccc
Q 013605 104 RTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (439)
Q Consensus 104 ~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~d~sFDlV~~~~~l~ 177 (439)
.+|||+|||+|.++..++.. .++++|+++..+..+.. .+...+. .+.+..+|... ++++++||+|+++....
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~-n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEI-NIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCC
Confidence 48999999999999999875 48899998866655444 4444454 36677777632 23456899999974322
Q ss_pred ccC----------C----------C----hHHHHHHHHHcCCCCeEEEEEeC
Q 013605 178 PWG----------A----------N----DGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 178 ~~~----------~----------d----~~~~L~ei~RvLkPGG~liis~p 205 (439)
... . + ...++.++.++|+|||.+++...
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 110 0 0 14668889999999999998764
No 109
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.76 E-value=2.1e-07 Score=92.09 Aligned_cols=117 Identities=16% Similarity=0.159 Sum_probs=77.2
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEecccc
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIK 159 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~--~~~~~~d~~~ 159 (439)
+.+++.+.+.+... ....+|||+|||+|.++..++.. .++++|+++..+..+.. .+...+.. +.+..+|...
T Consensus 99 e~lv~~~l~~~~~~-~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~-n~~~~~~~~~v~~~~~d~~~ 176 (284)
T TIGR00536 99 EELVEKALASLISQ-NPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEE-NAEKNQLEHRVEFIQSNLFE 176 (284)
T ss_pred HHHHHHHHHHhhhc-CCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECchhc
Confidence 55555555443211 11248999999999999999874 48999998865554444 34444443 6677777643
Q ss_pred cCCCCCCccEEEecccccccC------------C------------ChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 160 MPYASRAFDMAHCSRCLIPWG------------A------------NDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 160 lp~~d~sFDlV~~~~~l~~~~------------~------------d~~~~L~ei~RvLkPGG~liis~p 205 (439)
++++++||+|+++...+... + ....++.++.+.|+|||++++...
T Consensus 177 -~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 177 -PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred -cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 34455899999974332110 0 114678889999999999999865
No 110
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.75 E-value=2.2e-08 Score=90.75 Aligned_cols=78 Identities=21% Similarity=0.175 Sum_probs=61.1
Q ss_pred EEeCCccchHHHHHHHHHHc---CCCeEEEEecccccCCCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEE
Q 013605 127 AMSFAPRDSHEAQVQFALER---GVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (439)
Q Consensus 127 ~vdis~~dis~a~i~~a~e~---~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis 203 (439)
++|+|+.|+..+..+...+. ...+.+.++|+..+|+++++||+|++..+++++ ++...+++|+.|+|||||.+++.
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~-~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV-VDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC-CCHHHHHHHHHHHcCcCeEEEEE
Confidence 67888777665543322111 124788999999999999999999999988555 58899999999999999999987
Q ss_pred eC
Q 013605 204 GP 205 (439)
Q Consensus 204 ~p 205 (439)
+.
T Consensus 81 d~ 82 (160)
T PLN02232 81 DF 82 (160)
T ss_pred EC
Confidence 53
No 111
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.75 E-value=6.7e-09 Score=97.37 Aligned_cols=100 Identities=20% Similarity=0.249 Sum_probs=80.9
Q ss_pred CCEEEEECCCCchHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEeccccccc
Q 013605 103 VRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~~---v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~ 179 (439)
..+++|||||.|....+|...+ ++.+|.|..|+... +-+...++.....+.|-+.|+|.+++||+|+++..+ ||
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~--~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl-HW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSC--RDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL-HW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHh--hccCCCceEEEEEecchhcccccccchhhhhhhhhh-hh
Confidence 3479999999999999999985 67777776444221 123334556677888999999999999999999877 99
Q ss_pred CCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 180 GANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 180 ~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
..+....+..+...|||+|.|+-+.-
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~Fiasml 175 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASML 175 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHHh
Confidence 98888999999999999999998753
No 112
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.74 E-value=1.7e-08 Score=95.50 Aligned_cols=118 Identities=20% Similarity=0.333 Sum_probs=82.4
Q ss_pred chHHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC------CcEEEeCCccchHHHHHHHHHHcC------CCe
Q 013605 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR------NVIAMSFAPRDSHEAQVQFALERG------VPA 150 (439)
Q Consensus 83 ~g~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~------~v~~vdis~~dis~a~i~~a~e~~------~~~ 150 (439)
...+-+....-+++........+||+||||.|.....+++- .+.++|+||..+ +..++.. ..+
T Consensus 52 kdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai-----~~vk~~~~~~e~~~~a 126 (264)
T KOG2361|consen 52 KDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAI-----ELVKKSSGYDESRVEA 126 (264)
T ss_pred chhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHH-----HHHHhccccchhhhcc
Confidence 44455556666666544433348999999999988888775 378888888543 3333221 112
Q ss_pred EEEEeccc--ccCCCCCCccEEEecccccccCCCh-HHHHHHHHHcCCCCeEEEEEeC
Q 013605 151 VIGVLGTI--KMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 151 ~~~~~d~~--~lp~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~liis~p 205 (439)
.+...+.. .-|...+++|+|++.+++....++. ..++.++.++|||||.+++.+-
T Consensus 127 fv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 127 FVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred cceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 22222222 3356789999999999998887776 8999999999999999999864
No 113
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.73 E-value=9.6e-08 Score=96.05 Aligned_cols=108 Identities=11% Similarity=0.068 Sum_probs=73.7
Q ss_pred HHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEeccccc
Q 013605 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKM 160 (439)
Q Consensus 87 ~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~a~i~~a~e~~~~-~~~~~~d~~~l 160 (439)
.+...+.+.+...++ .+|||||||+|.++..+++. .|+++|+++.++..+.. .+.+.+.. +.+..+|....
T Consensus 67 ~l~a~ll~~L~i~~g--~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~-~l~~~g~~nV~~i~gD~~~~ 143 (322)
T PRK13943 67 SLMALFMEWVGLDKG--MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR-NVRRLGIENVIFVCGDGYYG 143 (322)
T ss_pred HHHHHHHHhcCCCCC--CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH-HHHHcCCCcEEEEeCChhhc
Confidence 344555566654433 48999999999999998874 28899998865554443 33444443 56667776555
Q ss_pred CCCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 161 p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
+...++||+|++.....+ ....+.++|+|||.+++..
T Consensus 144 ~~~~~~fD~Ii~~~g~~~-------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 144 VPEFAPYDVIFVTVGVDE-------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccccCCccEEEECCchHH-------hHHHHHHhcCCCCEEEEEe
Confidence 545578999998754322 2345778999999998864
No 114
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.72 E-value=4.4e-08 Score=92.70 Aligned_cols=111 Identities=18% Similarity=0.165 Sum_probs=72.2
Q ss_pred HHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC----C-cEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccc
Q 013605 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----N-VIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI 158 (439)
Q Consensus 85 ~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~----~-v~~vdis~~dis~a~i~~a~e~~~-~~~~~~~d~~ 158 (439)
.......+.+.+...++. +|||||||+|++++.|+.. + |+++|+.+. +.+.+.+.....+. ++.+.++|..
T Consensus 57 ~P~~~a~~l~~L~l~pg~--~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~-l~~~A~~~l~~~~~~nv~~~~gdg~ 133 (209)
T PF01135_consen 57 APSMVARMLEALDLKPGD--RVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPE-LAERARRNLARLGIDNVEVVVGDGS 133 (209)
T ss_dssp -HHHHHHHHHHTTC-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHH-HHHHHHHHHHHHTTHSEEEEES-GG
T ss_pred HHHHHHHHHHHHhcCCCC--EEEEecCCCcHHHHHHHHhcCccceEEEECccHH-HHHHHHHHHHHhccCceeEEEcchh
Confidence 345556777888766555 9999999999999888864 3 789999884 33333333333344 5677777764
Q ss_pred ccCCCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 159 KMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 159 ~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
.---..+.||.|++.......+ ..+.+.|++||++++-..
T Consensus 134 ~g~~~~apfD~I~v~~a~~~ip-------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 134 EGWPEEAPFDRIIVTAAVPEIP-------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GTTGGG-SEEEEEESSBBSS---------HHHHHTEEEEEEEEEEES
T ss_pred hccccCCCcCEEEEeeccchHH-------HHHHHhcCCCcEEEEEEc
Confidence 3222356899999987553222 557788999999999754
No 115
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.70 E-value=4.6e-08 Score=91.30 Aligned_cols=98 Identities=20% Similarity=0.323 Sum_probs=62.1
Q ss_pred HHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCcc
Q 013605 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFD 168 (439)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~-~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFD 168 (439)
+.+.+.+... +....|-|+|||.+.++..+... .|...|+... ...+..+|+..+|+++++.|
T Consensus 61 d~iI~~l~~~-~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~---------------n~~Vtacdia~vPL~~~svD 124 (219)
T PF05148_consen 61 DVIIEWLKKR-PKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAP---------------NPRVTACDIANVPLEDESVD 124 (219)
T ss_dssp HHHHHHHCTS--TTS-EEEES-TT-HHHHH--S---EEEEESS-S---------------STTEEES-TTS-S--TT-EE
T ss_pred HHHHHHHHhc-CCCEEEEECCCchHHHHHhcccCceEEEeeccCC---------------CCCEEEecCccCcCCCCcee
Confidence 4556666433 33458999999999999776543 4777777431 12366789999999999999
Q ss_pred EEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 169 MAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 169 lV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
++++..++ ...+...++.|+.|+|||||.+.|..-
T Consensus 125 v~VfcLSL--MGTn~~~fi~EA~RvLK~~G~L~IAEV 159 (219)
T PF05148_consen 125 VAVFCLSL--MGTNWPDFIREANRVLKPGGILKIAEV 159 (219)
T ss_dssp EEEEES-----SS-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEEhhh--hCCCcHHHHHHHHheeccCcEEEEEEe
Confidence 99987665 345678999999999999999999864
No 116
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.69 E-value=6.9e-08 Score=88.05 Aligned_cols=106 Identities=14% Similarity=0.118 Sum_probs=71.8
Q ss_pred HHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCc
Q 013605 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAF 167 (439)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sF 167 (439)
+.+.+.+....+ .+|||+|||+|.++..++++ .++++|+++.++...+..... ...+.+..+|+..+++++.+|
T Consensus 3 ~~i~~~~~~~~~--~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 3 DKIVRAANLRPG--DTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHHhcCCCCc--CEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCC
Confidence 455566644333 48999999999999999987 488999987544433322211 234678888998888887789
Q ss_pred cEEEecccccccCCChHHHHHHHHHc--CCCCeEEEEE
Q 013605 168 DMAHCSRCLIPWGANDGRYMIEVDRV--LRPGGYWVLS 203 (439)
Q Consensus 168 DlV~~~~~l~~~~~d~~~~L~ei~Rv--LkPGG~liis 203 (439)
|.|+++..+ +.. ...+..+.+. +.++|++++.
T Consensus 79 d~vi~n~Py-~~~---~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 79 YKVVGNLPY-NIS---TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred CEEEECCCc-ccH---HHHHHHHHhcCCCcceEEEEEE
Confidence 999998644 322 3344444432 4588888885
No 117
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.7e-07 Score=87.86 Aligned_cols=108 Identities=16% Similarity=0.167 Sum_probs=74.1
Q ss_pred HHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccc-ccCC
Q 013605 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KMPY 162 (439)
Q Consensus 87 ~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~a~i~~a~e~~~-~~~~~~~d~~-~lp~ 162 (439)
.....+.+.+...++. +|||||||+|+.++-|++. .|.+++..+. +.+.+.+.....|. ++.+.++|.. .+|
T Consensus 59 ~~vA~m~~~L~~~~g~--~VLEIGtGsGY~aAvla~l~~~V~siEr~~~-L~~~A~~~L~~lg~~nV~v~~gDG~~G~~- 134 (209)
T COG2518 59 HMVARMLQLLELKPGD--RVLEIGTGSGYQAAVLARLVGRVVSIERIEE-LAEQARRNLETLGYENVTVRHGDGSKGWP- 134 (209)
T ss_pred HHHHHHHHHhCCCCCC--eEEEECCCchHHHHHHHHHhCeEEEEEEcHH-HHHHHHHHHHHcCCCceEEEECCcccCCC-
Confidence 3445677777666655 9999999999999999987 4788877663 33333333334455 4556666652 333
Q ss_pred CCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 163 ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 163 ~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
+.+.||.|+...+....+ +.+.+.||+||.+++-..
T Consensus 135 ~~aPyD~I~Vtaaa~~vP-------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 135 EEAPYDRIIVTAAAPEVP-------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCcCEEEEeeccCCCC-------HHHHHhcccCCEEEEEEc
Confidence 347899999987664443 456788999999999754
No 118
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.67 E-value=2.8e-07 Score=87.84 Aligned_cols=95 Identities=22% Similarity=0.321 Sum_probs=69.5
Q ss_pred CCEEEEECCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHH-HHcCC----------------CeEEEEecccccCCC
Q 013605 103 VRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFA-LERGV----------------PAVIGVLGTIKMPYA 163 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~~--v~~vdis~~dis~a~i~~a-~e~~~----------------~~~~~~~d~~~lp~~ 163 (439)
+.+||..|||.|....+|+++| |+++|+|+ .+++.+ .+++. .+.+.++|...++-.
T Consensus 38 ~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~-----~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSP-----TAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHHTTEEEEEEES-H-----HHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCeEEEeCCCChHHHHHHHHCCCeEEEEecCH-----HHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 3489999999999999999997 66666665 444444 23221 245677888776643
Q ss_pred C-CCccEEEecccccccCCCh-HHHHHHHHHcCCCCeEEEE
Q 013605 164 S-RAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVL 202 (439)
Q Consensus 164 d-~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lii 202 (439)
. ++||+|+-..+++.++++. .++.+.+.++|+|||.+++
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 3 5899999888887777666 8999999999999999444
No 119
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.66 E-value=2.5e-07 Score=92.63 Aligned_cols=100 Identities=15% Similarity=0.114 Sum_probs=70.6
Q ss_pred CEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccccCCCCCCccEEEeccccc
Q 013605 104 RTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (439)
Q Consensus 104 ~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~d~sFDlV~~~~~l~ 177 (439)
.+|||+|||+|.++..++.. .++++|+++..+..+.. .+...+. .+.+..+|... ++++++||+|+|+...+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~-n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEI-NIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 48999999999999999875 48999998866655444 3444444 36677777633 23456899999974332
Q ss_pred cc-------------C-------CC----hHHHHHHHHHcCCCCeEEEEEeC
Q 013605 178 PW-------------G-------AN----DGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 178 ~~-------------~-------~d----~~~~L~ei~RvLkPGG~liis~p 205 (439)
.. + .+ ...+++++.+.|+|||.+++...
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 10 0 00 14678999999999999999754
No 120
>PRK00811 spermidine synthase; Provisional
Probab=98.64 E-value=1.7e-07 Score=92.82 Aligned_cols=102 Identities=14% Similarity=0.148 Sum_probs=71.3
Q ss_pred CCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHH-----cCCCeEEEEecccc-cCCCCCCccEEE
Q 013605 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE-----RGVPAVIGVLGTIK-MPYASRAFDMAH 171 (439)
Q Consensus 102 ~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e-----~~~~~~~~~~d~~~-lp~~d~sFDlV~ 171 (439)
.+++||+||||.|..+..++++ .|+++|+++..+..+...+..- ....+.+..+|+.. +....++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 3458999999999999999886 3889999886554443332221 12346677778643 334567899999
Q ss_pred ecccccccCCC----hHHHHHHHHHcCCCCeEEEEEe
Q 013605 172 CSRCLIPWGAN----DGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 172 ~~~~l~~~~~d----~~~~L~ei~RvLkPGG~liis~ 204 (439)
+...- ++... ...+++.+.+.|+|||.+++..
T Consensus 156 ~D~~d-p~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 156 VDSTD-PVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ECCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 86432 33222 1578899999999999999864
No 121
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.63 E-value=3.5e-07 Score=95.66 Aligned_cols=114 Identities=15% Similarity=0.170 Sum_probs=78.3
Q ss_pred HHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccC--CCC
Q 013605 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--YAS 164 (439)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp--~~d 164 (439)
.+...+... ++.+|||+|||+|..+..+++. .++++|+++.++..++ +.+...+..+.+..+|+..++ ++.
T Consensus 235 ~~~~~l~~~--~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~-~n~~~~g~~~~~~~~D~~~~~~~~~~ 311 (427)
T PRK10901 235 LAATLLAPQ--NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVR-ENLQRLGLKATVIVGDARDPAQWWDG 311 (427)
T ss_pred HHHHHcCCC--CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEcCcccchhhccc
Confidence 344455433 3458999999999999998875 3889999886665544 344555666777778876654 346
Q ss_pred CCccEEEeccccc-----------ccCCCh----------HHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 165 RAFDMAHCSRCLI-----------PWGAND----------GRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 165 ~sFDlV~~~~~l~-----------~~~~d~----------~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
++||.|++..... .|.... ..++.++.++|||||.+++++...
T Consensus 312 ~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 312 QPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 7899999533110 111111 368999999999999999987533
No 122
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.63 E-value=2.4e-08 Score=93.94 Aligned_cols=98 Identities=18% Similarity=0.194 Sum_probs=65.7
Q ss_pred CCCEEEEECCCCchHHHHHhhCC---cEEEeCCccchHHHHHHHHHHc-----CCCeEEEEecccccCCCCCCccEEEec
Q 013605 102 TVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALER-----GVPAVIGVLGTIKMPYASRAFDMAHCS 173 (439)
Q Consensus 102 ~~~~VLDIGCG~G~~~~~La~~~---v~~vdis~~dis~a~i~~a~e~-----~~~~~~~~~d~~~lp~~d~sFDlV~~~ 173 (439)
...++||.|+|.|+.+..|+-.- |..++..+ ..++.|++. ..-..+.....+.+..+.++||+|++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~-----~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~Q 129 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVE-----KFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQ 129 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-H-----HHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEE
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCH-----HHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEeh
Confidence 45689999999999999887764 55555544 344444432 222456666777765556799999999
Q ss_pred ccccccCCCh-HHHHHHHHHcCCCCeEEEEEe
Q 013605 174 RCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 174 ~~l~~~~~d~-~~~L~ei~RvLkPGG~liis~ 204 (439)
+|+.|+.++. ..+|+++...|+|+|++++-.
T Consensus 130 W~lghLTD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 130 WCLGHLTDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp S-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhhccCCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 9999998655 899999999999999999943
No 123
>PRK04457 spermidine synthase; Provisional
Probab=98.62 E-value=5.1e-07 Score=88.38 Aligned_cols=116 Identities=13% Similarity=0.170 Sum_probs=74.1
Q ss_pred HHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc-CCCeEEEEecccc-c
Q 013605 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIK-M 160 (439)
Q Consensus 87 ~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~-~~~~~~~~~d~~~-l 160 (439)
.|.+.+...+... ..+++|||||||+|.++..++.. .++++|+++..+..+...+.... ...+.+.++|... +
T Consensus 52 ~y~~~m~~~l~~~-~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l 130 (262)
T PRK04457 52 AYTRAMMGFLLFN-PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYI 130 (262)
T ss_pred HHHHHHHHHHhcC-CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHH
Confidence 3445444333212 23458999999999999988765 48999998854443333222111 2346677777633 3
Q ss_pred CCCCCCccEEEecccccc--cCC--ChHHHHHHHHHcCCCCeEEEEEe
Q 013605 161 PYASRAFDMAHCSRCLIP--WGA--NDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 161 p~~d~sFDlV~~~~~l~~--~~~--d~~~~L~ei~RvLkPGG~liis~ 204 (439)
.-..++||+|++.. +.. .+. ....+++++.++|+|||.+++..
T Consensus 131 ~~~~~~yD~I~~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 131 AVHRHSTDVILVDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred HhCCCCCCEEEEeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 33346899999853 211 111 12689999999999999999863
No 124
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.61 E-value=1.1e-06 Score=85.58 Aligned_cols=118 Identities=18% Similarity=0.236 Sum_probs=76.8
Q ss_pred hHHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc
Q 013605 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK 159 (439)
Q Consensus 84 g~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~ 159 (439)
..+.+++.+...+... ....+|||+|||+|.++..++.. .++++|+++..+..++.+ +...+ ..+..+|...
T Consensus 69 ~Te~Lv~~~l~~~~~~-~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N-~~~~~--~~~~~~D~~~ 144 (251)
T TIGR03704 69 RTEFLVDEAAALARPR-SGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRN-LADAG--GTVHEGDLYD 144 (251)
T ss_pred cHHHHHHHHHHhhccc-CCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcC--CEEEEeechh
Confidence 3456666666655321 22348999999999999998764 488999988666544433 33333 3566667643
Q ss_pred -cCC-CCCCccEEEecccccccC---------------------CC----hHHHHHHHHHcCCCCeEEEEEeC
Q 013605 160 -MPY-ASRAFDMAHCSRCLIPWG---------------------AN----DGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 160 -lp~-~d~sFDlV~~~~~l~~~~---------------------~d----~~~~L~ei~RvLkPGG~liis~p 205 (439)
++- ..++||+|+++..+.... .+ ...++..+.++|+|||.+++...
T Consensus 145 ~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 145 ALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 221 135799999986543211 01 12677778899999999999864
No 125
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.60 E-value=1.2e-07 Score=90.62 Aligned_cols=96 Identities=22% Similarity=0.347 Sum_probs=72.2
Q ss_pred HHHHhhcCCCCCCCCEEEEECCCCchHHHHHhh-CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCcc
Q 013605 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWS-RNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFD 168 (439)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~-~~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFD 168 (439)
+.|++.+...+ ....|-|+|||.+.++. .. ..|...|+.+ +.-.+..+|+..+|++|+|.|
T Consensus 169 d~ii~~ik~r~-~~~vIaD~GCGEakiA~--~~~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d~svD 230 (325)
T KOG3045|consen 169 DVIIRKIKRRP-KNIVIADFGCGEAKIAS--SERHKVHSFDLVA---------------VNERVIACDMRNVPLEDESVD 230 (325)
T ss_pred HHHHHHHHhCc-CceEEEecccchhhhhh--ccccceeeeeeec---------------CCCceeeccccCCcCccCccc
Confidence 34555554333 34579999999998876 22 2578787743 234567789999999999999
Q ss_pred EEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 169 MAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 169 lV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
++++..++ ...+...++.|+.|+|++||.++|..-
T Consensus 231 vaV~CLSL--Mgtn~~df~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 231 VAVFCLSL--MGTNLADFIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred EEEeeHhh--hcccHHHHHHHHHHHhccCceEEEEeh
Confidence 99875544 445778999999999999999999864
No 126
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.59 E-value=1.3e-07 Score=88.46 Aligned_cols=116 Identities=21% Similarity=0.344 Sum_probs=72.5
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC--C--cEEEeCCccchHHHHHH-HHHHcCCCeEE--EEeccc
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--N--VIAMSFAPRDSHEAQVQ-FALERGVPAVI--GVLGTI 158 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~--~--v~~vdis~~dis~a~i~-~a~e~~~~~~~--~~~d~~ 158 (439)
+..++.|.+.++.. . .+|||||||||..+.+++.+ . ....|+++... ..++ ...+.+.+... ...|+.
T Consensus 12 ~pIl~vL~~~l~~~--~-~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~--~sI~a~~~~~~~~Nv~~P~~lDv~ 86 (204)
T PF06080_consen 12 DPILEVLKQYLPDS--G-TRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLR--PSIRAWIAEAGLPNVRPPLALDVS 86 (204)
T ss_pred hHHHHHHHHHhCcc--C-ceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHH--hhHHHHHHhcCCcccCCCeEeecC
Confidence 45556666666322 1 15999999999999999987 2 33445533211 2222 22333332111 123332
Q ss_pred c--cCC------CCCCccEEEecccccccCCCh--HHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 159 K--MPY------ASRAFDMAHCSRCLIPWGAND--GRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 159 ~--lp~------~d~sFDlV~~~~~l~~~~~d~--~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
. .+. ..++||+|+|.+++ |..+-. ..+|+.+.++|++||.|++.+|-.
T Consensus 87 ~~~w~~~~~~~~~~~~~D~i~~~N~l-HI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~ 144 (204)
T PF06080_consen 87 APPWPWELPAPLSPESFDAIFCINML-HISPWSAVEGLFAGAARLLKPGGLLFLYGPFN 144 (204)
T ss_pred CCCCccccccccCCCCcceeeehhHH-HhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcc
Confidence 2 232 35689999999977 554433 789999999999999999988633
No 127
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.58 E-value=2e-06 Score=79.20 Aligned_cols=105 Identities=18% Similarity=0.062 Sum_probs=73.6
Q ss_pred HHhhcCCCCCCCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEecc-cccCCCCC
Q 013605 92 LASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGT-IKMPYASR 165 (439)
Q Consensus 92 l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~-~~~~~~d~-~~lp~~d~ 165 (439)
....|...+ +.+++|||||+|+.+..++.. .++++|-++..+..... .++.-+.+ +.+..+++ +.|+-.+
T Consensus 26 ~ls~L~~~~--g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~-N~~~fg~~n~~vv~g~Ap~~L~~~~- 101 (187)
T COG2242 26 TLSKLRPRP--GDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIER-NAARFGVDNLEVVEGDAPEALPDLP- 101 (187)
T ss_pred HHHhhCCCC--CCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHH-HHHHhCCCcEEEEeccchHhhcCCC-
Confidence 344444444 449999999999999999843 48888887754433333 44444454 56666666 4444223
Q ss_pred CccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 166 sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
+||.|+.... .....+|+.+...|||||.++...-
T Consensus 102 ~~daiFIGGg-----~~i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 102 SPDAIFIGGG-----GNIEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred CCCEEEECCC-----CCHHHHHHHHHHHcCcCCeEEEEee
Confidence 7999998764 2457899999999999999999753
No 128
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.56 E-value=1e-06 Score=92.40 Aligned_cols=113 Identities=14% Similarity=0.086 Sum_probs=77.1
Q ss_pred HHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEecccccC---
Q 013605 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMP--- 161 (439)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~a~i~~a~e~~~~-~~~~~~d~~~lp--- 161 (439)
.+...+...+ +.+|||+|||+|..+..+++. .++++|+++..+..... .+...|.. +.+..+|+..++
T Consensus 243 l~~~~l~~~~--g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~-n~~r~g~~~v~~~~~D~~~~~~~~ 319 (434)
T PRK14901 243 LVAPLLDPQP--GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQE-NAQRLGLKSIKILAADSRNLLELK 319 (434)
T ss_pred HHHHHhCCCC--cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHH-HHHHcCCCeEEEEeCChhhccccc
Confidence 3444454333 458999999999999888864 38999998876655443 34445553 567777876665
Q ss_pred -CCCCCccEEEecc------cccccCC-----C----------hHHHHHHHHHcCCCCeEEEEEeCC
Q 013605 162 -YASRAFDMAHCSR------CLIPWGA-----N----------DGRYMIEVDRVLRPGGYWVLSGPP 206 (439)
Q Consensus 162 -~~d~sFDlV~~~~------~l~~~~~-----d----------~~~~L~ei~RvLkPGG~liis~p~ 206 (439)
+..++||.|++.. ++.+-++ . ...+|.++.++|||||+++.++..
T Consensus 320 ~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 320 PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 4467899999631 1111110 0 247799999999999999988643
No 129
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.55 E-value=5.9e-07 Score=93.95 Aligned_cols=115 Identities=12% Similarity=0.065 Sum_probs=76.3
Q ss_pred HHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEE--EEecccccCC-
Q 013605 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVI--GVLGTIKMPY- 162 (439)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~~~~--~~~d~~~lp~- 162 (439)
..+...+...+ +.+|||+|||+|..+..+++. .++++|+++..+..+.. .++..+..+.+ ..++....++
T Consensus 228 ~~~~~~L~~~~--g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~-n~~r~g~~~~v~~~~~d~~~~~~~ 304 (426)
T TIGR00563 228 QWVATWLAPQN--EETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYE-NLKRLGLTIKAETKDGDGRGPSQW 304 (426)
T ss_pred HHHHHHhCCCC--CCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-HHHHcCCCeEEEEecccccccccc
Confidence 34555554433 359999999999999888874 38999998866655443 44445665434 4444444443
Q ss_pred -CCCCccEEEec----c--cccccCC-----C----------hHHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 163 -ASRAFDMAHCS----R--CLIPWGA-----N----------DGRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 163 -~d~sFDlV~~~----~--~l~~~~~-----d----------~~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
++++||.|++. . ++.+.++ . ...+|.++.++|||||.+++++...
T Consensus 305 ~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 305 AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 56789999952 2 2211111 1 2478999999999999999987544
No 130
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.55 E-value=5.2e-07 Score=94.84 Aligned_cols=103 Identities=15% Similarity=0.159 Sum_probs=72.5
Q ss_pred CCEEEEECCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEecccccCCCCCCccEEEec---
Q 013605 103 VRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYASRAFDMAHCS--- 173 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~a~i~~a~e~~~~-~~~~~~d~~~lp~~d~sFDlV~~~--- 173 (439)
+.+|||+|||+|..+..+++. .++++|+++.++..+.. .+...+.. +.+..+|+..++ ++++||+|++.
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~-~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pc 328 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRS-HASALGITIIETIEGDARSFS-PEEQPDAILLDAPC 328 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH-HHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCC
Confidence 458999999999988877753 38999999876655443 44555654 567777776665 56789999952
Q ss_pred -cccc-------ccCCC----------hHHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 174 -RCLI-------PWGAN----------DGRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 174 -~~l~-------~~~~d----------~~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
.... .|... ...+|.++.+.|||||.+++++...
T Consensus 329 sg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 329 TGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 2110 11111 1358999999999999999987544
No 131
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.55 E-value=1.1e-06 Score=86.01 Aligned_cols=104 Identities=15% Similarity=0.148 Sum_probs=71.8
Q ss_pred CCEEEEECCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccccCCCCCCccEEEeccc-
Q 013605 103 VRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYASRAFDMAHCSRC- 175 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~d~sFDlV~~~~~- 175 (439)
+.+|||+|||+|..+..+++. .|+++|+++..+..... .+...+. .+.+...|...++...++||.|++...
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~-n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pc 150 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIA-NINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPC 150 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHH-HHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCC
Confidence 458999999999999888763 38999998866654444 3334454 356677777666655667999996321
Q ss_pred -----ccc-------cCC--------ChHHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 176 -----LIP-------WGA--------NDGRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 176 -----l~~-------~~~--------d~~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
+.. +.+ ....+|.++.+.|||||+++.++...
T Consensus 151 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 151 SGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 100 110 01358999999999999999987543
No 132
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.55 E-value=2.2e-07 Score=86.99 Aligned_cols=100 Identities=18% Similarity=0.236 Sum_probs=71.2
Q ss_pred EEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc-cC--CCCCCccEEEeccccc
Q 013605 105 TALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK-MP--YASRAFDMAHCSRCLI 177 (439)
Q Consensus 105 ~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~-lp--~~d~sFDlV~~~~~l~ 177 (439)
.+||||||.|.+...++.. +++|+|+...-+..+..+..+....++.+..+|+.. +. ++++++|.|+..+.=
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD- 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD- 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC-
Confidence 7999999999999999876 589999988666655554444444456777777754 33 567999999987643
Q ss_pred ccCCCh--------HHHHHHHHHcCCCCeEEEEEeC
Q 013605 178 PWGAND--------GRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 178 ~~~~d~--------~~~L~ei~RvLkPGG~liis~p 205 (439)
+|+... ..++.++.++|+|||.+.+.+.
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 665422 4899999999999999999864
No 133
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.54 E-value=7.9e-07 Score=85.58 Aligned_cols=102 Identities=18% Similarity=0.235 Sum_probs=74.2
Q ss_pred HHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC--C--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCC
Q 013605 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--N--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRA 166 (439)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~--~--v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~s 166 (439)
.+.+..... ..++|||||+|.|.++..++++ + ++..|+ ...++.+.+ ...+.+..+|.. -++|.
T Consensus 91 ~~~~~~d~~--~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl------p~v~~~~~~-~~rv~~~~gd~f-~~~P~-- 158 (241)
T PF00891_consen 91 ILLEAFDFS--GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL------PEVIEQAKE-ADRVEFVPGDFF-DPLPV-- 158 (241)
T ss_dssp HHHHHSTTT--TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-------HHHHCCHHH-TTTEEEEES-TT-TCCSS--
T ss_pred hhhcccccc--CccEEEeccCcchHHHHHHHHHCCCCcceeecc------Hhhhhcccc-ccccccccccHH-hhhcc--
Confidence 344444433 3458999999999999999886 3 556665 233444444 456888888876 55655
Q ss_pred ccEEEecccccccCCCh-HHHHHHHHHcCCCC--eEEEEEe
Q 013605 167 FDMAHCSRCLIPWGAND-GRYMIEVDRVLRPG--GYWVLSG 204 (439)
Q Consensus 167 FDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPG--G~liis~ 204 (439)
+|+++...++|+|.++. ..+|+++.+.|+|| |.++|..
T Consensus 159 ~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 159 ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 99999999999998665 78999999999999 9999975
No 134
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.52 E-value=5.7e-07 Score=94.12 Aligned_cols=113 Identities=14% Similarity=0.178 Sum_probs=77.0
Q ss_pred HHhhcCCCCCCCCEEEEECCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEecccccC-CCC
Q 013605 92 LASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMP-YAS 164 (439)
Q Consensus 92 l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~a~i~~a~e~~~~-~~~~~~d~~~lp-~~d 164 (439)
+..++...+ +.+|||+|||+|..+.++++. .++++|+++..+..... .+...+.. +.+...|+..++ +.+
T Consensus 229 ~~~~l~~~~--g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~-n~~r~g~~~v~~~~~Da~~l~~~~~ 305 (431)
T PRK14903 229 VPLLMELEP--GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEK-HAKRLKLSSIEIKIADAERLTEYVQ 305 (431)
T ss_pred HHHHhCCCC--CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHH-HHHHcCCCeEEEEECchhhhhhhhh
Confidence 334443333 448999999999998888764 38999999876655443 44455554 567777877665 456
Q ss_pred CCccEEEecc-c--ccccCCC------------------hHHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 165 RAFDMAHCSR-C--LIPWGAN------------------DGRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 165 ~sFDlV~~~~-~--l~~~~~d------------------~~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
++||.|++.. | +-.+..+ ...+|.++.+.|||||+++.++...
T Consensus 306 ~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 306 DTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred ccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 7899999631 1 1011111 1456899999999999999987644
No 135
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.51 E-value=1.2e-06 Score=92.14 Aligned_cols=114 Identities=17% Similarity=0.158 Sum_probs=79.8
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccc---
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIK--- 159 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~--- 159 (439)
+.+++.+.+.+.... +.+|||+|||+|.++..|+.. .++++|+++.++..+.. .+...+. .+.+..+|+..
T Consensus 283 e~l~~~vl~~l~~~~--~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~-n~~~~~~~~v~~~~~d~~~~l~ 359 (443)
T PRK13168 283 QKMVARALEWLDPQP--GDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARE-NARRNGLDNVTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHhcCCC--CCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHH-HHHHcCCCceEEEEeChHHhhh
Confidence 556667777765433 348999999999999999886 48899999877665554 3444444 47788888743
Q ss_pred -cCCCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 160 -MPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 160 -lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
+++.+++||+|++.... .. ....++.+.+ ++|++.++++..|.
T Consensus 360 ~~~~~~~~fD~Vi~dPPr---~g-~~~~~~~l~~-~~~~~ivyvSCnp~ 403 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPR---AG-AAEVMQALAK-LGPKRIVYVSCNPA 403 (443)
T ss_pred hhhhhcCCCCEEEECcCC---cC-hHHHHHHHHh-cCCCeEEEEEeChH
Confidence 33556789999997633 21 2455555555 69999999997544
No 136
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.49 E-value=9.7e-07 Score=84.48 Aligned_cols=99 Identities=14% Similarity=0.233 Sum_probs=79.0
Q ss_pred EEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccc-C--CCCCCccEEEecccc
Q 013605 105 TALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKM-P--YASRAFDMAHCSRCL 176 (439)
Q Consensus 105 ~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~l-p--~~d~sFDlV~~~~~l 176 (439)
.+||||||.|.+...+|.+ +++|+++...-+ ..+.+.+.+.++ ++.+...|+..+ . +++++.|-|+..+.
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v-~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP- 128 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGV-AKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP- 128 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHH-HHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC-
Confidence 7999999999999999987 589999987444 445557778888 888888887443 2 45669999999874
Q ss_pred cccCCCh--------HHHHHHHHHcCCCCeEEEEEeC
Q 013605 177 IPWGAND--------GRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 177 ~~~~~d~--------~~~L~ei~RvLkPGG~liis~p 205 (439)
-+|+... ..+++.+.++|+|||.+.+.+.
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 3776433 4799999999999999999864
No 137
>PHA03411 putative methyltransferase; Provisional
Probab=98.49 E-value=8e-07 Score=86.92 Aligned_cols=95 Identities=14% Similarity=0.167 Sum_probs=69.3
Q ss_pred CEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEeccccccc
Q 013605 104 RTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (439)
Q Consensus 104 ~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~ 179 (439)
.+|||+|||+|.++..++.+ .++++|+++. +++.++++...+.+..+|+..+.. +.+||+|+++..+.+.
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~-----al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPE-----FARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKI 139 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHH-----HHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCcccc
Confidence 48999999999998888664 4888888774 444555544457778888876653 4689999998888664
Q ss_pred CCCh-------------------HHHHHHHHHcCCCCeEEEEEe
Q 013605 180 GAND-------------------GRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 180 ~~d~-------------------~~~L~ei~RvLkPGG~liis~ 204 (439)
.... ..++..+.++|+|+|.+++.-
T Consensus 140 ~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y 183 (279)
T PHA03411 140 NTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY 183 (279)
T ss_pred CchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE
Confidence 3221 356677788999999877753
No 138
>PHA03412 putative methyltransferase; Provisional
Probab=98.48 E-value=7.3e-07 Score=85.35 Aligned_cols=93 Identities=10% Similarity=0.158 Sum_probs=65.0
Q ss_pred CCEEEEECCCCchHHHHHhhC-------CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEeccc
Q 013605 103 VRTALDTGCGVASWGAYLWSR-------NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRC 175 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~-------~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~ 175 (439)
+.+|||+|||+|.++..++.+ .++++|+++. +.+.|++....+.+...|+...++ +++||+|+++..
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~-----Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPP 123 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHT-----YYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPP 123 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHH-----HHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCC
Confidence 348999999999999987753 4888888764 444555554457778888765554 568999999876
Q ss_pred ccccCC-C----------hHHHHHHHHHcCCCCeEEEE
Q 013605 176 LIPWGA-N----------DGRYMIEVDRVLRPGGYWVL 202 (439)
Q Consensus 176 l~~~~~-d----------~~~~L~ei~RvLkPGG~lii 202 (439)
+..... + ...++..+.+++++|+. |+
T Consensus 124 Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 124 FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred CCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 652211 1 13578888887777775 55
No 139
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=1.8e-06 Score=85.43 Aligned_cols=98 Identities=24% Similarity=0.287 Sum_probs=68.3
Q ss_pred EEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEecccccCCCCCCccEEEeccccccc
Q 013605 105 TALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (439)
Q Consensus 105 ~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~-~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~ 179 (439)
+|||+|||+|..+..++.. .|+++|+|+..+.-+ .+.|...++. ..+...|. .-+. .+.||+|+|+...+.-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A-~~Na~~~~l~~~~~~~~dl-f~~~-~~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALA-RENAERNGLVRVLVVQSDL-FEPL-RGKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHH-HHHHHHcCCccEEEEeeec-cccc-CCceeEEEeCCCCCCC
Confidence 7999999999999999886 489999999555433 3456666642 23333322 1122 3489999998766544
Q ss_pred C----------CCh--------------HHHHHHHHHcCCCCeEEEEEeC
Q 013605 180 G----------AND--------------GRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 180 ~----------~d~--------------~~~L~ei~RvLkPGG~liis~p 205 (439)
. .++ ..++.++.+.|+|||.+++...
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 3 011 2678889999999999999864
No 140
>PRK01581 speE spermidine synthase; Validated
Probab=98.47 E-value=8.8e-07 Score=89.77 Aligned_cols=125 Identities=14% Similarity=0.064 Sum_probs=79.8
Q ss_pred cCCCCCCCcchHH-HHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHH---
Q 013605 74 FPGGGTQFPQGAD-KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE--- 145 (439)
Q Consensus 74 fp~~~~~f~~g~~-~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e--- 145 (439)
|..|.-++....+ .|.+.+....-..-...++||+||||.|..++.+++. .++++|+++.++ +.|++
T Consensus 121 ~LDG~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVI-----elAr~~~~ 195 (374)
T PRK01581 121 YLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMI-----NMARNVPE 195 (374)
T ss_pred EECCeeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHH-----HHHHhccc
Confidence 4444455555443 3445554422112233459999999999999888875 388888877544 33332
Q ss_pred ---------cCCCeEEEEecccc-cCCCCCCccEEEecccccccCC-----ChHHHHHHHHHcCCCCeEEEEEe
Q 013605 146 ---------RGVPAVIGVLGTIK-MPYASRAFDMAHCSRCLIPWGA-----NDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 146 ---------~~~~~~~~~~d~~~-lp~~d~sFDlV~~~~~l~~~~~-----d~~~~L~ei~RvLkPGG~liis~ 204 (439)
....+.+.++|+.. +.-..++||+|++... .+... ....+++.+.+.|+|||++++..
T Consensus 196 L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 196 LVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred cchhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 12456677777644 4445678999998742 11110 11568999999999999998864
No 141
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.47 E-value=1.1e-06 Score=86.43 Aligned_cols=102 Identities=11% Similarity=0.106 Sum_probs=67.9
Q ss_pred CCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc----CCCeEEEEecccc-cCCCCCCccEEEec
Q 013605 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALER----GVPAVIGVLGTIK-MPYASRAFDMAHCS 173 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~----~~~~~~~~~d~~~-lp~~d~sFDlV~~~ 173 (439)
+++||+||||+|.++..++.. .++++|+++..+..+...+.... ...+.+...|... +....++||+|++.
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D 152 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD 152 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence 459999999999999888775 38899998855544433222211 1234555556532 23235789999986
Q ss_pred ccccccCCC----hHHHHHHHHHcCCCCeEEEEEeC
Q 013605 174 RCLIPWGAN----DGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 174 ~~l~~~~~d----~~~~L~ei~RvLkPGG~liis~p 205 (439)
... +.... ...+++.+.++|+|||.+++...
T Consensus 153 ~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 153 STD-PVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred CCC-CCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 532 22211 25788999999999999998743
No 142
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.46 E-value=1.3e-06 Score=93.30 Aligned_cols=101 Identities=19% Similarity=0.155 Sum_probs=68.8
Q ss_pred CCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccccCCCCCCccEEEecccc
Q 013605 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCSRCL 176 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~d~sFDlV~~~~~l 176 (439)
..+|||+|||+|.++..++.. .++++|+|+..+..+.. .+...++ .+.+..+|... +++.++||+|+|+..+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~-N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKS-NAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHH-HHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 358999999999999988754 48999999866655544 3444444 35566666532 2345689999997544
Q ss_pred cccCC---------------------Ch----HHHHHHHHHcCCCCeEEEEEeC
Q 013605 177 IPWGA---------------------ND----GRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 177 ~~~~~---------------------d~----~~~L~ei~RvLkPGG~liis~p 205 (439)
+...+ +. ..++.++.++|+|||.+++...
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 32110 11 2467788899999999998753
No 143
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.45 E-value=1.4e-06 Score=91.69 Aligned_cols=112 Identities=18% Similarity=0.160 Sum_probs=74.8
Q ss_pred HHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEecccccC--C
Q 013605 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMP--Y 162 (439)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~a~i~~a~e~~~~-~~~~~~d~~~lp--~ 162 (439)
.+...+...+ +.+|||+|||+|..+..+++. .++++|+++..+..+. +.+...+.. +.+..+|...++ +
T Consensus 241 lv~~~l~~~~--g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~-~n~~~~g~~~v~~~~~D~~~~~~~~ 317 (444)
T PRK14902 241 LVAPALDPKG--GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIE-ENAKRLGLTNIETKALDARKVHEKF 317 (444)
T ss_pred HHHHHhCCCC--CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCCcccccchh
Confidence 4444554333 358999999999999988874 3899999886554443 344445543 567777776543 3
Q ss_pred CCCCccEEEeccccc------c-----cCCC----------hHHHHHHHHHcCCCCeEEEEEeCC
Q 013605 163 ASRAFDMAHCSRCLI------P-----WGAN----------DGRYMIEVDRVLRPGGYWVLSGPP 206 (439)
Q Consensus 163 ~d~sFDlV~~~~~l~------~-----~~~d----------~~~~L~ei~RvLkPGG~liis~p~ 206 (439)
+ ++||+|++..... + |... ...+|.++.++|||||.++.++..
T Consensus 318 ~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 318 A-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred c-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 3 7899999753110 0 1111 135799999999999999987643
No 144
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=4.7e-06 Score=80.02 Aligned_cols=107 Identities=19% Similarity=0.246 Sum_probs=78.2
Q ss_pred HHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEecccccCCC
Q 013605 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKMPYA 163 (439)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~a~i~~a~e~~~~--~~~~~~d~~~lp~~ 163 (439)
.|...+.+.+++ +|||.|.|+|.++.+|+.. .|+++++-+ |..+.+.+...+.+.. +.+...|+...-++
T Consensus 85 ~I~~~~gi~pg~--rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~-d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 85 YIVARLGISPGS--RVLEAGTGSGALTAYLARAVGPEGHVTTYEIRE-DFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHcCCCCCC--EEEEcccCchHHHHHHHHhhCCCceEEEEEecH-HHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 455666555555 9999999999999999953 388888876 4444444444443443 45566676555555
Q ss_pred CCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 164 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
+ .||+|+.-. +++-.++..+..+|+|||.+++-.|..
T Consensus 162 ~-~vDav~LDm------p~PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 162 E-DVDAVFLDL------PDPWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred c-ccCEEEEcC------CChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 4 899998754 477889999999999999999988743
No 145
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.42 E-value=3.5e-06 Score=79.22 Aligned_cols=119 Identities=8% Similarity=0.024 Sum_probs=75.4
Q ss_pred cchHHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecc
Q 013605 82 PQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGT 157 (439)
Q Consensus 82 ~~g~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~a~i~~a~e~~~-~~~~~~~d~ 157 (439)
....+...+.+.+.+... ..+.+|||+|||+|.++..++.+ .++++|+++..+..+ .+.++..+. .+.+..+|+
T Consensus 34 Rp~~d~v~e~l~~~l~~~-~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a-~~Nl~~~~~~~v~~~~~D~ 111 (199)
T PRK10909 34 RPTTDRVRETLFNWLAPV-IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQL-IKNLATLKAGNARVVNTNA 111 (199)
T ss_pred CcCCHHHHHHHHHHHhhh-cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHH-HHHHHHhCCCcEEEEEchH
Confidence 445566666666665321 12348999999999999865544 488999987544333 334444444 366777776
Q ss_pred cc-cCCCCCCccEEEecccccccCCC-hHHHHHHHHH--cCCCCeEEEEEeC
Q 013605 158 IK-MPYASRAFDMAHCSRCLIPWGAN-DGRYMIEVDR--VLRPGGYWVLSGP 205 (439)
Q Consensus 158 ~~-lp~~d~sFDlV~~~~~l~~~~~d-~~~~L~ei~R--vLkPGG~liis~p 205 (439)
.. ++...++||+|++...+ ... ...++..+.. .|+|+|.++++.+
T Consensus 112 ~~~l~~~~~~fDlV~~DPPy---~~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 112 LSFLAQPGTPHNVVFVDPPF---RKGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred HHHHhhcCCCceEEEECCCC---CCChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 43 33334579999998753 222 2455555554 3799999998864
No 146
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.38 E-value=2.9e-06 Score=85.20 Aligned_cols=115 Identities=14% Similarity=0.102 Sum_probs=76.7
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCC-eEEEEecccccCC
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPY 162 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~--v~~vdis~~dis~a~i~~a~e~~~~-~~~~~~d~~~lp~ 162 (439)
+.+++.+.+++.... +.+|||+|||+|.++..++..+ |+++|+++.++..+. +.++..+++ +.+..+|+..+..
T Consensus 159 ~~l~~~v~~~l~~~~--~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~-~n~~~~~l~~v~~~~~D~~~~~~ 235 (315)
T PRK03522 159 AQLYATARDWVRELP--PRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAK-QSAAELGLTNVQFQALDSTQFAT 235 (315)
T ss_pred HHHHHHHHHHHHhcC--CCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEEcCHHHHHH
Confidence 445555555553222 3589999999999999999874 899999987665544 344555553 7788888865532
Q ss_pred -CCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 163 -ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 163 -~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
..++||+|++.... . .....+.++...++|++.++++..+.
T Consensus 236 ~~~~~~D~Vv~dPPr---~-G~~~~~~~~l~~~~~~~ivyvsc~p~ 277 (315)
T PRK03522 236 AQGEVPDLVLVNPPR---R-GIGKELCDYLSQMAPRFILYSSCNAQ 277 (315)
T ss_pred hcCCCCeEEEECCCC---C-CccHHHHHHHHHcCCCeEEEEECCcc
Confidence 34579999997532 1 11223334445578999999887554
No 147
>PLN02366 spermidine synthase
Probab=98.38 E-value=2.5e-06 Score=85.42 Aligned_cols=101 Identities=14% Similarity=0.133 Sum_probs=67.5
Q ss_pred CCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHH----cCCCeEEEEeccccc-C-CCCCCccEEEe
Q 013605 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE----RGVPAVIGVLGTIKM-P-YASRAFDMAHC 172 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e----~~~~~~~~~~d~~~l-p-~~d~sFDlV~~ 172 (439)
.++||+||||.|..+..+++. .++++|+++..+..+...+... ....+.+..+|+... . .++++||+|++
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~ 171 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIV 171 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEE
Confidence 458999999999999999886 3778888774443332222211 123467777776322 2 23568999998
Q ss_pred cccccccCCC----hHHHHHHHHHcCCCCeEEEEEe
Q 013605 173 SRCLIPWGAN----DGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 173 ~~~l~~~~~d----~~~~L~ei~RvLkPGG~liis~ 204 (439)
...- +.... ...+++.+.+.|+|||.++.-.
T Consensus 172 D~~d-p~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 172 DSSD-PVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred cCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 5422 32221 1478999999999999998754
No 148
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.36 E-value=1.8e-06 Score=83.09 Aligned_cols=109 Identities=13% Similarity=0.177 Sum_probs=72.8
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEeccc
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTI 158 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~a~i~~a~e~~~~--~~~~~~d~~ 158 (439)
..++..+.+.. . .++|||+|||+|+.+..++.. .++++|+++.....+ .+...+.+.. +.+..+++.
T Consensus 57 g~~L~~l~~~~---~--~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A-~~n~~~~gl~~~i~~~~gda~ 130 (234)
T PLN02781 57 GLFLSMLVKIM---N--AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVG-LEFIKKAGVDHKINFIQSDAL 130 (234)
T ss_pred HHHHHHHHHHh---C--CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHH-HHHHHHcCCCCcEEEEEccHH
Confidence 44555555443 2 348999999999987777653 389999988544433 3344445543 566777763
Q ss_pred c-cC-----CCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 159 K-MP-----YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 159 ~-lp-----~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
. ++ .+.++||+|++... .+....++..+.+.|+|||.+++..
T Consensus 131 ~~L~~l~~~~~~~~fD~VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 131 SALDQLLNNDPKPEFDFAFVDAD----KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred HHHHHHHhCCCCCCCCEEEECCC----HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 3 22 12468999988531 1233678999999999999988754
No 149
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.33 E-value=5.7e-06 Score=79.33 Aligned_cols=99 Identities=14% Similarity=0.095 Sum_probs=61.2
Q ss_pred HHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCCCeE-EEEeccccc-----
Q 013605 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVPAV-IGVLGTIKM----- 160 (439)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~---v~~vdis~~dis~a~i~~a~e~~~~~~-~~~~d~~~l----- 160 (439)
..+.+.+... ..+.+|||+|||+|.|+..+++.+ ++++|+++.++..... ....+. +...++..+
T Consensus 64 ~~~l~~~~~~-~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~-----~~~~v~~~~~~ni~~~~~~~~ 137 (228)
T TIGR00478 64 KEALEEFNID-VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLR-----QDERVKVLERTNIRYVTPADI 137 (228)
T ss_pred HHHHHhcCCC-CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHh-----cCCCeeEeecCCcccCCHhHc
Confidence 3444444321 234589999999999999999884 8899998865544222 122221 222233322
Q ss_pred CCCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 161 p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
+..-..||+++++.++ .+..+.+.|+| |.+++-.
T Consensus 138 ~~d~~~~DvsfiS~~~---------~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 138 FPDFATFDVSFISLIS---------ILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred CCCceeeeEEEeehHh---------HHHHHHHHhCc-CeEEEEc
Confidence 2222367777766532 57889999999 7777654
No 150
>PRK03612 spermidine synthase; Provisional
Probab=98.30 E-value=9.2e-06 Score=87.11 Aligned_cols=103 Identities=15% Similarity=0.119 Sum_probs=69.0
Q ss_pred CCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHH--HHH-H----cCCCeEEEEecccc-cCCCCCCccE
Q 013605 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQ--FAL-E----RGVPAVIGVLGTIK-MPYASRAFDM 169 (439)
Q Consensus 102 ~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~--~a~-e----~~~~~~~~~~d~~~-lp~~d~sFDl 169 (439)
+.++|||||||+|..+..++++ .++++|+++..+..+... +.. . ....+.+...|... +...+++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 3458999999999999998875 378888877544333321 100 0 11346677777644 3334578999
Q ss_pred EEecccccccCCC-----hHHHHHHHHHcCCCCeEEEEEeC
Q 013605 170 AHCSRCLIPWGAN-----DGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 170 V~~~~~l~~~~~d-----~~~~L~ei~RvLkPGG~liis~p 205 (439)
|++.... +..+. ...+++.+.+.|+|||.+++...
T Consensus 377 Ii~D~~~-~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 377 IIVDLPD-PSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred EEEeCCC-CCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 9997532 22211 14688999999999999998753
No 151
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.29 E-value=4.5e-06 Score=87.43 Aligned_cols=113 Identities=17% Similarity=0.205 Sum_probs=76.3
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccc---
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIK--- 159 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~--- 159 (439)
..+++.+.+.+.... ..+|||+|||+|.++..|++. .|+++|+++.++..+.. .+...+. .+.+..+|+..
T Consensus 278 ~~l~~~~~~~l~~~~--~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~-n~~~~~~~nv~~~~~d~~~~l~ 354 (431)
T TIGR00479 278 EKLVDRALEALELQG--EELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQ-NAELNGIANVEFLAGTLETVLP 354 (431)
T ss_pred HHHHHHHHHHhccCC--CCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHH-HHHHhCCCceEEEeCCHHHHHH
Confidence 445566666664333 348999999999999999876 48999998866655444 3444444 46778888743
Q ss_pred -cCCCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 160 -MPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 160 -lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
+++.+++||+|++...- ..-...+++.+.+ ++|++.++++..
T Consensus 355 ~~~~~~~~~D~vi~dPPr---~G~~~~~l~~l~~-l~~~~ivyvsc~ 397 (431)
T TIGR00479 355 KQPWAGQIPDVLLLDPPR---KGCAAEVLRTIIE-LKPERIVYVSCN 397 (431)
T ss_pred HHHhcCCCCCEEEECcCC---CCCCHHHHHHHHh-cCCCEEEEEcCC
Confidence 23445689999986532 1112556666554 899998888754
No 152
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.28 E-value=2.3e-06 Score=84.68 Aligned_cols=102 Identities=18% Similarity=0.230 Sum_probs=69.0
Q ss_pred CCEEEEECCCCc----hHHHHHhhC--------CcEEEeCCccchHHHHHHHH------------HHc----------C-
Q 013605 103 VRTALDTGCGVA----SWGAYLWSR--------NVIAMSFAPRDSHEAQVQFA------------LER----------G- 147 (439)
Q Consensus 103 ~~~VLDIGCG~G----~~~~~La~~--------~v~~vdis~~dis~a~i~~a------------~e~----------~- 147 (439)
..+|+..||++| +++..|.+. .|+|+||++..+..|..-.- .++ +
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 368999999999 344444442 37888888765554442200 000 0
Q ss_pred --------CCeEEEEecccccCCC-CCCccEEEecccccccCCCh-HHHHHHHHHcCCCCeEEEEEe
Q 013605 148 --------VPAVIGVLGTIKMPYA-SRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 148 --------~~~~~~~~d~~~lp~~-d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~liis~ 204 (439)
..+.|...++...+++ .+.||+|+|.++++++.++. ..++.++.+.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 1134555565444443 57899999999998886544 899999999999999988764
No 153
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.27 E-value=2.9e-06 Score=80.56 Aligned_cols=105 Identities=21% Similarity=0.382 Sum_probs=65.9
Q ss_pred CCCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHH----HcCCC-----------------------
Q 013605 101 GTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFAL----ERGVP----------------------- 149 (439)
Q Consensus 101 ~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~----e~~~~----------------------- 149 (439)
-.+..+|||||-.|.++..+++. .+.++||++.-+..|..+.-. +....
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 34558999999999999999886 489999977544333321100 00000
Q ss_pred --------eEE----EEecc-cccCCCCCCccEEEecccc----cccCCCh-HHHHHHHHHcCCCCeEEEEEeC
Q 013605 150 --------AVI----GVLGT-IKMPYASRAFDMAHCSRCL----IPWGAND-GRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 150 --------~~~----~~~d~-~~lp~~d~sFDlV~~~~~l----~~~~~d~-~~~L~ei~RvLkPGG~liis~p 205 (439)
..+ .+... +-+.+....||+|+|-.+. ..|.++. ..+|+.+.++|.|||+|++.-.
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQ 210 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQ 210 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCC
Confidence 000 01111 1223345679999985432 2455444 7899999999999999998743
No 154
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.27 E-value=4e-06 Score=92.94 Aligned_cols=102 Identities=14% Similarity=0.107 Sum_probs=71.9
Q ss_pred CCEEEEECCCCchHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCC---CeEEEEecccc-cCCCCCCccEEEeccc
Q 013605 103 VRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGV---PAVIGVLGTIK-MPYASRAFDMAHCSRC 175 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~~---v~~vdis~~dis~a~i~~a~e~~~---~~~~~~~d~~~-lp~~d~sFDlV~~~~~ 175 (439)
+++|||+|||+|.++..++..| |+++|+|+..+..+..+. ...+. .+.+..+|+.+ +.-..++||+|++...
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~-~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNF-ALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH-HHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 3489999999999999999863 889999987666555443 33444 36777888643 2212568999999753
Q ss_pred ccccC----------CChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 176 LIPWG----------ANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 176 l~~~~----------~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
...-. .+...++..+.++|+|||.++++..
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 21111 1124678888999999999998764
No 155
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.23 E-value=5.7e-06 Score=85.64 Aligned_cols=102 Identities=11% Similarity=0.004 Sum_probs=69.1
Q ss_pred CCEEEEECCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC---CeEEEEeccccc-C---CCCCCccEEEe
Q 013605 103 VRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV---PAVIGVLGTIKM-P---YASRAFDMAHC 172 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~a~i~~a~e~~~---~~~~~~~d~~~l-p---~~d~sFDlV~~ 172 (439)
+.+|||+|||+|.++..++.. .++++|+++..+..+.. .+...++ .+.+..+|+... . ...++||+|++
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~-N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQ-NVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 358999999999998876654 38999999876655443 4444454 356778887443 1 23568999999
Q ss_pred cccccccCC--------ChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 173 SRCLIPWGA--------NDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 173 ~~~l~~~~~--------d~~~~L~ei~RvLkPGG~liis~p 205 (439)
......-.. ....++..+.++|+|||.++..+.
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 864321110 113445567899999999998653
No 156
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.16 E-value=2.2e-05 Score=80.80 Aligned_cols=115 Identities=14% Similarity=0.045 Sum_probs=74.9
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccccC-
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMP- 161 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp- 161 (439)
+.+.+.+.+.+.... +.+|||+|||+|.++..++.. .++++|+++..+..+. +.++..+. .+.+..+|+....
T Consensus 219 ~~l~~~~~~~l~~~~--~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~-~N~~~~~~~~~~~~~~d~~~~~~ 295 (374)
T TIGR02085 219 AQLYATARQWVREIP--VTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQ-QSAQMLGLDNLSFAALDSAKFAT 295 (374)
T ss_pred HHHHHHHHHHHHhcC--CCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHH-HHHHHcCCCcEEEEECCHHHHHH
Confidence 344444445443222 248999999999999999977 4889999886554444 34445555 4677888875432
Q ss_pred CCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 162 ~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
...++||+|++.... ..-...+++.+. .++|++.++++..|.
T Consensus 296 ~~~~~~D~vi~DPPr---~G~~~~~l~~l~-~~~p~~ivyvsc~p~ 337 (374)
T TIGR02085 296 AQMSAPELVLVNPPR---RGIGKELCDYLS-QMAPKFILYSSCNAQ 337 (374)
T ss_pred hcCCCCCEEEECCCC---CCCcHHHHHHHH-hcCCCeEEEEEeCHH
Confidence 122469999998643 222245555554 479999999987543
No 157
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.15 E-value=2.2e-06 Score=80.39 Aligned_cols=119 Identities=21% Similarity=0.367 Sum_probs=64.6
Q ss_pred HHHHHHHH-hhcCC-CCCCCCEEEEECCCCc----hHHHHHhh-----C----CcEEEeCCccchHHHHHH---------
Q 013605 86 DKYIDQLA-SVIPI-KNGTVRTALDTGCGVA----SWGAYLWS-----R----NVIAMSFAPRDSHEAQVQ--------- 141 (439)
Q Consensus 86 ~~~i~~l~-~~l~~-~~~~~~~VLDIGCG~G----~~~~~La~-----~----~v~~vdis~~dis~a~i~--------- 141 (439)
+.+.+.+. .++.. ..+...+|+.+||++| +++..|.+ . .+.|+|+++..+..|..-
T Consensus 13 ~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~ 92 (196)
T PF01739_consen 13 EALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRG 92 (196)
T ss_dssp HHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTT
T ss_pred HHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhh
Confidence 34444444 33322 2234568999999999 44455555 1 377888876544333210
Q ss_pred ---HHHHc------C----------CCeEEEEecccccCCCCCCccEEEecccccccCCCh-HHHHHHHHHcCCCCeEEE
Q 013605 142 ---FALER------G----------VPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWV 201 (439)
Q Consensus 142 ---~a~e~------~----------~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~li 201 (439)
...++ + ..+.|...+....+.+.+.||+|+|.++++++.++. ..+++.+.+.|+|||+|+
T Consensus 93 ~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~ 172 (196)
T PF01739_consen 93 LPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLF 172 (196)
T ss_dssp S-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEE
T ss_pred hHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEE
Confidence 00000 0 124666667655344567899999999999887554 789999999999999999
Q ss_pred EEe
Q 013605 202 LSG 204 (439)
Q Consensus 202 is~ 204 (439)
+..
T Consensus 173 lG~ 175 (196)
T PF01739_consen 173 LGH 175 (196)
T ss_dssp E-T
T ss_pred Eec
Confidence 974
No 158
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.14 E-value=1.1e-05 Score=74.04 Aligned_cols=120 Identities=17% Similarity=0.055 Sum_probs=67.2
Q ss_pred chHHHHHHHHHhhc----CCCCCCCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcC----CCe
Q 013605 83 QGADKYIDQLASVI----PIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERG----VPA 150 (439)
Q Consensus 83 ~g~~~~i~~l~~~l----~~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~----~~~ 150 (439)
.++..+.+.|.+.. ......+.+|||+|||+|..+..++.. .|+.+|..+ ..+.....++..+ ..+
T Consensus 22 ~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~--~l~~l~~Ni~~N~~~~~~~v 99 (173)
T PF10294_consen 22 PAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE--VLELLRRNIELNGSLLDGRV 99 (173)
T ss_dssp -HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S---HHHHHHHHHHTT--------
T ss_pred chHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch--hhHHHHHHHHhccccccccc
Confidence 44555555555532 122334569999999999888877776 488999876 3333444444333 223
Q ss_pred EEEEecc-ccc---CCCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 151 VIGVLGT-IKM---PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 151 ~~~~~d~-~~l---p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
.+...+= +.. .....+||+|+++.++ +.......+++-+.++|+++|.++++.+
T Consensus 100 ~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~-Y~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 100 SVRPLDWGDELDSDLLEPHSFDVILASDVL-YDEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEE--TTS-HHHHHHS-SSBSEEEEES---S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred cCcEEEecCcccccccccccCCEEEEeccc-chHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 3333321 111 1234689999999988 3333448899999999999999777754
No 159
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.14 E-value=2.4e-05 Score=75.86 Aligned_cols=109 Identities=18% Similarity=0.238 Sum_probs=73.4
Q ss_pred HHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC----C-cEEEeCCccchHHHHHHHHHHcCCC--eEEEEecccccCC
Q 013605 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----N-VIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKMPY 162 (439)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~----~-v~~vdis~~dis~a~i~~a~e~~~~--~~~~~~d~~~lp~ 162 (439)
..|...+.+.+++ +|||.|.|+|+++..|+.. | |...|+... ..+.+.+..+..++. +.+.+.|+..-.|
T Consensus 30 ~~I~~~l~i~pG~--~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~-~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~ 106 (247)
T PF08704_consen 30 SYILMRLDIRPGS--RVLEAGTGSGSLTHALARAVGPTGHVYTYEFRED-RAEKARKNFERHGLDDNVTVHHRDVCEEGF 106 (247)
T ss_dssp HHHHHHTT--TT---EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHH-HHHHHHHHHHHTTCCTTEEEEES-GGCG--
T ss_pred HHHHHHcCCCCCC--EEEEecCCcHHHHHHHHHHhCCCeEEEccccCHH-HHHHHHHHHHHcCCCCCceeEecceecccc
Confidence 4566677666665 9999999999999999874 3 888888763 333333344445553 6777888754444
Q ss_pred C---CCCccEEEecccccccCCChHHHHHHHHHcC-CCCeEEEEEeCCC
Q 013605 163 A---SRAFDMAHCSRCLIPWGANDGRYMIEVDRVL-RPGGYWVLSGPPI 207 (439)
Q Consensus 163 ~---d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvL-kPGG~liis~p~~ 207 (439)
. +..||.|+.-. +++-.++..+.++| |+||++++-.|..
T Consensus 107 ~~~~~~~~DavfLDl------p~Pw~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 107 DEELESDFDAVFLDL------PDPWEAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp STT-TTSEEEEEEES------SSGGGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred cccccCcccEEEEeC------CCHHHHHHHHHHHHhcCCceEEEECCCH
Confidence 2 36799998754 35667899999999 8999999988743
No 160
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.14 E-value=1.3e-05 Score=76.21 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=74.7
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEE-ecc
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGV-LGT 157 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~a~i~~a~e~~~~--~~~~~-~d~ 157 (439)
-.++..+++.. . .++|||||.+.|+.+.+|+.. .++++|+++.....+.. +-++.|.. +.... +|+
T Consensus 48 g~~L~~L~~~~---~--~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~-n~~~ag~~~~i~~~~~gda 121 (219)
T COG4122 48 GALLRLLARLS---G--PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARE-NLAEAGVDDRIELLLGGDA 121 (219)
T ss_pred HHHHHHHHHhc---C--CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHH-HHHHcCCcceEEEEecCcH
Confidence 44444444443 2 348999999999999999875 38999998865544444 33444554 33444 354
Q ss_pred -cccC-CCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 158 -IKMP-YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 158 -~~lp-~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
+.+. ...++||+|+.-. ...+...++..+.++|+|||.+++..
T Consensus 122 l~~l~~~~~~~fDliFIDa----dK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 122 LDVLSRLLDGSFDLVFIDA----DKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred HHHHHhccCCCccEEEEeC----ChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 2333 4578999998753 33344889999999999999999853
No 161
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=3.3e-05 Score=71.16 Aligned_cols=89 Identities=16% Similarity=0.076 Sum_probs=62.9
Q ss_pred CCCEEEEECCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEecccccc
Q 013605 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (439)
Q Consensus 102 ~~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~ 178 (439)
.+++|+|+|||||.++...+-. .|.++|+++. ..+...+.+.+.+..+.+.++|+.+.. +.||.|+.+..+-.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~-a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~ 120 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPE-ALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFGS 120 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHH-HHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCcc
Confidence 3458999999999888766655 4999999984 445666667766667888988887764 56889999875533
Q ss_pred cCCCh-HHHHHHHHHcC
Q 013605 179 WGAND-GRYMIEVDRVL 194 (439)
Q Consensus 179 ~~~d~-~~~L~ei~RvL 194 (439)
+.... ..++..+.++-
T Consensus 121 ~~rhaDr~Fl~~Ale~s 137 (198)
T COG2263 121 QRRHADRPFLLKALEIS 137 (198)
T ss_pred ccccCCHHHHHHHHHhh
Confidence 32222 45666666554
No 162
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.11 E-value=1.1e-05 Score=86.10 Aligned_cols=102 Identities=13% Similarity=0.066 Sum_probs=75.4
Q ss_pred CCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEeccccc--CCCCCCccEEEecc
Q 013605 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKM--PYASRAFDMAHCSR 174 (439)
Q Consensus 102 ~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~-~~~~~~d~~~l--p~~d~sFDlV~~~~ 174 (439)
....+||||||.|.++..++.. +++|+++...-+..+.. .+.+.++. +.+...++..+ -++++++|.|+..+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~-~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLK-LAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHH-HHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 3458999999999999999986 68999998754444443 44555554 44444454323 27789999999987
Q ss_pred cccccCCCh--------HHHHHHHHHcCCCCeEEEEEeC
Q 013605 175 CLIPWGAND--------GRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 175 ~l~~~~~d~--------~~~L~ei~RvLkPGG~liis~p 205 (439)
.= +|+... ..+++.+.++|+|||.+.+.+.
T Consensus 426 PD-PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 426 PD-PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred CC-CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 43 776432 4899999999999999999864
No 163
>PLN02476 O-methyltransferase
Probab=98.09 E-value=1.6e-05 Score=78.30 Aligned_cols=96 Identities=11% Similarity=0.082 Sum_probs=68.5
Q ss_pred CEEEEECCCCchHHHHHhhC----C-cEEEeCCccchHHHHHHHHHHcCCC--eEEEEecc-cccC-C----CCCCccEE
Q 013605 104 RTALDTGCGVASWGAYLWSR----N-VIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGT-IKMP-Y----ASRAFDMA 170 (439)
Q Consensus 104 ~~VLDIGCG~G~~~~~La~~----~-v~~vdis~~dis~a~i~~a~e~~~~--~~~~~~d~-~~lp-~----~d~sFDlV 170 (439)
++|||||+|+|+.+.+++.. + ++++|.++.... .+.++.++.|.. +.+..+++ +.|+ + ..++||+|
T Consensus 120 k~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~-~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 120 ERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLE-VAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHH-HHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 48999999999999999873 3 789999885443 333444555554 66677776 3333 1 24689999
Q ss_pred EecccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 171 HCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 171 ~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
+.-. .......++..+.++|+|||.+++..
T Consensus 199 FIDa----~K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 199 FVDA----DKRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred EECC----CHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 8754 22233788999999999999998853
No 164
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.09 E-value=2e-05 Score=79.11 Aligned_cols=115 Identities=19% Similarity=0.212 Sum_probs=77.6
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhCCcEEEeCCccchHHHHHHHHHHc----CCC-eEEE-Eecccc
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALER----GVP-AVIG-VLGTIK 159 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~a~i~~a~e~----~~~-~~~~-~~d~~~ 159 (439)
..+...+.++.....|. .|||-=||||+++....-.|..+++. |+.+.+++-|+.+ +++ ..+. ..|+..
T Consensus 183 P~lAR~mVNLa~v~~G~--~vlDPFcGTGgiLiEagl~G~~viG~---Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~ 257 (347)
T COG1041 183 PRLARAMVNLARVKRGE--LVLDPFCGTGGILIEAGLMGARVIGS---DIDERMVRGAKINLEYYGIEDYPVLKVLDATN 257 (347)
T ss_pred HHHHHHHHHHhccccCC--EeecCcCCccHHHHhhhhcCceEeec---chHHHHHhhhhhhhhhhCcCceeEEEeccccc
Confidence 44455566666444444 89999999999998877776444444 4444555444432 233 3233 448999
Q ss_pred cCCCCCCccEEEecccccccC-------CC-hHHHHHHHHHcCCCCeEEEEEeC
Q 013605 160 MPYASRAFDMAHCSRCLIPWG-------AN-DGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 160 lp~~d~sFDlV~~~~~l~~~~-------~d-~~~~L~ei~RvLkPGG~liis~p 205 (439)
+|+++++||.|.+-...---. ++ ...+|+.+.++|++||++++..|
T Consensus 258 lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 258 LPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 999999999999854321110 11 15789999999999999999987
No 165
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.09 E-value=4.2e-05 Score=76.91 Aligned_cols=97 Identities=18% Similarity=0.268 Sum_probs=62.7
Q ss_pred chHHHHHHHHHhhcCCC------CCCCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC--e
Q 013605 83 QGADKYIDQLASVIPIK------NGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP--A 150 (439)
Q Consensus 83 ~g~~~~i~~l~~~l~~~------~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~--~ 150 (439)
++.-.|+..+.+++... .+...++||||||+|.....|+.+ .++++|+++..+..++...+...++. +
T Consensus 89 P~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I 168 (321)
T PRK11727 89 PGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAI 168 (321)
T ss_pred CcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcE
Confidence 45677888888886431 234568999999999888777664 48999999876666555444331343 3
Q ss_pred EEEE-ecccccC----CCCCCccEEEeccccccc
Q 013605 151 VIGV-LGTIKMP----YASRAFDMAHCSRCLIPW 179 (439)
Q Consensus 151 ~~~~-~d~~~lp----~~d~sFDlV~~~~~l~~~ 179 (439)
.+.. .+...+. .+++.||+|+|+..++.-
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~s 202 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCNPPFHAS 202 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeCCCCcCc
Confidence 3322 2222221 246789999999866443
No 166
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.09 E-value=1.2e-05 Score=75.99 Aligned_cols=120 Identities=21% Similarity=0.201 Sum_probs=78.7
Q ss_pred hHHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcC---CCeEEEEecc
Q 013605 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERG---VPAVIGVLGT 157 (439)
Q Consensus 84 g~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~---v~~vdis~~dis~a~i~~a~e~~---~~~~~~~~d~ 157 (439)
+.+.+.+.+.+.-......+.+|||.+.|-|+.+...+++| |.+++.+|.-+.-+.++- -.++ ..+.+..+|+
T Consensus 116 ~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNP-wSr~l~~~~i~iilGD~ 194 (287)
T COG2521 116 GTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNP-WSRELFEIAIKIILGDA 194 (287)
T ss_pred CcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCC-CCccccccccEEecccH
Confidence 34556666655543344456699999999999999999986 567777775443222210 0111 1356677777
Q ss_pred ccc--CCCCCCccEEEecccccccCCCh--HHHHHHHHHcCCCCeEEEEEe
Q 013605 158 IKM--PYASRAFDMAHCSRCLIPWGAND--GRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 158 ~~l--p~~d~sFDlV~~~~~l~~~~~d~--~~~L~ei~RvLkPGG~liis~ 204 (439)
.++ .|+|.|||+|+-...-....... ..+.+|+.|+|||||.++--+
T Consensus 195 ~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 195 YEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred HHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 443 38899999998643222222222 688999999999999998755
No 167
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.08 E-value=1.4e-05 Score=78.06 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=60.4
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCC
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA 163 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~ 163 (439)
...++.+.+.+....+ .+|||||||+|.++..++++ .++++|+++.++..+...+ .. ...+.+..+|+..++++
T Consensus 15 ~~~~~~iv~~~~~~~~--~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~-~~-~~~v~ii~~D~~~~~~~ 90 (258)
T PRK14896 15 DRVVDRIVEYAEDTDG--DPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDE-IA-AGNVEIIEGDALKVDLP 90 (258)
T ss_pred HHHHHHHHHhcCCCCc--CeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHh-cc-CCCEEEEEeccccCCch
Confidence 4556677777654433 48999999999999999987 4888988875544333222 11 23477888888877765
Q ss_pred CCCccEEEecccc
Q 013605 164 SRAFDMAHCSRCL 176 (439)
Q Consensus 164 d~sFDlV~~~~~l 176 (439)
.||.|+++..+
T Consensus 91 --~~d~Vv~NlPy 101 (258)
T PRK14896 91 --EFNKVVSNLPY 101 (258)
T ss_pred --hceEEEEcCCc
Confidence 48999998754
No 168
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.08 E-value=2.8e-05 Score=65.29 Aligned_cols=98 Identities=28% Similarity=0.412 Sum_probs=65.3
Q ss_pred EEEECCCCchHH--HHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEecccc--cCCCC-CCccEEEeccccc
Q 013605 106 ALDTGCGVASWG--AYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIK--MPYAS-RAFDMAHCSRCLI 177 (439)
Q Consensus 106 VLDIGCG~G~~~--~~La~~--~v~~vdis~~dis~a~i~~a~e~~~~-~~~~~~d~~~--lp~~d-~sFDlV~~~~~l~ 177 (439)
++|+|||+|... ..+... .++++|+++.++......... .... +.+...+... +++.. ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999954 334333 356667766544441111111 2222 4566666654 78877 589999 665555
Q ss_pred ccCCChHHHHHHHHHcCCCCeEEEEEeCC
Q 013605 178 PWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (439)
Q Consensus 178 ~~~~d~~~~L~ei~RvLkPGG~liis~p~ 206 (439)
++.. ....+.++.++|+|+|.+++....
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEecc
Confidence 5554 688999999999999999998653
No 169
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.05 E-value=1.7e-05 Score=74.93 Aligned_cols=109 Identities=16% Similarity=0.220 Sum_probs=74.5
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccc
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTI 158 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~a~i~~a~e~~~--~~~~~~~d~~ 158 (439)
..++..+++.. . .++||||||++|+.+.+|++. .++++|+++... +.+.++.++.|. .+.+..+++.
T Consensus 34 g~lL~~l~~~~---~--~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~-~~A~~~~~~ag~~~~I~~~~gda~ 107 (205)
T PF01596_consen 34 GQLLQMLVRLT---R--PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERA-EIARENFRKAGLDDRIEVIEGDAL 107 (205)
T ss_dssp HHHHHHHHHHH---T---SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHH-HHHHHHHHHTTGGGGEEEEES-HH
T ss_pred HHHHHHHHHhc---C--CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHH-HHHHHHHHhcCCCCcEEEEEeccH
Confidence 44455555544 2 238999999999999999974 389999988433 344445555554 3677777763
Q ss_pred c-cC-----CCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 159 K-MP-----YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 159 ~-lp-----~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
. ++ .+.+.||+|+.-. ...+...++..+.++|+|||.+++..
T Consensus 108 ~~l~~l~~~~~~~~fD~VFiDa----~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 108 EVLPELANDGEEGQFDFVFIDA----DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp HHHHHHHHTTTTTSEEEEEEES----TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred hhHHHHHhccCCCceeEEEEcc----cccchhhHHHHHhhhccCCeEEEEcc
Confidence 2 32 1246899999854 22334788999999999999999864
No 170
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.05 E-value=1.6e-05 Score=79.44 Aligned_cols=97 Identities=14% Similarity=0.151 Sum_probs=68.4
Q ss_pred CCEEEEECCCCchHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCCCe--EEEEecccccCCCCCCccEEEeccccc
Q 013605 103 VRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVPA--VIGVLGTIKMPYASRAFDMAHCSRCLI 177 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~~---v~~vdis~~dis~a~i~~a~e~~~~~--~~~~~d~~~lp~~d~sFDlV~~~~~l~ 177 (439)
.++|||||||+|-++..-++.| |.++|.|. +..-+.+.++.++... .+..+.++++.+|....|+|++-+...
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~--ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASS--IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCcceEEEEechH--HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 4599999999999998888875 78888764 5566666777777764 445556666666678899999865442
Q ss_pred ccC-CCh-HHHHHHHHHcCCCCeEEE
Q 013605 178 PWG-AND-GRYMIEVDRVLRPGGYWV 201 (439)
Q Consensus 178 ~~~-~d~-~~~L~ei~RvLkPGG~li 201 (439)
-.. +.. ...|-.=.+-|+|||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEc
Confidence 211 111 445555568899999876
No 171
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.04 E-value=1.4e-05 Score=78.76 Aligned_cols=84 Identities=15% Similarity=0.096 Sum_probs=59.6
Q ss_pred HHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCC
Q 013605 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (439)
Q Consensus 87 ~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d 164 (439)
..++.+.+.+....+ .+|||||||+|.++..++++ .++++|+++.++..+...+. ...+.+..+|+..+++++
T Consensus 29 ~i~~~i~~~l~~~~~--~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 29 NILDKIVDAAGPQPG--DNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA---EDNLTIIEGDALKVDLSE 103 (272)
T ss_pred HHHHHHHHhcCCCCc--CeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc---cCceEEEEChhhcCCHHH
Confidence 455667777654433 48999999999999999987 48999998865544432221 135778888988887664
Q ss_pred CCccEEEeccc
Q 013605 165 RAFDMAHCSRC 175 (439)
Q Consensus 165 ~sFDlV~~~~~ 175 (439)
-.+|.|+++..
T Consensus 104 ~~~~~vv~NlP 114 (272)
T PRK00274 104 LQPLKVVANLP 114 (272)
T ss_pred cCcceEEEeCC
Confidence 33688888763
No 172
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.02 E-value=2.4e-05 Score=70.57 Aligned_cols=112 Identities=18% Similarity=0.107 Sum_probs=82.9
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhCC-----cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccc
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN-----VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM 160 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~-----v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~l 160 (439)
.-..+.++..+... .+.-|||+|.|+|.++..+++++ +++++.++ .......+......++.+|+..+
T Consensus 34 s~lA~~M~s~I~pe--sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~-----dF~~~L~~~~p~~~ii~gda~~l 106 (194)
T COG3963 34 SILARKMASVIDPE--SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSP-----DFVCHLNQLYPGVNIINGDAFDL 106 (194)
T ss_pred HHHHHHHHhccCcc--cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCH-----HHHHHHHHhCCCccccccchhhH
Confidence 44556666666433 34479999999999999999985 56666655 44445556666677888887555
Q ss_pred C-----CCCCCccEEEecccccccCCCh-HHHHHHHHHcCCCCeEEEEEe
Q 013605 161 P-----YASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 161 p-----~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~liis~ 204 (439)
. +.+..||.|+|...+..++... .++|+++...|++||.++--.
T Consensus 107 ~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 107 RTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred HHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 3 5677899999987776666554 688999999999999988753
No 173
>PLN02672 methionine S-methyltransferase
Probab=98.01 E-value=8.5e-05 Score=84.97 Aligned_cols=102 Identities=16% Similarity=0.101 Sum_probs=70.4
Q ss_pred CCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcC-----------------CCeEEEEecccccC
Q 013605 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERG-----------------VPAVIGVLGTIKMP 161 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~-----------------~~~~~~~~d~~~lp 161 (439)
+.+|||+|||+|.++..++.. .++++|+++..+..+..+... .+ ..+.+..+|.....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~-n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYL-NALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-cCcccccccccccccccccccEEEEECchhhhc
Confidence 358999999999999999875 389999999766655554333 21 13667777764322
Q ss_pred CC-CCCccEEEecccccccC---------------------------------CCh----HHHHHHHHHcCCCCeEEEEE
Q 013605 162 YA-SRAFDMAHCSRCLIPWG---------------------------------AND----GRYMIEVDRVLRPGGYWVLS 203 (439)
Q Consensus 162 ~~-d~sFDlV~~~~~l~~~~---------------------------------~d~----~~~L~ei~RvLkPGG~liis 203 (439)
-. ...||+|+++...+.-. +|. ..++.++.++|+|||.+++.
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 11 23699999976543211 111 36778888999999999998
Q ss_pred eC
Q 013605 204 GP 205 (439)
Q Consensus 204 ~p 205 (439)
..
T Consensus 278 iG 279 (1082)
T PLN02672 278 MG 279 (1082)
T ss_pred EC
Confidence 64
No 174
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.97 E-value=5.6e-05 Score=73.52 Aligned_cols=84 Identities=14% Similarity=0.137 Sum_probs=56.9
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCC
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA 163 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~ 163 (439)
...++.+.+.+.... +.+|||||||+|.++..|+++ .++++|+++.++..+..... ....+.+..+|+..++++
T Consensus 15 ~~i~~~i~~~~~~~~--~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~--~~~~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 15 ESVIQKIVEAANVLE--GDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLS--LYERLEVIEGDALKVDLP 90 (253)
T ss_pred HHHHHHHHHhcCCCC--cCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhC--cCCcEEEEECchhcCChh
Confidence 445566666665433 448999999999999999987 48888888754433322111 123467788888777765
Q ss_pred CCCcc---EEEeccc
Q 013605 164 SRAFD---MAHCSRC 175 (439)
Q Consensus 164 d~sFD---lV~~~~~ 175 (439)
+|| +|+++..
T Consensus 91 --~~d~~~~vvsNlP 103 (253)
T TIGR00755 91 --DFPKQLKVVSNLP 103 (253)
T ss_pred --HcCCcceEEEcCC
Confidence 466 7777654
No 175
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.97 E-value=7.6e-05 Score=72.30 Aligned_cols=119 Identities=18% Similarity=0.245 Sum_probs=75.0
Q ss_pred HHHHHHHHhhcCCCC-CCCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEe-----
Q 013605 86 DKYIDQLASVIPIKN-GTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVL----- 155 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~-~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~----- 155 (439)
++.++.+.+.+.... ..+..+||+|||+|..+..++.. .++++|.|+..+.-+. +.|+..++...+.+.
T Consensus 131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~-eN~qr~~l~g~i~v~~~~me 209 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAK-ENAQRLKLSGRIEVIHNIME 209 (328)
T ss_pred HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHH-HHHHHHhhcCceEEEecccc
Confidence 666677766664222 12347999999999999888764 4888888775443332 233333333332222
Q ss_pred -cc-cccCCCCCCccEEEecccccccCCCh-------------------------HHHHHHHHHcCCCCeEEEEEeC
Q 013605 156 -GT-IKMPYASRAFDMAHCSRCLIPWGAND-------------------------GRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 156 -d~-~~lp~~d~sFDlV~~~~~l~~~~~d~-------------------------~~~L~ei~RvLkPGG~liis~p 205 (439)
+. ...+...+.+|+++|+...+.-.+.. ..++.-+.|.|+|||.+.+...
T Consensus 210 ~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 210 SDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred cccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 21 33446678999999987554321100 1456778899999999999864
No 176
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.95 E-value=3.9e-06 Score=81.63 Aligned_cols=96 Identities=23% Similarity=0.297 Sum_probs=70.6
Q ss_pred CCEEEEECCCCchHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEecccccccCCC
Q 013605 103 VRTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAN 182 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~~~d 182 (439)
+..+||+|||.|-.+..--...+++.|++. ..+..++..+.. ....+|+..+|+.+.+||.+++..++||+...
T Consensus 46 gsv~~d~gCGngky~~~~p~~~~ig~D~c~-----~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVNPLCLIIGCDLCT-----GLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred cceeeecccCCcccCcCCCcceeeecchhh-----hhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 458999999999654222112355555543 333344444432 56778999999999999999999999888765
Q ss_pred h--HHHHHHHHHcCCCCeEEEEEe
Q 013605 183 D--GRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 183 ~--~~~L~ei~RvLkPGG~liis~ 204 (439)
. ..+++|+.|+|||||...+..
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEE
Confidence 4 789999999999999987764
No 177
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.93 E-value=0.0001 Score=72.29 Aligned_cols=156 Identities=19% Similarity=0.287 Sum_probs=96.2
Q ss_pred HHHHHHHHhhcCC--CCCCCCEEEEECCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHc----C----------
Q 013605 86 DKYIDQLASVIPI--KNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALER----G---------- 147 (439)
Q Consensus 86 ~~~i~~l~~~l~~--~~~~~~~VLDIGCG~G~~~~~La~~~--v~~vdis~~dis~a~i~~a~e~----~---------- 147 (439)
...++.|.+.++. ......+||--|||.|+++..++.+| +.+.++|--|+-.. ++.... .
T Consensus 38 ~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s--~fiLn~~~~~~~~~I~Pf~~~ 115 (270)
T PF07942_consen 38 SPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLAS--NFILNHCSQPNQFTIYPFVHS 115 (270)
T ss_pred HHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHH--HHHHcccCCCCcEEEecceec
Confidence 5556677777652 22334689999999999999999997 66777766554222 122111 0
Q ss_pred ---------------C-------------CeEEEEecccccCCCC---CCccEEEecccccccCCChHHHHHHHHHcCCC
Q 013605 148 ---------------V-------------PAVIGVLGTIKMPYAS---RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRP 196 (439)
Q Consensus 148 ---------------~-------------~~~~~~~d~~~lp~~d---~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkP 196 (439)
+ ......+|...+..++ ++||+|++.+ ++.-..+.-.++..|.++|||
T Consensus 116 ~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F-FIDTA~Ni~~Yi~tI~~lLkp 194 (270)
T PF07942_consen 116 FSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF-FIDTAENIIEYIETIEHLLKP 194 (270)
T ss_pred ccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE-EeechHHHHHHHHHHHHHhcc
Confidence 0 0112223333332233 6899999876 445555668899999999999
Q ss_pred CeEEEEEeCCCCccccccccCCChHHHHHHHHHHHHHHHhcceeeecccC
Q 013605 197 GGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEKG 246 (439)
Q Consensus 197 GG~liis~p~~~~~~~~~~~~~~~e~l~~~~~~l~~l~~~l~W~~~~~~~ 246 (439)
||++|=.+|-. |...... ......++-.++++..+.+.+.|+.+.+..
T Consensus 195 gG~WIN~GPLl-yh~~~~~-~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 195 GGYWINFGPLL-YHFEPMS-IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCEEEecCCcc-ccCCCCC-CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 99777666533 3221110 011112444567788888899999876544
No 178
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.88 E-value=0.0001 Score=73.33 Aligned_cols=87 Identities=21% Similarity=0.234 Sum_probs=60.3
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHc-CCCeEEEEecccccCC
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIKMPY 162 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~a~i~~a~e~-~~~~~~~~~d~~~lp~ 162 (439)
...++.+.+.+....+ .+|||||||+|.++..+++. .++++|+++.++..+...++... ...+.+..+|+...++
T Consensus 22 ~~i~~~Iv~~~~~~~~--~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPT--DTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF 99 (294)
T ss_pred HHHHHHHHHhcCCCCc--CEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc
Confidence 4455677777654433 48999999999999999886 48999998865554443333221 2346778888766554
Q ss_pred CCCCccEEEecccc
Q 013605 163 ASRAFDMAHCSRCL 176 (439)
Q Consensus 163 ~d~sFDlV~~~~~l 176 (439)
..||.|+++..+
T Consensus 100 --~~~d~VvaNlPY 111 (294)
T PTZ00338 100 --PYFDVCVANVPY 111 (294)
T ss_pred --cccCEEEecCCc
Confidence 368999987644
No 179
>PLN02823 spermine synthase
Probab=97.88 E-value=9.6e-05 Score=74.88 Aligned_cols=102 Identities=14% Similarity=0.136 Sum_probs=67.1
Q ss_pred CCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHH----cCCCeEEEEecccc-cCCCCCCccEEEe
Q 013605 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE----RGVPAVIGVLGTIK-MPYASRAFDMAHC 172 (439)
Q Consensus 102 ~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e----~~~~~~~~~~d~~~-lp~~d~sFDlV~~ 172 (439)
..++||.||+|.|..+.++++. .++++|+++..+..+...+... ....+.+...|... +....++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4468999999999999988875 3788888874433222221111 12346677777633 3444678999998
Q ss_pred cccccccCCC------hHHHHH-HHHHcCCCCeEEEEEe
Q 013605 173 SRCLIPWGAN------DGRYMI-EVDRVLRPGGYWVLSG 204 (439)
Q Consensus 173 ~~~l~~~~~d------~~~~L~-ei~RvLkPGG~liis~ 204 (439)
.. ..++... ...+++ .+.+.|+|||++++..
T Consensus 183 D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 63 2222111 146777 8999999999998754
No 180
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.82 E-value=0.00049 Score=64.12 Aligned_cols=116 Identities=8% Similarity=-0.046 Sum_probs=69.6
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCCC--eEEEEecccc-
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIK- 159 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~---v~~vdis~~dis~a~i~~a~e~~~~--~~~~~~d~~~- 159 (439)
+...+.+...+... -.+.+|||++||+|.++..++.++ ++++|.++..+..+. +.+...+.. +.+..+|+..
T Consensus 34 ~~vrea~f~~l~~~-~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~-~N~~~~~~~~~~~~~~~D~~~~ 111 (189)
T TIGR00095 34 RVVRELFFNILRPE-IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLK-ENLALLKSGEQAEVVRNSALRA 111 (189)
T ss_pred HHHHHHHHHHHHHh-cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHhCCcccEEEEehhHHHH
Confidence 33334444444211 123489999999999999999984 788898875443333 334444443 5677777632
Q ss_pred cC-C-CC-CCccEEEecccccccCCChHHHHHHHH--HcCCCCeEEEEEeC
Q 013605 160 MP-Y-AS-RAFDMAHCSRCLIPWGANDGRYMIEVD--RVLRPGGYWVLSGP 205 (439)
Q Consensus 160 lp-~-~d-~sFDlV~~~~~l~~~~~d~~~~L~ei~--RvLkPGG~liis~p 205 (439)
+. + .. ..||+|+....+.. ......+..+. .+|+++|.+++..+
T Consensus 112 l~~~~~~~~~~dvv~~DPPy~~--~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 112 LKFLAKKPTFDNVIYLDPPFFN--GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred HHHhhccCCCceEEEECcCCCC--CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 32 2 12 24788887664321 12244555443 46899999888754
No 181
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.82 E-value=6.3e-05 Score=73.73 Aligned_cols=103 Identities=19% Similarity=0.306 Sum_probs=67.0
Q ss_pred CCCEEEEECCCCc----hHHHHHhhC---------CcEEEeCCccchHHHHHHH----HHHcCCC---------------
Q 013605 102 TVRTALDTGCGVA----SWGAYLWSR---------NVIAMSFAPRDSHEAQVQF----ALERGVP--------------- 149 (439)
Q Consensus 102 ~~~~VLDIGCG~G----~~~~~La~~---------~v~~vdis~~dis~a~i~~----a~e~~~~--------------- 149 (439)
..-+|+-+||++| +++..|.+. .+.|+||+...+..|..-. ...++++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4568999999999 344444432 3778888765554443210 0001111
Q ss_pred ----------eEEEEecccccCCCCCCccEEEecccccccCCCh-HHHHHHHHHcCCCCeEEEEEe
Q 013605 150 ----------AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 150 ----------~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~liis~ 204 (439)
+.|...+...-++..+.||+|+|.++++.+.... ..++..+...|+|||+|++..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 2333334322232456699999999999887554 789999999999999999964
No 182
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.80 E-value=3.9e-05 Score=78.33 Aligned_cols=98 Identities=21% Similarity=0.290 Sum_probs=75.3
Q ss_pred CEEEEECCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccccCCCCCCccEEEecccccc
Q 013605 104 RTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (439)
Q Consensus 104 ~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~ 178 (439)
..++|+|||.|....++... ++++++.++..+..+...... .++ ...+...+....|++++.||.+.+..+..|
T Consensus 112 ~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~-~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~ 190 (364)
T KOG1269|consen 112 SKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKK-AYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCH 190 (364)
T ss_pred ccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHH-HHhhhhcceehhhhhcCCCCccccCcEEEEeeccc
Confidence 37999999999988887764 577777776554444432222 222 234466778889999999999999998866
Q ss_pred cCCChHHHHHHHHHcCCCCeEEEEE
Q 013605 179 WGANDGRYMIEVDRVLRPGGYWVLS 203 (439)
Q Consensus 179 ~~~d~~~~L~ei~RvLkPGG~liis 203 (439)
.. +...+++|+.|+++|||+++..
T Consensus 191 ~~-~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 191 AP-DLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred CC-cHHHHHHHHhcccCCCceEEeH
Confidence 64 7899999999999999999985
No 183
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.0001 Score=68.88 Aligned_cols=91 Identities=19% Similarity=0.162 Sum_probs=62.3
Q ss_pred CCEEEEECCCCchHHHHHhhC----Cc--EEEeCCccchHHHHHHHHHHc---------------CCCeEEEEecccccC
Q 013605 103 VRTALDTGCGVASWGAYLWSR----NV--IAMSFAPRDSHEAQVQFALER---------------GVPAVIGVLGTIKMP 161 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~----~v--~~vdis~~dis~a~i~~a~e~---------------~~~~~~~~~d~~~lp 161 (439)
+.+.||+|.|+|+++..++.. +. ++++.-+ ..++.+++. ..+..+.++|....-
T Consensus 83 G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~-----eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~ 157 (237)
T KOG1661|consen 83 GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIP-----ELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGY 157 (237)
T ss_pred CcceeecCCCccHHHHHHHHHhcCCCccccchhhhH-----HHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccC
Confidence 348999999999998877643 44 5555544 333333221 123556677777766
Q ss_pred CCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 162 ~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
-+...||.|++.... ....+++...|++||.+++-..
T Consensus 158 ~e~a~YDaIhvGAaa-------~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 158 AEQAPYDAIHVGAAA-------SELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred CccCCcceEEEccCc-------cccHHHHHHhhccCCeEEEeec
Confidence 677889999997422 4456888899999999998654
No 184
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.79 E-value=6.3e-05 Score=75.36 Aligned_cols=95 Identities=21% Similarity=0.237 Sum_probs=71.2
Q ss_pred CCEEEEECCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecc-cccCCCCCCccEEEeccccccc
Q 013605 103 VRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT-IKMPYASRAFDMAHCSRCLIPW 179 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~-~~lp~~d~sFDlV~~~~~l~~~ 179 (439)
....+|+|.|.|..+..++.. .+.+++++...+.+++...+ .| +..+-+|. ++.|- -|+|++.++++||
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~--~g--V~~v~gdmfq~~P~----~daI~mkWiLhdw 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA--PG--VEHVAGDMFQDTPK----GDAIWMKWILHDW 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc--CC--cceecccccccCCC----cCeEEEEeecccC
Confidence 468999999999999998886 58888886544443333332 22 44444554 34543 3599999999999
Q ss_pred CCCh-HHHHHHHHHcCCCCeEEEEEeC
Q 013605 180 GAND-GRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 180 ~~d~-~~~L~ei~RvLkPGG~liis~p 205 (439)
.++. .++|+++...|+|||.+++...
T Consensus 250 tDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 9766 8999999999999999999764
No 185
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.75 E-value=0.00043 Score=63.94 Aligned_cols=116 Identities=16% Similarity=0.191 Sum_probs=71.9
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhh--CC-----------cEEEeCCccchHHHHHHHHHHcCCC--e
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWS--RN-----------VIAMSFAPRDSHEAQVQFALERGVP--A 150 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~--~~-----------v~~vdis~~dis~a~i~~a~e~~~~--~ 150 (439)
+.+...|..+.....+ ..|||--||+|++..+.+. .+ +.+.|+++..+..+.. .+...+.. +
T Consensus 14 ~~lA~~ll~la~~~~~--~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~-N~~~ag~~~~i 90 (179)
T PF01170_consen 14 PTLAAALLNLAGWRPG--DVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARE-NLKAAGVEDYI 90 (179)
T ss_dssp HHHHHHHHHHTT--TT--S-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHH-HHHHTT-CGGE
T ss_pred HHHHHHHHHHhCCCCC--CEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHH-HHHhcccCCce
Confidence 3344455566544433 4899999999999866543 23 4599999877655544 44555543 5
Q ss_pred EEEEecccccCCCCCCccEEEecccccccCCCh-------HHHHHHHHHcCCCCeEEEEEe
Q 013605 151 VIGVLGTIKMPYASRAFDMAHCSRCLIPWGAND-------GRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 151 ~~~~~d~~~lp~~d~sFDlV~~~~~l~~~~~d~-------~~~L~ei~RvLkPGG~liis~ 204 (439)
.+...|+..+++.++++|.|+++..+-.-.... ..+++++.++|++..+++++.
T Consensus 91 ~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~ 151 (179)
T PF01170_consen 91 DFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTS 151 (179)
T ss_dssp EEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEES
T ss_pred EEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Confidence 677889999998888999999987432111111 367899999999955555543
No 186
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.74 E-value=0.00021 Score=73.78 Aligned_cols=96 Identities=13% Similarity=0.137 Sum_probs=68.0
Q ss_pred CEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEecccccCCCCCCccEEEecccccc
Q 013605 104 RTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (439)
Q Consensus 104 ~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~-~~~~~~d~~~lp~~d~sFDlV~~~~~l~~ 178 (439)
.+|||++||+|.++..++.. .|+++|+++..+..+. +.++..++. ..+...|+..+....+.||+|++.. +
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~-~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIK-KNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 48999999999999998754 3899999885544333 344444454 4466777654322145799999864 1
Q ss_pred cCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 179 WGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 179 ~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
..+..++..+.+.+++||+++++..
T Consensus 135 --Gs~~~~l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 135 --GSPAPFLDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred --CCcHHHHHHHHHHhcCCCEEEEEec
Confidence 2346788887888999999999853
No 187
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.73 E-value=0.00041 Score=68.11 Aligned_cols=106 Identities=21% Similarity=0.322 Sum_probs=75.9
Q ss_pred CCCCEEEEECCCCchHHHHHhhC------CcEEEeCCccchHHHHHHHHHHcCCCe--EEEEecccc---cCCCCCCccE
Q 013605 101 GTVRTALDTGCGVASWGAYLWSR------NVIAMSFAPRDSHEAQVQFALERGVPA--VIGVLGTIK---MPYASRAFDM 169 (439)
Q Consensus 101 ~~~~~VLDIGCG~G~~~~~La~~------~v~~vdis~~dis~a~i~~a~e~~~~~--~~~~~d~~~---lp~~d~sFDl 169 (439)
+..-+||||.||.|......+.. .+...|+++..+. ...+.++++|+.. .|..+|+.+ +.--+-..++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~-~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVE-KGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHH-HHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 45568999999999887666553 3677788885443 3444677777763 677777633 2222445799
Q ss_pred EEecccccccCCCh--HHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 170 AHCSRCLIPWGAND--GRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 170 V~~~~~l~~~~~d~--~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
++.+..+.-+.++. ...+.-+.+.+.|||++|.+..|.
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPw 252 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPW 252 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCC
Confidence 99998776665443 467899999999999999997544
No 188
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.72 E-value=0.00016 Score=70.14 Aligned_cols=109 Identities=13% Similarity=0.107 Sum_probs=72.3
Q ss_pred HHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEecc
Q 013605 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGT 157 (439)
Q Consensus 85 ~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~a~i~~a~e~~~--~~~~~~~d~ 157 (439)
...++..+.+..+ .++|||||+++|+.+.+|+.. .++++|.++... +.+.++..+.|. .+.+..+++
T Consensus 67 ~g~lL~~l~~~~~-----ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~-~~Ar~~~~~ag~~~~I~~~~G~a 140 (247)
T PLN02589 67 EGQFLNMLLKLIN-----AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENY-ELGLPVIQKAGVAHKIDFREGPA 140 (247)
T ss_pred HHHHHHHHHHHhC-----CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHH-HHHHHHHHHCCCCCceEEEeccH
Confidence 3455555555542 238999999999999988864 389999977433 333333444453 356666765
Q ss_pred -cccCC------CCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEE
Q 013605 158 -IKMPY------ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (439)
Q Consensus 158 -~~lp~------~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis 203 (439)
+.|+- ..++||+|+.-. .......++..+.+.|+|||.+++.
T Consensus 141 ~e~L~~l~~~~~~~~~fD~iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 141 LPVLDQMIEDGKYHGTFDFIFVDA----DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred HHHHHHHHhccccCCcccEEEecC----CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 33331 136899999853 2223367888899999999998875
No 189
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.72 E-value=0.00028 Score=66.55 Aligned_cols=106 Identities=16% Similarity=0.153 Sum_probs=70.2
Q ss_pred HHHHHHHHhhcCCCCC--CCCEEEEECCCCchHHHHHhh-CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCC
Q 013605 86 DKYIDQLASVIPIKNG--TVRTALDTGCGVASWGAYLWS-RNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPY 162 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~--~~~~VLDIGCG~G~~~~~La~-~~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~ 162 (439)
...++.+.+....... ...++|||||=+......-.. -.|+.+|+.+. ...+...|....|.
T Consensus 33 K~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~fdvt~IDLns~---------------~~~I~qqDFm~rpl 97 (219)
T PF11968_consen 33 KWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGWFDVTRIDLNSQ---------------HPGILQQDFMERPL 97 (219)
T ss_pred HHHHHHhhhhccccccccccceEEeecccCCCCcccccCceeeEEeecCCC---------------CCCceeeccccCCC
Confidence 4455555555432211 236899999986654332222 14888888652 12344556655554
Q ss_pred ---CCCCccEEEecccccccCCCh---HHHHHHHHHcCCCCeE-----EEEEeCCC
Q 013605 163 ---ASRAFDMAHCSRCLIPWGAND---GRYMIEVDRVLRPGGY-----WVLSGPPI 207 (439)
Q Consensus 163 ---~d~sFDlV~~~~~l~~~~~d~---~~~L~ei~RvLkPGG~-----liis~p~~ 207 (439)
++++||+|.|+.++. +.+++ +.+++.+.+.|+|+|. ++++.|..
T Consensus 98 p~~~~e~FdvIs~SLVLN-fVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~ 152 (219)
T PF11968_consen 98 PKNESEKFDVISLSLVLN-FVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP 152 (219)
T ss_pred CCCcccceeEEEEEEEEe-eCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch
Confidence 367899999999884 44455 7899999999999999 88887644
No 190
>PRK04148 hypothetical protein; Provisional
Probab=97.70 E-value=0.00043 Score=60.82 Aligned_cols=100 Identities=12% Similarity=0.080 Sum_probs=64.1
Q ss_pred HHHHHhhcCCCCCCCCEEEEECCCCch-HHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCC-C
Q 013605 89 IDQLASVIPIKNGTVRTALDTGCGVAS-WGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA-S 164 (439)
Q Consensus 89 i~~l~~~l~~~~~~~~~VLDIGCG~G~-~~~~La~~~--v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~-d 164 (439)
.+.|.+.+... ++.+|||||||+|. ++..|++.| |+++|+++ ..++.+++.+. .+.+.|...-.+. -
T Consensus 5 ~~~l~~~~~~~--~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~-----~aV~~a~~~~~--~~v~dDlf~p~~~~y 75 (134)
T PRK04148 5 AEFIAENYEKG--KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINE-----KAVEKAKKLGL--NAFVDDLFNPNLEIY 75 (134)
T ss_pred HHHHHHhcccc--cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHhCC--eEEECcCCCCCHHHH
Confidence 34455555332 33589999999996 888898876 77777766 35666676654 4555566544433 4
Q ss_pred CCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEE
Q 013605 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (439)
Q Consensus 165 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis 203 (439)
+.+|+|++.+.- .+....+.++.+-+ |.-+++.
T Consensus 76 ~~a~liysirpp----~el~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 76 KNAKLIYSIRPP----RDLQPFILELAKKI--NVPLIIK 108 (134)
T ss_pred hcCCEEEEeCCC----HHHHHHHHHHHHHc--CCCEEEE
Confidence 679999998732 34455666666554 4445554
No 191
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.69 E-value=4.2e-05 Score=74.45 Aligned_cols=117 Identities=18% Similarity=0.278 Sum_probs=67.8
Q ss_pred HHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC---CcEEEeCCccchHHHHHH---------------HHHHcCC-
Q 013605 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQ---------------FALERGV- 148 (439)
Q Consensus 88 ~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~a~i~---------------~a~e~~~- 148 (439)
.+..+.+.+.....++.++||||||.-.+-..-+.. .++..|.++....+.... .+...|.
T Consensus 42 ~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~ 121 (256)
T PF01234_consen 42 FLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKR 121 (256)
T ss_dssp HHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCc
Confidence 444555555433445679999999986543222222 588888877533221111 1111110
Q ss_pred ------------C-eEEEEecccc-cCCCC-----CCccEEEecccccccCCCh---HHHHHHHHHcCCCCeEEEEEe
Q 013605 149 ------------P-AVIGVLGTIK-MPYAS-----RAFDMAHCSRCLIPWGAND---GRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 149 ------------~-~~~~~~d~~~-lp~~d-----~sFDlV~~~~~l~~~~~d~---~~~L~ei~RvLkPGG~liis~ 204 (439)
. ..+..+|... -|+.. ..||+|++++|+.....+. ..+++++.++|||||.|++.+
T Consensus 122 ~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 122 EKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp SGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred chhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 0 1244556533 33433 2599999999998777776 588999999999999999975
No 192
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.68 E-value=9.3e-05 Score=77.81 Aligned_cols=96 Identities=18% Similarity=0.233 Sum_probs=62.0
Q ss_pred CCEEEEECCCCchHHHHHhhC--------CcEEEeCCccchHHHHHHHHHHcC--CCeEEEEecccccCCCCCCccEEEe
Q 013605 103 VRTALDTGCGVASWGAYLWSR--------NVIAMSFAPRDSHEAQVQFALERG--VPAVIGVLGTIKMPYASRAFDMAHC 172 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~--------~v~~vdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~lp~~d~sFDlV~~ 172 (439)
...|||||||+|-++...++. .|.+++-++......+ +..+..+ -.+.++.+|++.+..+. .+|+|++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~-~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ-KRVNANGWGDKVTVIHGDMREVELPE-KVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH-HHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH-HHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEE
Confidence 358999999999988665543 4888888875332222 2223333 35788888998877654 7999998
Q ss_pred cccccccCCCh--HHHHHHHHHcCCCCeEEE
Q 013605 173 SRCLIPWGAND--GRYMIEVDRVLRPGGYWV 201 (439)
Q Consensus 173 ~~~l~~~~~d~--~~~L~ei~RvLkPGG~li 201 (439)
-... .+..+. ...|....|.|||||.++
T Consensus 265 ElLG-sfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 265 ELLG-SFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---B-TTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eccC-CccccccCHHHHHHHHhhcCCCCEEe
Confidence 5433 232222 577889999999999876
No 193
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.63 E-value=0.00023 Score=65.40 Aligned_cols=105 Identities=20% Similarity=0.310 Sum_probs=59.5
Q ss_pred HHHHHhhcC-CCCCCCCEEEEECCCCchHHHHHhhCC-----cEEEeCCccchHHHHHHHHHHcCCCeEEEEecc-----
Q 013605 89 IDQLASVIP-IKNGTVRTALDTGCGVASWGAYLWSRN-----VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT----- 157 (439)
Q Consensus 89 i~~l~~~l~-~~~~~~~~VLDIGCG~G~~~~~La~~~-----v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~----- 157 (439)
+.++.+... ...+...+|||+||++|.|+..+++++ |+++|+.+.... .......+|.
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~-----------~~~~~i~~d~~~~~~ 77 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL-----------QNVSFIQGDITNPEN 77 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS------------TTEEBTTGGGEEEEH
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc-----------cceeeeecccchhhH
Confidence 345555555 334456799999999999999999874 788888764110 1112212221
Q ss_pred -ccc----CCCCCCccEEEecccccccCCC----h-------HHHHHHHHHcCCCCeEEEEEeC
Q 013605 158 -IKM----PYASRAFDMAHCSRCLIPWGAN----D-------GRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 158 -~~l----p~~d~sFDlV~~~~~l~~~~~d----~-------~~~L~ei~RvLkPGG~liis~p 205 (439)
..+ +-..+.||+|+|-.+. ....+ . ...+.-+...|+|||.+++-..
T Consensus 78 ~~~i~~~~~~~~~~~dlv~~D~~~-~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 78 IKDIRKLLPESGEKFDLVLSDMAP-NVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp SHHGGGSHGTTTCSESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred HHhhhhhccccccCcceecccccc-CCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 111 1123689999997632 22111 1 1345555678999999988653
No 194
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.62 E-value=0.00029 Score=73.35 Aligned_cols=99 Identities=19% Similarity=0.287 Sum_probs=79.2
Q ss_pred EEEEECCCCchHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEecccccccCC
Q 013605 105 TALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGA 181 (439)
Q Consensus 105 ~VLDIGCG~G~~~~~La~~~---v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~~~ 181 (439)
++|-+|||.-.+...+.+.| ++.+|+|+..++..++..+ .......+...|...+.|+++|||+|+.-..+.+...
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 89999999999999998874 8888998877766555555 2234567788899999999999999998887776655
Q ss_pred ChH---------HHHHHHHHcCCCCeEEEEEe
Q 013605 182 NDG---------RYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 182 d~~---------~~L~ei~RvLkPGG~liis~ 204 (439)
+.. ..+.++.|+|++||.++..+
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 130 DEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred CchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 432 45799999999999877654
No 195
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.60 E-value=0.00034 Score=65.75 Aligned_cols=120 Identities=14% Similarity=0.110 Sum_probs=74.3
Q ss_pred eeecCCCCCCCcchHHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhh--C--CcEEEeCCccchHHHHHHHHHHc
Q 013605 71 VFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWS--R--NVIAMSFAPRDSHEAQVQFALER 146 (439)
Q Consensus 71 ~~~fp~~~~~f~~g~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~--~--~v~~vdis~~dis~a~i~~a~e~ 146 (439)
.|.+.-....|..+-..-..++.+.+ .+ +.+|||+-||.|.|+..++. + .|.++|++|. ..+...+.++..
T Consensus 74 ~f~~D~~kvyfs~rl~~Er~Ri~~~v--~~--~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~-a~~~L~~Ni~lN 148 (200)
T PF02475_consen 74 RFKVDLSKVYFSPRLSTERRRIANLV--KP--GEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPD-AVEYLKENIRLN 148 (200)
T ss_dssp EEEEETTTS---GGGHHHHHHHHTC----T--T-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HH-HHHHHHHHHHHT
T ss_pred EEEEccceEEEccccHHHHHHHHhcC--Cc--ceEEEEccCCccHHHHHHhhhcCccEEEEecCCHH-HHHHHHHHHHHc
Confidence 44444455566666655555677665 23 44999999999999999998 3 3999999984 444555556655
Q ss_pred CCC--eEEEEecccccCCCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEE
Q 013605 147 GVP--AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWV 201 (439)
Q Consensus 147 ~~~--~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~li 201 (439)
++. +....+|...+.. .+.||-|++.. +.....+|..+.+++++||.+-
T Consensus 149 kv~~~i~~~~~D~~~~~~-~~~~drvim~l-----p~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 149 KVENRIEVINGDAREFLP-EGKFDRVIMNL-----PESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp T-TTTEEEEES-GGG----TT-EEEEEE-------TSSGGGGHHHHHHHEEEEEEEE
T ss_pred CCCCeEEEEcCCHHHhcC-ccccCEEEECC-----hHHHHHHHHHHHHHhcCCcEEE
Confidence 555 4567778766654 78899999865 2233568899999999999874
No 196
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.00064 Score=62.31 Aligned_cols=101 Identities=20% Similarity=0.278 Sum_probs=71.2
Q ss_pred CCEEEEECCCCchHHHHHhhC-C----cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEeccccc
Q 013605 103 VRTALDTGCGVASWGAYLWSR-N----VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~-~----v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~ 177 (439)
...+||||||+|..+..|++. + +.++|++|.. .++..+-|+.++..+..+..|...- ...++.|+++-+..+.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A-~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEA-LEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHH-HHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcC
Confidence 347999999999999999886 2 7889999853 3455667777777666666665221 2238899998876554
Q ss_pred ccCCCh--------------------HHHHHHHHHcCCCCeEEEEEeC
Q 013605 178 PWGAND--------------------GRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 178 ~~~~d~--------------------~~~L~ei~RvLkPGG~liis~p 205 (439)
.-.+++ +.++..+..+|.|.|.|++..-
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 322111 2566777788899999999864
No 197
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.54 E-value=0.0014 Score=69.27 Aligned_cols=104 Identities=15% Similarity=0.149 Sum_probs=69.9
Q ss_pred CCCEEEEECCCCchHHHHHhhC----C-cEEEeCCccchHHHHHHHHHHcCCCe-EEEEecccccC-CCCCCccEEE---
Q 013605 102 TVRTALDTGCGVASWGAYLWSR----N-VIAMSFAPRDSHEAQVQFALERGVPA-VIGVLGTIKMP-YASRAFDMAH--- 171 (439)
Q Consensus 102 ~~~~VLDIGCG~G~~~~~La~~----~-v~~vdis~~dis~a~i~~a~e~~~~~-~~~~~d~~~lp-~~d~sFDlV~--- 171 (439)
++.+|||++||.|.=+.++++. | +++.|+++.-+ +...+.+...|+.. .+...|...++ ...+.||.|+
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~-~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRV-KVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 4459999999999988888774 3 88899987433 33334444556653 45556665543 2345799999
Q ss_pred -ecccccccCCCh------------------HHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 172 -CSRCLIPWGAND------------------GRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 172 -~~~~l~~~~~d~------------------~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
|+... .+..++ ..+|..+.+.|||||+++.++...
T Consensus 192 PCSG~G-~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 192 PCSGEG-TVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred CCCCCc-ccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 55332 111111 367889999999999999887544
No 198
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.53 E-value=0.00014 Score=67.75 Aligned_cols=132 Identities=17% Similarity=0.192 Sum_probs=85.0
Q ss_pred CeeecCCCCCCCcchHHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcC
Q 013605 70 NVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERG 147 (439)
Q Consensus 70 d~~~fp~~~~~f~~g~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~a~i~~a~e~~ 147 (439)
+---|.|-|.+|.-..+++...+.---+..+....++||+|+|.|..+..++.. .|.++++ +..++...++.+
T Consensus 80 dING~lgrGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATEl-----S~tMr~rL~kk~ 154 (288)
T KOG3987|consen 80 DINGFLGRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATEL-----SWTMRDRLKKKN 154 (288)
T ss_pred ccccccccCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHh-----hHHHHHHHhhcC
Confidence 333477788888777777654443222222334569999999999999888876 3555544 445555555554
Q ss_pred CCeEEEEecccccCCCCCCccEEEecccccccCCChHHHHHHHHHcCCC-CeEEEEEe--CCCCccc
Q 013605 148 VPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRP-GGYWVLSG--PPINWKT 211 (439)
Q Consensus 148 ~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkP-GG~liis~--p~~~~~~ 211 (439)
..+. ...+..-.+-.||+|.|...+ .-..++..+|+.+..+|+| +|.+|++- |-..+.+
T Consensus 155 ynVl----~~~ew~~t~~k~dli~clNlL-DRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE 216 (288)
T KOG3987|consen 155 YNVL----TEIEWLQTDVKLDLILCLNLL-DRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVE 216 (288)
T ss_pred Ccee----eehhhhhcCceeehHHHHHHH-HhhcChHHHHHHHHHHhccCCCcEEEEEEecccceee
Confidence 3222 222222234569999998866 3344779999999999999 89888753 4444433
No 199
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.51 E-value=0.00056 Score=69.92 Aligned_cols=113 Identities=15% Similarity=0.075 Sum_probs=72.2
Q ss_pred HHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccc-
Q 013605 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKM- 160 (439)
Q Consensus 85 ~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~l- 160 (439)
.+.+++.+.+.+.... .+|||++||+|.++..|++. .++++|+++.++..+.. .+...++ .+.+..+|+..+
T Consensus 183 ~~~l~~~v~~~~~~~~---~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~-n~~~~~~~~v~~~~~d~~~~~ 258 (353)
T TIGR02143 183 NIKMLEWACEVTQGSK---GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQY-NIAANNIDNVQIIRMSAEEFT 258 (353)
T ss_pred HHHHHHHHHHHhhcCC---CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHH-HHHHcCCCcEEEEEcCHHHHH
Confidence 3556666666664222 26999999999999988875 59999999876655443 4445555 466777776442
Q ss_pred C-------C---C-----CCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 161 P-------Y---A-----SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 161 p-------~---~-----d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
+ + . ...||+|+....- ..-...+++.+. +|++.++++..|.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR---~G~~~~~l~~l~---~~~~ivYvsC~p~ 314 (353)
T TIGR02143 259 QAMNGVREFRRLKGIDLKSYNCSTIFVDPPR---AGLDPDTCKLVQ---AYERILYISCNPE 314 (353)
T ss_pred HHHhhccccccccccccccCCCCEEEECCCC---CCCcHHHHHHHH---cCCcEEEEEcCHH
Confidence 1 1 0 1238999886532 111144555544 4899999986543
No 200
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.47 E-value=0.00022 Score=71.20 Aligned_cols=117 Identities=16% Similarity=0.251 Sum_probs=71.5
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhh---------C--CcEEEeCCccchHHHHHHHHHHcCCC---eE
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWS---------R--NVIAMSFAPRDSHEAQVQFALERGVP---AV 151 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~---------~--~v~~vdis~~dis~a~i~~a~e~~~~---~~ 151 (439)
....+.+.+++.... +.+|||.+||+|.|...+.+ . .+.|+|+++....-+...... ++.. ..
T Consensus 32 ~~i~~l~~~~~~~~~--~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l-~~~~~~~~~ 108 (311)
T PF02384_consen 32 REIVDLMVKLLNPKK--GDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL-HGIDNSNIN 108 (311)
T ss_dssp HHHHHHHHHHHTT-T--TEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH-TTHHCBGCE
T ss_pred HHHHHHHHhhhhccc--cceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh-hcccccccc
Confidence 556677777774433 34899999999999887765 2 478888877655444444333 2222 23
Q ss_pred EEEecccccCC-C-CCCccEEEeccccccc--CC---------------C--h-HHHHHHHHHcCCCCeEEEEEeC
Q 013605 152 IGVLGTIKMPY-A-SRAFDMAHCSRCLIPW--GA---------------N--D-GRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 152 ~~~~d~~~lp~-~-d~sFDlV~~~~~l~~~--~~---------------d--~-~~~L~ei~RvLkPGG~liis~p 205 (439)
+...|....+. . ...||+|+++..+... .. . . ..++..+.+.|++||.+.+..|
T Consensus 109 i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 109 IIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp EEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 56666543332 2 5789999997655322 10 0 0 2678889999999999988876
No 201
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.41 E-value=0.00049 Score=63.83 Aligned_cols=119 Identities=13% Similarity=0.094 Sum_probs=73.3
Q ss_pred chHHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCCC--eEEEEecc
Q 013605 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGT 157 (439)
Q Consensus 83 ~g~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~---v~~vdis~~dis~a~i~~a~e~~~~--~~~~~~d~ 157 (439)
+..+...+.+.+++....-.+.++||+=||+|.++...+.+| |+.+|.++..+. ...+.+..-+.. ..+...|+
T Consensus 23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~-~i~~N~~~l~~~~~~~v~~~d~ 101 (183)
T PF03602_consen 23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIK-IIKKNLEKLGLEDKIRVIKGDA 101 (183)
T ss_dssp SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHH-HHHHHHHHHT-GGGEEEEESSH
T ss_pred CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHH-HHHHHHHHhCCCcceeeeccCH
Confidence 334555566666664321234589999999999999999986 788888774332 333334433433 56666664
Q ss_pred -cccC---CCCCCccEEEecccccccCCCh--HHHHHHHH--HcCCCCeEEEEEeC
Q 013605 158 -IKMP---YASRAFDMAHCSRCLIPWGAND--GRYMIEVD--RVLRPGGYWVLSGP 205 (439)
Q Consensus 158 -~~lp---~~d~sFDlV~~~~~l~~~~~d~--~~~L~ei~--RvLkPGG~liis~p 205 (439)
..++ .....||+|++... +.... ..++..+. ..|+++|.+++...
T Consensus 102 ~~~l~~~~~~~~~fDiIflDPP---Y~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 102 FKFLLKLAKKGEKFDIIFLDPP---YAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HHHHHHHHHCTS-EEEEEE--S---TTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HHHHHhhcccCCCceEEEECCC---cccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 2232 24688999999873 33332 56777776 78999999999864
No 202
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.41 E-value=0.0018 Score=64.01 Aligned_cols=97 Identities=15% Similarity=0.194 Sum_probs=67.1
Q ss_pred CCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc---------CCCeEEEEecccc-cCCCCCCc
Q 013605 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALER---------GVPAVIGVLGTIK-MPYASRAF 167 (439)
Q Consensus 102 ~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~---------~~~~~~~~~d~~~-lp~~d~sF 167 (439)
..++||-||-|.|..++.+++. .++.+||++ +.++.+++. ...+.+...|... +.-...+|
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~-----~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~f 150 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDP-----AVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKF 150 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCH-----HHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcC
Confidence 3469999999999999999987 488888877 344445443 1334556666532 33233489
Q ss_pred cEEEecccccccCC----ChHHHHHHHHHcCCCCeEEEEEe
Q 013605 168 DMAHCSRCLIPWGA----NDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 168 DlV~~~~~l~~~~~----d~~~~L~ei~RvLkPGG~liis~ 204 (439)
|+|++.. .-+..+ ....+++.+.+.|+++|.++.-.
T Consensus 151 DvIi~D~-tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 151 DVIIVDS-TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CEEEEcC-CCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 9999854 212111 11689999999999999999874
No 203
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.40 E-value=0.00081 Score=68.98 Aligned_cols=112 Identities=15% Similarity=0.101 Sum_probs=72.1
Q ss_pred HHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccc-c
Q 013605 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIK-M 160 (439)
Q Consensus 85 ~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~-l 160 (439)
.+.+++.+.+.+... ..+|||++||+|.++..|++. .|+++|+++.++..+. +.+...++ .+.+..+|+.. +
T Consensus 192 ~e~l~~~v~~~~~~~---~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~-~N~~~~~~~~v~~~~~d~~~~l 267 (362)
T PRK05031 192 NEKMLEWALDATKGS---KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQ-YNIAANGIDNVQIIRMSAEEFT 267 (362)
T ss_pred HHHHHHHHHHHhhcC---CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHH-HHHHHhCCCcEEEEECCHHHHH
Confidence 355666666665322 136999999999999988875 4999999987665444 34555555 46777777644 2
Q ss_pred C-CC--------------CCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeCC
Q 013605 161 P-YA--------------SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (439)
Q Consensus 161 p-~~--------------d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p~ 206 (439)
+ +. ...||+|+..... ..-...+++.+.+ |++.++++..|
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR---~G~~~~~l~~l~~---~~~ivyvSC~p 322 (362)
T PRK05031 268 QAMNGVREFNRLKGIDLKSYNFSTIFVDPPR---AGLDDETLKLVQA---YERILYISCNP 322 (362)
T ss_pred HHHhhcccccccccccccCCCCCEEEECCCC---CCCcHHHHHHHHc---cCCEEEEEeCH
Confidence 1 10 2258999987632 1112445555543 78888888654
No 204
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.002 Score=62.79 Aligned_cols=87 Identities=16% Similarity=0.082 Sum_probs=62.1
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCC
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA 163 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~--v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~ 163 (439)
...++.|.+...... +.+|||||+|.|.++..|++++ |+++++++..+ +...+... ......++.+|+...+++
T Consensus 16 ~~v~~kIv~~a~~~~--~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~-~~L~~~~~-~~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 16 KNVIDKIVEAANISP--GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLA-EVLKERFA-PYDNLTVINGDALKFDFP 91 (259)
T ss_pred HHHHHHHHHhcCCCC--CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHH-HHHHHhcc-cccceEEEeCchhcCcch
Confidence 445778888876555 4599999999999999999984 89999987433 22221111 234577888898888777
Q ss_pred CC-CccEEEecccc
Q 013605 164 SR-AFDMAHCSRCL 176 (439)
Q Consensus 164 d~-sFDlV~~~~~l 176 (439)
+- .++.|+++..+
T Consensus 92 ~l~~~~~vVaNlPY 105 (259)
T COG0030 92 SLAQPYKVVANLPY 105 (259)
T ss_pred hhcCCCEEEEcCCC
Confidence 54 68999998633
No 205
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.31 E-value=0.0024 Score=64.33 Aligned_cols=114 Identities=8% Similarity=0.024 Sum_probs=70.9
Q ss_pred HHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC--------CcEEEeCCccchHHHHHHHHHHcCCCeEE--EEecc
Q 013605 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--------NVIAMSFAPRDSHEAQVQFALERGVPAVI--GVLGT 157 (439)
Q Consensus 88 ~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~--------~v~~vdis~~dis~a~i~~a~e~~~~~~~--~~~d~ 157 (439)
....|++.+ +.+.+++|+|||.|.=+..|++. .++++|||...+..+..+...+....+.+ .+++.
T Consensus 66 ~~~~Ia~~i----~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy 141 (319)
T TIGR03439 66 HSSDIAASI----PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTY 141 (319)
T ss_pred HHHHHHHhc----CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecH
Confidence 334555555 23348999999999876665542 38899998876666655554233333433 45554
Q ss_pred cc----cCC--CCCCccEEEecc-cccccCCCh-HHHHHHHHH-cCCCCeEEEEEeC
Q 013605 158 IK----MPY--ASRAFDMAHCSR-CLIPWGAND-GRYMIEVDR-VLRPGGYWVLSGP 205 (439)
Q Consensus 158 ~~----lp~--~d~sFDlV~~~~-~l~~~~~d~-~~~L~ei~R-vLkPGG~liis~p 205 (439)
.. ++- ......+++.-. ++-.+.++. ..+|+++.+ .|+|||.|++...
T Consensus 142 ~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D 198 (319)
T TIGR03439 142 DDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLD 198 (319)
T ss_pred HHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecC
Confidence 22 322 123467777544 333443322 688999999 9999999999753
No 206
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.30 E-value=0.0015 Score=64.53 Aligned_cols=114 Identities=16% Similarity=0.078 Sum_probs=64.7
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEE--Eecc-
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIG--VLGT- 157 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~a~i~~a~e~~~~~~~~--~~d~- 157 (439)
...++++.+.++.. .+++|||+|||+|.-+..+.+. .++++|.|+.++..+.. .... ....... ....
T Consensus 19 ~~vl~El~~r~p~f--~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~-l~~~-~~~~~~~~~~~~~~ 94 (274)
T PF09243_consen 19 YRVLSELRKRLPDF--RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKR-LLRA-GPNNRNAEWRRVLY 94 (274)
T ss_pred HHHHHHHHHhCcCC--CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHH-HHhc-ccccccchhhhhhh
Confidence 34455666555432 3458999999999766554442 47788877755432221 2221 1111110 1111
Q ss_pred -cccCCCCCCccEEEecccccccCCCh-HHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 158 -IKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 158 -~~lp~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
...++. ..|+|++++++....+.. ..+++.+.+.+.+ +++|..|..
T Consensus 95 ~~~~~~~--~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt 142 (274)
T PF09243_consen 95 RDFLPFP--PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGT 142 (274)
T ss_pred cccccCC--CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCC
Confidence 122332 239999999998877532 5566666666655 888887754
No 207
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.0015 Score=61.41 Aligned_cols=113 Identities=12% Similarity=0.114 Sum_probs=71.2
Q ss_pred CcchHHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEe
Q 013605 81 FPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVL 155 (439)
Q Consensus 81 f~~g~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~ 155 (439)
+...+..-+.+|.+....- ..+.+|+|+|+-.|+++..+++. .|+++|+.|.+.. ..+.+.++
T Consensus 25 yRSRAa~KL~el~~k~~i~-~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~-----------~~V~~iq~ 92 (205)
T COG0293 25 YRSRAAYKLLELNEKFKLF-KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI-----------PGVIFLQG 92 (205)
T ss_pred ccchHHHHHHHHHHhcCee-cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC-----------CCceEEee
Confidence 3344444444555554332 23459999999999999988876 2899999885432 22566666
Q ss_pred cccccC--------CCCCCccEEEecccc---cccCCCh-------HHHHHHHHHcCCCCeEEEEEeC
Q 013605 156 GTIKMP--------YASRAFDMAHCSRCL---IPWGAND-------GRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 156 d~~~lp--------~~d~sFDlV~~~~~l---~~~~~d~-------~~~L~ei~RvLkPGG~liis~p 205 (439)
|+..-+ +....+|+|+|-..- -++..|. ..++.-+..+|+|||.|++-..
T Consensus 93 d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 93 DITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred eccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 653322 344557999975432 1121121 2456667789999999998753
No 208
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.27 E-value=0.0014 Score=62.33 Aligned_cols=109 Identities=18% Similarity=0.199 Sum_probs=73.0
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEecc-
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGT- 157 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~a~i~~a~e~~~~--~~~~~~d~- 157 (439)
.++++.+.+++ .++ ++||||.=+|+.+..++.. .|+++|+++...... .++.+..+.. +.+.++.+
T Consensus 62 g~fl~~li~~~---~ak--~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~-~~~~k~agv~~KI~~i~g~a~ 135 (237)
T KOG1663|consen 62 GQFLQMLIRLL---NAK--RTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIG-LELVKLAGVDHKITFIEGPAL 135 (237)
T ss_pred HHHHHHHHHHh---CCc--eEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHh-HHHHHhccccceeeeeecchh
Confidence 44555555554 333 8999998888766666554 399999987444333 4455555554 45555554
Q ss_pred cccC-----CCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 158 IKMP-----YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 158 ~~lp-----~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
+.|+ .+.++||+|+.- ++-.....+..++.++||+||++++..
T Consensus 136 esLd~l~~~~~~~tfDfaFvD----adK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 136 ESLDELLADGESGTFDFAFVD----ADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred hhHHHHHhcCCCCceeEEEEc----cchHHHHHHHHHHHhhcccccEEEEec
Confidence 2222 457899999874 454444789999999999999999853
No 209
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.21 E-value=0.002 Score=69.34 Aligned_cols=75 Identities=12% Similarity=0.045 Sum_probs=40.7
Q ss_pred CCEEEEECCCCchHHHHHhhC------------CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc--c---CCCCC
Q 013605 103 VRTALDTGCGVASWGAYLWSR------------NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK--M---PYASR 165 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~------------~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~--l---p~~d~ 165 (439)
..+|||.|||+|.++..++.. .+.++|+++..+..+......-......+...+... . .-..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 458999999999999877653 245666655333322222211111223333333211 1 11125
Q ss_pred CccEEEeccccc
Q 013605 166 AFDMAHCSRCLI 177 (439)
Q Consensus 166 sFDlV~~~~~l~ 177 (439)
.||+|+++..+.
T Consensus 112 ~fD~IIgNPPy~ 123 (524)
T TIGR02987 112 LFDIVITNPPYG 123 (524)
T ss_pred cccEEEeCCCcc
Confidence 799999987554
No 210
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.18 E-value=0.0015 Score=63.52 Aligned_cols=86 Identities=19% Similarity=0.136 Sum_probs=58.7
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcC-CCeEEEEecccccCC
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERG-VPAVIGVLGTIKMPY 162 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~--v~~vdis~~dis~a~i~~a~e~~-~~~~~~~~d~~~lp~ 162 (439)
...++.|.+..+...++ .|||||.|||.++..|++.+ |++++++|.++.+-.......-. ....+.++|....++
T Consensus 44 p~v~~~I~~ka~~k~tD--~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~ 121 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTD--VVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL 121 (315)
T ss_pred HHHHHHHHhccCCCCCC--EEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC
Confidence 44556666666555555 99999999999999999984 99999999877655443321111 124556666655443
Q ss_pred CCCCccEEEeccc
Q 013605 163 ASRAFDMAHCSRC 175 (439)
Q Consensus 163 ~d~sFDlV~~~~~ 175 (439)
-.||.++++..
T Consensus 122 --P~fd~cVsNlP 132 (315)
T KOG0820|consen 122 --PRFDGCVSNLP 132 (315)
T ss_pred --cccceeeccCC
Confidence 35999998753
No 211
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.14 E-value=0.00094 Score=64.84 Aligned_cols=102 Identities=18% Similarity=0.170 Sum_probs=67.0
Q ss_pred CCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc----CCCeEEEEecccc-cCCCCC-CccEEE
Q 013605 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALER----GVPAVIGVLGTIK-MPYASR-AFDMAH 171 (439)
Q Consensus 102 ~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~----~~~~~~~~~d~~~-lp~~d~-sFDlV~ 171 (439)
..++||=||-|.|..+..+++. .++++|+++..+..+..-+.... .....+...|... +.-..+ .||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 4558999999999999999886 38899998743333222222211 2457777777633 322334 899999
Q ss_pred ecccccccCCC----hHHHHHHHHHcCCCCeEEEEEe
Q 013605 172 CSRCLIPWGAN----DGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 172 ~~~~l~~~~~d----~~~~L~ei~RvLkPGG~liis~ 204 (439)
....- +.... ...+++.+.+.|+|||.+++..
T Consensus 156 ~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 156 VDLTD-PDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EESSS-TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCC-CCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 74422 22111 1689999999999999999865
No 212
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.12 E-value=0.0035 Score=58.23 Aligned_cols=93 Identities=17% Similarity=0.150 Sum_probs=62.8
Q ss_pred EEEEECCCCchHHHHHhh----CCcEEEeCCccchHHHHHHHHHHcCCC-eEEEEecccccCCCCCCccEEEeccccccc
Q 013605 105 TALDTGCGVASWGAYLWS----RNVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (439)
Q Consensus 105 ~VLDIGCG~G~~~~~La~----~~v~~vdis~~dis~a~i~~a~e~~~~-~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~ 179 (439)
+++|||+|.|.=+..|+= ..++-+|-...-.+ -....+.+-+++ +.+....++. +....+||+|++..+.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~-FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~--- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVA-FLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVA--- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHH-HHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSS---
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHH-HHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhc---
Confidence 799999999976655543 24777777654221 122234455666 6666666766 5567889999996533
Q ss_pred CCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 180 GANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 180 ~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
....++.-+...|++||.+++--
T Consensus 126 --~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 126 --PLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp --SHHHHHHHHGGGEEEEEEEEEEE
T ss_pred --CHHHHHHHHHHhcCCCCEEEEEc
Confidence 45788888999999999998863
No 213
>PRK00536 speE spermidine synthase; Provisional
Probab=97.09 E-value=0.0053 Score=60.10 Aligned_cols=90 Identities=10% Similarity=0.080 Sum_probs=62.5
Q ss_pred CCCCEEEEECCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHc---------CCCeEEEEecccccCCCCCCccE
Q 013605 101 GTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALER---------GVPAVIGVLGTIKMPYASRAFDM 169 (439)
Q Consensus 101 ~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~a~i~~a~e~---------~~~~~~~~~d~~~lp~~d~sFDl 169 (439)
+.+++||=||-|.|..++.++++ .|+.+||++. .++.+++. .+.+.+.. ... .-..++||+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~-----Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~--~~~~~~fDV 142 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEK-----ILDSFISFFPHFHEVKNNKNFTHAK-QLL--DLDIKKYDL 142 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHH-----HHHHHHHHCHHHHHhhcCCCEEEee-hhh--hccCCcCCE
Confidence 34569999999999999999998 4888988763 33344431 12233322 111 112368999
Q ss_pred EEecccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 170 AHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 170 V~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
|++-.. ....+.+.+.|.|+|||.++.-.
T Consensus 143 IIvDs~------~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 143 IICLQE------PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred EEEcCC------CChHHHHHHHHhcCCCcEEEECC
Confidence 998642 33678899999999999999854
No 214
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.07 E-value=0.014 Score=54.24 Aligned_cols=124 Identities=14% Similarity=0.090 Sum_probs=77.0
Q ss_pred CcchHHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcC--CCeEEEEe
Q 013605 81 FPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERG--VPAVIGVL 155 (439)
Q Consensus 81 f~~g~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~---v~~vdis~~dis~a~i~~a~e~~--~~~~~~~~ 155 (439)
..+..+...+.+.+++....-.+.++||+=+|+|.++...+.+| ++.+|.+..... ...+..+.-+ ....+...
T Consensus 22 ~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~-~l~~N~~~l~~~~~~~~~~~ 100 (187)
T COG0742 22 TRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVK-ILKENLKALGLEGEARVLRN 100 (187)
T ss_pred cCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHH-HHHHHHHHhCCccceEEEee
Confidence 34455666677778875411234599999999999999999985 778888664322 2222333334 44666666
Q ss_pred cccc-cCCCCC--CccEEEecccccccCCChHHHHHH--HHHcCCCCeEEEEEeC
Q 013605 156 GTIK-MPYASR--AFDMAHCSRCLIPWGANDGRYMIE--VDRVLRPGGYWVLSGP 205 (439)
Q Consensus 156 d~~~-lp~~d~--sFDlV~~~~~l~~~~~d~~~~L~e--i~RvLkPGG~liis~p 205 (439)
|+.. ++-... .||+|+....+..-..+....+.. -...|+|+|.+++...
T Consensus 101 da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 101 DALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred cHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 7643 222223 499999987553111111222333 4467999999999865
No 215
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.97 E-value=0.002 Score=60.91 Aligned_cols=118 Identities=10% Similarity=0.138 Sum_probs=62.1
Q ss_pred CCcchHHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHH---HHHH----cCC
Q 013605 80 QFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQ---FALE----RGV 148 (439)
Q Consensus 80 ~f~~g~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~---~a~e----~~~ 148 (439)
.+++-....+..+.+.+....+ .+.+|||||.|......+-. ...|+++.+. .+..+.. ..++ .+.
T Consensus 22 ~YGEi~~~~~~~il~~~~l~~~--dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~-~~~~a~~~~~~~~~~~~~~g~ 98 (205)
T PF08123_consen 22 TYGEISPEFVSKILDELNLTPD--DVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPE-LHDLAEELLEELKKRMKHYGK 98 (205)
T ss_dssp CGGGCHHHHHHHHHHHTT--TT---EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHH-HHHHHHHHHHHHHHHHHHCTB
T ss_pred ceeecCHHHHHHHHHHhCCCCC--CEEEECCCCCCHHHHHHHHHcCCcEEEEEEechH-HHHHHHHHHHHHHHHHHHhhc
Confidence 3555555666677777765444 49999999999876655432 3788888773 3333222 1111 122
Q ss_pred ---CeEEEEecccccCCCC---CCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEE
Q 013605 149 ---PAVIGVLGTIKMPYAS---RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVL 202 (439)
Q Consensus 149 ---~~~~~~~d~~~lp~~d---~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lii 202 (439)
++.+..+|....++.. ..-|+|+++... +.++....|.++..-||+|-.++-
T Consensus 99 ~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 99 RPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp ---EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred ccccceeeccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEEE
Confidence 2444555543322110 236999998643 443446677888888998877653
No 216
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.95 E-value=0.0021 Score=66.26 Aligned_cols=104 Identities=14% Similarity=0.020 Sum_probs=71.4
Q ss_pred CCEEEEECCCCchHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCC---CeEEEEeccc-ccC---CCCCCccEEEe
Q 013605 103 VRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGV---PAVIGVLGTI-KMP---YASRAFDMAHC 172 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~~---v~~vdis~~dis~a~i~~a~e~~~---~~~~~~~d~~-~lp---~~d~sFDlV~~ 172 (439)
+++|||+=|=||.++.+.+..| |+.+|+|...+.-+..++ .-+++ ...++++|+. -+. -....||+|+.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~-~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENA-ELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHH-HhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 4599999999999999988865 788888776554444433 33343 3578888863 232 23458999997
Q ss_pred ccccccc--------CCChHHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 173 SRCLIPW--------GANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 173 ~~~l~~~--------~~d~~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
...-..- ..+...++..+.++|+|||.+++++...
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 5322110 1122478899999999999999987533
No 217
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.94 E-value=0.00017 Score=64.39 Aligned_cols=55 Identities=18% Similarity=0.304 Sum_probs=47.8
Q ss_pred ccccCCCCCCccEEEecccccccCCCh-HHHHHHHHHcCCCCeEEEEEeCCCCccc
Q 013605 157 TIKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGPPINWKT 211 (439)
Q Consensus 157 ~~~lp~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~liis~p~~~~~~ 211 (439)
....+|.++|.|+|+|..++.|+.-+. ..+++++.|+|||||++-++.|...+..
T Consensus 38 s~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~ 93 (185)
T COG4627 38 SNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLD 93 (185)
T ss_pred hhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhH
Confidence 466789999999999999999987654 6899999999999999999998776543
No 218
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.88 E-value=0.002 Score=57.10 Aligned_cols=73 Identities=18% Similarity=0.181 Sum_probs=55.1
Q ss_pred CCEEEEECCCCchHHHHHhh---CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEecccc
Q 013605 103 VRTALDTGCGVASWGAYLWS---RNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCL 176 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~---~~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l 176 (439)
+..++|+|||.|-+.....- ..+.|+||+|.. -+...+.|.+--+.+.+.++++..+-+..+.||.++.+..+
T Consensus 49 gkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeA-LEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEA-LEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred CcchhhhcCchhhhHHHhhcCCCceEEeeecCHHH-HHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 45899999999987744332 248999998843 34455566676777888888988887778999999988744
No 219
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.87 E-value=0.0054 Score=61.16 Aligned_cols=98 Identities=11% Similarity=0.091 Sum_probs=60.4
Q ss_pred CCCEEEEECCCCchHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCCC--eEEEEecccccCCCCCCccEEEecccc
Q 013605 102 TVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKMPYASRAFDMAHCSRCL 176 (439)
Q Consensus 102 ~~~~VLDIGCG~G~~~~~La~~~---v~~vdis~~dis~a~i~~a~e~~~~--~~~~~~d~~~lp~~d~sFDlV~~~~~l 176 (439)
.++.|||+|||+|.++...+..| |.+++.|. |..- +.+..+.+.+. +.++.+.++++.+| +..|+|++-...
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqy-A~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQY-ARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHH-HHHHHhcCCccceEEEccCccccccCc-hhccEEEeccch
Confidence 35689999999999888877764 67776653 2222 22222223333 44455566776665 459999986433
Q ss_pred cccCCChHHHH---HHHHHcCCCCeEEEEEe
Q 013605 177 IPWGANDGRYM---IEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 177 ~~~~~d~~~~L---~ei~RvLkPGG~liis~ 204 (439)
.-+.. +++| -...+.|+|.|..+=+.
T Consensus 254 ~mL~N--ERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 254 YMLVN--ERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred hhhhh--HHHHHHHHHHHhhcCCCCcccCcc
Confidence 22221 3333 33569999999887553
No 220
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.83 E-value=0.0041 Score=57.79 Aligned_cols=98 Identities=21% Similarity=0.188 Sum_probs=65.2
Q ss_pred CCCEEEEECCCCchHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEecccccc
Q 013605 102 TVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (439)
Q Consensus 102 ~~~~VLDIGCG~G~~~~~La~~~---v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~ 178 (439)
.+++|||+|.|+|..+..-+..| |...|+.| ....+..-.++.+++.+.+...|... .+..||+|+.+.++..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P-~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDP-WLEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYN 154 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCCh-HHHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecC
Confidence 35699999999998777766654 88889986 44444444566677766666555433 5678999999986632
Q ss_pred cCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 179 WGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 179 ~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
.+...+++. ..+.|+..|..++.+.
T Consensus 155 -~~~a~~l~~-~~~~l~~~g~~vlvgd 179 (218)
T COG3897 155 -HTEADRLIP-WKDRLAEAGAAVLVGD 179 (218)
T ss_pred -chHHHHHHH-HHHHHHhCCCEEEEeC
Confidence 222356666 5555666665555543
No 221
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.82 E-value=0.0067 Score=63.58 Aligned_cols=115 Identities=20% Similarity=0.240 Sum_probs=79.6
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEecccccCC
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPY 162 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~a~i~~a~e~~~~-~~~~~~d~~~lp~ 162 (439)
+.+++...+.+...++. ++||+=||.|.|+..|+++ .|+++++++..+..++ +.|+..++. +.|..++++.+..
T Consensus 279 ekl~~~a~~~~~~~~~~--~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~-~NA~~n~i~N~~f~~~~ae~~~~ 355 (432)
T COG2265 279 EKLYETALEWLELAGGE--RVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQ-ENAAANGIDNVEFIAGDAEEFTP 355 (432)
T ss_pred HHHHHHHHHHHhhcCCC--EEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHH-HHHHHcCCCcEEEEeCCHHHHhh
Confidence 56666777777554444 8999999999999999976 5999999996665544 456666655 6777778766542
Q ss_pred C---CCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 163 A---SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 163 ~---d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
. ...+|.|+....--- -...+++.+. .++|-..+++|-.|.
T Consensus 356 ~~~~~~~~d~VvvDPPR~G---~~~~~lk~l~-~~~p~~IvYVSCNP~ 399 (432)
T COG2265 356 AWWEGYKPDVVVVDPPRAG---ADREVLKQLA-KLKPKRIVYVSCNPA 399 (432)
T ss_pred hccccCCCCEEEECCCCCC---CCHHHHHHHH-hcCCCcEEEEeCCHH
Confidence 2 357999998652211 1134555554 457888999987544
No 222
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.81 E-value=0.017 Score=58.42 Aligned_cols=92 Identities=17% Similarity=0.135 Sum_probs=61.4
Q ss_pred CCCCEEEEECCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEecccccc
Q 013605 101 GTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (439)
Q Consensus 101 ~~~~~VLDIGCG~G~~~~~La~~~--v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~ 178 (439)
.++.++|||||++|.|+..|+++| |+++|..+-+- .......+.....+.....-+.+.+|+|+|-.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~-------~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv--- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQ-------SLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV--- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCH-------hhhCCCCEEEEeccCcccCCCCCCCCEEEEecc---
Confidence 345699999999999999999997 77777644211 112233466666665433222678999999653
Q ss_pred cCCChHHHHHHHHHcCCCC--eEEEEEe
Q 013605 179 WGANDGRYMIEVDRVLRPG--GYWVLSG 204 (439)
Q Consensus 179 ~~~d~~~~L~ei~RvLkPG--G~liis~ 204 (439)
..+.+.++-+.+-|..| ..+|+..
T Consensus 280 --e~P~rva~lm~~Wl~~g~cr~aIfnL 305 (357)
T PRK11760 280 --EKPARVAELMAQWLVNGWCREAIFNL 305 (357)
T ss_pred --cCHHHHHHHHHHHHhcCcccEEEEEE
Confidence 36677777777777665 4556553
No 223
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.79 E-value=0.028 Score=54.84 Aligned_cols=105 Identities=15% Similarity=0.182 Sum_probs=68.7
Q ss_pred HHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC----C-cEEEeCCccchHHHHHHHHHHcCCC--eEEEEecccccCC
Q 013605 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----N-VIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKMPY 162 (439)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~----~-v~~vdis~~dis~a~i~~a~e~~~~--~~~~~~d~~~lp~ 162 (439)
..|..++...++. +|||-|.|+|+++.++++. | +...|+-. +..+.+.+.-++.++. +.+.+.|+....|
T Consensus 95 a~I~~~L~i~PGs--vV~EsGTGSGSlShaiaraV~ptGhl~tfefH~-~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 95 AMILSMLEIRPGS--VVLESGTGSGSLSHAIARAVAPTGHLYTFEFHE-TRAEKALEEFREHGIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred HHHHHHhcCCCCC--EEEecCCCcchHHHHHHHhhCcCcceEEEEecH-HHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence 4566777666666 9999999999999998886 3 67777643 2222223333344443 5667777765554
Q ss_pred C--CCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEE
Q 013605 163 A--SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (439)
Q Consensus 163 ~--d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis 203 (439)
. +..+|.|+.... .+-.++--+..+||.+|.-+++
T Consensus 172 ~~ks~~aDaVFLDlP------aPw~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 172 LIKSLKADAVFLDLP------APWEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred cccccccceEEEcCC------ChhhhhhhhHHHhhhcCceEEe
Confidence 4 678999987542 3344666667788887754444
No 224
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.76 E-value=0.016 Score=59.43 Aligned_cols=106 Identities=17% Similarity=0.208 Sum_probs=69.4
Q ss_pred CCCCEEEEECCCCchHHHHHhhC----C--cEEEeCCccchHHHHHHHHHHcCCCe-EEEEecccccC--CC-CCCccEE
Q 013605 101 GTVRTALDTGCGVASWGAYLWSR----N--VIAMSFAPRDSHEAQVQFALERGVPA-VIGVLGTIKMP--YA-SRAFDMA 170 (439)
Q Consensus 101 ~~~~~VLDIGCG~G~~~~~La~~----~--v~~vdis~~dis~a~i~~a~e~~~~~-~~~~~d~~~lp--~~-d~sFDlV 170 (439)
..+.+|||+.++.|.=+.++++. + |++.|+++. -.....+..+.-|+.. .....|...++ .. .+.||.|
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~-Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPK-RLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHH-HHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 33459999999999888887775 2 489999874 3334444555556664 55666665554 22 2359999
Q ss_pred Ee----ccccc-c------cCCCh----------HHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 171 HC----SRCLI-P------WGAND----------GRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 171 ~~----~~~l~-~------~~~d~----------~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
+. +.... + |.... ..+|..+.++|||||.++.++-..
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 94 32221 1 11111 268899999999999999997544
No 225
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.72 E-value=0.0069 Score=62.37 Aligned_cols=95 Identities=9% Similarity=0.080 Sum_probs=68.7
Q ss_pred CEEEEECCCCchHHHHHhhC--C---cEEEeCCccchHHHHHHHHHHcCCC-eEEEEeccccc-CCCCCCccEEEecccc
Q 013605 104 RTALDTGCGVASWGAYLWSR--N---VIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKM-PYASRAFDMAHCSRCL 176 (439)
Q Consensus 104 ~~VLDIGCG~G~~~~~La~~--~---v~~vdis~~dis~a~i~~a~e~~~~-~~~~~~d~~~l-p~~d~sFDlV~~~~~l 176 (439)
.+|||+-||+|..+..++.+ + |++.|+++..+. ...+.++..+.. +.+...|+..+ ......||+|.... +
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~-~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVE-SIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHH-HHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 48999999999999998875 3 899999885443 333344444443 56666776443 22235799998854 2
Q ss_pred cccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 177 IPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 177 ~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
..+..++..+.+.+++||++.++.
T Consensus 124 ----Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 ----GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ----CCcHHHHHHHHHhcccCCEEEEEe
Confidence 244679999999999999999984
No 226
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.61 E-value=0.053 Score=52.02 Aligned_cols=148 Identities=20% Similarity=0.192 Sum_probs=91.2
Q ss_pred chHHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCCCeEE-EEeccc
Q 013605 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVPAVI-GVLGTI 158 (439)
Q Consensus 83 ~g~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~---v~~vdis~~dis~a~i~~a~e~~~~~~~-~~~d~~ 158 (439)
.|+.++...+.. +.+. .+++++||||+.||.|+.-++++| |.++|+.-..++.. ......+.. ...++.
T Consensus 62 RG~~KL~~ale~-F~l~-~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k-----LR~d~rV~~~E~tN~r 134 (245)
T COG1189 62 RGGLKLEKALEE-FELD-VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK-----LRNDPRVIVLERTNVR 134 (245)
T ss_pred cHHHHHHHHHHh-cCcC-CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHh-----HhcCCcEEEEecCChh
Confidence 555555544443 3332 345699999999999999999985 88898865433322 222233332 223333
Q ss_pred ccC---CCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEe-CCCCcccc---ccccCCChHHHHHHHHHHH
Q 013605 159 KMP---YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG-PPINWKTN---YKAWQRPKEELQEEQRKIE 231 (439)
Q Consensus 159 ~lp---~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~-p~~~~~~~---~~~~~~~~e~l~~~~~~l~ 231 (439)
.+. +. +..|+|+|.-+++. ...+|-.+..+++|+|.++.-. |....... -++..+..+........+.
T Consensus 135 ~l~~~~~~-~~~d~~v~DvSFIS----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~ 209 (245)
T COG1189 135 YLTPEDFT-EKPDLIVIDVSFIS----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIE 209 (245)
T ss_pred hCCHHHcc-cCCCeEEEEeehhh----HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHH
Confidence 332 22 36889999776633 3678999999999999888865 32211111 2233444444455566677
Q ss_pred HHHHhcceeee
Q 013605 232 EIANLLCWEKK 242 (439)
Q Consensus 232 ~l~~~l~W~~~ 242 (439)
..+....|...
T Consensus 210 ~~~~~~g~~~~ 220 (245)
T COG1189 210 NFAKELGFQVK 220 (245)
T ss_pred HHHhhcCcEEe
Confidence 77777777764
No 227
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.60 E-value=0.023 Score=54.07 Aligned_cols=112 Identities=17% Similarity=0.171 Sum_probs=70.7
Q ss_pred HHHHHHHHhhcC-CCCCCCCEEEEECCCCchHHHHHhhC----C-cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc
Q 013605 86 DKYIDQLASVIP-IKNGTVRTALDTGCGVASWGAYLWSR----N-VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK 159 (439)
Q Consensus 86 ~~~i~~l~~~l~-~~~~~~~~VLDIGCG~G~~~~~La~~----~-v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~ 159 (439)
.++...|..-+. ..-..+.+||-+|..+|+...++.+- | |.++++|+. .-...+..|++|. ++.-+..|+.
T Consensus 56 SKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r-~~rdL~~la~~R~-NIiPIl~DAr- 132 (229)
T PF01269_consen 56 SKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPR-SMRDLLNLAKKRP-NIIPILEDAR- 132 (229)
T ss_dssp -HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHH-HHHHHHHHHHHST-TEEEEES-TT-
T ss_pred hHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecch-hHHHHHHHhccCC-ceeeeeccCC-
Confidence 444444444432 22233459999999999988888764 4 889999995 3455667777773 4444555653
Q ss_pred cC----CCCCCccEEEecccccccCCCh-HHHHHHHHHcCCCCeEEEEEe
Q 013605 160 MP----YASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 160 lp----~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~liis~ 204 (439)
.| .--+.+|+|++.-. - ++. ..++.++...||+||.++++.
T Consensus 133 ~P~~Y~~lv~~VDvI~~DVa---Q-p~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 133 HPEKYRMLVEMVDVIFQDVA---Q-PDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp SGGGGTTTS--EEEEEEE-S---S-TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ChHHhhcccccccEEEecCC---C-hHHHHHHHHHHHhhccCCcEEEEEE
Confidence 22 11347999998542 2 233 678888889999999999974
No 228
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.60 E-value=0.0035 Score=62.40 Aligned_cols=83 Identities=14% Similarity=0.085 Sum_probs=55.0
Q ss_pred HHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccC-
Q 013605 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP- 161 (439)
Q Consensus 88 ~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp- 161 (439)
+++++.+.+...++ .++||.+||.|..+..+++. .|+++|.++.++..+...... ...+.+...+...+.
T Consensus 7 ll~Evl~~L~~~pg--~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~ 82 (296)
T PRK00050 7 LLDEVVDALAIKPD--GIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKE 82 (296)
T ss_pred cHHHHHHhhCCCCC--CEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHH
Confidence 45566666654433 48999999999999999886 288899988655544432221 234667777765442
Q ss_pred -CCC--CCccEEEecc
Q 013605 162 -YAS--RAFDMAHCSR 174 (439)
Q Consensus 162 -~~d--~sFDlV~~~~ 174 (439)
.++ .+||.|++..
T Consensus 83 ~l~~~~~~vDgIl~DL 98 (296)
T PRK00050 83 VLAEGLGKVDGILLDL 98 (296)
T ss_pred HHHcCCCccCEEEECC
Confidence 112 2799999754
No 229
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.47 E-value=0.022 Score=63.49 Aligned_cols=117 Identities=11% Similarity=-0.040 Sum_probs=70.5
Q ss_pred HHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC-------------------------------------------
Q 013605 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR------------------------------------------- 123 (439)
Q Consensus 87 ~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~------------------------------------------- 123 (439)
.+...|..+.... ..+..++|.+||+|++....+..
T Consensus 176 tlAaa~l~~a~w~-~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~ 254 (702)
T PRK11783 176 NLAAAILLRSGWP-QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAE 254 (702)
T ss_pred HHHHHHHHHcCCC-CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence 3444454444331 22358999999999998665320
Q ss_pred ---CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEecccccCCC--CCCccEEEecccccccCCCh---HHHHHH---H
Q 013605 124 ---NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKMPYA--SRAFDMAHCSRCLIPWGAND---GRYMIE---V 190 (439)
Q Consensus 124 ---~v~~vdis~~dis~a~i~~a~e~~~~--~~~~~~d~~~lp~~--d~sFDlV~~~~~l~~~~~d~---~~~L~e---i 190 (439)
.++++|+++..+..+.. .+...++. +.+..+|+..++.+ .++||+|+++..+-.-..+. ..+..+ .
T Consensus 255 ~~~~i~G~Did~~av~~A~~-N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~ 333 (702)
T PRK11783 255 LPSKFYGSDIDPRVIQAARK-NARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRR 333 (702)
T ss_pred cCceEEEEECCHHHHHHHHH-HHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHH
Confidence 26788888865554443 44455654 56778888777644 35899999997543222211 233333 3
Q ss_pred HHcCCCCeEEEEEeC
Q 013605 191 DRVLRPGGYWVLSGP 205 (439)
Q Consensus 191 ~RvLkPGG~liis~p 205 (439)
.+...+|+.+++.++
T Consensus 334 lk~~~~g~~~~llt~ 348 (702)
T PRK11783 334 LKQQFGGWNAALFSS 348 (702)
T ss_pred HHHhCCCCeEEEEeC
Confidence 444458988877554
No 230
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.41 E-value=0.03 Score=57.36 Aligned_cols=115 Identities=13% Similarity=0.098 Sum_probs=78.6
Q ss_pred HHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhCC-------------------------------------------
Q 013605 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN------------------------------------------- 124 (439)
Q Consensus 88 ~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~------------------------------------------- 124 (439)
+...|..+-...++ ..++|-=||+|++....+-.+
T Consensus 179 LAaAil~lagw~~~--~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~ 256 (381)
T COG0116 179 LAAAILLLAGWKPD--EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI 256 (381)
T ss_pred HHHHHHHHcCCCCC--CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence 33445555444333 489999999999987655432
Q ss_pred cEEEeCCccchHHHHHHHHHHcCCC--eEEEEecccccCCCCCCccEEEeccccc-ccCCC--h----HHHHHHHHHcCC
Q 013605 125 VIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKMPYASRAFDMAHCSRCLI-PWGAN--D----GRYMIEVDRVLR 195 (439)
Q Consensus 125 v~~vdis~~dis~a~i~~a~e~~~~--~~~~~~d~~~lp~~d~sFDlV~~~~~l~-~~~~d--~----~~~L~ei~RvLk 195 (439)
+.++|+++.++..|. ..|+..|+. +.|.++|+..++-+-+++|+|+|+...- -+... . ..+.+.+.+.++
T Consensus 257 ~~G~Did~r~i~~Ak-~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~ 335 (381)
T COG0116 257 IYGSDIDPRHIEGAK-ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLA 335 (381)
T ss_pred EEEecCCHHHHHHHH-HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhc
Confidence 569999997665444 477777876 7788899888875447899999986331 11111 1 245566778888
Q ss_pred CCeEEEEEeC
Q 013605 196 PGGYWVLSGP 205 (439)
Q Consensus 196 PGG~liis~p 205 (439)
--+.++++++
T Consensus 336 ~ws~~v~tt~ 345 (381)
T COG0116 336 GWSRYVFTTS 345 (381)
T ss_pred CCceEEEEcc
Confidence 8889998875
No 231
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.37 E-value=0.02 Score=58.06 Aligned_cols=116 Identities=14% Similarity=0.053 Sum_probs=83.2
Q ss_pred CCcchHHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCCC--eEEEE
Q 013605 80 QFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVP--AVIGV 154 (439)
Q Consensus 80 ~f~~g~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~---v~~vdis~~dis~a~i~~a~e~~~~--~~~~~ 154 (439)
+|..+-..--..++++.. . +.+|||+=+|.|.|+..++..+ |.++|++|..+ +-..+.++.++.. +....
T Consensus 170 ~Fsprl~~ER~Rva~~v~--~--GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~-~~L~eNi~LN~v~~~v~~i~ 244 (341)
T COG2520 170 YFSPRLSTERARVAELVK--E--GETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAV-EYLKENIRLNKVEGRVEPIL 244 (341)
T ss_pred EECCCchHHHHHHHhhhc--C--CCEEEEccCCcccchhhhhhcCCceEEEEecCHHHH-HHHHHHHHhcCccceeeEEe
Confidence 455555444456666663 2 4499999999999999998873 88999999544 3444455555554 44678
Q ss_pred ecccccCCCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 155 LGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 155 ~d~~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
+|........+.||-|++... .....++..+.+.+++||.+.+-..
T Consensus 245 gD~rev~~~~~~aDrIim~~p-----~~a~~fl~~A~~~~k~~g~iHyy~~ 290 (341)
T COG2520 245 GDAREVAPELGVADRIIMGLP-----KSAHEFLPLALELLKDGGIIHYYEF 290 (341)
T ss_pred ccHHHhhhccccCCEEEeCCC-----CcchhhHHHHHHHhhcCcEEEEEec
Confidence 888777766588999999752 2346788899999999999988653
No 232
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.37 E-value=0.01 Score=58.79 Aligned_cols=103 Identities=14% Similarity=0.121 Sum_probs=64.4
Q ss_pred CCEEEEECCCCchHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCC---CeEEEEecccc-cC--CCCCCccEEEec
Q 013605 103 VRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGV---PAVIGVLGTIK-MP--YASRAFDMAHCS 173 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~~---v~~vdis~~dis~a~i~~a~e~~~---~~~~~~~d~~~-lp--~~d~sFDlV~~~ 173 (439)
+++|||+=|=||.|+.+.+..| |+.+|.|...+..+..+++. ++. ...+...|+.. +. -..+.||+|++.
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~l-Ng~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAAL-NGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHH-TT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 3499999999999999888775 78888877666555544433 333 35677777632 22 124689999985
Q ss_pred ccccc-----cCCChHHHHHHHHHcCCCCeEEEEEeCC
Q 013605 174 RCLIP-----WGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (439)
Q Consensus 174 ~~l~~-----~~~d~~~~L~ei~RvLkPGG~liis~p~ 206 (439)
..... ...+...++..+.++|+|||.+++++..
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 42211 1112256788899999999999887653
No 233
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.17 E-value=0.012 Score=60.22 Aligned_cols=110 Identities=16% Similarity=0.162 Sum_probs=62.4
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEecccccC-
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMP- 161 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~a~i~~a~e~~~~-~~~~~~d~~~lp- 161 (439)
+.+++.+.+++...++ +|||+=||+|.++..|++. .|+|+++++..+..|. +.|+.+++. +.+..++++++.
T Consensus 183 ~~l~~~~~~~l~~~~~---~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~-~Na~~N~i~n~~f~~~~~~~~~~ 258 (352)
T PF05958_consen 183 EKLYEQALEWLDLSKG---DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDAR-ENAKLNGIDNVEFIRGDAEDFAK 258 (352)
T ss_dssp HHHHHHHHHHCTT-TT---EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHH-HHHHHTT--SEEEEE--SHHCCC
T ss_pred HHHHHHHHHHhhcCCC---cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHH-HHHHHcCCCcceEEEeeccchhH
Confidence 6667777777754322 7999999999999999997 4999999886554444 455555654 566665543321
Q ss_pred ---------------CCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 162 ---------------YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 162 ---------------~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
.....+|+|+....-.-.. ..++..+.+ +.=.+++|..
T Consensus 259 ~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~---~~~~~~~~~---~~~ivYvSCn 311 (352)
T PF05958_consen 259 ALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLD---EKVIELIKK---LKRIVYVSCN 311 (352)
T ss_dssp HHCCS-GGTTGGGS-GGCTTESEEEE---TT-SC---HHHHHHHHH---SSEEEEEES-
T ss_pred HHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch---HHHHHHHhc---CCeEEEEECC
Confidence 1233689887754221111 344444433 3456666654
No 234
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.13 E-value=0.029 Score=55.69 Aligned_cols=157 Identities=17% Similarity=0.226 Sum_probs=89.7
Q ss_pred HHHHHHHHHhhcCCCC--CCCCEEEEECCCCchHHHHHhhCCcE--EEeCCccchHHHHHHHHHH----cC---------
Q 013605 85 ADKYIDQLASVIPIKN--GTVRTALDTGCGVASWGAYLWSRNVI--AMSFAPRDSHEAQVQFALE----RG--------- 147 (439)
Q Consensus 85 ~~~~i~~l~~~l~~~~--~~~~~VLDIGCG~G~~~~~La~~~v~--~vdis~~dis~a~i~~a~e----~~--------- 147 (439)
...++++|..+.+... ....+||--|||.|+++..|+..|.. +=++|--|+--. .++.. .+
T Consensus 131 ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S--~FiLN~~~~~nq~~IYPfIh 208 (369)
T KOG2798|consen 131 YKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICS--SFILNYCKQENQFTIYPFIH 208 (369)
T ss_pred hhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHH--HHHHHhhccCCcEEEEeeee
Confidence 3567778887775432 23457999999999999999988643 223322222111 12221 00
Q ss_pred ---------------------------CCeEE--EEecccc-c--CCCCCCccEEEecccccccCCChHHHHHHHHHcCC
Q 013605 148 ---------------------------VPAVI--GVLGTIK-M--PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLR 195 (439)
Q Consensus 148 ---------------------------~~~~~--~~~d~~~-l--p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLk 195 (439)
....+ ..+|..+ . +-..++||+|+..+ ++.-..+.-.++..|..+||
T Consensus 209 ~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcf-FIDTa~NileYi~tI~~iLk 287 (369)
T KOG2798|consen 209 QYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCF-FIDTAHNILEYIDTIYKILK 287 (369)
T ss_pred ccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEE-EeechHHHHHHHHHHHHhcc
Confidence 00001 1112111 1 11234699998765 44444455789999999999
Q ss_pred CCeEEEEEeCCCCccccccccCCChHHHHHHHHHHHHHHHhcceeeeccc
Q 013605 196 PGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEK 245 (439)
Q Consensus 196 PGG~liis~p~~~~~~~~~~~~~~~e~l~~~~~~l~~l~~~l~W~~~~~~ 245 (439)
|||+++=.+|-..+.....+. ...-.++-..+.+..++..+.|+.+.++
T Consensus 288 ~GGvWiNlGPLlYHF~d~~g~-~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 288 PGGVWINLGPLLYHFEDTHGV-ENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CCcEEEeccceeeeccCCCCC-cccccccccHHHHHHHHHhcCcEEEEee
Confidence 999999777643222211111 1122334455677888888899888765
No 235
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.09 E-value=0.026 Score=53.29 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=68.9
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCC---CeEEEEecc--
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGV---PAVIGVLGT-- 157 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~---v~~vdis~~dis~a~i~~a~e~~~---~~~~~~~d~-- 157 (439)
..+.+.+++.+. .++++||.||-|-|.....+.++. -..++..| ++ .+..++.+. +.++.....
T Consensus 88 tpiMha~A~ai~---tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp-~V----~krmr~~gw~ek~nViil~g~We 159 (271)
T KOG1709|consen 88 TPIMHALAEAIS---TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHP-DV----LKRMRDWGWREKENVIILEGRWE 159 (271)
T ss_pred hHHHHHHHHHHh---hCCceEEEeccchHHHHHHHhhcCCcceEEEecCH-HH----HHHHHhcccccccceEEEecchH
Confidence 445556666654 345589999999999888887763 34555554 33 333333322 222322222
Q ss_pred cccC-CCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEE
Q 013605 158 IKMP-YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (439)
Q Consensus 158 ~~lp-~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis 203 (439)
..++ ++|+.||-|+-.. +....+|...+.+.+.|+|||+|+|-+-
T Consensus 160 Dvl~~L~d~~FDGI~yDT-y~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 160 DVLNTLPDKHFDGIYYDT-YSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hhhccccccCcceeEeec-hhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 1222 6688999998654 3233346678889999999999999775
No 236
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.05 E-value=0.056 Score=47.69 Aligned_cols=96 Identities=17% Similarity=0.075 Sum_probs=54.8
Q ss_pred CCCCEEEEECCCCchHHHHHhh-----C---CcEEEeCCccchHHHHHHHHHHcCC----CeEEEEecccccCCCCCCcc
Q 013605 101 GTVRTALDTGCGVASWGAYLWS-----R---NVIAMSFAPRDSHEAQVQFALERGV----PAVIGVLGTIKMPYASRAFD 168 (439)
Q Consensus 101 ~~~~~VLDIGCG~G~~~~~La~-----~---~v~~vdis~~dis~a~i~~a~e~~~----~~~~~~~d~~~lp~~d~sFD 168 (439)
....+|+|+|||.|+++..|+. . .|+++|.++... +...+.+++.+. ...+...+..... .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLV-ESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHH-HHHHHHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 3456899999999999999988 3 488888877433 333334444331 1222333222221 144456
Q ss_pred EEEecccccccCCCh-HHHHHHHHHcCCCCeEEEEEeC
Q 013605 169 MAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 169 lV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~liis~p 205 (439)
+++. + |...+. ..+++-+.+ ++-.+++..|
T Consensus 102 ~~vg---L-HaCG~Ls~~~l~~~~~---~~~~~l~~vp 132 (141)
T PF13679_consen 102 ILVG---L-HACGDLSDRALRLFIR---PNARFLVLVP 132 (141)
T ss_pred EEEE---e-ecccchHHHHHHHHHH---cCCCEEEEcC
Confidence 6654 2 455555 555555555 5555555443
No 237
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.04 E-value=0.05 Score=51.72 Aligned_cols=94 Identities=16% Similarity=0.123 Sum_probs=62.0
Q ss_pred CCEEEEECCCCchHHHHHhh----CCcEEEeCCccchHHHHH-HHHHHcCCC-eEEEEecccccCCCCCCccEEEecccc
Q 013605 103 VRTALDTGCGVASWGAYLWS----RNVIAMSFAPRDSHEAQV-QFALERGVP-AVIGVLGTIKMPYASRAFDMAHCSRCL 176 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~----~~v~~vdis~~dis~a~i-~~a~e~~~~-~~~~~~d~~~lp~~d~sFDlV~~~~~l 176 (439)
..+++|||+|.|.=+.-|+- .+++-+|-...-+ +.. +.+.+-+++ +.+..+-++.+.-...-||+|.|..+.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~--~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKI--AFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHH--HHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc
Confidence 45999999999987776652 2566666654322 122 233455666 677777777765322129999986533
Q ss_pred cccCCChHHHHHHHHHcCCCCeEEEEE
Q 013605 177 IPWGANDGRYMIEVDRVLRPGGYWVLS 203 (439)
Q Consensus 177 ~~~~~d~~~~L~ei~RvLkPGG~liis 203 (439)
+...++.-+...+|+||.++..
T Consensus 146 -----~L~~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 146 -----SLNVLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred -----chHHHHHHHHHhcccCCcchhh
Confidence 4466777788999999987643
No 238
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=95.95 E-value=0.016 Score=56.76 Aligned_cols=101 Identities=14% Similarity=0.085 Sum_probs=66.8
Q ss_pred HHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHH---cCCCeEEEEecccc
Q 013605 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALE---RGVPAVIGVLGTIK 159 (439)
Q Consensus 85 ~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~a~i~~a~e---~~~~~~~~~~d~~~ 159 (439)
...+++.|.+.+.... +..|||||.|.|.++..|++. .++++++++. ..+..++ ......+..+|+..
T Consensus 15 ~~~~~~~Iv~~~~~~~--~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~-----~~~~L~~~~~~~~~~~vi~~D~l~ 87 (262)
T PF00398_consen 15 DPNIADKIVDALDLSE--GDTVLEIGPGPGALTRELLKRGKRVIAVEIDPD-----LAKHLKERFASNPNVEVINGDFLK 87 (262)
T ss_dssp HHHHHHHHHHHHTCGT--TSEEEEESSTTSCCHHHHHHHSSEEEEEESSHH-----HHHHHHHHCTTCSSEEEEES-TTT
T ss_pred CHHHHHHHHHhcCCCC--CCEEEEeCCCCccchhhHhcccCcceeecCcHh-----HHHHHHHHhhhcccceeeecchhc
Confidence 4667788888886553 448999999999999999987 4899999763 2333333 23457888888877
Q ss_pred cCCCC---CCccEEEecccccccCCChHHHHHHHHHcCCC
Q 013605 160 MPYAS---RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRP 196 (439)
Q Consensus 160 lp~~d---~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkP 196 (439)
+.... ..-..|+++..+ . -...++..+...-+.
T Consensus 88 ~~~~~~~~~~~~~vv~NlPy-~---is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 88 WDLYDLLKNQPLLVVGNLPY-N---ISSPILRKLLELYRF 123 (262)
T ss_dssp SCGGGHCSSSEEEEEEEETG-T---GHHHHHHHHHHHGGG
T ss_pred cccHHhhcCCceEEEEEecc-c---chHHHHHHHhhcccc
Confidence 66544 445667776432 1 225566666664444
No 239
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.55 E-value=0.12 Score=51.01 Aligned_cols=101 Identities=10% Similarity=0.151 Sum_probs=56.5
Q ss_pred CCEEEEECCCCchHHHHHhhC----C--cEEEeCCccchHHHHHHHHH---HcCCCeEEEEecccccCCCCCCccEEEec
Q 013605 103 VRTALDTGCGVASWGAYLWSR----N--VIAMSFAPRDSHEAQVQFAL---ERGVPAVIGVLGTIKMPYASRAFDMAHCS 173 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~----~--v~~vdis~~dis~a~i~~a~---e~~~~~~~~~~d~~~lp~~d~sFDlV~~~ 173 (439)
+++|+=||||.=-++..++.. + ++++|+++.....+. +... ..+....+..+|....+..-..||+|+.+
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~-~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELAR-RLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHH-HHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHH-HHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 459999999988777665542 2 678899875443332 2222 22445678878877666555789999976
Q ss_pred ccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 174 RCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 174 ~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
...-.-.++...++..+.+.++||..+++-.
T Consensus 200 alVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 200 ALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 5331122245899999999999999999864
No 240
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.40 E-value=0.041 Score=55.42 Aligned_cols=104 Identities=15% Similarity=0.148 Sum_probs=58.1
Q ss_pred CCEEEEECCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCe-EEEEec--ccccCCC-CCCccEEEec
Q 013605 103 VRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPA-VIGVLG--TIKMPYA-SRAFDMAHCS 173 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~a~i~~a~e~~~~~-~~~~~d--~~~lp~~-d~sFDlV~~~ 173 (439)
..+|||+|.|.|.-+.++-+- .++.++.++ .+.+..-..+...+... ..-..+ .++++++ ...|++|+..
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp-~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASP-ALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCH-HHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence 457999999999766554432 355555555 33333333333222111 000111 2345544 3457777765
Q ss_pred ccccccCCC-h-HHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 174 RCLIPWGAN-D-GRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 174 ~~l~~~~~d-~-~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
.-+.+-... + ...++.+..++.|||.++|..+..
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 433332211 1 458889999999999999987644
No 241
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=95.39 E-value=0.044 Score=49.89 Aligned_cols=69 Identities=25% Similarity=0.195 Sum_probs=42.5
Q ss_pred EEEEECCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccc-C-CCCCC-ccEEEecc
Q 013605 105 TALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKM-P-YASRA-FDMAHCSR 174 (439)
Q Consensus 105 ~VLDIGCG~G~~~~~La~~~--v~~vdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~l-p-~~d~s-FDlV~~~~ 174 (439)
+|+|+.||.|..+.+++... |+++|+++.-+.- ....|+-.|+ .+.+..+|...+ + +.... ||+|+++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~-a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLEC-AKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHH-HHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHH-HHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 79999999999999999984 9999998854432 3335555565 367888886433 2 22222 89999865
No 242
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=95.24 E-value=0.071 Score=54.14 Aligned_cols=80 Identities=19% Similarity=0.179 Sum_probs=42.0
Q ss_pred CCCCCEEEEECCCCchHHHHHhhC--------------------CcEEEeCCccchHHHHHHHHHH-----cCCCeEE-E
Q 013605 100 NGTVRTALDTGCGVASWGAYLWSR--------------------NVIAMSFAPRDSHEAQVQFALE-----RGVPAVI-G 153 (439)
Q Consensus 100 ~~~~~~VLDIGCG~G~~~~~La~~--------------------~v~~vdis~~dis~a~i~~a~e-----~~~~~~~-~ 153 (439)
.+..-+|+|+||..|..+..+... .|.--|+-.+|...-....... ...+... .
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 344568999999999877665442 1455677777776554333222 1122222 2
Q ss_pred Eec-ccccCCCCCCccEEEecccccccC
Q 013605 154 VLG-TIKMPYASRAFDMAHCSRCLIPWG 180 (439)
Q Consensus 154 ~~d-~~~lp~~d~sFDlV~~~~~l~~~~ 180 (439)
+.. ...--||++|.|+++++.++ ||.
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~al-HWL 120 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYAL-HWL 120 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-T-TB-
T ss_pred cCchhhhccCCCCceEEEEEechh-hhc
Confidence 222 23333789999999999988 554
No 243
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.20 E-value=0.013 Score=52.86 Aligned_cols=102 Identities=16% Similarity=0.219 Sum_probs=60.9
Q ss_pred CCEEEEECCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEe-----c--ccccCCCCCCccEE
Q 013605 103 VRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVL-----G--TIKMPYASRAFDMA 170 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~-----d--~~~lp~~d~sFDlV 170 (439)
+++||++|.|--.++..|... .|..+|=. +.+...++..........+... + ..........||.|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgn--e~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiI 107 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGN--EESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDII 107 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCC--HHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEE
Confidence 458999999976666555543 24444432 3333333333332210111111 1 11222345689999
Q ss_pred EecccccccCCChHHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 171 HCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 171 ~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
+|+.|+ .+.+....+++.|.+.|+|.|..++..|..
T Consensus 108 laADCl-FfdE~h~sLvdtIk~lL~p~g~Al~fsPRR 143 (201)
T KOG3201|consen 108 LAADCL-FFDEHHESLVDTIKSLLRPSGRALLFSPRR 143 (201)
T ss_pred Eeccch-hHHHHHHHHHHHHHHHhCcccceeEecCcc
Confidence 999998 444334788999999999999999888743
No 244
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=95.16 E-value=0.026 Score=59.44 Aligned_cols=73 Identities=22% Similarity=0.275 Sum_probs=53.7
Q ss_pred hHHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEecccc
Q 013605 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIK 159 (439)
Q Consensus 84 g~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~a~i~~a~e~~~~-~~~~~~d~~~ 159 (439)
.++.+...+.+.+.+..+ ..+||+-||||.++..+++. .|+++++++.++..|.. .|...|+. +.|+++.+++
T Consensus 367 ~aevLys~i~e~~~l~~~--k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~-nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 367 AAEVLYSTIGEWAGLPAD--KTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEK-NAQINGISNATFIVGQAED 442 (534)
T ss_pred HHHHHHHHHHHHhCCCCC--cEEEEEeecCCceehhhhccccceeeeecChhhcchhhh-cchhcCccceeeeecchhh
Confidence 345566677777766555 48999999999999999987 59999999966655544 56666664 6777775543
No 245
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=95.10 E-value=0.06 Score=53.40 Aligned_cols=103 Identities=20% Similarity=0.167 Sum_probs=66.1
Q ss_pred CCCEEEEECCCCchHHHHHhhC----C-cEEEeCCccchHHHHHHHHHHcCCCeEE-EEeccccc-C-CCCCCccEEEe-
Q 013605 102 TVRTALDTGCGVASWGAYLWSR----N-VIAMSFAPRDSHEAQVQFALERGVPAVI-GVLGTIKM-P-YASRAFDMAHC- 172 (439)
Q Consensus 102 ~~~~VLDIGCG~G~~~~~La~~----~-v~~vdis~~dis~a~i~~a~e~~~~~~~-~~~d~~~l-p-~~d~sFDlV~~- 172 (439)
.+.+|||++++.|.=+.++++. + +++.|+++.-+. ...+.++..|..... ...|.... + .....||.|+.
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~-~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLK-RLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHH-HHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHH-HHHHHHHhcCCceEEEEeeccccccccccccccchhhcC
Confidence 3448999999999888777764 3 899999874332 333344555665443 43565443 2 22346999994
Q ss_pred ---cccccccCCCh------------------HHHHHHHHHcC----CCCeEEEEEeCC
Q 013605 173 ---SRCLIPWGAND------------------GRYMIEVDRVL----RPGGYWVLSGPP 206 (439)
Q Consensus 173 ---~~~l~~~~~d~------------------~~~L~ei~RvL----kPGG~liis~p~ 206 (439)
+... .+..++ ..+|..+.+.+ ||||+++.++-.
T Consensus 164 aPCSg~G-~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 164 APCSGLG-TIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp CSCCCGG-GTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred CCccchh-hhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 3321 111111 26789999999 999999998753
No 246
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.98 E-value=0.077 Score=54.76 Aligned_cols=104 Identities=15% Similarity=0.174 Sum_probs=61.5
Q ss_pred CCEEEEECCCCchHHHHHhhC-------------------CcEEEeCCccchHHHHHHHHHH-------------cCCCe
Q 013605 103 VRTALDTGCGVASWGAYLWSR-------------------NVIAMSFAPRDSHEAQVQFALE-------------RGVPA 150 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~-------------------~v~~vdis~~dis~a~i~~a~e-------------~~~~~ 150 (439)
..+|+|+|||+|..+..+... .+.--|+-.+|........... .+...
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 458999999999776554321 1334566666765544433210 11111
Q ss_pred EEEEe---cccccCCCCCCccEEEecccccccCCCh--------------------------------------HHHHHH
Q 013605 151 VIGVL---GTIKMPYASRAFDMAHCSRCLIPWGAND--------------------------------------GRYMIE 189 (439)
Q Consensus 151 ~~~~~---d~~~lp~~d~sFDlV~~~~~l~~~~~d~--------------------------------------~~~L~e 189 (439)
.+..+ ....--||++|.++++++.++ ||.... ..+|+-
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~sl-HWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSL-HWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccc-eecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 122233889999999999988 675421 123334
Q ss_pred HHHcCCCCeEEEEEeCCC
Q 013605 190 VDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 190 i~RvLkPGG~liis~p~~ 207 (439)
=.+-|.|||.++++....
T Consensus 223 Ra~ELvpGG~mvl~~~Gr 240 (386)
T PLN02668 223 RAQEMKRGGAMFLVCLGR 240 (386)
T ss_pred HHHHhccCcEEEEEEecC
Confidence 455689999999986544
No 247
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=94.96 E-value=0.069 Score=49.77 Aligned_cols=100 Identities=12% Similarity=0.079 Sum_probs=54.6
Q ss_pred CCEEEEECCCCchHHHHHhhC----CcEEEeCCccchH-------HHHHHHHHHcCCC-eEEEEecccccC-------CC
Q 013605 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSH-------EAQVQFALERGVP-AVIGVLGTIKMP-------YA 163 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis-------~a~i~~a~e~~~~-~~~~~~d~~~lp-------~~ 163 (439)
+.+|+|+=-|.|.|++.+... | .+..+.|.+.. ......+++.... ....-...-.++ .+
T Consensus 49 g~tVid~~PGgGy~TrI~s~~vgp~G-~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~~~ 127 (238)
T COG4798 49 GATVIDLIPGGGYFTRIFSPAVGPKG-KVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDLVP 127 (238)
T ss_pred CCEEEEEecCCccHhhhhchhcCCce-eEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccccc
Confidence 449999999999999988875 4 34445444331 1111122222111 111111111222 12
Q ss_pred CCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 164 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
..++|.++....+ | ......+..++.+.|||||++.+.++
T Consensus 128 ~~~~yhdmh~k~i-~-~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 128 TAQNYHDMHNKNI-H-PATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred cchhhhhhhcccc-C-cchHHHHHHHHHHhcCCCcEEEEEec
Confidence 3344444433322 2 22337889999999999999999865
No 248
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=94.77 E-value=0.031 Score=51.74 Aligned_cols=91 Identities=19% Similarity=0.112 Sum_probs=62.9
Q ss_pred EEEEECCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHc-----CCCeEEEEecccccCCCCCCccEEEeccccc
Q 013605 105 TALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALER-----GVPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (439)
Q Consensus 105 ~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~a~i~~a~e~-----~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~ 177 (439)
++.|+|+|+|-++...+.. .|++++.+|.- ...|.++ ..+..+.++|+....| ...|+|+|-..=.
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~-----a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDT 107 (252)
T COG4076 35 TFADLGAGSGILSVVAAHAAERVIAIEKDPKR-----ARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDT 107 (252)
T ss_pred ceeeccCCcchHHHHHHhhhceEEEEecCcHH-----HHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhH
Confidence 7999999999887766654 69999998742 2234443 2235677888877777 4579999854222
Q ss_pred ccCCCh-HHHHHHHHHcCCCCeEEEE
Q 013605 178 PWGAND-GRYMIEVDRVLRPGGYWVL 202 (439)
Q Consensus 178 ~~~~d~-~~~L~ei~RvLkPGG~lii 202 (439)
.+.+++ ...+..+...||-.|.++=
T Consensus 108 aLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 108 ALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HhhcccccHHHHHHHHHhhcCCcccc
Confidence 233333 5778888889999888763
No 249
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=94.62 E-value=0.0099 Score=49.42 Aligned_cols=93 Identities=16% Similarity=0.110 Sum_probs=38.5
Q ss_pred EEECCCCchHHHHHhhC-------CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccc-cC-CCCCCccEEEeccc
Q 013605 107 LDTGCGVASWGAYLWSR-------NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIK-MP-YASRAFDMAHCSRC 175 (439)
Q Consensus 107 LDIGCG~G~~~~~La~~-------~v~~vdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~-lp-~~d~sFDlV~~~~~ 175 (439)
||||+..|..+..+++. .+.++|..+. .+...+..++.+. .+.+..++... ++ +++++||+|+.-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~--~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg- 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG--DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG- 77 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc--ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-
Confidence 68999999888887763 3788888663 1122223332222 36677777532 22 3367899999854
Q ss_pred ccccCCChHHHHHHHHHcCCCCeEEEEE
Q 013605 176 LIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (439)
Q Consensus 176 l~~~~~d~~~~L~ei~RvLkPGG~liis 203 (439)
- |-.+.....+..+.+.|+|||++++-
T Consensus 78 ~-H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 78 D-HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred C-CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 2 32223367788899999999999875
No 250
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=94.61 E-value=0.091 Score=52.39 Aligned_cols=97 Identities=15% Similarity=0.213 Sum_probs=49.9
Q ss_pred chHHHHHHHHHhhcCCCCC---CCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC--eEEE
Q 013605 83 QGADKYIDQLASVIPIKNG---TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP--AVIG 153 (439)
Q Consensus 83 ~g~~~~i~~l~~~l~~~~~---~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~--~~~~ 153 (439)
++.-.|+..|.+++..... ...++||||+|....-..|..+ .++|+||++..+..|+....+...+. +.+.
T Consensus 80 P~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~ 159 (299)
T PF05971_consen 80 PNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELR 159 (299)
T ss_dssp HHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEE
T ss_pred chhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEE
Confidence 3456788888888864332 2458999999988654444433 58999998876666655444442443 3333
Q ss_pred Eecc-----cccCCCCCCccEEEeccccccc
Q 013605 154 VLGT-----IKMPYASRAFDMAHCSRCLIPW 179 (439)
Q Consensus 154 ~~d~-----~~lp~~d~sFDlV~~~~~l~~~ 179 (439)
.... ..+-.++..||+.+|+..++.-
T Consensus 160 ~~~~~~~i~~~i~~~~e~~dftmCNPPFy~s 190 (299)
T PF05971_consen 160 KQKNPDNIFDGIIQPNERFDFTMCNPPFYSS 190 (299)
T ss_dssp E--ST-SSTTTSTT--S-EEEEEE-----SS
T ss_pred EcCCccccchhhhcccceeeEEecCCccccC
Confidence 2221 1122334689999999866443
No 251
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=94.40 E-value=0.31 Score=49.54 Aligned_cols=134 Identities=17% Similarity=0.130 Sum_probs=81.6
Q ss_pred eeecCCCCCCCcchH-HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHH
Q 013605 71 VFRFPGGGTQFPQGA-DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE 145 (439)
Q Consensus 71 ~~~fp~~~~~f~~g~-~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e 145 (439)
..-|..|+-+|.... ..|.+.+.----.....-++||=+|-|.|--+++|.+. .++-+|++|.+++-+.......
T Consensus 257 ~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr 336 (508)
T COG4262 257 LRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLR 336 (508)
T ss_pred eEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhh
Confidence 334777888887655 33444332211111233468999999999999999986 4889999998776554222211
Q ss_pred ---c----CCCeEEEEecccc-cCCCCCCccEEEecccccccCCCh-----HHHHHHHHHcCCCCeEEEEEeC
Q 013605 146 ---R----GVPAVIGVLGTIK-MPYASRAFDMAHCSRCLIPWGAND-----GRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 146 ---~----~~~~~~~~~d~~~-lp~~d~sFDlV~~~~~l~~~~~d~-----~~~L~ei~RvLkPGG~liis~p 205 (439)
. ...+.+...|+.. +.-..+.||.|+.... .+-.+.. ..+..-+.|.|+++|.+++...
T Consensus 337 ~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~-DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 337 ALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLP-DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred hhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCC-CCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 1 1224445555432 2333558999997531 1111111 3567778899999999999653
No 252
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=94.37 E-value=0.12 Score=50.71 Aligned_cols=102 Identities=17% Similarity=0.133 Sum_probs=52.6
Q ss_pred CCCEEEEECCCCc--hHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEecccccC--CC----CCC
Q 013605 102 TVRTALDTGCGVA--SWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKMP--YA----SRA 166 (439)
Q Consensus 102 ~~~~VLDIGCG~G--~~~~~La~~-----~v~~vdis~~dis~a~i~~a~e~~~~--~~~~~~d~~~lp--~~----d~s 166 (439)
..+..||||||-- .....++++ .|+-+|.+|.-+..+..-. ..... ..+..+|+.+.. +. .+-
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL--~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALL--ADNPRGRTAYVQADLRDPEAILAHPEVRGL 145 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHH--TT-TTSEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhh--cCCCCccEEEEeCCCCCHHHHhcCHHHHhc
Confidence 4568999999954 345555543 5899999885443322211 22223 567777753321 00 112
Q ss_pred cc-----EEEecccccccCC--ChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 167 FD-----MAHCSRCLIPWGA--NDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 167 FD-----lV~~~~~l~~~~~--d~~~~L~ei~RvLkPGG~liis~p 205 (439)
+| .|+...++++..+ ++..++..+...|.||.+++++..
T Consensus 146 lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 146 LDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp --TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred CCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 22 3445556655554 348999999999999999999853
No 253
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.09 E-value=1.5 Score=41.23 Aligned_cols=114 Identities=14% Similarity=0.114 Sum_probs=73.7
Q ss_pred HHHHHHHHHhhcC-CCCCCCCEEEEECCCCchHHHHHhhC---C-cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc
Q 013605 85 ADKYIDQLASVIP-IKNGTVRTALDTGCGVASWGAYLWSR---N-VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK 159 (439)
Q Consensus 85 ~~~~i~~l~~~l~-~~~~~~~~VLDIGCG~G~~~~~La~~---~-v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~ 159 (439)
..++...|..-+. ..-..+.+||=+|+.+|+...++.+- | +.++++|+.... ..+..|.+|. ++.=...|+ +
T Consensus 58 RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~r-eLl~~a~~R~-Ni~PIL~DA-~ 134 (231)
T COG1889 58 RSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMR-ELLDVAEKRP-NIIPILEDA-R 134 (231)
T ss_pred hhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHH-HHHHHHHhCC-Cceeeeccc-C
Confidence 3444445544443 22234459999999999988888774 5 889999997554 4556777763 233333444 3
Q ss_pred cC----CCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 160 MP----YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 160 lp----~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
.| .--+..|+|++.-+ -+.....+..++...||+||+++++.
T Consensus 135 ~P~~Y~~~Ve~VDviy~DVA---Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 135 KPEKYRHLVEKVDVIYQDVA---QPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred CcHHhhhhcccccEEEEecC---CchHHHHHHHHHHHhcccCCeEEEEE
Confidence 33 11345899987431 11122677888999999999888864
No 254
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=93.80 E-value=0.61 Score=44.07 Aligned_cols=93 Identities=14% Similarity=0.055 Sum_probs=56.5
Q ss_pred EEEECCCCchHHHHHhhCC----cEEEeCCccchHHHHHHHHHHcCCC--eEEEEecc-cccCCCCC-CccEEEeccccc
Q 013605 106 ALDTGCGVASWGAYLWSRN----VIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGT-IKMPYASR-AFDMAHCSRCLI 177 (439)
Q Consensus 106 VLDIGCG~G~~~~~La~~~----v~~vdis~~dis~a~i~~a~e~~~~--~~~~~~d~-~~lp~~d~-sFDlV~~~~~l~ 177 (439)
|.||||--|++..+|++.+ ++++|+++.-+..+....+. .+.. +.+..+|- ..+ +.+ ..|.|+.+.+.-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~-~~l~~~i~~rlgdGL~~l--~~~e~~d~ivIAGMGG 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAK-YGLEDRIEVRLGDGLEVL--KPGEDVDTIVIAGMGG 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH-TT-TTTEEEEE-SGGGG----GGG---EEEEEEE-H
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH-cCCcccEEEEECCccccc--CCCCCCCEEEEecCCH
Confidence 6899999999999999985 88999999766666554443 4433 55555553 334 333 378888766431
Q ss_pred ccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 178 PWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 178 ~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
.. ...+|.+....++..-.|++..
T Consensus 78 ~l---I~~ILe~~~~~~~~~~~lILqP 101 (205)
T PF04816_consen 78 EL---IIEILEAGPEKLSSAKRLILQP 101 (205)
T ss_dssp HH---HHHHHHHTGGGGTT--EEEEEE
T ss_pred HH---HHHHHHhhHHHhccCCeEEEeC
Confidence 11 1566777777777767787764
No 255
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=93.44 E-value=0.15 Score=47.94 Aligned_cols=99 Identities=17% Similarity=0.163 Sum_probs=52.6
Q ss_pred EEEEECCCCchHHHHHhhC----CcEEEeCCcc--chHHHHHHHHHHcCCC-----eEEEEecc-cccC--CCCCC-ccE
Q 013605 105 TALDTGCGVASWGAYLWSR----NVIAMSFAPR--DSHEAQVQFALERGVP-----AVIGVLGT-IKMP--YASRA-FDM 169 (439)
Q Consensus 105 ~VLDIGCG~G~~~~~La~~----~v~~vdis~~--dis~a~i~~a~e~~~~-----~~~~~~d~-~~lp--~~d~s-FDl 169 (439)
.+.|||||.|.++..|+.. -+.+++|--. |.-++.++..+..... +.+...++ .-+| |.-+. +-+
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLskm 142 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSKM 142 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccccc
Confidence 6999999999999999887 2667766321 4445555444422111 11111111 2222 11111 111
Q ss_pred EEecccccccCC-------ChHHHHHHHHHcCCCCeEEEEEe
Q 013605 170 AHCSRCLIPWGA-------NDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 170 V~~~~~l~~~~~-------d~~~~L~ei~RvLkPGG~liis~ 204 (439)
.++..-- |+-. -...++.+..-+|++||.++..+
T Consensus 143 ff~fpdp-Hfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 143 FFLFPDP-HFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred eeecCCh-hHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 1111101 1100 11367899999999999999774
No 256
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=93.34 E-value=0.17 Score=44.01 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=27.3
Q ss_pred EEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHH
Q 013605 105 TALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQV 140 (439)
Q Consensus 105 ~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i 140 (439)
++||+|||.|.++..++.. .+.+++.++......+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~ 40 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEE 40 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHH
Confidence 4899999999999998876 27888887755443333
No 257
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=92.73 E-value=0.66 Score=48.03 Aligned_cols=107 Identities=14% Similarity=0.143 Sum_probs=67.0
Q ss_pred CCCCCCEEEEECCCCchHHHHHhh----CC-cEEEeCCccchHHHHHHHHHHcCCCeE-EEEecccccC---CCCCCccE
Q 013605 99 KNGTVRTALDTGCGVASWGAYLWS----RN-VIAMSFAPRDSHEAQVQFALERGVPAV-IGVLGTIKMP---YASRAFDM 169 (439)
Q Consensus 99 ~~~~~~~VLDIGCG~G~~~~~La~----~~-v~~vdis~~dis~a~i~~a~e~~~~~~-~~~~d~~~lp---~~d~sFDl 169 (439)
.+..+.+|||+.+-.|.=+.+++. .| +.+.|.+..- .....+.+...|.... ....|...+| ++. +||-
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r-~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDR 315 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENR-LKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDR 315 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHH-HHHHHHHHHHhCCCceEEEccCcccccccccCc-ccce
Confidence 445567999999999965555554 35 6777765532 2334445556666543 4455555554 444 8999
Q ss_pred EE----ecccccccCC-----------------ChHHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 170 AH----CSRCLIPWGA-----------------NDGRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 170 V~----~~~~l~~~~~-----------------d~~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
|+ |+....-+-+ -..++|..+...+++||+++.++-..
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 99 4442111110 01367888889999999999987544
No 258
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=92.66 E-value=2.9 Score=40.41 Aligned_cols=98 Identities=15% Similarity=0.107 Sum_probs=54.1
Q ss_pred CCCEEEEECCCCc-hHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecc-cccCCC-CCCccEEEecccc
Q 013605 102 TVRTALDTGCGVA-SWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT-IKMPYA-SRAFDMAHCSRCL 176 (439)
Q Consensus 102 ~~~~VLDIGCG~G-~~~~~La~~--~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~-~~lp~~-d~sFDlV~~~~~l 176 (439)
.+++||-+|=+-- +++..|... .++++||+...+ .--.+.|.+.+.++.....|. ..||-. -++||++++..
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll-~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDP-- 120 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLL-DFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDP-- 120 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHH-HHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHH-HHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCC--
Confidence 4568999996655 344444333 599999987543 444557888898888888887 455533 57899999976
Q ss_pred cccCCCh-HHHHHHHHHcCCCCe-EEEEE
Q 013605 177 IPWGAND-GRYMIEVDRVLRPGG-YWVLS 203 (439)
Q Consensus 177 ~~~~~d~-~~~L~ei~RvLkPGG-~liis 203 (439)
++..+. ..++.+....||..| ..+++
T Consensus 121 -PyT~~G~~LFlsRgi~~Lk~~g~~gy~~ 148 (243)
T PF01861_consen 121 -PYTPEGLKLFLSRGIEALKGEGCAGYFG 148 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT-EEEEE
T ss_pred -CCCHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 344333 688889999998766 44444
No 259
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=92.44 E-value=0.31 Score=46.65 Aligned_cols=109 Identities=15% Similarity=0.202 Sum_probs=65.2
Q ss_pred CeeecCCCCC-CCcchHHHHHHHHHhhcCCC----CCCCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHH
Q 013605 70 NVFRFPGGGT-QFPQGADKYIDQLASVIPIK----NGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQV 140 (439)
Q Consensus 70 d~~~fp~~~~-~f~~g~~~~i~~l~~~l~~~----~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i 140 (439)
.++.+|.+-- .-.+|...|+..|.++|... .++..++||||.|.-..--.+--+ .+++.|+++..++.++.
T Consensus 41 ~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ 120 (292)
T COG3129 41 RYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKA 120 (292)
T ss_pred eEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHH
Confidence 3455665443 24567788999999998533 234568999998876543333333 47888898877766665
Q ss_pred HHHHHcCCC--eEEEEec-cc-ccC---CCCCCccEEEecccccc
Q 013605 141 QFALERGVP--AVIGVLG-TI-KMP---YASRAFDMAHCSRCLIP 178 (439)
Q Consensus 141 ~~a~e~~~~--~~~~~~d-~~-~lp---~~d~sFDlV~~~~~l~~ 178 (439)
-.....+.. +.+.... .. -++ -..+.||++.|+..+|.
T Consensus 121 ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 121 IISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred HHHcCcchhhheeEEeccCccccccccccccceeeeEecCCCcch
Confidence 444443333 2222111 11 111 22578999999986643
No 260
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=91.74 E-value=0.27 Score=41.58 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=25.5
Q ss_pred CCEEEEECCCCchHHHHHhhCCcEEEeCC
Q 013605 103 VRTALDTGCGVASWGAYLWSRNVIAMSFA 131 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~~v~~vdis 131 (439)
.....|||||+|.+.--|...|+.+.+++
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD 87 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGID 87 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCccccc
Confidence 34799999999999999999999888884
No 261
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=91.44 E-value=0.089 Score=44.53 Aligned_cols=40 Identities=30% Similarity=0.705 Sum_probs=27.9
Q ss_pred CccEEEecccc--cc--cCCCh-HHHHHHHHHcCCCCeEEEEEeC
Q 013605 166 AFDMAHCSRCL--IP--WGAND-GRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 166 sFDlV~~~~~l--~~--~~~d~-~~~L~ei~RvLkPGG~liis~p 205 (439)
.||+|+|..+. +| +.++. ..+++.+.+.|+|||.|++...
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ 45 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ 45 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 48999996654 12 22222 5799999999999999999853
No 262
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=91.36 E-value=0.58 Score=47.50 Aligned_cols=92 Identities=20% Similarity=0.193 Sum_probs=61.0
Q ss_pred CCCEEEEECCC-CchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEeccccc
Q 013605 102 TVRTALDTGCG-VASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (439)
Q Consensus 102 ~~~~VLDIGCG-~G~~~~~La~~---~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~ 177 (439)
++.+|+=+|+| .|.++.+++.. .|+++|.++ ...+.|++-|.+..+...+.+...--.+.||+|+..-
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~-----~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv--- 237 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSE-----EKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV--- 237 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCCh-----HHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC---
Confidence 34577777776 55788888873 477776654 5667788877665554323222221123499998753
Q ss_pred ccCCChHHHHHHHHHcCCCCeEEEEEeCC
Q 013605 178 PWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (439)
Q Consensus 178 ~~~~d~~~~L~ei~RvLkPGG~liis~p~ 206 (439)
. ...+....+.||+||.+++.+-+
T Consensus 238 ----~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 ----G-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ----C-hhhHHHHHHHHhcCCEEEEECCC
Confidence 1 45678889999999999998743
No 263
>PRK13699 putative methylase; Provisional
Probab=91.05 E-value=0.71 Score=44.27 Aligned_cols=52 Identities=15% Similarity=0.090 Sum_probs=34.8
Q ss_pred EEEeccccc--CCCCCCccEEEeccccc----c-----cCCC-----hHHHHHHHHHcCCCCeEEEEE
Q 013605 152 IGVLGTIKM--PYASRAFDMAHCSRCLI----P-----WGAN-----DGRYMIEVDRVLRPGGYWVLS 203 (439)
Q Consensus 152 ~~~~d~~~l--p~~d~sFDlV~~~~~l~----~-----~~~d-----~~~~L~ei~RvLkPGG~liis 203 (439)
+..+|..++ .++++++|+|+.....- . +..+ ....+.|+.|+|||||.+++.
T Consensus 4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 445665332 47799999999875331 0 0001 146889999999999998864
No 264
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=90.94 E-value=1 Score=47.86 Aligned_cols=116 Identities=16% Similarity=0.119 Sum_probs=75.2
Q ss_pred HHHHHHHHhhcCCCCC-CCCEEEEECCCCchHHHHHhh------C--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEec
Q 013605 86 DKYIDQLASVIPIKNG-TVRTALDTGCGVASWGAYLWS------R--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLG 156 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~-~~~~VLDIGCG~G~~~~~La~------~--~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d 156 (439)
+.....|.++.+.... ....|+=+|.|-|-++...++ + .+.+++-.|..+.--+-..-..-...+.++..|
T Consensus 350 ~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~D 429 (649)
T KOG0822|consen 350 QAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSD 429 (649)
T ss_pred HHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEecc
Confidence 3334455555432222 244678899999987765443 2 467888888755433322222234457788889
Q ss_pred ccccCCCCCCccEEEecccccccCCCh--HHHHHHHHHcCCCCeEEEE
Q 013605 157 TIKMPYASRAFDMAHCSRCLIPWGAND--GRYMIEVDRVLRPGGYWVL 202 (439)
Q Consensus 157 ~~~lp~~d~sFDlV~~~~~l~~~~~d~--~~~L~ei~RvLkPGG~lii 202 (439)
+..++-+....|++++-. +-.+.++. ...|.-+.+.|||.|..|=
T Consensus 430 MR~w~ap~eq~DI~VSEL-LGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 430 MRKWNAPREQADIIVSEL-LGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred ccccCCchhhccchHHHh-hccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 988886668899988754 32444333 7899999999999988764
No 265
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=90.91 E-value=1 Score=41.93 Aligned_cols=90 Identities=19% Similarity=0.204 Sum_probs=53.0
Q ss_pred CCEEEEECCCCchHHHHHhhC----C-cEEEeCCccchHHHHHHHHHHcCCCeEEEEe-cccc--------cCCCCCCcc
Q 013605 103 VRTALDTGCGVASWGAYLWSR----N-VIAMSFAPRDSHEAQVQFALERGVPAVIGVL-GTIK--------MPYASRAFD 168 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~----~-v~~vdis~~dis~a~i~~a~e~~~~~~~~~~-d~~~--------lp~~d~sFD 168 (439)
..+|||+||..|+++.-..++ | |.++|+-.. .--.| +.+..+ |+.+ ..+++...|
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~---------~p~~G--a~~i~~~dvtdp~~~~ki~e~lp~r~Vd 138 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI---------EPPEG--ATIIQGNDVTDPETYRKIFEALPNRPVD 138 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec---------cCCCC--cccccccccCCHHHHHHHHHhCCCCccc
Confidence 459999999999999887776 2 778887432 11112 222222 2211 124678899
Q ss_pred EEEecccccccCC----Ch-------HHHHHHHHHcCCCCeEEEEEe
Q 013605 169 MAHCSRCLIPWGA----ND-------GRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 169 lV~~~~~l~~~~~----d~-------~~~L~ei~RvLkPGG~liis~ 204 (439)
+|++...- .-.. |. ..++.-....++|+|.|+.-.
T Consensus 139 vVlSDMap-naTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~ 184 (232)
T KOG4589|consen 139 VVLSDMAP-NATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL 184 (232)
T ss_pred EEEeccCC-CCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence 99985422 1111 11 134444556789999999763
No 266
>PRK10742 putative methyltransferase; Provisional
Probab=90.23 E-value=1.7 Score=42.24 Aligned_cols=86 Identities=15% Similarity=0.111 Sum_probs=53.1
Q ss_pred HHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHc-------C----CCeEEEEec
Q 013605 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALER-------G----VPAVIGVLG 156 (439)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~--v~~vdis~~dis~a~i~~a~e~-------~----~~~~~~~~d 156 (439)
+.|++.+.+..+..-+|||+=+|.|..+..++.+| |+.++-++... +.++...++ + ..+.+..+|
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~va--alL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVA--ALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHH--HHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 45566665555443489999999999999999986 77777776422 222222222 1 124455555
Q ss_pred cc-ccCCCCCCccEEEeccccc
Q 013605 157 TI-KMPYASRAFDMAHCSRCLI 177 (439)
Q Consensus 157 ~~-~lp~~d~sFDlV~~~~~l~ 177 (439)
.. -|.-...+||+|+.-..+-
T Consensus 154 a~~~L~~~~~~fDVVYlDPMfp 175 (250)
T PRK10742 154 SLTALTDITPRPQVVYLDPMFP 175 (250)
T ss_pred HHHHHhhCCCCCcEEEECCCCC
Confidence 42 2332234799999987553
No 267
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=90.21 E-value=2.3 Score=41.35 Aligned_cols=101 Identities=14% Similarity=0.201 Sum_probs=64.1
Q ss_pred CCEEEEECCCCchHHHHHhhC--------CcEEEeCCccchHHHHHHHHHHc-CCCeEEEEecc----cccCCCCCCcc-
Q 013605 103 VRTALDTGCGVASWGAYLWSR--------NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGT----IKMPYASRAFD- 168 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~--------~v~~vdis~~dis~a~i~~a~e~-~~~~~~~~~d~----~~lp~~d~sFD- 168 (439)
..+.+|+|.|+..=++.|++. .++.+|++..-++........+. ++++.-..++. ..+| .++=-
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~--~~~~Rl 156 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP--RGGRRL 156 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc--CCCeEE
Confidence 458999999999888777663 47889998855555555555544 33333333332 2223 22222
Q ss_pred EEEecccccccCCCh-HHHHHHHHHcCCCCeEEEEEeC
Q 013605 169 MAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 169 lV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~liis~p 205 (439)
+++....+-.+.+++ ..+|..+...|+||-+|++.+.
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 222333344555555 7899999999999999999753
No 268
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=89.87 E-value=1.3 Score=42.95 Aligned_cols=72 Identities=24% Similarity=0.276 Sum_probs=45.5
Q ss_pred CCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEecccc
Q 013605 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCL 176 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l 176 (439)
..+|+|||||.=-++...... .+.++||+...+ +....+....+.+..+.+.|...-+ +....|+.+..-++
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~v-e~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK~l 181 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLV-EFLNAFLAVLGVPHDARVRDLLSDP-PKEPADLALLLKTL 181 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHH-HHHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET-H
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHH-HHHHHHHHhhCCCcceeEeeeeccC-CCCCcchhhHHHHH
Confidence 569999999999998877655 388899876433 2222233445677777777764433 35678999886644
No 269
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=89.61 E-value=2.9 Score=44.80 Aligned_cols=117 Identities=16% Similarity=0.246 Sum_probs=71.4
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC--------CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEe
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--------NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVL 155 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~--------~v~~vdis~~dis~a~i~~a~e~~~~--~~~~~~ 155 (439)
.+.++.|++++.... ..+|+|..||+|++.....+. .+.|.++.+....-+...... ++++ +....+
T Consensus 172 ~~v~~liv~~l~~~~--~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~l-hgi~~~~~i~~~ 248 (489)
T COG0286 172 REVSELIVELLDPEP--RNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLIL-HGIEGDANIRHG 248 (489)
T ss_pred HHHHHHHHHHcCCCC--CCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHH-hCCCcccccccc
Confidence 455566777775423 338999999999876544321 266777766555444443333 3333 345555
Q ss_pred cccccCC-----CCCCccEEEeccccc--ccCCC---------------------h-HHHHHHHHHcCCCCeEEEEEeC
Q 013605 156 GTIKMPY-----ASRAFDMAHCSRCLI--PWGAN---------------------D-GRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 156 d~~~lp~-----~d~sFDlV~~~~~l~--~~~~d---------------------~-~~~L~ei~RvLkPGG~liis~p 205 (439)
++..-|. ..+.||.|+++..+. .|... . ..+++.+...|+|||...+..|
T Consensus 249 dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 249 DTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred ccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence 5533332 346799999876552 12110 1 3788999999999997776654
No 270
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=89.08 E-value=1.5 Score=38.88 Aligned_cols=80 Identities=13% Similarity=0.112 Sum_probs=45.0
Q ss_pred cEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccccC--CCCCCccEEEecccccccCC-----Ch---HHHHHHHHHc
Q 013605 125 VIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMP--YASRAFDMAHCSRCLIPWGA-----ND---GRYMIEVDRV 193 (439)
Q Consensus 125 v~~vdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp--~~d~sFDlV~~~~~l~~~~~-----d~---~~~L~ei~Rv 193 (439)
|.+.||....+............. .+.+...+-+.+. .+.+++|+|+-+....+-.+ .+ -.+++.+.++
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~l 81 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALEL 81 (140)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHh
Confidence 567777664444333333222222 2556655545554 23358999998865544321 11 3789999999
Q ss_pred CCCCeEEEEEe
Q 013605 194 LRPGGYWVLSG 204 (439)
Q Consensus 194 LkPGG~liis~ 204 (439)
|+|||.+++..
T Consensus 82 L~~gG~i~iv~ 92 (140)
T PF06962_consen 82 LKPGGIITIVV 92 (140)
T ss_dssp EEEEEEEEEEE
T ss_pred hccCCEEEEEE
Confidence 99999999986
No 271
>KOG2730 consensus Methylase [General function prediction only]
Probab=88.66 E-value=0.83 Score=43.55 Aligned_cols=96 Identities=19% Similarity=0.178 Sum_probs=59.4
Q ss_pred CCCCCcchHHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCC--eEE
Q 013605 77 GGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVP--AVI 152 (439)
Q Consensus 77 ~~~~f~~g~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~--v~~vdis~~dis~a~i~~a~e~~~~--~~~ 152 (439)
.+.+|.-..+.....++..+.... ....|+|.-||.|..+...+..+ |+++|++|.-+.-+. ..++-.|++ +.|
T Consensus 70 ~e~wfsvTpe~ia~~iA~~v~~~~-~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~Ak-hNaeiYGI~~rItF 147 (263)
T KOG2730|consen 70 REGWFSVTPEKIAEHIANRVVACM-NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACAR-HNAEVYGVPDRITF 147 (263)
T ss_pred ccceEEeccHHHHHHHHHHHHHhc-CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHh-ccceeecCCceeEE
Confidence 344565666776667766653221 22379999999999999888885 778999875442211 122333555 567
Q ss_pred EEecccc----cCCCCCCccEEEecc
Q 013605 153 GVLGTIK----MPYASRAFDMAHCSR 174 (439)
Q Consensus 153 ~~~d~~~----lp~~d~sFDlV~~~~ 174 (439)
.++|..+ +.+.-..+|+|+.+.
T Consensus 148 I~GD~ld~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 148 ICGDFLDLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred EechHHHHHHHHhhhhheeeeeecCC
Confidence 7887533 445444466777654
No 272
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=88.22 E-value=0.45 Score=45.55 Aligned_cols=90 Identities=17% Similarity=0.228 Sum_probs=56.8
Q ss_pred CCEEEEECCCCchHHHHHhhC-------------CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccc--------C
Q 013605 103 VRTALDTGCGVASWGAYLWSR-------------NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM--------P 161 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~-------------~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~l--------p 161 (439)
..+|+|+.+..|+++..|.++ .++++|+.+- . -- ..+...++|+... -
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-a--------PI--~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-A--------PI--EGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-C--------cc--CceEEeecccCCHhHHHHHHHH
Confidence 348999999999999888664 2778888552 1 00 1133445554332 1
Q ss_pred CCCCCccEEEecccc-----cccCCCh-----HHHHHHHHHcCCCCeEEEEE
Q 013605 162 YASRAFDMAHCSRCL-----IPWGAND-----GRYMIEVDRVLRPGGYWVLS 203 (439)
Q Consensus 162 ~~d~sFDlV~~~~~l-----~~~~~d~-----~~~L~ei~RvLkPGG~liis 203 (439)
|....-|+|+|..+- |.+.+.. -.+|.-...+|||||.|+--
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 556689999996432 2221111 24566778999999999864
No 273
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=88.07 E-value=12 Score=35.86 Aligned_cols=107 Identities=16% Similarity=0.105 Sum_probs=65.7
Q ss_pred HHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhCC----cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccc-CC
Q 013605 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN----VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM-PY 162 (439)
Q Consensus 88 ~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~----v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~l-p~ 162 (439)
-+..++++++. +. ++.||||--|++..+|...+ +++.|+++.-+..+..++.+ .+..-.+.+-....+ ++
T Consensus 6 RL~~va~~V~~--~~--~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~-~~l~~~i~vr~~dgl~~l 80 (226)
T COG2384 6 RLTTVANLVKQ--GA--RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKK-NNLSERIDVRLGDGLAVL 80 (226)
T ss_pred HHHHHHHHHHc--CC--ceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHh-cCCcceEEEeccCCcccc
Confidence 34566666632 22 59999999999999999874 78899999766666544444 333333322222223 33
Q ss_pred C-CCCccEEEecccccccCCCh-HHHHHHHHHcCCCCeEEEEE
Q 013605 163 A-SRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLS 203 (439)
Q Consensus 163 ~-d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~liis 203 (439)
. +..+|+|+..... ... ..+|++-...|+-=-++++-
T Consensus 81 ~~~d~~d~ivIAGMG----G~lI~~ILee~~~~l~~~~rlILQ 119 (226)
T COG2384 81 ELEDEIDVIVIAGMG----GTLIREILEEGKEKLKGVERLILQ 119 (226)
T ss_pred CccCCcCEEEEeCCc----HHHHHHHHHHhhhhhcCcceEEEC
Confidence 3 4479999876643 121 56666666666644455554
No 274
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=87.74 E-value=7.6 Score=39.80 Aligned_cols=105 Identities=20% Similarity=0.210 Sum_probs=59.4
Q ss_pred CCCCEEEEECCCCchHHHHHhhC--------CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEecccccC---------
Q 013605 101 GTVRTALDTGCGVASWGAYLWSR--------NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKMP--------- 161 (439)
Q Consensus 101 ~~~~~VLDIGCG~G~~~~~La~~--------~v~~vdis~~dis~a~i~~a~e~~~~--~~~~~~d~~~lp--------- 161 (439)
.++.+|||+.+..|+=+..|++. -+++=|+++.-+. ++.....+-.. ..+...++...|
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~--~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLN--MLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHH--HHHHHHhccCCcceeeecccceeccccccccCch
Confidence 34459999999999988887764 2566666543222 22222233222 222222222222
Q ss_pred CCCCCccEEEec-ccccc-------------cCCC--------hHHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 162 YASRAFDMAHCS-RCLIP-------------WGAN--------DGRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 162 ~~d~sFDlV~~~-~~l~~-------------~~~d--------~~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
.....||-|+|- .|-.. |... .-.+|.+..++||+||.++.++-..
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 233469999862 11110 1000 0267889999999999999987544
No 275
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=87.46 E-value=4.7 Score=39.26 Aligned_cols=100 Identities=15% Similarity=0.145 Sum_probs=55.0
Q ss_pred CCEEEEECCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHH-------HcCCCeEEEEec---ccccCCCCCC-cc
Q 013605 103 VRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFAL-------ERGVPAVIGVLG---TIKMPYASRA-FD 168 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~a~i~~a~-------e~~~~~~~~~~d---~~~lp~~d~s-FD 168 (439)
..+||++|.|+|-.+...+.. .+...|+.. +-........ ..|..+.....+ .....+-... ||
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~--~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPK--VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchh--hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 457999999999666555543 355555532 2112111111 112222222111 1111111222 99
Q ss_pred EEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 169 MAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 169 lV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
+|+++.|+.+- .....+..-+...|..+|.+++..+
T Consensus 165 lilasDvvy~~-~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 165 LILASDVVYEE-ESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred EEEEeeeeecC-CcchhHHHHHHHHHhcCCeEEEEEe
Confidence 99999987432 3447788888888888886666654
No 276
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=87.40 E-value=1.1 Score=44.44 Aligned_cols=102 Identities=16% Similarity=0.153 Sum_probs=65.0
Q ss_pred CCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc-----CCCeEEEEecccc-cC-CCCCCccEE
Q 013605 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALER-----GVPAVIGVLGTIK-MP-YASRAFDMA 170 (439)
Q Consensus 102 ~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~-----~~~~~~~~~d~~~-lp-~~d~sFDlV 170 (439)
..++||=||-|-|.+.+..+.+ ++..+|++. ++.+...++...- +..+.+..+|... +. ...+.||+|
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~-~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDE-NVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhH-HHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 3568999999999999888877 366666654 3444444433321 3445566665422 22 347899999
Q ss_pred EecccccccCCC----hHHHHHHHHHcCCCCeEEEEEeC
Q 013605 171 HCSRCLIPWGAN----DGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 171 ~~~~~l~~~~~d----~~~~L~ei~RvLkPGG~liis~p 205 (439)
+.-.. .+..+. ...++.-+.+.||+||+++..+.
T Consensus 200 i~dss-dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 200 ITDSS-DPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred EEecC-CccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 86321 111111 14677889999999999998764
No 277
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=87.34 E-value=0.5 Score=42.88 Aligned_cols=42 Identities=31% Similarity=0.528 Sum_probs=33.4
Q ss_pred CCCccEEEecccccccC-------CCh---HHHHHHHHHcCCCCeEEEEEeC
Q 013605 164 SRAFDMAHCSRCLIPWG-------AND---GRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 164 d~sFDlV~~~~~l~~~~-------~d~---~~~L~ei~RvLkPGG~liis~p 205 (439)
.++||.+.|..+++|.. -|+ .+.+.++.++|||||.++++.|
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence 46799999887776642 112 5889999999999999999986
No 278
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=87.22 E-value=1.4 Score=41.57 Aligned_cols=98 Identities=10% Similarity=0.029 Sum_probs=49.3
Q ss_pred CEEEEECCCCchHHHHHhh--------CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccC----C----CCCCc
Q 013605 104 RTALDTGCGVASWGAYLWS--------RNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP----Y----ASRAF 167 (439)
Q Consensus 104 ~~VLDIGCG~G~~~~~La~--------~~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp----~----~d~sF 167 (439)
++|+|+|.-.|..+..+++ ..|+++|++.......+++. ......+.+..+|..+.. . ....-
T Consensus 34 d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~-hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 34 DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIES-HPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhh-ccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 4899999999876665543 14999999443222222111 111245778877753321 1 12233
Q ss_pred cEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 168 DMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 168 DlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
.+|+-- ..|..+.....|+-...++++|+|+++.+
T Consensus 113 vlVilD--s~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 113 VLVILD--SSHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp EEEEES--S----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred eEEEEC--CCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 455543 23555566777888999999999999975
No 279
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=87.06 E-value=1.1 Score=43.14 Aligned_cols=88 Identities=17% Similarity=0.144 Sum_probs=46.2
Q ss_pred HHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhCC--cEEEeCCccchH--HHHHHHHHHc-CC------CeEEEEecc-
Q 013605 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSH--EAQVQFALER-GV------PAVIGVLGT- 157 (439)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~--v~~vdis~~dis--~a~i~~a~e~-~~------~~~~~~~d~- 157 (439)
+.|++.+.+..+...+|||.-+|-|+-+.-++..| |++++-+|.... ...++.+... .. .+.+..+|.
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~ 142 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDAL 142 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CC
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHH
Confidence 34566666555544589999999999888777654 888888774221 1122222221 11 256666775
Q ss_pred cccCCCCCCccEEEeccccc
Q 013605 158 IKMPYASRAFDMAHCSRCLI 177 (439)
Q Consensus 158 ~~lp~~d~sFDlV~~~~~l~ 177 (439)
+-|..++.+||+|+.-..+.
T Consensus 143 ~~L~~~~~s~DVVY~DPMFp 162 (234)
T PF04445_consen 143 EYLRQPDNSFDVVYFDPMFP 162 (234)
T ss_dssp CHCCCHSS--SEEEE--S--
T ss_pred HHHhhcCCCCCEEEECCCCC
Confidence 44666689999999977653
No 280
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=86.64 E-value=2.1 Score=41.40 Aligned_cols=97 Identities=16% Similarity=0.167 Sum_probs=63.8
Q ss_pred CCCEEEEECCCCchHHHHHhhC----C-cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCC----CCCCccEEEe
Q 013605 102 TVRTALDTGCGVASWGAYLWSR----N-VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPY----ASRAFDMAHC 172 (439)
Q Consensus 102 ~~~~VLDIGCG~G~~~~~La~~----~-v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~----~d~sFDlV~~ 172 (439)
.+.+||-+|+++|+...+..+- + |.++++|.. .-...+..|+++. ++.-++-|+ +.|. .-+-.|+|++
T Consensus 156 pGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~r-sGRdL~nmAkkRt-NiiPIiEDA-rhP~KYRmlVgmVDvIFa 232 (317)
T KOG1596|consen 156 PGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHR-SGRDLINMAKKRT-NIIPIIEDA-RHPAKYRMLVGMVDVIFA 232 (317)
T ss_pred CCceEEEeeccCCceeehhhcccCCCceEEEEEeccc-chHHHHHHhhccC-CceeeeccC-CCchheeeeeeeEEEEec
Confidence 4458999999999988888775 3 788998874 2344455666653 333344444 2221 1235788877
Q ss_pred cccccccCCCh-HHHHHHHHHcCCCCeEEEEEeC
Q 013605 173 SRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 173 ~~~l~~~~~d~-~~~L~ei~RvLkPGG~liis~p 205 (439)
.- .- ++. ..+..+..-.||+||-|+++..
T Consensus 233 Dv---aq-pdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 233 DV---AQ-PDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred cC---CC-chhhhhhhhhhhhhhccCCeEEEEEe
Confidence 43 11 233 5667788899999999999863
No 281
>PRK11524 putative methyltransferase; Provisional
Probab=85.87 E-value=0.69 Score=45.75 Aligned_cols=55 Identities=15% Similarity=0.104 Sum_probs=36.9
Q ss_pred eEEEEeccccc--CCCCCCccEEEecccccc---c-------CCC-----hHHHHHHHHHcCCCCeEEEEEe
Q 013605 150 AVIGVLGTIKM--PYASRAFDMAHCSRCLIP---W-------GAN-----DGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 150 ~~~~~~d~~~l--p~~d~sFDlV~~~~~l~~---~-------~~d-----~~~~L~ei~RvLkPGG~liis~ 204 (439)
..+..+|.... .+++++||+|++...+-. + ..+ ....+.++.|+|||||.+++..
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 34556666442 366889999999754310 0 000 1368899999999999999864
No 282
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=85.70 E-value=3.2 Score=41.70 Aligned_cols=85 Identities=12% Similarity=0.068 Sum_probs=53.6
Q ss_pred HHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccC-
Q 013605 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP- 161 (439)
Q Consensus 87 ~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp- 161 (439)
-+++++.+.+...++ ..++|.=+|.|..+..+++. .++++|.++..+..+.... .+......+..++...+.
T Consensus 7 Vll~Evl~~L~~~~g--giyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L-~~~~~R~~~i~~nF~~l~~ 83 (305)
T TIGR00006 7 VLLDEVVEGLNIKPD--GIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERL-SDFEGRVVLIHDNFANFFE 83 (305)
T ss_pred hhHHHHHHhcCcCCC--CEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHH-hhcCCcEEEEeCCHHHHHH
Confidence 455666777754433 48999999999999999875 3888999875444333322 222224556666544332
Q ss_pred ----CCCCCccEEEecc
Q 013605 162 ----YASRAFDMAHCSR 174 (439)
Q Consensus 162 ----~~d~sFDlV~~~~ 174 (439)
....++|.|+...
T Consensus 84 ~l~~~~~~~vDgIl~DL 100 (305)
T TIGR00006 84 HLDELLVTKIDGILVDL 100 (305)
T ss_pred HHHhcCCCcccEEEEec
Confidence 2345788888644
No 283
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=85.67 E-value=5.8 Score=39.09 Aligned_cols=90 Identities=23% Similarity=0.292 Sum_probs=53.4
Q ss_pred CCEEEEECCC-CchHHHHHhhC-C--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccc---cc-CCCCCCccEEEecc
Q 013605 103 VRTALDTGCG-VASWGAYLWSR-N--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI---KM-PYASRAFDMAHCSR 174 (439)
Q Consensus 103 ~~~VLDIGCG-~G~~~~~La~~-~--v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~---~l-p~~d~sFDlV~~~~ 174 (439)
+.+||..|+| .|..+..++.. | +++++.+ +...+.+++.+....+...+.. .+ ....+.+|+|+...
T Consensus 166 ~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~ 240 (338)
T cd08254 166 GETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIK-----EEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFV 240 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCC-----HHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECC
Confidence 3478888876 46777777764 5 4444333 3444556666653332211100 00 12356799887542
Q ss_pred cccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 175 CLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 175 ~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
. ....+.++.+.|+++|.++..+
T Consensus 241 g-------~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 241 G-------TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred C-------CHHHHHHHHHHhhcCCEEEEEC
Confidence 1 1457889999999999999865
No 284
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=85.05 E-value=8 Score=39.62 Aligned_cols=97 Identities=18% Similarity=0.129 Sum_probs=57.2
Q ss_pred CCEEEEECCCC-chHHHHHhhC-C---cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccc-----cc-CC-CCCCccEE
Q 013605 103 VRTALDTGCGV-ASWGAYLWSR-N---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-----KM-PY-ASRAFDMA 170 (439)
Q Consensus 103 ~~~VLDIGCG~-G~~~~~La~~-~---v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~-----~l-p~-~d~sFDlV 170 (439)
+.+||.+|||. |..+..+++. + +++++.+ +...+.+++.+. ..+...... .+ .+ ....+|+|
T Consensus 185 g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~-----~~~~~~~~~~~~-~~vi~~~~~~~~~~~l~~~~~~~~~D~v 258 (386)
T cd08283 185 GDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRV-----PERLEMARSHLG-AETINFEEVDDVVEALRELTGGRGPDVC 258 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC-----HHHHHHHHHcCC-cEEEcCCcchHHHHHHHHHcCCCCCCEE
Confidence 45899999987 7777777765 3 4455443 345566666632 222211111 11 12 23469999
Q ss_pred Eeccccc--------------ccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 171 HCSRCLI--------------PWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 171 ~~~~~l~--------------~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
+..-... +-..+....+.++.+.|+++|.+++.+.
T Consensus 259 ld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 259 IDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred EECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 8742110 0112346688999999999999998753
No 285
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=84.64 E-value=3.8 Score=37.30 Aligned_cols=96 Identities=19% Similarity=0.224 Sum_probs=59.8
Q ss_pred EECCCCchHHHHHhhC-----CcEEEeCCccchHH-------HHHHHHHHcCCCeEEEEecccccC----CCCCCccEEE
Q 013605 108 DTGCGVASWGAYLWSR-----NVIAMSFAPRDSHE-------AQVQFALERGVPAVIGVLGTIKMP----YASRAFDMAH 171 (439)
Q Consensus 108 DIGCG~G~~~~~La~~-----~v~~vdis~~dis~-------a~i~~a~e~~~~~~~~~~d~~~lp----~~d~sFDlV~ 171 (439)
=||=|.-+|+..|++. .++++.++..+... ..++..++.|..+.+. .|+..+. ...+.||.|+
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~-VDat~l~~~~~~~~~~FDrIi 80 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHG-VDATKLHKHFRLKNQRFDRII 80 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccC-CCCCcccccccccCCcCCEEE
Confidence 3677777888888876 47777775542211 2222333445544443 3554443 3568899999
Q ss_pred ecccccccCC---C--------h-HHHHHHHHHcCCCCeEEEEEe
Q 013605 172 CSRCLIPWGA---N--------D-GRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 172 ~~~~l~~~~~---d--------~-~~~L~ei~RvLkPGG~liis~ 204 (439)
-++.-..... + . ..+++.+.++|+++|.+.++.
T Consensus 81 FNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl 125 (166)
T PF10354_consen 81 FNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTL 125 (166)
T ss_pred EeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 8764222000 0 0 367899999999999999985
No 286
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=83.40 E-value=2.4 Score=43.35 Aligned_cols=71 Identities=13% Similarity=0.131 Sum_probs=43.5
Q ss_pred hcCCeeecCCCCCCCcchHHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC------------CcEEEeCCccc
Q 013605 67 YEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR------------NVIAMSFAPRD 134 (439)
Q Consensus 67 ~~~d~~~fp~~~~~f~~g~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~------------~v~~vdis~~d 134 (439)
..||.+.-|.=+..|+.-....+-.+.+.+. .+....++|+|.|.|.+...++.. .+..+++|+ .
T Consensus 44 ~~GDFiTApels~lFGella~~~~~~wq~~g--~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~-~ 120 (370)
T COG1565 44 RKGDFITAPELSQLFGELLAEQFLQLWQELG--RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSP-E 120 (370)
T ss_pred ccCCeeechhHHHHHHHHHHHHHHHHHHHhc--CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCH-H
Confidence 3466666666666666555443333333332 233457999999999998877653 367788887 3
Q ss_pred hHHHHH
Q 013605 135 SHEAQV 140 (439)
Q Consensus 135 is~a~i 140 (439)
+...|.
T Consensus 121 L~~~Qk 126 (370)
T COG1565 121 LRARQK 126 (370)
T ss_pred HHHHHH
Confidence 443333
No 287
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=82.59 E-value=1.5 Score=43.35 Aligned_cols=123 Identities=13% Similarity=0.099 Sum_probs=59.1
Q ss_pred CcchHHHHHHHHHhhc-CCCCCCCCEEEEECCCCchHHHHHhhCC---cEEEeCCccch-------HHHHHHHH---HHc
Q 013605 81 FPQGADKYIDQLASVI-PIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDS-------HEAQVQFA---LER 146 (439)
Q Consensus 81 f~~g~~~~i~~l~~~l-~~~~~~~~~VLDIGCG~G~~~~~La~~~---v~~vdis~~di-------s~a~i~~a---~e~ 146 (439)
...+.-..++.+.+-+ ..-.-.+.+|||+|||.|--+......+ +...|++..-+ ..+.-... .+.
T Consensus 94 ~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~ 173 (282)
T KOG2920|consen 94 LWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKEN 173 (282)
T ss_pred EeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhc
Confidence 3344444555555332 1112234599999999998777666554 44444443211 00000000 011
Q ss_pred CCCeEEEEecccccC--CCC-CCccEEEecccccccCCChHHH-HHHHHHcCCCCeEEEEEe
Q 013605 147 GVPAVIGVLGTIKMP--YAS-RAFDMAHCSRCLIPWGANDGRY-MIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 147 ~~~~~~~~~d~~~lp--~~d-~sFDlV~~~~~l~~~~~d~~~~-L~ei~RvLkPGG~liis~ 204 (439)
.....+......+.- ... ..||+|.++....... ..... .......+++.|.+++..
T Consensus 174 ~~~~~i~~s~l~dg~~~~t~~~~ydlIlsSetiy~~~-~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 174 HKVDEILNSLLSDGVFNHTERTHYDLILSSETIYSID-SLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred ccceeccccccccchhhhccccchhhhhhhhhhhCcc-hhhhhHhhhhhhcCCccchhhhhh
Confidence 111111111000111 111 2688888887653322 22333 667778889999988764
No 288
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=81.63 E-value=6.6 Score=39.58 Aligned_cols=94 Identities=20% Similarity=0.182 Sum_probs=53.5
Q ss_pred CCEEEEECCC-CchHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccc--CCCCCCccEEEecccccc
Q 013605 103 VRTALDTGCG-VASWGAYLWSR-NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM--PYASRAFDMAHCSRCLIP 178 (439)
Q Consensus 103 ~~~VLDIGCG-~G~~~~~La~~-~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~l--p~~d~sFDlV~~~~~l~~ 178 (439)
+.+||=+|+| .|.++..+++. |...+-++..+.+....+++++.|... ........ ....+.||+|+-.-.
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~--v~~~~~~~~~~~~~~~~d~vid~~g--- 247 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATY--VNSSKTPVAEVKLVGEFDLIIEATG--- 247 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE--ecCCccchhhhhhcCCCCEEEECcC---
Confidence 4588988886 35566666654 433333322223345666777766542 11111110 001246898886431
Q ss_pred cCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 179 WGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 179 ~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
. ...+.+..++|++||.+++.+.
T Consensus 248 ---~-~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 248 ---V-PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred ---C-HHHHHHHHHHccCCcEEEEEec
Confidence 1 3477889999999999988753
No 289
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=81.15 E-value=7.7 Score=38.94 Aligned_cols=91 Identities=14% Similarity=0.153 Sum_probs=53.3
Q ss_pred CCEEEEECCC-CchHHHHHhhC-C---cEEEeCCccchHHHHHHHHHHcCCCeEEEEe--cccccCCCCCCccEEEeccc
Q 013605 103 VRTALDTGCG-VASWGAYLWSR-N---VIAMSFAPRDSHEAQVQFALERGVPAVIGVL--GTIKMPYASRAFDMAHCSRC 175 (439)
Q Consensus 103 ~~~VLDIGCG-~G~~~~~La~~-~---v~~vdis~~dis~a~i~~a~e~~~~~~~~~~--d~~~lp~~d~sFDlV~~~~~ 175 (439)
+.+||=+||| .|.++..++.. | +++++.++ ...+.+++.|....+... +...+....+.||+|+-.-.
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~-----~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G 244 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSP-----RSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG 244 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCH-----HHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC
Confidence 4588888875 34455555554 4 44565543 456677777654333211 11111111235898876421
Q ss_pred ccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 176 LIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 176 l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
. ...+....+.|++||.+++.+.
T Consensus 245 ------~-~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 ------H-PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ------C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 3467888899999999998764
No 290
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=81.13 E-value=2.6 Score=44.29 Aligned_cols=104 Identities=18% Similarity=0.224 Sum_probs=57.3
Q ss_pred CCEEEEECCCCch--HHHHHhhC----CcEEEeCCccchHHHHHHHHH--HcCCCeEEE-EecccccCCCC-CCccEEEe
Q 013605 103 VRTALDTGCGVAS--WGAYLWSR----NVIAMSFAPRDSHEAQVQFAL--ERGVPAVIG-VLGTIKMPYAS-RAFDMAHC 172 (439)
Q Consensus 103 ~~~VLDIGCG~G~--~~~~La~~----~v~~vdis~~dis~a~i~~a~--e~~~~~~~~-~~d~~~lp~~d-~sFDlV~~ 172 (439)
...++|+|.|.|. ++..++-+ .+..||-+..+......+.-. +.+-...-- +.--..+|... +.||+|+|
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ 280 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVIC 280 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEe
Confidence 4578999888774 33333333 467777765444332222111 111111111 22234566554 45999999
Q ss_pred cccccccCCCh--HHHHHH-HHHcCCCCeEEEEEeCC
Q 013605 173 SRCLIPWGAND--GRYMIE-VDRVLRPGGYWVLSGPP 206 (439)
Q Consensus 173 ~~~l~~~~~d~--~~~L~e-i~RvLkPGG~liis~p~ 206 (439)
++.+++..... ....++ ..+..++||++++....
T Consensus 281 ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g 317 (491)
T KOG2539|consen 281 AHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKG 317 (491)
T ss_pred eeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecC
Confidence 99887765332 233334 44567899999987543
No 291
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=77.09 E-value=7.5 Score=43.13 Aligned_cols=50 Identities=14% Similarity=0.113 Sum_probs=32.3
Q ss_pred EEEeccc-ccCCCCCCccEEEecccccccC-CCh--HHHHHHHHHcCCCCeEEEE
Q 013605 152 IGVLGTI-KMPYASRAFDMAHCSRCLIPWG-AND--GRYMIEVDRVLRPGGYWVL 202 (439)
Q Consensus 152 ~~~~d~~-~lp~~d~sFDlV~~~~~l~~~~-~d~--~~~L~ei~RvLkPGG~lii 202 (439)
+..+|+. .++--...||+++.-. |.+-. ++. ..+|+++.|+++|||.+.-
T Consensus 151 l~~gd~~~~~~~~~~~~d~~~lD~-FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 151 LWFGDANELLPQLDARADAWFLDG-FAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred EEecCHHHHHHhccccccEEEeCC-CCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 3445552 2332235699999754 32311 111 6899999999999999984
No 292
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=76.23 E-value=17 Score=37.44 Aligned_cols=102 Identities=17% Similarity=0.130 Sum_probs=61.3
Q ss_pred CCCEEEEECCCCch----HHHHHhhC-------CcEEEeC----CccchH---HHHHHHHHHcCCCeEEEEe---ccccc
Q 013605 102 TVRTALDTGCGVAS----WGAYLWSR-------NVIAMSF----APRDSH---EAQVQFALERGVPAVIGVL---GTIKM 160 (439)
Q Consensus 102 ~~~~VLDIGCG~G~----~~~~La~~-------~v~~vdi----s~~dis---~a~i~~a~e~~~~~~~~~~---d~~~l 160 (439)
+..+|+|+|.|.|. +...|+.+ .+++++. +...+. ....++|+..|++..|... ..+.+
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l 189 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL 189 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence 44589999999994 44555554 3677776 222222 2334577777888777553 22222
Q ss_pred -----CCCCCCccEEEecccccccCCC------hHHHHHHHHHcCCCCeEEEEE
Q 013605 161 -----PYASRAFDMAHCSRCLIPWGAN------DGRYMIEVDRVLRPGGYWVLS 203 (439)
Q Consensus 161 -----p~~d~sFDlV~~~~~l~~~~~d------~~~~L~ei~RvLkPGG~liis 203 (439)
...++..=+|.|...+++..++ +...+-...|-|+|.-+++..
T Consensus 190 ~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 190 DPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred CHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 2334444455566667776532 334566777889999666554
No 293
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=76.01 E-value=7.3 Score=37.67 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=26.4
Q ss_pred CEEEEECCCCchHHHHHhhC------------CcEEEeCCccchHHHHHH
Q 013605 104 RTALDTGCGVASWGAYLWSR------------NVIAMSFAPRDSHEAQVQ 141 (439)
Q Consensus 104 ~~VLDIGCG~G~~~~~La~~------------~v~~vdis~~dis~a~i~ 141 (439)
-+|+|+|.|+|.++..+++. .+..+++||. +.+.|.+
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~-L~~~Q~~ 68 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPY-LRERQKE 68 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCC-CHHHHHH
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHH-HHHHHHH
Confidence 58999999999999887662 3788999984 4444443
No 294
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=75.88 E-value=17 Score=36.38 Aligned_cols=87 Identities=21% Similarity=0.142 Sum_probs=51.4
Q ss_pred CCCEEEEECCC-CchHHHHHhhC-C--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEeccccc
Q 013605 102 TVRTALDTGCG-VASWGAYLWSR-N--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (439)
Q Consensus 102 ~~~~VLDIGCG-~G~~~~~La~~-~--v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~ 177 (439)
.+.+||=.|+| .|.++..+++. | +++++.++ ...+++++.|....+. .... ..+.+|+++-...
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~-----~~~~~a~~~Ga~~vi~---~~~~--~~~~~d~~i~~~~-- 232 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGA-----AARRLALALGAASAGG---AYDT--PPEPLDAAILFAP-- 232 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCCh-----HHHHHHHHhCCceecc---cccc--CcccceEEEECCC--
Confidence 34589988875 33444555554 4 44444433 4466777777654332 1111 1235887654321
Q ss_pred ccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 178 PWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 178 ~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
. ...+....+.|++||.+++.+.
T Consensus 233 ----~-~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 233 ----A-GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ----c-HHHHHHHHHhhCCCcEEEEEec
Confidence 1 3478889999999999998763
No 295
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=75.37 E-value=13 Score=37.90 Aligned_cols=89 Identities=22% Similarity=0.219 Sum_probs=56.3
Q ss_pred EEEEECCCC-chHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccc-----ccCCCC-CCccEEEec
Q 013605 105 TALDTGCGV-ASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-----KMPYAS-RAFDMAHCS 173 (439)
Q Consensus 105 ~VLDIGCG~-G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~-----~lp~~d-~sFDlV~~~ 173 (439)
+|+=+|||+ |.++..+++. .++++|.++ ..+++|++.+....+.....+ .+.... ..||+|+-.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~-----~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~ 245 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP-----ERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEA 245 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH-----HHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEEC
Confidence 899999995 6666666654 367776654 667778774332222211110 111222 369999854
Q ss_pred ccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 174 RCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 174 ~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
-. ....+..+.+.+||||.+++.+-
T Consensus 246 ~G-------~~~~~~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 246 VG-------SPPALDQALEALRPGGTVVVVGV 270 (350)
T ss_pred CC-------CHHHHHHHHHHhcCCCEEEEEec
Confidence 32 24588999999999999999763
No 296
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=75.04 E-value=7.2 Score=38.38 Aligned_cols=64 Identities=11% Similarity=-0.048 Sum_probs=40.7
Q ss_pred EEEEECCCCchHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCC--CCCccEEEecc
Q 013605 105 TALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA--SRAFDMAHCSR 174 (439)
Q Consensus 105 ~VLDIGCG~G~~~~~La~~~---v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~--d~sFDlV~~~~ 174 (439)
+|+|+-||.|.++..+...| +.++|+++ .+++..+.+... .+...|+..+... ...+|+++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~-----~a~~~~~~N~~~-~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDK-----SAAETYEANFPN-KLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCH-----HHHHHHHHhCCC-CCccCccccCchhhcCCCCCEEEeCC
Confidence 69999999999988888776 56677755 333333333222 2445666555422 35699999654
No 297
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=74.78 E-value=4.6 Score=34.11 Aligned_cols=83 Identities=28% Similarity=0.316 Sum_probs=52.7
Q ss_pred CCchHHHHHhhC-C--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccc---cc-C-CCCCCccEEEecccccccCCCh
Q 013605 112 GVASWGAYLWSR-N--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI---KM-P-YASRAFDMAHCSRCLIPWGAND 183 (439)
Q Consensus 112 G~G~~~~~La~~-~--v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~---~l-p-~~d~sFDlV~~~~~l~~~~~d~ 183 (439)
|.|.++..+++. | +++++.+ +...+.+++.|....+...+.. .+ . .....+|+|+-.-. .
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~-----~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-------~ 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRS-----EEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-------S 68 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESS-----HHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-------S
T ss_pred ChHHHHHHHHHHcCCEEEEEECC-----HHHHHHHHhhcccccccccccccccccccccccccceEEEEecC-------c
Confidence 457777777765 4 5566554 3566778887744333221211 11 1 23357999885431 2
Q ss_pred HHHHHHHHHcCCCCeEEEEEeCC
Q 013605 184 GRYMIEVDRVLRPGGYWVLSGPP 206 (439)
Q Consensus 184 ~~~L~ei~RvLkPGG~liis~p~ 206 (439)
...+++...+|+++|.+++.+-.
T Consensus 69 ~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 69 GDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp HHHHHHHHHHEEEEEEEEEESST
T ss_pred HHHHHHHHHHhccCCEEEEEEcc
Confidence 67899999999999999998743
No 298
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=74.71 E-value=50 Score=34.23 Aligned_cols=92 Identities=9% Similarity=-0.001 Sum_probs=57.3
Q ss_pred EEEEECCCCchHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeE-EEEecccccCCCCCCccEEEecccccccCCCh
Q 013605 105 TALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAV-IGVLGTIKMPYASRAFDMAHCSRCLIPWGAND 183 (439)
Q Consensus 105 ~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~a~i~~a~e~~~~~~-~~~~d~~~lp~~d~sFDlV~~~~~l~~~~~d~ 183 (439)
.||=++=.-|.++..|+..+++.+ -+....+.+..+.+...+.+.. +...+. .-+++ +.+|+|+. .++...
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~~-~ds~~~~~~~~~n~~~n~~~~~~~~~~~~-~~~~~-~~~d~vl~-----~~PK~~ 118 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYSI-GDSYISELATRENLRLNGIDESSVKFLDS-TADYP-QQPGVVLI-----KVPKTL 118 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCee-ehHHHHHHHHHHHHHHcCCCcccceeecc-ccccc-CCCCEEEE-----EeCCCH
Confidence 699999999999999997766433 1111233444555556666533 222222 11223 34898876 344333
Q ss_pred ---HHHHHHHHHcCCCCeEEEEEe
Q 013605 184 ---GRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 184 ---~~~L~ei~RvLkPGG~liis~ 204 (439)
...|..+.++|.||+.++..+
T Consensus 119 ~~l~~~l~~l~~~l~~~~~ii~g~ 142 (378)
T PRK15001 119 ALLEQQLRALRKVVTSDTRIIAGA 142 (378)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEEE
Confidence 567888889999999987554
No 299
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=74.29 E-value=18 Score=38.14 Aligned_cols=99 Identities=13% Similarity=0.023 Sum_probs=54.3
Q ss_pred CCCCCccCCCCCCHHHHHHHHHHHhhcCCeeecCCCCCCCcchHHHHHHHHHhhcCCCC----CCCCEEEEECCCCchHH
Q 013605 42 RDYVPYANAPYKSLTVEKAIQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKN----GTVRTALDTGCGVASWG 117 (439)
Q Consensus 42 ~d~~w~~nvp~~~l~~~k~~q~w~~~~~d~~~fp~~~~~f~~g~~~~i~~l~~~l~~~~----~~~~~VLDIGCG~G~~~ 117 (439)
...-|.-...+.+...+.++..+.+--.|. ..-.+|...|...+...+ .....|||||.|||.++
T Consensus 13 G~~EWiv~ee~yd~~qelArSsy~DMl~D~-----------dRNiky~~gi~~tIte~kh~~~~gkv~vLdigtGTGLLS 81 (636)
T KOG1501|consen 13 GNSEWIVIEENYDTDQELARSSYLDMLNDS-----------DRNIKYRLGIEKTITEPKHVLDIGKVFVLDIGTGTGLLS 81 (636)
T ss_pred CceeEEEeecccchHHHHHHhhHHHHhhcc-----------cccHHHHHHHHHHhcccceeccCceEEEEEccCCccHHH
Confidence 344555444445555556666555421111 122444445554443221 22347999999999998
Q ss_pred HHHhhCC---cEEEeCCccchHHHHHHHHHHcCCCeEE
Q 013605 118 AYLWSRN---VIAMSFAPRDSHEAQVQFALERGVPAVI 152 (439)
Q Consensus 118 ~~La~~~---v~~vdis~~dis~a~i~~a~e~~~~~~~ 152 (439)
...+..| ++++++--.|. ..+++...+.|....+
T Consensus 82 mMAvragaD~vtA~EvfkPM~-d~arkI~~kng~SdkI 118 (636)
T KOG1501|consen 82 MMAVRAGADSVTACEVFKPMV-DLARKIMHKNGMSDKI 118 (636)
T ss_pred HHHHHhcCCeEEeehhhchHH-HHHHHHHhcCCCccce
Confidence 8777764 77777765443 3444555555554333
No 300
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.70 E-value=9.1 Score=34.44 Aligned_cols=110 Identities=7% Similarity=-0.045 Sum_probs=59.4
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhCC---cEEEeCCccchHHHHHHHHHHc-CCCeEEEEecccccC
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIKMP 161 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~---v~~vdis~~dis~a~i~~a~e~-~~~~~~~~~d~~~lp 161 (439)
.+.++.+..++...+ ..+.+|+|.|.|......++.+ .+++++.|--+.-+....-++. +....|...|+....
T Consensus 58 teQv~nVLSll~~n~--~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~d 135 (199)
T KOG4058|consen 58 TEQVENVLSLLRGNP--KGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVD 135 (199)
T ss_pred HHHHHHHHHHccCCC--CCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcc
Confidence 334445555554322 2479999999999988888765 6778887754433333222211 234556666666665
Q ss_pred CCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEE
Q 013605 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (439)
Q Consensus 162 ~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis 203 (439)
+.+-.+=+|+-... ..++ +-..+..-|..|..++-.
T Consensus 136 l~dy~~vviFgaes---~m~d---Le~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 136 LRDYRNVVIFGAES---VMPD---LEDKLRTELPANTRVVAC 171 (199)
T ss_pred ccccceEEEeehHH---HHhh---hHHHHHhhCcCCCeEEEE
Confidence 55544544444332 2222 223333345555555544
No 301
>PHA01634 hypothetical protein
Probab=73.48 E-value=15 Score=32.23 Aligned_cols=30 Identities=23% Similarity=0.224 Sum_probs=25.2
Q ss_pred CCEEEEECCCCchHHHHHhhCC---cEEEeCCc
Q 013605 103 VRTALDTGCGVASWGAYLWSRN---VIAMSFAP 132 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~~---v~~vdis~ 132 (439)
+++|+|||.+.|..+.+++-+| |++++.++
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~ 61 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLRGASFVVQYEKEE 61 (156)
T ss_pred CCEEEEecCCccchhhHHhhcCccEEEEeccCH
Confidence 4589999999999999988875 77777766
No 302
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=71.94 E-value=32 Score=33.80 Aligned_cols=90 Identities=18% Similarity=0.159 Sum_probs=50.0
Q ss_pred CCEEEEECCC-CchHHHHHhhC-C--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEecccccc
Q 013605 103 VRTALDTGCG-VASWGAYLWSR-N--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (439)
Q Consensus 103 ~~~VLDIGCG-~G~~~~~La~~-~--v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~ 178 (439)
+.+||-+|+| .|..+..++.. | +++++-+ +...+.+.+.+....+.........-..+.+|+|+....
T Consensus 163 ~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~--- 234 (330)
T cd08245 163 GERVAVLGIGGLGHLAVQYARAMGFETVAITRS-----PDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVV--- 234 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCC---
Confidence 4478888886 56665566655 4 3444332 234455555553322221111000001246898876321
Q ss_pred cCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 179 WGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 179 ~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
....+.++.+.|+++|.++..+
T Consensus 235 ----~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 ----SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred ----cHHHHHHHHHhcccCCEEEEEC
Confidence 1346788899999999998765
No 303
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=71.53 E-value=25 Score=31.92 Aligned_cols=90 Identities=12% Similarity=0.069 Sum_probs=54.2
Q ss_pred CCEEEEECCCCchHHHHH---hhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEecc---cccC--CCCCCccEEEecc
Q 013605 103 VRTALDTGCGVASWGAYL---WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT---IKMP--YASRAFDMAHCSR 174 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~L---a~~~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~---~~lp--~~d~sFDlV~~~~ 174 (439)
..+|+-|||=+-.....- ....+.-.|++.+ ++. -+.+ .+..-|. ..+| + .++||+|++-.
T Consensus 26 ~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~R--------F~~-~~~~-~F~fyD~~~p~~~~~~l-~~~~d~vv~DP 94 (162)
T PF10237_consen 26 DTRIACLSTPSLYEALKKESKPRIQSFLLEYDRR--------FEQ-FGGD-EFVFYDYNEPEELPEEL-KGKFDVVVIDP 94 (162)
T ss_pred CCEEEEEeCcHHHHHHHhhcCCCccEEEEeecch--------HHh-cCCc-ceEECCCCChhhhhhhc-CCCceEEEECC
Confidence 358999998877665554 1225777888542 333 2222 2333343 3333 3 57999999987
Q ss_pred cccccCCCh-HHHHHHHHHcCCCCeEEEEEeC
Q 013605 175 CLIPWGAND-GRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 175 ~l~~~~~d~-~~~L~ei~RvLkPGG~liis~p 205 (439)
.+ +.++- .....-+.-++++++.+++.++
T Consensus 95 PF--l~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 95 PF--LSEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred CC--CCHHHHHHHHHHHHHHhCccceEEEecH
Confidence 54 22222 3444556666688898888864
No 304
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=69.73 E-value=25 Score=34.74 Aligned_cols=91 Identities=22% Similarity=0.259 Sum_probs=50.5
Q ss_pred CCCEEEEECCCC-chHHHHHhhC-Cc---EEEeCCccchHHHHHHHHHHcCCCeEEEEec--ccccCCCCCCccEEEecc
Q 013605 102 TVRTALDTGCGV-ASWGAYLWSR-NV---IAMSFAPRDSHEAQVQFALERGVPAVIGVLG--TIKMPYASRAFDMAHCSR 174 (439)
Q Consensus 102 ~~~~VLDIGCG~-G~~~~~La~~-~v---~~vdis~~dis~a~i~~a~e~~~~~~~~~~d--~~~lp~~d~sFDlV~~~~ 174 (439)
.+.+||-.|||. |..+..+++. |+ ++++.+ +...+.+++.+....+...+ ...+....+.+|+|+...
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s-----~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~ 239 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLA-----DAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEAS 239 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCC-----HHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECC
Confidence 345888888764 5566666654 54 344332 23334555555432221111 111221223599988643
Q ss_pred cccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 175 CLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 175 ~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
. ....+.++.+.|+++|.++..+
T Consensus 240 g-------~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 240 G-------APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred C-------CHHHHHHHHHHHhcCCEEEEEe
Confidence 1 1346788999999999998764
No 305
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=68.66 E-value=41 Score=31.47 Aligned_cols=92 Identities=24% Similarity=0.212 Sum_probs=51.7
Q ss_pred CCCEEEEECCCC-chHHHHHhhC-C--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc---c-CCCCCCccEEEec
Q 013605 102 TVRTALDTGCGV-ASWGAYLWSR-N--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK---M-PYASRAFDMAHCS 173 (439)
Q Consensus 102 ~~~~VLDIGCG~-G~~~~~La~~-~--v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~---l-p~~d~sFDlV~~~ 173 (439)
.+.+||-.|+|. |..+..++.. + +.+++.++ ...+.+++.+....+...+... + ....+.+|+|+..
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 208 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSD-----EKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDA 208 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH-----HHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEEC
Confidence 345899999985 5555556554 4 55554433 3334444444322221111100 0 1124569999864
Q ss_pred ccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 174 RCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 174 ~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
.. . ...+..+.+.|+++|.++..+.
T Consensus 209 ~~------~-~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 209 VG------G-PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred CC------C-HHHHHHHHHhcccCCEEEEEcc
Confidence 31 1 2467778899999999998754
No 306
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=67.64 E-value=33 Score=37.00 Aligned_cols=98 Identities=18% Similarity=0.138 Sum_probs=56.5
Q ss_pred CCCEEEEECCCCchHH-HHHhhC-C--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccc---------ccC-------
Q 013605 102 TVRTALDTGCGVASWG-AYLWSR-N--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI---------KMP------- 161 (439)
Q Consensus 102 ~~~~VLDIGCG~G~~~-~~La~~-~--v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~---------~lp------- 161 (439)
.+.+|+=+|||.-.+. ...+.. | |+++|.++ ...+.+++.|........... .+.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~-----~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~ 238 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP-----EVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAE 238 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHH
Confidence 3569999999975544 444443 4 66666654 555667766543221111000 000
Q ss_pred ---CCC--CCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 162 ---YAS--RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 162 ---~~d--~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
+.+ +.+|+|+..-. .+-...+..+.+++.+.+||||.++..+.
T Consensus 239 ~~~~~~~~~gaDVVIetag-~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 239 MALFAEQAKEVDIIITTAL-IPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHhccCCCCEEEECCC-CCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 111 46999998642 22222233446999999999999887653
No 307
>PF13051 DUF3912: Protein of unknown function (DUF3912)
Probab=66.64 E-value=1.3 Score=32.77 Aligned_cols=10 Identities=30% Similarity=1.129 Sum_probs=8.4
Q ss_pred ccccccccCC
Q 013605 399 IGIYHDWYKF 408 (439)
Q Consensus 399 ig~~hdwce~ 408 (439)
+|.+|.|||.
T Consensus 57 vgqfh~wceq 66 (68)
T PF13051_consen 57 VGQFHEWCEQ 66 (68)
T ss_pred HHHHHHHHhh
Confidence 5789999995
No 308
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=65.49 E-value=18 Score=29.71 Aligned_cols=78 Identities=15% Similarity=0.011 Sum_probs=48.5
Q ss_pred EEEEECCCCchHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEecccccccCCChH
Q 013605 105 TALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDG 184 (439)
Q Consensus 105 ~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~~~d~~ 184 (439)
+|| +-||+|.-+..++ ....+.+.+++.+..+...+...++-....+|+|+... ...
T Consensus 5 ~IL-l~C~~G~sSS~l~---------------~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~p-------qi~ 61 (95)
T TIGR00853 5 NIL-LLCAAGMSTSLLV---------------NKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAP-------QVA 61 (95)
T ss_pred EEE-EECCCchhHHHHH---------------HHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECc-------hHH
Confidence 455 6788885443332 34456778889888887777655543335689998864 224
Q ss_pred HHHHHHHHcCCCCeEEEEEeC
Q 013605 185 RYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 185 ~~L~ei~RvLkPGG~liis~p 205 (439)
..+.++...+.+-|.=+...+
T Consensus 62 ~~~~~i~~~~~~~~ipv~~I~ 82 (95)
T TIGR00853 62 YMLPDLKKETDKKGIPVEVIN 82 (95)
T ss_pred HHHHHHHHHhhhcCCCEEEeC
Confidence 456777777766554444443
No 309
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=65.47 E-value=17 Score=37.72 Aligned_cols=96 Identities=14% Similarity=0.186 Sum_probs=58.7
Q ss_pred CEEEEECCCCchHHH-HHhh-C---CcEEEeCCccchHHHHHHHHHHcCCCe---EEEEeccccc-CCCCCCccEEEecc
Q 013605 104 RTALDTGCGVASWGA-YLWS-R---NVIAMSFAPRDSHEAQVQFALERGVPA---VIGVLGTIKM-PYASRAFDMAHCSR 174 (439)
Q Consensus 104 ~~VLDIGCG~G~~~~-~La~-~---~v~~vdis~~dis~a~i~~a~e~~~~~---~~~~~d~~~l-p~~d~sFDlV~~~~ 174 (439)
.+|||.=+|+|-=+. +..+ . .|++-|+++... +...+.+.-+++.. .+...|+..+ ......||+|=...
T Consensus 51 ~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~-~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDP 129 (377)
T PF02005_consen 51 IRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAV-ELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDP 129 (377)
T ss_dssp EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHH-HHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred ceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHH-HHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCC
Confidence 489999999996554 4444 2 377778877433 33344445555554 5556666443 23467899986542
Q ss_pred cccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 175 CLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 175 ~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
+ ..+..+|..+.+.++.||++.++..
T Consensus 130 ----f-GSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 130 ----F-GSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp ----S-S--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred ----C-CCccHhHHHHHHHhhcCCEEEEecc
Confidence 2 2457899999999999999999853
No 310
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=65.37 E-value=93 Score=30.35 Aligned_cols=101 Identities=10% Similarity=0.019 Sum_probs=62.0
Q ss_pred CEEEEECCCCchHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcC----CCeEEEEeccc-c----c---CCCCCCccEE
Q 013605 104 RTALDTGCGVASWGAYLWSR-NVIAMSFAPRDSHEAQVQFALERG----VPAVIGVLGTI-K----M---PYASRAFDMA 170 (439)
Q Consensus 104 ~~VLDIGCG~G~~~~~La~~-~v~~vdis~~dis~a~i~~a~e~~----~~~~~~~~d~~-~----l---p~~d~sFDlV 170 (439)
..|+.+|||-=+-...|... ++...+++-.+..+...+...+.+ ....++..|.. . | .|....--++
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl~ 162 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTAW 162 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCeee
Confidence 47999999998877777543 588888866555444444444322 22344444542 1 1 1222223355
Q ss_pred EecccccccCCCh-HHHHHHHHHcCCCCeEEEEEe
Q 013605 171 HCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 171 ~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~liis~ 204 (439)
++-.++..+.++. ..+|+.+.+...||+.+++..
T Consensus 163 i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~ 197 (260)
T TIGR00027 163 LWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDY 197 (260)
T ss_pred eecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 5555554554333 678899998888999999874
No 311
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=65.24 E-value=35 Score=34.55 Aligned_cols=90 Identities=19% Similarity=0.160 Sum_probs=50.8
Q ss_pred CCEEEEECCC-CchHHHHHhhC-C---cEEEeCCccchHHHHHHHHHHcCCCeEEEEecc---ccc-CCCCCCccEEEec
Q 013605 103 VRTALDTGCG-VASWGAYLWSR-N---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT---IKM-PYASRAFDMAHCS 173 (439)
Q Consensus 103 ~~~VLDIGCG-~G~~~~~La~~-~---v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~---~~l-p~~d~sFDlV~~~ 173 (439)
+.+||=.|+| .|.++..+++. | |++++.+ +...+++++.|....+...+. +.+ ....+.+|+|+-.
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~-----~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~ 266 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLN-----EDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEM 266 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCC-----HHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEEC
Confidence 3477778875 34455555554 4 4455443 345567776665433321110 011 0112368988853
Q ss_pred ccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 174 RCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 174 ~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
.. ....+....+.|++||.+++.+
T Consensus 267 ~G-------~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 267 AG-------SVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CC-------ChHHHHHHHHHHhcCCEEEEEc
Confidence 21 1356788889999999998865
No 312
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=64.81 E-value=45 Score=33.59 Aligned_cols=91 Identities=18% Similarity=0.141 Sum_probs=51.3
Q ss_pred CCEEEEECCC-CchHHHHHhhC-C---cEEEeCCccchHHHHHHHHHHcCCCeEEEEecc---ccc-C-CCCCCccEEEe
Q 013605 103 VRTALDTGCG-VASWGAYLWSR-N---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT---IKM-P-YASRAFDMAHC 172 (439)
Q Consensus 103 ~~~VLDIGCG-~G~~~~~La~~-~---v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~---~~l-p-~~d~sFDlV~~ 172 (439)
+.+||=.|+| .|..+..+++. | +++++.+ +...+++++.|....+...+. ..+ . .....+|+|+-
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~-----~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid 251 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDID-----DRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVID 251 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC-----HHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEE
Confidence 4588888875 24455555554 4 4445443 345667776665332211110 000 0 12235898875
Q ss_pred cccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 173 SRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 173 ~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
.-. . ...+.+..+.|++||.+++.+.
T Consensus 252 ~~g------~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 252 AVG------R-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCC------C-HHHHHHHHHHhccCCEEEEECC
Confidence 321 1 3467788899999999998763
No 313
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=63.60 E-value=27 Score=35.42 Aligned_cols=91 Identities=13% Similarity=0.044 Sum_probs=48.2
Q ss_pred CCEEEEECCC-CchHHHHHhhC-C--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEecccccc
Q 013605 103 VRTALDTGCG-VASWGAYLWSR-N--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (439)
Q Consensus 103 ~~~VLDIGCG-~G~~~~~La~~-~--v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~ 178 (439)
+.+||=.|+| .|.++..+++. | +++++.++. ...+.+++.|....+...+...+.-..+.+|+|+-...
T Consensus 184 g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~----~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g--- 256 (360)
T PLN02586 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSN----KEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVS--- 256 (360)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc----hhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCC---
Confidence 3478778875 34555555554 4 455555432 11233444554322211111111100124888875321
Q ss_pred cCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 179 WGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 179 ~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
....+.+..+.|++||.++..+
T Consensus 257 ----~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 257 ----AVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred ----CHHHHHHHHHHhcCCcEEEEeC
Confidence 1346788899999999999775
No 314
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=62.89 E-value=59 Score=31.92 Aligned_cols=90 Identities=16% Similarity=0.117 Sum_probs=50.2
Q ss_pred CCEEEEECCC-CchHHHHHhhC-C---cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc----cCCCCCCccEEEec
Q 013605 103 VRTALDTGCG-VASWGAYLWSR-N---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK----MPYASRAFDMAHCS 173 (439)
Q Consensus 103 ~~~VLDIGCG-~G~~~~~La~~-~---v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~----lp~~d~sFDlV~~~ 173 (439)
+.+||-+|+| .|..+..+++. | +.+++-++ ...+.+.+.+....+. .+... .....+.+|+|+..
T Consensus 160 g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~-----~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~vd~v~~~ 233 (334)
T cd08234 160 GDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNE-----EKLELAKKLGATETVD-PSREDPEAQKEDNPYGFDVVIEA 233 (334)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCH-----HHHHHHHHhCCeEEec-CCCCCHHHHHHhcCCCCcEEEEC
Confidence 3488888865 24455555554 4 33343332 3344555555432211 11111 01134569999864
Q ss_pred ccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 174 RCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 174 ~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
.. ....+.++.+.|+++|.++..+.
T Consensus 234 ~~-------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 234 TG-------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred CC-------ChHHHHHHHHHHhcCCEEEEEec
Confidence 21 14578889999999999987653
No 315
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=61.65 E-value=18 Score=29.71 Aligned_cols=63 Identities=16% Similarity=0.014 Sum_probs=39.7
Q ss_pred HHHHHHHHcCCCeEEEEecccccCCCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 138 AQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 138 a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
...+.+.+++.+..+...+.....-....+|+|+++. .....+.++.+.+.+.+.=+...++.
T Consensus 18 ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~P-------qv~~~~~~i~~~~~~~~~pv~~I~~~ 80 (96)
T cd05564 18 KMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGP-------QVRYMLDEVKKKAAEYGIPVAVIDMM 80 (96)
T ss_pred HHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEECh-------hHHHHHHHHHHHhccCCCcEEEcChH
Confidence 4456778888888777777655543345699998864 22446677776655555544444433
No 316
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=60.84 E-value=45 Score=34.97 Aligned_cols=98 Identities=16% Similarity=0.096 Sum_probs=56.3
Q ss_pred HHHHHHhhcCCCCCCCCEEEEECCCC-chHHHHHhhC-C--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCC
Q 013605 88 YIDQLASVIPIKNGTVRTALDTGCGV-ASWGAYLWSR-N--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA 163 (439)
Q Consensus 88 ~i~~l~~~l~~~~~~~~~VLDIGCG~-G~~~~~La~~-~--v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~ 163 (439)
.++.+.+.... .-.+++|+=+|+|. |.....++.. | |+++|.++ .....|.+.|.... +....
T Consensus 188 ~~~~i~r~t~~-~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~-----~R~~~A~~~G~~~~----~~~e~--- 254 (413)
T cd00401 188 LIDGIKRATDV-MIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP-----ICALQAAMEGYEVM----TMEEA--- 254 (413)
T ss_pred hHHHHHHhcCC-CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh-----hhHHHHHhcCCEEc----cHHHH---
Confidence 44566655532 12355999999995 5444444443 4 67777755 23345555554211 11111
Q ss_pred CCCccEEEecccccccCCChHHHHH-HHHHcCCCCeEEEEEeC
Q 013605 164 SRAFDMAHCSRCLIPWGANDGRYMI-EVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 164 d~sFDlV~~~~~l~~~~~d~~~~L~-ei~RvLkPGG~liis~p 205 (439)
-..+|+|+... .. ...+. +..+.+|+||.++..+.
T Consensus 255 v~~aDVVI~at------G~-~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 255 VKEGDIFVTTT------GN-KDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred HcCCCEEEECC------CC-HHHHHHHHHhcCCCCcEEEEeCC
Confidence 13479998743 12 23444 45899999999988864
No 317
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=60.83 E-value=75 Score=31.27 Aligned_cols=91 Identities=12% Similarity=0.102 Sum_probs=52.7
Q ss_pred CCEEEEECC--CCchHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccc-----CCCCCCccEEEecc
Q 013605 103 VRTALDTGC--GVASWGAYLWSR-NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM-----PYASRAFDMAHCSR 174 (439)
Q Consensus 103 ~~~VLDIGC--G~G~~~~~La~~-~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~l-----p~~d~sFDlV~~~~ 174 (439)
+.+||=.|. |.|..+..+++. |..++-++. +....+++++.|....+...+...+ ....+.+|+|+-..
T Consensus 139 g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~ 215 (325)
T TIGR02825 139 GETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNV 215 (325)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECC
Confidence 448888884 467777777765 543333321 2345566666665433321111010 11234689887532
Q ss_pred cccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 175 CLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 175 ~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
....+.+..++|++||.++..+
T Consensus 216 --------G~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 216 --------GGEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred --------CHHHHHHHHHHhCcCcEEEEec
Confidence 1235688899999999999765
No 318
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=59.29 E-value=27 Score=37.62 Aligned_cols=92 Identities=18% Similarity=0.111 Sum_probs=53.7
Q ss_pred CCEEEEECCCCc-hHHHHHhhC-C--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc-------------------
Q 013605 103 VRTALDTGCGVA-SWGAYLWSR-N--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK------------------- 159 (439)
Q Consensus 103 ~~~VLDIGCG~G-~~~~~La~~-~--v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~------------------- 159 (439)
+.+||=+|+|.- ..+..++.. | ++++|.++ ...+.+++.+.. +...+...
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~-----~rle~a~~lGa~--~v~v~~~e~g~~~~gYa~~~s~~~~~~ 236 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP-----EVKEQVQSMGAE--FLELDFKEEGGSGDGYAKVMSEEFIAA 236 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHcCCe--EEeccccccccccccceeecCHHHHHH
Confidence 469999999965 444444443 4 56666644 334455554432 21111100
Q ss_pred ----cCCCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEE
Q 013605 160 ----MPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVL 202 (439)
Q Consensus 160 ----lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lii 202 (439)
++-.-..+|+|++.- +++-.+.+....+++.+.+|||+.++-
T Consensus 237 ~~~~~~e~~~~~DIVI~Ta-lipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 237 EMELFAAQAKEVDIIITTA-LIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHhCCCCEEEECc-ccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 111134699998764 434443445678899999999998774
No 319
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=57.50 E-value=18 Score=34.63 Aligned_cols=116 Identities=16% Similarity=0.119 Sum_probs=58.7
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhh---C---CcEEEeCCccchHHHHHHHHH---------------
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWS---R---NVIAMSFAPRDSHEAQVQFAL--------------- 144 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~---~---~v~~vdis~~dis~a~i~~a~--------------- 144 (439)
.+..++-..++.. +.+-++.|-.||.|+++.-+.- . ++.+.||++..+.-+..+...
T Consensus 37 sEi~qR~l~~l~~--~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~ 114 (246)
T PF11599_consen 37 SEIFQRALHYLEG--KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRE 114 (246)
T ss_dssp HHHHHHHHCTSSS---S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcC--CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHH
Confidence 4444554455532 3455899999999987765432 2 589999988654333322110
Q ss_pred ---------------------H----c--CCCeEEEEecccc------cCCCCCCccEEEecccc---cccCC----Ch-
Q 013605 145 ---------------------E----R--GVPAVIGVLGTIK------MPYASRAFDMAHCSRCL---IPWGA----ND- 183 (439)
Q Consensus 145 ---------------------e----~--~~~~~~~~~d~~~------lp~~d~sFDlV~~~~~l---~~~~~----d~- 183 (439)
+ . -.+..+...|+.. ++. ....|+|+..... .+|.. ++
T Consensus 115 ~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~-~~~~diViTDlPYG~~t~W~g~~~~~p~ 193 (246)
T PF11599_consen 115 LYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDA-GFTPDIVITDLPYGEMTSWQGEGSGGPV 193 (246)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHT-T---SEEEEE--CCCSSSTTS---HHHH
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhcc-CCCCCEEEecCCCcccccccCCCCCCcH
Confidence 0 0 1234455555433 222 2235888874322 35554 12
Q ss_pred HHHHHHHHHcCCCCeEEEEEe
Q 013605 184 GRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 184 ~~~L~ei~RvLkPGG~liis~ 204 (439)
..+|..+..+|-.++++.+++
T Consensus 194 ~~ml~~l~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 194 AQMLNSLAPVLPERSVVAVSD 214 (246)
T ss_dssp HHHHHHHHCCS-TT-EEEEEE
T ss_pred HHHHHHHHhhCCCCcEEEEec
Confidence 589999999996666666654
No 320
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=57.34 E-value=85 Score=31.60 Aligned_cols=91 Identities=11% Similarity=0.086 Sum_probs=52.1
Q ss_pred CCEEEEECC--CCchHHHHHhhC-CcEEEeCCccchHHHHHHHHH-HcCCCeEEEEe---cc-ccc-CCCCCCccEEEec
Q 013605 103 VRTALDTGC--GVASWGAYLWSR-NVIAMSFAPRDSHEAQVQFAL-ERGVPAVIGVL---GT-IKM-PYASRAFDMAHCS 173 (439)
Q Consensus 103 ~~~VLDIGC--G~G~~~~~La~~-~v~~vdis~~dis~a~i~~a~-e~~~~~~~~~~---d~-~~l-p~~d~sFDlV~~~ 173 (439)
+.+||=.|+ |.|.++..+++. |...+-++. +....+.++ +.|....+... +. +.+ ....+.+|+|+-.
T Consensus 159 g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~---~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~ 235 (348)
T PLN03154 159 GDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAG---SSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDN 235 (348)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEEC
Confidence 458988887 377787777775 543333321 223444554 45554333211 11 001 1112468988753
Q ss_pred ccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 174 RCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 174 ~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
- . ...+..+.+.|++||.+++.+
T Consensus 236 v------G--~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 236 V------G--GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred C------C--HHHHHHHHHHhccCCEEEEEC
Confidence 2 1 347788999999999999865
No 321
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=57.32 E-value=47 Score=32.19 Aligned_cols=90 Identities=23% Similarity=0.168 Sum_probs=50.7
Q ss_pred CCEEEEECCC-CchHHHHHhhC-C---cEEEeCCccchHHHHHHHHHHcCCCeEEEEecc-ccc-C-CCCCCccEEEecc
Q 013605 103 VRTALDTGCG-VASWGAYLWSR-N---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT-IKM-P-YASRAFDMAHCSR 174 (439)
Q Consensus 103 ~~~VLDIGCG-~G~~~~~La~~-~---v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~-~~l-p-~~d~sFDlV~~~~ 174 (439)
+.+||=+|+| .|.++..+++. | +++++.++ ...+.+++.+....+...+. ..+ . .....+|+|+-.-
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~-----~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~ 195 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSP-----DRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFS 195 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH-----HHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECC
Confidence 4478888875 33444555543 4 44554433 45566777665433221111 100 0 1223589887532
Q ss_pred cccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 175 CLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 175 ~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
. ....+.++.+.|+++|.+++.+
T Consensus 196 G-------~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 196 G-------ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred C-------ChHHHHHHHHHhcCCCEEEEec
Confidence 1 1456788899999999999865
No 322
>PTZ00357 methyltransferase; Provisional
Probab=57.23 E-value=59 Score=36.40 Aligned_cols=95 Identities=15% Similarity=0.115 Sum_probs=58.7
Q ss_pred CEEEEECCCCchHHHHHhhC--------CcEEEeCCccchHHHHHHHHHH-c--------CCCeEEEEecccccCCC---
Q 013605 104 RTALDTGCGVASWGAYLWSR--------NVIAMSFAPRDSHEAQVQFALE-R--------GVPAVIGVLGTIKMPYA--- 163 (439)
Q Consensus 104 ~~VLDIGCG~G~~~~~La~~--------~v~~vdis~~dis~a~i~~a~e-~--------~~~~~~~~~d~~~lp~~--- 163 (439)
..|+=+|+|-|-+....++. .+.+++-.+........+.... . +..+.++..|+..+..+
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 36899999999877655443 3677777754332222222111 1 22367777787666432
Q ss_pred --------CCCccEEEecccccccCCCh--HHHHHHHHHcCCC----CeE
Q 013605 164 --------SRAFDMAHCSRCLIPWGAND--GRYMIEVDRVLRP----GGY 199 (439)
Q Consensus 164 --------d~sFDlV~~~~~l~~~~~d~--~~~L~ei~RvLkP----GG~ 199 (439)
-+.+|+|++-. |-.+.++. .+.|.-+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSEL-LGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSEL-LGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhh-hcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 24699999854 32444443 6889999999987 776
No 323
>PLN02740 Alcohol dehydrogenase-like
Probab=56.73 E-value=77 Score=32.29 Aligned_cols=90 Identities=17% Similarity=0.100 Sum_probs=49.9
Q ss_pred CCEEEEECCC-CchHHHHHhhC-C---cEEEeCCccchHHHHHHHHHHcCCCeEEEEec----c-ccc-CCCCCCccEEE
Q 013605 103 VRTALDTGCG-VASWGAYLWSR-N---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLG----T-IKM-PYASRAFDMAH 171 (439)
Q Consensus 103 ~~~VLDIGCG-~G~~~~~La~~-~---v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d----~-~~l-p~~d~sFDlV~ 171 (439)
+.+||=+|+| .|..+..+++. | |++++.+ ....+.+++.|....+...+ . +.+ ....+.+|+|+
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~-----~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvi 273 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDIN-----PEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSF 273 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCC-----hHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEE
Confidence 4588888875 23444445543 4 4455443 34566777766543332111 0 000 11123699887
Q ss_pred ecccccccCCChHHHHHHHHHcCCCC-eEEEEEe
Q 013605 172 CSRCLIPWGANDGRYMIEVDRVLRPG-GYWVLSG 204 (439)
Q Consensus 172 ~~~~l~~~~~d~~~~L~ei~RvLkPG-G~liis~ 204 (439)
-.-. ....+......+++| |.+++.+
T Consensus 274 d~~G-------~~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 274 ECAG-------NVEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred ECCC-------ChHHHHHHHHhhhcCCCEEEEEc
Confidence 6431 135677888889997 9888765
No 324
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=56.17 E-value=57 Score=32.87 Aligned_cols=90 Identities=22% Similarity=0.230 Sum_probs=55.4
Q ss_pred CCEEEEEC--CCCchHHHHHhhC-Cc--EEEeCCccchHHHHHHHHHHcCCCeEEE--Eecc-ccc-CC-CCCCccEEEe
Q 013605 103 VRTALDTG--CGVASWGAYLWSR-NV--IAMSFAPRDSHEAQVQFALERGVPAVIG--VLGT-IKM-PY-ASRAFDMAHC 172 (439)
Q Consensus 103 ~~~VLDIG--CG~G~~~~~La~~-~v--~~vdis~~dis~a~i~~a~e~~~~~~~~--~~d~-~~l-p~-~d~sFDlV~~ 172 (439)
+.+||=.| .|.|.++.+|++. |. +++--++ +..+++++.|.+..+. ..+. +.+ .. ....+|+|+.
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~-----~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D 217 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSS-----EKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLD 217 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCH-----HHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEE
Confidence 44898888 4567888888886 52 2332222 3334677777654443 1111 111 12 2346999987
Q ss_pred cccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 173 SRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 173 ~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
.- ....+.+..+.|+++|.++..+.
T Consensus 218 ~v--------G~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 218 TV--------GGDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred CC--------CHHHHHHHHHHhccCCEEEEEec
Confidence 43 25677889999999999998664
No 325
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=55.95 E-value=66 Score=31.82 Aligned_cols=91 Identities=22% Similarity=0.169 Sum_probs=49.9
Q ss_pred CCEEEEECCC-CchHHHHHhhC-C---cEEEeCCccchHHHHHHHHHHcCCCeEEEEecc--ccc-CC-CCCCccEEEec
Q 013605 103 VRTALDTGCG-VASWGAYLWSR-N---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT--IKM-PY-ASRAFDMAHCS 173 (439)
Q Consensus 103 ~~~VLDIGCG-~G~~~~~La~~-~---v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~--~~l-p~-~d~sFDlV~~~ 173 (439)
+.+||=+|+| .|.++..+++. | +++++.+ +...+.+++.|....+...+. ..+ .. ....+|+|+-.
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~-----~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~ 238 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVDPS-----PERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIEC 238 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC-----HHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEEC
Confidence 4478888864 23344445543 3 4444443 345566666665333221111 011 11 23469998854
Q ss_pred ccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 174 RCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 174 ~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
.. ....+....+.|+++|.+++.+.
T Consensus 239 ~g-------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 239 SG-------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CC-------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 21 13456778899999999997653
No 326
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=54.23 E-value=41 Score=34.63 Aligned_cols=98 Identities=18% Similarity=0.263 Sum_probs=62.3
Q ss_pred CCEEEEECCCCchHHHHHhhC-C---cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCC-CCCccEEEeccccc
Q 013605 103 VRTALDTGCGVASWGAYLWSR-N---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA-SRAFDMAHCSRCLI 177 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~-~---v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~-d~sFDlV~~~~~l~ 177 (439)
..+|||.=+|+|.=+...+.. + ++.-|++|........+.....+.+......|+..+=.. ...||+|=..
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiD---- 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDID---- 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecC----
Confidence 458999999999766655543 2 566677775443333332222244555555565433222 3678977442
Q ss_pred ccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 178 PWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 178 ~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
++. .+..++..+.+.++.||++.++..
T Consensus 129 PFG-SPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 129 PFG-SPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred CCC-CCchHHHHHHHHhhcCCEEEEEec
Confidence 232 457799999999999999999753
No 327
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=54.20 E-value=37 Score=35.23 Aligned_cols=120 Identities=9% Similarity=0.032 Sum_probs=63.5
Q ss_pred CcchHHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC-------CcEEEeCCccchHHHHHHHHHH----cCC-
Q 013605 81 FPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-------NVIAMSFAPRDSHEAQVQFALE----RGV- 148 (439)
Q Consensus 81 f~~g~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~-------~v~~vdis~~dis~a~i~~a~e----~~~- 148 (439)
++.-....+..+.+-+...+. ....|+|.|.|.....++.. |+..++.-. +....+.++-+. -|.
T Consensus 173 YGE~~~~ql~si~dEl~~g~~--D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS-~~a~~~~~~~kk~~k~fGk~ 249 (419)
T KOG3924|consen 173 YGETQLEQLRSIVDELKLGPA--DVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPS-QCAELNKEEFKKLMKHFGKK 249 (419)
T ss_pred hhhhhHHHHHHHHHHhccCCC--CcccCCCcccchhhHHHHHhhccccccceeeecCcH-HHHHHHHHHHHHHHHHhCCC
Confidence 333344444455555544444 48999999999877776653 344343321 232222222221 122
Q ss_pred --CeEEEEeccccc---CCCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 149 --PAVIGVLGTIKM---PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 149 --~~~~~~~d~~~l---p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
......++...- ..-....++|+++.+. +.++...-+.++..-+++|-.++=+.+
T Consensus 250 ~~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~--Fdp~L~lr~~eil~~ck~gtrIiS~~~ 309 (419)
T KOG3924|consen 250 PNKIETIHGSFLDPKRVTEIQTEATVIFVNNVA--FDPELKLRSKEILQKCKDGTRIISSKP 309 (419)
T ss_pred cCceeecccccCCHHHHHHHhhcceEEEEeccc--CCHHHHHhhHHHHhhCCCcceEecccc
Confidence 233333332111 1113456888887753 444445556788899999888875543
No 328
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=54.03 E-value=64 Score=30.72 Aligned_cols=89 Identities=19% Similarity=0.135 Sum_probs=48.5
Q ss_pred CCEEEEECCCC-chHHHHHhhC-C---cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEeccccc
Q 013605 103 VRTALDTGCGV-ASWGAYLWSR-N---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (439)
Q Consensus 103 ~~~VLDIGCG~-G~~~~~La~~-~---v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~ 177 (439)
+.+||=.|+|. |..+..+++. + +++++.++ ...+.+++.+....+.. ...-......+|+|+....
T Consensus 98 g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~-----~~~~~~~~~g~~~~~~~--~~~~~~~~~~~d~vl~~~~-- 168 (277)
T cd08255 98 GERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDA-----ARRELAEALGPADPVAA--DTADEIGGRGADVVIEASG-- 168 (277)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCH-----HHHHHHHHcCCCccccc--cchhhhcCCCCCEEEEccC--
Confidence 44788888753 4455555543 3 44444332 34445666551111111 1100113456898885321
Q ss_pred ccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 178 PWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 178 ~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
....+.+..+.|+++|.++..+.
T Consensus 169 -----~~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 169 -----SPSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred -----ChHHHHHHHHHhcCCcEEEEEec
Confidence 13467888999999999987653
No 329
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=53.78 E-value=47 Score=32.74 Aligned_cols=83 Identities=23% Similarity=0.145 Sum_probs=47.0
Q ss_pred CCEEEEECCC-CchHHHHHhhC-Cc---EEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEeccccc
Q 013605 103 VRTALDTGCG-VASWGAYLWSR-NV---IAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (439)
Q Consensus 103 ~~~VLDIGCG-~G~~~~~La~~-~v---~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~ 177 (439)
+.+||=+||| .|.++..+++. |. .++|..+ ...+.+.... . .+.... ....||+|+-.-.
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~-----~rl~~a~~~~----~--i~~~~~--~~~g~Dvvid~~G-- 209 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNP-----RRRDGATGYE----V--LDPEKD--PRRDYRAIYDASG-- 209 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH-----HHHHhhhhcc----c--cChhhc--cCCCCCEEEECCC--
Confidence 3468888876 45666666654 43 3444432 2333333221 1 111111 2346898886431
Q ss_pred ccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 178 PWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 178 ~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
....+..+.+.|++||.+++.+.
T Consensus 210 -----~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 -----DPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred -----CHHHHHHHHHhhhcCcEEEEEee
Confidence 13467888999999999998763
No 330
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=53.62 E-value=39 Score=34.30 Aligned_cols=91 Identities=14% Similarity=0.135 Sum_probs=56.2
Q ss_pred CCCEEEEECCCCc-hHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccc---cc------CCCCCCc
Q 013605 102 TVRTALDTGCGVA-SWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI---KM------PYASRAF 167 (439)
Q Consensus 102 ~~~~VLDIGCG~G-~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~---~l------p~~d~sF 167 (439)
.+.+||=+|+|.= ..+...++. .|+++|+++ ..++.|++-|........... .+ -+....|
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~-----~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~ 243 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVA-----NRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQP 243 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCH-----HHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCC
Confidence 3459999999954 444444443 477777754 667788887665544332211 11 1233458
Q ss_pred cEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 168 DMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 168 DlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
|+.+...-+ +..++-....+|.||.+++.+
T Consensus 244 d~~~dCsG~-------~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 244 DVTFDCSGA-------EVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred CeEEEccCc-------hHHHHHHHHHhccCCEEEEec
Confidence 887753322 445666788899999988875
No 331
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=53.47 E-value=32 Score=35.61 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=22.4
Q ss_pred CCEEEEECCCCchHHHHHhhC-C--cEEEeCC
Q 013605 103 VRTALDTGCGVASWGAYLWSR-N--VIAMSFA 131 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~-~--v~~vdis 131 (439)
...|+|+|.|.|+++..|.-. | |.++|-+
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegs 185 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGS 185 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCceEEEeccc
Confidence 348999999999999998765 5 5555544
No 332
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=52.34 E-value=22 Score=36.83 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=40.3
Q ss_pred eEEEEecccc-cC-CCCCCccEEEecccccccCCCh--HHHHHHHHHcCCCCeEEEEEe
Q 013605 150 AVIGVLGTIK-MP-YASRAFDMAHCSRCLIPWGAND--GRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 150 ~~~~~~d~~~-lp-~~d~sFDlV~~~~~l~~~~~d~--~~~L~ei~RvLkPGG~liis~ 204 (439)
+.+...++.+ +. .++++||.++.+... .|.++. ...++++.+.++|||.+++-+
T Consensus 277 v~i~t~si~~~L~~~~~~s~~~~vL~D~~-Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 277 VRIHTDSIEEVLRRLPPGSFDRFVLSDHM-DWMDPEQLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred EEEEeccHHHHHHhCCCCCeeEEEecchh-hhCCHHHHHHHHHHHHHHhCCCCEEEEee
Confidence 4555555433 22 568999999998865 666444 688999999999999999964
No 333
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=52.17 E-value=59 Score=32.59 Aligned_cols=88 Identities=15% Similarity=0.077 Sum_probs=49.5
Q ss_pred CCCEEEEECCC-CchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEeccc
Q 013605 102 TVRTALDTGCG-VASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRC 175 (439)
Q Consensus 102 ~~~~VLDIGCG-~G~~~~~La~~-----~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~ 175 (439)
.+.+||=+||| .|.++..++.+ .++++|.++ ...+.+++.+. .... ..+. ....+|+|+-.-.
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~-----~k~~~a~~~~~--~~~~---~~~~-~~~g~d~viD~~G 231 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQ-----EKLDLFSFADE--TYLI---DDIP-EDLAVDHAFECVG 231 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcH-----hHHHHHhhcCc--eeeh---hhhh-hccCCcEEEECCC
Confidence 34589999986 34454555442 366677654 34445544221 1111 1111 1124898885321
Q ss_pred ccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 176 LIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 176 l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
. ......+.+..++|++||.+++.+
T Consensus 232 ~----~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 232 G----RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred C----CccHHHHHHHHHhCcCCcEEEEEe
Confidence 1 012457888999999999999875
No 334
>KOG1393 consensus Hydroxymethylglutaryl-CoA synthase [Lipid transport and metabolism]
Probab=51.43 E-value=8.7 Score=39.48 Aligned_cols=54 Identities=35% Similarity=0.445 Sum_probs=35.1
Q ss_pred CCCCceeeeccCcCccchhhhc-----cCCCce------e----------eeecCCC---------CCCCCccccccccc
Q 013605 349 DSGRYRNIMDMNAGFGGFAAAI-----QSSKLW------V----------MNVVPTL---------ADKNTLGVIYERGL 398 (439)
Q Consensus 349 ~~~~~rnvmdm~a~~ggfaaal-----~~~~~w------v----------mnvvp~~---------~~~~tl~~i~~rgl 398 (439)
+...|--|=-.||-|||-||-+ +.-..| | =|+=|+. +| | -|+|+||||
T Consensus 111 gNtdIEGiDttnACYGGtaALfnavnWiESssWDGr~aivV~gDIAvY~~G~aRpTGGAgAVAmLIgP-n-Api~fergl 188 (462)
T KOG1393|consen 111 GNTDIEGIDTTNACYGGTAALFNAVNWIESSSWDGRYAIVVCGDIAVYAKGNARPTGGAGAVAMLIGP-N-APIIFERGL 188 (462)
T ss_pred CCCccccccccccccccHHHHHHHhhhhhhcccCCceeEEEEeeEEEecCCCCCCCCCcceEEEEEcC-C-CceEecccc
Confidence 3457777777899999987655 334556 0 1222321 12 2 379999999
Q ss_pred cccccc
Q 013605 399 IGIYHD 404 (439)
Q Consensus 399 ig~~hd 404 (439)
-|+|+.
T Consensus 189 r~thM~ 194 (462)
T KOG1393|consen 189 RATHMQ 194 (462)
T ss_pred hhhhhh
Confidence 999974
No 335
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=51.17 E-value=33 Score=34.56 Aligned_cols=60 Identities=8% Similarity=0.178 Sum_probs=37.1
Q ss_pred eEEEEecccccCCC-------CCCccEEEecccccccC----CChHHHHHHHHHcCCCCeEEEEEeCCCCc
Q 013605 150 AVIGVLGTIKMPYA-------SRAFDMAHCSRCLIPWG----ANDGRYMIEVDRVLRPGGYWVLSGPPINW 209 (439)
Q Consensus 150 ~~~~~~d~~~lp~~-------d~sFDlV~~~~~l~~~~----~d~~~~L~ei~RvLkPGG~liis~p~~~~ 209 (439)
+.|.+.|+..+..+ ..+-|+|...+.+..+. ....++|..+..+++||-+++|++.+..+
T Consensus 177 ~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGSY 247 (315)
T PF11312_consen 177 VSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGSY 247 (315)
T ss_pred eeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCCc
Confidence 45556665444322 12456666544443221 12268999999999999999998765543
No 336
>PLN02827 Alcohol dehydrogenase-like
Probab=51.11 E-value=91 Score=31.80 Aligned_cols=90 Identities=17% Similarity=0.072 Sum_probs=49.5
Q ss_pred CCEEEEECCC-CchHHHHHhhC-C---cEEEeCCccchHHHHHHHHHHcCCCeEEEEec----c-ccc-CCCCCCccEEE
Q 013605 103 VRTALDTGCG-VASWGAYLWSR-N---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLG----T-IKM-PYASRAFDMAH 171 (439)
Q Consensus 103 ~~~VLDIGCG-~G~~~~~La~~-~---v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d----~-~~l-p~~d~sFDlV~ 171 (439)
+.+||=.|+| .|.++..+++. | +++++.++ ...+++++.|....+...+ . ..+ ....+.+|+|+
T Consensus 194 g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~-----~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vi 268 (378)
T PLN02827 194 GSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINP-----EKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSF 268 (378)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH-----HHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEE
Confidence 4588888864 23344444443 4 34444433 4556777776543332111 0 001 01123689887
Q ss_pred ecccccccCCChHHHHHHHHHcCCCC-eEEEEEe
Q 013605 172 CSRCLIPWGANDGRYMIEVDRVLRPG-GYWVLSG 204 (439)
Q Consensus 172 ~~~~l~~~~~d~~~~L~ei~RvLkPG-G~liis~ 204 (439)
-.-. . ...+.+..+.|++| |.+++.+
T Consensus 269 d~~G------~-~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 269 ECVG------D-TGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred ECCC------C-hHHHHHHHHhhccCCCEEEEEC
Confidence 5321 1 34677888999999 9998765
No 337
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=50.89 E-value=16 Score=33.62 Aligned_cols=44 Identities=14% Similarity=0.081 Sum_probs=30.5
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhCC--cEEEeCCc
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAP 132 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~--v~~vdis~ 132 (439)
..+++.+.+... ..+..|||.=||+|+.+.+....+ .+++|+++
T Consensus 178 ~~l~~~lI~~~t---~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~ 223 (231)
T PF01555_consen 178 VELIERLIKAST---NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDE 223 (231)
T ss_dssp HHHHHHHHHHHS----TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSH
T ss_pred HHHHHHHHHhhh---ccceeeehhhhccChHHHHHHHcCCeEEEEeCCH
Confidence 556666666653 334599999999999887777664 88888876
No 338
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=50.76 E-value=82 Score=31.07 Aligned_cols=92 Identities=20% Similarity=0.161 Sum_probs=51.2
Q ss_pred CCEEEEECCCC-chHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecc---ccc--CCCCCCccEEEeccc
Q 013605 103 VRTALDTGCGV-ASWGAYLWSR-NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT---IKM--PYASRAFDMAHCSRC 175 (439)
Q Consensus 103 ~~~VLDIGCG~-G~~~~~La~~-~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~---~~l--p~~d~sFDlV~~~~~ 175 (439)
+.+||-.|+|. |..+..+++. |+.++-++.. ....++.++.+....+...+. ..+ ..+...+|+|+....
T Consensus 160 g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s---~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~~g 236 (337)
T cd08261 160 GDTVLVVGAGPIGLGVIQVAKARGARVIVVDID---DERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDATG 236 (337)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEECCC---HHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEECCC
Confidence 34888888763 5666666665 5444333221 334445555553322211110 111 123456999986421
Q ss_pred ccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 176 LIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 176 l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
....+.++.+.|+++|.++..+
T Consensus 237 -------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 237 -------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred -------CHHHHHHHHHHHhcCCEEEEEc
Confidence 1356788999999999988754
No 339
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=50.73 E-value=77 Score=31.27 Aligned_cols=90 Identities=20% Similarity=0.175 Sum_probs=47.9
Q ss_pred CCEEEEECCC-CchHHHHHhhC-C---cEEEeCCccchHHHHHHHHHHcCCCeEEEEecc---ccc--CCCCCCccEEEe
Q 013605 103 VRTALDTGCG-VASWGAYLWSR-N---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT---IKM--PYASRAFDMAHC 172 (439)
Q Consensus 103 ~~~VLDIGCG-~G~~~~~La~~-~---v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~---~~l--p~~d~sFDlV~~ 172 (439)
+.+||-.|+| .|..+..+++. + +.+++.+ ....+.+++.+....+...+. ..+ -.+.+.+|+|+.
T Consensus 168 ~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~-----~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld 242 (347)
T cd05278 168 GSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSN-----PERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIE 242 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC-----HHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEE
Confidence 4578887765 35555555554 4 3334332 233344554443222211110 001 013356998885
Q ss_pred cccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 173 SRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 173 ~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
... ....+.++.+.|+++|.++..+
T Consensus 243 ~~g-------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 243 AVG-------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred ccC-------CHHHHHHHHHHhhcCCEEEEEc
Confidence 321 1357888999999999998764
No 340
>PRK13699 putative methylase; Provisional
Probab=50.18 E-value=33 Score=32.81 Aligned_cols=45 Identities=13% Similarity=0.068 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC--CcEEEeCCcc
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPR 133 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~ 133 (439)
..+++.+.+... ..+..|||.=||+|+.+....+. .++++++++.
T Consensus 150 ~~l~~~~i~~~s---~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~ 196 (227)
T PRK13699 150 VTSLQPLIESFT---HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQ 196 (227)
T ss_pred HHHHHHHHHHhC---CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHH
Confidence 444455554432 23458999999999988776654 5889999874
No 341
>PF07629 DUF1590: Protein of unknown function (DUF1590); InterPro: IPR011481 These hypothetical proteins in Rhodopirellula baltica have a conserved C-terminal region.
Probab=48.57 E-value=9.9 Score=24.11 Aligned_cols=20 Identities=35% Similarity=0.750 Sum_probs=16.5
Q ss_pred cCCCCCCCCCCccccCCCCC
Q 013605 13 RHCPPEEEKLHCLIPAPKGY 32 (439)
Q Consensus 13 r~cp~~~~~~~c~~p~p~~y 32 (439)
-||||++-.+.-+.|.|+.-
T Consensus 5 a~~pppeislna~fptppaa 24 (32)
T PF07629_consen 5 ADCPPPEISLNARFPTPPAA 24 (32)
T ss_pred CCCCCCcceeccccCCChhh
Confidence 58999988888888888753
No 342
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=48.43 E-value=81 Score=31.55 Aligned_cols=91 Identities=13% Similarity=0.153 Sum_probs=49.1
Q ss_pred CCEEEEECCCC-chHHHHHhhC-C--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecc--ccc----C-C-CCCCcc--
Q 013605 103 VRTALDTGCGV-ASWGAYLWSR-N--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT--IKM----P-Y-ASRAFD-- 168 (439)
Q Consensus 103 ~~~VLDIGCG~-G~~~~~La~~-~--v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~--~~l----p-~-~d~sFD-- 168 (439)
+.+||=+|+|. |..+..++.. | +++++.++ ...+++++.+....+...+. ..+ . + ....+|
T Consensus 167 g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~-----~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~ 241 (349)
T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDP-----EKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRST 241 (349)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH-----HHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCC
Confidence 45899999853 4555555554 4 45554433 45566766665433321110 011 0 1 112344
Q ss_pred --EEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 169 --MAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 169 --lV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
+|+-.- -....+..+.+.|++||.+++.+.
T Consensus 242 ~d~v~d~~-------g~~~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 242 GWKIFECS-------GSKPGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred cCEEEECC-------CChHHHHHHHHHHhcCCeEEEECc
Confidence 454211 113467778889999999998764
No 343
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=48.21 E-value=1.4e+02 Score=32.12 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=60.6
Q ss_pred HHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC--------CcEEEeCCccchHHHHHHHHHHcCCC---eEEEEec
Q 013605 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--------NVIAMSFAPRDSHEAQVQFALERGVP---AVIGVLG 156 (439)
Q Consensus 88 ~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~--------~v~~vdis~~dis~a~i~~a~e~~~~---~~~~~~d 156 (439)
.++.+.+++.....+...|.|.-||+|.+....... .+++.+..+.+...+...... ++.. .....++
T Consensus 203 Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l-~~~~~~t~~~~~~d 281 (501)
T TIGR00497 203 ISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMIL-HNIDYANFNIINAD 281 (501)
T ss_pred HHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHH-cCCCccccCcccCC
Confidence 334444544322223357999999999988654321 245555555433333222211 2221 1222233
Q ss_pred cccc-CC-CCCCccEEEecccccc-c-----------------------CCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 157 TIKM-PY-ASRAFDMAHCSRCLIP-W-----------------------GANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 157 ~~~l-p~-~d~sFDlV~~~~~l~~-~-----------------------~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
...- .+ ....||.|+++..+-. | ....-.++..+..+|++||...+..+
T Consensus 282 tl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~ 356 (501)
T TIGR00497 282 TLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCF 356 (501)
T ss_pred cCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEec
Confidence 3221 12 2356888887543211 1 01124678888999999998776654
No 344
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=47.96 E-value=50 Score=32.49 Aligned_cols=100 Identities=13% Similarity=0.018 Sum_probs=46.1
Q ss_pred CCCCCCEEEEECCCCc-------hHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEE
Q 013605 99 KNGTVRTALDTGCGVA-------SWGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAH 171 (439)
Q Consensus 99 ~~~~~~~VLDIGCG~G-------~~~~~La~~~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~ 171 (439)
..+...+||-+|+|+- ...+.++..+.+.+|.+-.+. ... ......+|...+. ++..||+|+
T Consensus 58 aVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~-------vSD---a~~~~~~Dc~t~~-~~~k~DlIi 126 (299)
T PF06460_consen 58 AVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDY-------VSD---ADQSIVGDCRTYM-PPDKFDLII 126 (299)
T ss_dssp ---TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS---------B-S---SSEEEES-GGGEE-ESS-EEEEE
T ss_pred eeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhh-------ccc---cCCceeccccccC-CCCcccEEE
Confidence 3456679999998854 244555556766666633221 111 1233445554444 356799999
Q ss_pred ecccc---cc-----cCCCh--HHHHHHHHHcCCCCeEEEEEeCCCCc
Q 013605 172 CSRCL---IP-----WGAND--GRYMIEVDRVLRPGGYWVLSGPPINW 209 (439)
Q Consensus 172 ~~~~l---~~-----~~~d~--~~~L~ei~RvLkPGG~liis~p~~~~ 209 (439)
+..-- .+ ...+. .-+..-+...|+-||.+.+-.....|
T Consensus 127 SDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw 174 (299)
T PF06460_consen 127 SDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSW 174 (299)
T ss_dssp E----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS-
T ss_pred EecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccc
Confidence 86420 00 11111 23445566778999999997765533
No 345
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=47.78 E-value=1.4e+02 Score=29.46 Aligned_cols=90 Identities=13% Similarity=0.132 Sum_probs=49.7
Q ss_pred CEEEEECC--CCchHHHHHhhC-Cc-EEEeCCccchHHHHHHHHHH-cCCCeEEEEecc---ccc-CCCCCCccEEEecc
Q 013605 104 RTALDTGC--GVASWGAYLWSR-NV-IAMSFAPRDSHEAQVQFALE-RGVPAVIGVLGT---IKM-PYASRAFDMAHCSR 174 (439)
Q Consensus 104 ~~VLDIGC--G~G~~~~~La~~-~v-~~vdis~~dis~a~i~~a~e-~~~~~~~~~~d~---~~l-p~~d~sFDlV~~~~ 174 (439)
.+||=.|+ |.|..+..+++. |. .++-++. ++...+++++ .|....+...+. ..+ ....+.+|+|+...
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~---s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~ 232 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG---SDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNV 232 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECC
Confidence 58888885 467777777764 54 3333322 2234445444 554433321110 000 11224699998532
Q ss_pred cccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 175 CLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 175 ~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
. ...+.++.+.|+++|.++..+
T Consensus 233 g--------~~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 233 G--------GEISDTVISQMNENSHIILCG 254 (345)
T ss_pred C--------cHHHHHHHHHhccCCEEEEEe
Confidence 1 124578899999999999754
No 346
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=46.43 E-value=1.3e+02 Score=30.48 Aligned_cols=90 Identities=16% Similarity=0.085 Sum_probs=50.2
Q ss_pred CCEEEEECCC-CchHHHHHhhC-C---cEEEeCCccchHHHHHHHHHHcCCCeEEEEec----c-ccc-CCCCCCccEEE
Q 013605 103 VRTALDTGCG-VASWGAYLWSR-N---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLG----T-IKM-PYASRAFDMAH 171 (439)
Q Consensus 103 ~~~VLDIGCG-~G~~~~~La~~-~---v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d----~-~~l-p~~d~sFDlV~ 171 (439)
+.+||=+|+| .|.++..+++. | |++++.+ ....+++++.|....+...+ . ..+ ....+.+|+|+
T Consensus 186 g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~-----~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vi 260 (368)
T TIGR02818 186 GDTVAVFGLGGIGLSVIQGARMAKASRIIAIDIN-----PAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSF 260 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC-----HHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEE
Confidence 4488888875 34455555553 4 4445443 34566777766543332111 0 001 01123589887
Q ss_pred ecccccccCCChHHHHHHHHHcCCCC-eEEEEEe
Q 013605 172 CSRCLIPWGANDGRYMIEVDRVLRPG-GYWVLSG 204 (439)
Q Consensus 172 ~~~~l~~~~~d~~~~L~ei~RvLkPG-G~liis~ 204 (439)
-.-. . ...+.+..+.+++| |.+++.+
T Consensus 261 d~~G------~-~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 261 ECIG------N-VNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred ECCC------C-HHHHHHHHHHhhcCCCeEEEEe
Confidence 5321 1 34678888999986 9888765
No 347
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=46.03 E-value=1.6e+02 Score=29.04 Aligned_cols=92 Identities=13% Similarity=0.103 Sum_probs=51.8
Q ss_pred CCCEEEEECC--CCchHHHHHhhC-CcEEEeCCccchHHHHHHHHHH-cCCCeEEEEe---cc-ccc-CCCCCCccEEEe
Q 013605 102 TVRTALDTGC--GVASWGAYLWSR-NVIAMSFAPRDSHEAQVQFALE-RGVPAVIGVL---GT-IKM-PYASRAFDMAHC 172 (439)
Q Consensus 102 ~~~~VLDIGC--G~G~~~~~La~~-~v~~vdis~~dis~a~i~~a~e-~~~~~~~~~~---d~-~~l-p~~d~sFDlV~~ 172 (439)
.+.+||=.|+ |.|.++..+++. |+..+-++. +....+++++ .|....+... +. +.+ ....+.+|+|+-
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~---~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d 227 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAG---SDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFD 227 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEE
Confidence 3458888886 466777777765 544333322 1244455555 5543333211 11 000 111246898875
Q ss_pred cccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 173 SRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 173 ~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
.. . ...+.+..+.|+++|.++..+
T Consensus 228 ~~-------g-~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 228 NV-------G-GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred CC-------C-HHHHHHHHHHhccCcEEEEec
Confidence 32 1 356788999999999999764
No 348
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=45.66 E-value=64 Score=34.42 Aligned_cols=103 Identities=13% Similarity=0.102 Sum_probs=63.0
Q ss_pred CCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecc----cccC---CCCCCccEEE
Q 013605 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT----IKMP---YASRAFDMAH 171 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~----~~lp---~~d~sFDlV~ 171 (439)
...+|-+|-|.|.+...+... .++++.++|.++..+...+.........+...|. .++- -.+..||++.
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~ 375 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLM 375 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEE
Confidence 446899999999888877654 5899999998776665544443322222222221 1111 2456788887
Q ss_pred eccc---ccccCCCh-----HHHHHHHHHcCCCCeEEEEEeC
Q 013605 172 CSRC---LIPWGAND-----GRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 172 ~~~~---l~~~~~d~-----~~~L~ei~RvLkPGG~liis~p 205 (439)
..-- .+...-.+ ..+|..+..+|.|.|.|++..-
T Consensus 376 ~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv 417 (482)
T KOG2352|consen 376 VDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLV 417 (482)
T ss_pred EECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEe
Confidence 4210 11111111 4788899999999999998653
No 349
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=44.94 E-value=69 Score=32.75 Aligned_cols=91 Identities=15% Similarity=0.118 Sum_probs=48.3
Q ss_pred CCEEEEECCC-CchHHHHHhhC-C--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEecccccc
Q 013605 103 VRTALDTGCG-VASWGAYLWSR-N--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (439)
Q Consensus 103 ~~~VLDIGCG-~G~~~~~La~~-~--v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~ 178 (439)
+.+||=.|+| .|..+..+++. | +++++.++ +...+++++.|....+...+...+.-..+.+|+|+-.-
T Consensus 179 g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~----~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~---- 250 (375)
T PLN02178 179 GKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS----EKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTV---- 250 (375)
T ss_pred CCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh----HHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECC----
Confidence 4578888875 34455555554 4 45555432 12234555555533321111111100012488887532
Q ss_pred cCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 179 WGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 179 ~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
.....+.+..+.|++||.++..+
T Consensus 251 ---G~~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 251 ---SAEHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred ---CcHHHHHHHHHhhcCCCEEEEEc
Confidence 11346788889999999998765
No 350
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=44.86 E-value=1.8e+02 Score=28.23 Aligned_cols=86 Identities=17% Similarity=0.156 Sum_probs=47.3
Q ss_pred CCEEEEECCCCchHHHHH---hhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEecccccc
Q 013605 103 VRTALDTGCGVASWGAYL---WSR-NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~L---a~~-~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~ 178 (439)
+.+||=.|+ |.++..+ ++. |+..+-++. +....+++++.+....+. .... ...+.+|+|+...
T Consensus 156 g~~vlV~g~--g~vg~~~~q~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~~~---~~~~-~~~~~~d~vid~~---- 222 (319)
T cd08242 156 GDKVAVLGD--GKLGLLIAQVLALTGPDVVLVGR---HSEKLALARRLGVETVLP---DEAE-SEGGGFDVVVEAT---- 222 (319)
T ss_pred CCEEEEECC--CHHHHHHHHHHHHcCCeEEEEcC---CHHHHHHHHHcCCcEEeC---cccc-ccCCCCCEEEECC----
Confidence 347887775 4555444 332 543332322 234555666655433221 1111 2345699988642
Q ss_pred cCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 179 WGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 179 ~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
.....+..+.+.|+++|.++...
T Consensus 223 ---g~~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 223 ---GSPSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred ---CChHHHHHHHHHhhcCCEEEEEc
Confidence 11346788889999999999743
No 351
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=44.82 E-value=1.1e+02 Score=30.36 Aligned_cols=90 Identities=19% Similarity=0.186 Sum_probs=49.7
Q ss_pred CCEEEEECCC-CchHHHHHhhC-C---cEEEeCCccchHHHHHHHHHHcCCCeEEEEecc---ccc-C-CCCCCccEEEe
Q 013605 103 VRTALDTGCG-VASWGAYLWSR-N---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT---IKM-P-YASRAFDMAHC 172 (439)
Q Consensus 103 ~~~VLDIGCG-~G~~~~~La~~-~---v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~---~~l-p-~~d~sFDlV~~ 172 (439)
+.+||=.|+| .|..+..+++. | +++++.++ ...+.+++.+....+...+. ..+ . .....+|+|+.
T Consensus 167 g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~-----~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld 241 (351)
T cd08285 167 GDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRP-----NRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVII 241 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH-----HHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEEE
Confidence 4478888865 34455555554 4 44444432 34456666664332211110 000 1 12346999885
Q ss_pred cccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 173 SRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 173 ~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
... ....+.++.+.|+++|.++..+
T Consensus 242 ~~g-------~~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 242 AGG-------GQDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred CCC-------CHHHHHHHHHHhhcCCEEEEec
Confidence 321 1357889999999999998754
No 352
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=44.71 E-value=1.6e+02 Score=28.64 Aligned_cols=91 Identities=18% Similarity=0.134 Sum_probs=51.4
Q ss_pred CCEEEEECC--CCchHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecc---ccc-CCCCCCccEEEeccc
Q 013605 103 VRTALDTGC--GVASWGAYLWSR-NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT---IKM-PYASRAFDMAHCSRC 175 (439)
Q Consensus 103 ~~~VLDIGC--G~G~~~~~La~~-~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~---~~l-p~~d~sFDlV~~~~~ 175 (439)
+.+||=.|. |.|..+..++.. |+..+-++. +....+++++.|....+...+. ..+ ....+.+|+|+-..
T Consensus 144 g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~---s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~- 219 (329)
T cd08294 144 GETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAG---SDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNV- 219 (329)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEECC-
Confidence 447887773 466677777665 543333321 2234556666665433321111 001 11234689887532
Q ss_pred ccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 176 LIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 176 l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
. ...+.+..+.|+++|.++..+
T Consensus 220 ------g-~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 220 ------G-GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred ------C-HHHHHHHHHhhccCCEEEEEc
Confidence 1 356788999999999998764
No 353
>PRK11524 putative methyltransferase; Provisional
Probab=44.45 E-value=32 Score=33.88 Aligned_cols=45 Identities=16% Similarity=0.199 Sum_probs=31.7
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhh--CCcEEEeCCcc
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWS--RNVIAMSFAPR 133 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~--~~v~~vdis~~ 133 (439)
..+++.+.+.. ...+..|||-=||+|+.+....+ +..+++|+++.
T Consensus 195 ~~L~erlI~~~---S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~ 241 (284)
T PRK11524 195 EALLKRIILAS---SNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSE 241 (284)
T ss_pred HHHHHHHHHHh---CCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHH
Confidence 45555555554 33455999999999987766555 46999999774
No 354
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=43.91 E-value=50 Score=32.93 Aligned_cols=66 Identities=23% Similarity=0.294 Sum_probs=43.3
Q ss_pred CCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeCCCCccccccccCCChHHHHHHHHHHHHHHHhcceeee
Q 013605 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKK 242 (439)
Q Consensus 164 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p~~~~~~~~~~~~~~~e~l~~~~~~l~~l~~~l~W~~~ 242 (439)
.+-||+|+.+....|... .++.++++|+|.+++.+... .- .-..+.+..-.+.+.++++...|+..
T Consensus 220 ~~~Fd~ifvs~s~vh~L~------p~l~~~~a~~A~LvvEtaKf--mv-----dLrKEq~~~F~~kv~eLA~~aG~~p~ 285 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLK------PELFQALAPDAVLVVETAKF--MV-----DLRKEQLQEFVKKVKELAKAAGFKPV 285 (289)
T ss_pred cCCCCEEEEhhhhHhhcc------hHHHHHhCCCCEEEEEcchh--he-----eCCHHHHHHHHHHHHHHHHHCCCccc
Confidence 356999997665545543 24888999999999986411 11 12344555556778888888777654
No 355
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=43.89 E-value=16 Score=36.55 Aligned_cols=119 Identities=18% Similarity=0.136 Sum_probs=69.9
Q ss_pred eeecCCCCCCCcchHHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHH-HHhhCC---cEEEeCCccchHHHHHHHHHHc
Q 013605 71 VFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGA-YLWSRN---VIAMSFAPRDSHEAQVQFALER 146 (439)
Q Consensus 71 ~~~fp~~~~~f~~g~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~-~La~~~---v~~vdis~~dis~a~i~~a~e~ 146 (439)
.+.|..-.++|..|-..-..++..+.- .+..|.|+=+|.|+|+. .+...| |.+++..|. .-++.++.+...
T Consensus 167 ~~~~d~t~~MFS~GN~~EK~Rv~~~sc----~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~-svEaLrR~~~~N 241 (351)
T KOG1227|consen 167 TQIWDPTKTMFSRGNIKEKKRVLNTSC----DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPW-SVEALRRNAEAN 241 (351)
T ss_pred EEEechhhhhhhcCcHHHHHHhhhccc----ccchhhhhhcccceEEeehhhccCccEEEEEecCHH-HHHHHHHHHHhc
Confidence 455666667777776444344444432 22489999999999998 666654 899999984 445555555554
Q ss_pred CCCeEE-EEecccccCCCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeE
Q 013605 147 GVPAVI-GVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGY 199 (439)
Q Consensus 147 ~~~~~~-~~~d~~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~ 199 (439)
++.... ..-...+.+-++...|-|.... ++.. +.-.--+..+|||.|-
T Consensus 242 ~V~~r~~i~~gd~R~~~~~~~AdrVnLGL--lPSs---e~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 242 NVMDRCRITEGDNRNPKPRLRADRVNLGL--LPSS---EQGWPTAIKALKPEGG 290 (351)
T ss_pred chHHHHHhhhccccccCccccchheeecc--cccc---ccchHHHHHHhhhcCC
Confidence 432111 1112344455677788877643 2222 3334445667777544
No 356
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=43.78 E-value=93 Score=30.33 Aligned_cols=53 Identities=11% Similarity=0.018 Sum_probs=30.8
Q ss_pred CeEEEEecc-cccC-CCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 149 PAVIGVLGT-IKMP-YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 149 ~~~~~~~d~-~~lp-~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
.+.+..+.. +.+| .+...+-+++.-. .+.+.....|..+...|.|||++++-+
T Consensus 158 ~v~~vkG~F~dTLp~~p~~~IAll~lD~---DlYesT~~aLe~lyprl~~GGiIi~DD 212 (248)
T PF05711_consen 158 NVRFVKGWFPDTLPDAPIERIALLHLDC---DLYESTKDALEFLYPRLSPGGIIIFDD 212 (248)
T ss_dssp TEEEEES-HHHHCCC-TT--EEEEEE------SHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred cEEEECCcchhhhccCCCccEEEEEEec---cchHHHHHHHHHHHhhcCCCeEEEEeC
Confidence 466766665 4455 2344444444322 222223688999999999999999875
No 357
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=43.50 E-value=1.8e+02 Score=29.38 Aligned_cols=90 Identities=16% Similarity=0.110 Sum_probs=49.6
Q ss_pred CCEEEEECCC-CchHHHHHhhC-C---cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccc-cc-----CCCCCCccEEE
Q 013605 103 VRTALDTGCG-VASWGAYLWSR-N---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KM-----PYASRAFDMAH 171 (439)
Q Consensus 103 ~~~VLDIGCG-~G~~~~~La~~-~---v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~-~l-----p~~d~sFDlV~ 171 (439)
+.+||=+|+| .|.++..+++. | +++++.++ ...+++++.+....+...+.. .+ ....+.+|+|+
T Consensus 187 g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~-----~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vi 261 (368)
T cd08300 187 GSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINP-----DKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTF 261 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH-----HHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEE
Confidence 4478888864 33444455543 4 44555433 445566666654333211110 00 11223689887
Q ss_pred ecccccccCCChHHHHHHHHHcCCCC-eEEEEEe
Q 013605 172 CSRCLIPWGANDGRYMIEVDRVLRPG-GYWVLSG 204 (439)
Q Consensus 172 ~~~~l~~~~~d~~~~L~ei~RvLkPG-G~liis~ 204 (439)
-.-. ....+.+..+.|+++ |.++..+
T Consensus 262 d~~g-------~~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 262 ECIG-------NVKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred ECCC-------ChHHHHHHHHhhccCCCeEEEEc
Confidence 6321 134778888999997 9888765
No 358
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=43.21 E-value=1.1e+02 Score=30.49 Aligned_cols=91 Identities=11% Similarity=0.096 Sum_probs=48.0
Q ss_pred CCEEEEECCC-CchHHHHHhhC-Cc---EEEeCCccchHHHHHHHHHHcCCCeEEEEecc--ccc--CCCCCCcc-EEEe
Q 013605 103 VRTALDTGCG-VASWGAYLWSR-NV---IAMSFAPRDSHEAQVQFALERGVPAVIGVLGT--IKM--PYASRAFD-MAHC 172 (439)
Q Consensus 103 ~~~VLDIGCG-~G~~~~~La~~-~v---~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~--~~l--p~~d~sFD-lV~~ 172 (439)
+.+||=.|+| .|..+..+++. |. .+++.++ ...+.+++.+....+...+. ..+ ......+| +|+-
T Consensus 161 g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~-----~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d 235 (347)
T PRK10309 161 GKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINS-----EKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILE 235 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH-----HHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEE
Confidence 4588888875 23344444543 43 4444433 34455666554322211110 000 01233577 5553
Q ss_pred cccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 173 SRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 173 ~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
.- .. ...+.+..+.|++||.+++.+.
T Consensus 236 ~~------G~-~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 236 TA------GV-PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred CC------CC-HHHHHHHHHHhhcCCEEEEEcc
Confidence 21 11 4578889999999999998763
No 359
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=42.94 E-value=50 Score=26.93 Aligned_cols=52 Identities=10% Similarity=0.088 Sum_probs=28.5
Q ss_pred ECCCCchHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEecc
Q 013605 109 TGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSR 174 (439)
Q Consensus 109 IGCG~G~~~~~La~~~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~ 174 (439)
+-||+|.-+..++ .....+...++|.++.+...+...++-....+|+|++..
T Consensus 7 vvCgsG~~TS~m~--------------~~ki~~~l~~~gi~~~v~~~~~~e~~~~~~~~D~iv~t~ 58 (94)
T PRK10310 7 VACGGAVATSTMA--------------AEEIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTA 58 (94)
T ss_pred EECCCchhHHHHH--------------HHHHHHHHHHCCCeEEEEEecHHHHhhhcCCCCEEEECC
Confidence 4577776554432 223334556667766666555544432224578887764
No 360
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=42.63 E-value=83 Score=34.61 Aligned_cols=57 Identities=16% Similarity=0.281 Sum_probs=40.9
Q ss_pred CCEEEEECCCCchHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEecc
Q 013605 103 VRTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSR 174 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~ 174 (439)
..+|| +-||+|--+..+ ......+..+++|.++...+.+..+.+-....+|+|+++.
T Consensus 506 ~mKIL-vaCGsGiGTStm--------------va~kIkk~Lke~GI~veV~~~~Vsev~s~~~~aDIIVtt~ 562 (602)
T PRK09548 506 PVRIL-AVCGQGQGSSMM--------------MKMKIKKYLDKRGIPIIMDSCAVNDYKGKLETIDIIVCSK 562 (602)
T ss_pred ccEEE-EECCCCchHHHH--------------HHHHHHHHHHHcCCCeEEEEechHhCcccCCCCCEEEEcc
Confidence 34666 667877555443 3344456778889998888888888876667799999976
No 361
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=42.53 E-value=22 Score=35.83 Aligned_cols=78 Identities=13% Similarity=0.094 Sum_probs=44.0
Q ss_pred HHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcC----CCeEEEEecccc
Q 013605 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERG----VPAVIGVLGTIK 159 (439)
Q Consensus 88 ~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~a~i~~a~e~~----~~~~~~~~d~~~ 159 (439)
+++++.+.+...++ ..++|.=-|.|..+..+++. .++++|-++ .+++.|.++. ....+...+...
T Consensus 8 ll~Evl~~L~~~~~--g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~-----~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 8 LLKEVLEALNPKPG--GIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDP-----EALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp THHHHHHHHT--TT---EEEETT-TTSHHHHHHHHT-TT-EEEEEES-H-----HHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred cHHHHHHhhCcCCC--ceEEeecCCcHHHHHHHHHhCCCCeEEEecCCH-----HHHHHHHHHHhhccceEEEEeccHHH
Confidence 45566666654333 38999999999999999986 378888866 4444555442 234445444433
Q ss_pred cC-----C-CCCCccEEEe
Q 013605 160 MP-----Y-ASRAFDMAHC 172 (439)
Q Consensus 160 lp-----~-~d~sFDlV~~ 172 (439)
+. . .-..+|.|+.
T Consensus 81 l~~~l~~~~~~~~~dgiL~ 99 (310)
T PF01795_consen 81 LDEYLKELNGINKVDGILF 99 (310)
T ss_dssp HHHHHHHTTTTS-EEEEEE
T ss_pred HHHHHHHccCCCccCEEEE
Confidence 32 2 2345666664
No 362
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=42.12 E-value=30 Score=35.43 Aligned_cols=72 Identities=15% Similarity=0.069 Sum_probs=44.7
Q ss_pred CCEEEEECCCCchHHHHHhhCC--cEEEeCCccchHH---HH--H-HHHHHcCCC---eEEEEecccccCCC-CCCccEE
Q 013605 103 VRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHE---AQ--V-QFALERGVP---AVIGVLGTIKMPYA-SRAFDMA 170 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~~--v~~vdis~~dis~---a~--i-~~a~e~~~~---~~~~~~d~~~lp~~-d~sFDlV 170 (439)
+..|+|-=.|||++....+.-| |.|.||+-.+++. .. + ..-++.|.. ..+..+|...-|+- ...||.|
T Consensus 209 GdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fDaI 288 (421)
T KOG2671|consen 209 GDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKFDAI 288 (421)
T ss_pred CCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcceeeEE
Confidence 4489999999999988777766 7788886655441 10 1 111222322 23345565555543 5579999
Q ss_pred Eecc
Q 013605 171 HCSR 174 (439)
Q Consensus 171 ~~~~ 174 (439)
+|..
T Consensus 289 vcDP 292 (421)
T KOG2671|consen 289 VCDP 292 (421)
T ss_pred EeCC
Confidence 9965
No 363
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=41.64 E-value=40 Score=28.01 Aligned_cols=67 Identities=16% Similarity=0.019 Sum_probs=47.7
Q ss_pred chHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 134 DSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 134 dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
.+.+...+.++++|++..+.......++-....+|+|+... ...-.+.++...+.+-|.-+...++.
T Consensus 15 ~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~P-------Qv~~~~~~i~~~~~~~~ipv~~I~~~ 81 (99)
T cd05565 15 LLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAP-------QMASYYDELKKDTDRLGIKLVTTTGK 81 (99)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcC-------hHHHHHHHHHHHhhhcCCCEEEeCHH
Confidence 34456677888999998887777766665556689887754 33557788888888888766665533
No 364
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=41.34 E-value=1.4e+02 Score=29.53 Aligned_cols=92 Identities=21% Similarity=0.177 Sum_probs=48.1
Q ss_pred CCEEEEECCCC-chHHHHHhhC-CcE-EEeCCccchHHHHHHHHHHcCCCeEEEEeccc------cc--CCCCCCccEEE
Q 013605 103 VRTALDTGCGV-ASWGAYLWSR-NVI-AMSFAPRDSHEAQVQFALERGVPAVIGVLGTI------KM--PYASRAFDMAH 171 (439)
Q Consensus 103 ~~~VLDIGCG~-G~~~~~La~~-~v~-~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~------~l--p~~d~sFDlV~ 171 (439)
+.+||=.|+|. |..+..+++. |+. .+-+... +...+++++.+....+...+.. .+ ......||+|+
T Consensus 163 g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~---~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d~vl 239 (343)
T cd05285 163 GDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDID---PSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPDVVI 239 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCC---HHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCCCEEE
Confidence 34777777653 4555556654 432 2222211 2333444444443322211100 01 12345599998
Q ss_pred ecccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 172 CSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 172 ~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
-... ....+.++.+.|+++|.++..+
T Consensus 240 d~~g-------~~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 240 ECTG-------AESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred ECCC-------CHHHHHHHHHHhhcCCEEEEEc
Confidence 6421 1336788999999999998765
No 365
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=41.25 E-value=2.3e+02 Score=27.59 Aligned_cols=86 Identities=19% Similarity=0.152 Sum_probs=45.2
Q ss_pred CEEEEECCC-CchHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEecccccccCC
Q 013605 104 RTALDTGCG-VASWGAYLWSR-NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGA 181 (439)
Q Consensus 104 ~~VLDIGCG-~G~~~~~La~~-~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~~~ 181 (439)
.+||=.||| .|..+..+++. ++..+-+... ....+.+++.+....+ +.... +.+.+|+++....
T Consensus 169 ~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~---~~~~~--~~~~vD~vi~~~~------ 234 (329)
T cd08298 169 QRLGLYGFGASAHLALQIARYQGAEVFAFTRS---GEHQELARELGADWAG---DSDDL--PPEPLDAAIIFAP------ 234 (329)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEcCC---hHHHHHHHHhCCcEEe---ccCcc--CCCcccEEEEcCC------
Confidence 366667764 22233333333 5443333222 2344555555542222 11111 2346888764311
Q ss_pred ChHHHHHHHHHcCCCCeEEEEEe
Q 013605 182 NDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 182 d~~~~L~ei~RvLkPGG~liis~ 204 (439)
....+.++.+.|+++|.++..+
T Consensus 235 -~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 235 -VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred -cHHHHHHHHHHhhcCCEEEEEc
Confidence 1357899999999999999764
No 366
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=41.06 E-value=1.9e+02 Score=27.97 Aligned_cols=47 Identities=11% Similarity=0.088 Sum_probs=31.7
Q ss_pred HHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhCC---cEEEeCCccch
Q 013605 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDS 135 (439)
Q Consensus 87 ~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~~---v~~vdis~~di 135 (439)
.+.+.|++..... ...-|.+||.|.|..++.+++.+ ...+++++.-+
T Consensus 37 ~lT~KIvK~A~~~--~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFi 86 (326)
T KOG0821|consen 37 RLTDKIVKKAGNL--TNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFI 86 (326)
T ss_pred HHHHHHHHhcccc--ccceeEEecCCCCchhHHHHhcchhheeeeeeccccC
Confidence 3445555554322 23479999999999999999875 55666665543
No 367
>PRK06701 short chain dehydrogenase; Provisional
Probab=40.95 E-value=1.9e+02 Score=28.18 Aligned_cols=103 Identities=11% Similarity=0.036 Sum_probs=50.4
Q ss_pred CCEEEEECCCCc---hHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccC-----CC-----CCCc
Q 013605 103 VRTALDTGCGVA---SWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP-----YA-----SRAF 167 (439)
Q Consensus 103 ~~~VLDIGCG~G---~~~~~La~~~--v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp-----~~-----d~sF 167 (439)
++++|=.|++.| .++..|+++| |+.++.+.....+...+.....+..+.+..+|+.+.. +. -+.+
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~i 125 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGRL 125 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 347999996554 3445566666 4555554322222222222333445556666653221 11 1357
Q ss_pred cEEEecccccc----cCC-Ch--------------HHHHHHHHHcCCCCeEEEEEeC
Q 013605 168 DMAHCSRCLIP----WGA-ND--------------GRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 168 DlV~~~~~l~~----~~~-d~--------------~~~L~ei~RvLkPGG~liis~p 205 (439)
|+|+.+..... +.+ +. -.+++.+.+.++++|.+++.+.
T Consensus 126 D~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 126 DILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred CEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 88875432211 110 00 1344556666677788777553
No 368
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=40.79 E-value=1.9e+02 Score=29.16 Aligned_cols=91 Identities=20% Similarity=0.132 Sum_probs=48.2
Q ss_pred CCEEEEECCC-CchHHHHHhhC-C---cEEEeCCccchHHHHHHHHHHcCCCeEEEEecc-----ccc-CCCCCCccEEE
Q 013605 103 VRTALDTGCG-VASWGAYLWSR-N---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT-----IKM-PYASRAFDMAH 171 (439)
Q Consensus 103 ~~~VLDIGCG-~G~~~~~La~~-~---v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~-----~~l-p~~d~sFDlV~ 171 (439)
+.+||=+|+| .|..+..+++. | +++++.+ ....+++++.+....+...+. ..+ ....+.+|+|+
T Consensus 185 g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~-----~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vi 259 (365)
T cd08277 185 GSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDIN-----EDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYSF 259 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEEE
Confidence 3478878864 23344444543 4 3444443 345556666665322211110 000 01124689888
Q ss_pred ecccccccCCChHHHHHHHHHcCCCC-eEEEEEeC
Q 013605 172 CSRCLIPWGANDGRYMIEVDRVLRPG-GYWVLSGP 205 (439)
Q Consensus 172 ~~~~l~~~~~d~~~~L~ei~RvLkPG-G~liis~p 205 (439)
-... . ...+.+..+.|+++ |.+++.+.
T Consensus 260 d~~g------~-~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 260 ECTG------N-ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred ECCC------C-hHHHHHHHHhcccCCCEEEEEcC
Confidence 5321 1 35678888999886 99887653
No 369
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=39.84 E-value=1.4e+02 Score=29.34 Aligned_cols=92 Identities=18% Similarity=0.186 Sum_probs=48.5
Q ss_pred CCEEEEECCCC-chHHHHHhhC-CcE-EEeCCccchHHHHHHHHHHcCCCeEEEEec--cccc-CC-CCCCccEEEeccc
Q 013605 103 VRTALDTGCGV-ASWGAYLWSR-NVI-AMSFAPRDSHEAQVQFALERGVPAVIGVLG--TIKM-PY-ASRAFDMAHCSRC 175 (439)
Q Consensus 103 ~~~VLDIGCG~-G~~~~~La~~-~v~-~vdis~~dis~a~i~~a~e~~~~~~~~~~d--~~~l-p~-~d~sFDlV~~~~~ 175 (439)
+.+||-.|+|. |..+..+++. |+. .+-++.. ....+...+.+....+...+ ...+ .. +...||+|+...
T Consensus 160 ~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~---~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~~- 235 (343)
T cd08236 160 GDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDID---DEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEAA- 235 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC---HHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEECC-
Confidence 34788888654 5555555554 432 3333222 23334444445422221110 0111 11 234599998642
Q ss_pred ccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 176 LIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 176 l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
.....+..+.+.|+++|.++..+
T Consensus 236 ------g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 236 ------GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred ------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 12457788999999999988765
No 370
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=39.76 E-value=48 Score=32.52 Aligned_cols=28 Identities=11% Similarity=0.207 Sum_probs=21.9
Q ss_pred CEEEEECCCCchHHHHHhhC---------CcEEEeCC
Q 013605 104 RTALDTGCGVASWGAYLWSR---------NVIAMSFA 131 (439)
Q Consensus 104 ~~VLDIGCG~G~~~~~La~~---------~v~~vdis 131 (439)
..++|+|||.|.++.+++.. .++.+|-.
T Consensus 20 ~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~ 56 (259)
T PF05206_consen 20 SCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA 56 (259)
T ss_pred CEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence 48999999999999888763 35666663
No 371
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=39.61 E-value=14 Score=32.04 Aligned_cols=53 Identities=15% Similarity=0.156 Sum_probs=30.7
Q ss_pred eEEEEeccc-ccCCCCCCccEEEecccccccC-CCh--HHHHHHHHHcCCCCeEEEEE
Q 013605 150 AVIGVLGTI-KMPYASRAFDMAHCSRCLIPWG-AND--GRYMIEVDRVLRPGGYWVLS 203 (439)
Q Consensus 150 ~~~~~~d~~-~lp~~d~sFDlV~~~~~l~~~~-~d~--~~~L~ei~RvLkPGG~liis 203 (439)
..+..+|+. .++--+..||+|+... +.+-. ++. ..+++++.++++|||.+.-.
T Consensus 33 L~L~~gDa~~~l~~l~~~~Da~ylDg-FsP~~nPelWs~e~~~~l~~~~~~~~~l~Ty 89 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLDARFDAWYLDG-FSPAKNPELWSEELFKKLARLSKPGGTLATY 89 (124)
T ss_dssp EEEEES-HHHHHHHB-T-EEEEEE-S-S-TTTSGGGSSHHHHHHHHHHEEEEEEEEES
T ss_pred EEEEEcHHHHHHHhCcccCCEEEecC-CCCcCCcccCCHHHHHHHHHHhCCCcEEEEe
Confidence 344555552 2332237799998754 22211 111 68999999999999988753
No 372
>PF14881 Tubulin_3: Tubulin domain
Probab=38.00 E-value=18 Score=33.39 Aligned_cols=61 Identities=20% Similarity=0.500 Sum_probs=34.9
Q ss_pred CCChhhhhhh---hHHHHHHHHHHHHhhccCCCCCceeeeccCcCccchhhhcc--------CCCc-eeeeecCC
Q 013605 321 GVSAESYQED---SNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQ--------SSKL-WVMNVVPT 383 (439)
Q Consensus 321 ~~~~~~f~~d---~~~w~~~v~~y~~~~~~~~~~~~rnvmdm~a~~ggfaaal~--------~~~~-wvmnvvp~ 383 (439)
+.-.+.|++. .....+.++.|-.-=..+. -+.=+.|+..++||||+.+. ++++ |+.++-+.
T Consensus 44 ~~G~~~f~~~~~~~d~~D~~lR~f~EECD~lQ--GfQ~~~d~d~gwgGfas~~Le~L~DEy~k~~i~~~~~~~~~ 116 (180)
T PF14881_consen 44 GVGQELFKSLDYEEDFFDRDLRFFLEECDSLQ--GFQVLTDVDDGWGGFASSLLEHLRDEYPKKPIIWVWGLRDP 116 (180)
T ss_pred cchHHHHhhhhhhhHHHHHHHHHHHHHccccc--ceEEEecCCCchHhHHHHHHHHHHHHcCCCceEEeecCCCc
Confidence 3345555542 2344444554432111111 23348899999999999995 3464 98777554
No 373
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=37.59 E-value=87 Score=31.80 Aligned_cols=94 Identities=16% Similarity=0.082 Sum_probs=59.5
Q ss_pred CEEEEECCC-CchHHHHHhhC---CcEEEeCCccchHHHHHHHH-HHcCCCeEEEEecccccCCCCCCccEEEecccccc
Q 013605 104 RTALDTGCG-VASWGAYLWSR---NVIAMSFAPRDSHEAQVQFA-LERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (439)
Q Consensus 104 ~~VLDIGCG-~G~~~~~La~~---~v~~vdis~~dis~a~i~~a-~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~ 178 (439)
.+|.=||-| .|..++.++-- .|+.+|++.. .++.. ...+..+.........+.-.-...|+|+.. +++.
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~-----rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIga-VLIp 242 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNID-----RLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGA-VLIP 242 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHH-----HHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEE-EEec
Confidence 457778888 46677776653 5888888653 22222 222333344333333333233568999875 4667
Q ss_pred cCCChHHHHHHHHHcCCCCeEEEEE
Q 013605 179 WGANDGRYMIEVDRVLRPGGYWVLS 203 (439)
Q Consensus 179 ~~~d~~~~L~ei~RvLkPGG~liis 203 (439)
-...|....+|+...+|||++++=.
T Consensus 243 gakaPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 243 GAKAPKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred CCCCceehhHHHHHhcCCCcEEEEE
Confidence 6667788999999999999988744
No 374
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=37.26 E-value=1.6e+02 Score=29.68 Aligned_cols=84 Identities=10% Similarity=0.046 Sum_probs=50.9
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC----C-cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccc
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----N-VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM 160 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~----~-v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~l 160 (439)
.-++++..+.|...+. ...+|.--|.|..+..+++. + ++++|-++..+..+.. ...+.+....+.......+
T Consensus 9 pVLl~E~i~~L~~~~~--giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~-~l~~~~~r~~~v~~~F~~l 85 (314)
T COG0275 9 PVLLNEVVELLAPKPD--GIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKE-RLKEFDGRVTLVHGNFANL 85 (314)
T ss_pred chHHHHHHHhcccCCC--cEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHH-HhhccCCcEEEEeCcHHHH
Confidence 4456677777765544 48999999999999999886 3 8899987754433222 1112223355555544333
Q ss_pred C-----CCCCCccEEEe
Q 013605 161 P-----YASRAFDMAHC 172 (439)
Q Consensus 161 p-----~~d~sFDlV~~ 172 (439)
. ...+.+|-|+.
T Consensus 86 ~~~l~~~~i~~vDGiL~ 102 (314)
T COG0275 86 AEALKELGIGKVDGILL 102 (314)
T ss_pred HHHHHhcCCCceeEEEE
Confidence 2 22345666654
No 375
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=36.75 E-value=2.1e+02 Score=28.26 Aligned_cols=92 Identities=17% Similarity=0.235 Sum_probs=48.1
Q ss_pred CCEEEEECCCC-chHHHHHhhC-Cc-EEEeCCccchHHHHHHHHHHcCCCeEEEEe--cc---cccCCCCCCccEEEecc
Q 013605 103 VRTALDTGCGV-ASWGAYLWSR-NV-IAMSFAPRDSHEAQVQFALERGVPAVIGVL--GT---IKMPYASRAFDMAHCSR 174 (439)
Q Consensus 103 ~~~VLDIGCG~-G~~~~~La~~-~v-~~vdis~~dis~a~i~~a~e~~~~~~~~~~--d~---~~lp~~d~sFDlV~~~~ 174 (439)
+.+||-.|+|. |..+..+++. |. ..+-++. ++.....+.+.+....+... +. ..+ .+.+.+|+|+...
T Consensus 164 g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~vd~vld~~ 239 (341)
T cd05281 164 GKSVLITGCGPIGLMAIAVAKAAGASLVIASDP---NPYRLELAKKMGADVVINPREEDVVEVKSV-TDGTGVDVVLEMS 239 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECC---CHHHHHHHHHhCcceeeCcccccHHHHHHH-cCCCCCCEEEECC
Confidence 44677777642 4455555554 44 2222322 12333455555543222111 00 111 1235689998642
Q ss_pred cccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 175 CLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 175 ~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
. ....+.++.+.|+++|.++..+.
T Consensus 240 g-------~~~~~~~~~~~l~~~G~~v~~g~ 263 (341)
T cd05281 240 G-------NPKAIEQGLKALTPGGRVSILGL 263 (341)
T ss_pred C-------CHHHHHHHHHHhccCCEEEEEcc
Confidence 1 13467888999999999987653
No 376
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=36.01 E-value=93 Score=25.55 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=34.5
Q ss_pred ECCCCchHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEecc
Q 013605 109 TGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSR 174 (439)
Q Consensus 109 IGCG~G~~~~~La~~~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~ 174 (439)
+-||+|--+.. ++.....+.+++.+.+....+......+-.....|+++++.
T Consensus 6 ~aCG~GvgSS~--------------~ik~kve~~l~~~gi~~~~~~~~v~~~~~~~~~aDiiv~s~ 57 (93)
T COG3414 6 AACGNGVGSST--------------MIKMKVEEVLKELGIDVDVEQCAVDEIKALTDGADIIVTST 57 (93)
T ss_pred EECCCCccHHH--------------HHHHHHHHHHHHcCCCceeeeEEecccccCCCcccEEEEeh
Confidence 34777755544 34444556788888887777666666664455679999875
No 377
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=35.86 E-value=3.2e+02 Score=27.14 Aligned_cols=34 Identities=29% Similarity=0.326 Sum_probs=24.7
Q ss_pred CCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 165 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
..+|+|+.... ....+.+..+.|+++|.++..+.
T Consensus 248 ~~~d~vid~~g-------~~~~~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 248 RGADVVIEASG-------HPAAVPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred CCCcEEEECCC-------ChHHHHHHHHHhccCCEEEEEcC
Confidence 46898885321 13467888899999999997653
No 378
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=35.03 E-value=2.8e+02 Score=28.16 Aligned_cols=90 Identities=18% Similarity=0.083 Sum_probs=52.2
Q ss_pred EEEEECCCCchHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEecccccccCCCh-
Q 013605 105 TALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAND- 183 (439)
Q Consensus 105 ~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~~~d~- 183 (439)
+||=+|--...+...|....+.+... ..+..+ ......+....|. .... .+ ...+||+|+.. |+...
T Consensus 22 ~~l~~~~~~d~~~~~l~~~~~~~~~~---~~~~~~-~~~~~~~~~~~f~-~~~~-~~-~~~~~d~~~~~-----~pk~k~ 89 (342)
T PRK09489 22 RVLFAGDLQDDLPAQLDAASVRVHTQ---QFHHWQ-VLSRQMGDNARFS-LVAT-AE-DVADCDTLIYY-----WPKNKQ 89 (342)
T ss_pred cEEEEcCcchhhHHhhhccceEEehh---hhHHHH-HHHhhcCCceEec-cccC-Cc-cCCCCCEEEEE-----CCCCHH
Confidence 68989988888887776433333322 222221 1222223333333 1111 11 12579998763 44333
Q ss_pred --HHHHHHHHHcCCCCeEEEEEeCC
Q 013605 184 --GRYMIEVDRVLRPGGYWVLSGPP 206 (439)
Q Consensus 184 --~~~L~ei~RvLkPGG~liis~p~ 206 (439)
...|..+.+.|+|||.+++.+..
T Consensus 90 ~~~~~l~~~~~~l~~g~~i~~~G~~ 114 (342)
T PRK09489 90 EAQFQLMNLLSLLPVGTDIFVVGEN 114 (342)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEEec
Confidence 57789999999999999999753
No 379
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=34.82 E-value=82 Score=26.37 Aligned_cols=78 Identities=15% Similarity=0.185 Sum_probs=49.1
Q ss_pred EEEEECCCCchHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCC--CCCCccEEEecccccccCCC
Q 013605 105 TALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPY--ASRAFDMAHCSRCLIPWGAN 182 (439)
Q Consensus 105 ~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~--~d~sFDlV~~~~~l~~~~~d 182 (439)
+|| +-||.|.-+..++ +...+.+.++|.++.+...+...++- ....||+|++.. .
T Consensus 3 kIL-lvCg~G~STSlla---------------~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~P-------Q 59 (104)
T PRK09590 3 KAL-IICAAGMSSSMMA---------------KKTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSP-------Q 59 (104)
T ss_pred EEE-EECCCchHHHHHH---------------HHHHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEECh-------H
Confidence 344 6688886554333 33456778888888777666655542 234689998863 2
Q ss_pred hHHHHHHHHHcCCCCeEEEEEeC
Q 013605 183 DGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 183 ~~~~L~ei~RvLkPGG~liis~p 205 (439)
..-.+.++...+.+.|.-+...+
T Consensus 60 i~~~~~~i~~~~~~~~ipv~~I~ 82 (104)
T PRK09590 60 TKMYFKQFEEAGAKVGKPVVQIP 82 (104)
T ss_pred HHHHHHHHHHHhhhcCCCEEEeC
Confidence 34556778888877666555444
No 380
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=34.57 E-value=1.4e+02 Score=29.58 Aligned_cols=87 Identities=23% Similarity=0.206 Sum_probs=51.2
Q ss_pred EEEEECCC--CchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEecccccccC
Q 013605 105 TALDTGCG--VASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180 (439)
Q Consensus 105 ~VLDIGCG--~G~~~~~La~~~--v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~~ 180 (439)
+|+=+|.| -|+++..|.++| +.+++. |.+.+....+.+.++........ .-......|+|+.+- +..
T Consensus 5 ~v~IvG~GliG~s~a~~l~~~g~~v~i~g~---d~~~~~~~~a~~lgv~d~~~~~~---~~~~~~~aD~Vivav---Pi~ 75 (279)
T COG0287 5 KVGIVGLGLMGGSLARALKEAGLVVRIIGR---DRSAATLKAALELGVIDELTVAG---LAEAAAEADLVIVAV---PIE 75 (279)
T ss_pred EEEEECCchHHHHHHHHHHHcCCeEEEEee---cCcHHHHHHHhhcCcccccccch---hhhhcccCCEEEEec---cHH
Confidence 56667766 456777777776 445666 44456666666665432221111 011234589998753 221
Q ss_pred CChHHHHHHHHHcCCCCeEEE
Q 013605 181 ANDGRYMIEVDRVLRPGGYWV 201 (439)
Q Consensus 181 ~d~~~~L~ei~RvLkPGG~li 201 (439)
....+++++...|++|..+.
T Consensus 76 -~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 76 -ATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred -HHHHHHHHhcccCCCCCEEE
Confidence 23778888888888887665
No 381
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=33.72 E-value=1.7e+02 Score=29.47 Aligned_cols=33 Identities=15% Similarity=0.024 Sum_probs=23.4
Q ss_pred CccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 166 sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
.+|+|+-.-. ....+..+.+.|++||.++..+.
T Consensus 244 ~~D~vid~~g-------~~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 244 SLDYIIDTVP-------VFHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred CCcEEEECCC-------chHHHHHHHHHhccCCEEEEECC
Confidence 4888875321 13467788899999999988653
No 382
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=32.84 E-value=2.6e+02 Score=28.79 Aligned_cols=96 Identities=17% Similarity=0.087 Sum_probs=50.9
Q ss_pred CEEEEECCC-CchHHHHHhhC-Cc---EEEeCCccchHHHHHHHHHHcCCCeEEEEe---cc-cccC--CCCCCccEEEe
Q 013605 104 RTALDTGCG-VASWGAYLWSR-NV---IAMSFAPRDSHEAQVQFALERGVPAVIGVL---GT-IKMP--YASRAFDMAHC 172 (439)
Q Consensus 104 ~~VLDIGCG-~G~~~~~La~~-~v---~~vdis~~dis~a~i~~a~e~~~~~~~~~~---d~-~~lp--~~d~sFDlV~~ 172 (439)
.+||=.|+| .|..+..+++. |. .++|. +....+.+++.|... +... +. ..+. .....+|+|+-
T Consensus 187 ~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~-----~~~r~~~a~~~Ga~~-v~~~~~~~~~~~v~~~~~~~g~Dvvid 260 (393)
T TIGR02819 187 STVYIAGAGPVGLAAAASAQLLGAAVVIVGDL-----NPARLAQARSFGCET-VDLSKDATLPEQIEQILGEPEVDCAVD 260 (393)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCC-----CHHHHHHHHHcCCeE-EecCCcccHHHHHHHHcCCCCCcEEEE
Confidence 366667775 33444455543 43 22333 235666777777642 2111 11 1110 12345899885
Q ss_pred cccccc-------cCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 173 SRCLIP-------WGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 173 ~~~l~~-------~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
.-.... ...+....+.+..+.+++||.+++.+.
T Consensus 261 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 261 CVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 332100 001113578999999999999999763
No 383
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=32.77 E-value=2.7e+02 Score=27.92 Aligned_cols=91 Identities=19% Similarity=0.103 Sum_probs=48.8
Q ss_pred CCEEEEECCC-CchHHHHHhhC-C---cEEEeCCccchHHHHHHHHHHcCCCeEEEEec----c-ccc-CCCCCCccEEE
Q 013605 103 VRTALDTGCG-VASWGAYLWSR-N---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLG----T-IKM-PYASRAFDMAH 171 (439)
Q Consensus 103 ~~~VLDIGCG-~G~~~~~La~~-~---v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d----~-~~l-p~~d~sFDlV~ 171 (439)
+.+||=.|+| .|.++..+++. | +++++.+ ....+.+++.|....+...+ . +.+ ....+.+|+|+
T Consensus 188 g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~-----~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vi 262 (369)
T cd08301 188 GSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLN-----PSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSF 262 (369)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC-----HHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEE
Confidence 4588888864 23344445543 4 4444443 34556676666543332111 0 000 11223688887
Q ss_pred ecccccccCCChHHHHHHHHHcCCCC-eEEEEEeC
Q 013605 172 CSRCLIPWGANDGRYMIEVDRVLRPG-GYWVLSGP 205 (439)
Q Consensus 172 ~~~~l~~~~~d~~~~L~ei~RvLkPG-G~liis~p 205 (439)
-... ....+..+.+.+++| |.+++.+.
T Consensus 263 d~~G-------~~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 263 ECTG-------NIDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred ECCC-------ChHHHHHHHHHhhcCCCEEEEECc
Confidence 5321 145677788899996 99987653
No 384
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=32.13 E-value=60 Score=31.76 Aligned_cols=61 Identities=11% Similarity=0.054 Sum_probs=39.1
Q ss_pred EEEEECCCCchHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccC---CCCCCccEEEec
Q 013605 105 TALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP---YASRAFDMAHCS 173 (439)
Q Consensus 105 ~VLDIGCG~G~~~~~La~~~---v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp---~~d~sFDlV~~~ 173 (439)
+++|+=||.|.+..-|...| +.++|+++. +.+.-+.+.. .....|+..+. ++. .+|+++..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~-----a~~~y~~N~~--~~~~~Di~~~~~~~l~~-~~D~l~gg 68 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPD-----ACETYKANFP--EVICGDITEIDPSDLPK-DVDLLIGG 68 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHH-----HHHHHHHHHT--EEEESHGGGCHHHHHHH-T-SEEEEE
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHH-----HHHhhhhccc--ccccccccccccccccc-cceEEEec
Confidence 69999999999999999887 567777552 2222222222 66667775554 343 59999954
No 385
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=31.51 E-value=1.3e+02 Score=33.64 Aligned_cols=41 Identities=27% Similarity=0.258 Sum_probs=32.0
Q ss_pred CCcchHHHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhhC
Q 013605 80 QFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR 123 (439)
Q Consensus 80 ~f~~g~~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~ 123 (439)
|.+.|+.-.+.-|.+.+..... -+|-.|-|+|..++.+++.
T Consensus 303 Q~ATGAHYKlRsIL~~~~i~~~---d~l~~GDGSGGita~lLR~ 343 (675)
T PF14314_consen 303 QLATGAHYKLRSILKNLNIKYR---DALCGGDGSGGITACLLRM 343 (675)
T ss_pred cccccchhhHHHHHHhcCCCcc---eeEEEecCchHHHHHHHHh
Confidence 4567777777778777765443 5899999999999999875
No 386
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=31.13 E-value=3.2e+02 Score=27.38 Aligned_cols=91 Identities=18% Similarity=0.154 Sum_probs=49.6
Q ss_pred CCEEEEECCCC-chHHHHHhhC-C---cEEEeCCccchHHHHHHHHHHcCCCeEEEEec--c-ccc-CCCCCCccEEEec
Q 013605 103 VRTALDTGCGV-ASWGAYLWSR-N---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLG--T-IKM-PYASRAFDMAHCS 173 (439)
Q Consensus 103 ~~~VLDIGCG~-G~~~~~La~~-~---v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d--~-~~l-p~~d~sFDlV~~~ 173 (439)
+.+||=.|+|. |..+..+++. | +++++.++ ...+.+.+.+....+...+ . +.+ ......+|+|+-.
T Consensus 187 g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~-----~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld~ 261 (365)
T cd08278 187 GSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVD-----SRLELAKELGATHVINPKEEDLVAAIREITGGGVDYALDT 261 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH-----HHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEEC
Confidence 34788887642 4455555554 3 44554433 3444555555432221111 0 000 0113468988853
Q ss_pred ccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 174 RCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 174 ~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
-. . ...+.++.+.|+++|.++..+.
T Consensus 262 ~g------~-~~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 262 TG------V-PAVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred CC------C-cHHHHHHHHHhccCCEEEEeCc
Confidence 21 1 3467889999999999998754
No 387
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=30.62 E-value=33 Score=31.48 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=19.8
Q ss_pred HHHHHHHHHcCCCCeEEEEEeCCC
Q 013605 184 GRYMIEVDRVLRPGGYWVLSGPPI 207 (439)
Q Consensus 184 ~~~L~ei~RvLkPGG~liis~p~~ 207 (439)
...+.++.|+|||||.+++.....
T Consensus 36 ~~~~~~~~rvLk~~g~~~i~~~~~ 59 (231)
T PF01555_consen 36 EEWLKECYRVLKPGGSIFIFIDDR 59 (231)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE-CC
T ss_pred HHHHHHHHhhcCCCeeEEEEecch
Confidence 578999999999999999976543
No 388
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=30.58 E-value=4.6e+02 Score=24.88 Aligned_cols=97 Identities=7% Similarity=-0.008 Sum_probs=54.6
Q ss_pred CCEEEEECCCCchHHHHHhhC--------CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccC------CCCCCcc
Q 013605 103 VRTALDTGCGVASWGAYLWSR--------NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP------YASRAFD 168 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La~~--------~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp------~~d~sFD 168 (439)
++.|+++|.--|..+.+.+.. .|.++|++-.....++++ -..+.+..++..... .-.+.+-
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~egss~dpai~eqi~~~~~~y~ 144 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIEGSSTDPAIAEQIRRLKNEYP 144 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEeCCCCCHHHHHHHHHHhcCCC
Confidence 348999999888766665542 378888865544333332 345666666543221 0111122
Q ss_pred EEE-ecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 169 MAH-CSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 169 lV~-~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
-|+ |-.+- |-.+..-+-|+-..++|..|-|+++.+.
T Consensus 145 kIfvilDsd-Hs~~hvLAel~~~~pllsaG~Y~vVeDs 181 (237)
T COG3510 145 KIFVILDSD-HSMEHVLAELKLLAPLLSAGDYLVVEDS 181 (237)
T ss_pred cEEEEecCC-chHHHHHHHHHHhhhHhhcCceEEEecc
Confidence 233 32222 3332224556667788999999998653
No 389
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=30.41 E-value=3.5e+02 Score=26.61 Aligned_cols=92 Identities=18% Similarity=0.210 Sum_probs=45.3
Q ss_pred CEEEEECCC-CchHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEecccccccCC
Q 013605 104 RTALDTGCG-VASWGAYLWSR-NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGA 181 (439)
Q Consensus 104 ~~VLDIGCG-~G~~~~~La~~-~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~~~ 181 (439)
.+||=.||| .|..+..+++. ++..+-++.. ....+.+.+.+....+...+........+.+|+|+.....
T Consensus 171 ~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~----- 242 (337)
T cd05283 171 KRVGVVGIGGLGHLAVKFAKALGAEVTAFSRS---PSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSA----- 242 (337)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCC-----
Confidence 356557763 33344444443 5433333221 2334455555543322211110001113568988853211
Q ss_pred ChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 182 NDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 182 d~~~~L~ei~RvLkPGG~liis~p 205 (439)
...+..+.+.|+++|.++..+.
T Consensus 243 --~~~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 243 --SHDLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred --cchHHHHHHHhcCCCEEEEEec
Confidence 1246788899999999997653
No 390
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=30.34 E-value=3.7e+02 Score=26.84 Aligned_cols=90 Identities=19% Similarity=0.149 Sum_probs=47.8
Q ss_pred CCEEEEECCC-CchHHHHHhhC-Cc---EEEeCCccchHHHHHHHHHHcCCCeEEEEe--cc-ccc-C-CCCCCccEEEe
Q 013605 103 VRTALDTGCG-VASWGAYLWSR-NV---IAMSFAPRDSHEAQVQFALERGVPAVIGVL--GT-IKM-P-YASRAFDMAHC 172 (439)
Q Consensus 103 ~~~VLDIGCG-~G~~~~~La~~-~v---~~vdis~~dis~a~i~~a~e~~~~~~~~~~--d~-~~l-p-~~d~sFDlV~~ 172 (439)
+.+||-.|+| .|..+..+++. |+ ++++-+ +...+++.+.+....+... +. ..+ . .+.+.+|+|+.
T Consensus 183 g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~-----~~~~~~~~~~g~~~vv~~~~~~~~~~l~~~~~~~~vd~vld 257 (363)
T cd08279 183 GDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPV-----PEKLELARRFGATHTVNASEDDAVEAVRDLTDGRGADYAFE 257 (363)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCC-----HHHHHHHHHhCCeEEeCCCCccHHHHHHHHcCCCCCCEEEE
Confidence 3478877774 34555555554 43 333332 2333445555542222110 10 111 1 12456998875
Q ss_pred cccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 173 SRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 173 ~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
... ....+.++.+.|+++|.++..+
T Consensus 258 ~~~-------~~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 258 AVG-------RAATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred cCC-------ChHHHHHHHHHhhcCCeEEEEe
Confidence 321 1356788999999999998764
No 391
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=30.25 E-value=3e+02 Score=27.12 Aligned_cols=93 Identities=16% Similarity=0.189 Sum_probs=48.0
Q ss_pred CCEEEEECCC-CchHHHHHhhC-CcE-EEeCCccchHHHHHHHHHHcCCCeEEEEe--cc-ccc--CCCCCCccEEEecc
Q 013605 103 VRTALDTGCG-VASWGAYLWSR-NVI-AMSFAPRDSHEAQVQFALERGVPAVIGVL--GT-IKM--PYASRAFDMAHCSR 174 (439)
Q Consensus 103 ~~~VLDIGCG-~G~~~~~La~~-~v~-~vdis~~dis~a~i~~a~e~~~~~~~~~~--d~-~~l--p~~d~sFDlV~~~~ 174 (439)
+.+||-.|+| .|..+..++.. |+. .+-++. ++...+.+++.+....+... +. +.+ ....+.||+|+...
T Consensus 162 g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~---~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld~~ 238 (340)
T TIGR00692 162 GKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDP---NEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEMS 238 (340)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECC---CHHHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEEECC
Confidence 3466666764 34455555553 432 222222 12334455555543222111 10 111 11345699988642
Q ss_pred cccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 175 CLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 175 ~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
. ....+.++.+.|+++|.++..+.
T Consensus 239 g-------~~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 239 G-------APKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred C-------CHHHHHHHHHhhcCCCEEEEEcc
Confidence 1 13567889999999999987754
No 392
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=29.99 E-value=2.6e+02 Score=27.70 Aligned_cols=91 Identities=19% Similarity=0.114 Sum_probs=47.3
Q ss_pred CCEEEEECCC-CchHHHHHhhC-Cc---EEEeCCccchHHHHHHHHHHcCCCeEEEEecc---ccc-C-CCCCCccEEEe
Q 013605 103 VRTALDTGCG-VASWGAYLWSR-NV---IAMSFAPRDSHEAQVQFALERGVPAVIGVLGT---IKM-P-YASRAFDMAHC 172 (439)
Q Consensus 103 ~~~VLDIGCG-~G~~~~~La~~-~v---~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~---~~l-p-~~d~sFDlV~~ 172 (439)
+.+||=.|+| .|..+..++.. |+ .+++.++ ...+.+.+.+....+...+. +.+ . ...+.+|+|+-
T Consensus 173 g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~-----~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid 247 (351)
T cd08233 173 GDTALVLGAGPIGLLTILALKAAGASKIIVSEPSE-----ARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFD 247 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH-----HHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEE
Confidence 3477777753 23344444443 54 3333322 33445555554332211110 011 1 12345899886
Q ss_pred cccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 173 SRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 173 ~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
... ....+.++.+.|+++|.++..+.
T Consensus 248 ~~g-------~~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 248 CAG-------VQATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CCC-------CHHHHHHHHHhccCCCEEEEEcc
Confidence 421 13467888999999999987653
No 393
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=29.52 E-value=2.8e+02 Score=28.07 Aligned_cols=99 Identities=13% Similarity=0.185 Sum_probs=59.9
Q ss_pred eEEEEecccccC--CCCCCccEEEecccccccCCCh--HHHHHHHHHcCCCCeEEEEEeCCCCccccccccCCChHHHHH
Q 013605 150 AVIGVLGTIKMP--YASRAFDMAHCSRCLIPWGAND--GRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQE 225 (439)
Q Consensus 150 ~~~~~~d~~~lp--~~d~sFDlV~~~~~l~~~~~d~--~~~L~ei~RvLkPGG~liis~p~~~~~~~~~~~~~~~e~l~~ 225 (439)
+.+..+++.++- -+.++.|.++...+- .|.++. ..++.++.|-+.+|..+|+-+.... ... -.+-.+.+.+
T Consensus 309 V~ihha~~iE~l~~k~ag~Vdr~iLlDaq-dwmtd~qln~lws~isrta~~gA~VifRtaae~--s~~--~gR~s~~ird 383 (414)
T COG5379 309 VAIHHADIIELLAGKPAGNVDRYILLDAQ-DWMTDGQLNSLWSEISRTAEAGARVIFRTAAEV--SRL--PGRLSTQIRD 383 (414)
T ss_pred eeeecccHHHHhccCCCCCcceEEEecch-hhcccchHHHHHHHHhhccCCCcEEEEecccce--ecC--CCCCcHHHHH
Confidence 556666664443 367889999987754 666665 7899999999999999999653110 001 1134455666
Q ss_pred HHHHHHHHHHhcceee--ecccCcEEEEecc
Q 013605 226 EQRKIEEIANLLCWEK--KSEKGEIAVWQKK 254 (439)
Q Consensus 226 ~~~~l~~l~~~l~W~~--~~~~~~~~Iwqkp 254 (439)
.|.-+.+-...+ |.. .+.-+.+-||+|.
T Consensus 384 qw~ylae~s~el-~a~DrsaiyGgfhiyrk~ 413 (414)
T COG5379 384 QWAYLAEESTEL-WAIDRSAIYGGFHIYRKL 413 (414)
T ss_pred HHHHHHHHhhhh-hhhhhHhhhCcccceecc
Confidence 666555544443 321 2233345566553
No 394
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=29.29 E-value=2.5e+02 Score=29.41 Aligned_cols=98 Identities=16% Similarity=0.056 Sum_probs=53.6
Q ss_pred HHHHHHhhcCCCCCCCCEEEEECCCC-chHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCC
Q 013605 88 YIDQLASVIPIKNGTVRTALDTGCGV-ASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA 163 (439)
Q Consensus 88 ~i~~l~~~l~~~~~~~~~VLDIGCG~-G~~~~~La~~---~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~ 163 (439)
.++.+.+.... .-.+++|+=+|+|. |...+..+.. .|+++|.++. . ...+...|. .+ .+.+.. .
T Consensus 181 ~~~~i~r~t~~-~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~---r--~~~A~~~G~--~v--~~leea-l- 248 (406)
T TIGR00936 181 TIDGILRATNL-LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI---R--ALEAAMDGF--RV--MTMEEA-A- 248 (406)
T ss_pred HHHHHHHhcCC-CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh---h--HHHHHhcCC--Ee--CCHHHH-H-
Confidence 34444444321 12345899999985 4444444443 4778888663 1 123333342 11 122211 1
Q ss_pred CCCccEEEecccccccCCChHHHH-HHHHHcCCCCeEEEEEeC
Q 013605 164 SRAFDMAHCSRCLIPWGANDGRYM-IEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 164 d~sFDlV~~~~~l~~~~~d~~~~L-~ei~RvLkPGG~liis~p 205 (439)
...|+|++.. .. ...+ .+....+|+|++++..+.
T Consensus 249 -~~aDVVItaT------G~-~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 249 -KIGDIFITAT------GN-KDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred -hcCCEEEECC------CC-HHHHHHHHHhcCCCCcEEEEECC
Confidence 2469987743 12 3344 458899999999998864
No 395
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=29.10 E-value=4.1e+02 Score=26.47 Aligned_cols=83 Identities=20% Similarity=0.194 Sum_probs=49.0
Q ss_pred CCCEEEEECCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEeccccccc
Q 013605 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (439)
Q Consensus 102 ~~~~VLDIGCG~G~~~~~La~~~--v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~~ 179 (439)
.+....|+|+-.|.++-.|.+++ |+++|-.+ + .+-....| .+.....|-....-.....|-.+|..+
T Consensus 211 ~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~-m-----a~sL~dtg-~v~h~r~DGfk~~P~r~~idWmVCDmV---- 279 (358)
T COG2933 211 PGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGP-M-----AQSLMDTG-QVTHLREDGFKFRPTRSNIDWMVCDMV---- 279 (358)
T ss_pred CCceeeecccCCCccchhhhhcceEEEEeccch-h-----hhhhhccc-ceeeeeccCcccccCCCCCceEEeehh----
Confidence 45689999999999999999997 56666533 1 11112222 233333343322213566999999653
Q ss_pred CCChHHHHHHHHHcCCC
Q 013605 180 GANDGRYMIEVDRVLRP 196 (439)
Q Consensus 180 ~~d~~~~L~ei~RvLkP 196 (439)
+.+.+.-.-|..-|..
T Consensus 280 -EkP~rv~~li~~Wl~n 295 (358)
T COG2933 280 -EKPARVAALIAKWLVN 295 (358)
T ss_pred -cCcHHHHHHHHHHHHc
Confidence 3555555555555543
No 396
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=28.18 E-value=89 Score=32.14 Aligned_cols=95 Identities=14% Similarity=0.042 Sum_probs=45.9
Q ss_pred CCEEEEECCC-CchHHHHHhhC-C--cEEEeCCccchHHHHHHHHH-HcCCCeEEEEecccccCCCCCCccEEEeccccc
Q 013605 103 VRTALDTGCG-VASWGAYLWSR-N--VIAMSFAPRDSHEAQVQFAL-ERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (439)
Q Consensus 103 ~~~VLDIGCG-~G~~~~~La~~-~--v~~vdis~~dis~a~i~~a~-e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~ 177 (439)
..+|+=+|+| .|..+...+.. | |+++|.++. ..+.+. ..+..+.....+...+.-.-..+|+|+..-..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~-----~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~- 240 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINID-----RLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLI- 240 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHH-----HHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEcccc-
Confidence 3579999988 44444444443 4 677776542 222222 22221111111111111111358999975311
Q ss_pred ccCCChHHHHHHHHHcCCCCeEEEEE
Q 013605 178 PWGANDGRYMIEVDRVLRPGGYWVLS 203 (439)
Q Consensus 178 ~~~~d~~~~L~ei~RvLkPGG~liis 203 (439)
.-...+..+-+++.+.++||++++-.
T Consensus 241 ~g~~~p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 241 PGAKAPKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred CCCCCCcCcCHHHHhcCCCCCEEEEE
Confidence 11111222346777888999887754
No 397
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=28.14 E-value=3.1e+02 Score=24.61 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=18.6
Q ss_pred CCCCCCccEEEecccccccCCCh-HHHHHHHHHcCCCCe
Q 013605 161 PYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGG 198 (439)
Q Consensus 161 p~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG 198 (439)
|-.-..||+|+|..| |+. |+ ..++....+-+...|
T Consensus 90 p~~~~~yd~II~DEc--H~~-Dp~sIA~rg~l~~~~~~g 125 (148)
T PF07652_consen 90 PCRLKNYDVIIMDEC--HFT-DPTSIAARGYLRELAESG 125 (148)
T ss_dssp SSCTTS-SEEEECTT--T---SHHHHHHHHHHHHHHHTT
T ss_pred cccccCccEEEEecc--ccC-CHHHHhhheeHHHhhhcc
Confidence 334467999999986 776 55 444444444444444
No 398
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=27.92 E-value=70 Score=34.25 Aligned_cols=97 Identities=13% Similarity=0.159 Sum_probs=57.7
Q ss_pred CCCEEEEECCCCchHHHHHhhC--C---cEEEeCCccchHHHHHHHHHHcCCCeE--EEEeccc----ccCCCCCCccEE
Q 013605 102 TVRTALDTGCGVASWGAYLWSR--N---VIAMSFAPRDSHEAQVQFALERGVPAV--IGVLGTI----KMPYASRAFDMA 170 (439)
Q Consensus 102 ~~~~VLDIGCG~G~~~~~La~~--~---v~~vdis~~dis~a~i~~a~e~~~~~~--~~~~d~~----~lp~~d~sFDlV 170 (439)
++.+|||.=|++|.-+...+.. + +++-|.++..+...+. .++-.+.... -...|+. ..+-.+..||+|
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~-Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQR-NVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHh-hhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 3458999999999777666654 2 5555554432221111 1121222211 1233332 223346789999
Q ss_pred EecccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 171 HCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 171 ~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
.... +. .+..+|..+.+.++.||.+.++.
T Consensus 188 DLDP----yG-s~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 188 DLDP----YG-SPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ecCC----CC-CccHHHHHHHHHhhcCCEEEEEe
Confidence 7643 22 34789999999999999999975
No 399
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.58 E-value=2.6e+02 Score=24.23 Aligned_cols=77 Identities=14% Similarity=0.080 Sum_probs=44.8
Q ss_pred EEEEECCCCch-HHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCC-CCCccEEEecccccccC
Q 013605 105 TALDTGCGVAS-WGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA-SRAFDMAHCSRCLIPWG 180 (439)
Q Consensus 105 ~VLDIGCG~G~-~~~~La~~~--v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~-d~sFDlV~~~~~l~~~~ 180 (439)
+|.++|-|-=. .+..|+++| ++++|+.+. .+. ....+.+-|+.+--.. -...|+|++..+-
T Consensus 16 kVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~--------~a~---~g~~~v~DDitnP~~~iY~~A~lIYSiRpp---- 80 (129)
T COG1255 16 KVVEVGIGFFLDVAKRLAERGFDVLATDINEK--------TAP---EGLRFVVDDITNPNISIYEGADLIYSIRPP---- 80 (129)
T ss_pred cEEEEccchHHHHHHHHHHcCCcEEEEecccc--------cCc---ccceEEEccCCCccHHHhhCccceeecCCC----
Confidence 79999988664 556677775 788888653 222 2244554454332211 2347999987632
Q ss_pred CChHHHHHHHHHcCCC
Q 013605 181 ANDGRYMIEVDRVLRP 196 (439)
Q Consensus 181 ~d~~~~L~ei~RvLkP 196 (439)
++....+-++.+.++-
T Consensus 81 pEl~~~ildva~aVga 96 (129)
T COG1255 81 PELQSAILDVAKAVGA 96 (129)
T ss_pred HHHHHHHHHHHHhhCC
Confidence 2335556666665543
No 400
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=27.53 E-value=3.5e+02 Score=26.58 Aligned_cols=91 Identities=16% Similarity=0.148 Sum_probs=49.7
Q ss_pred CCEEEEECCCC-chHHHHHhhC-Cc---EEEeCCccchHHHHHHHHHHcCCCeEEEEecc---ccc-C-CCCCCccEEEe
Q 013605 103 VRTALDTGCGV-ASWGAYLWSR-NV---IAMSFAPRDSHEAQVQFALERGVPAVIGVLGT---IKM-P-YASRAFDMAHC 172 (439)
Q Consensus 103 ~~~VLDIGCG~-G~~~~~La~~-~v---~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~---~~l-p-~~d~sFDlV~~ 172 (439)
+.+||=.|+|. |..+..+++. |+ .+++-+ +...+++.+.|....+...+. ..+ . .....+|+|+.
T Consensus 164 g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~-----~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~d~v~d 238 (341)
T PRK05396 164 GEDVLITGAGPIGIMAAAVAKHVGARHVVITDVN-----EYRLELARKMGATRAVNVAKEDLRDVMAELGMTEGFDVGLE 238 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC-----HHHHHHHHHhCCcEEecCccccHHHHHHHhcCCCCCCEEEE
Confidence 44677777653 4455555553 43 334322 234455666665432211110 001 1 12456898886
Q ss_pred cccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 173 SRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 173 ~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
... ....+..+.+.|+++|.++..+.
T Consensus 239 ~~g-------~~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 239 MSG-------APSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred CCC-------CHHHHHHHHHHHhcCCEEEEEec
Confidence 321 14577889999999999998864
No 401
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=26.94 E-value=2.2e+02 Score=23.17 Aligned_cols=83 Identities=13% Similarity=0.071 Sum_probs=47.6
Q ss_pred CCCchHHHHHhhC----C--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccC----CCCCCccEEEecccccccC
Q 013605 111 CGVASWGAYLWSR----N--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP----YASRAFDMAHCSRCLIPWG 180 (439)
Q Consensus 111 CG~G~~~~~La~~----~--v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp----~~d~sFDlV~~~~~l~~~~ 180 (439)
||.|.++..+++. + ++.+|.++ ..++.+.+.+ ..+..+|..+.. ..-...|.|++..-
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~-----~~~~~~~~~~--~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDP-----ERVEELREEG--VEVIYGDATDPEVLERAGIEKADAVVILTD----- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSH-----HHHHHHHHTT--SEEEES-TTSHHHHHHTTGGCESEEEEESS-----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCc-----HHHHHHHhcc--cccccccchhhhHHhhcCccccCEEEEccC-----
Confidence 5666777666553 4 77887755 3455666666 445556653321 22346788877531
Q ss_pred CCh-HHHHHHHHHcCCCCeEEEEEeC
Q 013605 181 AND-GRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 181 ~d~-~~~L~ei~RvLkPGG~liis~p 205 (439)
.+. ...+....|-+-|...++....
T Consensus 72 ~d~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 72 DDEENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp SHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred CHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 122 3455556677788888887654
No 402
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=26.51 E-value=3.7e+02 Score=26.84 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=24.8
Q ss_pred CCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 164 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
+..||+|+.... . ...+.++.+.|+++|.++..+
T Consensus 254 ~~~~d~vld~vg------~-~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 254 GRGVDVVVEALG------K-PETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred CCCCCEEEEeCC------C-HHHHHHHHHHHhcCCEEEEEc
Confidence 456999986421 1 236788899999999998765
No 403
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=26.31 E-value=1.6e+02 Score=31.00 Aligned_cols=84 Identities=15% Similarity=0.094 Sum_probs=46.0
Q ss_pred CCEEEEECCCC-chHHHHHhh-CC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEecccccc
Q 013605 103 VRTALDTGCGV-ASWGAYLWS-RN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (439)
Q Consensus 103 ~~~VLDIGCG~-G~~~~~La~-~~--v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~~ 178 (439)
+++|+=+|+|. |...+..+. .| |+++|+++.- ...+...|.. + .+...+ -..+|+|+...
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~r-----a~~A~~~G~~--v--~~l~ea---l~~aDVVI~aT---- 275 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPIC-----ALQAAMDGFR--V--MTMEEA---AELGDIFVTAT---- 275 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchh-----hHHHHhcCCE--e--cCHHHH---HhCCCEEEECC----
Confidence 45899999873 333333232 23 7777776531 1222233322 1 122221 12589998743
Q ss_pred cCCChHHHHH-HHHHcCCCCeEEEEEeC
Q 013605 179 WGANDGRYMI-EVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 179 ~~~d~~~~L~-ei~RvLkPGG~liis~p 205 (439)
.. ..++. +..+.+|+|++++..+.
T Consensus 276 --G~-~~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 276 --GN-KDVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred --CC-HHHHHHHHHhcCCCCCEEEEcCC
Confidence 12 33454 78899999999998764
No 404
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=26.07 E-value=1.6e+02 Score=30.50 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=36.3
Q ss_pred HhhcCCCCCCCCEEEEECCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHc
Q 013605 93 ASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALER 146 (439)
Q Consensus 93 ~~~l~~~~~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~a~i~~a~e~ 146 (439)
.+.|++.+++ +||-|..|-.....+|+.. .|++||++|...+-...+.|.-+
T Consensus 28 ~~aL~i~~~d--~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKlAair 81 (380)
T PF11899_consen 28 MEALNIGPDD--RVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLELKLAAIR 81 (380)
T ss_pred HHHhCCCCCC--eEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 3455544444 8999987777777776664 69999999987666666665544
No 405
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=25.52 E-value=1.5e+02 Score=23.43 Aligned_cols=30 Identities=10% Similarity=0.071 Sum_probs=19.8
Q ss_pred HHHHcCCCeEEEEecccccCCCCCCccEEEecc
Q 013605 142 FALERGVPAVIGVLGTIKMPYASRAFDMAHCSR 174 (439)
Q Consensus 142 ~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~ 174 (439)
...+.+....+...+...+. ..+|+|++..
T Consensus 24 ~~~~~~~~~~v~~~~~~~~~---~~~Dliitt~ 53 (87)
T cd05567 24 KLKKAGLEIPVTNSAIDELP---SDADLVVTHA 53 (87)
T ss_pred HHHHCCCceEEEEcchhhCC---CCCCEEEECh
Confidence 44455666666666665554 5689999865
No 406
>PRK10083 putative oxidoreductase; Provisional
Probab=25.14 E-value=4.9e+02 Score=25.39 Aligned_cols=91 Identities=21% Similarity=0.146 Sum_probs=47.7
Q ss_pred CCEEEEECCC-CchHHHHHhh-C-Cc---EEEeCCccchHHHHHHHHHHcCCCeEEEEec--c-cccCCCCCCccEEEec
Q 013605 103 VRTALDTGCG-VASWGAYLWS-R-NV---IAMSFAPRDSHEAQVQFALERGVPAVIGVLG--T-IKMPYASRAFDMAHCS 173 (439)
Q Consensus 103 ~~~VLDIGCG-~G~~~~~La~-~-~v---~~vdis~~dis~a~i~~a~e~~~~~~~~~~d--~-~~lp~~d~sFDlV~~~ 173 (439)
+.+||=.|+| .|..+..+++ . |+ .+++.+ +...+.+++.|....+...+ . +.+.-....+|+|+..
T Consensus 161 g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~-----~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~ 235 (339)
T PRK10083 161 QDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRI-----DERLALAKESGADWVINNAQEPLGEALEEKGIKPTLIIDA 235 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCC-----HHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEEEC
Confidence 4478888854 2344444555 2 53 333332 34455666666533332111 1 1111111235677653
Q ss_pred ccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 174 RCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 174 ~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
.. . ...+.+..+.|+++|.++..+.
T Consensus 236 ~g------~-~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 236 AC------H-PSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred CC------C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 21 1 3467888999999999998753
No 407
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=24.98 E-value=3.9e+02 Score=27.06 Aligned_cols=36 Identities=11% Similarity=0.118 Sum_probs=26.0
Q ss_pred CCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 164 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
...+|+|+... ......+.++.+.|+++|.++..+.
T Consensus 273 g~gvDvvld~~------g~~~~~~~~~~~~l~~~G~~v~~g~ 308 (384)
T cd08265 273 GWGADIQVEAA------GAPPATIPQMEKSIAINGKIVYIGR 308 (384)
T ss_pred CCCCCEEEECC------CCcHHHHHHHHHHHHcCCEEEEECC
Confidence 34699988642 1224567888999999999997653
No 408
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=24.63 E-value=1.1e+02 Score=24.89 Aligned_cols=41 Identities=22% Similarity=0.403 Sum_probs=25.7
Q ss_pred CCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeCCCC
Q 013605 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPIN 208 (439)
Q Consensus 164 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p~~~ 208 (439)
...||+++... ...+ ....|..+...++-||.+++..|+..
T Consensus 9 G~e~~~~i~d~-~~g~---~pnal~a~~gtv~gGGllill~p~~~ 49 (92)
T PF08351_consen 9 GQEFDLLIFDA-FEGF---DPNALAALAGTVRGGGLLILLLPPWE 49 (92)
T ss_dssp T--BSSEEEE--SS------HHHHHHHHTTB-TT-EEEEEES-GG
T ss_pred CCccCEEEEEc-cCCC---CHHHHHHHhcceecCeEEEEEcCCHH
Confidence 45688888753 2222 26788999999999999999988653
No 409
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=24.58 E-value=54 Score=28.38 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=27.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhc--cCCCCCceee
Q 013605 324 AESYQEDSNKWKKHVNAYKKINR--LLDSGRYRNI 356 (439)
Q Consensus 324 ~~~f~~d~~~w~~~v~~y~~~~~--~~~~~~~rnv 356 (439)
.=.|..-+.+|++|++.-|.+++ +|+.+++|=+
T Consensus 66 eCHy~~GN~ka~rR~~~lke~l~elgie~eRv~~~ 100 (132)
T COG1908 66 ECHYISGNYKAKRRMELLKELLKELGIEPERVRVL 100 (132)
T ss_pred ceeeeccchHHHHHHHHHHHHHHHhCCCcceEEEE
Confidence 34689999999999999999888 7888888843
No 410
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=24.33 E-value=5.1e+02 Score=24.65 Aligned_cols=91 Identities=19% Similarity=0.118 Sum_probs=50.6
Q ss_pred CCEEEEECC--CCchHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEe-cc-ccc-CCCCCCccEEEecccc
Q 013605 103 VRTALDTGC--GVASWGAYLWSR-NVIAMSFAPRDSHEAQVQFALERGVPAVIGVL-GT-IKM-PYASRAFDMAHCSRCL 176 (439)
Q Consensus 103 ~~~VLDIGC--G~G~~~~~La~~-~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~-d~-~~l-p~~d~sFDlV~~~~~l 176 (439)
+.+||=.|+ +.|..+..+++. |+..+-+... ....+.+.+.+....+... +. ..+ .+ .+.+|+|+...
T Consensus 143 g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~i~~~-~~~~d~vl~~~-- 216 (320)
T cd08243 143 GDTLLIRGGTSSVGLAALKLAKALGATVTATTRS---PERAALLKELGADEVVIDDGAIAEQLRAA-PGGFDKVLELV-- 216 (320)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHhcCCcEEEecCccHHHHHHHh-CCCceEEEECC--
Confidence 347888876 455666666664 4433333221 2344555555653332211 10 001 12 45699988532
Q ss_pred cccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 177 IPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 177 ~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
. ...+.++.+.|+++|.++..+.
T Consensus 217 ----~--~~~~~~~~~~l~~~g~~v~~g~ 239 (320)
T cd08243 217 ----G--TATLKDSLRHLRPGGIVCMTGL 239 (320)
T ss_pred ----C--hHHHHHHHHHhccCCEEEEEcc
Confidence 1 2467888999999999987653
No 411
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=24.32 E-value=1.4e+02 Score=30.07 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=39.1
Q ss_pred CCCCEEEEECCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC
Q 013605 101 GTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP 149 (439)
Q Consensus 101 ~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~a~i~~a~e~~~~ 149 (439)
+.+.+|.-||.|--....+|... .+.++|+.+..+.-...+.+.-+.++
T Consensus 62 g~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ahiAln~lklaA~R~Lp 112 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPAHIALNRLKLAAFRHLP 112 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhcCCceeEEEeCCHHHHHHHHHHHHHHhhcc
Confidence 34558999999988888888876 69999999888877777777766554
No 412
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=23.98 E-value=2.9e+02 Score=27.42 Aligned_cols=97 Identities=18% Similarity=0.103 Sum_probs=57.5
Q ss_pred hhcCCCCCCCCEEE--EECCCCchHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEecc--cccCCC-CC
Q 013605 94 SVIPIKNGTVRTAL--DTGCGVASWGAYLWSR-NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGT--IKMPYA-SR 165 (439)
Q Consensus 94 ~~l~~~~~~~~~VL--DIGCG~G~~~~~La~~-~v~~vdis~~dis~a~i~~a~e~~~~--~~~~~~d~--~~lp~~-d~ 165 (439)
+.....+++ +|| -..-|.|.++-+|++. +.+++.... ..+..+.|++.|.. +.+..-|. +-..+. ..
T Consensus 140 e~y~vkpGh--tVlvhaAAGGVGlll~Ql~ra~~a~tI~~as---TaeK~~~akenG~~h~I~y~~eD~v~~V~kiTngK 214 (336)
T KOG1197|consen 140 EAYNVKPGH--TVLVHAAAGGVGLLLCQLLRAVGAHTIATAS---TAEKHEIAKENGAEHPIDYSTEDYVDEVKKITNGK 214 (336)
T ss_pred HhcCCCCCC--EEEEEeccccHHHHHHHHHHhcCcEEEEEec---cHHHHHHHHhcCCcceeeccchhHHHHHHhccCCC
Confidence 333445555 555 4456788888888876 666555533 23556678888876 33333332 112233 34
Q ss_pred CccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEE
Q 013605 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (439)
Q Consensus 166 sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis 203 (439)
..|+++-+- ....+..-...|||+|+++--
T Consensus 215 GVd~vyDsv--------G~dt~~~sl~~Lk~~G~mVSf 244 (336)
T KOG1197|consen 215 GVDAVYDSV--------GKDTFAKSLAALKPMGKMVSF 244 (336)
T ss_pred Cceeeeccc--------cchhhHHHHHHhccCceEEEe
Confidence 577776432 133566677889999999863
No 413
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.40 E-value=1.2e+02 Score=30.33 Aligned_cols=62 Identities=11% Similarity=-0.043 Sum_probs=36.9
Q ss_pred EEEECCCCchHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCC-CCCccEEEec
Q 013605 106 ALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA-SRAFDMAHCS 173 (439)
Q Consensus 106 VLDIGCG~G~~~~~La~~~---v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~-d~sFDlV~~~ 173 (439)
|+|+=||.|.++.-|.+.| +.++|+++ .+.+.-+.+... .+...|+..+... -..+|+++..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~-----~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDK-----YAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCH-----HHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEec
Confidence 6899999999998888876 34566644 333333333222 3345566554321 1258999853
No 414
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=23.22 E-value=4.4e+02 Score=26.50 Aligned_cols=98 Identities=14% Similarity=0.044 Sum_probs=55.6
Q ss_pred CCEEEEECCCCchHHHHHh--hC--CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEeccc-ccCC-CCCCccEEEeccc
Q 013605 103 VRTALDTGCGVASWGAYLW--SR--NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI-KMPY-ASRAFDMAHCSRC 175 (439)
Q Consensus 103 ~~~VLDIGCG~G~~~~~La--~~--~v~~vdis~~dis~a~i~~a~e~~~~-~~~~~~d~~-~lp~-~d~sFDlV~~~~~ 175 (439)
++.|+=+| ---..+.+++ .. .+.++||+..-+ .--.++|.+.|.. +...+.|.. .+|- -.+.||+.+....
T Consensus 153 gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli-~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPp 230 (354)
T COG1568 153 GKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLI-KFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPP 230 (354)
T ss_pred CCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHH-HHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCch
Confidence 55788888 3333333332 22 588899976433 3334467777776 566666663 3441 1467998776431
Q ss_pred ccccCCChHHHHHHHHHcCCCC---eEEEEEe
Q 013605 176 LIPWGANDGRYMIEVDRVLRPG---GYWVLSG 204 (439)
Q Consensus 176 l~~~~~d~~~~L~ei~RvLkPG---G~liis~ 204 (439)
- .. .....++..=...||-- |||-++.
T Consensus 231 e-Ti-~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 231 E-TI-KALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred h-hH-HHHHHHHhccHHHhcCCCccceEeeee
Confidence 1 11 01145666666667765 8998874
No 415
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=22.92 E-value=3.3e+02 Score=24.89 Aligned_cols=33 Identities=12% Similarity=0.116 Sum_probs=23.7
Q ss_pred CCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 164 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
.+..|+++|.. +. .+.+....|+|||++++...
T Consensus 65 ~~~~D~lva~d--------~~-~~~~~~~~l~~gg~ii~ns~ 97 (197)
T PRK06274 65 EGQADLLLALE--------PA-EVARNLHFLKKGGKIIVNAY 97 (197)
T ss_pred CCCCCEEEEcC--------HH-HHHHHHhhcCCCcEEEEECC
Confidence 56899999864 22 23455667999999998753
No 416
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=22.86 E-value=3.6e+02 Score=26.64 Aligned_cols=90 Identities=19% Similarity=0.164 Sum_probs=46.9
Q ss_pred CCEEEEECCC-CchHHHHHhhC-Cc---EEEeCCccchHHHHHHHHHHcCCCeEEEEecc---ccc-CCCCCCccEEEec
Q 013605 103 VRTALDTGCG-VASWGAYLWSR-NV---IAMSFAPRDSHEAQVQFALERGVPAVIGVLGT---IKM-PYASRAFDMAHCS 173 (439)
Q Consensus 103 ~~~VLDIGCG-~G~~~~~La~~-~v---~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~---~~l-p~~d~sFDlV~~~ 173 (439)
+.+||-.|+| .|..+..+++. |. ++++.+ ....+.+.+.+....+...+. ..+ ....+.+|+|+..
T Consensus 176 ~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vid~ 250 (350)
T cd08240 176 DEPVVIIGAGGLGLMALALLKALGPANIIVVDID-----EAKLEAAKAAGADVVVNGSDPDAAKRIIKAAGGGVDAVIDF 250 (350)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHhCCcEEecCCCccHHHHHHHHhCCCCcEEEEC
Confidence 3478888764 23344444443 43 344433 234445555554322211110 001 0112268988864
Q ss_pred ccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 174 RCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 174 ~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
.. ....+.++.+.|+++|.++..+
T Consensus 251 ~g-------~~~~~~~~~~~l~~~g~~v~~g 274 (350)
T cd08240 251 VN-------NSATASLAFDILAKGGKLVLVG 274 (350)
T ss_pred CC-------CHHHHHHHHHHhhcCCeEEEEC
Confidence 21 1356889999999999998754
No 417
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.69 E-value=1.1e+02 Score=31.09 Aligned_cols=95 Identities=15% Similarity=0.073 Sum_probs=49.0
Q ss_pred EEEEEC-CCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEe-cccccCCCCCCccEEEeccccccc
Q 013605 105 TALDTG-CGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVL-GTIKMPYASRAFDMAHCSRCLIPW 179 (439)
Q Consensus 105 ~VLDIG-CG~G~~~~~La~~---~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~-d~~~lp~~d~sFDlV~~~~~l~~~ 179 (439)
.|-=+| +|-|+++..++.+ .|+++|-+...-.+ ..+.-|.+..+... +-+...--.++.|.++-.-. .+
T Consensus 184 ~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkee----a~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~--~~ 257 (360)
T KOG0023|consen 184 WVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEE----AIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVS--NL 257 (360)
T ss_pred EEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHH----HHHhcCcceeEEecCCHHHHHHHHHhhcCcceeee--ec
Confidence 443344 3589999999887 47777766432222 22223433333222 11111111233444332110 01
Q ss_pred CCChHHHHHHHHHcCCCCeEEEEEeCCCC
Q 013605 180 GANDGRYMIEVDRVLRPGGYWVLSGPPIN 208 (439)
Q Consensus 180 ~~d~~~~L~ei~RvLkPGG~liis~p~~~ 208 (439)
....+.-+.+.||++|.+++.+-|.+
T Consensus 258 ---a~~~~~~~~~~lk~~Gt~V~vg~p~~ 283 (360)
T KOG0023|consen 258 ---AEHALEPLLGLLKVNGTLVLVGLPEK 283 (360)
T ss_pred ---cccchHHHHHHhhcCCEEEEEeCcCC
Confidence 13456778899999999999875553
No 418
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=22.16 E-value=26 Score=34.35 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhc--------cCCCCCceeeeccCc
Q 013605 333 KWKKHVNAYKKINR--------LLDSGRYRNIMDMNA 361 (439)
Q Consensus 333 ~w~~~v~~y~~~~~--------~~~~~~~rnvmdm~a 361 (439)
-|...+++-..-.. ++.-+.-|||+||+|
T Consensus 139 e~~~aaeyi~~~Gn~~vilcERG~tf~y~r~~~D~~~ 175 (264)
T PRK05198 139 DMKNVVDKVREAGNDKIILCERGTSFGYNNLVVDMRG 175 (264)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCCCcCCCCeeechhh
Confidence 46666665443211 344467899999984
No 419
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=22.14 E-value=3.5e+02 Score=26.56 Aligned_cols=90 Identities=12% Similarity=0.132 Sum_probs=47.5
Q ss_pred CCEEEEECCC-CchHHHHHhhC-C--cEEEeCCccchHHHHHHHHHHcCCCeEEEEec--c-cccCCCCCCccEEEeccc
Q 013605 103 VRTALDTGCG-VASWGAYLWSR-N--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLG--T-IKMPYASRAFDMAHCSRC 175 (439)
Q Consensus 103 ~~~VLDIGCG-~G~~~~~La~~-~--v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d--~-~~lp~~d~sFDlV~~~~~ 175 (439)
+.+||=.|+| .|..+..+++. | +++++.+ +...+++++.+....+.... . ..+. ....+|+|+....
T Consensus 164 ~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~-----~~~~~~~~~~g~~~~i~~~~~~~~~~~~-~~~~~d~vi~~~g 237 (333)
T cd08296 164 GDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRG-----SDKADLARKLGAHHYIDTSKEDVAEALQ-ELGGAKLILATAP 237 (333)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCC-----hHHHHHHHHcCCcEEecCCCccHHHHHH-hcCCCCEEEECCC
Confidence 3478888853 23333344443 4 4444443 23455666666432221111 0 0010 0134898875310
Q ss_pred ccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 176 LIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 176 l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
....+.++.+.|+++|.++..+.
T Consensus 238 -------~~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 238 -------NAKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred -------chHHHHHHHHHcccCCEEEEEec
Confidence 14577889999999999997653
No 420
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=22.01 E-value=34 Score=28.26 Aligned_cols=11 Identities=36% Similarity=0.888 Sum_probs=9.2
Q ss_pred EEEECCCCchH
Q 013605 106 ALDTGCGVASW 116 (439)
Q Consensus 106 VLDIGCG~G~~ 116 (439)
-+|||||.|..
T Consensus 6 NIDIGcG~GNT 16 (124)
T PF07101_consen 6 NIDIGCGAGNT 16 (124)
T ss_pred ccccccCCCcc
Confidence 47999999964
No 421
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=21.64 E-value=4.5e+02 Score=25.25 Aligned_cols=89 Identities=24% Similarity=0.157 Sum_probs=46.7
Q ss_pred CCEEEEECCC--CchHHHHHhhC-C--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecc---ccc--CCCCCCccEEEe
Q 013605 103 VRTALDTGCG--VASWGAYLWSR-N--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT---IKM--PYASRAFDMAHC 172 (439)
Q Consensus 103 ~~~VLDIGCG--~G~~~~~La~~-~--v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~---~~l--p~~d~sFDlV~~ 172 (439)
+.+||=.|.+ .|..+..++.. + +..++.++ ...+.+.+.+....+...+. ..+ ......+|+++.
T Consensus 167 ~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 241 (342)
T cd08266 167 GETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSE-----DKLERAKELGADYVIDYRKEDFVREVRELTGKRGVDVVVE 241 (342)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH-----HHHHHHHHcCCCeEEecCChHHHHHHHHHhCCCCCcEEEE
Confidence 3478888865 44555555443 4 44443332 33344444443322221110 000 012346898886
Q ss_pred cccccccCCChHHHHHHHHHcCCCCeEEEEEe
Q 013605 173 SRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (439)
Q Consensus 173 ~~~l~~~~~d~~~~L~ei~RvLkPGG~liis~ 204 (439)
... ...+.++.+.|+++|.++..+
T Consensus 242 ~~g--------~~~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 242 HVG--------AATWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred CCc--------HHHHHHHHHHhhcCCEEEEEe
Confidence 431 235677888999999988765
No 422
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=21.19 E-value=4.3e+02 Score=25.51 Aligned_cols=90 Identities=20% Similarity=0.219 Sum_probs=49.8
Q ss_pred CCEEEEECC--CCchHHHHHhhC-Cc--EEEeCCccchHHHHHHHHHHcCCCeEEEEecc--ccc-CCCCCCccEEEecc
Q 013605 103 VRTALDTGC--GVASWGAYLWSR-NV--IAMSFAPRDSHEAQVQFALERGVPAVIGVLGT--IKM-PYASRAFDMAHCSR 174 (439)
Q Consensus 103 ~~~VLDIGC--G~G~~~~~La~~-~v--~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~--~~l-p~~d~sFDlV~~~~ 174 (439)
+.+||=.|+ +.|..+..+++. |+ ++++-+ +...+++++.+....+...+. +.+ .+....+|+|+...
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~-----~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~ 221 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTGK-----ADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDPV 221 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecC-----HHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEECC
Confidence 347888886 344555555554 54 333333 234556666565332221111 100 12234588887532
Q ss_pred cccccCCChHHHHHHHHHcCCCCeEEEEEeC
Q 013605 175 CLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (439)
Q Consensus 175 ~l~~~~~d~~~~L~ei~RvLkPGG~liis~p 205 (439)
. ...+.+..+.|+++|.++..+.
T Consensus 222 -------g-~~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 222 -------G-GKTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred -------c-HHHHHHHHHHhhcCCEEEEEee
Confidence 1 2467888999999999998764
No 423
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=21.06 E-value=1.1e+02 Score=33.82 Aligned_cols=30 Identities=13% Similarity=0.298 Sum_probs=24.1
Q ss_pred CEEEEECCCCchHHHHHhhC---C--cEEEeCCcc
Q 013605 104 RTALDTGCGVASWGAYLWSR---N--VIAMSFAPR 133 (439)
Q Consensus 104 ~~VLDIGCG~G~~~~~La~~---~--v~~vdis~~ 133 (439)
..|||+||..|.+..-..+. + |+|+|+.|.
T Consensus 46 ~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 46 HVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred chheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 47999999999998766554 2 889999775
No 424
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=21.04 E-value=5.9e+02 Score=23.08 Aligned_cols=105 Identities=18% Similarity=0.133 Sum_probs=45.4
Q ss_pred HHHHHHhhcCCCCCCCCEEEEECCCCchHHHHHhh----CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccc-ccC-
Q 013605 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWS----RNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KMP- 161 (439)
Q Consensus 88 ~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~La~----~~v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~-~lp- 161 (439)
.++...+.+....+ -|||+|=|+|..--+|.+ +.+.+.|-.-. .+... .-.+..+..+++. .+|
T Consensus 17 ~L~~a~~~v~~~~G---~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~-~hp~~------~P~~~~~ilGdi~~tl~~ 86 (160)
T PF12692_consen 17 CLNWAAAQVAGLPG---PVLELGLGNGRTYDHLREIFPDRRIYVFDRALA-CHPSS------TPPEEDLILGDIRETLPA 86 (160)
T ss_dssp HHHHHHHHTTT--S----EEEE--TTSHHHHHHHHH--SS-EEEEESS---S-GGG---------GGGEEES-HHHHHHH
T ss_pred HHHHHHHHhcCCCC---ceEEeccCCCccHHHHHHhCCCCeEEEEeeecc-cCCCC------CCchHheeeccHHHHhHH
Confidence 34445555544444 499999999986666655 46888776321 11110 0111234444431 222
Q ss_pred --CCCCCccEEEecccccccCCChH----HHHHHHHHcCCCCeEEEEE
Q 013605 162 --YASRAFDMAHCSRCLIPWGANDG----RYMIEVDRVLRPGGYWVLS 203 (439)
Q Consensus 162 --~~d~sFDlV~~~~~l~~~~~d~~----~~L~ei~RvLkPGG~liis 203 (439)
+.....-++|+-.-. +..+... .+-.-+..+|.|||+++-.
T Consensus 87 ~~~~g~~a~laHaD~G~-g~~~~d~a~a~~lspli~~~la~gGi~vS~ 133 (160)
T PF12692_consen 87 LARFGAGAALAHADIGT-GDKEKDDATAAWLSPLIAPVLAPGGIMVSG 133 (160)
T ss_dssp HHHH-S-EEEEEE-----S-HHHHHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred HHhcCCceEEEEeecCC-CCcchhHHHHHhhhHHHHHHhcCCcEEEeC
Confidence 222334445544322 2211111 2234467899999988744
No 425
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=20.68 E-value=5.7e+02 Score=26.19 Aligned_cols=89 Identities=13% Similarity=0.072 Sum_probs=47.8
Q ss_pred CCEEEEEC-CC-CchHHHHHhhC------CcEEEeCCccchHHHHHHHHHHc--------CCCeEEEEecc-ccc-----
Q 013605 103 VRTALDTG-CG-VASWGAYLWSR------NVIAMSFAPRDSHEAQVQFALER--------GVPAVIGVLGT-IKM----- 160 (439)
Q Consensus 103 ~~~VLDIG-CG-~G~~~~~La~~------~v~~vdis~~dis~a~i~~a~e~--------~~~~~~~~~d~-~~l----- 160 (439)
+.+||=+| +| .|.++..++.. .++++|.++ ...+++++. |....+..... ..+
T Consensus 176 g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~-----~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~ 250 (410)
T cd08238 176 GGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVND-----ERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLM 250 (410)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCH-----HHHHHHHHhccccccccCceEEEECCCccccHHHHHH
Confidence 45788886 34 66777777664 255565544 444555553 22211221100 111
Q ss_pred C-CCCCCccEEEecccccccCCChHHHHHHHHHcCCCCeEEEEE
Q 013605 161 P-YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (439)
Q Consensus 161 p-~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~liis 203 (439)
. .....||+|+.... ....+....+.|+++|.+++.
T Consensus 251 ~~t~g~g~D~vid~~g-------~~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 251 ELTGGQGFDDVFVFVP-------VPELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHhCCCCCCEEEEcCC-------CHHHHHHHHHHhccCCeEEEE
Confidence 0 12346898876321 145778889999988866543
No 426
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=20.34 E-value=4.6e+02 Score=27.10 Aligned_cols=81 Identities=15% Similarity=0.048 Sum_probs=43.6
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEECCCCchHHHHH----hhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc
Q 013605 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL----WSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK 159 (439)
Q Consensus 86 ~~~i~~l~~~l~~~~~~~~~VLDIGCG~G~~~~~L----a~~~--v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~ 159 (439)
..-++.+.+.+........+++=+|+| .++..+ .+.+ ++++|.++. .++...+.+....+..+|..+
T Consensus 214 ~~~l~~~~~~~~~~~~~~~~iiIiG~G--~~g~~l~~~L~~~~~~v~vid~~~~-----~~~~~~~~~~~~~~i~gd~~~ 286 (453)
T PRK09496 214 REHIRAVMSEFGRLEKPVKRVMIVGGG--NIGYYLAKLLEKEGYSVKLIERDPE-----RAEELAEELPNTLVLHGDGTD 286 (453)
T ss_pred HHHHHHHHHHhCccCCCCCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHH-----HHHHHHHHCCCCeEEECCCCC
Confidence 444555655554333345688888885 444443 3334 777777653 333344443345556666532
Q ss_pred c----CCCCCCccEEEec
Q 013605 160 M----PYASRAFDMAHCS 173 (439)
Q Consensus 160 l----p~~d~sFDlV~~~ 173 (439)
. ...-..+|+|++.
T Consensus 287 ~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 287 QELLEEEGIDEADAFIAL 304 (453)
T ss_pred HHHHHhcCCccCCEEEEC
Confidence 2 1223468888764
No 427
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=20.06 E-value=3.4e+02 Score=26.71 Aligned_cols=86 Identities=14% Similarity=0.143 Sum_probs=46.0
Q ss_pred CEEEEECCCC--chHHHHHhhCC----cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccccCCCCCCccEEEeccccc
Q 013605 104 RTALDTGCGV--ASWGAYLWSRN----VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (439)
Q Consensus 104 ~~VLDIGCG~--G~~~~~La~~~----v~~vdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~d~sFDlV~~~~~l~ 177 (439)
.+|.=||+|. +.++..|...+ |.++|.++ ...+.+.+.+...... .+.... -...|+|+..-..
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~-----~~~~~a~~~g~~~~~~-~~~~~~---~~~aDvViiavp~- 76 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA-----ETRARARELGLGDRVT-TSAAEA---VKGADLVILCVPV- 76 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH-----HHHHHHHhCCCCceec-CCHHHH---hcCCCEEEECCCH-
Confidence 4688888885 34555666655 45555543 3334455554322111 111111 1347988875421
Q ss_pred ccCCChHHHHHHHHHcCCCCeEEEE
Q 013605 178 PWGANDGRYMIEVDRVLRPGGYWVL 202 (439)
Q Consensus 178 ~~~~d~~~~L~ei~RvLkPGG~lii 202 (439)
.....++.++...+++|..++.
T Consensus 77 ---~~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 77 ---GASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred ---HHHHHHHHHHHhhCCCCCEEEe
Confidence 1125567777778888876554
Done!