Query 013607
Match_columns 439
No_of_seqs 309 out of 1945
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 05:33:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013607.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013607hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02851 3-hydroxyisobutyryl-C 100.0 1.9E-68 4.1E-73 541.0 38.9 348 64-432 40-391 (407)
2 KOG1684 Enoyl-CoA hydratase [L 100.0 5.9E-69 1.3E-73 516.4 30.1 356 65-439 37-393 (401)
3 PLN02988 3-hydroxyisobutyryl-C 100.0 4.2E-68 9.2E-73 537.0 36.5 346 66-432 9-358 (381)
4 PLN02157 3-hydroxyisobutyryl-C 100.0 3.4E-67 7.3E-72 532.1 37.0 353 65-438 36-392 (401)
5 PRK05617 3-hydroxyisobutyryl-C 100.0 9.4E-65 2E-69 508.6 32.8 340 66-429 3-342 (342)
6 PLN02874 3-hydroxyisobutyryl-C 100.0 1.9E-64 4.2E-69 512.2 35.4 346 63-431 8-357 (379)
7 KOG1680 Enoyl-CoA hydratase [L 100.0 1.2E-54 2.6E-59 406.4 21.0 254 66-412 36-289 (290)
8 PRK05862 enoyl-CoA hydratase; 100.0 1.6E-53 3.4E-58 412.7 28.8 254 65-412 3-256 (257)
9 PRK05980 enoyl-CoA hydratase; 100.0 2.7E-53 5.9E-58 411.7 28.5 257 67-410 4-260 (260)
10 PRK05809 3-hydroxybutyryl-CoA 100.0 3E-53 6.5E-58 411.4 28.6 259 63-412 1-259 (260)
11 PRK09076 enoyl-CoA hydratase; 100.0 4.2E-53 9.1E-58 409.8 29.3 254 67-412 4-257 (258)
12 PRK06127 enoyl-CoA hydratase; 100.0 3.5E-53 7.7E-58 412.7 28.7 261 64-413 9-269 (269)
13 PLN02600 enoyl-CoA hydratase 100.0 2.5E-53 5.4E-58 409.7 27.3 250 74-413 2-251 (251)
14 PRK08150 enoyl-CoA hydratase; 100.0 6.8E-53 1.5E-57 407.5 28.8 253 66-412 2-254 (255)
15 PRK07657 enoyl-CoA hydratase; 100.0 5.4E-53 1.2E-57 409.6 28.1 258 66-413 3-260 (260)
16 PRK06142 enoyl-CoA hydratase; 100.0 4.9E-53 1.1E-57 412.5 27.8 261 65-412 5-272 (272)
17 PRK09674 enoyl-CoA hydratase-i 100.0 6.7E-53 1.4E-57 407.7 28.4 252 67-412 3-254 (255)
18 PRK06494 enoyl-CoA hydratase; 100.0 7E-53 1.5E-57 408.5 28.6 256 63-412 1-258 (259)
19 PRK08140 enoyl-CoA hydratase; 100.0 1.4E-52 3E-57 407.2 28.7 260 64-412 2-261 (262)
20 PRK08138 enoyl-CoA hydratase; 100.0 1.7E-52 3.7E-57 406.2 29.2 256 64-412 5-260 (261)
21 PLN02664 enoyl-CoA hydratase/d 100.0 1.3E-52 2.8E-57 410.0 28.4 254 73-412 14-274 (275)
22 PRK08139 enoyl-CoA hydratase; 100.0 1.9E-52 4.2E-57 406.8 28.9 258 63-412 8-265 (266)
23 PRK07658 enoyl-CoA hydratase; 100.0 2E-52 4.4E-57 405.0 28.2 254 67-412 3-256 (257)
24 TIGR02280 PaaB1 phenylacetate 100.0 1.9E-52 4.2E-57 404.8 27.9 254 69-412 2-255 (256)
25 PRK07799 enoyl-CoA hydratase; 100.0 2.9E-52 6.3E-57 405.1 28.9 259 65-413 4-263 (263)
26 PRK05995 enoyl-CoA hydratase; 100.0 3E-52 6.6E-57 404.8 28.2 260 64-413 2-262 (262)
27 PRK08252 enoyl-CoA hydratase; 100.0 4.2E-52 9.1E-57 401.9 28.8 251 66-412 3-253 (254)
28 PRK06143 enoyl-CoA hydratase; 100.0 3.5E-52 7.5E-57 402.8 27.7 251 64-404 4-254 (256)
29 PRK09245 enoyl-CoA hydratase; 100.0 3.7E-52 8.1E-57 405.0 27.9 259 67-412 4-265 (266)
30 PRK06563 enoyl-CoA hydratase; 100.0 3E-52 6.4E-57 403.3 26.9 252 69-412 2-254 (255)
31 PRK08258 enoyl-CoA hydratase; 100.0 5.1E-52 1.1E-56 406.2 28.7 258 67-412 18-276 (277)
32 PRK07468 enoyl-CoA hydratase; 100.0 4.7E-52 1E-56 403.4 28.1 259 65-412 3-261 (262)
33 PRK05981 enoyl-CoA hydratase; 100.0 5.7E-52 1.2E-56 403.7 28.2 263 63-412 1-265 (266)
34 TIGR03210 badI 2-ketocyclohexa 100.0 5.6E-52 1.2E-56 401.4 27.5 255 65-412 1-255 (256)
35 TIGR01929 menB naphthoate synt 100.0 5.5E-52 1.2E-56 402.2 27.3 257 66-412 2-258 (259)
36 PRK05674 gamma-carboxygeranoyl 100.0 5.6E-52 1.2E-56 403.3 26.9 260 64-412 3-263 (265)
37 PRK07659 enoyl-CoA hydratase; 100.0 8.6E-52 1.9E-56 401.1 27.9 255 65-412 5-259 (260)
38 PRK11423 methylmalonyl-CoA dec 100.0 1E-51 2.2E-56 400.6 27.5 258 63-412 1-260 (261)
39 PRK07327 enoyl-CoA hydratase; 100.0 9.5E-52 2.1E-56 402.4 27.4 260 63-412 8-267 (268)
40 PRK07511 enoyl-CoA hydratase; 100.0 1.7E-51 3.7E-56 399.1 28.6 255 68-411 5-259 (260)
41 PRK03580 carnitinyl-CoA dehydr 100.0 1.6E-51 3.5E-56 399.4 28.3 253 67-412 4-260 (261)
42 PRK06210 enoyl-CoA hydratase; 100.0 1E-51 2.2E-56 403.2 26.7 263 63-412 2-271 (272)
43 PRK06144 enoyl-CoA hydratase; 100.0 1.5E-51 3.3E-56 399.7 27.5 255 64-412 6-261 (262)
44 PRK06495 enoyl-CoA hydratase; 100.0 2.2E-51 4.7E-56 397.6 28.0 255 64-412 2-256 (257)
45 PRK09120 p-hydroxycinnamoyl Co 100.0 2.1E-51 4.6E-56 401.2 28.0 253 64-402 6-261 (275)
46 PRK05864 enoyl-CoA hydratase; 100.0 1.9E-51 4.1E-56 402.0 27.3 264 64-413 7-275 (276)
47 PRK08260 enoyl-CoA hydratase; 100.0 2.8E-51 6E-56 404.5 27.5 264 64-413 2-278 (296)
48 PRK07396 dihydroxynaphthoic ac 100.0 5.3E-51 1.1E-55 398.1 27.8 258 64-412 11-268 (273)
49 PRK06688 enoyl-CoA hydratase; 100.0 4.7E-51 1E-55 395.9 27.0 254 66-412 5-258 (259)
50 PLN02888 enoyl-CoA hydratase 100.0 8.7E-51 1.9E-55 394.8 28.2 259 60-412 3-263 (265)
51 PRK07509 enoyl-CoA hydratase; 100.0 1.4E-50 3E-55 393.2 27.8 256 65-411 2-261 (262)
52 PRK07260 enoyl-CoA hydratase; 100.0 1.4E-50 2.9E-55 391.7 26.9 252 66-404 2-253 (255)
53 COG1024 CaiD Enoyl-CoA hydrata 100.0 2.3E-50 5E-55 390.5 27.2 253 65-410 4-257 (257)
54 PRK06072 enoyl-CoA hydratase; 100.0 6.1E-50 1.3E-54 385.5 28.8 247 68-413 2-248 (248)
55 PRK08259 enoyl-CoA hydratase; 100.0 2.2E-50 4.7E-55 389.8 25.7 249 67-409 4-252 (254)
56 PLN02921 naphthoate synthase 100.0 4.6E-50 1E-54 399.0 28.7 259 64-412 63-322 (327)
57 TIGR03189 dienoyl_CoA_hyt cycl 100.0 6.7E-50 1.4E-54 385.7 27.8 246 68-412 3-250 (251)
58 PRK05870 enoyl-CoA hydratase; 100.0 5.9E-50 1.3E-54 385.9 25.8 244 66-401 3-247 (249)
59 PRK12478 enoyl-CoA hydratase; 100.0 5.8E-50 1.2E-54 394.9 25.7 263 64-416 3-284 (298)
60 PRK07938 enoyl-CoA hydratase; 100.0 8.2E-50 1.8E-54 384.7 25.9 245 70-408 5-249 (249)
61 PRK06023 enoyl-CoA hydratase; 100.0 8.3E-50 1.8E-54 385.3 26.0 243 67-401 4-249 (251)
62 PRK07854 enoyl-CoA hydratase; 100.0 1E-49 2.2E-54 382.8 26.4 241 68-412 2-242 (243)
63 PRK07827 enoyl-CoA hydratase; 100.0 2E-49 4.2E-54 384.7 27.6 255 65-411 5-259 (260)
64 PLN03214 probable enoyl-CoA hy 100.0 1.1E-49 2.5E-54 389.3 25.7 253 63-402 8-262 (278)
65 PRK07112 polyketide biosynthes 100.0 3.8E-49 8.3E-54 381.4 27.3 253 64-412 2-254 (255)
66 PRK08321 naphthoate synthase; 100.0 5.3E-49 1.1E-53 388.9 27.0 262 65-412 22-297 (302)
67 PF00378 ECH: Enoyl-CoA hydrat 100.0 1.3E-49 2.8E-54 382.7 20.3 244 70-404 2-245 (245)
68 PRK07110 polyketide biosynthes 100.0 4.2E-48 9.2E-53 372.9 26.8 245 64-401 3-247 (249)
69 PRK06190 enoyl-CoA hydratase; 100.0 8.4E-48 1.8E-52 372.2 27.4 244 63-398 1-246 (258)
70 PRK08184 benzoyl-CoA-dihydrodi 100.0 5E-47 1.1E-51 398.7 25.0 261 64-414 258-549 (550)
71 TIGR03222 benzo_boxC benzoyl-C 100.0 8.6E-47 1.9E-51 395.6 25.9 259 65-414 255-545 (546)
72 PRK05869 enoyl-CoA hydratase; 100.0 2.5E-45 5.3E-50 347.6 22.5 187 65-260 2-192 (222)
73 PRK08290 enoyl-CoA hydratase; 100.0 5.3E-45 1.2E-49 358.1 25.3 244 63-392 1-262 (288)
74 KOG1679 Enoyl-CoA hydratase [L 100.0 5.8E-46 1.3E-50 334.1 15.7 262 66-413 27-291 (291)
75 PRK11730 fadB multifunctional 100.0 2.1E-44 4.6E-49 392.5 26.9 289 67-403 7-296 (715)
76 PRK08788 enoyl-CoA hydratase; 100.0 1.3E-43 2.7E-48 346.8 27.0 253 63-401 12-274 (287)
77 PRK08272 enoyl-CoA hydratase; 100.0 1.1E-43 2.5E-48 351.3 23.5 190 64-260 8-217 (302)
78 TIGR03200 dearomat_oah 6-oxocy 100.0 4.5E-43 9.7E-48 346.5 27.3 286 77-402 38-327 (360)
79 KOG1681 Enoyl-CoA isomerase [L 100.0 2.3E-44 5.1E-49 326.6 15.5 265 64-411 17-290 (292)
80 PRK11154 fadJ multifunctional 100.0 1E-42 2.2E-47 379.3 30.3 284 68-404 7-294 (708)
81 PRK06213 enoyl-CoA hydratase; 100.0 4.1E-43 8.9E-48 334.2 22.1 224 66-383 3-227 (229)
82 TIGR02440 FadJ fatty oxidation 100.0 5.9E-42 1.3E-46 372.5 30.3 279 71-404 5-289 (699)
83 TIGR02437 FadB fatty oxidation 100.0 5.2E-42 1.1E-46 373.1 27.9 291 67-404 7-297 (714)
84 COG0447 MenB Dihydroxynaphthoi 100.0 7.1E-43 1.5E-47 314.7 12.9 261 63-412 15-277 (282)
85 TIGR02441 fa_ox_alpha_mit fatt 100.0 1.5E-40 3.3E-45 362.3 27.4 296 62-404 9-321 (737)
86 PLN02267 enoyl-CoA hydratase/i 100.0 2.8E-40 6.1E-45 316.4 21.5 185 68-260 2-190 (239)
87 KOG0016 Enoyl-CoA hydratase/is 100.0 4.7E-39 1E-43 298.8 22.5 257 63-404 4-263 (266)
88 KOG1682 Enoyl-CoA isomerase [L 100.0 2.2E-38 4.8E-43 283.0 19.6 248 74-412 39-286 (287)
89 cd06558 crotonase-like Crotona 100.0 4E-38 8.6E-43 292.0 19.6 192 69-267 2-193 (195)
90 TIGR03222 benzo_boxC benzoyl-C 100.0 1.5E-37 3.2E-42 326.1 21.0 201 63-268 8-225 (546)
91 PRK08184 benzoyl-CoA-dihydrodi 100.0 1E-36 2.2E-41 320.8 21.1 201 63-268 12-229 (550)
92 PF13766 ECH_C: 2-enoyl-CoA Hy 99.9 7.2E-25 1.6E-29 186.8 11.5 117 295-428 2-118 (118)
93 cd07014 S49_SppA Signal peptid 99.8 8.7E-19 1.9E-23 160.4 11.2 142 94-259 22-173 (177)
94 cd07020 Clp_protease_NfeD_1 No 99.8 3.4E-18 7.4E-23 157.9 12.9 145 78-256 2-166 (187)
95 cd07019 S49_SppA_1 Signal pept 99.6 1.5E-15 3.3E-20 142.9 10.1 159 76-257 1-205 (211)
96 cd07022 S49_Sppa_36K_type Sign 99.5 2.8E-13 6.1E-18 127.8 13.6 98 83-203 13-111 (214)
97 TIGR00705 SppA_67K signal pept 99.5 9.1E-14 2E-18 148.8 10.4 158 74-257 307-513 (584)
98 cd00394 Clp_protease_like Case 99.5 3.7E-13 8.1E-18 121.1 12.3 135 91-252 8-161 (161)
99 cd07016 S14_ClpP_1 Caseinolyti 99.4 1.9E-12 4E-17 116.6 12.0 130 94-252 15-160 (160)
100 cd07023 S49_Sppa_N_C Signal pe 99.4 2.2E-12 4.7E-17 121.2 12.3 101 77-201 2-102 (208)
101 TIGR00706 SppA_dom signal pept 99.3 2.6E-11 5.5E-16 113.9 14.1 149 77-259 2-199 (207)
102 cd07021 Clp_protease_NfeD_like 99.2 2.4E-10 5.3E-15 104.5 12.2 142 78-255 2-171 (178)
103 cd07018 S49_SppA_67K_type Sign 99.2 1.6E-10 3.5E-15 109.6 10.7 91 90-203 25-115 (222)
104 KOG1683 Hydroxyacyl-CoA dehydr 98.8 4.8E-09 1E-13 103.5 5.9 171 76-255 66-240 (380)
105 cd07015 Clp_protease_NfeD Nodu 98.6 1E-06 2.2E-11 80.0 12.7 139 90-255 9-165 (172)
106 cd07013 S14_ClpP Caseinolytic 98.5 8.1E-07 1.8E-11 80.2 11.3 136 91-252 9-162 (162)
107 PRK10949 protease 4; Provision 98.4 3.1E-06 6.7E-11 91.3 14.8 164 74-265 325-539 (618)
108 PRK00277 clpP ATP-dependent Cl 98.4 2.1E-06 4.6E-11 80.1 10.2 139 89-255 38-196 (200)
109 PRK12319 acetyl-CoA carboxylas 98.4 8.3E-05 1.8E-09 71.8 21.3 139 88-255 76-214 (256)
110 CHL00198 accA acetyl-CoA carbo 98.3 0.00013 2.9E-09 72.1 20.2 139 88-255 132-270 (322)
111 cd07017 S14_ClpP_2 Caseinolyti 98.2 7.9E-06 1.7E-10 74.4 10.3 134 91-252 18-171 (171)
112 PRK12553 ATP-dependent Clp pro 98.2 1.4E-05 3.1E-10 75.0 11.8 136 90-255 43-202 (207)
113 TIGR00513 accA acetyl-CoA carb 98.2 0.00026 5.6E-09 70.1 20.6 139 88-255 129-267 (316)
114 PRK05724 acetyl-CoA carboxylas 98.2 0.00033 7E-09 69.5 20.6 139 88-255 129-267 (319)
115 PLN03230 acetyl-coenzyme A car 98.2 0.00046 9.9E-09 70.2 21.6 138 89-255 200-337 (431)
116 PLN03229 acetyl-coenzyme A car 98.1 0.00043 9.4E-09 74.5 20.9 139 88-255 220-358 (762)
117 PF00574 CLP_protease: Clp pro 98.1 1E-05 2.3E-10 74.2 7.7 137 91-255 25-181 (182)
118 PF01972 SDH_sah: Serine dehyd 98.1 0.00013 2.9E-09 70.0 14.7 109 74-213 58-166 (285)
119 PRK11778 putative inner membra 98.0 3.5E-05 7.7E-10 76.8 11.1 156 74-259 89-290 (330)
120 PRK14512 ATP-dependent Clp pro 98.0 6.2E-05 1.4E-09 70.0 12.0 138 90-255 31-188 (197)
121 COG0616 SppA Periplasmic serin 98.0 8.5E-05 1.8E-09 74.3 12.5 137 96-258 82-265 (317)
122 CHL00028 clpP ATP-dependent Cl 97.9 0.00012 2.6E-09 68.3 11.7 138 90-256 38-197 (200)
123 TIGR00493 clpP ATP-dependent C 97.9 0.00017 3.7E-09 66.8 12.0 137 90-254 34-190 (191)
124 TIGR03133 malonate_beta malona 97.8 0.0013 2.8E-08 64.1 16.9 152 77-257 61-219 (274)
125 PRK12551 ATP-dependent Clp pro 97.7 0.00051 1.1E-08 63.8 11.5 139 90-256 33-191 (196)
126 PRK14514 ATP-dependent Clp pro 97.6 0.00063 1.4E-08 64.3 11.5 138 89-255 61-219 (221)
127 PRK14513 ATP-dependent Clp pro 97.6 0.00085 1.9E-08 62.5 12.1 139 89-257 34-194 (201)
128 PRK07189 malonate decarboxylas 97.5 0.0014 3E-08 64.6 12.9 152 77-257 70-228 (301)
129 TIGR03134 malonate_gamma malon 97.4 0.0095 2.1E-07 57.0 15.9 158 75-258 31-192 (238)
130 TIGR00515 accD acetyl-CoA carb 97.3 0.0071 1.5E-07 59.4 15.2 152 77-264 122-274 (285)
131 PRK05654 acetyl-CoA carboxylas 97.3 0.0092 2E-07 58.8 15.6 151 78-264 123-275 (292)
132 PF01343 Peptidase_S49: Peptid 97.3 0.00018 3.9E-09 64.3 3.4 97 161-260 2-145 (154)
133 TIGR00705 SppA_67K signal pept 97.1 0.0053 1.2E-07 66.4 12.5 86 94-201 76-161 (584)
134 CHL00174 accD acetyl-CoA carbo 97.1 0.019 4.1E-07 56.4 14.8 153 77-265 135-289 (296)
135 PRK12552 ATP-dependent Clp pro 97.0 0.014 3.1E-07 55.0 12.8 144 90-255 48-214 (222)
136 COG1030 NfeD Membrane-bound se 96.9 0.018 3.9E-07 59.1 13.6 149 74-254 25-187 (436)
137 COG0740 ClpP Protease subunit 96.6 0.025 5.5E-07 52.3 11.3 98 157-257 77-194 (200)
138 TIGR01117 mmdA methylmalonyl-C 96.6 0.064 1.4E-06 57.2 15.4 156 80-260 319-486 (512)
139 PRK10949 protease 4; Provision 96.2 0.05 1.1E-06 59.2 12.3 86 94-201 95-180 (618)
140 PLN02820 3-methylcrotonyl-CoA 96.2 0.087 1.9E-06 56.7 13.8 110 77-200 131-241 (569)
141 PF01039 Carboxyl_trans: Carbo 96.0 0.07 1.5E-06 56.7 12.1 141 77-257 59-207 (493)
142 COG0825 AccA Acetyl-CoA carbox 96.0 0.041 8.8E-07 53.4 9.1 87 157-255 180-266 (317)
143 TIGR01117 mmdA methylmalonyl-C 95.6 0.14 3.1E-06 54.5 12.2 106 77-200 84-190 (512)
144 COG0777 AccD Acetyl-CoA carbox 95.1 0.62 1.3E-05 45.0 13.5 148 77-260 124-272 (294)
145 PLN02157 3-hydroxyisobutyryl-C 93.3 0.14 3E-06 52.9 5.5 68 336-415 228-298 (401)
146 COG4799 Acetyl-CoA carboxylase 92.1 0.56 1.2E-05 49.6 8.2 96 83-196 99-194 (526)
147 PLN02820 3-methylcrotonyl-CoA 90.5 2.9 6.3E-05 45.2 11.9 146 89-259 380-544 (569)
148 PF01039 Carboxyl_trans: Carbo 84.7 4.1 8.9E-05 43.4 8.7 156 80-260 298-469 (493)
149 KOG0840 ATP-dependent Clp prot 80.0 13 0.00029 35.8 9.1 134 90-254 100-256 (275)
150 PF02601 Exonuc_VII_L: Exonucl 77.7 4.5 9.8E-05 40.3 5.8 80 92-196 53-136 (319)
151 TIGR00237 xseA exodeoxyribonuc 77.1 4.2 9.2E-05 42.5 5.5 81 91-196 167-248 (432)
152 COG0074 SucD Succinyl-CoA synt 71.3 11 0.00024 36.8 6.3 52 100-177 189-240 (293)
153 PRK00286 xseA exodeoxyribonucl 68.9 7.7 0.00017 40.5 5.2 78 93-196 175-253 (438)
154 COG1570 XseA Exonuclease VII, 68.0 8.4 0.00018 40.1 5.0 37 156-195 216-253 (440)
155 COG4799 Acetyl-CoA carboxylase 66.4 41 0.00089 36.0 9.8 160 77-258 326-497 (526)
156 PF13607 Succ_CoA_lig: Succiny 65.3 14 0.0003 32.3 5.2 52 98-176 41-92 (138)
157 PTZ00187 succinyl-CoA syntheta 56.3 22 0.00049 35.5 5.5 23 99-121 212-234 (317)
158 PLN02522 ATP citrate (pro-S)-l 55.3 29 0.00062 38.0 6.5 52 99-177 210-262 (608)
159 KOG0540 3-Methylcrotonyl-CoA c 51.2 89 0.0019 32.7 8.8 150 80-259 353-511 (536)
160 PF06833 MdcE: Malonate decarb 38.9 1.7E+02 0.0037 28.0 8.1 153 88-265 40-197 (234)
161 TIGR02717 AcCoA-syn-alpha acet 34.8 32 0.00069 36.2 2.9 84 97-208 189-272 (447)
162 smart00250 PLEC Plectin repeat 34.5 33 0.00072 22.7 2.0 18 233-251 18-35 (38)
163 PLN00125 Succinyl-CoA ligase [ 32.0 92 0.002 31.0 5.5 13 164-176 232-244 (300)
164 PF00549 Ligase_CoA: CoA-ligas 28.7 1.4E+02 0.003 26.6 5.5 28 91-121 56-83 (153)
165 TIGR01019 sucCoAalpha succinyl 27.0 1.1E+02 0.0024 30.1 5.1 24 98-121 185-208 (286)
166 COG0793 Prc Periplasmic protea 27.0 60 0.0013 33.7 3.4 97 77-186 205-308 (406)
167 PRK05678 succinyl-CoA syntheta 25.8 1.2E+02 0.0027 29.9 5.2 14 164-177 226-239 (291)
168 PF00681 Plectin: Plectin repe 25.6 27 0.00059 24.1 0.4 20 232-252 17-36 (45)
169 PF06744 DUF1215: Protein of u 24.8 3.6E+02 0.0079 22.7 7.3 25 406-431 54-78 (125)
170 PRK06091 membrane protein FdrA 23.6 2.1E+02 0.0046 30.9 6.7 22 156-177 270-291 (555)
171 PLN00049 carboxyl-terminal pro 22.8 30 0.00064 35.7 0.2 102 75-186 194-300 (389)
172 COG3660 Predicted nucleoside-d 22.4 3.9E+02 0.0084 26.4 7.5 118 77-197 129-255 (329)
173 PF03464 eRF1_2: eRF1 domain 2 22.4 1.4E+02 0.003 25.5 4.3 45 77-121 25-83 (133)
174 PF09905 DUF2132: Uncharacteri 21.4 1.5E+02 0.0033 22.2 3.6 29 304-341 34-62 (64)
No 1
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.9e-68 Score=540.96 Aligned_cols=348 Identities=34% Similarity=0.603 Sum_probs=305.0
Q ss_pred cccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCC
Q 013607 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (439)
Q Consensus 64 ~~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~ 143 (439)
..+.|.++. .+++++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++..... ...
T Consensus 40 ~~~~v~~e~-~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~G-kaFcAGgDl~~l~~~~~-~~~ 116 (407)
T PLN02851 40 LQDQVLVEG-RAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSG-RAFCSGADVVSLYHLIN-EGN 116 (407)
T ss_pred CCCCeEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccCCcCHHHHHhhcc-ccc
Confidence 345677875 789999999999999999999999999999999999999999999998 89999999999865321 111
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCc
Q 013607 144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG 223 (439)
Q Consensus 144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~ 223 (439)
.+....++..++.+.+.|.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++|.
T Consensus 117 ~~~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~ 196 (407)
T PLN02851 117 VEECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGY 196 (407)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCH
Confidence 23345577888889999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred hHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCC-CCCchhhcchhHH
Q 013607 224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDP-EGEAPLKLLLPQI 302 (439)
Q Consensus 224 ~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~i 302 (439)
.+++|+|||+.++ |+||+++||++++||++++..+.+.+.+.. ..+...+...|++|.... ++...+......|
T Consensus 197 --~g~~L~LTG~~i~-a~eA~~~GLa~~~v~~~~l~~l~~~l~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I 271 (407)
T PLN02851 197 --LGEYLALTGQKLN-GVEMIACGLATHYCLNARLPLIEERLGKLL--TDDPAVIEDSLAQYGDLVYPDKSSVLHKIETI 271 (407)
T ss_pred --HHHHHHHhCCcCC-HHHHHHCCCceeecCHhhHHHHHHHHHhhc--cCCHHHHHHHHHHhccccCCCcccHHHHHHHH
Confidence 6999999999999 999999999999999999876655554432 334566889999997542 2234455568899
Q ss_pred HhhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHH
Q 013607 303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYR 382 (439)
Q Consensus 303 ~~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~ 382 (439)
++||+.+ |+++|+++|+.+.+.. ..+||+++++.|.++||+|+++|+++++++. ..++.+|+++|++
T Consensus 272 ~~~F~~~-sv~~I~~~L~~~~~~~---~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~---------~~sl~e~l~~E~~ 338 (407)
T PLN02851 272 DKCFGHD-TVEEIIEALENEAASS---YDEWCKKALKKIKEASPLSLKVTLQSIREGR---------FQTLDQCLAREYR 338 (407)
T ss_pred HHHhCCC-CHHHHHHHHHhccccc---chHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---------cCCHHHHHHHHHH
Confidence 9999988 9999999999853210 1489999999999999999999999999987 5799999999999
Q ss_pred HHHhhC---CCChHHHHHHHHHhCCCCCCCCCCCCcCCCCHHHHHhcccCCCC
Q 013607 383 VALRSS---LRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGT 432 (439)
Q Consensus 383 ~~~~~~---~~~d~~egv~a~l~~K~r~P~w~~~~~~~v~~~~v~~~f~~~~~ 432 (439)
+..+++ .++||.|||||.|+||+++|+|+|++++||+++.|++||.|++.
T Consensus 339 l~~~~~~~~~~~DF~EGVRA~LIDKd~~P~W~p~sl~~V~~~~v~~~f~~~~~ 391 (407)
T PLN02851 339 ISLCGVSKWVSGDFCEGVRARLVDKDFAPKWDPPSLGEVSKDMVDCYFTPLDE 391 (407)
T ss_pred HHHHHHhcCccchHHHHHHHHhcCCCCCCCCCCCChhhCCHHHHHHHhCCCCC
Confidence 999987 48999999999999999999999999999999999999999854
No 2
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=5.9e-69 Score=516.43 Aligned_cols=356 Identities=51% Similarity=0.809 Sum_probs=327.2
Q ss_pred ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCC
Q 013607 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (439)
Q Consensus 65 ~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 144 (439)
.+.|.++. ++...+||||||+++||||.+|+.++...|..|+.++.+++||+.|+|+++||+|+|++...... .+...
T Consensus 37 ~~~VL~e~-~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~-~d~~~ 114 (401)
T KOG1684|consen 37 KDQVLVEG-KGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESI-KDKET 114 (401)
T ss_pred CCceEEec-CCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHh-hcCCc
Confidence 46688885 79999999999999999999999999999999999999999999999889999999999766543 34455
Q ss_pred CchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCch
Q 013607 145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG 224 (439)
Q Consensus 145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~ 224 (439)
.....+|+..|.+.+.|.++.||+||.+||.+||||++|++..-||||||++.|+|||+.||++||+|++++++|++|
T Consensus 115 ~~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg-- 192 (401)
T KOG1684|consen 115 PEVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG-- 192 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc--
Confidence 677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCC-chhhcchhHHH
Q 013607 225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGE-APLKLLLPQIT 303 (439)
Q Consensus 225 ~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~i~ 303 (439)
..+.||.|||.+++ +.||+..||++|+||++++..+.++|. ...+.+|...|++.|++|...++++ ..+....++|+
T Consensus 193 ~lg~YLgLTG~rl~-GaD~~~~GlATHyv~S~~l~~Lee~L~-~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~ 270 (401)
T KOG1684|consen 193 YLGLYLGLTGQRLS-GADALRCGLATHYVPSEKLPSLEERLL-KNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVIN 270 (401)
T ss_pred HHHHhhhhccceec-chHHHHhcchhhccchhhhhHHHHHHh-hhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHH
Confidence 48999999999999 899999999999999999999999998 4677889899999999999886544 44567899999
Q ss_pred hhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHH
Q 013607 304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV 383 (439)
Q Consensus 304 ~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~ 383 (439)
+||+.+ ||+||++.|++.++ ..++.+||+++++.|.+.||+|+++|.++++.+. ..++.+|+.+|+++
T Consensus 271 ~~Fs~~-tVeeIie~lk~~q~--~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs---------~~tl~~~l~~Eyr~ 338 (401)
T KOG1684|consen 271 KCFSAN-TVEEIIEALKNYQQ--SADGSEWAKETLKTLKKMSPTSLKVTLRQIREGS---------KQTLDQCLTMEYRL 338 (401)
T ss_pred Hhhccc-cHHHHHHHHHHHhh--hhhHHHHHHHHHHHHhhcCCchHHHHHHHHHhhh---------HHHHHHHHHHHHHH
Confidence 999999 99999999988775 3345899999999999999999999999999887 68999999999999
Q ss_pred HHhhCCCChHHHHHHHHHhCCCCCCCCCCCCcCCCCHHHHHhcccCCCCCCCCCCC
Q 013607 384 ALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGTGVEELKV 439 (439)
Q Consensus 384 ~~~~~~~~d~~egv~a~l~~K~r~P~w~~~~~~~v~~~~v~~~f~~~~~~~~~~~~ 439 (439)
..+...++||.||+||.|+||+++|+|+|.+++||++++|+.+|.|.+. +.++|+
T Consensus 339 s~~~~~~~DF~EGvRA~LIDKd~~PKW~p~~l~~V~e~~Vdn~F~~~p~-~~eLkl 393 (401)
T KOG1684|consen 339 SLRMLMRGDFCEGVRAVLIDKDQNPKWDPASLADVTEDEVDNYFKPLPS-KSELKL 393 (401)
T ss_pred HHHHhhccchhhhhhheeecCCcCCCCCCcchhhcCHHHHHHhccCCCC-cccccC
Confidence 9999999999999999999999999999999999999999999999543 566653
No 3
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=4.2e-68 Score=537.05 Aligned_cols=346 Identities=37% Similarity=0.644 Sum_probs=300.3
Q ss_pred cceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCC
Q 013607 66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP 145 (439)
Q Consensus 66 ~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 145 (439)
..|.++. +++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|.| ++||+|+|++++..... .....
T Consensus 9 ~~v~~~~-~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G-~~FcAGgDl~~l~~~~~-~~~~~ 85 (381)
T PLN02988 9 SQVLVEE-KSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHG-RAFCAGGDVAAVVRDIE-QGNWR 85 (381)
T ss_pred CceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCC-CCcccCcCHHHHHhhhc-ccchh
Confidence 4577774 799999999999999999999999999999999999999999999998 79999999999864211 11111
Q ss_pred chHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchH
Q 013607 146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS 225 (439)
Q Consensus 146 ~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~ 225 (439)
....++...+.+.+.|.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++|.
T Consensus 86 ~~~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~-- 163 (381)
T PLN02988 86 LGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF-- 163 (381)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH--
Confidence 223456666677788999999999999999999999999999999999999999999999999999999999999994
Q ss_pred HHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCC-CCchhhcchhHHHh
Q 013607 226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPE-GEAPLKLLLPQITS 304 (439)
Q Consensus 226 ~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~i~~ 304 (439)
.+++|+|||++++ |+||+++||||++||++++...+.++++. ...+...+...++.+...+. .+..+......|++
T Consensus 164 ~~~~l~LTG~~i~-a~eA~~~GLv~~vv~~~~l~~~~~~la~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 240 (381)
T PLN02988 164 FGEYVGLTGARLD-GAEMLACGLATHFVPSTRLTALEADLCRI--GSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDR 240 (381)
T ss_pred HHHHHHHcCCCCC-HHHHHHcCCceEecCHhHHHHHHHHHHHh--hccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH
Confidence 7999999999999 99999999999999999999988888743 23444557777777765432 12334446889999
Q ss_pred hcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHH
Q 013607 305 CFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVA 384 (439)
Q Consensus 305 ~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~ 384 (439)
||+.+ |++||+++|+++.+.. ..+|++++++.|.++||+|+++|+++++++. ..++.+|+++|+++.
T Consensus 241 ~f~~~-~~~~i~~~L~~~~~~~---~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~---------~~sl~e~~~~e~~~~ 307 (381)
T PLN02988 241 CFSRR-TVEEIISALEREATQE---ADGWISATIQALKKASPASLKISLRSIREGR---------LQGVGQCLIREYRMV 307 (381)
T ss_pred HhCCC-CHHHHHHHHHhhcccc---ccHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Confidence 99988 9999999999852100 1489999999999999999999999999987 679999999999999
Q ss_pred HhhCC---CChHHHHHHHHHhCCCCCCCCCCCCcCCCCHHHHHhcccCCCC
Q 013607 385 LRSSL---RSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGT 432 (439)
Q Consensus 385 ~~~~~---~~d~~egv~a~l~~K~r~P~w~~~~~~~v~~~~v~~~f~~~~~ 432 (439)
.+++. ++||.|||||.|+||+++|+|+|++++||+++.|++||+|.+.
T Consensus 308 ~~~~~~~~~~DF~EGVRA~LiDKd~~P~W~p~~l~~v~~~~v~~~f~~~~~ 358 (381)
T PLN02988 308 CHVMKGEISKDFVEGCRAILVDKDKNPKWEPRRLEDMKDSMVEQYFERVEE 358 (381)
T ss_pred HHHHhcCCCchHHHhHHHHhcCCCCCCCCCCCChhhCCHHHHHHHhCCCCc
Confidence 99987 6999999999999999999999999999999999999999854
No 4
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=3.4e-67 Score=532.13 Aligned_cols=353 Identities=32% Similarity=0.577 Sum_probs=297.7
Q ss_pred ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCC
Q 013607 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (439)
Q Consensus 65 ~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 144 (439)
.+.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++...... ...
T Consensus 36 ~~~V~~e~-~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~G-kaFcAGgDl~~l~~~~~~-~~~ 112 (401)
T PLN02157 36 DYQVLVEG-SGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSG-RAFCAGGDIVSLYHLRKR-GSP 112 (401)
T ss_pred CCceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCC-CCccCCcCHHHHHhhccc-cch
Confidence 34577775 789999999999999999999999999999999999999999999998 899999999988642211 111
Q ss_pred CchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCch
Q 013607 145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG 224 (439)
Q Consensus 145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~ 224 (439)
.....++...+.+++.|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .
T Consensus 113 ~~~~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G-~ 191 (401)
T PLN02157 113 DAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPG-R 191 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhh-H
Confidence 223346666677788899999999999999999999999999999999999999999999999999999999999999 3
Q ss_pred HHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCC-CCCchhhcchhHHH
Q 013607 225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDP-EGEAPLKLLLPQIT 303 (439)
Q Consensus 225 ~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~i~ 303 (439)
.+++|+|||+.++ |+||+++||||++||++++... .+++..... .+...+......+.... .....+......|+
T Consensus 192 -~a~~L~LTG~~i~-A~eA~~~GLv~~vVp~~~l~~~-~~~~~~i~~-~~p~av~~~k~~~~~~~~~~~~~l~~~~~~i~ 267 (401)
T PLN02157 192 -LGEYLGLTGLKLS-GAEMLACGLATHYIRSEEIPVM-EEQLKKLLT-DDPSVVESCLEKCAEVAHPEKTGVIRRIDLLE 267 (401)
T ss_pred -HHHHHHHcCCcCC-HHHHHHcCCceEEeCHhHHHHH-HHHHHHHHc-CCHHHHHHHHHHHhcccCCcchhHHHHHHHHH
Confidence 7999999999999 9999999999999999998644 454443222 34444555555443321 12234455678999
Q ss_pred hhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHH
Q 013607 304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV 383 (439)
Q Consensus 304 ~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~ 383 (439)
+||+.+ +++||+++|+.+.+... .+|++++++.|.++||+|+++|+++++++. ..++.+|+++|+++
T Consensus 268 ~~f~~~-d~~ei~~al~~~~~kr~---~~wa~~~~~~l~~~sP~Sl~vt~~~~~~~~---------~~~l~e~~~~e~~~ 334 (401)
T PLN02157 268 KCFSHD-TVEEIIDSLEIEAGRRK---DTWCITTLRRLKESSPLSLKVALRSIREGR---------LQTLDQCLIREYRM 334 (401)
T ss_pred HHhcCC-CHHHHHHHHHhhhcccc---hHHHHHHHHHHHhcCcHHHHHHHHHHHHhh---------cCCHHHHHHHHHHH
Confidence 999987 99999999976522111 489999999999999999999999999987 57999999999999
Q ss_pred HHhhCC---CChHHHHHHHHHhCCCCCCCCCCCCcCCCCHHHHHhcccCCCCCCCCCC
Q 013607 384 ALRSSL---RSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGTGVEELK 438 (439)
Q Consensus 384 ~~~~~~---~~d~~egv~a~l~~K~r~P~w~~~~~~~v~~~~v~~~f~~~~~~~~~~~ 438 (439)
..+++. ++||.|||||.|+||+++|+|+|++++||+++.|++||.|+.++.++++
T Consensus 335 ~~~~~~~~~~~DF~EGVRA~LiDKd~~P~W~p~~l~~V~~~~v~~~f~~~~~~~~~l~ 392 (401)
T PLN02157 335 SLQGLIGPMSGNFCEGVRARLIDKDEAPKWDPPSLEKVSEDMVDDYFCALTPTEPDLD 392 (401)
T ss_pred HHHHHhcCCCchHHHHHHHHHcCCCCCCCCCCCChhhCCHHHHHHHhCCCCCCccccc
Confidence 999885 6999999999999999999999999999999999999999864444454
No 5
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=9.4e-65 Score=508.58 Aligned_cols=340 Identities=43% Similarity=0.736 Sum_probs=301.0
Q ss_pred cceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCC
Q 013607 66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP 145 (439)
Q Consensus 66 ~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 145 (439)
+.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++..... .....
T Consensus 3 ~~v~~~~-~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~-~~~~~ 80 (342)
T PRK05617 3 DEVLAEV-EGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAAR-AGDPL 80 (342)
T ss_pred ceEEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhc-cCCch
Confidence 3577774 799999999999999999999999999999999999999999999998789999999998754221 11111
Q ss_pred chHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchH
Q 013607 146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS 225 (439)
Q Consensus 146 ~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~ 225 (439)
....++...+.++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++| .
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~- 158 (342)
T PRK05617 81 AADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-A- 158 (342)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-H-
Confidence 11134455567788899999999999999999999999999999999999999999999999999999999999977 5
Q ss_pred HHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHhh
Q 013607 226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSC 305 (439)
Q Consensus 226 ~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~ 305 (439)
.+++|+|||+.++ |+||+++|||++++|++++....+++++..+ .+..+.++.++.+|....+ ...+......|++|
T Consensus 159 ~a~~llltG~~i~-A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~ 235 (342)
T PRK05617 159 LGTYLALTGARIS-AADALYAGLADHFVPSADLPALLDALISLRW-DSGADVVDAALAAFATPAP-ASELAAQRAWIDEC 235 (342)
T ss_pred HHHHHHHcCCCCC-HHHHHHcCCcceecCHHHHHHHHHHHHhcCC-ccchhHHHHHHHHhccCCC-cchhHHHHHHHHHH
Confidence 8999999999999 9999999999999999998877677766544 4556678889999887744 45788899999999
Q ss_pred cCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHHH
Q 013607 306 FSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVAL 385 (439)
Q Consensus 306 F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~ 385 (439)
|+.. ++++|+++|+++. .+||.+++++|+++||.+++.+|+++++.. ..+++++++.|.+.+.
T Consensus 236 ~~~~-~~~~~~~~l~~~~-------~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~---------~~~l~~~~~~e~~~~~ 298 (342)
T PRK05617 236 FAGD-TVEDIIAALEADG-------GEFAAKTADTLRSRSPTSLKVTLEQLRRAR---------GLTLEECLRRELRLAL 298 (342)
T ss_pred hCCC-CHHHHHHHHHhcc-------HHHHHHHHHHHHhCCcHHHHHHHHHHHHhc---------CCCHHHHHHHHHHHHH
Confidence 9986 9999999999996 489999999999999999999999999876 5689999999999999
Q ss_pred hhCCCChHHHHHHHHHhCCCCCCCCCCCCcCCCCHHHHHhcccC
Q 013607 386 RSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEP 429 (439)
Q Consensus 386 ~~~~~~d~~egv~a~l~~K~r~P~w~~~~~~~v~~~~v~~~f~~ 429 (439)
..+.++|++||+++|+++|+|.|+|++++++||++++|+++|+|
T Consensus 299 ~~~~~~d~~egv~afl~ek~r~p~~~~~~~~~~~~~~~~~~~~~ 342 (342)
T PRK05617 299 AMLRSPDFVEGVRAVLIDKDRNPKWSPATLEDVTPEDVEAFFAP 342 (342)
T ss_pred HHHhCCchhhccceEEEcCCCCCCCCCCChHhCCHHHHHHhhCC
Confidence 99999999999999985665899999999999999999999998
No 6
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.9e-64 Score=512.19 Aligned_cols=346 Identities=34% Similarity=0.618 Sum_probs=299.6
Q ss_pred CcccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCC
Q 013607 63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR 142 (439)
Q Consensus 63 ~~~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~ 142 (439)
.+++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||+|.| ++||+|+|++++.....
T Consensus 8 ~~~~~v~~~~-~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g-~~FcaG~Dl~~~~~~~~--- 82 (379)
T PLN02874 8 PAEEVVLGEE-KGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAG-RAFSAGGDLKMFYDGRE--- 82 (379)
T ss_pred CCCCceEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CCccCccCHHHHHhhcc---
Confidence 3466788875 799999999999999999999999999999999999999999999998 79999999998754210
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCC
Q 013607 143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG 222 (439)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G 222 (439)
.......++...+.++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|
T Consensus 83 ~~~~~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g 162 (379)
T PLN02874 83 SDDSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPG 162 (379)
T ss_pred cchHHHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhH
Confidence 11112233444456677899999999999999999999999999999999999999999999999999999999999988
Q ss_pred chHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCC-CCCchhhcchhH
Q 013607 223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDP-EGEAPLKLLLPQ 301 (439)
Q Consensus 223 ~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~ 301 (439)
. .+++|+|||+.++ |+||+++|||+++||++++.+.+.++.+. ...+...++++|++|.... .....+....+.
T Consensus 163 -~-~a~~l~ltG~~i~-a~eA~~~GLv~~vv~~~~l~~~~~~l~~l--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 237 (379)
T PLN02874 163 -H-LGEYLALTGARLN-GKEMVACGLATHFVPSEKLPELEKRLLNL--NSGDESAVQEAIEEFSKDVQADEDSILNKQSW 237 (379)
T ss_pred -H-HHHHHHHcCCccc-HHHHHHcCCccEEeCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHhhcccCCCcchhHHHHHH
Confidence 4 7999999999999 99999999999999999888765566544 3345678899999987653 233455566899
Q ss_pred HHhhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHH
Q 013607 302 ITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEY 381 (439)
Q Consensus 302 i~~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~ 381 (439)
|.+||+.+ ++.+|+++|+++.++.. .+||.+++++|+++||+|++.+|++++++. ..++.++++.|+
T Consensus 238 i~~~f~~~-~~~eii~al~~~~~~~~---~~~A~~~a~~l~~~sP~al~~tk~~~~~~~---------~~~l~~~l~~e~ 304 (379)
T PLN02874 238 INECFSKD-TVEEIIKAFESEASKTG---NEWIKETLKGLRRSSPTGLKITLRSIREGR---------KQSLAECLKKEF 304 (379)
T ss_pred HHHHhCCC-CHHHHHHHHhhcccccc---cHHHHHHHHHHHhcChHHHHHHHHHHHHhc---------cCCHHHHHHHHH
Confidence 99999987 99999999997643222 489999999999999999999999999876 568999999999
Q ss_pred HHHHhhCC---CChHHHHHHHHHhCCCCCCCCCCCCcCCCCHHHHHhcccCCC
Q 013607 382 RVALRSSL---RSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLG 431 (439)
Q Consensus 382 ~~~~~~~~---~~d~~egv~a~l~~K~r~P~w~~~~~~~v~~~~v~~~f~~~~ 431 (439)
+.....+. ++||+|||+||++||+|+|+|+++++++|++++|+++|.|.+
T Consensus 305 ~~~~~~~~~~~~~D~~EGv~AflidK~r~P~w~~~~~~~v~~~~v~~~f~~~~ 357 (379)
T PLN02874 305 RLTMNILRSTVSDDVYEGIRALVIDKDNAPKWNPSTLDEVTDEKVDLVFQPFK 357 (379)
T ss_pred HHHHHHHhcCcCcchhhccceEEEcCCCCCCCCCCChhhCCHHHHHHHhCCCC
Confidence 99888777 999999999998788889999999999999999999999864
No 7
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=1.2e-54 Score=406.42 Aligned_cols=254 Identities=26% Similarity=0.372 Sum_probs=224.2
Q ss_pred cceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCC
Q 013607 66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP 145 (439)
Q Consensus 66 ~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 145 (439)
..+.....+++|+.|+||||+++|+|+..|+.||.+++..++.|+++.++||||.| ++||+|+||+++......+....
T Consensus 36 ~~~~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~g-ksFcsG~Dl~e~~~~~~~~~~~~ 114 (290)
T KOG1680|consen 36 IKIELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSG-KSFCSGADLKEMKKDEFQDVSDG 114 (290)
T ss_pred ceeEEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCC-CccccccCHHHHhhccccccccc
Confidence 33333335789999999999999999999999999999999999999999999998 99999999999887332221111
Q ss_pred chHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchH
Q 013607 146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS 225 (439)
Q Consensus 146 ~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~ 225 (439)
. +...+..+.+.+||+||+|||+|+|||+||+++||+|||+++|+|++|+.++|++|.+||+++|+|.+|++
T Consensus 115 ----~---~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s- 186 (290)
T KOG1680|consen 115 ----I---FLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKS- 186 (290)
T ss_pred ----c---ccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChH-
Confidence 1 12233445589999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHhh
Q 013607 226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSC 305 (439)
Q Consensus 226 ~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~ 305 (439)
+|+++++||++++ |+||+++|||++|||.+++.. ++
T Consensus 187 ~Ale~~ltg~~~~-AqeA~~~GlVn~Vvp~~~~l~--eA----------------------------------------- 222 (290)
T KOG1680|consen 187 RALEMILTGRRLG-AQEAKKIGLVNKVVPSGDALG--EA----------------------------------------- 222 (290)
T ss_pred HHHHHHHhcCccc-HHHHHhCCceeEeecchhHHH--HH-----------------------------------------
Confidence 9999999999999 999999999999999988664 22
Q ss_pred cCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHHH
Q 013607 306 FSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVAL 385 (439)
Q Consensus 306 F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~ 385 (439)
.+|++ +|+++||.+++..|+.++.+. ..++.+.++.|.+.+.
T Consensus 223 -------------------------v~l~~----~Ia~~~~~~v~~~K~svn~~~---------e~~l~e~l~~e~~~~~ 264 (290)
T KOG1680|consen 223 -------------------------VKLAE----QIAKNSPLVVRADKESVNAAY---------ETTLFEGLELERDLFG 264 (290)
T ss_pred -------------------------HHHHH----HHHhCCHHHHHHHHHHHHHHh---------hccHHHHHHhhhhhhh
Confidence 25666 899999999999999999976 6789999999999999
Q ss_pred hhCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 386 RSSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 386 ~~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
..+.++|-+|||.+|. +| |+|+|+.
T Consensus 265 s~~~~~d~~Eg~~~f~-~k-r~~~~~k 289 (290)
T KOG1680|consen 265 STFATEDRLEGMTAFA-EK-RKPKFSK 289 (290)
T ss_pred hhhhhHHHHHHHHHhc-cc-CCccccc
Confidence 9999999999999998 77 8999974
No 8
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-53 Score=412.67 Aligned_cols=254 Identities=24% Similarity=0.308 Sum_probs=226.0
Q ss_pred ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCC
Q 013607 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (439)
Q Consensus 65 ~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 144 (439)
++.+.++. +++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++...
T Consensus 3 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~------- 73 (257)
T PRK05862 3 YETILVET-RGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSE-KAFAAGADIKEMADL------- 73 (257)
T ss_pred CceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC-CceECCcChHhHhcc-------
Confidence 45677874 789999999999999999999999999999999999999999999997 799999999987531
Q ss_pred CchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCch
Q 013607 145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG 224 (439)
Q Consensus 145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~ 224 (439)
.....+...+..++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 74 ~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 153 (257)
T PRK05862 74 SFMDVYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKA 153 (257)
T ss_pred chhHHHHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHH
Confidence 11112233344567789999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHh
Q 013607 225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITS 304 (439)
Q Consensus 225 ~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~ 304 (439)
++++|++||+.++ |+||+++||||+++|++++.+.+.
T Consensus 154 -~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------- 190 (257)
T PRK05862 154 -KAMDLCLTGRMMD-AAEAERAGLVSRVVPADKLLDEAL----------------------------------------- 190 (257)
T ss_pred -HHHHHHHhCCccC-HHHHHHcCCCCEeeCHhHHHHHHH-----------------------------------------
Confidence 9999999999999 999999999999999877764322
Q ss_pred hcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHH
Q 013607 305 CFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVA 384 (439)
Q Consensus 305 ~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~ 384 (439)
+|++ +|++.||.+++.+|++++... ..++.++++.|.+.+
T Consensus 191 ---------------------------~~a~----~l~~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~~ 230 (257)
T PRK05862 191 ---------------------------AAAT----TIASFSLPAVMMAKEAVNRAY---------ETTLAEGLLFERRLF 230 (257)
T ss_pred ---------------------------HHHH----HHHhCCHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Confidence 3443 688999999999999999876 568999999999999
Q ss_pred HhhCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 385 LRSSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 385 ~~~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
...+.++|++||+++|+ +| |+|.|++
T Consensus 231 ~~~~~s~~~~e~i~af~-~k-r~p~~~~ 256 (257)
T PRK05862 231 HSLFATEDQKEGMAAFV-EK-RKPVFKH 256 (257)
T ss_pred HHHhcChhHHHHHHHHh-cc-CCCCCCC
Confidence 99999999999999999 78 7999975
No 9
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.7e-53 Score=411.70 Aligned_cols=257 Identities=25% Similarity=0.362 Sum_probs=226.7
Q ss_pred ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCc
Q 013607 67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (439)
Q Consensus 67 ~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 146 (439)
.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++..... ......
T Consensus 4 ~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~~~~~ 81 (260)
T PRK05980 4 TVLIEI-RDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVA-AGADVA 81 (260)
T ss_pred eEEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhcc-ccchhh
Confidence 477774 799999999999999999999999999999999999999999999998679999999998754211 011112
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHH
Q 013607 147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV 226 (439)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~ 226 (439)
...+......++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 82 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~-~ 160 (260)
T PRK05980 82 LRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRK-R 160 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHH-H
Confidence 334555556678889999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHhhc
Q 013607 227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCF 306 (439)
Q Consensus 227 a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F 306 (439)
++++++||+.++ |+||+++||||++||++++.+.+.
T Consensus 161 a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------- 196 (260)
T PRK05980 161 ALELLLTGDAFS-AERALEIGLVNAVVPHEELLPAAR------------------------------------------- 196 (260)
T ss_pred HHHHHHcCCccC-HHHHHHcCCCCcccCHHHHHHHHH-------------------------------------------
Confidence 999999999999 999999999999999877664322
Q ss_pred CCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHHHh
Q 013607 307 SSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALR 386 (439)
Q Consensus 307 ~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~ 386 (439)
++|+ ++++.||.+++.+|++++... ..++.++++.|.+.+..
T Consensus 197 -------------------------~~a~----~la~~~p~a~~~~K~~~~~~~---------~~~~~~~~~~e~~~~~~ 238 (260)
T PRK05980 197 -------------------------ALAR----RIIRHSPVAVAAILTAVTRGL---------NLSIAEGLLIESEQFAR 238 (260)
T ss_pred -------------------------HHHH----HHHhCCHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHH
Confidence 3443 689999999999999999876 56799999999999999
Q ss_pred hCCCChHHHHHHHHHhCCCCCCCC
Q 013607 387 SSLRSDFAEGVRAVLVDKDQNPKW 410 (439)
Q Consensus 387 ~~~~~d~~egv~a~l~~K~r~P~w 410 (439)
.+.++|++||+++|+ +| |+|+|
T Consensus 239 ~~~~~~~~e~~~af~-~k-r~p~~ 260 (260)
T PRK05980 239 MAGSADLREGLAAWI-ER-RRPAY 260 (260)
T ss_pred HhcChhHHHHHHHHh-cc-CCCCC
Confidence 999999999999999 77 78988
No 10
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=3e-53 Score=411.42 Aligned_cols=259 Identities=26% Similarity=0.323 Sum_probs=229.3
Q ss_pred CcccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCC
Q 013607 63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR 142 (439)
Q Consensus 63 ~~~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~ 142 (439)
|.++.+.++. +++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|+++||+|+|++++....
T Consensus 1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~---- 75 (260)
T PRK05809 1 MELKNVILEK-EGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLN---- 75 (260)
T ss_pred CCcceEEEEE-eCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccC----
Confidence 3467788875 78999999999999999999999999999999999999999999999868999999999875411
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCC
Q 013607 143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG 222 (439)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G 222 (439)
......+......++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|
T Consensus 76 -~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG 154 (260)
T PRK05809 76 -EEEGRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVG 154 (260)
T ss_pred -hHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhC
Confidence 1112223344456788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHH
Q 013607 223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQI 302 (439)
Q Consensus 223 ~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i 302 (439)
.. ++++|++||+.++ |+||+++||||+++|++++.+.+.
T Consensus 155 ~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------- 193 (260)
T PRK05809 155 PG-KAKELIYTGDMIN-AEEALRIGLVNKVVEPEKLMEEAK--------------------------------------- 193 (260)
T ss_pred HH-HHHHHHHhCCCCC-HHHHHHcCCCCcccChHHHHHHHH---------------------------------------
Confidence 98 9999999999999 999999999999999877654222
Q ss_pred HhhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHH
Q 013607 303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYR 382 (439)
Q Consensus 303 ~~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~ 382 (439)
++++ +|++.||.+++.+|+++++.. ..++.++++.|.+
T Consensus 194 -----------------------------~~a~----~la~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~ 231 (260)
T PRK05809 194 -----------------------------ALAN----KIAANAPIAVKLCKDAINRGM---------QVDIDTAVAIEAE 231 (260)
T ss_pred -----------------------------HHHH----HHHhCCHHHHHHHHHHHHHHh---------cCCHHHHHHHHHH
Confidence 3443 789999999999999999876 5679999999999
Q ss_pred HHHhhCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 383 VALRSSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 383 ~~~~~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
.+..++.++|++||+++|+ +| |+|+|+.
T Consensus 232 ~~~~~~~~~~~~egi~af~-~~-r~p~~~~ 259 (260)
T PRK05809 232 DFGECFSTEDQTEGMTAFV-EK-REKNFKN 259 (260)
T ss_pred HHHHHhcCHHHHHHHHHHh-cC-CCCCCCC
Confidence 9999999999999999999 77 7999975
No 11
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.2e-53 Score=409.81 Aligned_cols=254 Identities=22% Similarity=0.316 Sum_probs=225.0
Q ss_pred ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCc
Q 013607 67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (439)
Q Consensus 67 ~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 146 (439)
.+.++. +++|++||||||++ |++|.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++... ....
T Consensus 4 ~v~~~~-~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~-----~~~~ 76 (258)
T PRK09076 4 ELDLEI-DGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADG-----DKAV 76 (258)
T ss_pred EEEEEE-ECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhc-----Chhh
Confidence 477774 78999999999986 9999999999999999999999999999999987799999999987531 1111
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHH
Q 013607 147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV 226 (439)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~ 226 (439)
...+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 77 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~-~ 155 (258)
T PRK09076 77 AREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEG-W 155 (258)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHH-H
Confidence 223344455678889999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHhhc
Q 013607 227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCF 306 (439)
Q Consensus 227 a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F 306 (439)
+++|++||+.++ |+||+++||||+|||++++.+.+.
T Consensus 156 a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------- 191 (258)
T PRK09076 156 AKRMILCGERVD-AATALRIGLVEEVVEKGEAREAAL------------------------------------------- 191 (258)
T ss_pred HHHHHHcCCcCC-HHHHHHCCCCceecCchhHHHHHH-------------------------------------------
Confidence 999999999999 999999999999999887664222
Q ss_pred CCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHHHh
Q 013607 307 SSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALR 386 (439)
Q Consensus 307 ~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~ 386 (439)
++|+ +|+++||.+++.+|++++... ..++.+.++.|.+.+..
T Consensus 192 -------------------------~~a~----~l~~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~ 233 (258)
T PRK09076 192 -------------------------ALAQ----KVANQSPSAVAACKTLIQAAR---------NGPRAAALALERELFVD 233 (258)
T ss_pred -------------------------HHHH----HHHhCCHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHH
Confidence 3343 799999999999999999876 46799999999999999
Q ss_pred hCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 387 SSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 387 ~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
++.++|++||+++|+ +| |+|+|++
T Consensus 234 ~~~~~~~~eg~~af~-~k-r~p~~~~ 257 (258)
T PRK09076 234 LFDTEDQREGVNAFL-EK-RAPQWKN 257 (258)
T ss_pred HhcCchHHHHHHHHh-cC-CCCCCCC
Confidence 999999999999999 77 7999974
No 12
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.5e-53 Score=412.67 Aligned_cols=261 Identities=22% Similarity=0.291 Sum_probs=230.2
Q ss_pred cccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCC
Q 013607 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (439)
Q Consensus 64 ~~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~ 143 (439)
+.+.|.++. +++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++.... ..
T Consensus 9 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~---~~ 84 (269)
T PRK06127 9 PTGKLLAEK-TGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESR---SD 84 (269)
T ss_pred CCCceEEEE-ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcc---cc
Confidence 456688885 78999999999999999999999999999999999999999999999867999999999875411 11
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCc
Q 013607 144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG 223 (439)
Q Consensus 144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~ 223 (439)
.+....+......++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus 85 ~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~ 164 (269)
T PRK06127 85 AEAVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGP 164 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCH
Confidence 11223344445567888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHH
Q 013607 224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT 303 (439)
Q Consensus 224 ~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~ 303 (439)
. ++++|++||+.++ |+||+++||||+|||++++.+.+.
T Consensus 165 ~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------- 202 (269)
T PRK06127 165 S-AAKDLFYTARRFD-AAEALRIGLVHRVTAADDLETALA---------------------------------------- 202 (269)
T ss_pred H-HHHHHHHcCCCCC-HHHHHHcCCCCEeeCHHHHHHHHH----------------------------------------
Confidence 8 9999999999999 999999999999999887764332
Q ss_pred hhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHH
Q 013607 304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV 383 (439)
Q Consensus 304 ~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~ 383 (439)
+||+ ++++.||.+++.+|++++... ..++.+.++.|...
T Consensus 203 ----------------------------~~a~----~l~~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~ 241 (269)
T PRK06127 203 ----------------------------DYAA----TIAGNAPLTLRAAKRAIAELL---------KDEPERDMAACQAL 241 (269)
T ss_pred ----------------------------HHHH----HHHhCCHHHHHHHHHHHHHhc---------cCCHHHHHHHHHHH
Confidence 4444 688899999999999999876 56799999999999
Q ss_pred HHhhCCCChHHHHHHHHHhCCCCCCCCCCC
Q 013607 384 ALRSSLRSDFAEGVRAVLVDKDQNPKWNPA 413 (439)
Q Consensus 384 ~~~~~~~~d~~egv~a~l~~K~r~P~w~~~ 413 (439)
+..++.++|++||+.+|+ +| |+|+|+++
T Consensus 242 ~~~~~~~~d~~e~~~af~-ek-r~p~~~~~ 269 (269)
T PRK06127 242 VAACFDSEDYREGRAAFM-EK-RKPVFKGR 269 (269)
T ss_pred HHHHhcChHHHHHHHHHh-cC-CCCCCCCC
Confidence 999999999999999999 78 79999763
No 13
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=2.5e-53 Score=409.71 Aligned_cols=250 Identities=23% Similarity=0.368 Sum_probs=223.9
Q ss_pred cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHH
Q 013607 74 PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTA 153 (439)
Q Consensus 74 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 153 (439)
+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++... .......+...
T Consensus 2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~-----~~~~~~~~~~~ 76 (251)
T PLN02600 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKM-----SPSEVQKFVNS 76 (251)
T ss_pred CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhcc-----ChHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999865899999999987531 11123345555
Q ss_pred HHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHHHHHHhhc
Q 013607 154 EYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMT 233 (439)
Q Consensus 154 ~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~a~~l~lt 233 (439)
...++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++++|++|
T Consensus 77 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~-~a~~l~lt 155 (251)
T PLN02600 77 LRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRS-RAKELIFT 155 (251)
T ss_pred HHHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHH-HHHHHHHh
Confidence 56678889999999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred CCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHhhcCCCCCHH
Q 013607 234 GKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVR 313 (439)
Q Consensus 234 G~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~sv~ 313 (439)
|+.++ |+||+++||||++||++++.+.+.
T Consensus 156 g~~~~-a~eA~~~Glv~~vv~~~~~~~~a~-------------------------------------------------- 184 (251)
T PLN02600 156 GRRIG-AREAASMGLVNYCVPAGEAYEKAL-------------------------------------------------- 184 (251)
T ss_pred CCccC-HHHHHHcCCCcEeeChhHHHHHHH--------------------------------------------------
Confidence 99999 999999999999999887664222
Q ss_pred HHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHHHhhCCCChH
Q 013607 314 QIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDF 393 (439)
Q Consensus 314 ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~d~ 393 (439)
++|+ +|++.||.+++.+|++++... ..++.+.++.|.+.+..++.++|+
T Consensus 185 ------------------~~a~----~la~~~p~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~~~~~~d~ 233 (251)
T PLN02600 185 ------------------ELAQ----EINQKGPLAIKMAKKAINEGS---------EVDMASGLEIEEECYEQVLKTKDR 233 (251)
T ss_pred ------------------HHHH----HHHhCCHHHHHHHHHHHHHHc---------cCCHHHHHHHHHHHHHHHhCCHHH
Confidence 3444 799999999999999999875 568999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCC
Q 013607 394 AEGVRAVLVDKDQNPKWNPA 413 (439)
Q Consensus 394 ~egv~a~l~~K~r~P~w~~~ 413 (439)
+||+++|+ +| |+|.|+.+
T Consensus 234 ~eg~~af~-ek-r~p~~~~~ 251 (251)
T PLN02600 234 LEGLAAFA-EK-RKPVYTGK 251 (251)
T ss_pred HHHHHHHh-cC-CCCCCCCC
Confidence 99999999 78 79999753
No 14
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.8e-53 Score=407.53 Aligned_cols=253 Identities=23% Similarity=0.295 Sum_probs=223.8
Q ss_pred cceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCC
Q 013607 66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP 145 (439)
Q Consensus 66 ~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 145 (439)
+.|.++. +++|++||||||++.|+||.+|+.+|.++++.++ +++|+|||||.| ++||+|+|++++.... ..
T Consensus 2 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g-~~F~aG~Dl~~~~~~~-----~~ 72 (255)
T PRK08150 2 SLVSYEL-DGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEG-DHFCAGLDLSELRERD-----AG 72 (255)
T ss_pred ceEEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCC-CceecCcCHHHHhhcc-----ch
Confidence 4577775 7899999999999999999999999999999997 789999999998 7999999999875411 11
Q ss_pred chHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchH
Q 013607 146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS 225 (439)
Q Consensus 146 ~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~ 225 (439)
....+...++.++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..
T Consensus 73 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~- 151 (255)
T PRK08150 73 EGMHHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVA- 151 (255)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHH-
Confidence 1123344456678889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHhh
Q 013607 226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSC 305 (439)
Q Consensus 226 ~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~ 305 (439)
++++|++||+.++ |+||+++||||++||++++.+.+.
T Consensus 152 ~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------ 188 (255)
T PRK08150 152 RMTDMMLTGRVYD-AQEGERLGLAQYLVPAGEALDKAM------------------------------------------ 188 (255)
T ss_pred HHHHHHHcCCcCC-HHHHHHcCCccEeeCchHHHHHHH------------------------------------------
Confidence 9999999999999 999999999999999888765332
Q ss_pred cCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHHH
Q 013607 306 FSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVAL 385 (439)
Q Consensus 306 F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~ 385 (439)
+||+ +|+++||.+++.+|++++... ..+++++++.|.+.+.
T Consensus 189 --------------------------~~a~----~la~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~ 229 (255)
T PRK08150 189 --------------------------ELAR----RIAQNAPLTNFAVLNALPRIA---------DMSADDGLFVESLMAA 229 (255)
T ss_pred --------------------------HHHH----HHHhCCHHHHHHHHHHHHHhc---------cCCHHHHHHHHHHHHH
Confidence 3443 799999999999999999875 5679999999999988
Q ss_pred hhCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 386 RSSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 386 ~~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
..+.++|++||+++|+ +| |+|+|++
T Consensus 230 ~~~~s~d~~eg~~af~-~k-r~p~~~~ 254 (255)
T PRK08150 230 VAQSAPEAKERLRAFL-EK-KAAKVKP 254 (255)
T ss_pred HHhcCHHHHHHHHHHh-cc-CCCCCCC
Confidence 8999999999999999 77 7999976
No 15
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.4e-53 Score=409.59 Aligned_cols=258 Identities=24% Similarity=0.348 Sum_probs=229.0
Q ss_pred cceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCC
Q 013607 66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP 145 (439)
Q Consensus 66 ~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 145 (439)
+++.+++.+++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|+++||+|+|++++... ...
T Consensus 3 ~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~-----~~~ 77 (260)
T PRK07657 3 QNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGM-----NEE 77 (260)
T ss_pred ceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcC-----Chh
Confidence 467777446899999999999999999999999999999999999999999999986699999999987531 111
Q ss_pred chHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchH
Q 013607 146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS 225 (439)
Q Consensus 146 ~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~ 225 (439)
....+...+..++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 78 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~- 156 (260)
T PRK07657 78 QVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVG- 156 (260)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHH-
Confidence 2234455556788899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHhh
Q 013607 226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSC 305 (439)
Q Consensus 226 ~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~ 305 (439)
++++|++||+.++ |+||+++||||++||++++.+.+.
T Consensus 157 ~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------ 193 (260)
T PRK07657 157 RAKELIYTGRRIS-AQEAKEIGLVEFVVPAHLLEEKAI------------------------------------------ 193 (260)
T ss_pred HHHHHHHhCCCCC-HHHHHHcCCCCeecCHHHHHHHHH------------------------------------------
Confidence 9999999999999 999999999999999887764322
Q ss_pred cCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHHH
Q 013607 306 FSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVAL 385 (439)
Q Consensus 306 F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~ 385 (439)
+||+ +|+.+||.+++.+|++++... ..++.++++.|.+.+.
T Consensus 194 --------------------------~~a~----~l~~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~ 234 (260)
T PRK07657 194 --------------------------EIAE----KIASNGPIAVRQAKEAISNGI---------QVDLHTGLQIEKQAYE 234 (260)
T ss_pred --------------------------HHHH----HHHhCCHHHHHHHHHHHHHhc---------cCCHHHHHHHHHHHHH
Confidence 3443 789999999999999999876 5679999999999999
Q ss_pred hhCCCChHHHHHHHHHhCCCCCCCCCCC
Q 013607 386 RSSLRSDFAEGVRAVLVDKDQNPKWNPA 413 (439)
Q Consensus 386 ~~~~~~d~~egv~a~l~~K~r~P~w~~~ 413 (439)
..+.++|++||+++|+ +| |+|+|+.+
T Consensus 235 ~~~~~~~~~e~~~af~-~~-r~~~~~~~ 260 (260)
T PRK07657 235 GTIPTKDRLEGLQAFK-EK-RKPMYKGE 260 (260)
T ss_pred HHhcCHhHHHHHHHHh-cC-CCCCCCCC
Confidence 9999999999999999 77 79999753
No 16
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.9e-53 Score=412.49 Aligned_cols=261 Identities=21% Similarity=0.300 Sum_probs=227.4
Q ss_pred ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhc--C-
Q 013607 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQK--D- 141 (439)
Q Consensus 65 ~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~--~- 141 (439)
++.+.++. +++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++...... .
T Consensus 5 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~~~~ 82 (272)
T PRK06142 5 YESFTVEL-ADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSG-KHFSYGIDLPAMAGVFGQLGKD 82 (272)
T ss_pred cceEEEEe-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CceecccCHHHHhhhccccccc
Confidence 56788885 799999999999999999999999999999999999999999999998 899999999987542100 0
Q ss_pred ---CCCCchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHh
Q 013607 142 ---RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAA 218 (439)
Q Consensus 142 ---~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~ 218 (439)
........+...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~ 162 (272)
T PRK06142 83 GLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLP 162 (272)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHH
Confidence 00111222334455677889999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCchHHHHHHhhcCCCCCcHHHHHHcCCcccccCC-CCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhc
Q 013607 219 KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS-GNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKL 297 (439)
Q Consensus 219 r~~G~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~-~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 297 (439)
+++|.. ++++|++||+.++ |+||+++||||++||+ +++.+.+.
T Consensus 163 ~~~G~~-~a~~l~l~g~~~~-a~eA~~~GLv~~vv~~~~~l~~~a~---------------------------------- 206 (272)
T PRK06142 163 RIIGDG-HLRELALTGRDID-AAEAEKIGLVNRVYDDADALLAAAH---------------------------------- 206 (272)
T ss_pred HHhCHH-HHHHHHHhCCCcC-HHHHHHcCCccEecCCHHHHHHHHH----------------------------------
Confidence 999998 9999999999999 9999999999999986 56654222
Q ss_pred chhHHHhhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHH
Q 013607 298 LLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVM 377 (439)
Q Consensus 298 ~~~~i~~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l 377 (439)
+||+ +|++.||.+++.+|+++++.. ..++.+++
T Consensus 207 ----------------------------------~~a~----~ia~~~~~a~~~~K~~l~~~~---------~~~l~~~~ 239 (272)
T PRK06142 207 ----------------------------------ATAR----EIAAKSPLAVRGTKEVLDYMR---------DHRVADGL 239 (272)
T ss_pred ----------------------------------HHHH----HHHhCCHHHHHHHHHHHHHhh---------cCCHHHHH
Confidence 4444 789999999999999999876 56799999
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 378 KYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 378 ~~e~~~~~~~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
+.|...+...+.++|++|||++|+ +| |+|+|+.
T Consensus 240 ~~~~~~~~~~~~~~d~~egv~af~-~k-r~p~~~~ 272 (272)
T PRK06142 240 RYVATWNAAMLPSKDLTEAIAAHM-EK-RPPEFTG 272 (272)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHh-cC-CCCCCCC
Confidence 999999999999999999999999 77 7999963
No 17
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=6.7e-53 Score=407.74 Aligned_cols=252 Identities=22% Similarity=0.336 Sum_probs=223.7
Q ss_pred ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCc
Q 013607 67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (439)
Q Consensus 67 ~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 146 (439)
.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++... + .
T Consensus 3 ~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~---~----~ 73 (255)
T PRK09674 3 ELLVSR-QQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNA-RFFAAGADLNEMAEK---D----L 73 (255)
T ss_pred eEEEEe-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CceecccChHhHhcc---c----h
Confidence 466764 789999999999999999999999999999999999999999999997 899999999987531 0 1
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHH
Q 013607 147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV 226 (439)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~ 226 (439)
...+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+. +
T Consensus 74 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~-~ 152 (255)
T PRK09674 74 AATLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKS-L 152 (255)
T ss_pred hhhHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHH-H
Confidence 111222334577789999999999999999999999999999999999999999999999999999999999999997 9
Q ss_pred HHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHhhc
Q 013607 227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCF 306 (439)
Q Consensus 227 a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F 306 (439)
+++++++|+.++ |+||+++||||++||++++.+.+.
T Consensus 153 a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~~~~~a~------------------------------------------- 188 (255)
T PRK09674 153 ASQMVLTGESIT-AQQAQQAGLVSEVFPPELTLERAL------------------------------------------- 188 (255)
T ss_pred HHHHHHcCCccC-HHHHHHcCCCcEecChHHHHHHHH-------------------------------------------
Confidence 999999999999 999999999999999877654222
Q ss_pred CCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHHHh
Q 013607 307 SSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALR 386 (439)
Q Consensus 307 ~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~ 386 (439)
+||+ +|+++||.+++.+|++++... ..++.++++.|.+.+..
T Consensus 189 -------------------------~~a~----~l~~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~ 230 (255)
T PRK09674 189 -------------------------QLAS----KIARHSPLALRAAKQALRQSQ---------EVDLQAGLAQERQLFTL 230 (255)
T ss_pred -------------------------HHHH----HHHhCCHHHHHHHHHHHHHhh---------cCCHHHHHHHHHHHHHH
Confidence 3444 799999999999999999876 56799999999999999
Q ss_pred hCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 387 SSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 387 ~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
.+.++|++||+++|+ +| |+|+|++
T Consensus 231 ~~~~~~~~e~i~af~-~k-r~p~~~~ 254 (255)
T PRK09674 231 LAATEDRHEGISAFL-EK-RTPDFKG 254 (255)
T ss_pred HhcCHHHHHHHHHHh-cc-CCCCCCC
Confidence 999999999999999 67 7999975
No 18
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7e-53 Score=408.51 Aligned_cols=256 Identities=25% Similarity=0.392 Sum_probs=221.4
Q ss_pred CcccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCC
Q 013607 63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR 142 (439)
Q Consensus 63 ~~~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~ 142 (439)
|.++.+.++. +++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++.... .
T Consensus 1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~---~ 76 (259)
T PRK06494 1 MALPFSTVER-KGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGG---K 76 (259)
T ss_pred CCCceeEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcC---c
Confidence 3467788885 78999999999999999999999999999999999999999999999867999999999875421 0
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCC
Q 013607 143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG 222 (439)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G 222 (439)
... ....+..+ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|
T Consensus 77 ~~~----~~~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg 151 (259)
T PRK06494 77 RGW----PESGFGGL-TSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIG 151 (259)
T ss_pred chh----hhHHHHHH-HHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcC
Confidence 000 11111222 3456899999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHH
Q 013607 223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQI 302 (439)
Q Consensus 223 ~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i 302 (439)
.. ++++|++||+.++ |+||+++||||++||++++.+.+.
T Consensus 152 ~~-~a~~lll~g~~~~-a~eA~~~GLv~~vv~~~~l~~~a~--------------------------------------- 190 (259)
T PRK06494 152 LK-RAMGMILTGRRVT-AREGLELGFVNEVVPAGELLAAAE--------------------------------------- 190 (259)
T ss_pred HH-HHHHHHHcCCcCC-HHHHHHcCCCcEecCHhHHHHHHH---------------------------------------
Confidence 98 9999999999999 999999999999999877664222
Q ss_pred HhhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHH--
Q 013607 303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYE-- 380 (439)
Q Consensus 303 ~~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e-- 380 (439)
+||+ +|+++||.+++.+|+++++.. ..+++++++.|
T Consensus 191 -----------------------------~~a~----~la~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~ 228 (259)
T PRK06494 191 -----------------------------RWAD----DILACSPLSIRASKQAVYRGL---------EVSLEEAITAQRD 228 (259)
T ss_pred -----------------------------HHHH----HHHhcCHHHHHHHHHHHHHhc---------cCCHHHHHHHHHH
Confidence 4444 799999999999999999876 56799999999
Q ss_pred HHHHHhhCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 381 YRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 381 ~~~~~~~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
...+..++.++|++||+++|+ +| |+|+|+.
T Consensus 229 ~~~~~~~~~~~d~~eg~~af~-~k-r~p~~~~ 258 (259)
T PRK06494 229 YPAVEARRASQDYIEGPKAFA-EK-RPPRWKG 258 (259)
T ss_pred HHHHHHHhcCccHHHHHHHHH-cc-CCCCCCC
Confidence 567788899999999999999 67 7999975
No 19
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-52 Score=407.20 Aligned_cols=260 Identities=25% Similarity=0.347 Sum_probs=225.2
Q ss_pred cccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCC
Q 013607 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (439)
Q Consensus 64 ~~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~ 143 (439)
.++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++ |+++++|||+|.| ++||+|+|++++.... ....
T Consensus 2 ~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~-~~~~ 77 (262)
T PRK08140 2 MYETILLAI-EAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAG-RGFCAGQDLADRDVTP-GGAM 77 (262)
T ss_pred CCceEEEEe-ECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCC-CCcccCcChHHHhccc-cccc
Confidence 456688885 7899999999999999999999999999999999 9999999999998 7999999999874311 0000
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCc
Q 013607 144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG 223 (439)
Q Consensus 144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~ 223 (439)
......+......++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~ 157 (262)
T PRK08140 78 PDLGESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGM 157 (262)
T ss_pred hhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCH
Confidence 11111122222346778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHH
Q 013607 224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT 303 (439)
Q Consensus 224 ~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~ 303 (439)
. ++++|++||+.++ |+||+++||||+|||++++.+.+.
T Consensus 158 ~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------- 195 (262)
T PRK08140 158 A-RALGLALLGEKLS-AEQAEQWGLIWRVVDDAALADEAQ---------------------------------------- 195 (262)
T ss_pred H-HHHHHHHcCCCcC-HHHHHHcCCccEeeChHHHHHHHH----------------------------------------
Confidence 8 9999999999999 999999999999999887664222
Q ss_pred hhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHH
Q 013607 304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV 383 (439)
Q Consensus 304 ~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~ 383 (439)
++|+ +|++.||.+++.+|++++... ..++.++++.|...
T Consensus 196 ----------------------------~~a~----~ia~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~ 234 (262)
T PRK08140 196 ----------------------------QLAA----HLATQPTRGLALIKQAMNASA---------TNTLDAQLDLERDL 234 (262)
T ss_pred ----------------------------HHHH----HHHhCCHHHHHHHHHHHHHhh---------hCCHHHHHHHHHHH
Confidence 4444 789999999999999999876 56799999999999
Q ss_pred HHhhCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 384 ALRSSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 384 ~~~~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
+...+.++|++||+++|+ +| |+|.|++
T Consensus 235 ~~~~~~~~~~~e~~~af~-~k-r~p~~~~ 261 (262)
T PRK08140 235 QREAGRSADYAEGVSAFL-EK-RAPRFTG 261 (262)
T ss_pred HHHHhcChhHHHHHHHHh-cC-CCCCCCC
Confidence 999999999999999999 77 7999975
No 20
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-52 Score=406.24 Aligned_cols=256 Identities=23% Similarity=0.344 Sum_probs=226.9
Q ss_pred cccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCC
Q 013607 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (439)
Q Consensus 64 ~~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~ 143 (439)
..+.+.++..+++|++|+||||+++|+||.+|+.+|.++++.+++|+++|+|||||.| ++||+|+|++++... .
T Consensus 5 ~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~---~-- 78 (261)
T PRK08138 5 ATDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGE-KVFAAGADIKEFATA---G-- 78 (261)
T ss_pred CCCCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC-CCeeCCcCHHHHhcc---c--
Confidence 3566777754689999999999999999999999999999999999999999999987 799999999987531 0
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCc
Q 013607 144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG 223 (439)
Q Consensus 144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~ 223 (439)
....+......++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.
T Consensus 79 --~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~ 156 (261)
T PRK08138 79 --AIEMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGK 156 (261)
T ss_pred --hhHHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCH
Confidence 112233444567888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHH
Q 013607 224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT 303 (439)
Q Consensus 224 ~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~ 303 (439)
. ++++|++||+.++ |+||+++||||++||++++.+.+.
T Consensus 157 ~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------- 194 (261)
T PRK08138 157 F-KAMRMALTGCMVP-APEALAIGLVSEVVEDEQTLPRAL---------------------------------------- 194 (261)
T ss_pred H-HHHHHHHcCCCCC-HHHHHHCCCCcEecCchHHHHHHH----------------------------------------
Confidence 8 9999999999999 999999999999999887664222
Q ss_pred hhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHH
Q 013607 304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV 383 (439)
Q Consensus 304 ~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~ 383 (439)
+||+ ++++.||.+++.+|++++... ..++.+++..|.+.
T Consensus 195 ----------------------------~~a~----~l~~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~ 233 (261)
T PRK08138 195 ----------------------------ELAR----EIARMPPLALAQIKEVVLAGA---------DAPLDAALALERKA 233 (261)
T ss_pred ----------------------------HHHH----HHHhCCHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Confidence 3444 688899999999999999876 56799999999999
Q ss_pred HHhhCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 384 ALRSSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 384 ~~~~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
+..++.++|++||+++|+ +| |+|+|++
T Consensus 234 ~~~~~~~~~~~~~i~af~-~k-r~~~~~~ 260 (261)
T PRK08138 234 FQLLFDSEDQKEGMDAFL-EK-RKPAYKG 260 (261)
T ss_pred HHHHhcCHHHHHHHHHHh-cC-CCCCCCC
Confidence 999999999999999999 77 7999975
No 21
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=1.3e-52 Score=409.96 Aligned_cols=254 Identities=22% Similarity=0.345 Sum_probs=220.9
Q ss_pred ecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCC--CC----Cc
Q 013607 73 HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR--NT----PL 146 (439)
Q Consensus 73 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~--~~----~~ 146 (439)
.+++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++........ .. ..
T Consensus 14 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 92 (275)
T PLN02664 14 PNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAG-DHFCSGIDLKTLNSISEQSSSGDRGRSGER 92 (275)
T ss_pred CCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CceeeCcChHHhhhcccccccccchhhHHH
Confidence 4689999999999999999999999999999999999999999999998 89999999998754211000 00 11
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHH
Q 013607 147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV 226 (439)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~ 226 (439)
...+...+..++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 93 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~-~ 171 (275)
T PLN02664 93 LRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYG-N 171 (275)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCHH-H
Confidence 222333445677889999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHhhcCCCCCcHHHHHHcCCcccccCC-CCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHhh
Q 013607 227 GAYLGMTGKRISTPSDALFAGLGTDYVPS-GNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSC 305 (439)
Q Consensus 227 a~~l~ltG~~i~~A~eA~~~GLv~~vv~~-~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~ 305 (439)
++++++||+.++ |+||+++||||++||+ +++.+.+.
T Consensus 172 A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~~l~~~~~------------------------------------------ 208 (275)
T PLN02664 172 AMELALTGRRFS-GSEAKELGLVSRVFGSKEDLDEGVR------------------------------------------ 208 (275)
T ss_pred HHHHHHhCCCCC-HHHHHHcCCCceeeCChhHHHHHHH------------------------------------------
Confidence 999999999999 9999999999999985 55553222
Q ss_pred cCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHHH
Q 013607 306 FSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVAL 385 (439)
Q Consensus 306 F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~ 385 (439)
++|+ +|+++||.+++.+|++++... ..++.++++.|...+.
T Consensus 209 --------------------------~~a~----~ia~~~p~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~ 249 (275)
T PLN02664 209 --------------------------LIAE----GIAAKSPLAVTGTKAVLLRSR---------ELSVEQGLDYVATWNS 249 (275)
T ss_pred --------------------------HHHH----HHHhCCHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHH
Confidence 3343 799999999999999999876 5679999999999999
Q ss_pred hhCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 386 RSSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 386 ~~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
..+.++|++||+++|+ +| |+|.|+.
T Consensus 250 ~~~~~~d~~eg~~af~-ek-r~p~~~~ 274 (275)
T PLN02664 250 AMLVSDDLNEAVSAQI-QK-RKPVFAK 274 (275)
T ss_pred HhccChhHHHHHHHHh-cc-CCCCCCC
Confidence 9999999999999999 77 7999975
No 22
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.9e-52 Score=406.77 Aligned_cols=258 Identities=24% Similarity=0.382 Sum_probs=227.8
Q ss_pred CcccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCC
Q 013607 63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR 142 (439)
Q Consensus 63 ~~~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~ 142 (439)
+..+.+.++. +++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++... .
T Consensus 8 ~~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~----~ 81 (266)
T PRK08139 8 TEAPLLLRED-RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAG-KAFCAGHDLKEMRAA----R 81 (266)
T ss_pred ccCCceEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCC-CcceeccCHHHHhcc----c
Confidence 4567788885 799999999999999999999999999999999999999999999998 899999999987531 1
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCC
Q 013607 143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG 222 (439)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G 222 (439)
.......++....+++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++| +++|++++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG 160 (266)
T PRK08139 82 GLAYFRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVP 160 (266)
T ss_pred chhHHHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhC
Confidence 1122334455556788899999999999999999999999999999999999999999999999999765 578999999
Q ss_pred chHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHH
Q 013607 223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQI 302 (439)
Q Consensus 223 ~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i 302 (439)
.. ++++|++||+.++ |+||+++||||+++|++++.+.+.
T Consensus 161 ~~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~--------------------------------------- 199 (266)
T PRK08139 161 RK-QAMEMLLTGEFID-AATAREWGLVNRVVPADALDAAVA--------------------------------------- 199 (266)
T ss_pred HH-HHHHHHHcCCccC-HHHHHHcCCccEeeChhHHHHHHH---------------------------------------
Confidence 98 9999999999999 999999999999999887764332
Q ss_pred HhhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHH
Q 013607 303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYR 382 (439)
Q Consensus 303 ~~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~ 382 (439)
+||+ +|++.||.+++.+|+++++.. ..+++++++.|.+
T Consensus 200 -----------------------------~~a~----~la~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~ 237 (266)
T PRK08139 200 -----------------------------RLAA----VIAAKSPAAVRIGKEAFYRQA---------EMPLADAYAYAGD 237 (266)
T ss_pred -----------------------------HHHH----HHHhCCHHHHHHHHHHHHHhc---------cCCHHHHHHHHHH
Confidence 3343 799999999999999999876 5679999999999
Q ss_pred HHHhhCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 383 VALRSSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 383 ~~~~~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
.+...+.++|++||+++|+ +| |+|+|..
T Consensus 238 ~~~~~~~~~d~~eg~~af~-~k-r~p~~~~ 265 (266)
T PRK08139 238 VMAENMMAEDAEEGIDAFL-EK-RPPEWRG 265 (266)
T ss_pred HHHHHhcCchHHHHHHHHh-cC-CCCCCCC
Confidence 9999999999999999999 77 7999975
No 23
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-52 Score=404.97 Aligned_cols=254 Identities=26% Similarity=0.351 Sum_probs=225.1
Q ss_pred ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCc
Q 013607 67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (439)
Q Consensus 67 ~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 146 (439)
.+.++. +++|++||||||++ |+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.... ....
T Consensus 3 ~i~~~~-~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~----~~~~ 75 (257)
T PRK07658 3 FLSVRV-EDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEG-RFFSAGADIKEFTSVT----EAEQ 75 (257)
T ss_pred eEEEEe-eCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceEeCcCHHHHhccC----chhh
Confidence 567774 78999999999986 999999999999999999999999999999998 8999999999875311 1112
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHH
Q 013607 147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV 226 (439)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~ 226 (439)
...+......++..|..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 76 ~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~-~ 154 (257)
T PRK07658 76 ATELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKA-K 154 (257)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHH-H
Confidence 233444455678899999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHhhc
Q 013607 227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCF 306 (439)
Q Consensus 227 a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F 306 (439)
+++|++||+.++ |+||+++||||++||++++.+.+.
T Consensus 155 a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------- 190 (257)
T PRK07658 155 ALEMMLTSEPIT-GAEALKWGLVNGVFPEETLLDDAK------------------------------------------- 190 (257)
T ss_pred HHHHHHcCCCcC-HHHHHHcCCcCeecChhHHHHHHH-------------------------------------------
Confidence 999999999999 999999999999999887764222
Q ss_pred CCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHHHh
Q 013607 307 SSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALR 386 (439)
Q Consensus 307 ~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~ 386 (439)
++|+ +|++.||.+++.+|++++... ..++.+.++.|.+.+..
T Consensus 191 -------------------------~~a~----~l~~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~ 232 (257)
T PRK07658 191 -------------------------KLAK----KIAGKSPATTRAVLELLQTTK---------SSSYYEGVKREAKIFGE 232 (257)
T ss_pred -------------------------HHHH----HHHhCCHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHH
Confidence 3343 689999999999999999876 56799999999999999
Q ss_pred hCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 387 SSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 387 ~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
++.++|++||+++|+ +| |+|+|++
T Consensus 233 ~~~~~~~~egi~af~-~k-r~p~~~~ 256 (257)
T PRK07658 233 VFTSEDAKEGVQAFL-EK-RKPSFSG 256 (257)
T ss_pred HhCCHHHHHHHHHHH-cC-CCCCCCC
Confidence 999999999999999 67 7999975
No 24
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=1.9e-52 Score=404.79 Aligned_cols=254 Identities=25% Similarity=0.362 Sum_probs=221.5
Q ss_pred EEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchH
Q 013607 69 KGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVP 148 (439)
Q Consensus 69 ~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 148 (439)
.++. +++|++||||||++.|+||.+|+.+|.++++.++.|+ +++|||||.| ++||+|+|++++.... ....+...
T Consensus 2 ~~e~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g-~~F~aG~Dl~~~~~~~--~~~~~~~~ 76 (256)
T TIGR02280 2 LSAL-EAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAG-RGFCAGQDLSERNPTP--GGAPDLGR 76 (256)
T ss_pred eEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCC-CCcccCcCHHHHhhcc--ccchhHHH
Confidence 4564 7899999999999999999999999999999999999 9999999998 7999999999875311 00111111
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHHHH
Q 013607 149 KVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGA 228 (439)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~a~ 228 (439)
.+......++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus 77 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~-~a~ 155 (256)
T TIGR02280 77 TIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRA-RAM 155 (256)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHH-HHH
Confidence 1222223467789999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHhhcCC
Q 013607 229 YLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSS 308 (439)
Q Consensus 229 ~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~ 308 (439)
+|++||+.++ |+||+++||||+++|++++.+.+.
T Consensus 156 ~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------- 189 (256)
T TIGR02280 156 GLAMLGEKLD-ARTAASWGLIWQVVDDAALMDEAQ--------------------------------------------- 189 (256)
T ss_pred HHHHcCCCCC-HHHHHHcCCcceeeChHHHHHHHH---------------------------------------------
Confidence 9999999999 999999999999999887764322
Q ss_pred CCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHHHhhC
Q 013607 309 EKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSS 388 (439)
Q Consensus 309 ~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~ 388 (439)
+||+ +|++.||.+++.+|++++... ...+.++++.|.+.+..++
T Consensus 190 -----------------------~~a~----~la~~~~~~~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~~~ 233 (256)
T TIGR02280 190 -----------------------ALAV----HLAAQPTRGLALTKRAIQAAA---------TNSLDTQLDLERDLQRELG 233 (256)
T ss_pred -----------------------HHHH----HHHhCCHHHHHHHHHHHHhhh---------cCCHHHHHHHHHHHHHHHh
Confidence 4444 799999999999999999876 5679999999999999999
Q ss_pred CCChHHHHHHHHHhCCCCCCCCCC
Q 013607 389 LRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 389 ~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
.++|++||+++|+ +| |+|+|++
T Consensus 234 ~~~d~~eg~~af~-~k-r~p~~~~ 255 (256)
T TIGR02280 234 RSADYAEGVTAFL-DK-RNPQFTG 255 (256)
T ss_pred cChhHHHHHHHHH-cC-CCCCCCC
Confidence 9999999999999 77 7999975
No 25
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.9e-52 Score=405.13 Aligned_cols=259 Identities=22% Similarity=0.301 Sum_probs=223.5
Q ss_pred ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCC
Q 013607 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (439)
Q Consensus 65 ~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 144 (439)
++.+.++. +++|++||||||+++|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++.... ...
T Consensus 4 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~---~~~ 78 (263)
T PRK07799 4 GPHALVEQ-RGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAG-GAFCAGMDLKAATKKP---PGD 78 (263)
T ss_pred CceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CccccccCHHHHhhcc---ccc
Confidence 46688885 789999999999999999999999999999999999999999999998 8999999999876421 001
Q ss_pred CchHH-HHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCc
Q 013607 145 PLVPK-VFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG 223 (439)
Q Consensus 145 ~~~~~-~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~ 223 (439)
..... +.......+..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~ 158 (263)
T PRK07799 79 SFKDGSYDPSRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPY 158 (263)
T ss_pred hhhhhhhhhhHHHHHHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCH
Confidence 10010 11111122335789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHH
Q 013607 224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT 303 (439)
Q Consensus 224 ~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~ 303 (439)
. ++++|++||+.++ |+||+++||||++||++++.+.+.
T Consensus 159 ~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------- 196 (263)
T PRK07799 159 T-VACDLLLTGRHIT-AAEAKEIGLIGHVVPDGQALDKAL---------------------------------------- 196 (263)
T ss_pred H-HHHHHHHcCCCCC-HHHHHHcCCccEecCcchHHHHHH----------------------------------------
Confidence 8 9999999999999 999999999999999988764222
Q ss_pred hhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHH
Q 013607 304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV 383 (439)
Q Consensus 304 ~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~ 383 (439)
++|+ +|++.||.+++.+|++++... ..++.++++.|.+.
T Consensus 197 ----------------------------~~a~----~~~~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~ 235 (263)
T PRK07799 197 ----------------------------ELAE----LINANGPLAVQAILRTIRETE---------GMHENEAFKIDTKI 235 (263)
T ss_pred ----------------------------HHHH----HHHhcChHHHHHHHHHHHHhh---------cCCHHHHHHHHHHH
Confidence 3444 789999999999999999876 56799999999999
Q ss_pred HHhhCCCChHHHHHHHHHhCCCCCCCCCCC
Q 013607 384 ALRSSLRSDFAEGVRAVLVDKDQNPKWNPA 413 (439)
Q Consensus 384 ~~~~~~~~d~~egv~a~l~~K~r~P~w~~~ 413 (439)
+..++.++|++||+++|+ +| |+|+|+.+
T Consensus 236 ~~~~~~~~~~~egi~af~-~~-r~p~~~~~ 263 (263)
T PRK07799 236 GIPVFLSEDAKEGPRAFA-EK-RAPNFQGR 263 (263)
T ss_pred HHHHhcCccHHHHHHHHH-cc-CCCCCCCC
Confidence 999999999999999999 67 79999753
No 26
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3e-52 Score=404.81 Aligned_cols=260 Identities=21% Similarity=0.307 Sum_probs=224.1
Q ss_pred cccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCC
Q 013607 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (439)
Q Consensus 64 ~~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~ 143 (439)
.++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..... ..
T Consensus 2 ~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~--~~ 77 (262)
T PRK05995 2 MYETLEIEQ-RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAG-KAFCAGADLNWMKKMAG--YS 77 (262)
T ss_pred CCceEEEEe-eCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CccccCcCHHHHhhhcc--cC
Confidence 466788885 789999999999999999999999999999999999999999999998 89999999998753210 01
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCc
Q 013607 144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG 223 (439)
Q Consensus 144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~ 223 (439)
..........+..++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+++ +++++|.
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~-l~~~vg~ 156 (262)
T PRK05995 78 DDENRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPY-VIRAMGE 156 (262)
T ss_pred chhhhhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHHH-HHHHhCH
Confidence 111111233455678889999999999999999999999999999999999999999999999999887764 8899999
Q ss_pred hHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHH
Q 013607 224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT 303 (439)
Q Consensus 224 ~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~ 303 (439)
. ++++|++||+.++ |+||+++||||++||++++.+.+.
T Consensus 157 ~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------- 194 (262)
T PRK05995 157 R-AARRYFLTAERFD-AAEALRLGLVHEVVPAEALDAKVD---------------------------------------- 194 (262)
T ss_pred H-HHHHHHHcCCccC-HHHHHHcCCCCeecCHHHHHHHHH----------------------------------------
Confidence 8 9999999999999 999999999999999877664322
Q ss_pred hhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHH-HHHHHH
Q 013607 304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGV-MKYEYR 382 (439)
Q Consensus 304 ~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~-l~~e~~ 382 (439)
++|+ +|++.||.+++.+|++++... ..++.+. ++.|..
T Consensus 195 ----------------------------~~a~----~la~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~~e~~ 233 (262)
T PRK05995 195 ----------------------------ELLA----ALVANSPQAVRAGKRLVRDVA---------GRPIDAALIADTAS 233 (262)
T ss_pred ----------------------------HHHH----HHHhCCHHHHHHHHHHHHhhh---------cCChhhHHHHHHHH
Confidence 3443 788999999999999999765 4678888 888888
Q ss_pred HHHhhCCCChHHHHHHHHHhCCCCCCCCCCC
Q 013607 383 VALRSSLRSDFAEGVRAVLVDKDQNPKWNPA 413 (439)
Q Consensus 383 ~~~~~~~~~d~~egv~a~l~~K~r~P~w~~~ 413 (439)
.+..++.++|++||+++|+ +| |+|.|+++
T Consensus 234 ~~~~~~~~~d~~e~~~af~-~k-r~p~~~~~ 262 (262)
T PRK05995 234 RIALIRATEEAREGVAAFL-EK-RKPAWRGR 262 (262)
T ss_pred HHHHHhcCHHHHHHHHHHh-cC-CCCCCCCC
Confidence 8888999999999999999 77 79999864
No 27
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.2e-52 Score=401.93 Aligned_cols=251 Identities=20% Similarity=0.280 Sum_probs=218.7
Q ss_pred cceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCC
Q 013607 66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP 145 (439)
Q Consensus 66 ~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 145 (439)
+.+.++. +++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++... . ...
T Consensus 3 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~---~-~~~ 76 (254)
T PRK08252 3 DEVLVER-RGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAG-GTFCAGMDLKAFARG---E-RPS 76 (254)
T ss_pred ceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CceEcCcCHHHHhcc---c-chh
Confidence 3577774 789999999999999999999999999999999999999999999997 899999999987541 1 111
Q ss_pred chHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchH
Q 013607 146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS 225 (439)
Q Consensus 146 ~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~ 225 (439)
.....+..++ ...+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..
T Consensus 77 ---~~~~~~~~~~--~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~- 150 (254)
T PRK08252 77 ---IPGRGFGGLT--ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYH- 150 (254)
T ss_pred ---hhHHHHHHHH--HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHH-
Confidence 1111111221 2479999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHhh
Q 013607 226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSC 305 (439)
Q Consensus 226 ~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~ 305 (439)
++++|++||++++ |+||+++||||+|||++++.+.+.
T Consensus 151 ~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------ 187 (254)
T PRK08252 151 IAMELALTGDMLT-AERAHELGLVNRLTEPGQALDAAL------------------------------------------ 187 (254)
T ss_pred HHHHHHHcCCccC-HHHHHHcCCcceecCcchHHHHHH------------------------------------------
Confidence 9999999999999 999999999999999887764222
Q ss_pred cCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHHH
Q 013607 306 FSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVAL 385 (439)
Q Consensus 306 F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~ 385 (439)
++|+ +|++.||.+++.+|++++... ..++.++++.|...+.
T Consensus 188 --------------------------~~a~----~l~~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~~~ 228 (254)
T PRK08252 188 --------------------------ELAE----RIAANGPLAVAASKRIVVESG---------DWSEDEMFARQRELIA 228 (254)
T ss_pred --------------------------HHHH----HHHhCCHHHHHHHHHHHHHhh---------cCCHHHHHHHHHHHHH
Confidence 3333 789999999999999999876 5679999999999999
Q ss_pred hhCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 386 RSSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 386 ~~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
.++.++|++||+++|+ +| |+|+|..
T Consensus 229 ~~~~~~~~~eg~~af~-~k-r~p~~~~ 253 (254)
T PRK08252 229 PVFTSADAKEGATAFA-EK-RAPVWTG 253 (254)
T ss_pred HHhcCchHHHHHHHHh-cC-CCCCCCC
Confidence 9999999999999999 67 7999975
No 28
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.5e-52 Score=402.78 Aligned_cols=251 Identities=21% Similarity=0.290 Sum_probs=222.1
Q ss_pred cccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCC
Q 013607 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (439)
Q Consensus 64 ~~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~ 143 (439)
..+++.++..+++|++||||||++.|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++... .
T Consensus 4 ~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~-----~ 78 (256)
T PRK06143 4 LNAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATL-----D 78 (256)
T ss_pred ccccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhc-----C
Confidence 34557777557899999999999999999999999999999999999999999999986799999999987541 1
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCc
Q 013607 144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG 223 (439)
Q Consensus 144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~ 223 (439)
......+...+..++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ |++|++++|++++|.
T Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~ 157 (256)
T PRK06143 79 QASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGW 157 (256)
T ss_pred hhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCH
Confidence 1122334555667888999999999999999999999999999999999999999999999998 888889999999999
Q ss_pred hHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHH
Q 013607 224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT 303 (439)
Q Consensus 224 ~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~ 303 (439)
. +++++++||+.++ |+||+++||||++||++++.+.+.
T Consensus 158 ~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------- 195 (256)
T PRK06143 158 A-RTRWLLLTGETID-AAQALAWGLVDRVVPLAELDAAVE---------------------------------------- 195 (256)
T ss_pred H-HHHHHHHcCCcCC-HHHHHHCCCcCeecCHHHHHHHHH----------------------------------------
Confidence 8 9999999999999 999999999999999877764322
Q ss_pred hhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHH
Q 013607 304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV 383 (439)
Q Consensus 304 ~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~ 383 (439)
++|+ +|+.+||.+++.+|++++... ...+.+.++.|.+.
T Consensus 196 ----------------------------~~a~----~la~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~ 234 (256)
T PRK06143 196 ----------------------------RLAA----SLAGCGPQALRQQKRLLREWE---------DMPLDVAIDDSVAE 234 (256)
T ss_pred ----------------------------HHHH----HHHcCCHHHHHHHHHHHHHHc---------cCCHHHHHHHHHHH
Confidence 3443 799999999999999999875 56799999999999
Q ss_pred HHhhCCCChHHHHHHHHHhCC
Q 013607 384 ALRSSLRSDFAEGVRAVLVDK 404 (439)
Q Consensus 384 ~~~~~~~~d~~egv~a~l~~K 404 (439)
+...+.++|++||+++|+ +|
T Consensus 235 ~~~~~~~~d~~e~~~af~-ek 254 (256)
T PRK06143 235 FGAAFLTGEPQRHMAAFL-NR 254 (256)
T ss_pred HHHHhcChHHHHHHHHHH-hh
Confidence 999999999999999999 66
No 29
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.7e-52 Score=405.02 Aligned_cols=259 Identities=21% Similarity=0.297 Sum_probs=224.6
Q ss_pred ceEEEEecCcEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcC-CCC
Q 013607 67 FVKGNVHPNGVAVITLDRPKALNAMNL-DMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD-RNT 144 (439)
Q Consensus 67 ~i~~~~~~~~V~~Itlnrp~~~Nal~~-~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~-~~~ 144 (439)
.+.++. +++|++||||||++.|++|. +|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++....... ...
T Consensus 4 ~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~ 81 (266)
T PRK09245 4 FLLVER-DGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAG-TAFSSGGNVKDMRARVGAFGGSP 81 (266)
T ss_pred ceEEEE-ECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccCcCHHHHhhccccccccc
Confidence 477774 78999999999999999995 9999999999999999999999999998 8999999999875421100 011
Q ss_pred Cch-HHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCc
Q 013607 145 PLV-PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG 223 (439)
Q Consensus 145 ~~~-~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~ 223 (439)
... ..+...+..++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+++++++++|.
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~ 161 (266)
T PRK09245 82 ADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGM 161 (266)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhH
Confidence 111 1222334467788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHH
Q 013607 224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT 303 (439)
Q Consensus 224 ~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~ 303 (439)
. ++++|++||++++ |+||+++||||+++|++++.+.+.
T Consensus 162 ~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------- 199 (266)
T PRK09245 162 A-RAAEMAFTGDAID-AATALEWGLVSRVVPADQLLPAAR---------------------------------------- 199 (266)
T ss_pred H-HHHHHHHcCCCcC-HHHHHHcCCcceecCHHHHHHHHH----------------------------------------
Confidence 8 9999999999999 999999999999999877764222
Q ss_pred hhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHH
Q 013607 304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV 383 (439)
Q Consensus 304 ~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~ 383 (439)
+||+ +|+++||.+++.+|++++... ..++.+.+..|.+.
T Consensus 200 ----------------------------~~a~----~l~~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~ 238 (266)
T PRK09245 200 ----------------------------ALAE----RIAANPPHALRLTKRLLREGQ---------HASLDTLLELSAAY 238 (266)
T ss_pred ----------------------------HHHH----HHHhCCHHHHHHHHHHHHHhh---------cCCHHHHHHHHHHH
Confidence 3444 799999999999999999875 56799999999999
Q ss_pred HHhhCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 384 ALRSSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 384 ~~~~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
....+.++|++||+++|+ +| |+|.|+.
T Consensus 239 ~~~~~~~~d~~eg~~af~-~k-r~p~~~~ 265 (266)
T PRK09245 239 QALAHHTADHREAVDAFL-EK-RPPVFTG 265 (266)
T ss_pred HHHHhcCHhHHHHHHHHH-cC-CCCCCCC
Confidence 999999999999999999 77 7999975
No 30
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3e-52 Score=403.28 Aligned_cols=252 Identities=20% Similarity=0.230 Sum_probs=219.1
Q ss_pred EEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchH
Q 013607 69 KGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVP 148 (439)
Q Consensus 69 ~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 148 (439)
.++. +++|++||||||++.|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.... .. . ..
T Consensus 2 ~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g-~~F~aG~Dl~~~~~~~-~~---~-~~ 74 (255)
T PRK06563 2 SRER-RGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHG-EHFTAGLDLADVAPKL-AA---G-GF 74 (255)
T ss_pred eEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CCCcCCcCHHHHhhcc-cc---c-hh
Confidence 4554 689999999999999999999999999999999999999999999998 7999999999875421 00 0 11
Q ss_pred HHHHHHHH-HHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHHH
Q 013607 149 KVFTAEYS-LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG 227 (439)
Q Consensus 149 ~~~~~~~~-l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~a 227 (439)
.+...... +...+..+||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.. ++
T Consensus 75 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~-~a 153 (255)
T PRK06563 75 PFPEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWG-NA 153 (255)
T ss_pred hhhhhhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHH-HH
Confidence 12211222 22357899999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred HHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHhhcC
Q 013607 228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFS 307 (439)
Q Consensus 228 ~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~ 307 (439)
++|++||+.++ |+||+++||||+++|++++.+.+.
T Consensus 154 ~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------- 188 (255)
T PRK06563 154 MRYLLTGDEFD-AQEALRLGLVQEVVPPGEQLERAI-------------------------------------------- 188 (255)
T ss_pred HHHHHcCCCcC-HHHHHHcCCCcEeeCHHHHHHHHH--------------------------------------------
Confidence 99999999999 999999999999999877654222
Q ss_pred CCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHHHhh
Q 013607 308 SEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRS 387 (439)
Q Consensus 308 ~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~ 387 (439)
+||+ +|++.||.+++.+|++++... ..++.++++.|...+..+
T Consensus 189 ------------------------~~a~----~la~~~~~a~~~~K~~~~~~~---------~~~~~~~~~~e~~~~~~~ 231 (255)
T PRK06563 189 ------------------------ELAE----RIARAAPLGVQATLASARAAV---------REGEAAAAAQLPPELRPL 231 (255)
T ss_pred ------------------------HHHH----HHHhcCHHHHHHHHHHHHHhh---------cCCHHHHHHHHHHHHHHH
Confidence 4444 788999999999999999875 567999999999999999
Q ss_pred CCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 388 SLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 388 ~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
+.++|++||+++|+ +| |+|.|++
T Consensus 232 ~~~~d~~eg~~af~-~k-r~p~~~~ 254 (255)
T PRK06563 232 FTSEDAKEGVQAFL-ER-RPARFKG 254 (255)
T ss_pred hcCchHHHHHHHHh-cC-CCCCCCC
Confidence 99999999999999 77 7999975
No 31
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.1e-52 Score=406.17 Aligned_cols=258 Identities=22% Similarity=0.307 Sum_probs=226.1
Q ss_pred ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCc
Q 013607 67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (439)
Q Consensus 67 ~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 146 (439)
.+.++. +++|++|+||||++.|+|+.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++..... ......
T Consensus 18 ~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~FsaG~Dl~~~~~~~~-~~~~~~ 94 (277)
T PRK08258 18 HFLWEV-DDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAG-GNFCSGGDVHEIIGPLT-KMDMPE 94 (277)
T ss_pred ceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCC-CCcccccCHHHHhcccc-ccChhH
Confidence 677875 799999999999999999999999999999999999999999999997 89999999998743110 111112
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCC-ChhHHHHHhhCCCchH
Q 013607 147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFP-DVGFSYIAAKGPGGGS 225 (439)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P-~~G~~~~l~r~~G~~~ 225 (439)
...+......++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++| ++|++++|++++|..
T Consensus 95 ~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~- 173 (277)
T PRK08258 95 LLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQG- 173 (277)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHH-
Confidence 223444445678899999999999999999999999999999999999999999999999995 788999999999998
Q ss_pred HHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHhh
Q 013607 226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSC 305 (439)
Q Consensus 226 ~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~ 305 (439)
++++|++||+.++ |+||+++||||+++|++++.+.+.
T Consensus 174 ~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------ 210 (277)
T PRK08258 174 RASELLYTGRSMS-AEEGERWGFFNRLVEPEELLAEAQ------------------------------------------ 210 (277)
T ss_pred HHHHHHHcCCCCC-HHHHHHcCCCcEecCHHHHHHHHH------------------------------------------
Confidence 9999999999999 999999999999999877664222
Q ss_pred cCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHHH
Q 013607 306 FSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVAL 385 (439)
Q Consensus 306 F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~ 385 (439)
++|+ +|++.||.+++.+|++++... ..++++.++.|...+.
T Consensus 211 --------------------------~~a~----~la~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~~~ 251 (277)
T PRK08258 211 --------------------------ALAR----RLAAGPTFAHGMTKTMLHQEW---------DMGLEEAIEAEAQAQA 251 (277)
T ss_pred --------------------------HHHH----HHHhCCHHHHHHHHHHHHhhc---------cCCHHHHHHHHHHHHH
Confidence 3444 799999999999999999875 5679999999999999
Q ss_pred hhCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 386 RSSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 386 ~~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
.++.++|++||+++|+ +| |+|+|++
T Consensus 252 ~~~~s~d~~eg~~af~-ek-r~p~~~~ 276 (277)
T PRK08258 252 ICMQTEDFRRAYEAFV-AK-RKPVFEG 276 (277)
T ss_pred HHhcCchHHHHHHHHh-cC-CCCCCCC
Confidence 9999999999999999 78 7999975
No 32
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.7e-52 Score=403.39 Aligned_cols=259 Identities=22% Similarity=0.327 Sum_probs=222.0
Q ss_pred ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCC
Q 013607 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (439)
Q Consensus 65 ~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 144 (439)
++.+.++..+++|++|+||||++.|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++..... . ..
T Consensus 3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~-~-~~ 79 (262)
T PRK07468 3 FETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAG-KSFCAGGDLGWMRAQMT-A-DR 79 (262)
T ss_pred cceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CcccCCcCHHHHHhhcc-c-ch
Confidence 566778753468999999999999999999999999999999999999999999998 89999999998753211 0 11
Q ss_pred CchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCch
Q 013607 145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG 224 (439)
Q Consensus 145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~ 224 (439)
.........+..++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++ +|..
T Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~~~-vG~~ 158 (262)
T PRK07468 80 ATRIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVAR-MGEA 158 (262)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHHhh-ccHH
Confidence 111122334456788999999999999999999999999999999999999999999999999999999986655 8998
Q ss_pred HHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHh
Q 013607 225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITS 304 (439)
Q Consensus 225 ~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~ 304 (439)
++++|++||++++ |+||+++||||+++|.+++.+.+.
T Consensus 159 -~a~~lll~g~~~~-a~eA~~~Glv~~v~~~~~l~~~~~----------------------------------------- 195 (262)
T PRK07468 159 -NARRVFMSARLFD-AEEAVRLGLLSRVVPAERLDAAVE----------------------------------------- 195 (262)
T ss_pred -HHHHHHHhCCccC-HHHHHHcCCcceecCHHHHHHHHH-----------------------------------------
Confidence 9999999999999 999999999999999877654322
Q ss_pred hcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHH
Q 013607 305 CFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVA 384 (439)
Q Consensus 305 ~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~ 384 (439)
++|+ ++++.||.+++.+|++++... ...+.++++.|...+
T Consensus 196 ---------------------------~~a~----~l~~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~ 235 (262)
T PRK07468 196 ---------------------------AEVT----PYLSCAPGAVAAAKALVRALG---------APIDEAVIDATIEAL 235 (262)
T ss_pred ---------------------------HHHH----HHHhcCHHHHHHHHHHHHhhh---------ccChHHHHHHHHHHH
Confidence 3333 688999999999999998765 456788999999999
Q ss_pred HhhCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 385 LRSSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 385 ~~~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
...+.++|++||+++|+ +| |+|+|+.
T Consensus 236 ~~~~~s~d~~e~~~af~-~k-r~~~~~~ 261 (262)
T PRK07468 236 ADTWETEEAREGIAAFF-DK-RAPAWRG 261 (262)
T ss_pred HHHhcCHHHHHHHHHHH-cC-CCCCCCC
Confidence 99999999999999999 78 7999964
No 33
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.7e-52 Score=403.73 Aligned_cols=263 Identities=23% Similarity=0.364 Sum_probs=228.0
Q ss_pred CcccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC-CceEEEEEeCCCCCcccCCcchhhhHhhhcC
Q 013607 63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDP-RVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD 141 (439)
Q Consensus 63 ~~~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~-~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~ 141 (439)
|+|+.+.++. +++|++|+||||+++|++|.+|+.+|.++++.++.|+ ++++|||||.| ++||+|+|++++.......
T Consensus 1 ~~~~~v~~~~-~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~ 78 (266)
T PRK05981 1 MQFKKVTLDF-DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAG-RGFCTGANLQGRGSGGRES 78 (266)
T ss_pred CCcceEEEEe-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CCcccccCHHhhhcccccc
Confidence 4577888885 7999999999999999999999999999999999876 49999999998 7999999999875421000
Q ss_pred C-CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhC
Q 013607 142 R-NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG 220 (439)
Q Consensus 142 ~-~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~ 220 (439)
. .......+...+..++..|..+||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~ 158 (266)
T PRK05981 79 DSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRL 158 (266)
T ss_pred cccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHH
Confidence 0 001112233445568889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchh
Q 013607 221 PGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLP 300 (439)
Q Consensus 221 ~G~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 300 (439)
+|.. ++++|++||+.++ |+||+++|||++++|++++.+.+.
T Consensus 159 vg~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~~~~~a~------------------------------------- 199 (266)
T PRK05981 159 VGKA-RAMELSLLGEKLP-AETALQWGLVNRVVDDAELMAEAM------------------------------------- 199 (266)
T ss_pred hHHH-HHHHHHHhCCCcC-HHHHHHcCCceEeeCHhHHHHHHH-------------------------------------
Confidence 9998 9999999999999 999999999999999887764222
Q ss_pred HHHhhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHH
Q 013607 301 QITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYE 380 (439)
Q Consensus 301 ~i~~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e 380 (439)
+||+ +++..||.+++.+|++++... ..++.+.++.|
T Consensus 200 -------------------------------~~a~----~l~~~~~~a~~~~K~~~~~~~---------~~~~~~~~~~e 235 (266)
T PRK05981 200 -------------------------------KLAH----ELANGPTVALGLIRKLYWDSP---------ENDFEEQLNLE 235 (266)
T ss_pred -------------------------------HHHH----HHHcCCHHHHHHHHHHHHHhh---------hcCHHHHHHHH
Confidence 4444 788999999999999998775 46799999999
Q ss_pred HHHHHhhCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 381 YRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 381 ~~~~~~~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
...+..++.++|++||+.+|+ +| |+|+|+.
T Consensus 236 ~~~~~~~~~s~d~~e~~~af~-~k-r~~~~~~ 265 (266)
T PRK05981 236 REAQRIAGKTEDFKEGVGAFL-QK-RPAQFKG 265 (266)
T ss_pred HHHHHHHhcChhHHHHHHHHh-cC-CCCCCCC
Confidence 999999999999999999999 77 7999975
No 34
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=5.6e-52 Score=401.44 Aligned_cols=255 Identities=20% Similarity=0.236 Sum_probs=215.0
Q ss_pred ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCC
Q 013607 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (439)
Q Consensus 65 ~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 144 (439)
|+.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++... ...
T Consensus 1 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~----~~~ 75 (256)
T TIGR03210 1 YEDILYEK-RNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGG----YDG 75 (256)
T ss_pred CCceEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcc----ccc
Confidence 35577875 7899999999999999999999999999999999999999999999986799999999987421 011
Q ss_pred CchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCch
Q 013607 145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG 224 (439)
Q Consensus 145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~ 224 (439)
...+......++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 76 --~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~ 153 (256)
T TIGR03210 76 --RGTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEK 153 (256)
T ss_pred --hhHHHHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHH
Confidence 111222344677889999999999999999999999999999999999999999999999998888899999999998
Q ss_pred HHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHh
Q 013607 225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITS 304 (439)
Q Consensus 225 ~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~ 304 (439)
++++|++||+.++ |+||+++||||++||++++.+.+.
T Consensus 154 -~A~~lll~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------- 190 (256)
T TIGR03210 154 -KAREIWYLCRRYT-AQEALAMGLVNAVVPHDQLDAEVQ----------------------------------------- 190 (256)
T ss_pred -HHHHHHHhCCCcC-HHHHHHcCCceeeeCHHHHHHHHH-----------------------------------------
Confidence 9999999999999 999999999999999877664322
Q ss_pred hcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHH
Q 013607 305 CFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVA 384 (439)
Q Consensus 305 ~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~ 384 (439)
++|+ +|++.||.+++.+|++++.... ...-.+. .|...+
T Consensus 191 ---------------------------~~a~----~ia~~~~~a~~~~K~~l~~~~~--------~~~~~~~--~~~~~~ 229 (256)
T TIGR03210 191 ---------------------------KWCD----EIVEKSPTAIAIAKRSFNMDTA--------HQRGIAG--MGMYAL 229 (256)
T ss_pred ---------------------------HHHH----HHHhCCHHHHHHHHHHHHHhhc--------ccchHHH--HHHHHH
Confidence 3444 7899999999999999987641 1111122 244566
Q ss_pred HhhCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 385 LRSSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 385 ~~~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
...+.++|++||+++|+ +| |+|.|++
T Consensus 230 ~~~~~~~d~~e~~~af~-~k-r~p~~~~ 255 (256)
T TIGR03210 230 KLYYDTAESREGVKAFQ-EK-RKPEFRK 255 (256)
T ss_pred HHHccChhHHHHHHHHh-cc-CCCCCCC
Confidence 77889999999999999 77 7999974
No 35
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=5.5e-52 Score=402.18 Aligned_cols=257 Identities=20% Similarity=0.238 Sum_probs=217.7
Q ss_pred cceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCC
Q 013607 66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP 145 (439)
Q Consensus 66 ~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 145 (439)
+.+.++..+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++.... .....
T Consensus 2 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~--~~~~~ 79 (259)
T TIGR01929 2 TDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYG--YIDDS 79 (259)
T ss_pred ceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhcc--ccchh
Confidence 3466663268999999999999999999999999999999999999999999999867999999999764210 00011
Q ss_pred chHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchH
Q 013607 146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS 225 (439)
Q Consensus 146 ~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~ 225 (439)
. . .......++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..
T Consensus 80 ~-~-~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~- 156 (259)
T TIGR01929 80 G-V-HRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQK- 156 (259)
T ss_pred h-H-HHHHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHH-
Confidence 0 0 111234567789999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHhh
Q 013607 226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSC 305 (439)
Q Consensus 226 ~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~ 305 (439)
++++|++||+.++ |+||+++||||+|||++++.+.+.
T Consensus 157 ~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------ 193 (259)
T TIGR01929 157 KAREIWFLCRQYD-AEQALDMGLVNTVVPLADLEKETV------------------------------------------ 193 (259)
T ss_pred HHHHHHHhCCccC-HHHHHHcCCcccccCHHHHHHHHH------------------------------------------
Confidence 9999999999999 999999999999999877654222
Q ss_pred cCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHHH
Q 013607 306 FSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVAL 385 (439)
Q Consensus 306 F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~ 385 (439)
++|+ +|++.||.+++.+|++++... . .....+..|.+.+.
T Consensus 194 --------------------------~~a~----~la~~~~~a~~~~K~~l~~~~---------~-~~~~~~~~e~~~~~ 233 (259)
T TIGR01929 194 --------------------------RWCR----EILQKSPMAIRMLKAALNADC---------D-GQAGLQELAGNATM 233 (259)
T ss_pred --------------------------HHHH----HHHhCCHHHHHHHHHHHHhhh---------c-cchHHHHHHHHHHH
Confidence 3444 799999999999999998764 2 23455666778888
Q ss_pred hhCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 386 RSSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 386 ~~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
..+.++|++||+++|+ +| |+|+|+.
T Consensus 234 ~~~~~~d~~egi~af~-~k-r~p~~~~ 258 (259)
T TIGR01929 234 LFYMTEEGQEGRNAFL-EK-RQPDFSK 258 (259)
T ss_pred HHhcCccHHHHHHHHh-cc-CCCCCCC
Confidence 8899999999999999 78 7999974
No 36
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=5.6e-52 Score=403.31 Aligned_cols=260 Identities=23% Similarity=0.322 Sum_probs=220.9
Q ss_pred cccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCC
Q 013607 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (439)
Q Consensus 64 ~~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~ 143 (439)
.|+.+.++..+++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.... ...
T Consensus 3 ~~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~--~~~ 79 (265)
T PRK05674 3 DFQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRG-RHFSAGADLAWMQQSA--DLD 79 (265)
T ss_pred CcceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCcccCcCHHHHhhcc--ccc
Confidence 3778888853478999999999999999999999999999999999999999999998 8999999999875311 000
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCc
Q 013607 144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG 223 (439)
Q Consensus 144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~ 223 (439)
..........+..++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++ ++++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~ 158 (265)
T PRK05674 80 YNTNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGE 158 (265)
T ss_pred chhhhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCH
Confidence 00011123344567888999999999999999999999999999999999999999999999999988766 48899999
Q ss_pred hHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHH
Q 013607 224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT 303 (439)
Q Consensus 224 ~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~ 303 (439)
. ++++|+|||+.|+ |+||+++|||++|||++++.+.+.
T Consensus 159 ~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------- 196 (265)
T PRK05674 159 R-AARRYALTAERFD-GRRARELGLLAESYPAAELEAQVE---------------------------------------- 196 (265)
T ss_pred H-HHHHHHHhCcccC-HHHHHHCCCcceecCHHHHHHHHH----------------------------------------
Confidence 8 9999999999999 999999999999999877664222
Q ss_pred hhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHH-HHH
Q 013607 304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKY-EYR 382 (439)
Q Consensus 304 ~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~-e~~ 382 (439)
+||+ +|+++||.+++.+|++++... ..++.+.+.. +..
T Consensus 197 ----------------------------~~a~----~la~~~p~a~~~~K~~l~~~~---------~~~~~~~~~~~~~~ 235 (265)
T PRK05674 197 ----------------------------AWIA----NLLLNSPQALRASKDLLREVG---------DGELSPALRRYCEN 235 (265)
T ss_pred ----------------------------HHHH----HHHhcCHHHHHHHHHHHHHhh---------ccChhHHHHHHHHH
Confidence 4444 789999999999999999876 5667788765 456
Q ss_pred HHHhhCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 383 VALRSSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 383 ~~~~~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
.+...+.++|++||+++|+ +| |+|+|+.
T Consensus 236 ~~~~~~~s~d~~e~~~af~-~k-r~p~~~~ 263 (265)
T PRK05674 236 AIARIRVSAEGQEGLRAFL-EK-RTPAWQT 263 (265)
T ss_pred HHHHHhcCHHHHHHHHHHH-cc-CCCCCCC
Confidence 7777889999999999999 67 7999973
No 37
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.6e-52 Score=401.08 Aligned_cols=255 Identities=27% Similarity=0.367 Sum_probs=226.1
Q ss_pred ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCC
Q 013607 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (439)
Q Consensus 65 ~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 144 (439)
++.+.++. +++|++|+||||++.|++|.+|+.+|.++++.+ .|+++++|||+|.| ++||+|+|++++.... ..
T Consensus 5 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g-~~F~aG~Dl~~~~~~~----~~ 77 (260)
T PRK07659 5 MESVVVKY-EGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNG-RGFSAGGDIKMMLSSN----DE 77 (260)
T ss_pred CceEEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCC-CCcccccCHHHHhhcc----Cc
Confidence 45688885 799999999999999999999999999999999 58899999999997 7999999999875411 12
Q ss_pred CchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCch
Q 013607 145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG 224 (439)
Q Consensus 145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~ 224 (439)
.....++...++++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~ 157 (260)
T PRK07659 78 SKFDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGEN 157 (260)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHH
Confidence 22344556666788899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHh
Q 013607 225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITS 304 (439)
Q Consensus 225 ~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~ 304 (439)
++++|++||+.++ |+||+++||||++| ++++.+.+.
T Consensus 158 -~a~~l~ltg~~~~-a~eA~~~Glv~~vv-~~~~~~~a~----------------------------------------- 193 (260)
T PRK07659 158 -KAKQIIWEGKKLS-ATEALDLGLIDEVI-GGDFQTAAK----------------------------------------- 193 (260)
T ss_pred -HHHHHHHhCCccC-HHHHHHcCChHHHh-hhHHHHHHH-----------------------------------------
Confidence 9999999999999 99999999999999 666654222
Q ss_pred hcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHH
Q 013607 305 CFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVA 384 (439)
Q Consensus 305 ~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~ 384 (439)
++++ +|+++||.+++.+|++++... ..++.+.++.|.+.+
T Consensus 194 ---------------------------~~a~----~l~~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~~ 233 (260)
T PRK07659 194 ---------------------------QKIS----EWLQKPLKAMIETKQIYCELN---------RSQLEQVLQLEKRAQ 233 (260)
T ss_pred ---------------------------HHHH----HHHhCCHHHHHHHHHHHHhhh---------cCCHHHHHHHHHHHH
Confidence 3343 789999999999999999876 567999999999999
Q ss_pred HhhCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 385 LRSSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 385 ~~~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
...+.++|++||+.+|+ +| |+|+|+.
T Consensus 234 ~~~~~~~~~~egi~af~-~k-r~p~~~~ 259 (260)
T PRK07659 234 YAMRQTADHKEGIRAFL-EK-RLPVFKG 259 (260)
T ss_pred HHHhcCHhHHHHHHHHh-cC-CCCCCCC
Confidence 99999999999999999 77 7999975
No 38
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=1e-51 Score=400.65 Aligned_cols=258 Identities=17% Similarity=0.220 Sum_probs=223.5
Q ss_pred CcccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcccCCcchhhhHhhhcC
Q 013607 63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSG-PRAFCAGMDIKGVVAEIQKD 141 (439)
Q Consensus 63 ~~~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g-~~~F~aG~Dl~~~~~~~~~~ 141 (439)
|+++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+ +++|||||.| +++||+|+|++++....
T Consensus 1 ~~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~--- 75 (261)
T PRK11423 1 MSMQYVNVVT-INKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGG--- 75 (261)
T ss_pred CCccceEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhcc---
Confidence 4567788885 7999999999999999999999999999999999988 9999999963 48999999999874311
Q ss_pred CCCCchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCC
Q 013607 142 RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP 221 (439)
Q Consensus 142 ~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~ 221 (439)
.+ ...+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++
T Consensus 76 --~~-~~~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~v 152 (261)
T PRK11423 76 --RD-PLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDA 152 (261)
T ss_pred --cc-HHHHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHh
Confidence 11 123344455678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhH
Q 013607 222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQ 301 (439)
Q Consensus 222 G~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 301 (439)
|.. ++++|+++|++++ |+||+++||||+|||++++++.+.
T Consensus 153 g~~-~a~~l~l~g~~~~-a~eA~~~GLv~~vv~~~~l~~~a~-------------------------------------- 192 (261)
T PRK11423 153 GFH-IVKEMFFTASPIT-AQRALAVGILNHVVEVEELEDFTL-------------------------------------- 192 (261)
T ss_pred HHH-HHHHHHHcCCCcC-HHHHHHcCCcCcccCHHHHHHHHH--------------------------------------
Confidence 998 9999999999999 999999999999999877664222
Q ss_pred HHhhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCH-HHHHHHH
Q 013607 302 ITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKL-SGVMKYE 380 (439)
Q Consensus 302 i~~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l-~~~l~~e 380 (439)
++| ++|++.||.+++.+|++++... ....+ .++++.|
T Consensus 193 ------------------------------~~a----~~l~~~~~~a~~~~K~~~~~~~--------~~~~~~~~~~~~~ 230 (261)
T PRK11423 193 ------------------------------QMA----HHISEKAPLAIAVIKEQLRVLG--------EAHPMNPDEFERI 230 (261)
T ss_pred ------------------------------HHH----HHHHhcCHHHHHHHHHHHHhhc--------ccCCcchHHHHHH
Confidence 333 3799999999999999998654 11234 6788889
Q ss_pred HHHHHhhCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 381 YRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 381 ~~~~~~~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
.+....++.++|++||+.+|+ +| |+|+|+.
T Consensus 231 ~~~~~~~~~s~d~~eg~~af~-~k-r~p~~~~ 260 (261)
T PRK11423 231 QGLRRAVYDSEDYQEGMNAFL-EK-RKPVFVG 260 (261)
T ss_pred HHHHHHHhCChhHHHHHHHHh-cc-CCCCCCC
Confidence 999999999999999999999 78 7999975
No 39
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.5e-52 Score=402.41 Aligned_cols=260 Identities=20% Similarity=0.255 Sum_probs=219.5
Q ss_pred CcccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCC
Q 013607 63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR 142 (439)
Q Consensus 63 ~~~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~ 142 (439)
..++.|.++.++++|++|+||||++.|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.... .
T Consensus 8 ~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~---~ 83 (268)
T PRK07327 8 ADYPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEG-KAFSAGGDLALVEEMA---D 83 (268)
T ss_pred CCCCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCC-CCcccccCHHHHhhcc---C
Confidence 34677888854578999999999999999999999999999999999999999999998 8999999999875421 1
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCC
Q 013607 143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG 222 (439)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G 222 (439)
.......++...+.++..|..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG 163 (268)
T PRK07327 84 DFEVRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCG 163 (268)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhC
Confidence 11112334445567788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHH
Q 013607 223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQI 302 (439)
Q Consensus 223 ~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i 302 (439)
.. +++++++||++++ |+||+++|||++++|++++.+.+.
T Consensus 164 ~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------- 202 (268)
T PRK07327 164 MA-KAKYYLLLCEPVS-GEEAERIGLVSLAVDDDELLPKAL--------------------------------------- 202 (268)
T ss_pred HH-HHHHHHHcCCccC-HHHHHHcCCcceecCHHHHHHHHH---------------------------------------
Confidence 98 9999999999999 999999999999999887764322
Q ss_pred HhhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHH
Q 013607 303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYR 382 (439)
Q Consensus 303 ~~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~ 382 (439)
++|+ +|+++||.+++.+|++++..... ....+++.+..|.
T Consensus 203 -----------------------------~~a~----~la~~~~~a~~~~K~~l~~~~~~------~~~~~~~~~~~~~- 242 (268)
T PRK07327 203 -----------------------------EVAE----RLAAGSQTAIRWTKYALNNWLRM------AGPTFDTSLALEF- 242 (268)
T ss_pred -----------------------------HHHH----HHHcCCHHHHHHHHHHHHHhhhh------hhhhHHHHHHHHH-
Confidence 3343 79999999999999999975310 0123555555443
Q ss_pred HHHhhCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 383 VALRSSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 383 ~~~~~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
..+.++|++||+.+|+ +| |+|+|++
T Consensus 243 ---~~~~~~d~~eg~~af~-ek-r~p~~~~ 267 (268)
T PRK07327 243 ---MGFSGPDVREGLASLR-EK-RAPDFPG 267 (268)
T ss_pred ---HHccChhHHHHHHHHH-hc-CCCCCCC
Confidence 4678999999999999 77 7999974
No 40
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-51 Score=399.09 Aligned_cols=255 Identities=23% Similarity=0.329 Sum_probs=226.7
Q ss_pred eEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCch
Q 013607 68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV 147 (439)
Q Consensus 68 i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 147 (439)
+.++. +++|++|+||||++.|++|.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.... .......
T Consensus 5 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~F~~G~Dl~~~~~~~--~~~~~~~ 80 (260)
T PRK07511 5 LLSRR-EGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAG-GFFCAGGNLNRLLENR--AKPPSVQ 80 (260)
T ss_pred eEEEe-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCC-CCcccCcCHHHHhhcc--cccchhH
Confidence 66774 799999999999999999999999999999999999999999999997 8999999999875421 0111223
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHHH
Q 013607 148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG 227 (439)
Q Consensus 148 ~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~a 227 (439)
..+....+.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus 81 ~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~-~a 159 (260)
T PRK07511 81 AASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQ-LA 159 (260)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHH-HH
Confidence 34555667788899999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred HHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHhhcC
Q 013607 228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFS 307 (439)
Q Consensus 228 ~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~ 307 (439)
++|++||+.++ |+||+++||||++||++++.+.+.
T Consensus 160 ~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~~~~~a~-------------------------------------------- 194 (260)
T PRK07511 160 TELLLEGKPIS-AERLHALGVVNRLAEPGQALAEAL-------------------------------------------- 194 (260)
T ss_pred HHHHHhCCCCC-HHHHHHcCCccEeeCchHHHHHHH--------------------------------------------
Confidence 99999999999 999999999999999877654222
Q ss_pred CCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHHHhh
Q 013607 308 SEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRS 387 (439)
Q Consensus 308 ~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~ 387 (439)
+||+ +++++||.+++.+|++++... ..++.++++.|.+.+..+
T Consensus 195 ------------------------~~a~----~l~~~~~~~~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~~ 237 (260)
T PRK07511 195 ------------------------ALAD----QLAAGSPNALARIKSLIADAP---------EATLAAQLEAERDHFVAS 237 (260)
T ss_pred ------------------------HHHH----HHHhCCHHHHHHHHHHHHhhh---------cCCHHHHHHHHHHHHHHH
Confidence 4444 688999999999999999876 568999999999999999
Q ss_pred CCCChHHHHHHHHHhCCCCCCCCC
Q 013607 388 SLRSDFAEGVRAVLVDKDQNPKWN 411 (439)
Q Consensus 388 ~~~~d~~egv~a~l~~K~r~P~w~ 411 (439)
+.++|+++|+++|+ +| |+|.|+
T Consensus 238 ~~~~~~~~~i~~f~-~~-r~~~~~ 259 (260)
T PRK07511 238 LHHADALEGIAAFL-EK-RAPDYK 259 (260)
T ss_pred hcCchHHHHHHHHh-cc-CCCCCC
Confidence 99999999999999 67 799996
No 41
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=1.6e-51 Score=399.36 Aligned_cols=253 Identities=22% Similarity=0.377 Sum_probs=220.2
Q ss_pred ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCc
Q 013607 67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (439)
Q Consensus 67 ~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 146 (439)
.+.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++.... ...
T Consensus 4 ~i~~~~-~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~---~~~-- 76 (261)
T PRK03580 4 SLHTTR-NGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGE---APD-- 76 (261)
T ss_pred eEEEEE-ECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccC---cch--
Confidence 477774 7899999999996 599999999999999999999999999999999867999999999875311 100
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHH
Q 013607 147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV 226 (439)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~ 226 (439)
..+....+..+..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 77 -~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~-~ 154 (261)
T PRK03580 77 -ADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPA-I 154 (261)
T ss_pred -hhhhhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHH-H
Confidence 11222234456789999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHhhc
Q 013607 227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCF 306 (439)
Q Consensus 227 a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F 306 (439)
++++++||+.++ |+||+++|||++++|++++.+.+.
T Consensus 155 a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------- 190 (261)
T PRK03580 155 ANEMVMTGRRMD-AEEALRWGIVNRVVPQAELMDRAR------------------------------------------- 190 (261)
T ss_pred HHHHHHhCCccC-HHHHHHcCCCcEecCHhHHHHHHH-------------------------------------------
Confidence 999999999999 999999999999999887765332
Q ss_pred CCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHH----
Q 013607 307 SSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYR---- 382 (439)
Q Consensus 307 ~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~---- 382 (439)
+||+ +|++.||.+++.+|++++... ..++.++++.|..
T Consensus 191 -------------------------~~a~----~la~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~ 232 (261)
T PRK03580 191 -------------------------ELAQ----QLVNSAPLAIAALKEIYRETS---------EMPVEEAYRYIRSGVLK 232 (261)
T ss_pred -------------------------HHHH----HHHhCCHHHHHHHHHHHHHHh---------cCCHHHHHHHHHhhhHH
Confidence 3444 789999999999999999876 5679999988864
Q ss_pred HHHhhCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 383 VALRSSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 383 ~~~~~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
.+..++.++|++||+++|+ +| |+|+|+.
T Consensus 233 ~~~~~~~~~d~~e~~~af~-ek-r~~~~~~ 260 (261)
T PRK03580 233 HYPSVLHSEDALEGPRAFA-EK-RDPVWKG 260 (261)
T ss_pred HHHHHhcCccHHHHHHHHh-cC-CCCCCCC
Confidence 6677889999999999999 78 7999975
No 42
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-51 Score=403.20 Aligned_cols=263 Identities=26% Similarity=0.376 Sum_probs=225.5
Q ss_pred CcccceEEEEecC-cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcC
Q 013607 63 GAEEFVKGNVHPN-GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD 141 (439)
Q Consensus 63 ~~~~~i~~~~~~~-~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~ 141 (439)
|.|+.+.+++ ++ +|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.......
T Consensus 2 ~~~~~i~~~~-~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~ 79 (272)
T PRK06210 2 MAYDAVLYEV-ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAG-RGFCAGADMGELQTIDPSD 79 (272)
T ss_pred CCcceEEEEE-CCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCC-CCcccccCHHHHhccCccc
Confidence 4567788885 67 8999999999999999999999999999999999999999999998 7999999999875421100
Q ss_pred CC-CCchHHHH----HHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHH
Q 013607 142 RN-TPLVPKVF----TAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYI 216 (439)
Q Consensus 142 ~~-~~~~~~~~----~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~ 216 (439)
.. ......+. .....++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~ 159 (272)
T PRK06210 80 GRRDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWI 159 (272)
T ss_pred ccccccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhh
Confidence 00 00001111 12234567899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCchHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhh
Q 013607 217 AAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLK 296 (439)
Q Consensus 217 l~r~~G~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 296 (439)
|++++|.. ++++|++||+.++ |+||+++||||+++|++++.+.+.
T Consensus 160 l~~~ig~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------- 204 (272)
T PRK06210 160 LPRLVGHA-NALDLLLSARTFY-AEEALRLGLVNRVVPPDELMERTL--------------------------------- 204 (272)
T ss_pred hHhhhCHH-HHHHHHHcCCccC-HHHHHHcCCcceecCHHHHHHHHH---------------------------------
Confidence 99999998 9999999999999 999999999999999877654222
Q ss_pred cchhHHHhhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHhhhcCCCccccCCHHH
Q 013607 297 LLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKG-APFSLCLTQKYFSKVASAHGKTDNELSKLSG 375 (439)
Q Consensus 297 ~~~~~i~~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~-sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~ 375 (439)
+||+ +|+++ ||.++..+|+++++.. ..++.+
T Consensus 205 -----------------------------------~~a~----~i~~~~~p~a~~~~K~~l~~~~---------~~~l~~ 236 (272)
T PRK06210 205 -----------------------------------AYAE----DLARNVSPASMAVIKRQLYEDA---------FQTLAE 236 (272)
T ss_pred -----------------------------------HHHH----HHHhcCCHHHHHHHHHHHHhcc---------cCCHHH
Confidence 4444 68875 9999999999999875 567999
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 376 VMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 376 ~l~~e~~~~~~~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
+++.|...+...+.++|++||+++|+ +| |+|.|..
T Consensus 237 ~~~~e~~~~~~~~~~~~~~egi~af~-~k-r~p~~~~ 271 (272)
T PRK06210 237 ATARANREMHESLQRPDFIEGVASFL-EK-RPPRFPG 271 (272)
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHh-cc-CCCCCCC
Confidence 99999999999999999999999999 78 7999974
No 43
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-51 Score=399.66 Aligned_cols=255 Identities=24% Similarity=0.317 Sum_probs=219.7
Q ss_pred cccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCC
Q 013607 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (439)
Q Consensus 64 ~~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~ 143 (439)
..+.+.++. +++|++|+||||+++|+||.+|+++|.++++.++.|+++++|||||.|+++||+|+|++++.... .
T Consensus 6 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~----~ 80 (262)
T PRK06144 6 STDELLLEV-RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFS----T 80 (262)
T ss_pred CCCceEEEe-eCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhcc----c
Confidence 456688885 78999999999999999999999999999999999999999999999867999999999875421 1
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccc-cCCCCChhHHHHHhhCCC
Q 013607 144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG-IGLFPDVGFSYIAAKGPG 222 (439)
Q Consensus 144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~-lGl~P~~G~~~~l~r~~G 222 (439)
......+......++..+.++||||||+|||+|+|||++|+++||||||+++++|++||++ +|++|++|++++|++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG 160 (262)
T PRK06144 81 AEDAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLG 160 (262)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhC
Confidence 1112233444556778899999999999999999999999999999999999999999997 999999999999999999
Q ss_pred chHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHH
Q 013607 223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQI 302 (439)
Q Consensus 223 ~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i 302 (439)
.. +++++++||+.++ |+||+++||||+|+|++++.+.+.
T Consensus 161 ~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------- 199 (262)
T PRK06144 161 AA-RVKDMLFTARLLE-AEEALAAGLVNEVVEDAALDARAD--------------------------------------- 199 (262)
T ss_pred HH-HHHHHHHcCCCcC-HHHHHHcCCcCeecCHHHHHHHHH---------------------------------------
Confidence 98 9999999999999 999999999999999877664222
Q ss_pred HhhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHH
Q 013607 303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYR 382 (439)
Q Consensus 303 ~~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~ 382 (439)
+||+ +|++.||.+++.+|+.++... ...+ +.+.+
T Consensus 200 -----------------------------~~a~----~i~~~~~~a~~~~K~~l~~~~---------~~~l----~~~~~ 233 (262)
T PRK06144 200 -----------------------------ALAE----LLAAHAPLTLRATKEALRRLR---------REGL----PDGDD 233 (262)
T ss_pred -----------------------------HHHH----HHHhCCHHHHHHHHHHHHHhh---------hcCH----HHHHH
Confidence 3444 799999999999999998765 2334 34556
Q ss_pred HHHhhCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 383 VALRSSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 383 ~~~~~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
.+...+.++|++||+++|+ +| |+|.|++
T Consensus 234 ~~~~~~~~~~~~e~~~af~-~k-r~p~~~~ 261 (262)
T PRK06144 234 LIRMCYMSEDFREGVEAFL-EK-RPPKWKG 261 (262)
T ss_pred HHHHHhcChHHHHHHHHHh-cC-CCCCCCC
Confidence 7777889999999999999 77 7999975
No 44
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.2e-51 Score=397.61 Aligned_cols=255 Identities=24% Similarity=0.383 Sum_probs=222.6
Q ss_pred cccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCC
Q 013607 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (439)
Q Consensus 64 ~~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~ 143 (439)
.|+.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.... ..
T Consensus 2 ~~~~i~~~~-~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~---~~ 75 (257)
T PRK06495 2 MMSQLKLEV-SDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAG-KVFCAGADLKGRPDVI---KG 75 (257)
T ss_pred CcceEEEEe-eCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCcccCcCHHhHhhcc---CC
Confidence 466788875 7899999999998 5999999999999999999999999999999997 8999999999875421 11
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCc
Q 013607 144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG 223 (439)
Q Consensus 144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~ 223 (439)
......+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++ |+++++++++|.
T Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~ 152 (257)
T PRK06495 76 PGDLRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGH 152 (257)
T ss_pred chhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCH
Confidence 11222334445567888999999999999999999999999999999999999999999999996 456789999999
Q ss_pred hHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHH
Q 013607 224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT 303 (439)
Q Consensus 224 ~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~ 303 (439)
. ++++|+++|+.++ |+||+++||||++||++++.+.+.
T Consensus 153 ~-~a~~lll~g~~~~-a~eA~~~GLv~~vv~~~~~~~~a~---------------------------------------- 190 (257)
T PRK06495 153 S-LTRRMMLTGYRVP-AAELYRRGVIEACLPPEELMPEAM---------------------------------------- 190 (257)
T ss_pred H-HHHHHHHcCCeeC-HHHHHHcCCcceecCHHHHHHHHH----------------------------------------
Confidence 8 9999999999999 999999999999999887764322
Q ss_pred hhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHH
Q 013607 304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV 383 (439)
Q Consensus 304 ~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~ 383 (439)
+|++ +|++.||.+++.+|++++... ..++.++++.|.+.
T Consensus 191 ----------------------------~~a~----~l~~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~ 229 (257)
T PRK06495 191 ----------------------------EIAR----EIASKSPLATRLAKDALNTIE---------NMSLRDGYRYEQDI 229 (257)
T ss_pred ----------------------------HHHH----HHHhCCHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Confidence 3444 799999999999999999876 56899999999999
Q ss_pred HHhhCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 384 ALRSSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 384 ~~~~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
+...+.++|++||+++|+ +| |+|+|+.
T Consensus 230 ~~~~~~s~d~~egi~af~-~k-r~p~~~~ 256 (257)
T PRK06495 230 TAKLAKTEDAKEAQRAFL-EK-RPPVFKG 256 (257)
T ss_pred HHHHhcChHHHHHHHHHh-cc-CCCCCCC
Confidence 999999999999999999 77 7999975
No 45
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=2.1e-51 Score=401.16 Aligned_cols=253 Identities=25% Similarity=0.324 Sum_probs=217.9
Q ss_pred cccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCC
Q 013607 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (439)
Q Consensus 64 ~~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~ 143 (439)
.|++|.++. +++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..... ...
T Consensus 6 ~~~~i~~~~-~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~-~~~ 82 (275)
T PRK09120 6 RWDTVKVEV-EDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAG-DAWSAGMDLKEYFRETD-AQP 82 (275)
T ss_pred ccccEEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCC-CceecCcCHHHHhhccc-cch
Confidence 467788885 789999999999999999999999999999999999999999999998 79999999998753211 000
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCc
Q 013607 144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG 223 (439)
Q Consensus 144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~ 223 (439)
......+....+.++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~ 162 (275)
T PRK09120 83 EILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGH 162 (275)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCH
Confidence 10122233344567788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHH
Q 013607 224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT 303 (439)
Q Consensus 224 ~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~ 303 (439)
. ++++|++||+.++ |+||+++|||++|||++++.+.+.
T Consensus 163 ~-~a~~llltg~~~~-A~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------- 200 (275)
T PRK09120 163 R-DALYYIMTGETFT-GRKAAEMGLVNESVPLAQLRARTR---------------------------------------- 200 (275)
T ss_pred H-HHHHHHhcCCccC-HHHHHHcCCcceecCHHHHHHHHH----------------------------------------
Confidence 8 9999999999999 999999999999999888765332
Q ss_pred hhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHH
Q 013607 304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV 383 (439)
Q Consensus 304 ~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~ 383 (439)
++|+ +|+++||.+++.+|++++... ..++.+.++.|...
T Consensus 201 ----------------------------~~a~----~la~~~p~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~ 239 (275)
T PRK09120 201 ----------------------------ELAA----KLLEKNPVVLRAAKDGFKRVR---------ELTWDQAEDYLYAK 239 (275)
T ss_pred ----------------------------HHHH----HHHhCCHHHHHHHHHHHHHHH---------hCCHHHHHHHHHHH
Confidence 3443 799999999999999999876 56799998887643
Q ss_pred --HHhhCCCC-hHHHHHHHHHh
Q 013607 384 --ALRSSLRS-DFAEGVRAVLV 402 (439)
Q Consensus 384 --~~~~~~~~-d~~egv~a~l~ 402 (439)
....+.++ |++||+++|++
T Consensus 240 ~~~~~~~~~~~d~~eg~~afl~ 261 (275)
T PRK09120 240 LEQANSLDPEGGREEGLKQFLD 261 (275)
T ss_pred HHHHHhhCCHHHHHHHHHHHHh
Confidence 44567888 89999999994
No 46
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.9e-51 Score=401.98 Aligned_cols=264 Identities=22% Similarity=0.297 Sum_probs=221.5
Q ss_pred cccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCC-
Q 013607 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR- 142 (439)
Q Consensus 64 ~~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~- 142 (439)
+++.|.++..+++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++......+.
T Consensus 7 ~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g-~~FcaG~Dl~~~~~~~~~~~~ 85 (276)
T PRK05864 7 TMSLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAG-RGFSSGADHKSAGVVPHVEGL 85 (276)
T ss_pred CCCceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCeecCcchhhhhcccccccc
Confidence 4566888754689999999999999999999999999999999999999999999997 89999999998743110000
Q ss_pred -CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCC-ChhHHHHHhhC
Q 013607 143 -NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFP-DVGFSYIAAKG 220 (439)
Q Consensus 143 -~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P-~~G~~~~l~r~ 220 (439)
.......+...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~ 165 (276)
T PRK05864 86 TRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRA 165 (276)
T ss_pred cchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhh
Confidence 0111112333445677789999999999999999999999999999999999999999999999997 78999999999
Q ss_pred CCchHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchh
Q 013607 221 PGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLP 300 (439)
Q Consensus 221 ~G~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 300 (439)
+|.. ++++|++||++++ |+||+++|||++++|++++.+.+.
T Consensus 166 vG~~-~A~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------- 206 (276)
T PRK05864 166 IGSS-RAFEIMLTGRDVD-AEEAERIGLVSRQVPDEQLLDTCY------------------------------------- 206 (276)
T ss_pred hCHH-HHHHHHHcCCccC-HHHHHHcCCcceeeCHHHHHHHHH-------------------------------------
Confidence 9998 9999999999999 999999999999999887664222
Q ss_pred HHHhhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccC-CHHHHHHH
Q 013607 301 QITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELS-KLSGVMKY 379 (439)
Q Consensus 301 ~i~~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~-~l~~~l~~ 379 (439)
+||+ +|+..||.+++.+|++++... .. ++.+++..
T Consensus 207 -------------------------------~~a~----~la~~~p~a~~~~K~~l~~~~---------~~~~~~~~~~~ 242 (276)
T PRK05864 207 -------------------------------AIAA----RMAGFSRPGIELTKRTLWSGL---------DAASLEAHMQA 242 (276)
T ss_pred -------------------------------HHHH----HHHhCCHHHHHHHHHHHHhhc---------ccCCHHHHHHH
Confidence 4454 789999999999999998764 33 68888888
Q ss_pred HHHHHH-hhCCCChHHHHHHHHHhCCCCCCCCCCC
Q 013607 380 EYRVAL-RSSLRSDFAEGVRAVLVDKDQNPKWNPA 413 (439)
Q Consensus 380 e~~~~~-~~~~~~d~~egv~a~l~~K~r~P~w~~~ 413 (439)
|..... ..+.++|++||+++|+ +| |+|.|++.
T Consensus 243 e~~~~~~~~~~~~d~~e~~~af~-~k-r~p~~~~~ 275 (276)
T PRK05864 243 EGLGQLFVRLLTANFEEAVAARA-EK-RPPVFTDD 275 (276)
T ss_pred HHHHHHHHhccChhHHHHHHHHh-cc-CCCCCCCC
Confidence 875322 3578999999999999 78 79999764
No 47
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.8e-51 Score=404.53 Aligned_cols=264 Identities=23% Similarity=0.332 Sum_probs=220.3
Q ss_pred cccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcC--
Q 013607 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD-- 141 (439)
Q Consensus 64 ~~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~-- 141 (439)
.++.|.++. +++|++|+||||++.|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.......
T Consensus 2 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~ 79 (296)
T PRK08260 2 TYETIRYDV-ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAG-RAFCAGADLSAGGNTFDLDAP 79 (296)
T ss_pred CcceEEEee-eCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CCeecCcChHHhhhccccccc
Confidence 356688875 789999999999999999999999999999999999999999999998 8999999999875311000
Q ss_pred ---------CCCC-chHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCCh
Q 013607 142 ---------RNTP-LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDV 211 (439)
Q Consensus 142 ---------~~~~-~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~ 211 (439)
.... ....+......++..|..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~ 159 (296)
T PRK08260 80 RTPVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEA 159 (296)
T ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCc
Confidence 0001 111222333457778999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhCCCchHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCC
Q 013607 212 GFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEG 291 (439)
Q Consensus 212 G~~~~l~r~~G~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (439)
|++++|++++|.. ++++|++||+.++ |+||+++||||+|||++++.+.+.
T Consensus 160 g~~~~l~r~vG~~-~A~~llltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~---------------------------- 209 (296)
T PRK08260 160 ASSWFLPRLVGLQ-TALEWVYSGRVFD-AQEALDGGLVRSVHPPDELLPAAR---------------------------- 209 (296)
T ss_pred chhhhHHHhhCHH-HHHHHHHcCCccC-HHHHHHCCCceeecCHHHHHHHHH----------------------------
Confidence 9999999999998 9999999999999 999999999999999877654222
Q ss_pred CchhhcchhHHHhhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHhhhcCCCcccc
Q 013607 292 EAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKG-APFSLCLTQKYFSKVASAHGKTDNEL 370 (439)
Q Consensus 292 ~~~~~~~~~~i~~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~-sp~al~~~k~~l~~~~~~~~~~~~~~ 370 (439)
++|+ +|+++ ||.+++.+|++++.... ..
T Consensus 210 ----------------------------------------~~a~----~i~~~~~~~a~~~~K~~l~~~~~-------~~ 238 (296)
T PRK08260 210 ----------------------------------------ALAR----EIADNTSPVSVALTRQMMWRMAG-------AD 238 (296)
T ss_pred ----------------------------------------HHHH----HHHhcCChHHHHHHHHHHHhccc-------CC
Confidence 3444 68875 99999999999987630 01
Q ss_pred CCHHHHHHHHHHHHHhhCCCChHHHHHHHHHhCCCCCCCCCCC
Q 013607 371 SKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA 413 (439)
Q Consensus 371 ~~l~~~l~~e~~~~~~~~~~~d~~egv~a~l~~K~r~P~w~~~ 413 (439)
..+. ....|...+...+.++|++||+++|+ +| |+|.|+++
T Consensus 239 ~~~~-~~~~e~~~~~~~~~~~d~~egi~af~-~k-r~p~f~~~ 278 (296)
T PRK08260 239 HPME-AHRVDSRAIYSRGRSGDGKEGVSSFL-EK-RPAVFPGK 278 (296)
T ss_pred CcHH-HHHHHHHHHHHHccChhHHHHHHHHh-cC-CCCCCCCC
Confidence 2333 34567778888889999999999999 77 79999986
No 48
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=5.3e-51 Score=398.10 Aligned_cols=258 Identities=19% Similarity=0.245 Sum_probs=220.1
Q ss_pred cccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCC
Q 013607 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (439)
Q Consensus 64 ~~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~ 143 (439)
+++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++.... ...
T Consensus 11 ~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~--~~~ 87 (273)
T PRK07396 11 EYEDILYKS-ADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGG--YVD 87 (273)
T ss_pred CCcceEEEe-cCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhccc--ccc
Confidence 356688874 78999999999999999999999999999999999999999999999856999999999864210 000
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCc
Q 013607 144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG 223 (439)
Q Consensus 144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~ 223 (439)
......+ ....++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.
T Consensus 88 ~~~~~~~--~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~ 165 (273)
T PRK07396 88 DDGVPRL--NVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQ 165 (273)
T ss_pred hhhhhhh--HHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhH
Confidence 1111111 12346678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHH
Q 013607 224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT 303 (439)
Q Consensus 224 ~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~ 303 (439)
. ++++|++||+.++ |+||+++||||+|||++++.+.+.
T Consensus 166 ~-~a~~l~ltg~~~~-A~eA~~~GLv~~vv~~~~l~~~a~---------------------------------------- 203 (273)
T PRK07396 166 K-KAREIWFLCRQYD-AQEALDMGLVNTVVPLADLEKETV---------------------------------------- 203 (273)
T ss_pred H-HHHHHHHhCCCcC-HHHHHHcCCcCeecCHHHHHHHHH----------------------------------------
Confidence 8 9999999999999 999999999999999877664322
Q ss_pred hhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHH
Q 013607 304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV 383 (439)
Q Consensus 304 ~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~ 383 (439)
+||+ +|+++||.+++.+|++++... . .++...+.|.+.
T Consensus 204 ----------------------------~~a~----~la~~~~~a~~~~K~~l~~~~---------~-~~~~~~~~e~~~ 241 (273)
T PRK07396 204 ----------------------------RWCR----EMLQNSPMALRCLKAALNADC---------D-GQAGLQELAGNA 241 (273)
T ss_pred ----------------------------HHHH----HHHhCCHHHHHHHHHHHHhhh---------c-cHHHHHHHHHHH
Confidence 3444 799999999999999998764 2 355556678888
Q ss_pred HHhhCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 384 ALRSSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 384 ~~~~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
+...+.++|++||+.+|+ +| |+|+|+.
T Consensus 242 ~~~~~~~~d~~egi~af~-~k-r~p~~~~ 268 (273)
T PRK07396 242 TMLFYMTEEAQEGRNAFN-EK-RQPDFSK 268 (273)
T ss_pred HHHHhcChhHHHHHHHHh-CC-CCCCCCC
Confidence 888899999999999999 77 7999975
No 49
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.7e-51 Score=395.85 Aligned_cols=254 Identities=26% Similarity=0.394 Sum_probs=226.6
Q ss_pred cceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCC
Q 013607 66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP 145 (439)
Q Consensus 66 ~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 145 (439)
+.+.++. +++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.... ...
T Consensus 5 ~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~----~~~ 78 (259)
T PRK06688 5 TDLLVEL-EDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAG-RAFSAGGDIKDFPKAP----PKP 78 (259)
T ss_pred CceEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCccCccCHHHHhccC----cch
Confidence 4477775 789999999999999999999999999999999999999999999998 8999999999876421 111
Q ss_pred chHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchH
Q 013607 146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS 225 (439)
Q Consensus 146 ~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~ 225 (439)
..+....+.++..+.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+++++++++|..
T Consensus 79 --~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~- 155 (259)
T PRK06688 79 --PDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRA- 155 (259)
T ss_pred --HHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHH-
Confidence 23455566788899999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHhh
Q 013607 226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSC 305 (439)
Q Consensus 226 ~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~ 305 (439)
+++++++||+.++ |+||+++||||+++|++++.+.+.
T Consensus 156 ~a~~l~l~g~~~~-a~eA~~~Glv~~v~~~~~l~~~a~------------------------------------------ 192 (259)
T PRK06688 156 RAAEMLLLGEPLS-AEEALRIGLVNRVVPAAELDAEAD------------------------------------------ 192 (259)
T ss_pred HHHHHHHhCCccC-HHHHHHcCCcceecCHHHHHHHHH------------------------------------------
Confidence 9999999999999 999999999999999877654222
Q ss_pred cCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHHH
Q 013607 306 FSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVAL 385 (439)
Q Consensus 306 F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~ 385 (439)
++|+ +|++.||.+++.+|+++++.. ..++++++..|.+.+.
T Consensus 193 --------------------------~~a~----~i~~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~ 233 (259)
T PRK06688 193 --------------------------AQAA----KLAAGPASALRYTKRAINAAT---------LTELEEALAREAAGFG 233 (259)
T ss_pred --------------------------HHHH----HHHhCCHHHHHHHHHHHHhhh---------hCCHHHHHHHHHHHHH
Confidence 3444 688999999999999999876 5679999999999999
Q ss_pred hhCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 386 RSSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 386 ~~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
.++.++|+++|+++|+ +| ++|+|+.
T Consensus 234 ~~~~~~~~~~~~~af~-~~-~~p~~~~ 258 (259)
T PRK06688 234 RLLRTPDFREGATAFI-EK-RKPDFTG 258 (259)
T ss_pred HHhCCHHHHHHHHHHH-cC-CCCCCCC
Confidence 9999999999999999 67 7999974
No 50
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=8.7e-51 Score=394.83 Aligned_cols=259 Identities=20% Similarity=0.283 Sum_probs=222.6
Q ss_pred cccCcccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhh
Q 013607 60 AAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQ 139 (439)
Q Consensus 60 ~~~~~~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~ 139 (439)
+.+.+.+.|.++..+++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....
T Consensus 3 ~~~~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~- 80 (265)
T PLN02888 3 TQTVSENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSG-RAFCSGVDLTAAEEVF- 80 (265)
T ss_pred cccCCCCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CcccCCCCHHHHHhhc-
Confidence 33455677888754689999999999999999999999999999999999999999999998 7999999999865311
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhh
Q 013607 140 KDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAK 219 (439)
Q Consensus 140 ~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r 219 (439)
. .. .. .....++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++
T Consensus 81 -~--~~-~~---~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~ 153 (265)
T PLN02888 81 -K--GD-VK---DVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSR 153 (265)
T ss_pred -c--ch-hh---HHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHH
Confidence 0 11 11 11234566789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcch
Q 013607 220 GPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLL 299 (439)
Q Consensus 220 ~~G~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 299 (439)
++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.
T Consensus 154 ~vG~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------ 195 (265)
T PLN02888 154 IIGAN-RAREVSLTAMPLT-AETAERWGLVNHVVEESELLKKAR------------------------------------ 195 (265)
T ss_pred HhCHH-HHHHHHHhCCccC-HHHHHHcCCccEeeChHHHHHHHH------------------------------------
Confidence 99998 9999999999999 999999999999999877654222
Q ss_pred hHHHhhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHH
Q 013607 300 PQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKY 379 (439)
Q Consensus 300 ~~i~~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~ 379 (439)
++|+ +|++.+|.+++.+|++++... ..++++++..
T Consensus 196 --------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~ 230 (265)
T PLN02888 196 --------------------------------EVAE----AIIKNNQGMVLRYKSVINDGL---------KLDLGHALQL 230 (265)
T ss_pred --------------------------------HHHH----HHHhCCHHHHHHHHHHHHHhh---------cCCHHHHHHH
Confidence 3443 799999999999999999876 5678999999
Q ss_pred HHHHHHhhC--CCChHHHHHHHHHhCCCCCCCCCC
Q 013607 380 EYRVALRSS--LRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 380 e~~~~~~~~--~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
|.+.+..++ .++|++||+++|+ +| |+|+-.+
T Consensus 231 e~~~~~~~~~~~~~d~~e~~~af~-ek-r~~~~~~ 263 (265)
T PLN02888 231 EKERAHDYYNGMTKEQFQKMQEFI-AG-RSSKKPS 263 (265)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHH-hc-CCCCCCC
Confidence 988777764 5999999999999 67 6776443
No 51
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-50 Score=393.22 Aligned_cols=256 Identities=22% Similarity=0.305 Sum_probs=220.9
Q ss_pred ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCC
Q 013607 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (439)
Q Consensus 65 ~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 144 (439)
++.+.++. +++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.... ....
T Consensus 2 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~--~~~~ 77 (262)
T PRK07509 2 MDRVSVTI-EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEG-GAFCAGLDVKSVASSP--GNAV 77 (262)
T ss_pred CceEEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCC-CCcCCCcCHHHHhccc--chhh
Confidence 45688885 799999999999999999999999999999999999999999999998 7999999999875421 0000
Q ss_pred CchH----HHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhC
Q 013607 145 PLVP----KVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG 220 (439)
Q Consensus 145 ~~~~----~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~ 220 (439)
.... ........++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ 157 (262)
T PRK07509 78 KLLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGL 157 (262)
T ss_pred hhHhhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHH
Confidence 1111 111223345667889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchh
Q 013607 221 PGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLP 300 (439)
Q Consensus 221 ~G~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 300 (439)
+|.. ++++|++||+.++ |+||+++||||++++. +.+.+
T Consensus 158 ~g~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~--~~~~a-------------------------------------- 195 (262)
T PRK07509 158 VRKD-VARELTYTARVFS-AEEALELGLVTHVSDD--PLAAA-------------------------------------- 195 (262)
T ss_pred hCHH-HHHHHHHcCCCcC-HHHHHHcCChhhhhch--HHHHH--------------------------------------
Confidence 9998 9999999999999 9999999999999953 32211
Q ss_pred HHHhhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHH
Q 013607 301 QITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYE 380 (439)
Q Consensus 301 ~i~~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e 380 (439)
.+||+ +|+++||.+++.+|++++... ..++.+++..|
T Consensus 196 ------------------------------~~~a~----~l~~~~~~~~~~~K~~l~~~~---------~~~~~~~~~~e 232 (262)
T PRK07509 196 ------------------------------LALAR----EIAQRSPDAIAAAKRLINRSW---------TASVRALLARE 232 (262)
T ss_pred ------------------------------HHHHH----HHHhCCHHHHHHHHHHHHHHh---------cCCHHHHHHHH
Confidence 24444 789999999999999999876 56799999999
Q ss_pred HHHHHhhCCCChHHHHHHHHHhCCCCCCCCC
Q 013607 381 YRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 411 (439)
Q Consensus 381 ~~~~~~~~~~~d~~egv~a~l~~K~r~P~w~ 411 (439)
.+.+...+.++|++||+++|+ +| |+|.|+
T Consensus 233 ~~~~~~~~~~~d~~e~~~af~-ek-r~p~~~ 261 (262)
T PRK07509 233 SVEQIRLLLGKNQKIAVKAQM-KK-RAPKFL 261 (262)
T ss_pred HHHHHHHhcChhHHHHHHHHh-cC-CCCCCC
Confidence 999999999999999999999 77 799996
No 52
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-50 Score=391.68 Aligned_cols=252 Identities=24% Similarity=0.342 Sum_probs=221.1
Q ss_pred cceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCC
Q 013607 66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP 145 (439)
Q Consensus 66 ~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 145 (439)
+++.++. +++|++|+||||++.|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++..... .....
T Consensus 2 ~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~-~~~~~ 78 (255)
T PRK07260 2 EHIIYEV-EDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANG-KVFSVGGDLVEMKRAVD-EDDVQ 78 (255)
T ss_pred CceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccccCHHHHHhhcc-ccchh
Confidence 4577775 789999999999999999999999999999999999999999999998 89999999998764221 11111
Q ss_pred chHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchH
Q 013607 146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS 225 (439)
Q Consensus 146 ~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~ 225 (439)
....+....+.++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~- 157 (255)
T PRK07260 79 SLVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLN- 157 (255)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHH-
Confidence 1122334456678899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHhh
Q 013607 226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSC 305 (439)
Q Consensus 226 ~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~ 305 (439)
++++|++||++++ |+||+++||||+++|++++.+.+.
T Consensus 158 ~a~~l~l~g~~~s-a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------ 194 (255)
T PRK07260 158 RATHLAMTGEALT-AEKALEYGFVYRVAESEKLEKTCE------------------------------------------ 194 (255)
T ss_pred HHHHHHHhCCccC-HHHHHHcCCcceecCHhHHHHHHH------------------------------------------
Confidence 9999999999999 999999999999999877654322
Q ss_pred cCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHHH
Q 013607 306 FSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVAL 385 (439)
Q Consensus 306 F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~ 385 (439)
++|+ +|++.||.+++.+|+.++... ..++++.+..|...+.
T Consensus 195 --------------------------~~a~----~la~~~~~a~~~~K~~~~~~~---------~~~~~~~~~~e~~~~~ 235 (255)
T PRK07260 195 --------------------------QLLK----KLRRGSSNSYAAIKSLVWESF---------FKGWEDYAKLELALQE 235 (255)
T ss_pred --------------------------HHHH----HHHcCCHHHHHHHHHHHHHHh---------hcCHHHHHHHHHHHHH
Confidence 3333 799999999999999999876 5679999999999999
Q ss_pred hhCCCChHHHHHHHHHhCC
Q 013607 386 RSSLRSDFAEGVRAVLVDK 404 (439)
Q Consensus 386 ~~~~~~d~~egv~a~l~~K 404 (439)
..+.++|++||+++|+ +|
T Consensus 236 ~~~~~~~~~e~~~af~-~k 253 (255)
T PRK07260 236 SLAFKEDFKEGVRAFS-ER 253 (255)
T ss_pred HHhcCHHHHHHHHHHH-hc
Confidence 9999999999999999 56
No 53
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=2.3e-50 Score=390.55 Aligned_cols=253 Identities=30% Similarity=0.458 Sum_probs=221.9
Q ss_pred ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCC
Q 013607 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (439)
Q Consensus 65 ~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 144 (439)
+..+.++. .++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.. . ...
T Consensus 4 ~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g-~~FsaG~Dl~~~~~-~---~~~ 77 (257)
T COG1024 4 YETILVER-EDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAG-KAFSAGADLKELLS-P---EDG 77 (257)
T ss_pred CCeeEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CceecccCHHHHhc-c---cch
Confidence 45677775 566999999999999999999999999999999999999999999998 99999999999874 0 011
Q ss_pred CchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCch
Q 013607 145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG 224 (439)
Q Consensus 145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~ 224 (439)
.....++...+.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~ 157 (257)
T COG1024 78 NAAENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRG 157 (257)
T ss_pred hHHHHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHH
Confidence 11124666677899999999999999999999999999999999999999999999999999999889999999999998
Q ss_pred HHHHHHhhcCCCCCcHHHHHHcCCcccccCC-CCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHH
Q 013607 225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPS-GNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT 303 (439)
Q Consensus 225 ~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~-~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~ 303 (439)
++++|++||+.++ |+||+++|||+++++. +++.+.+.
T Consensus 158 -~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~~l~~~a~---------------------------------------- 195 (257)
T COG1024 158 -RAKELLLTGEPIS-AAEALELGLVDEVVPDAEELLERAL---------------------------------------- 195 (257)
T ss_pred -HHHHHHHcCCcCC-HHHHHHcCCcCeeeCCHHHHHHHHH----------------------------------------
Confidence 9999999999999 9999999999999985 46654332
Q ss_pred hhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHH
Q 013607 304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV 383 (439)
Q Consensus 304 ~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~ 383 (439)
++++ +++. ||.++..+|+.++... ...+++.+..|...
T Consensus 196 ----------------------------~~a~----~~a~-~~~a~~~~k~~~~~~~---------~~~l~~~~~~~~~~ 233 (257)
T COG1024 196 ----------------------------ELAR----RLAA-PPLALAATKRLVRAAL---------EADLAEALEAEALA 233 (257)
T ss_pred ----------------------------HHHH----HHcc-CHHHHHHHHHHHHHhh---------hccHHHHHHHHHHH
Confidence 3343 4555 9999999999999886 34499999999999
Q ss_pred HHhhCCCChHHHHHHHHHhCCCCCCCC
Q 013607 384 ALRSSLRSDFAEGVRAVLVDKDQNPKW 410 (439)
Q Consensus 384 ~~~~~~~~d~~egv~a~l~~K~r~P~w 410 (439)
+...+.++|++||+++|+ + |+|.|
T Consensus 234 ~~~~~~~~d~~eg~~a~~-~--r~p~~ 257 (257)
T COG1024 234 FARLFSSEDFREGVRAFL-E--RKPVF 257 (257)
T ss_pred HHHHhcChhHHHHHHHHH-c--cCCCC
Confidence 998888999999999999 4 79988
No 54
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.1e-50 Score=385.45 Aligned_cols=247 Identities=27% Similarity=0.418 Sum_probs=216.6
Q ss_pred eEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCch
Q 013607 68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV 147 (439)
Q Consensus 68 i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 147 (439)
|.++. +++|++||||||++.|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.... .
T Consensus 2 i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~--------~ 71 (248)
T PRK06072 2 IKVES-REGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEG-RAFCVGADLSEFAPDF--------A 71 (248)
T ss_pred eEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCcccCcCHHHHhhhh--------H
Confidence 45664 789999999999999999999999999999999999999999999998 7999999999875311 1
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHHH
Q 013607 148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG 227 (439)
Q Consensus 148 ~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~a 227 (439)
..+...++.++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+++++++++| . ++
T Consensus 72 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g-~-~a 149 (248)
T PRK06072 72 IDLRETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTG-Q-RF 149 (248)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhh-H-HH
Confidence 223344556778899999999999999999999999999999999999999999999999999999999999999 4 79
Q ss_pred HHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHhhcC
Q 013607 228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFS 307 (439)
Q Consensus 228 ~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~ 307 (439)
+++++||+.++ |+||+++||||++ +++.+ ++
T Consensus 150 ~~lll~g~~~~-a~eA~~~Glv~~~---~~~~~--~a------------------------------------------- 180 (248)
T PRK06072 150 YEILVLGGEFT-AEEAERWGLLKIS---EDPLS--DA------------------------------------------- 180 (248)
T ss_pred HHHHHhCCccC-HHHHHHCCCcccc---chHHH--HH-------------------------------------------
Confidence 99999999999 9999999999953 23332 11
Q ss_pred CCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHHHhh
Q 013607 308 SEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRS 387 (439)
Q Consensus 308 ~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~ 387 (439)
.++|+ +|++.||.+++.+|+++++.. ..++++.++.|.+.+..+
T Consensus 181 -----------------------~~~a~----~la~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~~~~~ 224 (248)
T PRK06072 181 -----------------------EEMAN----RISNGPFQSYIAAKRMINLVL---------YNDLEEFLEYESAIQGYL 224 (248)
T ss_pred -----------------------HHHHH----HHHhCCHHHHHHHHHHHHHHh---------hcCHHHHHHHHHHHHHHH
Confidence 24444 789999999999999999876 467999999999999999
Q ss_pred CCCChHHHHHHHHHhCCCCCCCCCCC
Q 013607 388 SLRSDFAEGVRAVLVDKDQNPKWNPA 413 (439)
Q Consensus 388 ~~~~d~~egv~a~l~~K~r~P~w~~~ 413 (439)
+.++|++||+++|+ +| |+|.|+++
T Consensus 225 ~~~~d~~eg~~af~-~k-r~p~~~~~ 248 (248)
T PRK06072 225 GKTEDFKEGISSFK-EK-REPKFKGI 248 (248)
T ss_pred hCChhHHHHHHHHh-cC-CCCCCCCC
Confidence 99999999999999 77 79999853
No 55
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.2e-50 Score=389.82 Aligned_cols=249 Identities=18% Similarity=0.188 Sum_probs=212.9
Q ss_pred ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCc
Q 013607 67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (439)
Q Consensus 67 ~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 146 (439)
.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.... . ..
T Consensus 4 ~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g-~~FcaG~Dl~~~~~~~---~-~~- 76 (254)
T PRK08259 4 SVRVER-NGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAG-GTFCAGADLKAVGTGR---G-NR- 76 (254)
T ss_pred eEEEEE-ECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCccCCcChHHHhccc---c-hh-
Confidence 377774 789999999999999999999999999999999999999999999997 8999999999875421 0 00
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHH
Q 013607 147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV 226 (439)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~ 226 (439)
.... ....+...+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 77 ~~~~--~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~-~ 153 (254)
T PRK08259 77 LHPS--GDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHS-R 153 (254)
T ss_pred hhhh--hcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHH-H
Confidence 1100 001112233479999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHhhc
Q 013607 227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCF 306 (439)
Q Consensus 227 a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F 306 (439)
+++|+++|+.++ |+||+++||||+|||++++.+.+.
T Consensus 154 a~~lll~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------- 189 (254)
T PRK08259 154 AMDLILTGRPVD-ADEALAIGLANRVVPKGQARAAAE------------------------------------------- 189 (254)
T ss_pred HHHHHHcCCccC-HHHHHHcCCCCEeeChhHHHHHHH-------------------------------------------
Confidence 999999999999 999999999999999888764322
Q ss_pred CCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHHHh
Q 013607 307 SSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALR 386 (439)
Q Consensus 307 ~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~ 386 (439)
+||+ +|++.||.+++.+|+++++.. ..++.++++.|...+..
T Consensus 190 -------------------------~~a~----~la~~~~~a~~~~K~~~~~~~---------~~~~~~~~~~e~~~~~~ 231 (254)
T PRK08259 190 -------------------------ELAA----ELAAFPQTCLRADRLSALEQW---------GLPEEAALANEFAHGLA 231 (254)
T ss_pred -------------------------HHHH----HHHhCCHHHHHHHHHHHHHhh---------cCCHHHHHHHHHHHHHH
Confidence 3443 799999999999999999865 56799999999988777
Q ss_pred hCCCChHHHHHHHHHhCCCCCCC
Q 013607 387 SSLRSDFAEGVRAVLVDKDQNPK 409 (439)
Q Consensus 387 ~~~~~d~~egv~a~l~~K~r~P~ 409 (439)
.+. +|++||+++|+ +|+++|.
T Consensus 232 ~~~-~d~~egi~af~-~~~~~~~ 252 (254)
T PRK08259 232 VLA-AEALEGAARFA-AGAGRHG 252 (254)
T ss_pred HHh-hHHHHHHHHHH-hhhcccC
Confidence 776 99999999999 5556663
No 56
>PLN02921 naphthoate synthase
Probab=100.00 E-value=4.6e-50 Score=398.97 Aligned_cols=259 Identities=19% Similarity=0.224 Sum_probs=218.6
Q ss_pred cccceEEEEe-cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCC
Q 013607 64 AEEFVKGNVH-PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR 142 (439)
Q Consensus 64 ~~~~i~~~~~-~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~ 142 (439)
.++.|.++.. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++.... ..
T Consensus 63 ~~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~--~~ 140 (327)
T PLN02921 63 EFTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDG--YV 140 (327)
T ss_pred CCceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhccc--cc
Confidence 4677888853 58999999999999999999999999999999999999999999999867999999999764310 00
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCC
Q 013607 143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG 222 (439)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G 222 (439)
.......+ ....++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus 141 ~~~~~~~~--~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG 218 (327)
T PLN02921 141 GPDDAGRL--NVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVG 218 (327)
T ss_pred chhHHHHH--HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhC
Confidence 01111111 1234667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHH
Q 013607 223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQI 302 (439)
Q Consensus 223 ~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i 302 (439)
.. ++++|+++|+.++ |+||+++||||+|||.+++.+.+.
T Consensus 219 ~~-~A~ellltG~~~~-A~eA~~~GLV~~vv~~~~l~~~a~--------------------------------------- 257 (327)
T PLN02921 219 QK-KAREMWFLARFYT-ASEALKMGLVNTVVPLDELEGETV--------------------------------------- 257 (327)
T ss_pred HH-HHHHHHHcCCcCC-HHHHHHCCCceEEeCHHHHHHHHH---------------------------------------
Confidence 98 9999999999999 999999999999999887764322
Q ss_pred HhhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHH
Q 013607 303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYR 382 (439)
Q Consensus 303 ~~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~ 382 (439)
+||+ +|+++||.+++.+|++++... . ........|..
T Consensus 258 -----------------------------~~a~----~la~~~p~al~~~K~~l~~~~---------~-~~~~~~~~~~~ 294 (327)
T PLN02921 258 -----------------------------KWCR----EILRNSPTAIRVLKSALNAAD---------D-GHAGLQELGGN 294 (327)
T ss_pred -----------------------------HHHH----HHHccCHHHHHHHHHHHHHhh---------c-chhHHHHHHHH
Confidence 4444 799999999999999998765 2 23333344457
Q ss_pred HHHhhCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 383 VALRSSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 383 ~~~~~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
.+..++.++|++||+++|+ +| |+|.|+.
T Consensus 295 ~~~~~~~s~d~~egi~Af~-ek-r~p~f~~ 322 (327)
T PLN02921 295 ATLLFYGSEEGNEGRTAYL-EG-RAPDFSK 322 (327)
T ss_pred HHHHHhcCHHHHHHHHHHh-cc-CCCCCCC
Confidence 7777889999999999999 77 7999975
No 57
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=6.7e-50 Score=385.66 Aligned_cols=246 Identities=19% Similarity=0.265 Sum_probs=212.2
Q ss_pred eEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCch
Q 013607 68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV 147 (439)
Q Consensus 68 i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 147 (439)
|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.. ...
T Consensus 3 v~~~~-~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g-~~FcaG~Dl~~~~~--------~~~ 71 (251)
T TIGR03189 3 VWLER-DGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEG-PHFSFGASVAEHMP--------DQC 71 (251)
T ss_pred EEEEe-eCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCC-CceecCcChhhhCc--------hhH
Confidence 55664 6889999999997 5999999999999999999999999999999998 79999999997532 011
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHHH
Q 013607 148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG 227 (439)
Q Consensus 148 ~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~a 227 (439)
..+......++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+ |++++|++++|.. ++
T Consensus 72 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~-~~~~~l~~~vg~~-~a 149 (251)
T TIGR03189 72 AAMLASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAP-AASCLLPERMGRV-AA 149 (251)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCC-chHHHHHHHhCHH-HH
Confidence 223444556788899999999999999999999999999999999999999999999999987 4678999999998 99
Q ss_pred HHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHhhcC
Q 013607 228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFS 307 (439)
Q Consensus 228 ~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~ 307 (439)
++|++||+.++ |+||+++|||++++|+.+ + .++
T Consensus 150 ~~l~ltg~~~~-a~eA~~~Glv~~v~~~~~--~--~a~------------------------------------------ 182 (251)
T TIGR03189 150 EDLLYSGRSID-GAEGARIGLANAVAEDPE--N--AAL------------------------------------------ 182 (251)
T ss_pred HHHHHcCCCCC-HHHHHHCCCcceecCcHH--H--HHH------------------------------------------
Confidence 99999999999 999999999999997532 1 111
Q ss_pred CCCCHHHHHHHHHhcccccchhHHHH-HHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHH-HHHHHHHH
Q 013607 308 SEKSVRQIIEELKKHQSSAETSVAQW-ADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVM-KYEYRVAL 385 (439)
Q Consensus 308 ~~~sv~ei~~~l~~~~~~~~~~~~~~-A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l-~~e~~~~~ 385 (439)
++ ++ +|+++||.+++.+|++++... ..++++.+ ..|.....
T Consensus 183 ------------------------~~~a~----~la~~~p~a~~~~K~~l~~~~---------~~~~~~~~~~~e~~~~~ 225 (251)
T TIGR03189 183 ------------------------AWFDE----HPAKLSASSLRFAVRAARLGM---------NERVKAKIAEVEALYLE 225 (251)
T ss_pred ------------------------HHHHH----HHHhCCHHHHHHHHHHHHhhh---------cccHHHHHHHHHHHHHH
Confidence 22 23 789999999999999999775 46787776 47878888
Q ss_pred hhCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 386 RSSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 386 ~~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
.++.++|++||+++|+ +| |+|.|++
T Consensus 226 ~~~~s~d~~eg~~af~-ek-r~p~~~~ 250 (251)
T TIGR03189 226 ELMATHDAVEGLNAFL-EK-RPALWED 250 (251)
T ss_pred HHhCCHhHHHHHHHHH-hc-CCCCCCC
Confidence 8999999999999999 78 7999975
No 58
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.9e-50 Score=385.87 Aligned_cols=244 Identities=22% Similarity=0.322 Sum_probs=216.1
Q ss_pred cceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCC
Q 013607 66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP 145 (439)
Q Consensus 66 ~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 145 (439)
+.+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.... ..
T Consensus 3 ~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~-----~~ 75 (249)
T PRK05870 3 DPVLLDV-DDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAG-KAFCAGADLTALGAAP-----GR 75 (249)
T ss_pred ccEEEEc-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCeecCcChHHHhccc-----cc
Confidence 3467774 789999999999999999999999999999999999999999999998 8999999999876421 11
Q ss_pred chHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchH
Q 013607 146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS 225 (439)
Q Consensus 146 ~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~ 225 (439)
.....+...+.++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..
T Consensus 76 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~- 154 (249)
T PRK05870 76 PAEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQ- 154 (249)
T ss_pred chHHHHHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHH-
Confidence 1123445556677789999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHhh
Q 013607 226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSC 305 (439)
Q Consensus 226 ~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~ 305 (439)
+++++++||+.++ |+||+++||||+++ +++.+.+.
T Consensus 155 ~a~~l~ltg~~~~-a~eA~~~Glv~~vv--~~l~~~a~------------------------------------------ 189 (249)
T PRK05870 155 VARAALLFGMRFD-AEAAVRHGLALMVA--DDPVAAAL------------------------------------------ 189 (249)
T ss_pred HHHHHHHhCCccC-HHHHHHcCCHHHHH--hhHHHHHH------------------------------------------
Confidence 9999999999999 99999999999999 45543222
Q ss_pred cCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCcccc-CCHHHHHHHHHHHH
Q 013607 306 FSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNEL-SKLSGVMKYEYRVA 384 (439)
Q Consensus 306 F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~-~~l~~~l~~e~~~~ 384 (439)
+||+ +|++.||.+++.+|++++... . .+++++++.|.+.+
T Consensus 190 --------------------------~~a~----~la~~~~~a~~~~K~~~~~~~---------~~~~l~~~~~~e~~~~ 230 (249)
T PRK05870 190 --------------------------ELAA----GPAAAPRELVLATKASMRATA---------SLAQHAAAVEFELGPQ 230 (249)
T ss_pred --------------------------HHHH----HHHhCCHHHHHHHHHHHHhcc---------ccCCHHHHHHHHHHHH
Confidence 3444 799999999999999999865 4 67999999999999
Q ss_pred HhhCCCChHHHHHHHHH
Q 013607 385 LRSSLRSDFAEGVRAVL 401 (439)
Q Consensus 385 ~~~~~~~d~~egv~a~l 401 (439)
...+.++|++||+++|+
T Consensus 231 ~~~~~~~d~~eg~~af~ 247 (249)
T PRK05870 231 AASVQSPEFAARLAAAQ 247 (249)
T ss_pred HHHhcChhHHHHHHHHh
Confidence 99999999999999999
No 59
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.8e-50 Score=394.91 Aligned_cols=263 Identities=19% Similarity=0.175 Sum_probs=216.6
Q ss_pred cccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhH-h---hh
Q 013607 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA-E---IQ 139 (439)
Q Consensus 64 ~~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~-~---~~ 139 (439)
.++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+||++... . ..
T Consensus 3 ~~~~v~~~~-~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G-~~FcaG~Dl~~~~~~~~~~~~ 80 (298)
T PRK12478 3 DFQTLLYTT-AGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAG-RAFSGGYDFGGGFQHWGEAMM 80 (298)
T ss_pred CceEEEEec-cCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccCcCccccccccchhcc
Confidence 456688874 799999999999999999999999999999999999999999999998 89999999986221 0 00
Q ss_pred cCCCCCchHHH---HHH---HHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEecccccc-CCCCChh
Q 013607 140 KDRNTPLVPKV---FTA---EYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGI-GLFPDVG 212 (439)
Q Consensus 140 ~~~~~~~~~~~---~~~---~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~l-Gl~P~~G 212 (439)
..........+ ... ....+..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++ |+++ |
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~--~ 158 (298)
T PRK12478 81 TDGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL--T 158 (298)
T ss_pred cccccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--h
Confidence 00000111111 011 1235567889999999999999999999999999999999999999999997 8875 3
Q ss_pred HHHHHhhCCCchHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCC
Q 013607 213 FSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGE 292 (439)
Q Consensus 213 ~~~~l~r~~G~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (439)
+++ .+.+|.. ++++|++||+.|+ |+||+++||||+|||++++++.+.
T Consensus 159 ~~~--~~~vG~~-~A~~llltg~~i~-A~eA~~~GLV~~vv~~~~l~~~a~----------------------------- 205 (298)
T PRK12478 159 GMW--LYRLSLA-KVKWHSLTGRPLT-GVQAAEAELINEAVPFERLEARVA----------------------------- 205 (298)
T ss_pred hHH--HHHhhHH-HHHHHHHcCCccC-HHHHHHcCCcceecCHHHHHHHHH-----------------------------
Confidence 333 2458998 9999999999999 999999999999999888775332
Q ss_pred chhhcchhHHHhhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCC
Q 013607 293 APLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSK 372 (439)
Q Consensus 293 ~~~~~~~~~i~~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~ 372 (439)
+||+ +|+.+||.+++.+|++++... ...+
T Consensus 206 ---------------------------------------~~a~----~la~~~p~a~~~~K~~l~~~~--------~~~~ 234 (298)
T PRK12478 206 ---------------------------------------EVAT----ELARIPLSQLQAQKLIVNQAY--------ENMG 234 (298)
T ss_pred ---------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHHH--------Hhcc
Confidence 4444 789999999999999999875 1246
Q ss_pred HHHHHHHHHHHHHhhCCCChHH--------HHHHHHHhCCCCCCCCCCCCcC
Q 013607 373 LSGVMKYEYRVALRSSLRSDFA--------EGVRAVLVDKDQNPKWNPASLE 416 (439)
Q Consensus 373 l~~~l~~e~~~~~~~~~~~d~~--------egv~a~l~~K~r~P~w~~~~~~ 416 (439)
+.++++.|...+..++.++|++ ||++||+ +| |+|+|+.-+-.
T Consensus 235 l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~-ek-R~p~f~~~~~~ 284 (298)
T PRK12478 235 LASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAV-ER-RDGPFGDYSQA 284 (298)
T ss_pred hhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHH-Hh-cCCcccccCcC
Confidence 9999999999999999999997 5999999 78 79999876653
No 60
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.2e-50 Score=384.72 Aligned_cols=245 Identities=18% Similarity=0.253 Sum_probs=211.6
Q ss_pred EEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHH
Q 013607 70 GNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPK 149 (439)
Q Consensus 70 ~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 149 (439)
+..++++|++||||||++ |+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++... . .......
T Consensus 5 ~~~~~~~v~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G-~~F~aG~Dl~~~~~~---~-~~~~~~~ 78 (249)
T PRK07938 5 STTPEPGIAEVTVDYPPV-NALPSAGWFALADAITAAGADPDTRVVVLRAEG-RGFNAGVDIKELQAT---P-GFTALID 78 (249)
T ss_pred ecccCCCEEEEEECCCCc-ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCC-CceecCcCHHHHhhc---c-chhHHHH
Confidence 333578999999999985 999999999999999999999999999999998 899999999986531 1 1111112
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHHHHH
Q 013607 150 VFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAY 229 (439)
Q Consensus 150 ~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~a~~ 229 (439)
+......++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++ |++++|++++|.. ++++
T Consensus 79 ~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~-~a~~ 154 (249)
T PRK07938 79 ANRGCFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQH-LMRA 154 (249)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHH-HHHH
Confidence 23334567778999999999999999999999999999999999999999999999986 5667899999998 9999
Q ss_pred HhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHhhcCCC
Q 013607 230 LGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSE 309 (439)
Q Consensus 230 l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~ 309 (439)
|++||+.++ |+||+++|||+++||++++.+.+.
T Consensus 155 l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------- 187 (249)
T PRK07938 155 LFFTAATIT-AAELHHFGSVEEVVPRDQLDEAAL---------------------------------------------- 187 (249)
T ss_pred HHHhCCcCC-HHHHHHCCCccEEeCHHHHHHHHH----------------------------------------------
Confidence 999999999 999999999999999877764322
Q ss_pred CCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHHHhhCC
Q 013607 310 KSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSL 389 (439)
Q Consensus 310 ~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~ 389 (439)
+||+ +|+.+||.+++.+|++++... ..++++.++.|.+.....+.
T Consensus 188 ----------------------~~a~----~la~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~~~~~~~ 232 (249)
T PRK07938 188 ----------------------EVAR----KIAAKDTRVIRAAKEALNGID---------PQDVERSYRWEQGFTFELNL 232 (249)
T ss_pred ----------------------HHHH----HHHhCCHHHHHHHHHHHHhhc---------cCCHHHHHHHHHHHHHHHhc
Confidence 3444 789999999999999999765 56789999999999999999
Q ss_pred CChHHHHHHHHHhCCCCCC
Q 013607 390 RSDFAEGVRAVLVDKDQNP 408 (439)
Q Consensus 390 ~~d~~egv~a~l~~K~r~P 408 (439)
++|++||+++|+ +| |+|
T Consensus 233 ~~d~~eg~~af~-ek-r~p 249 (249)
T PRK07938 233 AGVSDEHRDAFV-EK-RKA 249 (249)
T ss_pred CccHHHHHHHHH-hc-CCC
Confidence 999999999999 77 566
No 61
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.3e-50 Score=385.26 Aligned_cols=243 Identities=20% Similarity=0.264 Sum_probs=213.7
Q ss_pred ceEEEEecC---cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCC
Q 013607 67 FVKGNVHPN---GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (439)
Q Consensus 67 ~i~~~~~~~---~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~ 143 (439)
.|.++. ++ +|++||||||++.|+||.+|+++|.++++.++.|+++|+|||+|.| ++||+|+|++++.... . .
T Consensus 4 ~i~~~~-~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~--~-~ 78 (251)
T PRK06023 4 HILVER-PGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTE-GCFSAGNDMQDFLAAA--M-G 78 (251)
T ss_pred eEEEEe-ecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCeecCcCHHHHhhcc--c-c
Confidence 477775 44 5999999999999999999999999999999999999999999997 7999999999875421 0 0
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCc
Q 013607 144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG 223 (439)
Q Consensus 144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~ 223 (439)
. ..+......++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+++++++++|.
T Consensus 79 ~---~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~ 155 (251)
T PRK06023 79 G---TSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGH 155 (251)
T ss_pred c---hhhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhH
Confidence 1 1123344567788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHH
Q 013607 224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT 303 (439)
Q Consensus 224 ~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~ 303 (439)
. +++++++||+.++ |+||+++|||+++||.+++.+.+.
T Consensus 156 ~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------- 193 (251)
T PRK06023 156 Q-RAFALLALGEGFS-AEAAQEAGLIWKIVDEEAVEAETL---------------------------------------- 193 (251)
T ss_pred H-HHHHHHHhCCCCC-HHHHHHcCCcceeeCHHHHHHHHH----------------------------------------
Confidence 8 9999999999999 999999999999999877664222
Q ss_pred hhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHH
Q 013607 304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV 383 (439)
Q Consensus 304 ~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~ 383 (439)
++|+ +|++.||.+++.+|++++... ..+.+.++.|.+.
T Consensus 194 ----------------------------~~a~----~l~~~~~~a~~~~K~~l~~~~----------~~l~~~~~~e~~~ 231 (251)
T PRK06023 194 ----------------------------KAAE----ELAAKPPQALQIARDLMRGPR----------EDILARIDEEAKH 231 (251)
T ss_pred ----------------------------HHHH----HHHhCCHHHHHHHHHHHHhch----------hhHHHHHHHHHHH
Confidence 3444 799999999999999998654 3588889999998
Q ss_pred HHhhCCCChHHHHHHHHH
Q 013607 384 ALRSSLRSDFAEGVRAVL 401 (439)
Q Consensus 384 ~~~~~~~~d~~egv~a~l 401 (439)
+...+.++|++||+++|+
T Consensus 232 ~~~~~~~~~~~e~~~af~ 249 (251)
T PRK06023 232 FAARLKSAEARAAFEAFM 249 (251)
T ss_pred HHHHhCCHHHHHHHHHHh
Confidence 899999999999999999
No 62
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-49 Score=382.76 Aligned_cols=241 Identities=20% Similarity=0.318 Sum_probs=213.1
Q ss_pred eEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCch
Q 013607 68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV 147 (439)
Q Consensus 68 i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 147 (439)
|.++. +++|++||||||+++|+||.+|+.+|.++++.++.+ ++|+|||||.| ++||+|+|+++... .
T Consensus 2 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g-~~F~aG~Dl~~~~~----------~ 68 (243)
T PRK07854 2 IGVTR-DGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQG-TVFCAGADLSGDVY----------A 68 (243)
T ss_pred ceEEE-eCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCC-CceecccCCccchh----------H
Confidence 45664 689999999999999999999999999999999865 89999999998 89999999985311 1
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHHH
Q 013607 148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG 227 (439)
Q Consensus 148 ~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~a 227 (439)
..+......++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. ++
T Consensus 69 ~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~-~a 147 (243)
T PRK07854 69 DDFPDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGG-RA 147 (243)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHH-HH
Confidence 22334455678889999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred HHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHhhcC
Q 013607 228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFS 307 (439)
Q Consensus 228 ~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~ 307 (439)
++|++||++++ |+||+++|||++|++ +. ++
T Consensus 148 ~~l~ltg~~~~-a~eA~~~Glv~~v~~---~~---~a------------------------------------------- 177 (243)
T PRK07854 148 RAMLLGAEKLT-AEQALATGMANRIGT---LA---DA------------------------------------------- 177 (243)
T ss_pred HHHHHcCCCcC-HHHHHHCCCcccccC---HH---HH-------------------------------------------
Confidence 99999999999 999999999999964 22 11
Q ss_pred CCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHHHhh
Q 013607 308 SEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRS 387 (439)
Q Consensus 308 ~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~ 387 (439)
.+||+ +|+++||.+++.+|++++.. .+++++++.|...+..+
T Consensus 178 -----------------------~~~a~----~l~~~~~~a~~~~K~~l~~~-----------~~~~~~~~~e~~~~~~~ 219 (243)
T PRK07854 178 -----------------------QAWAA----EIAGLAPLALQHAKRVLNDD-----------GAIEEAWPAHKELFDKA 219 (243)
T ss_pred -----------------------HHHHH----HHHhCCHHHHHHHHHHHHcc-----------CCHHHHHHHHHHHHHHH
Confidence 25555 78999999999999999853 35889999999999999
Q ss_pred CCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 388 SLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 388 ~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
+.++|++||+++|+ +| |+|.|++
T Consensus 220 ~~~~d~~eg~~af~-~k-r~p~~~~ 242 (243)
T PRK07854 220 WASQDAIEAQVARI-EK-RPPKFQG 242 (243)
T ss_pred hcCchHHHHHHHHh-CC-CCCCCCC
Confidence 99999999999999 77 7999975
No 63
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-49 Score=384.65 Aligned_cols=255 Identities=22% Similarity=0.320 Sum_probs=220.7
Q ss_pred ccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCC
Q 013607 65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT 144 (439)
Q Consensus 65 ~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 144 (439)
+..+.++. +++|++|+||||++.|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++.... ....
T Consensus 5 ~~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~--~~~~ 80 (260)
T PRK07827 5 DTLVRYAV-DGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTG-GTFCAGADLSEAGGGG--GDPY 80 (260)
T ss_pred CcceEEEe-eCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC-CCccCCcChHHHhhcc--cCch
Confidence 45577774 789999999999999999999999999999999999999999999997 8999999999875420 0111
Q ss_pred CchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCch
Q 013607 145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG 224 (439)
Q Consensus 145 ~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~ 224 (439)
+....++..+..++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+++++++++| .
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~~-~ 159 (260)
T PRK07827 81 DAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSP-R 159 (260)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhhH-H
Confidence 112234555667888999999999999999999999999999999999999999999999999999999999999854 5
Q ss_pred HHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHh
Q 013607 225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITS 304 (439)
Q Consensus 225 ~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~ 304 (439)
++++++++|+.++ |+||+++|||+++++ ++.+.+.
T Consensus 160 -~a~~l~l~g~~~~-a~eA~~~Glv~~v~~--~l~~~a~----------------------------------------- 194 (260)
T PRK07827 160 -AAARYYLTGEKFG-AAEAARIGLVTAAAD--DVDAAVA----------------------------------------- 194 (260)
T ss_pred -HHHHHHHhCCccC-HHHHHHcCCcccchH--HHHHHHH-----------------------------------------
Confidence 8999999999999 999999999999974 3443221
Q ss_pred hcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHH
Q 013607 305 CFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVA 384 (439)
Q Consensus 305 ~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~ 384 (439)
++| ++|++.||.+++.+|+++++.. ...+.+.++.|...+
T Consensus 195 ---------------------------~~a----~~la~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~~~~~~ 234 (260)
T PRK07827 195 ---------------------------ALL----ADLRRGSPQGLAESKALTTAAV---------LAGFDRDAEELTEES 234 (260)
T ss_pred ---------------------------HHH----HHHHhCCHHHHHHHHHHHHhhh---------cCCHHHHHHHHHHHH
Confidence 334 3799999999999999999876 567999999999999
Q ss_pred HhhCCCChHHHHHHHHHhCCCCCCCCC
Q 013607 385 LRSSLRSDFAEGVRAVLVDKDQNPKWN 411 (439)
Q Consensus 385 ~~~~~~~d~~egv~a~l~~K~r~P~w~ 411 (439)
...+.++|++||+++|+ +| |+|+|+
T Consensus 235 ~~~~~~~~~~~~~~af~-~k-r~p~~~ 259 (260)
T PRK07827 235 ARLFVSDEAREGMTAFL-QK-RPPRWA 259 (260)
T ss_pred HHHhcChhHHHHHHHHh-cC-CCCCCC
Confidence 99999999999999999 77 689996
No 64
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=1.1e-49 Score=389.31 Aligned_cols=253 Identities=19% Similarity=0.235 Sum_probs=218.2
Q ss_pred CcccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CCcccCCcchhhhHhhhcC
Q 013607 63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGP-RAFCAGMDIKGVVAEIQKD 141 (439)
Q Consensus 63 ~~~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~-~~F~aG~Dl~~~~~~~~~~ 141 (439)
...+.|.++..+++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|+ ++||+|+|++++... .
T Consensus 8 ~~~~~i~~~~~~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~---~ 83 (278)
T PLN03214 8 GATPGVRVDRRPGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAP---K 83 (278)
T ss_pred CCCCceEEEEcCCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhcc---c
Confidence 345678887536899999999986 69999999999999999999999999999999873 699999999987531 1
Q ss_pred CCCCchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCC-CCChhHHHHHhhC
Q 013607 142 RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGL-FPDVGFSYIAAKG 220 (439)
Q Consensus 142 ~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl-~P~~G~~~~l~r~ 220 (439)
........+......++..|..+||||||+|||+|+|||++|+++|||||++++++|++||+++|+ +|++|++++|+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~ 163 (278)
T PLN03214 84 TSAARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRV 163 (278)
T ss_pred cchHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHh
Confidence 111112233333345777899999999999999999999999999999999999999999999999 5999999999999
Q ss_pred CCchHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchh
Q 013607 221 PGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLP 300 (439)
Q Consensus 221 ~G~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 300 (439)
+|.. ++++|++||+.++ |+||+++||||++||.+++.+.+.
T Consensus 164 ~G~~-~a~~llltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------- 204 (278)
T PLN03214 164 IDRK-VAESLLLRGRLVR-PAEAKQLGLIDEVVPAAALMEAAA------------------------------------- 204 (278)
T ss_pred cCHH-HHHHHHHcCCccC-HHHHHHcCCCcEecChHHHHHHHH-------------------------------------
Confidence 9998 9999999999999 999999999999999877654222
Q ss_pred HHHhhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHH
Q 013607 301 QITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYE 380 (439)
Q Consensus 301 ~i~~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e 380 (439)
+|++ +|++.||.+++.+|+++++.. ..+++++++.|
T Consensus 205 -------------------------------~~a~----~l~~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e 240 (278)
T PLN03214 205 -------------------------------SAME----RALKLPSAARAATKALLREEF---------SAAWEAYYEEE 240 (278)
T ss_pred -------------------------------HHHH----HHHcCCHHHHHHHHHHHHhhH---------HHHHHHHHHHH
Confidence 3343 799999999999999999876 45789999999
Q ss_pred HHHHHhhCCCChHHHHHHHHHh
Q 013607 381 YRVALRSSLRSDFAEGVRAVLV 402 (439)
Q Consensus 381 ~~~~~~~~~~~d~~egv~a~l~ 402 (439)
.+.+...+.++|++||+++|++
T Consensus 241 ~~~~~~~~~s~d~~egi~afle 262 (278)
T PLN03214 241 AKGGWKMLSEPSIIKALGGVME 262 (278)
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999999999994
No 65
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.8e-49 Score=381.44 Aligned_cols=253 Identities=16% Similarity=0.188 Sum_probs=216.0
Q ss_pred cccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCC
Q 013607 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (439)
Q Consensus 64 ~~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~ 143 (439)
.++.+.++. +++|++|+||||++.|+||.+|+.+|.++++.++. ++|+|||+|.| ++||+|+|++++.... . .
T Consensus 2 ~~~~i~~~~-~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~--~vr~vVl~g~g-~~FsaG~Dl~~~~~~~--~-~ 74 (255)
T PRK07112 2 DYQTIRVRQ-QGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCEH--AATIVVLEGLP-EVFCFGADFSAIAEKP--D-A 74 (255)
T ss_pred CCceEEEEe-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhc--CceEEEEEcCC-CCcccCcCHHHHhhcc--c-c
Confidence 356788885 78999999999999999999999999999999983 59999999997 8999999999875421 0 1
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCc
Q 013607 144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG 223 (439)
Q Consensus 144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~ 223 (439)
...........+.++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++| +.+|++++|.
T Consensus 75 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~ 153 (255)
T PRK07112 75 GRADLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGT 153 (255)
T ss_pred chhhhhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCH
Confidence 111111223345678889999999999999999999999999999999999999999999999999865 5679999999
Q ss_pred hHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHH
Q 013607 224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT 303 (439)
Q Consensus 224 ~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~ 303 (439)
. ++++++++|+.++ |+||+++||||++||+++.. +
T Consensus 154 ~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~~~--~----------------------------------------- 188 (255)
T PRK07112 154 Q-KAHYMTLMTQPVT-AQQAFSWGLVDAYGANSDTL--L----------------------------------------- 188 (255)
T ss_pred H-HHHHHHHhCCccc-HHHHHHcCCCceecCcHHHH--H-----------------------------------------
Confidence 8 9999999999999 99999999999999864421 1
Q ss_pred hhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHH
Q 013607 304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV 383 (439)
Q Consensus 304 ~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~ 383 (439)
.++++ +|++.||.+++.+|++++... ..+.+.++.|.+.
T Consensus 189 ---------------------------~~~a~----~l~~~~p~a~~~~K~~~~~~~----------~~~~~~~~~e~~~ 227 (255)
T PRK07112 189 ---------------------------RKHLL----RLRCLNKAAVARYKSYASTLD----------DTVAAARPAALAA 227 (255)
T ss_pred ---------------------------HHHHH----HHHhCCHHHHHHHHHHHHHhh----------hhHHHHHHHHHHH
Confidence 14444 799999999999999998653 3588999999999
Q ss_pred HHhhCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 384 ALRSSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 384 ~~~~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
...++.++|++||+.+|+ +| |+|.|+.
T Consensus 228 ~~~~~~~~~~~eg~~af~-~k-r~p~~~~ 254 (255)
T PRK07112 228 NIEMFADPENLRKIARYV-ET-GKFPWEA 254 (255)
T ss_pred HHHHHcChHHHHHHHHHH-cC-CCCCCCC
Confidence 999999999999999999 77 7999973
No 66
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=5.3e-49 Score=388.93 Aligned_cols=262 Identities=21% Similarity=0.249 Sum_probs=216.7
Q ss_pred ccceEEEEe-cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC------CCcccCCcchhhhHh
Q 013607 65 EEFVKGNVH-PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGP------RAFCAGMDIKGVVAE 137 (439)
Q Consensus 65 ~~~i~~~~~-~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~------~~F~aG~Dl~~~~~~ 137 (439)
++.|.++.. +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.|+ ++||+|+|++++...
T Consensus 22 ~~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~ 101 (302)
T PRK08321 22 FTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRD 101 (302)
T ss_pred ceeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccc
Confidence 445777741 6889999999999999999999999999999999999999999999973 699999999976321
Q ss_pred hh--cC-CCCC--chHHHHH-HHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEc-CCeeEeccccccCCCCC
Q 013607 138 IQ--KD-RNTP--LVPKVFT-AEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT-EKTLLAMPENGIGLFPD 210 (439)
Q Consensus 138 ~~--~~-~~~~--~~~~~~~-~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~-e~a~f~~pe~~lGl~P~ 210 (439)
.. .. .... ....... ....+...+..+||||||+|||+|+|||++|+++||||||+ ++++|++||+++|++|+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~ 181 (302)
T PRK08321 102 GYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDG 181 (302)
T ss_pred cccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCC
Confidence 00 00 0000 0001111 12245667889999999999999999999999999999999 69999999999999999
Q ss_pred hhHHHHHhhCCCchHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCC
Q 013607 211 VGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPE 290 (439)
Q Consensus 211 ~G~~~~l~r~~G~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~ 290 (439)
+|++++|++++|.. ++++|++||+.++ |+||+++|||+++||++++.+.+.
T Consensus 182 ~~~~~~L~r~vG~~-~A~~l~ltG~~~~-A~eA~~~GLv~~vv~~~~l~~~a~--------------------------- 232 (302)
T PRK08321 182 GYGSAYLARQVGQK-FAREIFFLGRTYS-AEEAHDMGAVNAVVPHAELETEAL--------------------------- 232 (302)
T ss_pred chHHHHHHHHhCHH-HHHHHHHcCCccC-HHHHHHCCCceEeeCHHHHHHHHH---------------------------
Confidence 99999999999998 9999999999999 999999999999999887764322
Q ss_pred CCchhhcchhHHHhhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCcccc
Q 013607 291 GEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNEL 370 (439)
Q Consensus 291 ~~~~~~~~~~~i~~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~ 370 (439)
+||+ +|++.||.+++.+|++++... .
T Consensus 233 -----------------------------------------~~a~----~la~~~~~a~~~~K~~l~~~~---------~ 258 (302)
T PRK08321 233 -----------------------------------------EWAR----EINGKSPTAMRMLKYAFNLTD---------D 258 (302)
T ss_pred -----------------------------------------HHHH----HHHhCCHHHHHHHHHHHHhhh---------c
Confidence 3444 799999999999999998764 2
Q ss_pred CCHHHHHHHHHHHHHhhCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 371 SKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 371 ~~l~~~l~~e~~~~~~~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
.+.+....|.+.+..++.++|++||+.+|+ +| |+|.|+.
T Consensus 259 -~~~~~~~~e~~~~~~~~~~~d~~egi~af~-ek-r~p~~~~ 297 (302)
T PRK08321 259 -GLVGQQLFAGEATRLAYMTDEAQEGRDAFL-EK-RDPDWSD 297 (302)
T ss_pred -ccHHHHHHHHHHHHHHhcCHHHHHHHHHHh-cc-CCCCCCC
Confidence 344445568888888999999999999999 77 7999975
No 67
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=1.3e-49 Score=382.70 Aligned_cols=244 Identities=31% Similarity=0.485 Sum_probs=222.1
Q ss_pred EEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHH
Q 013607 70 GNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPK 149 (439)
Q Consensus 70 ~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 149 (439)
|+. +|+|++|+||||++.|+||.+|+.+|.++|+.++.|+++++||++|.| ++||+|+|++++... .......
T Consensus 2 ~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~-~~F~~G~Dl~~~~~~-----~~~~~~~ 74 (245)
T PF00378_consen 2 YEI-EDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGG-KAFCAGADLKEFLNS-----DEEEARE 74 (245)
T ss_dssp EEE-ETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEEST-SESBESB-HHHHHHH-----HHHHHHH
T ss_pred EEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecc-cccccccchhhhhcc-----ccccccc
Confidence 564 799999999999999999999999999999999999999999999986 899999999998874 1233456
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHHHHH
Q 013607 150 VFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAY 229 (439)
Q Consensus 150 ~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~a~~ 229 (439)
+....+.++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.. ++++
T Consensus 75 ~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-~a~~ 153 (245)
T PF00378_consen 75 FFRRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPS-RARE 153 (245)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHH-HHHH
T ss_pred cchhhccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeecc-cccc
Confidence 777888899999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred HhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHhhcCCC
Q 013607 230 LGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSE 309 (439)
Q Consensus 230 l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~ 309 (439)
+++||+.++ |+||+++||||+++|++++.+.+..
T Consensus 154 l~l~g~~~~-a~eA~~~Glv~~v~~~~~l~~~a~~--------------------------------------------- 187 (245)
T PF00378_consen 154 LLLTGEPIS-AEEALELGLVDEVVPDEELDEEALE--------------------------------------------- 187 (245)
T ss_dssp HHHHTCEEE-HHHHHHTTSSSEEESGGGHHHHHHH---------------------------------------------
T ss_pred cccccccch-hHHHHhhcceeEEcCchhhhHHHHH---------------------------------------------
Confidence 999999999 9999999999999999887643332
Q ss_pred CCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHHHhhCC
Q 013607 310 KSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSL 389 (439)
Q Consensus 310 ~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~ 389 (439)
++ ++++..||.+++.+|+.+++.. ...+.+.++.|.+.+..++.
T Consensus 188 -----------------------~a----~~l~~~~~~a~~~~K~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 231 (245)
T PF00378_consen 188 -----------------------LA----KRLAAKPPSALRATKKALNRAL---------EQSLEEALEFEQDLFAECFK 231 (245)
T ss_dssp -----------------------HH----HHHHTSCHHHHHHHHHHHHHHH---------HSHHHHHHHHHHHHHHHHHT
T ss_pred -----------------------HH----HHHhcCCHHHHHHHHHHHHHHH---------HhhHHHHHHHHHHHHHHHcC
Confidence 33 3799999999999999999976 56799999999999999999
Q ss_pred CChHHHHHHHHHhCC
Q 013607 390 RSDFAEGVRAVLVDK 404 (439)
Q Consensus 390 ~~d~~egv~a~l~~K 404 (439)
++|++||+++|+ ||
T Consensus 232 ~~~~~e~~~~f~-eK 245 (245)
T PF00378_consen 232 SEDFQEGIAAFL-EK 245 (245)
T ss_dssp SHHHHHHHHHHH-TT
T ss_pred CHHHHHHHHHHh-Cc
Confidence 999999999999 66
No 68
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=4.2e-48 Score=372.88 Aligned_cols=245 Identities=16% Similarity=0.204 Sum_probs=217.3
Q ss_pred cccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCC
Q 013607 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN 143 (439)
Q Consensus 64 ~~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~ 143 (439)
.+..+.++. +++|++|+||||++.|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.... .
T Consensus 3 ~~~~~~~~~-~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~----~ 76 (249)
T PRK07110 3 MKVVELREV-EEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYP-NYFATGGTQEGLLSLQ----T 76 (249)
T ss_pred CCceEEEEe-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCeeCCcChHHHhhcc----c
Confidence 456677775 789999999999999999999999999999999999999999999998 8999999999875421 0
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCc
Q 013607 144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG 223 (439)
Q Consensus 144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~ 223 (439)
.. ..+. . ..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus 77 ~~--~~~~-~-~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~ 152 (249)
T PRK07110 77 GK--GTFT-E-ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGL 152 (249)
T ss_pred hh--hhHh-h-HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCH
Confidence 11 1122 2 467788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHH
Q 013607 224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT 303 (439)
Q Consensus 224 ~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~ 303 (439)
. +++++++||+.++ |+||+++|||++|+|++++.+.+.
T Consensus 153 ~-~a~~llltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------- 190 (249)
T PRK07110 153 A-LGQEMLLTARYYR-GAELKKRGVPFPVLPRAEVLEKAL---------------------------------------- 190 (249)
T ss_pred H-HHHHHHHcCCccC-HHHHHHcCCCeEEeChHHHHHHHH----------------------------------------
Confidence 8 9999999999999 999999999999999877664222
Q ss_pred hhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHH
Q 013607 304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV 383 (439)
Q Consensus 304 ~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~ 383 (439)
++|+ ++++.||.+++.+|+++++.. ...+.+.++.|...
T Consensus 191 ----------------------------~~a~----~la~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~ 229 (249)
T PRK07110 191 ----------------------------ELAR----SLAEKPRHSLVLLKDHLVADR---------RRRLPEVIEQEVAM 229 (249)
T ss_pred ----------------------------HHHH----HHHhCCHHHHHHHHHHHHHhh---------hccHHHHHHHHHHH
Confidence 3333 799999999999999999876 56899999999999
Q ss_pred HHhhCCCChHHHHHHHHH
Q 013607 384 ALRSSLRSDFAEGVRAVL 401 (439)
Q Consensus 384 ~~~~~~~~d~~egv~a~l 401 (439)
+...+.++|++||+++.-
T Consensus 230 ~~~~~~~~~~~egi~~~~ 247 (249)
T PRK07110 230 HEKTFHQPEVKRRIESLY 247 (249)
T ss_pred HHHHhCCHhHHHHHHHhc
Confidence 999999999999999863
No 69
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.4e-48 Score=372.23 Aligned_cols=244 Identities=23% Similarity=0.299 Sum_probs=212.0
Q ss_pred CcccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCC
Q 013607 63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR 142 (439)
Q Consensus 63 ~~~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~ 142 (439)
|+++.+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....
T Consensus 1 ~~~~~v~~~~-~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~---- 74 (258)
T PRK06190 1 MTEPILLVET-HDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGAD-PAFCAGLDLKELGGDG---- 74 (258)
T ss_pred CCCceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCccCCcCHHHHhccc----
Confidence 4567888885 799999999999999999999999999999999999999999999997 8999999999875411
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCC
Q 013607 143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG 222 (439)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G 222 (439)
... . .......++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|
T Consensus 75 -~~~-~-~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG 151 (258)
T PRK06190 75 -SAY-G-AQDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVG 151 (258)
T ss_pred -chh-h-HHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhC
Confidence 111 1 1223456778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHH
Q 013607 223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQI 302 (439)
Q Consensus 223 ~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i 302 (439)
.. ++++|++||++++ |+||+++||||+++|++++.+.+.
T Consensus 152 ~~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~--------------------------------------- 190 (258)
T PRK06190 152 IG-RARRMSLTGDFLD-AADALRAGLVTEVVPHDELLPRAR--------------------------------------- 190 (258)
T ss_pred HH-HHHHHHHhCCccC-HHHHHHcCCCeEecCHhHHHHHHH---------------------------------------
Confidence 98 9999999999999 999999999999999877764222
Q ss_pred HhhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHH
Q 013607 303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYR 382 (439)
Q Consensus 303 ~~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~ 382 (439)
+||+ +|+++||.+++.+|++++... ..++.+.++.|..
T Consensus 191 -----------------------------~~a~----~la~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~ 228 (258)
T PRK06190 191 -----------------------------RLAA----SIAGNNPAAVRALKASYDDGA---------AAQTGDALALEAE 228 (258)
T ss_pred -----------------------------HHHH----HHHcCCHHHHHHHHHHHHHhh---------cCCHHHHHHHHHH
Confidence 3444 789999999999999999876 5679999999999
Q ss_pred HHHhhCCC--ChHHHHHH
Q 013607 383 VALRSSLR--SDFAEGVR 398 (439)
Q Consensus 383 ~~~~~~~~--~d~~egv~ 398 (439)
.+...+.+ +++..-++
T Consensus 229 ~~~~~~~s~~~~~~~~~~ 246 (258)
T PRK06190 229 AARAHNRSVSPDGIAARR 246 (258)
T ss_pred HHHHHHcCCChHHHHHHH
Confidence 99988876 44444333
No 70
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=5e-47 Score=398.68 Aligned_cols=261 Identities=11% Similarity=0.038 Sum_probs=223.3
Q ss_pred cccceEEEEe-cCcEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCCCCCcccC
Q 013607 64 AEEFVKGNVH-PNGVAVITLDRPKAL-------------NAMNLDMDIKYKSFLDEWES-DPRVKCVLIEGSGPRAFCAG 128 (439)
Q Consensus 64 ~~~~i~~~~~-~~~V~~Itlnrp~~~-------------Nal~~~m~~eL~~~l~~~~~-d~~vr~vVltg~g~~~F~aG 128 (439)
.|+++.++.+ +++|++||||||+++ |+||.+|+.+|.++++.++. |+++|+|||||.|+++||+|
T Consensus 258 ~~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG 337 (550)
T PRK08184 258 RYRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLA 337 (550)
T ss_pred eeEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeC
Confidence 3555666542 578999999999988 68999999999999999986 79999999999873499999
Q ss_pred CcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEEC-Ccccchh-hhhhhcCCeEEEc-------CCeeEe
Q 013607 129 MDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMD-GVTMGFG-IGISGHGRYRIVT-------EKTLLA 199 (439)
Q Consensus 129 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavn-G~a~GgG-~~lal~cD~ria~-------e~a~f~ 199 (439)
+|++.+.. ...............++.+|..+||||||+|| |+|+||| ++|+++||+||++ ++++|+
T Consensus 338 ~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~ 412 (550)
T PRK08184 338 ADATLLAH-----KDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAIT 412 (550)
T ss_pred CChhhhcc-----cchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEE
Confidence 99873211 01101122333344577889999999999997 9999999 9999999999999 999999
Q ss_pred ccccccCCCCChhHHHHHhhC-CCchHHHHHH--hhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHH
Q 013607 200 MPENGIGLFPDVGFSYIAAKG-PGGGSVGAYL--GMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQ 276 (439)
Q Consensus 200 ~pe~~lGl~P~~G~~~~l~r~-~G~~~~a~~l--~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~ 276 (439)
+||+++|++|++|++++|+++ +|.+ +++++ ++||+.++ |+||+++||||++||++++++.+.
T Consensus 413 ~pe~~~Gl~p~~gg~~~L~r~~vG~~-~A~~~~l~~tg~~i~-A~eA~~~GLv~~vv~~~~l~~~a~------------- 477 (550)
T PRK08184 413 LSALNFGLYPMVNGLSRLARRFYGEP-DPLAAVRAKIGQPLD-ADAAEELGLVTAAPDDIDWEDEVR------------- 477 (550)
T ss_pred CccccccCCCCCCcHHHhHHHhcChH-HHHHHHHHHhCCcCC-HHHHHHcCCcccccChHHHHHHHH-------------
Confidence 999999999999999999988 7998 99997 58999999 999999999999999888765333
Q ss_pred HHHHHHHhccCCCCCCchhhcchhHHHhhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 013607 277 DIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYF 356 (439)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l 356 (439)
++|+ +|+++||.+++.+|+++
T Consensus 478 -------------------------------------------------------~~a~----~ia~~~p~a~~~~K~~l 498 (550)
T PRK08184 478 -------------------------------------------------------IALE----ERASLSPDALTGMEANL 498 (550)
T ss_pred -------------------------------------------------------HHHH----HHHhCCHHHHHHHHHHH
Confidence 3443 79999999999999999
Q ss_pred HHHhhhcCCCccccCCHHHH-HHHHHHHHHhhCCCChHHH---HHHHHHhCCCCCCCCCCCC
Q 013607 357 SKVASAHGKTDNELSKLSGV-MKYEYRVALRSSLRSDFAE---GVRAVLVDKDQNPKWNPAS 414 (439)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~-l~~e~~~~~~~~~~~d~~e---gv~a~l~~K~r~P~w~~~~ 414 (439)
+... ..+++++ +.+|.+.+..++.++|.+| |+++|+ +| |+|+|+..+
T Consensus 499 ~~~~---------~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~-ek-r~~~f~~~~ 549 (550)
T PRK08184 499 RFAG---------PETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYG-TG-QKAQFDWNR 549 (550)
T ss_pred HhcC---------CCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhc-cC-CCCCCCCCC
Confidence 9876 6789999 9999999999999999999 999999 78 899998765
No 71
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=8.6e-47 Score=395.62 Aligned_cols=259 Identities=12% Similarity=0.047 Sum_probs=222.3
Q ss_pred ccceEEEE-ecCcEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHh-cCCCceEEEEEeCCCCC-cccC
Q 013607 65 EEFVKGNV-HPNGVAVITLDRPKAL-------------NAMNLDMDIKYKSFLDEWE-SDPRVKCVLIEGSGPRA-FCAG 128 (439)
Q Consensus 65 ~~~i~~~~-~~~~V~~Itlnrp~~~-------------Nal~~~m~~eL~~~l~~~~-~d~~vr~vVltg~g~~~-F~aG 128 (439)
|.+|.+.. ++++|++||||||+++ |+|+.+|+.+|.+++..++ +|+++|+|||||.| ++ ||+|
T Consensus 255 ~~~~~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G-~~~F~aG 333 (546)
T TIGR03222 255 YPTVDVAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQG-DAELVLA 333 (546)
T ss_pred eeeEEEEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCC-CCceecC
Confidence 45555543 3688999999999999 9999999999999999998 45999999999998 66 9999
Q ss_pred CcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEE-CCcccchh-hhhhhcCCeEEE-------cCCeeEe
Q 013607 129 MDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLM-DGVTMGFG-IGISGHGRYRIV-------TEKTLLA 199 (439)
Q Consensus 129 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav-nG~a~GgG-~~lal~cD~ria-------~e~a~f~ 199 (439)
+|++.+.. .+.............++..|..+||||||+| ||+|+||| ++|+++||+||+ +++++|+
T Consensus 334 ~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~ 408 (546)
T TIGR03222 334 ADALLEAH-----KDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAIT 408 (546)
T ss_pred cCcccccc-----ccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEe
Confidence 99984211 0111112233333457789999999999999 89999999 999999999999 8999999
Q ss_pred ccccccCCCCChhHHHHHhhCC-CchHHH--HHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHH
Q 013607 200 MPENGIGLFPDVGFSYIAAKGP-GGGSVG--AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQ 276 (439)
Q Consensus 200 ~pe~~lGl~P~~G~~~~l~r~~-G~~~~a--~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~ 276 (439)
+||+++|++|++|++++|++++ |.+ ++ +++++||+.|+ |+||+++|||++++|++++.+.+.
T Consensus 409 ~~e~~lGl~p~~gg~~~L~~~v~G~~-~a~~~~~~ltg~~i~-A~eA~~~Glv~~vv~~~~l~~~a~------------- 473 (546)
T TIGR03222 409 LSELNFGLYPMVNGLSRLATRFYAEP-APVAAVRDKIGQALD-AEEAERLGLVTAAPDDIDWEDEIR------------- 473 (546)
T ss_pred CCccccccCCCcCcHHHHHHHhcCch-hHHHHHHHHhCCCCC-HHHHHHcCCcccccCchHHHHHHH-------------
Confidence 9999999999999999999998 987 88 55999999999 999999999999999988765332
Q ss_pred HHHHHHHhccCCCCCCchhhcchhHHHhhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 013607 277 DIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYF 356 (439)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l 356 (439)
+||+ +|+++||.+++.+|+++
T Consensus 474 -------------------------------------------------------~~a~----~la~~~p~a~~~~K~~l 494 (546)
T TIGR03222 474 -------------------------------------------------------IALE----ERASFSPDALTGLEANL 494 (546)
T ss_pred -------------------------------------------------------HHHH----HHHhcCHHHHHHHHHHH
Confidence 3444 79999999999999999
Q ss_pred HHHhhhcCCCccccCCHHHH-HHHHHHHHHhhCCCChHHH---HHHHHHhCCCCCCCCCCCC
Q 013607 357 SKVASAHGKTDNELSKLSGV-MKYEYRVALRSSLRSDFAE---GVRAVLVDKDQNPKWNPAS 414 (439)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~-l~~e~~~~~~~~~~~d~~e---gv~a~l~~K~r~P~w~~~~ 414 (439)
+... ..++++. +..|.+.+..++.++|.+| |+++|+ +| |+|+|+-.+
T Consensus 495 ~~~~---------~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~-ek-r~p~f~~~~ 545 (546)
T TIGR03222 495 RFAG---------PETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYG-SG-KKAQFDMER 545 (546)
T ss_pred hhcC---------CcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHc-cC-CCCCCCccC
Confidence 9876 6789999 9999999999999999999 999999 78 799998654
No 72
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.5e-45 Score=347.56 Aligned_cols=187 Identities=20% Similarity=0.269 Sum_probs=165.1
Q ss_pred ccceEEEEe----cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhc
Q 013607 65 EEFVKGNVH----PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQK 140 (439)
Q Consensus 65 ~~~i~~~~~----~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~ 140 (439)
+++|.++.. +++|++|+||||++ |+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++....
T Consensus 2 ~~~~~~~~~~~~~~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~-- 77 (222)
T PRK05869 2 NEFVNVVVSDGSQDAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGH-EIFSAGDDMPELRTLS-- 77 (222)
T ss_pred ccchhhhcccCcccCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcCcCcCHHHHhccC--
Confidence 455555542 58899999999986 999999999999999999999999999999997 8999999999875421
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhC
Q 013607 141 DRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG 220 (439)
Q Consensus 141 ~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~ 220 (439)
......+...+..++.++.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++++++
T Consensus 78 ---~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ 154 (222)
T PRK05869 78 ---AQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRA 154 (222)
T ss_pred ---hhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHH
Confidence 11112233444568889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHH
Q 013607 221 PGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGS 260 (439)
Q Consensus 221 ~G~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~ 260 (439)
+|.. +++++++||+.++ |+||+++||||+++|++++.+
T Consensus 155 ig~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~ 192 (222)
T PRK05869 155 AGPS-RAKELVFSGRFFD-AEEALALGLIDEMVAPDDVYD 192 (222)
T ss_pred hCHH-HHHHHHHcCCCcC-HHHHHHCCCCCEeeCchHHHH
Confidence 9997 9999999999999 999999999999999887664
No 73
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.3e-45 Score=358.09 Aligned_cols=244 Identities=20% Similarity=0.295 Sum_probs=203.3
Q ss_pred CcccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCC
Q 013607 63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR 142 (439)
Q Consensus 63 ~~~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~ 142 (439)
|+++.+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++........
T Consensus 1 ~~~~~v~~~~-~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G-~~FcaG~Dl~~~~~~~~~~~ 78 (288)
T PRK08290 1 MEYEYVRYEV-AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAG-KHFSAGHDLGSGTPGRDRDP 78 (288)
T ss_pred CCCceEEEEe-eCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CccccCCCcccccccccccc
Confidence 4567788885 789999999999999999999999999999999999999999999998 89999999998642110000
Q ss_pred --------------CCC---chHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEecccccc
Q 013607 143 --------------NTP---LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGI 205 (439)
Q Consensus 143 --------------~~~---~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~l 205 (439)
... ........+..++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~l 158 (288)
T PRK08290 79 GPDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRM 158 (288)
T ss_pred ccccccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCccccc
Confidence 000 011122334456778999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHhhCCCchHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhc
Q 013607 206 GLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 285 (439)
Q Consensus 206 Gl~P~~G~~~~l~r~~G~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~ 285 (439)
|+ |+ ++++++++++|.. ++++|+|||+.|+ |+||+++||||++||++++.+.+.
T Consensus 159 Gl-~~-~~~~~l~~~iG~~-~A~~llltG~~i~-A~eA~~~GLV~~vv~~~~l~~~a~---------------------- 212 (288)
T PRK08290 159 GI-PG-VEYFAHPWELGPR-KAKELLFTGDRLT-ADEAHRLGMVNRVVPRDELEAETL---------------------- 212 (288)
T ss_pred Cc-Cc-chHHHHHHHhhHH-HHHHHHHcCCCCC-HHHHHHCCCccEeeCHHHHHHHHH----------------------
Confidence 98 44 4567789999998 9999999999999 999999999999999877664222
Q ss_pred cCCCCCCchhhcchhHHHhhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCC
Q 013607 286 SSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGK 365 (439)
Q Consensus 286 ~~~~~~~~~~~~~~~~i~~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~ 365 (439)
+||+ +|++.||.+++.+|+++++..
T Consensus 213 ----------------------------------------------~~a~----~la~~~~~a~~~~K~~~~~~~----- 237 (288)
T PRK08290 213 ----------------------------------------------ELAR----RIAAMPPFGLRLTKRAVNQTL----- 237 (288)
T ss_pred ----------------------------------------------HHHH----HHHhCCHHHHHHHHHHHHHHH-----
Confidence 4444 799999999999999999876
Q ss_pred CccccCCHHHHHHHHHHHHHhhC-CCCh
Q 013607 366 TDNELSKLSGVMKYEYRVALRSS-LRSD 392 (439)
Q Consensus 366 ~~~~~~~l~~~l~~e~~~~~~~~-~~~d 392 (439)
...++++++..|.+.....+ ++++
T Consensus 238 ---~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (288)
T PRK08290 238 ---DAQGFRAALDAVFDLHQLGHAHNAE 262 (288)
T ss_pred ---hhccHHHHHHHHHHHHHHccccchh
Confidence 13369999999999998877 5665
No 74
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=5.8e-46 Score=334.11 Aligned_cols=262 Identities=19% Similarity=0.267 Sum_probs=231.8
Q ss_pred cceEEEE---ecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCC
Q 013607 66 EFVKGNV---HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR 142 (439)
Q Consensus 66 ~~i~~~~---~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~ 142 (439)
..+.++. .+.||.+|-+|||.+.|+|+.-|+++|.++++.+..|+.+|+|+|.+.-|+.||+|+||++-..+.
T Consensus 27 ~Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms---- 102 (291)
T KOG1679|consen 27 NEVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMS---- 102 (291)
T ss_pred ceeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCC----
Confidence 3444442 356899999999999999999999999999999999999999999998899999999999976543
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCC
Q 013607 143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG 222 (439)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G 222 (439)
++....|...+..++..+.++|.||||+|+|.|+|||++|+++||+|+++++++|+++|++++++|+.|++++|+|++|
T Consensus 103 -~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg 181 (291)
T KOG1679|consen 103 -PSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVG 181 (291)
T ss_pred -HHHHHHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHh
Confidence 4566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHH
Q 013607 223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQI 302 (439)
Q Consensus 223 ~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i 302 (439)
.. .+++|++||+.++ +.||..+||||++|...+-.+.+.
T Consensus 182 ~a-laKELIftarvl~-g~eA~~lGlVnhvv~qneegdaa~--------------------------------------- 220 (291)
T KOG1679|consen 182 VA-LAKELIFTARVLN-GAEAAKLGLVNHVVEQNEEGDAAY--------------------------------------- 220 (291)
T ss_pred HH-HHHhHhhhheecc-chhHHhcchHHHHHhcCccccHHH---------------------------------------
Confidence 97 9999999999999 899999999999997654222111
Q ss_pred HhhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHH
Q 013607 303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYR 382 (439)
Q Consensus 303 ~~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~ 382 (439)
+-|.+++++|.-+.|.+++++|..++.+. ..++...+..|..
T Consensus 221 -----------------------------~kal~lA~eilp~gPiavr~aKlAIn~G~---------evdiasgl~iEe~ 262 (291)
T KOG1679|consen 221 -----------------------------QKALELAREILPQGPIAVRLAKLAINLGM---------EVDIASGLSIEEM 262 (291)
T ss_pred -----------------------------HHHHHHHHHhccCCchhhhHHHHHhccCc---------eecccccccHHHH
Confidence 22333444889999999999999999987 5678888888888
Q ss_pred HHHhhCCCChHHHHHHHHHhCCCCCCCCCCC
Q 013607 383 VALRSSLRSDFAEGVRAVLVDKDQNPKWNPA 413 (439)
Q Consensus 383 ~~~~~~~~~d~~egv~a~l~~K~r~P~w~~~ 413 (439)
-..+..-+.|-.||+.+|- +| |+|.++++
T Consensus 263 CYaq~i~t~drLeglaaf~-ek-r~p~y~G~ 291 (291)
T KOG1679|consen 263 CYAQIIPTKDRLEGLAAFK-EK-RKPEYKGE 291 (291)
T ss_pred HHHhcCcHHHHHHHHHHHH-hh-cCCCcCCC
Confidence 8888899999999999999 68 79998763
No 75
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=2.1e-44 Score=392.51 Aligned_cols=289 Identities=20% Similarity=0.240 Sum_probs=225.1
Q ss_pred ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCc
Q 013607 67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (439)
Q Consensus 67 ~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 146 (439)
.+.++..+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.... ......
T Consensus 7 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~--~~~~~~ 83 (715)
T PRK11730 7 TLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAK-DAFIVGADITEFLSLF--AAPEEE 83 (715)
T ss_pred eEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCC-CccccCcCHHHHhhhc--cCCHHH
Confidence 4666644789999999999999999999999999999999999999999999998 7999999999875421 011111
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHH
Q 013607 147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV 226 (439)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~ 226 (439)
...+......++.++..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 84 ~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~-~ 162 (715)
T PRK11730 84 LSQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGAD-N 162 (715)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHH-H
Confidence 234555556778899999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHhhc
Q 013607 227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCF 306 (439)
Q Consensus 227 a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F 306 (439)
+++|++||+.++ |+||+++||||++||++++.+.+.++++...... +.......++..++.. ..+.++|
T Consensus 163 A~~llltG~~~~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~--------~~~~~~~~~~~~p~a~--~~~~~~~ 231 (715)
T PRK11730 163 ALEWIAAGKDVR-AEDALKVGAVDAVVAPEKLQEAALALLKQAIAGK--------LDWKARRQPKLEPLKL--SKIEAMM 231 (715)
T ss_pred HHHHHHcCCcCC-HHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcC--------CccccccCcccccccc--cchhHHH
Confidence 999999999999 9999999999999999998887777754411000 0000000000000000 0012222
Q ss_pred CCCCCHHHHHHHHHhcccccchhHHHHHHHHH-HHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHHH
Q 013607 307 SSEKSVRQIIEELKKHQSSAETSVAQWADEAL-QGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVAL 385 (439)
Q Consensus 307 ~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l-~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~ 385 (439)
. -..+++.+ ++..+..|..+ .++++++.+. ..+++++++.|.+.+.
T Consensus 232 ~-----------------------~~~~k~~~~~~~~~~~pa~~-~~~~~i~~~~---------~~~~~~~l~~E~~~~~ 278 (715)
T PRK11730 232 S-----------------------FTTAKGMVAQKAGKHYPAPM-TAVKTIEAAA---------GLGRDEALELEAKGFV 278 (715)
T ss_pred H-----------------------HHHHHHHHHHhhccCCccHH-HHHHHHHHHh---------cCCHHHHHHHHHHHHH
Confidence 1 12333222 34556666666 7777888876 5689999999999999
Q ss_pred hhCCCChHHHHHHHHHhC
Q 013607 386 RSSLRSDFAEGVRAVLVD 403 (439)
Q Consensus 386 ~~~~~~d~~egv~a~l~~ 403 (439)
.++.++|++||+++|+++
T Consensus 279 ~~~~s~d~~egi~aF~~~ 296 (715)
T PRK11730 279 KLAKTNVARALVGIFLND 296 (715)
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 999999999999999954
No 76
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.3e-43 Score=346.85 Aligned_cols=253 Identities=14% Similarity=0.087 Sum_probs=200.9
Q ss_pred CcccceEEEE-ecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEEeCCCCCcccCCcchhhhH
Q 013607 63 GAEEFVKGNV-HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWES-----DPRVKCVLIEGSGPRAFCAGMDIKGVVA 136 (439)
Q Consensus 63 ~~~~~i~~~~-~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~-----d~~vr~vVltg~g~~~F~aG~Dl~~~~~ 136 (439)
..+..+++.. .+++|++|+|| |++.|+||.+|+.+|.+++++++. |+++++|||+|.|+++||+|+|++++..
T Consensus 12 ~~~~~~~i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~ 90 (287)
T PRK08788 12 GELSQLRVYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAE 90 (287)
T ss_pred cccCceEEEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhh
Confidence 3455555543 36889999996 999999999999999999999998 8999999999994489999999998753
Q ss_pred hhhcCCCCCchHHHHHHHHHHHHHHH---hCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhH
Q 013607 137 EIQKDRNTPLVPKVFTAEYSLICKIS---EYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGF 213 (439)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~ 213 (439)
.. ..........+.......+..+. .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+
T Consensus 91 ~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~ 169 (287)
T PRK08788 91 LI-RAGDRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGA 169 (287)
T ss_pred hc-cccchHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchH
Confidence 11 01111111122222333333343 799999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCchHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCc
Q 013607 214 SYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEA 293 (439)
Q Consensus 214 ~~~l~r~~G~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (439)
++++++++|.. ++++|++||+.++ |+||++|||||+++|++++.+.+.
T Consensus 170 ~~~l~~~vG~~-~A~ellltG~~l~-A~eA~~~GLV~~vv~~~el~~~a~------------------------------ 217 (287)
T PRK08788 170 YSFLARRVGPK-LAEELILSGKLYT-AEELHDMGLVDVLVEDGQGEAAVR------------------------------ 217 (287)
T ss_pred HHHHHHHhhHH-HHHHHHHcCCCCC-HHHHHHCCCCcEecCchHHHHHHH------------------------------
Confidence 99999999998 9999999999999 999999999999999887764322
Q ss_pred hhhcchhHHHhhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCH
Q 013607 294 PLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKL 373 (439)
Q Consensus 294 ~~~~~~~~i~~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l 373 (439)
+|++ +|++. |.+....|+.++... ..++
T Consensus 218 --------------------------------------~~a~----~ia~~-~~~~~a~k~~~~~~~---------~~~~ 245 (287)
T PRK08788 218 --------------------------------------TFIR----KSKRK-LNGWRAMLRARRRVN---------PLSL 245 (287)
T ss_pred --------------------------------------HHHH----HHhcC-ccHHHHHHHHHHhhc---------cCCH
Confidence 4444 67766 777777777776654 4578
Q ss_pred HHHHHHHHHHHHhhCC-CChHHHHHHHHH
Q 013607 374 SGVMKYEYRVALRSSL-RSDFAEGVRAVL 401 (439)
Q Consensus 374 ~~~l~~e~~~~~~~~~-~~d~~egv~a~l 401 (439)
.+.++.|......++. ...-.+-|..|.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (287)
T PRK08788 246 EELMDITEIWVDAALQLEEKDLRTMERLV 274 (287)
T ss_pred HHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 9999998777776554 445577788877
No 77
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-43 Score=351.29 Aligned_cols=190 Identities=22% Similarity=0.301 Sum_probs=161.8
Q ss_pred cccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCC-
Q 013607 64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR- 142 (439)
Q Consensus 64 ~~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~- 142 (439)
.++.|.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++........
T Consensus 8 ~~~~v~~e~-~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G-~~FcaG~Dl~~~~~~~~~~~~ 85 (302)
T PRK08272 8 NLKTMTYEV-TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAG-KGFCAGYDLSAYAEGSSSGGG 85 (302)
T ss_pred CCCeEEEEe-ECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCcccCcCHHHHhhccccccc
Confidence 467788885 789999999999999999999999999999999999999999999998 89999999999864221000
Q ss_pred CC--------------CchH-----HHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEecccc
Q 013607 143 NT--------------PLVP-----KVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN 203 (439)
Q Consensus 143 ~~--------------~~~~-----~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~ 203 (439)
.. ..+. .++.....++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~ 165 (302)
T PRK08272 86 GGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPT 165 (302)
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcch
Confidence 00 0011 1234455677889999999999999999999999999999999999999999999
Q ss_pred ccCCCCChhHHHHHhhCCCchHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHH
Q 013607 204 GIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGS 260 (439)
Q Consensus 204 ~lGl~P~~G~~~~l~r~~G~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~ 260 (439)
++|.+|+. ..+++++|.. ++++|+|||+.|+ |+||+++||||++||++++.+
T Consensus 166 ~~gg~~~~---~~~~~~vG~~-~A~~llltG~~i~-a~eA~~~GLv~~vv~~~~l~~ 217 (302)
T PRK08272 166 RVWGVPAT---GMWAYRLGPQ-RAKRLLFTGDCIT-GAQAAEWGLAVEAVPPEELDE 217 (302)
T ss_pred hcccCChH---HHHHHHhhHH-HHHHHHHcCCccC-HHHHHHcCCCceecCHHHHHH
Confidence 98666643 3567889998 9999999999999 999999999999999877764
No 78
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=4.5e-43 Score=346.53 Aligned_cols=286 Identities=18% Similarity=0.129 Sum_probs=214.9
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHH
Q 013607 77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS 156 (439)
Q Consensus 77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (439)
+++|+||||+++|+||.+|+.+|.++++.++.|+++++|||||.|+++||+|+|++++..... ........+...++.
T Consensus 38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~--~~~~~~~~~~~~~~~ 115 (360)
T TIGR03200 38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYA--GNPQEYRQYMRLFND 115 (360)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcc--cChhHHHHHHHHHHH
Confidence 566999999999999999999999999999999999999999998679999999998765211 111223344455566
Q ss_pred HHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHHHHHHhhcCCC
Q 013607 157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKR 236 (439)
Q Consensus 157 l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~a~~l~ltG~~ 236 (439)
++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++++++||+.
T Consensus 116 l~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~-rA~~llltGe~ 194 (360)
T TIGR03200 116 MVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCE-QAMVSGTLCEP 194 (360)
T ss_pred HHHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHH-HHHHHHHhCCc
Confidence 78889999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred CCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCC----CCCCchhhcchhHHHhhcCCCCCH
Q 013607 237 ISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSD----PEGEAPLKLLLPQITSCFSSEKSV 312 (439)
Q Consensus 237 i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~i~~~F~~~~sv 312 (439)
++ |+||+++|||+++||+.+++ ..+ ..+|.-...+++..|... +.....++..+.++.++=....-+
T Consensus 195 ~s-A~EA~~~GLVd~VVp~~~~~---~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~l 265 (360)
T TIGR03200 195 WS-AHKAKRLGIIMDVVPALKVD---GKF-----VANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELIKQGTIDLSLL 265 (360)
T ss_pred Cc-HHHHHHcCChheecCchhcC---cch-----hcCcccchHHHHHHHhHHhcCCCcchhHHHHHHHHHhcccchHhHH
Confidence 99 99999999999999987764 222 223333333333333221 111123333333333221100011
Q ss_pred HHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHHHhhCCCCh
Q 013607 313 RQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSD 392 (439)
Q Consensus 313 ~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~d 392 (439)
++-.+++..++...-|.++.-++.-||... ...+...-+.-..++.-.+. .+
T Consensus 266 ------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-~~ 317 (360)
T TIGR03200 266 ------------------DEAVEALCAKLLNTFPECLTKSIEELRKPK---------LFAWNQNKENSRAWLALNMM-NE 317 (360)
T ss_pred ------------------HHHHHHHHHHHHHhchHHHHHHHHHhhhHH---------HHHHHhhhhhhHHHHHhhcc-cc
Confidence 122222333678888999999999999876 34455554555555555554 89
Q ss_pred HHHHHHHHHh
Q 013607 393 FAEGVRAVLV 402 (439)
Q Consensus 393 ~~egv~a~l~ 402 (439)
..+|++||-+
T Consensus 318 ~~~~~~~~~~ 327 (360)
T TIGR03200 318 ARTGFRAFNE 327 (360)
T ss_pred cchhhHHHhc
Confidence 9999999983
No 79
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=2.3e-44 Score=326.57 Aligned_cols=265 Identities=20% Similarity=0.315 Sum_probs=227.0
Q ss_pred cccceEEE--EecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhc-
Q 013607 64 AEEFVKGN--VHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQK- 140 (439)
Q Consensus 64 ~~~~i~~~--~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~- 140 (439)
+++.+.+. ..+.-|.++.||||.|+|+||..|+.|+.++++.+..||++|+|||.|+| +.||+|+|+..+......
T Consensus 17 s~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~G-KhFcaGIDl~~~~~~~~~~ 95 (292)
T KOG1681|consen 17 SYKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAG-KHFCAGIDLNDMASDRILQ 95 (292)
T ss_pred ccceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCC-cceecccCcchhhhhhccc
Confidence 46655555 34567999999999999999999999999999999999999999999998 999999998877653211
Q ss_pred CCC------CCchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHH
Q 013607 141 DRN------TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFS 214 (439)
Q Consensus 141 ~~~------~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~ 214 (439)
... ...+.++...++..+..|.+||||||++|||+|+|||+.|..+||+|+|+++|.|..-|+.+|+..+.|..
T Consensus 96 ~~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL 175 (292)
T KOG1681|consen 96 PEGDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTL 175 (292)
T ss_pred cccchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhH
Confidence 111 12344566666778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCchHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCch
Q 013607 215 YIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAP 294 (439)
Q Consensus 215 ~~l~r~~G~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (439)
.+||+.+|..+.++++.+|++.|. |.||++.|||.+|+|+.+-+- ..+
T Consensus 176 ~RlpkvVGn~s~~~elafTar~f~-a~EAl~~GLvSrvf~dk~~ll-~~~------------------------------ 223 (292)
T KOG1681|consen 176 NRLPKVVGNQSLARELAFTARKFS-ADEALDSGLVSRVFPDKEELL-NGA------------------------------ 223 (292)
T ss_pred hhhhHHhcchHHHHHHHhhhhhcc-hhhhhhcCcchhhcCCHHHHH-hhh------------------------------
Confidence 999999996669999999999999 999999999999998744221 011
Q ss_pred hhcchhHHHhhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHH
Q 013607 295 LKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLS 374 (439)
Q Consensus 295 ~~~~~~~i~~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~ 374 (439)
...|+ .|+.+||.+++.||+.|.+.+ +.+.+
T Consensus 224 ------------------------------------l~mA~----~Ia~KSpvaVqgTK~~L~ysr---------ehsv~ 254 (292)
T KOG1681|consen 224 ------------------------------------LPMAE----LIASKSPVAVQGTKENLLYSR---------EHSVE 254 (292)
T ss_pred ------------------------------------HHHHH----HhccCCceeeechHHHHHHHh---------hhhhh
Confidence 24444 799999999999999999998 68999
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHhCCCCCCCCC
Q 013607 375 GVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 411 (439)
Q Consensus 375 ~~l~~e~~~~~~~~~~~d~~egv~a~l~~K~r~P~w~ 411 (439)
+.|.+-..+....+.+.|+.+++.|-+ +|.+++.|.
T Consensus 255 ~sLnyvatwNms~L~s~Dl~~av~a~m-~k~k~~tfs 290 (292)
T KOG1681|consen 255 ESLNYVATWNMSMLLSDDLVKAVMAQM-EKLKTVTFS 290 (292)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCCcc
Confidence 999999999999999999999999999 563344464
No 80
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=1e-42 Score=379.29 Aligned_cols=284 Identities=20% Similarity=0.229 Sum_probs=224.0
Q ss_pred eEEEEecCcEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCc
Q 013607 68 VKGNVHPNGVAVITLDRP-KALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (439)
Q Consensus 68 i~~~~~~~~V~~Itlnrp-~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 146 (439)
+.++..+++|++|||||| ++.|+||.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++.... ....
T Consensus 7 ~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~----~~~~ 82 (708)
T PRK11154 7 FTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACK----TAQE 82 (708)
T ss_pred EEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccC----CHHH
Confidence 455544689999999999 68999999999999999999999999999999997668999999999875311 1111
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCC--eeEeccccccCCCCChhHHHHHhhCCCch
Q 013607 147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK--TLLAMPENGIGLFPDVGFSYIAAKGPGGG 224 (439)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~--a~f~~pe~~lGl~P~~G~~~~l~r~~G~~ 224 (439)
...+......++.+|.++||||||+|||+|+|||++|+++|||||++++ ++|++||+++|++|++|++++|++++|..
T Consensus 83 ~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~ 162 (708)
T PRK11154 83 AEALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVS 162 (708)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHH
Confidence 2234444556788999999999999999999999999999999999986 48999999999999999999999999998
Q ss_pred HHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHh
Q 013607 225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITS 304 (439)
Q Consensus 225 ~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~ 304 (439)
++++|++||+.++ |+||+++||||+++|++++.+.+.+++...+...+..... . .
T Consensus 163 -~A~~llltG~~i~-a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~~~~~~~--------------------~---~ 217 (708)
T PRK11154 163 -TALDMILTGKQLR-AKQALKLGLVDDVVPHSILLEVAVELAKKGKPARRPLPVR--------------------E---R 217 (708)
T ss_pred -HHHHHHHhCCcCC-HHHHHHCCCCcEecChHHHHHHHHHHHHhcCCccCcCCch--------------------h---h
Confidence 9999999999999 9999999999999999998887788765411000000000 0 0
Q ss_pred hcCCC-CCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHH
Q 013607 305 CFSSE-KSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV 383 (439)
Q Consensus 305 ~F~~~-~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~ 383 (439)
..+.+ .....++ +.+++.+.+-.+..-.++..+|++++.+. ..++.+++..|.+.
T Consensus 218 ~~~~~p~~~~~~~---------------~~~~~~~~~~~~g~~~A~~~~k~~i~~~~---------~~~~~~~l~~E~~~ 273 (708)
T PRK11154 218 LLEGNPLGRALLF---------------KQARKKTLAKTQGNYPAPERILDVVRTGL---------EKGMSSGYEAEARA 273 (708)
T ss_pred hcccCchhHHHHH---------------HHHHHHHHHhcccCChHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Confidence 00000 0001111 22232222334444579999999999876 57899999999999
Q ss_pred HHhhCCCChHHHHHHHHHhCC
Q 013607 384 ALRSSLRSDFAEGVRAVLVDK 404 (439)
Q Consensus 384 ~~~~~~~~d~~egv~a~l~~K 404 (439)
+..++.++|+++|+++|+.++
T Consensus 274 ~~~~~~s~~~~~~~~aF~~~~ 294 (708)
T PRK11154 274 FGELAMTPESAALRSIFFATT 294 (708)
T ss_pred HHHHhCCHHHHHHHHHHHHHH
Confidence 999999999999999999654
No 81
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.1e-43 Score=334.21 Aligned_cols=224 Identities=22% Similarity=0.206 Sum_probs=192.7
Q ss_pred cceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCC
Q 013607 66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP 145 (439)
Q Consensus 66 ~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 145 (439)
+.|.++. +++|++||||||+ .|++|.+|+.+|.++++.++ +++++|||+|.| ++||+|+|++++... ..
T Consensus 3 ~~i~~~~-~~~v~~itln~~~-~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g-~~F~~G~Dl~~~~~~------~~ 71 (229)
T PRK06213 3 ELVSYTL-EDGVATITLDDGK-VNALSPAMIDALNAALDQAE--DDRAVVVITGQP-GIFSGGFDLKVMTSG------AQ 71 (229)
T ss_pred ceEEEEe-cCCEEEEEeCCCC-CCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCC-CceEcCcCHHHHhcc------hH
Confidence 3577774 7899999999985 69999999999999999988 457999999998 899999999987531 12
Q ss_pred chHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCC-eeEeccccccCCCCChhHHHHHhhCCCch
Q 013607 146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFPDVGFSYIAAKGPGGG 224 (439)
Q Consensus 146 ~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~-a~f~~pe~~lGl~P~~G~~~~l~r~~G~~ 224 (439)
....++.....++.++.++||||||+|||+|+|||++|+++|||||++++ ++|++||+++|++|+.|+..++++.+|..
T Consensus 72 ~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~ 151 (229)
T PRK06213 72 AAIALLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPS 151 (229)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHH
Confidence 22345556667888999999999999999999999999999999999999 99999999999998888888899999997
Q ss_pred HHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHh
Q 013607 225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITS 304 (439)
Q Consensus 225 ~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~ 304 (439)
.++++++||+.++ |+||+++||||+++|++++.+.+.
T Consensus 152 -~a~~lll~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------- 188 (229)
T PRK06213 152 -AFQRAVINAEMFD-PEEAVAAGFLDEVVPPEQLLARAQ----------------------------------------- 188 (229)
T ss_pred -HHHHHHHcCcccC-HHHHHHCCCceeccChHHHHHHHH-----------------------------------------
Confidence 9999999999999 999999999999999877654222
Q ss_pred hcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHH
Q 013607 305 CFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV 383 (439)
Q Consensus 305 ~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~ 383 (439)
+||+ ++++.||.+++.+|++++... ...+.++++.|.+.
T Consensus 189 ---------------------------~~a~----~la~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~~~~~ 227 (229)
T PRK06213 189 ---------------------------AAAR----ELAGLNMGAHAATKLKVRAAA---------LEAIRAAIEGDAAE 227 (229)
T ss_pred ---------------------------HHHH----HHhcCCHHHHHHHHHHHHHHH---------HHHHHhchhhhhhh
Confidence 3444 789999999999999999875 45677887777664
No 82
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=5.9e-42 Score=372.53 Aligned_cols=279 Identities=17% Similarity=0.224 Sum_probs=222.1
Q ss_pred EEecCcEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE-EeCCCCCcccCCcchhhhHhhhcCCCCCchH
Q 013607 71 NVHPNGVAVITLDRP-KALNAMNLDMDIKYKSFLDEWESDPRVKCVLI-EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVP 148 (439)
Q Consensus 71 ~~~~~~V~~Itlnrp-~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVl-tg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 148 (439)
+..+++|++|||||| ++.|+||.+|+.+|.++++.++.|+++|+||| +|.| ++||+|+|++++.... ......
T Consensus 5 ~~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g-~~FcaG~Dl~~~~~~~----~~~~~~ 79 (699)
T TIGR02440 5 TVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKP-DNFIAGADISMLAACQ----TAGEAK 79 (699)
T ss_pred EEcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CceeeccCchhhhccC----ChhHHH
Confidence 334789999999999 68999999999999999999999999999997 5665 8999999999875311 111223
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCC--eeEeccccccCCCCChhHHHHHhhCCCchHH
Q 013607 149 KVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK--TLLAMPENGIGLFPDVGFSYIAAKGPGGGSV 226 (439)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~--a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~ 226 (439)
.+......++..|.++||||||+|||+|+|||++|+++||||||+++ ++|++||+++|++|++|++++|++++|.. +
T Consensus 80 ~~~~~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~-~ 158 (699)
T TIGR02440 80 ALAQQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVS-T 158 (699)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHH-H
Confidence 34455567888999999999999999999999999999999999986 79999999999999999999999999998 9
Q ss_pred HHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccC-CCCcHHHHHHHHHhccCCCCCCchhhcchhHHHhh
Q 013607 227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTF-SEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSC 305 (439)
Q Consensus 227 a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~ 305 (439)
+++|++||+.++ |++|+++||||+++|++++.+.+.+++.... ...+. ... .+.
T Consensus 159 A~~llltG~~~~-a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~~~~~~~~-~~~-----------------------~~~ 213 (699)
T TIGR02440 159 ALDMILTGKQLR-AKQALKLGLVDDVVPQSILLDTAVEMALKGKPIRKPL-SLQ-----------------------ERL 213 (699)
T ss_pred HHHHHHcCCcCC-HHHHHhCCCCcEecChhHHHHHHHHHHHhCCCCCCCc-cch-----------------------hhh
Confidence 999999999999 9999999999999999999888888765300 00000 000 000
Q ss_pred cCCC-CCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHH
Q 013607 306 FSSE-KSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVA 384 (439)
Q Consensus 306 F~~~-~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~ 384 (439)
.... .....++ +++.+.+++-....-.+...+|+.++.+. ..++.++++.|.+.+
T Consensus 214 ~~~~~~a~~~~~---------------~~~~k~~~~~~~~~~~a~~~~~~~i~~~~---------~~~~~~~l~~E~~~~ 269 (699)
T TIGR02440 214 LEGTPLGRALLF---------------DQAAKKTAKKTQGNYPAAERILDVVRQGL---------AQGMQKGLDAEARAF 269 (699)
T ss_pred cccCchhHHHHH---------------HHHHHHHHHhcccCChhHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Confidence 0000 0111111 22233333344556788999999999887 678999999999999
Q ss_pred HhhCCCChHHHHHHHHHhCC
Q 013607 385 LRSSLRSDFAEGVRAVLVDK 404 (439)
Q Consensus 385 ~~~~~~~d~~egv~a~l~~K 404 (439)
..++.++|+++++++|+.++
T Consensus 270 ~~~~~s~~~~~~~~~f~~~~ 289 (699)
T TIGR02440 270 GELVMTPESAALRSIFFATT 289 (699)
T ss_pred HHhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999754
No 83
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=5.2e-42 Score=373.08 Aligned_cols=291 Identities=18% Similarity=0.215 Sum_probs=224.0
Q ss_pred ceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCc
Q 013607 67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (439)
Q Consensus 67 ~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 146 (439)
.+.++..+++|++|+||||++.|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++..... .....
T Consensus 7 ~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~--~~~~~ 83 (714)
T TIGR02437 7 TIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGK-DAFIVGADITEFLGLFA--LPDAE 83 (714)
T ss_pred eEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CccccCcCHHHHhhccc--CCHHH
Confidence 5677655789999999999999999999999999999999999999999999998 79999999998854210 11112
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHH
Q 013607 147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV 226 (439)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~ 226 (439)
...+......++..|..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++|.. +
T Consensus 84 ~~~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~-~ 162 (714)
T TIGR02437 84 LIQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGAD-N 162 (714)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHH-H
Confidence 233444556788899999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHhhc
Q 013607 227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCF 306 (439)
Q Consensus 227 a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F 306 (439)
+++|++||+.++ |++|+++||||+++|.+++.+.+.+++..-.... +........+...+ ....+.++|
T Consensus 163 A~~llltG~~~~-A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~--------~~~~~~~~~~~~~~--~~~~~~~~~ 231 (714)
T TIGR02437 163 ALEWIASGKENR-AEDALKVGAVDAVVTADKLGAAALQLLKDAINGK--------LDWKAKRQPKLEPL--KLSKIEAMM 231 (714)
T ss_pred HHHHHHcCCcCC-HHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcC--------CcccccCCCCcccc--cccchHHHH
Confidence 999999999999 9999999999999999999887777764310000 00000000000000 011123332
Q ss_pred CCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHHHh
Q 013607 307 SSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALR 386 (439)
Q Consensus 307 ~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~ 386 (439)
.. +.+++.+.+.......+-..+.+.++.+. ..+++++++.|.+.+..
T Consensus 232 ~~-----------------------~~~~~~~~~~~~~~~pap~~~~~~v~~~~---------~~~~~~gl~~E~~~f~~ 279 (714)
T TIGR02437 232 SF-----------------------TTAKGMVAQVAGPHYPAPMTAVKTIEKAA---------RFGRDKALEIEAKGFVK 279 (714)
T ss_pred HH-----------------------HHHHHHHHHhhcCCCCCHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHH
Confidence 21 22233222233343334444556777776 56799999999999999
Q ss_pred hCCCChHHHHHHHHHhCC
Q 013607 387 SSLRSDFAEGVRAVLVDK 404 (439)
Q Consensus 387 ~~~~~d~~egv~a~l~~K 404 (439)
++.+++.+..++.|+.++
T Consensus 280 l~~s~~a~~l~~~ff~~r 297 (714)
T TIGR02437 280 LAKTSEAKALIGLFLNDQ 297 (714)
T ss_pred HhCCHHHHHHHHHHhhhH
Confidence 999999999999999654
No 84
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=100.00 E-value=7.1e-43 Score=314.72 Aligned_cols=261 Identities=23% Similarity=0.290 Sum_probs=215.2
Q ss_pred CcccceEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC--CCCCcccCCcchhhhHhhhc
Q 013607 63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS--GPRAFCAGMDIKGVVAEIQK 140 (439)
Q Consensus 63 ~~~~~i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~--g~~~F~aG~Dl~~~~~~~~~ 140 (439)
..++.|+|+...++|+.|+||||+++||+.+..+.||.+++..++.|++|.+|||||. |+++||+|+|-+--.... .
T Consensus 15 ~~y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~-g 93 (282)
T COG0447 15 EGYEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSG-G 93 (282)
T ss_pred CCcceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCC-C
Confidence 3588899997448999999999999999999999999999999999999999999975 789999999987533210 0
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhC
Q 013607 141 DRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG 220 (439)
Q Consensus 141 ~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~ 220 (439)
-...+... .-...++.+.|+.+||||||.|+|+|+|||-.|-+.||+.||+++|+|++...++|-+-++.++-.|.|+
T Consensus 94 Y~~d~~~~--rLnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~ 171 (282)
T COG0447 94 YVDDDGIP--RLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARI 171 (282)
T ss_pred ccCCccCc--ccchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHH
Confidence 00111111 1122356678999999999999999999999999999999999999999999999999777778889999
Q ss_pred CCchHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchh
Q 013607 221 PGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLP 300 (439)
Q Consensus 221 ~G~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 300 (439)
+|.. +|+|+.+.++.++ |+||+++|+||.|||.++|++ +.
T Consensus 172 VGqK-kArEIwfLcR~Y~-A~eal~MGlVN~Vvp~~~LE~--e~------------------------------------ 211 (282)
T COG0447 172 VGQK-KAREIWFLCRQYD-AEEALDMGLVNTVVPHADLEK--ET------------------------------------ 211 (282)
T ss_pred hhhh-hhHHhhhhhhhcc-HHHHHhcCceeeeccHHHHHH--HH------------------------------------
Confidence 9998 9999999999999 999999999999999999875 22
Q ss_pred HHHhhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHH
Q 013607 301 QITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYE 380 (439)
Q Consensus 301 ~i~~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e 380 (439)
.+||+ .|.++||.+++..|.+++.-. .++...-+..
T Consensus 212 ------------------------------v~W~~----E~l~kSP~AlR~LK~Afnad~----------DGlaG~q~~a 247 (282)
T COG0447 212 ------------------------------VQWAR----EMLAKSPTALRMLKAAFNADC----------DGLAGLQELA 247 (282)
T ss_pred ------------------------------HHHHH----HHHhcChHHHHHHHHHhcCCC----------chhhHHHHhc
Confidence 27887 789999999999999998533 3343332333
Q ss_pred HHHHHhhCCCChHHHHHHHHHhCCCCCCCCCC
Q 013607 381 YRVALRSSLRSDFAEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 381 ~~~~~~~~~~~d~~egv~a~l~~K~r~P~w~~ 412 (439)
-+...-...++|.+||-.||+ +| |+|.|..
T Consensus 248 g~at~L~YmTdEa~EGr~AF~-eK-R~Pdf~~ 277 (282)
T COG0447 248 GNATLLYYMTDEAQEGRDAFL-EK-RKPDFSK 277 (282)
T ss_pred ccceEEEEechhhhhhHHHHh-hc-cCCChHh
Confidence 333344557999999999999 78 8999863
No 85
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=1.5e-40 Score=362.34 Aligned_cols=296 Identities=19% Similarity=0.206 Sum_probs=218.4
Q ss_pred cCcccceEEEEecCcEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEE-EEEeCCCCCcccCCcchhhhHhhh
Q 013607 62 AGAEEFVKGNVHPNGVAVITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCV-LIEGSGPRAFCAGMDIKGVVAEIQ 139 (439)
Q Consensus 62 ~~~~~~i~~~~~~~~V~~Itlnrp~-~~Nal~~~m~~eL~~~l~~~~~d~~vr~v-Vltg~g~~~F~aG~Dl~~~~~~~~ 139 (439)
.+.++.+.++. +++|++||||||+ +.|+||.+|+.+|.++++.++.|+++|+| |++|.| ++||+|+|++++...
T Consensus 9 ~~~~~~~~~~~-~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g-~~F~aG~Dl~~~~~~-- 84 (737)
T TIGR02441 9 LMARTHRHYEV-KGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKP-GSFVAGADIQMIAAC-- 84 (737)
T ss_pred CCCCCeEEEEE-ECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCC-CcceeCcCHHHHhcc--
Confidence 45677888885 7999999999998 58999999999999999999999999965 568987 899999999988531
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCC--eeEeccccccCCCCChhHHHHH
Q 013607 140 KDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK--TLLAMPENGIGLFPDVGFSYIA 217 (439)
Q Consensus 140 ~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~--a~f~~pe~~lGl~P~~G~~~~l 217 (439)
........+......++.+|.++||||||+|||+|+|||++|+++||||||+++ ++|++||+++|++|++|++++|
T Consensus 85 --~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rL 162 (737)
T TIGR02441 85 --KTAQEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRL 162 (737)
T ss_pred --CChHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhH
Confidence 111223344455567888999999999999999999999999999999999987 5899999999999999999999
Q ss_pred hhCCCchHHHHHHhhcCCCCCcHHHHHHcCCcccccCC-------------CCHHHHHHHHHhccCCCCcHHHHHHHHHh
Q 013607 218 AKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS-------------GNLGSLKEALLAVTFSEDPHQDIVALLAK 284 (439)
Q Consensus 218 ~r~~G~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~-------------~~l~~~~~~la~~~~~~~~~~~~~~~l~~ 284 (439)
+|++|.. ++++|++||++++ |++|+++||||+|||+ +++.+.+.+++..-.... ...+.
T Consensus 163 prliG~~-~A~~l~ltG~~i~-a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~------~~~~~ 234 (737)
T TIGR02441 163 PKLTGVP-AALDMMLTGKKIR-ADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGK------LSINR 234 (737)
T ss_pred HHhhCHH-HHHHHHHcCCcCC-HHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhccc------CCccc
Confidence 9999998 9999999999999 9999999999999986 223343333332100000 00000
Q ss_pred ccCCCCCCchhhcchhHHHhhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcC
Q 013607 285 YSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHG 364 (439)
Q Consensus 285 ~~~~~~~~~~~~~~~~~i~~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~ 364 (439)
+...+++.... -.+.+.....++ +.+++.+.+-.+....+...+.+.+..+.
T Consensus 235 ~~~~~~~~~~~---------~~~~~~~~~~~~---------------~~~~~~~~~~~~g~~~Ap~~~l~~v~~~~---- 286 (737)
T TIGR02441 235 DKGLVHKITQY---------VMTNPFVRQQVY---------------KTAEDKVMKQTKGLYPAPLKILDVVRTGY---- 286 (737)
T ss_pred cccccCccchh---------hcccchhHHHHH---------------HHHHHHHHHhccCCCccHHHHHHHHHHHh----
Confidence 00000000000 000000011111 22222222223343456666677888776
Q ss_pred CCccccCCHHHHHHHHHHHHHhhCCCChHHHHHHHHHhCC
Q 013607 365 KTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDK 404 (439)
Q Consensus 365 ~~~~~~~~l~~~l~~e~~~~~~~~~~~d~~egv~a~l~~K 404 (439)
..+++++++.|.+.+..++.+++.+.-+..|+.++
T Consensus 287 -----~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~~ 321 (737)
T TIGR02441 287 -----DQGPDAGYEAESKAFGELSMTFESKALIGLFHGQT 321 (737)
T ss_pred -----cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999653
No 86
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=2.8e-40 Score=316.36 Aligned_cols=185 Identities=15% Similarity=0.171 Sum_probs=154.8
Q ss_pred eEEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEEeCCCCCcccCCcchhhhHhhhcCCCCCc
Q 013607 68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVK-CVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL 146 (439)
Q Consensus 68 i~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr-~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 146 (439)
++++. +++|++|+||||++ |+|+.+|+.+|.++++.++.|++++ +||++|.| ++||+|+|++++... ......
T Consensus 2 ~~~~~-~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g-~~FsaG~Dl~~~~~~---~~~~~~ 75 (239)
T PLN02267 2 CTLEK-RGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEG-KFFSNGFDLAWAQAA---GSAPSR 75 (239)
T ss_pred ceeEe-cCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCC-CceeCCcCHHHHhcc---ccCHHH
Confidence 45664 78999999999986 9999999999999999999999875 77778886 799999999986421 011111
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEc-CCeeEeccccccCCCCChhHHHHHhhCCCchH
Q 013607 147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT-EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS 225 (439)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~-e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~ 225 (439)
...+...+..++..+.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|+++++.++++++|..
T Consensus 76 ~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~- 154 (239)
T PLN02267 76 LHLMVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSP- 154 (239)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChH-
Confidence 12234455667888999999999999999999999999999999998 5689999999999974444588999999987
Q ss_pred HH-HHHhhcCCCCCcHHHHHHcCCcccccCC-CCHHH
Q 013607 226 VG-AYLGMTGKRISTPSDALFAGLGTDYVPS-GNLGS 260 (439)
Q Consensus 226 ~a-~~l~ltG~~i~~A~eA~~~GLv~~vv~~-~~l~~ 260 (439)
++ +++++||+.++ |+||+++||||+++|+ +++.+
T Consensus 155 ~a~~~llltG~~~~-a~eA~~~Glv~~vv~~~~~l~~ 190 (239)
T PLN02267 155 AARRDVLLRAAKLT-AEEAVEMGIVDSAHDSAEETVE 190 (239)
T ss_pred HHHHHHHHcCCcCC-HHHHHHCCCcceecCCHHHHHH
Confidence 88 69999999999 9999999999999985 45554
No 87
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=4.7e-39 Score=298.84 Aligned_cols=257 Identities=21% Similarity=0.283 Sum_probs=223.0
Q ss_pred CcccceEEEEecCcEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcC
Q 013607 63 GAEEFVKGNVHPNGVAVITLD-RPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD 141 (439)
Q Consensus 63 ~~~~~i~~~~~~~~V~~Itln-rp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~ 141 (439)
+.+..+.++ ++||+.+|.+| ||++.|+|+.+|+.++..+|+....|+++..++++|.| ++||+|.|++.+......+
T Consensus 4 ~~~~~~vv~-~~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G-~~f~sG~Df~~~~~~~~~d 81 (266)
T KOG0016|consen 4 MRYREIVVT-RENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNG-SYFCSGLDFSPFAKALDDD 81 (266)
T ss_pred ccccceEEE-ecCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCc-cEEeeccccchhhhcCCCc
Confidence 345667776 48999999999 99999999999999999999999999999999999998 8999999999987644222
Q ss_pred CCC--CchHHHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhh
Q 013607 142 RNT--PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAK 219 (439)
Q Consensus 142 ~~~--~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r 219 (439)
... ...-.+...+..+...+..+|||+||.|||+|+|.|+.+...||+++|+|++.|..|++++|..|++|+++.+|+
T Consensus 82 ~~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~ 161 (266)
T KOG0016|consen 82 ANEESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPK 161 (266)
T ss_pred ccccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehH
Confidence 111 111122233334667889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcch
Q 013607 220 GPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLL 299 (439)
Q Consensus 220 ~~G~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 299 (439)
++|.. .|.+++|.|++++ |+||++.|||+++++.+++.+
T Consensus 162 imG~~-~A~E~ll~~~klt-A~Ea~~~glVskif~~~tf~~--------------------------------------- 200 (266)
T KOG0016|consen 162 IMGSA-SANEMLLFGEKLT-AQEACEKGLVSKIFPAETFNE--------------------------------------- 200 (266)
T ss_pred hhchh-hHHHHHHhCCccc-HHHHHhcCchhhhcChHHHHH---------------------------------------
Confidence 99997 9999999999999 999999999999999877654
Q ss_pred hHHHhhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHH
Q 013607 300 PQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKY 379 (439)
Q Consensus 300 ~~i~~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~ 379 (439)
-+.+.++++++.||.+++..|++++... ...+..+.+.
T Consensus 201 ---------------------------------~v~~~ikq~s~l~p~sl~~~K~L~rs~~---------k~~l~~an~~ 238 (266)
T KOG0016|consen 201 ---------------------------------EVLKKIKQYSKLSPESLLGMKKLLRSNI---------KEELIKANEE 238 (266)
T ss_pred ---------------------------------HHHHHHHHHhcCCHHHHHHHHHHHHHHH---------HHHHHHhhHH
Confidence 2222345788899999999999999877 5679999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHhCC
Q 013607 380 EYRVALRSSLRSDFAEGVRAVLVDK 404 (439)
Q Consensus 380 e~~~~~~~~~~~d~~egv~a~l~~K 404 (439)
|.......|.++|+.+.+.+|+..+
T Consensus 239 E~~~l~~~W~s~e~~~~~~~~~~~~ 263 (266)
T KOG0016|consen 239 ECNVLLKQWVSAECLARFKQYLSKK 263 (266)
T ss_pred HHHHHHhhccChHHHHHHHHHhccc
Confidence 9999999999999999999999543
No 88
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=2.2e-38 Score=283.02 Aligned_cols=248 Identities=24% Similarity=0.383 Sum_probs=216.8
Q ss_pred cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHH
Q 013607 74 PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTA 153 (439)
Q Consensus 74 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 153 (439)
+++|-.|+||+|+++|.|+.+|+.+|.+.|....++.++|+|||+..| +.||+|.||+++... ...+.....|..
T Consensus 39 ~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~G-kifSaGH~LKELt~e----~g~d~haevFqt 113 (287)
T KOG1682|consen 39 HNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQG-KIFSAGHNLKELTNE----PGSDIHAEVFQT 113 (287)
T ss_pred ccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCC-ccccccccHHHhhcC----ccchHHHHHHHH
Confidence 689999999999999999999999999999999888999999999998 899999999999762 223444556777
Q ss_pred HHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHHHHHHhhc
Q 013607 154 EYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMT 233 (439)
Q Consensus 154 ~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~a~~l~lt 233 (439)
.-+++..|+++|.||||-|||+|..+||.|...||++|++++++|..|...+|++...-|. -|.|.+... .+.||++|
T Consensus 114 c~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGv-AlaRavpRk-va~~ML~T 191 (287)
T KOG1682|consen 114 CTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGV-ALARAVPRK-VAAYMLMT 191 (287)
T ss_pred HHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcch-hHhhhcchh-HHHHHHHh
Confidence 7788999999999999999999999999999999999999999999999999996322221 378888887 99999999
Q ss_pred CCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhccCCCCcHHHHHHHHHhccCCCCCCchhhcchhHHHhhcCCCCCHH
Q 013607 234 GKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVR 313 (439)
Q Consensus 234 G~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~F~~~~sv~ 313 (439)
|.+|+ ++||+..||++++||.++++..++.++
T Consensus 192 g~Pi~-~eeAl~sGlvskvVp~~el~~e~~~i~----------------------------------------------- 223 (287)
T KOG1682|consen 192 GLPIT-GEEALISGLVSKVVPAEELDKEIEEIT----------------------------------------------- 223 (287)
T ss_pred CCCCc-hHHHHHhhhhhhcCCHHHHHHHHHHHH-----------------------------------------------
Confidence 99999 999999999999999998875433332
Q ss_pred HHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHHHhhCCCChH
Q 013607 314 QIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDF 393 (439)
Q Consensus 314 ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~d~ 393 (439)
.+|...|...+.+.|+.+.... ..+-.+++....+.....+.-.|.
T Consensus 224 -------------------------~~i~~~srav~slgk~f~y~q~---------~ms~~ea~~~~~~~m~~n~ql~d~ 269 (287)
T KOG1682|consen 224 -------------------------NAIKAKSRAVISLGKEFYYKQL---------AMSQAEAFSAAQEKMCENFQLGDT 269 (287)
T ss_pred -------------------------HHHhhhHHHHHHHHHHHHHHHH---------HHhHHHHHHHHHHHHhhcccccch
Confidence 2577788888888999888776 567888999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCC
Q 013607 394 AEGVRAVLVDKDQNPKWNP 412 (439)
Q Consensus 394 ~egv~a~l~~K~r~P~w~~ 412 (439)
+||+.+|+ +| |+|+|+|
T Consensus 270 kegiasf~-~k-rp~~~~h 286 (287)
T KOG1682|consen 270 KEGIASFF-EK-RPPNWKH 286 (287)
T ss_pred HHHHHHHh-cc-CCCCcCC
Confidence 99999999 78 8999987
No 89
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=4e-38 Score=292.03 Aligned_cols=192 Identities=32% Similarity=0.441 Sum_probs=173.9
Q ss_pred EEEEecCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchH
Q 013607 69 KGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVP 148 (439)
Q Consensus 69 ~~~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 148 (439)
.++. +++|++|+||+|++.|++|.+|+++|.++++.++.|+++++|||||.| +.||+|+|++++..... ..+...
T Consensus 2 ~~~~-~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~-~~Fs~G~dl~~~~~~~~---~~~~~~ 76 (195)
T cd06558 2 LVER-DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAG-KAFCAGADLKELAALSD---AGEEAR 76 (195)
T ss_pred EEEE-ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceEeCcCHHHHhcccc---cchhHH
Confidence 4553 689999999999999999999999999999999999999999999985 89999999999876321 111245
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHHHH
Q 013607 149 KVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGA 228 (439)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~a~ 228 (439)
.+....+.++..+..++||+||+|||+|+|+|++++++||+||+++++.|++||+++|++|++|++++|++++|.. .+.
T Consensus 77 ~~~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~-~a~ 155 (195)
T cd06558 77 AFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPA-RAR 155 (195)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHH-HHH
Confidence 6778888899999999999999999999999999999999999999999999999999999999999999999987 999
Q ss_pred HHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHh
Q 013607 229 YLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLA 267 (439)
Q Consensus 229 ~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~ 267 (439)
+++++|+.++ |+||+++||++++++.+++.+.+.++++
T Consensus 156 ~~~l~g~~~~-a~ea~~~Glv~~~~~~~~l~~~a~~~a~ 193 (195)
T cd06558 156 ELLLTGRRIS-AEEALELGLVDEVVPDEELLAAALELAR 193 (195)
T ss_pred HHHHcCCccC-HHHHHHcCCCCeecChhHHHHHHHHHHh
Confidence 9999999999 9999999999999999888877666653
No 90
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=1.5e-37 Score=326.07 Aligned_cols=201 Identities=15% Similarity=0.175 Sum_probs=168.5
Q ss_pred CcccceEEEEecCcEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEeCCCCCcccCCcc
Q 013607 63 GAEEFVKGNVHPNGVAVITLDRPK----------ALNAMNLDMDIKYKSFLDEWE-SDPRVKCVLIEGSGPRAFCAGMDI 131 (439)
Q Consensus 63 ~~~~~i~~~~~~~~V~~Itlnrp~----------~~Nal~~~m~~eL~~~l~~~~-~d~~vr~vVltg~g~~~F~aG~Dl 131 (439)
..++++.++. +++|++|+||||+ ++|+||.+|+.+|.++++.++ .|+++|+|||||.|+++||+|+|+
T Consensus 8 ~~~~~v~~~~-~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL 86 (546)
T TIGR03222 8 SQYRHWKLTF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANI 86 (546)
T ss_pred CCCceEEEEe-eCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCH
Confidence 4567888885 7899999999976 899999999999999999999 789999999999755899999999
Q ss_pred hhhhHhhhcCCCCCchHHHHHH-HHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCC--eeEeccccc-cCC
Q 013607 132 KGVVAEIQKDRNTPLVPKVFTA-EYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK--TLLAMPENG-IGL 207 (439)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~--a~f~~pe~~-lGl 207 (439)
+++.... .........+... ...+...+..+||||||+|||+|+|||++|+++||+||++++ ++|++||++ +|+
T Consensus 87 ~~~~~~~--~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl 164 (546)
T TIGR03222 87 FMLGLST--HAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGV 164 (546)
T ss_pred HHHhccc--cchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCc
Confidence 9874311 0000111111111 123445678899999999999999999999999999999986 799999997 999
Q ss_pred CCChhHHHHHh--hCCCchHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhc
Q 013607 208 FPDVGFSYIAA--KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAV 268 (439)
Q Consensus 208 ~P~~G~~~~l~--r~~G~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~ 268 (439)
+|++|++.+++ +.+|.. ++++|++||+.++ |+||++|||||++||++++.+.+.++++.
T Consensus 165 ~P~~gg~~~l~~~~~vg~~-~A~~llltG~~i~-A~eA~~~GLV~~vv~~~~l~~~a~~lA~~ 225 (546)
T TIGR03222 165 LPGTGGLTRVTDKRRVRRD-HADIFCTIEEGVR-GKRAKEWRLVDEVVKPSQFDAAIAERAAE 225 (546)
T ss_pred CCccchhhhccccchhCHH-HHHHHHHcCCCcc-HHHHHHcCCceEEeChHHHHHHHHHHHHH
Confidence 99999999997 689997 9999999999999 99999999999999999888777666544
No 91
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=1e-36 Score=320.76 Aligned_cols=201 Identities=16% Similarity=0.193 Sum_probs=168.1
Q ss_pred CcccceEEEEecCcEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEeCCCCCcccCCcc
Q 013607 63 GAEEFVKGNVHPNGVAVITLDRP-------K---ALNAMNLDMDIKYKSFLDEWE-SDPRVKCVLIEGSGPRAFCAGMDI 131 (439)
Q Consensus 63 ~~~~~i~~~~~~~~V~~Itlnrp-------~---~~Nal~~~m~~eL~~~l~~~~-~d~~vr~vVltg~g~~~F~aG~Dl 131 (439)
++++++.++. +++|++|+|||| + +.|+|+.+|+.+|.++++.++ .|+++|+|||||.|+++||+|+|+
T Consensus 12 ~~~~~~~~e~-~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL 90 (550)
T PRK08184 12 SQYRHWKLSF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANI 90 (550)
T ss_pred CCCceEEEEe-eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCH
Confidence 5678899985 799999999965 4 899999999999999999999 789999999999866899999999
Q ss_pred hhhhHhhhcCCCCCchHHHHHHHH-HHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCC--eeEeccccc-cCC
Q 013607 132 KGVVAEIQKDRNTPLVPKVFTAEY-SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK--TLLAMPENG-IGL 207 (439)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~--a~f~~pe~~-lGl 207 (439)
+++.... .........+....+ .+...+..+||||||+|||+|+|||++|+++|||||++++ ++|++||++ +|+
T Consensus 91 ~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl 168 (550)
T PRK08184 91 FMLGGSS--HAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGV 168 (550)
T ss_pred HhHhccc--cchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhcccc
Confidence 9874311 000000111111111 2445678899999999999999999999999999999987 899999997 999
Q ss_pred CCChhHHHHHh--hCCCchHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHHHHHHhc
Q 013607 208 FPDVGFSYIAA--KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAV 268 (439)
Q Consensus 208 ~P~~G~~~~l~--r~~G~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~la~~ 268 (439)
+|++|++++++ +++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.+++..
T Consensus 169 ~P~~gg~~rl~~~~~vg~~-~A~~llltG~~i~-AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ 229 (550)
T PRK08184 169 LPGTGGLTRVTDKRKVRRD-LADIFCTIEEGVR-GKRAVDWRLVDEVVKPSKFDAKVAERAAE 229 (550)
T ss_pred CCCcchHHHhhhhhhcCHH-HHHHHHHhCCccc-HHHHHHcCCccEeeCHHHHHHHHHHHHHH
Confidence 99999999998 779997 9999999999999 99999999999999998888766666543
No 92
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=99.92 E-value=7.2e-25 Score=186.77 Aligned_cols=117 Identities=44% Similarity=0.760 Sum_probs=101.2
Q ss_pred hhcchhHHHhhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHH
Q 013607 295 LKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLS 374 (439)
Q Consensus 295 ~~~~~~~i~~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~ 374 (439)
+..+.+.|++||+.+ |++||+++|++.. .+||.++++.|.++||+|+++|.++++++. ..++.
T Consensus 2 L~~~~~~I~~~F~~~-s~~eI~~~L~~~~-------~~~a~~~~~~l~~~SP~Sl~vt~~~l~~~~---------~~sl~ 64 (118)
T PF13766_consen 2 LAEHLEAIDRCFSAD-SVEEIIEALEADG-------DEWAQKTLETLRSGSPLSLKVTFEQLRRGR---------NLSLA 64 (118)
T ss_dssp CHHCHHHHHHHTTSS-SHHHHHHHHHHHS--------HHHHHHHHHHCCS-HHHHHHHHHHHHCCT---------TS-HH
T ss_pred hHHHHHHHHHHhCCC-CHHHHHHHHHccC-------cHHHHHHHHHHHHCCHHHHHHHHHHHHHhh---------hCCHH
Confidence 556788999999988 9999999999965 599999999999999999999999999987 68999
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHhCCCCCCCCCCCCcCCCCHHHHHhccc
Q 013607 375 GVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFE 428 (439)
Q Consensus 375 ~~l~~e~~~~~~~~~~~d~~egv~a~l~~K~r~P~w~~~~~~~v~~~~v~~~f~ 428 (439)
+|+++|+++..+++..+||.|||||.|+||++.|+|+|++++||++++|++||+
T Consensus 65 e~l~~E~~~a~~~~~~~DF~EGVRA~LIDKd~~P~W~p~~l~~V~~~~V~~~f~ 118 (118)
T PF13766_consen 65 ECLRMEYRLASRCMRHPDFAEGVRALLIDKDKNPKWSPASLEDVSDEDVDSFFE 118 (118)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHTTS-------SSSSCCCS-HHHHHHHCS
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCCCCCChHHCCHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999995
No 93
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.78 E-value=8.7e-19 Score=160.43 Aligned_cols=142 Identities=15% Similarity=0.015 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEEC
Q 013607 94 DMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMD 173 (439)
Q Consensus 94 ~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavn 173 (439)
-.+.+|.++++.+++|+++++|||++ +|.|+|+.... ...+.+..+..++|||||+||
T Consensus 22 ~~~~~l~~~l~~a~~d~~v~~vvl~~-----~~~gg~~~~~~-----------------~~~~~i~~~~~~~kpVia~v~ 79 (177)
T cd07014 22 VSGDTTAAQIRDARLDPKVKAIVLRV-----NSPGGSVTASE-----------------VIRAELAAARAAGKPVVASGG 79 (177)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEe-----eCCCcCHHHHH-----------------HHHHHHHHHHhCCCCEEEEEC
Confidence 35789999999999999999999986 58888876421 123456677889999999999
Q ss_pred CcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHH--------HHhhCCC--chHHHHHHhhcCCCCCcHHHH
Q 013607 174 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY--------IAAKGPG--GGSVGAYLGMTGKRISTPSDA 243 (439)
Q Consensus 174 G~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~--------~l~r~~G--~~~~a~~l~ltG~~i~~A~eA 243 (439)
|.|.|||+.|+++||++++++.+.|+++.+..+..+...... .+++..| .. ..++++..|..++ |++|
T Consensus 80 G~a~g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~-~~~~~l~~g~~~~-a~~A 157 (177)
T cd07014 80 GNAASGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPE-QQIDKIAQGGVWT-GQDA 157 (177)
T ss_pred CchhHHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHH-HhHHHhcCcCeEe-HHHH
Confidence 999999999999999999999999999987766433222222 4445555 54 6788999999999 9999
Q ss_pred HHcCCcccccCCCCHH
Q 013607 244 LFAGLGTDYVPSGNLG 259 (439)
Q Consensus 244 ~~~GLv~~vv~~~~l~ 259 (439)
++.||||++.+.+++.
T Consensus 158 ~~~GLVD~v~~~~e~~ 173 (177)
T cd07014 158 KANGLVDSLGSFDDAV 173 (177)
T ss_pred HHcCCcccCCCHHHHH
Confidence 9999999999876654
No 94
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.77 E-value=3.4e-18 Score=157.86 Aligned_cols=145 Identities=12% Similarity=0.014 Sum_probs=115.3
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEE-eCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHH
Q 013607 78 AVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIE-GSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS 156 (439)
Q Consensus 78 ~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVlt-g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (439)
++|.++ ..++..+...+.+.|+.++.++ ++.|+|. .+ .|+++.... .
T Consensus 2 ~vv~i~-----g~I~~~~~~~l~~~l~~a~~~~-~~~vvl~InS------pGG~v~~~~--------------------~ 49 (187)
T cd07020 2 YVLEIN-----GAITPATADYLERAIDQAEEGG-ADALIIELDT------PGGLLDSTR--------------------E 49 (187)
T ss_pred EEEEEe-----eEEChHHHHHHHHHHHHHHhCC-CCEEEEEEEC------CCCCHHHHH--------------------H
Confidence 556665 3466778888999999998765 7877775 32 234433211 2
Q ss_pred HHHHHHhCCCcEEEEEC---CcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCCh--------------hHHHHHhh
Q 013607 157 LICKISEYKKPYISLMD---GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDV--------------GFSYIAAK 219 (439)
Q Consensus 157 l~~~l~~~~kPvIAavn---G~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~--------------G~~~~l~r 219 (439)
++..|..+||||||+|+ |+|.|||+.++++||+++++++++|+++++..|..+.. +....+++
T Consensus 50 i~~~l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (187)
T cd07020 50 IVQAILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAE 129 (187)
T ss_pred HHHHHHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 44567789999999999 99999999999999999999999999999985554432 34557888
Q ss_pred CCCc--hHHHHHHhhcCCCCCcHHHHHHcCCcccccCCC
Q 013607 220 GPGG--GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSG 256 (439)
Q Consensus 220 ~~G~--~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~ 256 (439)
..|. . .+.+++++|+.++ |+||+++||||+++++.
T Consensus 130 ~~G~~~~-~a~~~l~~g~~~~-a~eA~~~Glvd~v~~~~ 166 (187)
T cd07020 130 LRGRNAE-WAEKAVRESLSLT-AEEALKLGVIDLIAADL 166 (187)
T ss_pred HcCCCHH-HHHHHHHcCCeec-HHHHHHcCCcccccCCH
Confidence 8887 5 7899999999999 99999999999999875
No 95
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.62 E-value=1.5e-15 Score=142.87 Aligned_cols=159 Identities=14% Similarity=0.095 Sum_probs=110.3
Q ss_pred cEEEEEEcCC--CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHH
Q 013607 76 GVAVITLDRP--KALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTA 153 (439)
Q Consensus 76 ~V~~Itlnrp--~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 153 (439)
+|++|.++.| +..+.-+..++.+|.++|+.+..|+++++|||+ .||+|+|+..+..
T Consensus 1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~-----~~s~Gg~~~~~~~----------------- 58 (211)
T cd07019 1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR-----VNSPGGSVTASEV----------------- 58 (211)
T ss_pred CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE-----EcCCCcCHHHHHH-----------------
Confidence 3556666543 222344566789999999999999999999996 7999999976532
Q ss_pred HHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccc------------cccCCCC---ChhHH----
Q 013607 154 EYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE------------NGIGLFP---DVGFS---- 214 (439)
Q Consensus 154 ~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe------------~~lGl~P---~~G~~---- 214 (439)
+.+.+..+..++|||||+++|+|.|+|+.|+++||++++++.+.|+.-. -++|+-+ -.++.
T Consensus 59 ~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~ 138 (211)
T cd07019 59 IRAELAAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVS 138 (211)
T ss_pred HHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCC
Confidence 1234557788999999999999999999999999999999998886332 1233311 11000
Q ss_pred ----------HH---------------HhhCCCchHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCC
Q 013607 215 ----------YI---------------AAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGN 257 (439)
Q Consensus 215 ----------~~---------------l~r~~G~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~ 257 (439)
.. ..+.-+......+-+..|..++ +++|++.||||++...++
T Consensus 139 ~~~~~s~e~r~~~~~~ld~~~~~f~~~Va~~R~~~~~~l~~~~~~~~~~-~~~A~~~GLvD~i~~~~~ 205 (211)
T cd07019 139 ITRALPPEAQLGLQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWT-GQDAKANGLVDSLGDFDD 205 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHhcCCcEEe-HHHHHHcCCcccCCCHHH
Confidence 00 0111111112233356788898 999999999999976444
No 96
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.50 E-value=2.8e-13 Score=127.77 Aligned_cols=98 Identities=17% Similarity=0.178 Sum_probs=74.7
Q ss_pred cCCCCCCC-CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHH
Q 013607 83 DRPKALNA-MNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKI 161 (439)
Q Consensus 83 nrp~~~Na-l~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 161 (439)
++|...|+ ++..++.+|.++|+.++.|+++++|||+. +|.|+++.... .+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~-----~s~gg~~~~~~-----------------~l~~~l~~~ 70 (214)
T cd07022 13 PRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI-----DSPGGEVAGVF-----------------ELADAIRAA 70 (214)
T ss_pred CCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE-----eCCCCcHHHHH-----------------HHHHHHHHH
Confidence 45555565 45789999999999999999999999975 45566653321 112223333
Q ss_pred HhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEecccc
Q 013607 162 SEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN 203 (439)
Q Consensus 162 ~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~ 203 (439)
.. +|||||+++|.|.|||+.|+++||++++++.+.|+...+
T Consensus 71 ~~-~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~ 111 (214)
T cd07022 71 RA-GKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSIGV 111 (214)
T ss_pred hc-CCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEeeeE
Confidence 44 699999999999999999999999999999998865543
No 97
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.48 E-value=9.1e-14 Score=148.80 Aligned_cols=158 Identities=18% Similarity=0.193 Sum_probs=117.8
Q ss_pred cCcEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC--CCcccCCcchhhhHhhhcCCCCCchHH
Q 013607 74 PNGVAVITLDRPK--ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGP--RAFCAGMDIKGVVAEIQKDRNTPLVPK 149 (439)
Q Consensus 74 ~~~V~~Itlnrp~--~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~--~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 149 (439)
+++|++|+++.+= ..|..+....+.+.+.|+.+..|+++++|||+-..| .+||+ .
T Consensus 307 ~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as----e----------------- 365 (584)
T TIGR00705 307 QDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS----E----------------- 365 (584)
T ss_pred CCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH----H-----------------
Confidence 6789999999763 234444445677888999999999999999985422 33432 1
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeE------eccc------cccCCCCChhHHHHH
Q 013607 150 VFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL------AMPE------NGIGLFPDVGFSYIA 217 (439)
Q Consensus 150 ~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f------~~pe------~~lGl~P~~G~~~~l 217 (439)
..++.+..+...+|||||.++|.|.+||+.++++||.++|++.+.+ +++. .++|+.|+...+..+
T Consensus 366 ---~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~ 442 (584)
T TIGR00705 366 ---IIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHEL 442 (584)
T ss_pred ---HHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCc
Confidence 1112334566778999999999999999999999999999999877 5553 588998876665544
Q ss_pred hh----------------------------CCCchHH-----HHHHhhcCCCCCcHHHHHHcCCcccccCCCC
Q 013607 218 AK----------------------------GPGGGSV-----GAYLGMTGKRISTPSDALFAGLGTDYVPSGN 257 (439)
Q Consensus 218 ~r----------------------------~~G~~~~-----a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~ 257 (439)
.. .++.+ + ..+.+++|+.++ |++|+++||||++..-++
T Consensus 443 ~~~s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~-R~l~~e~v~~ia~Grv~t-g~eA~~~GLVD~ig~~~~ 513 (584)
T TIGR00705 443 ANVSLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAG-RNLTPTQVDKVAQGRVWT-GEDAVSNGLVDALGGLDE 513 (584)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCHHHHHHHHhCCCcC-HHHHHHcCCcccCCCHHH
Confidence 32 33333 3 677889999999 999999999999954333
No 98
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.48 E-value=3.7e-13 Score=121.09 Aligned_cols=135 Identities=14% Similarity=0.050 Sum_probs=102.9
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCCcEEE
Q 013607 91 MNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYIS 170 (439)
Q Consensus 91 l~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIA 170 (439)
++..+..+|.+.|+.++.|+.+++|+|.. .|.|+|+.... .+...|..++||||+
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~-----~s~Gg~~~~~~--------------------~i~~~l~~~~kpvva 62 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEV-----NTPGGRVDAGM--------------------NIVDALQASRKPVIA 62 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEE-----ECCCcCHHHHH--------------------HHHHHHHHhCCCEEE
Confidence 55688999999999999999999999965 45666654321 244467778899999
Q ss_pred EECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHH------H-------HHh------hCCCchHHHHHHh
Q 013607 171 LMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFS------Y-------IAA------KGPGGGSVGAYLG 231 (439)
Q Consensus 171 avnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~------~-------~l~------r~~G~~~~a~~l~ 231 (439)
.++|.|.++|+.|+++||.|++.+++.|++..+..+.....+-. . .+. |-+... ...+++
T Consensus 63 ~~~g~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~-~~~~~~ 141 (161)
T cd00394 63 YVGGQAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTE-KLEEDI 141 (161)
T ss_pred EECChhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHh
Confidence 99999999999999999999999999999988876553321000 0 111 112222 356777
Q ss_pred hcCCCCCcHHHHHHcCCcccc
Q 013607 232 MTGKRISTPSDALFAGLGTDY 252 (439)
Q Consensus 232 ltG~~i~~A~eA~~~GLv~~v 252 (439)
..|..++ |+||+++||||++
T Consensus 142 ~~~~~~~-a~eA~~~GLvD~i 161 (161)
T cd00394 142 EKDLVLT-AQEALEYGLVDAL 161 (161)
T ss_pred cCCcEEc-HHHHHHcCCcCcC
Confidence 8899999 9999999999975
No 99
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.41 E-value=1.9e-12 Score=116.57 Aligned_cols=130 Identities=15% Similarity=0.151 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEEC
Q 013607 94 DMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMD 173 (439)
Q Consensus 94 ~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavn 173 (439)
.+...+.+.|+.+..+..+ .+.|.+.|+ ++.. ...+...|..++||||+.++
T Consensus 15 ~~~~~~~~~l~~~~~~~~i-~l~inspGG-------~~~~--------------------~~~i~~~i~~~~~pvi~~v~ 66 (160)
T cd07016 15 VTAKEFKDALDALGDDSDI-TVRINSPGG-------DVFA--------------------GLAIYNALKRHKGKVTVKID 66 (160)
T ss_pred cCHHHHHHHHHhccCCCCE-EEEEECCCC-------CHHH--------------------HHHHHHHHHhcCCCEEEEEc
Confidence 4677888888888877433 445566553 2211 11355578889999999999
Q ss_pred CcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhH---------------HHHHhhCCCch-HHHHHHhhcCCCC
Q 013607 174 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGF---------------SYIAAKGPGGG-SVGAYLGMTGKRI 237 (439)
Q Consensus 174 G~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~---------------~~~l~r~~G~~-~~a~~l~ltG~~i 237 (439)
|.|.|+|+.++++||+|++++++.|+++....|..+.... ...+.+..|.. ....+++.++..+
T Consensus 67 g~a~s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l 146 (160)
T cd07016 67 GLAASAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWL 146 (160)
T ss_pred chHHhHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeEC
Confidence 9999999999999999999999999998777665444321 23366777842 2667777777789
Q ss_pred CcHHHHHHcCCcccc
Q 013607 238 STPSDALFAGLGTDY 252 (439)
Q Consensus 238 ~~A~eA~~~GLv~~v 252 (439)
+ |+||+++||+|+|
T Consensus 147 ~-a~eA~~~GliD~v 160 (160)
T cd07016 147 T-AQEAVELGFADEI 160 (160)
T ss_pred c-HHHHHHcCCCCcC
Confidence 8 9999999999985
No 100
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.40 E-value=2.2e-12 Score=121.15 Aligned_cols=101 Identities=19% Similarity=0.141 Sum_probs=79.9
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHH
Q 013607 77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS 156 (439)
Q Consensus 77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (439)
|++|.++.+=... ...++.+|.++|+.+..|+++++|+|++ +|.|+|+.... ..++
T Consensus 2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~-----~s~Gg~~~~~~-----------------~i~~ 57 (208)
T cd07023 2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRI-----NSPGGSVVASE-----------------EIYR 57 (208)
T ss_pred EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEE-----ECCCCCHHHHH-----------------HHHH
Confidence 5666666431101 3788999999999999999999999987 46788876421 1234
Q ss_pred HHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEecc
Q 013607 157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP 201 (439)
Q Consensus 157 l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~p 201 (439)
.+..+..++|||||+++|.|.|+|+.|+++||++++++.+.|+..
T Consensus 58 ~i~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~i 102 (208)
T cd07023 58 EIRRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSI 102 (208)
T ss_pred HHHHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeC
Confidence 556778889999999999999999999999999999999988643
No 101
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.32 E-value=2.6e-11 Score=113.86 Aligned_cols=149 Identities=15% Similarity=0.098 Sum_probs=101.4
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHH
Q 013607 77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS 156 (439)
Q Consensus 77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (439)
|++|+++.+=. ....+|.++|+.+..|+++++|||++. |.|+|+.... .
T Consensus 2 v~vi~i~g~i~------~s~~~l~~~l~~a~~d~~i~~vvl~~~-----s~Gg~~~~~~--------------------~ 50 (207)
T TIGR00706 2 IAILPVSGAIA------VSPEDFDKKIKRIKDDKSIKALLLRIN-----SPGGTVVASE--------------------E 50 (207)
T ss_pred EEEEEEEEEEe------cCHHHHHHHHHHHhhCCCccEEEEEec-----CCCCCHHHHH--------------------H
Confidence 55666654321 335789999999999999999999864 5677664321 2
Q ss_pred HHHHHHhCC--CcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccc------------cCCCCC------------
Q 013607 157 LICKISEYK--KPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG------------IGLFPD------------ 210 (439)
Q Consensus 157 l~~~l~~~~--kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~------------lGl~P~------------ 210 (439)
+...|..++ |||||+++|.|.|+|+.|+++||.++|++++.|+...+. +|+-+.
T Consensus 51 l~~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~ 130 (207)
T TIGR00706 51 IYEKLKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGS 130 (207)
T ss_pred HHHHHHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCC
Confidence 334555666 999999999999999999999999999999987654332 333110
Q ss_pred ------hhHHHHH---------------h--hCCCchHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHH
Q 013607 211 ------VGFSYIA---------------A--KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLG 259 (439)
Q Consensus 211 ------~G~~~~l---------------~--r~~G~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~ 259 (439)
.-.-..+ . |-+... ... -++.|+.++ +++|++.||||++...+++.
T Consensus 131 ~~~~~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~-~~~-~~~~~~~~~-~~~A~~~gLvD~i~~~~~~~ 199 (207)
T TIGR00706 131 PTRELTPEERDILQNLVNESYEQFVQVVAKGRNLPVE-DVK-KFADGRVFT-GRQALKLRLVDKLGTEDDAL 199 (207)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHH-HHH-HHhcCCccc-HHHHHHcCCCcccCCHHHHH
Confidence 0000001 1 222221 122 346789998 99999999999998765554
No 102
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.18 E-value=2.4e-10 Score=104.51 Aligned_cols=142 Identities=16% Similarity=0.186 Sum_probs=98.0
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHH
Q 013607 78 AVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSL 157 (439)
Q Consensus 78 ~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (439)
.+|.++ ..+++.+...|.+.|+.+.+++ +..|+|.=. |.|+++... ..+
T Consensus 2 ~vi~i~-----g~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in-----spGG~v~~~--------------------~~I 50 (178)
T cd07021 2 YVIPIE-----GEIDPGLAAFVERALKEAKEEG-ADAVVLDID-----TPGGRVDSA--------------------LEI 50 (178)
T ss_pred EEEEEe-----eEECHHHHHHHHHHHHHHHhCC-CCeEEEEEE-----CcCCCHHHH--------------------HHH
Confidence 455565 3466778888999999998886 677666422 123333221 235
Q ss_pred HHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhH--------HHH------HhhCCCc
Q 013607 158 ICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGF--------SYI------AAKGPGG 223 (439)
Q Consensus 158 ~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~--------~~~------l~r~~G~ 223 (439)
...|..+++|||+.|+|.|.|+|+.++++||+++|++++.|+.+++- +..|+ +.. +.+.-|+
T Consensus 51 ~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v----~~~~~~~~~~K~~~~~~~~~~~~A~~~gr 126 (178)
T cd07021 51 VDLILNSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPI----PGDGNGAADEKVQSYWRAKMRAAAEKKGR 126 (178)
T ss_pred HHHHHhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeE----cCCCccchhHHHHHHHHHHHHHHHHHhCC
Confidence 56788899999999999999999999999999999999999988543 22222 111 2223343
Q ss_pred hH-HHHHHhhcC-------------CCCCcHHHHHHcCCcccccCC
Q 013607 224 GS-VGAYLGMTG-------------KRISTPSDALFAGLGTDYVPS 255 (439)
Q Consensus 224 ~~-~a~~l~ltG-------------~~i~~A~eA~~~GLv~~vv~~ 255 (439)
.. .+..|+--. -.++ ++||++.|++|.+.++
T Consensus 127 ~~~~a~~mv~~~~~v~~~~~~~~~~l~lt-a~eA~~~g~~d~ia~~ 171 (178)
T cd07021 127 DPDIAEAMVDKDIEVPGVGIKGGELLTLT-ADEALKVGYAEGIAGS 171 (178)
T ss_pred CHHHHHHHhhhhcccccccccccceeeeC-HHHHHHhCCeEEEECC
Confidence 21 333343333 2699 9999999999999864
No 103
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.16 E-value=1.6e-10 Score=109.59 Aligned_cols=91 Identities=11% Similarity=0.042 Sum_probs=75.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCCcEE
Q 013607 90 AMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYI 169 (439)
Q Consensus 90 al~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvI 169 (439)
.-+..++.+|.+.|+.+..|+.|++|||+..++ .| ++.++.++.. .+..+...+||||
T Consensus 25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~-gg-~~~~~~el~~--------------------~i~~~~~~~kpVi 82 (222)
T cd07018 25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDGL-SG-GLAKLEELRQ--------------------ALERFRASGKPVI 82 (222)
T ss_pred CcCCccHHHHHHHHHHHhcCCCeEEEEEECCCC-CC-CHHHHHHHHH--------------------HHHHHHHhCCeEE
Confidence 345677899999999999999999999999874 55 6666665532 3345666899999
Q ss_pred EEECCcccchhhhhhhcCCeEEEcCCeeEecccc
Q 013607 170 SLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN 203 (439)
Q Consensus 170 AavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~ 203 (439)
|.++| |.+||+.|+++||.+++.+.+.|+...+
T Consensus 83 a~~~~-~~sggy~lasaad~I~a~p~~~vg~iGv 115 (222)
T cd07018 83 AYADG-YSQGQYYLASAADEIYLNPSGSVELTGL 115 (222)
T ss_pred EEeCC-CCchhhhhhhhCCEEEECCCceEEeecc
Confidence 99998 8899999999999999999999987543
No 104
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.82 E-value=4.8e-09 Score=103.52 Aligned_cols=171 Identities=16% Similarity=0.123 Sum_probs=142.6
Q ss_pred cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHH
Q 013607 76 GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEY 155 (439)
Q Consensus 76 ~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 155 (439)
++..+.++ |+. |..|.++..+|..-|+.++.+..+++.++|+...+.|++|.|..++... .......++.++.
T Consensus 66 ~~~~~dmv-iea-v~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg-----~h~fspa~~m~Ll 138 (380)
T KOG1683|consen 66 GFANADMV-IEA-VFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVG-----MHFFSPAHWMQLL 138 (380)
T ss_pred ccccccee-ccc-hhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhcc-----ccccCHHHHHHHH
Confidence 78888888 775 9999999999999999999999899999999877899999999998753 2344456788889
Q ss_pred HHHHHHHhCCCcEEEEECCcccchh--hhhhhcCCeEEEc--CCeeEeccccccCCCCChhHHHHHhhCCCchHHHHHHh
Q 013607 156 SLICKISEYKKPYISLMDGVTMGFG--IGISGHGRYRIVT--EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLG 231 (439)
Q Consensus 156 ~l~~~l~~~~kPvIAavnG~a~GgG--~~lal~cD~ria~--e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~a~~l~ 231 (439)
+++....+++.|+.+++||.+--|| |-++.+|+|++.- ..-..+..+...++..+..-.-.+....|.. .+-.-+
T Consensus 139 Eii~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~-~g~~~L 217 (380)
T KOG1683|consen 139 EIILALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFR-VGERAL 217 (380)
T ss_pred HHHHhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCcc-ccHHHH
Confidence 9999999999999999999999998 8899999999998 4444567888888543333444445555776 666667
Q ss_pred hcCCCCCcHHHHHHcCCcccccCC
Q 013607 232 MTGKRISTPSDALFAGLGTDYVPS 255 (439)
Q Consensus 232 ltG~~i~~A~eA~~~GLv~~vv~~ 255 (439)
--|.-++ -.||++-|+++++.|.
T Consensus 218 ~d~~gfd-v~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 218 ADGVGFD-VAEALAVGLGDEIGPR 240 (380)
T ss_pred hhccCcc-HHHHHhhccchhccch
Confidence 7788998 8999999999999984
No 105
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.56 E-value=1e-06 Score=79.99 Aligned_cols=139 Identities=14% Similarity=0.155 Sum_probs=96.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCCcEE
Q 013607 90 AMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYI 169 (439)
Q Consensus 90 al~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvI 169 (439)
.++..+..-|.+.++.++++ .++.|+|.=. |.|+++... ..++..|...++||+
T Consensus 9 ~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in-----SPGG~v~~~--------------------~~I~~~i~~~~~pvv 62 (172)
T cd07015 9 QITSYTYDQFDRYITIAEQD-NAEAIIIELD-----TPGGRADAA--------------------GNIVQRIQQSKIPVI 62 (172)
T ss_pred EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE-----CCCCCHHHH--------------------HHHHHHHHhcCcCEE
Confidence 46677788889999998875 4677777422 223433321 123446677899999
Q ss_pred EEEC---CcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCC----h---h-HHHH------HhhCCCch-HHHHHHh
Q 013607 170 SLMD---GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPD----V---G-FSYI------AAKGPGGG-SVGAYLG 231 (439)
Q Consensus 170 Aavn---G~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~----~---G-~~~~------l~r~~G~~-~~a~~l~ 231 (439)
+.|+ |.|..+|.-++++||.++|.+++.++....-.|..+. . - .+.. +.+.-|+. ..+..++
T Consensus 63 ~~v~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v 142 (172)
T cd07015 63 IYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFI 142 (172)
T ss_pred EEEecCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 9999 9999999999999999999999999987764432220 0 0 0111 11222321 1555666
Q ss_pred hcCCCCCcHHHHHHcCCcccccCC
Q 013607 232 MTGKRISTPSDALFAGLGTDYVPS 255 (439)
Q Consensus 232 ltG~~i~~A~eA~~~GLv~~vv~~ 255 (439)
-....++ ++||+++|++|.++.+
T Consensus 143 ~~~~~lt-a~EA~~~G~iD~ia~~ 165 (172)
T cd07015 143 TKDLSLT-PEEALKYGVIEVVARD 165 (172)
T ss_pred HhhcCcC-HHHHHHcCCceeeeCC
Confidence 6777899 9999999999999965
No 106
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=98.54 E-value=8.1e-07 Score=80.17 Aligned_cols=136 Identities=14% Similarity=0.075 Sum_probs=89.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCCcEEE
Q 013607 91 MNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYIS 170 (439)
Q Consensus 91 l~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIA 170 (439)
++..+..++.+.|..++.++..+.|+|.=. |.|+++.. ...++..|..+++|+++
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In-----SpGG~v~~--------------------~~~i~~~i~~~~~~v~~ 63 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN-----SPGGDVFA--------------------GMAIYDTIKFIKADVVT 63 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE-----CCCCcHHH--------------------HHHHHHHHHhcCCCceE
Confidence 567889999999999998877666666322 22333321 11355567788999999
Q ss_pred EECCcccchhhhhhhcCC--eEEEcCCeeEeccccccCCCCChhHHH---------------HHhhCCCch-HHHHHHhh
Q 013607 171 LMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGFSY---------------IAAKGPGGG-SVGAYLGM 232 (439)
Q Consensus 171 avnG~a~GgG~~lal~cD--~ria~e~a~f~~pe~~lGl~P~~G~~~---------------~l~r~~G~~-~~a~~l~l 232 (439)
.+.|.|.++|.-++++|| .|++.+++.|.+....-|......-.. .+.+.-|.. ..-.+++-
T Consensus 64 ~~~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~ 143 (162)
T cd07013 64 IIDGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLE 143 (162)
T ss_pred EEEeehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHc
Confidence 999999999999999999 688888888876543322211100000 111222321 13344555
Q ss_pred cCCCCCcHHHHHHcCCcccc
Q 013607 233 TGKRISTPSDALFAGLGTDY 252 (439)
Q Consensus 233 tG~~i~~A~eA~~~GLv~~v 252 (439)
.+..++ |+||+++||||++
T Consensus 144 ~~~~~s-a~eA~~~GliD~i 162 (162)
T cd07013 144 RDTWLS-AREAVEYGFADTI 162 (162)
T ss_pred CCcccc-HHHHHHcCCCCcC
Confidence 566678 9999999999985
No 107
>PRK10949 protease 4; Provisional
Probab=98.45 E-value=3.1e-06 Score=91.35 Aligned_cols=164 Identities=17% Similarity=0.124 Sum_probs=104.4
Q ss_pred cCcEEEEEEcCC-----CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchH
Q 013607 74 PNGVAVITLDRP-----KALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVP 148 (439)
Q Consensus 74 ~~~V~~Itlnrp-----~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 148 (439)
.+.|++|.++.+ ...+.++. +.+.+.|+.+..|+++++|||.-..|+ +... .
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInSpG-----Gs~~---a------------ 381 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNSPG-----GSVT---A------------ 381 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecCCC-----CcHH---H------------
Confidence 567899888742 22234444 457788889999999999999865432 2111 0
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEecccc------------ccCCCCChhHH--
Q 013607 149 KVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN------------GIGLFPDVGFS-- 214 (439)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~------------~lGl~P~~G~~-- 214 (439)
....++.+..++...|||||.+.|.|..||..++++||.++|.+.+..|.-.+ ++|+-++.-.+
T Consensus 382 --se~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~ 459 (618)
T PRK10949 382 --SEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSP 459 (618)
T ss_pred --HHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccc
Confidence 11122334445667899999999999999999999999999998765443222 24432211100
Q ss_pred ---------------H------------HH-----hhCCCchHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHHHH
Q 013607 215 ---------------Y------------IA-----AKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLK 262 (439)
Q Consensus 215 ---------------~------------~l-----~r~~G~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~~~ 262 (439)
. ++ .|-+... . .+-+..|+.++ +++|++.||||++-.-++....+
T Consensus 460 ~~~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~-~-v~~ia~Grv~t-g~~A~~~GLVD~lG~~~~ai~~a 536 (618)
T PRK10949 460 LADVSITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPE-Q-IDKIAQGHVWT-GQDAKANGLVDSLGDFDDAVAKA 536 (618)
T ss_pred cCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHH-H-HHHHhcCCccc-HHHHHHcCCCccCCCHHHHHHHH
Confidence 0 11 0122222 2 22356899999 99999999999997655544433
Q ss_pred HHH
Q 013607 263 EAL 265 (439)
Q Consensus 263 ~~l 265 (439)
.++
T Consensus 537 ~~~ 539 (618)
T PRK10949 537 AEL 539 (618)
T ss_pred HHH
Confidence 333
No 108
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.38 E-value=2.1e-06 Score=80.11 Aligned_cols=139 Identities=14% Similarity=0.042 Sum_probs=87.4
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEE--EEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCC
Q 013607 89 NAMNLDMDIKYKSFLDEWESDPRVKCVL--IEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKK 166 (439)
Q Consensus 89 Nal~~~m~~eL~~~l~~~~~d~~vr~vV--ltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~k 166 (439)
..++..+.+.+...|..++.++..+-|. |.+.| +|+.. ...++..|...+.
T Consensus 38 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG-------G~v~~--------------------g~~I~d~i~~~~~ 90 (200)
T PRK00277 38 GEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG-------GSVTA--------------------GLAIYDTMQFIKP 90 (200)
T ss_pred CEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC-------CcHHH--------------------HHHHHHHHHhcCC
Confidence 4477889999999998888654333333 34444 33321 1134456777889
Q ss_pred cEEEEECCcccchhhhhhhcCC--eEEEcCCeeEeccccccCCCCChhH----H-----------HHHhhCCCch-HHHH
Q 013607 167 PYISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGF----S-----------YIAAKGPGGG-SVGA 228 (439)
Q Consensus 167 PvIAavnG~a~GgG~~lal~cD--~ria~e~a~f~~pe~~lGl~P~~G~----~-----------~~l~r~~G~~-~~a~ 228 (439)
|+++.+.|.|.++|..++++++ .|++.+++.|.+....-|......- . ..+...-|.. ....
T Consensus 91 ~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~ 170 (200)
T PRK00277 91 DVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIE 170 (200)
T ss_pred CEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 9999999999999999998753 5777777777665443221100000 0 1122222321 1344
Q ss_pred HHhhcCCCCCcHHHHHHcCCcccccCC
Q 013607 229 YLGMTGKRISTPSDALFAGLGTDYVPS 255 (439)
Q Consensus 229 ~l~ltG~~i~~A~eA~~~GLv~~vv~~ 255 (439)
.++-.+..++ |+||+++||||+|+..
T Consensus 171 ~~~~~~~~ls-a~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 171 KDTDRDNFMS-AEEAKEYGLIDEVLTK 196 (200)
T ss_pred HHhhCCcccc-HHHHHHcCCccEEeec
Confidence 4555567788 9999999999999875
No 109
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.38 E-value=8.3e-05 Score=71.81 Aligned_cols=139 Identities=18% Similarity=0.133 Sum_probs=93.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCCc
Q 013607 88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP 167 (439)
Q Consensus 88 ~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP 167 (439)
.-+++++-.+...+.++.+++.. +-+|-|.-++ +++. |.+-.+ ......+...+..+.....|
T Consensus 76 ~G~~~~~g~rKa~R~~~lA~~~~-lPvV~lvDtp-Ga~~-g~~aE~--------------~G~~~~ia~~~~~~s~~~VP 138 (256)
T PRK12319 76 FGQPHPEGYRKALRLMKQAEKFG-RPVVTFINTA-GAYP-GVGAEE--------------RGQGEAIARNLMEMSDLKVP 138 (256)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECC-CcCC-CHhHHh--------------ccHHHHHHHHHHHHhCCCCC
Confidence 46688999999999998887753 4555554432 3443 332110 01223344566778889999
Q ss_pred EEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHHHHHHhhcCCCCCcHHHHHHcC
Q 013607 168 YISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAG 247 (439)
Q Consensus 168 vIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~a~~l~ltG~~i~~A~eA~~~G 247 (439)
+|+.|-|.|.|||......||+++|.+++.|+. .++-|.+..+-+--.....+.+.+ .++ +.++.+.|
T Consensus 139 ~IsVI~G~~~gGgA~a~~~~D~v~m~~~a~~~v-------~~pe~~a~il~~~~~~a~~aa~~~----~~~-a~~l~~~g 206 (256)
T PRK12319 139 IIAIIIGEGGSGGALALAVADQVWMLENTMYAV-------LSPEGFASILWKDGSRATEAAELM----KIT-AGELLEMG 206 (256)
T ss_pred EEEEEeCCcCcHHHHHhhcCCEEEEecCceEEE-------cCHHHHHHHHhcCcccHHHHHHHc----CCC-HHHHHHCC
Confidence 999999999999888888999999999988774 333333333333211111333333 778 99999999
Q ss_pred CcccccCC
Q 013607 248 LGTDYVPS 255 (439)
Q Consensus 248 Lv~~vv~~ 255 (439)
+||+|+|.
T Consensus 207 ~iD~ii~e 214 (256)
T PRK12319 207 VVDKVIPE 214 (256)
T ss_pred CCcEecCC
Confidence 99999975
No 110
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.26 E-value=0.00013 Score=72.11 Aligned_cols=139 Identities=14% Similarity=0.096 Sum_probs=93.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCCc
Q 013607 88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP 167 (439)
Q Consensus 88 ~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP 167 (439)
.-+++++-.+...+.++.+++.. +-+|-|.-+ +++++ |.+-.+- .........+..+.....|
T Consensus 132 ~G~~~p~g~rKa~Rlm~lA~~f~-lPIItlvDT-pGA~~-G~~AE~~--------------G~~~aiar~l~~~a~~~VP 194 (322)
T CHL00198 132 FGMPSPGGYRKALRLMKHANKFG-LPILTFIDT-PGAWA-GVKAEKL--------------GQGEAIAVNLREMFSFEVP 194 (322)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeC-CCcCc-CHHHHHH--------------hHHHHHHHHHHHHHcCCCC
Confidence 45688999999999999888753 444444333 23554 4322110 0122333455667889999
Q ss_pred EEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHHHHHHhhcCCCCCcHHHHHHcC
Q 013607 168 YISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAG 247 (439)
Q Consensus 168 vIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~a~~l~ltG~~i~~A~eA~~~G 247 (439)
+|++|-|.|.|||+.....||+++|.+++.|+. +.|.++++ .|-+-- +++.+. ...-.++ |++.++.|
T Consensus 195 ~IsVViGeggsGGAlal~~aD~V~m~e~a~~sV------isPEg~a~-Il~~d~---~~a~~a-A~~~~it-a~dL~~~g 262 (322)
T CHL00198 195 IICTIIGEGGSGGALGIGIGDSIMMLEYAVYTV------ATPEACAA-ILWKDS---KKSLDA-AEALKIT-SEDLKVLG 262 (322)
T ss_pred EEEEEeCcccHHHHHhhhcCCeEEEeCCeEEEe------cCHHHHHH-HHhcch---hhHHHH-HHHcCCC-HHHHHhCC
Confidence 999999999888876666799999999998873 23444444 343332 244443 3466898 99999999
Q ss_pred CcccccCC
Q 013607 248 LGTDYVPS 255 (439)
Q Consensus 248 Lv~~vv~~ 255 (439)
+||+|+|.
T Consensus 263 iiD~ii~E 270 (322)
T CHL00198 263 IIDEIIPE 270 (322)
T ss_pred CCeEeccC
Confidence 99999984
No 111
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.24 E-value=7.9e-06 Score=74.38 Aligned_cols=134 Identities=15% Similarity=0.069 Sum_probs=92.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEE--EeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCCcE
Q 013607 91 MNLDMDIKYKSFLDEWESDPRVKCVLI--EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY 168 (439)
Q Consensus 91 l~~~m~~eL~~~l~~~~~d~~vr~vVl--tg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPv 168 (439)
++..+..++...|..++.++..+.|+| .+.| +|+..- ..++..|...+.|+
T Consensus 18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpG-------G~v~~~--------------------~~i~~~l~~~~~~v 70 (171)
T cd07017 18 IDDEVANLIIAQLLYLESEDPKKPIYLYINSPG-------GSVTAG--------------------LAIYDTMQYIKPPV 70 (171)
T ss_pred EcHHHHHHHHHHHHHHHccCCCCceEEEEECCC-------CCHHHH--------------------HHHHHHHHhcCCCE
Confidence 567888999999999988765555544 3443 333211 12444567789999
Q ss_pred EEEECCcccchhhhhhhcCC--eEEEcCCeeEeccccccCCCCChhH---------------HHHHhhCCCch-HHHHHH
Q 013607 169 ISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGF---------------SYIAAKGPGGG-SVGAYL 230 (439)
Q Consensus 169 IAavnG~a~GgG~~lal~cD--~ria~e~a~f~~pe~~lGl~P~~G~---------------~~~l~r~~G~~-~~a~~l 230 (439)
++.+.|.|.++|.-+++++| .|++.+++.|.+.+...+..-...- ...+...-|.. ..-..+
T Consensus 71 ~t~~~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~ 150 (171)
T cd07017 71 STICLGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKD 150 (171)
T ss_pred EEEEEeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999 7999999999988766554322100 00111222322 134455
Q ss_pred hhcCCCCCcHHHHHHcCCcccc
Q 013607 231 GMTGKRISTPSDALFAGLGTDY 252 (439)
Q Consensus 231 ~ltG~~i~~A~eA~~~GLv~~v 252 (439)
+-.+..++ |+||+++||+|+|
T Consensus 151 ~~~~~~lt-a~EA~e~GiiD~V 171 (171)
T cd07017 151 TDRDRYMS-AEEAKEYGLIDKI 171 (171)
T ss_pred hhCCcccc-HHHHHHcCCCccC
Confidence 55777888 9999999999986
No 112
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.22 E-value=1.4e-05 Score=74.98 Aligned_cols=136 Identities=15% Similarity=0.079 Sum_probs=94.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEE--EEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCCc
Q 013607 90 AMNLDMDIKYKSFLDEWESDPRVKCVL--IEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP 167 (439)
Q Consensus 90 al~~~m~~eL~~~l~~~~~d~~vr~vV--ltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP 167 (439)
.++..+..++...|..++..+..+.|. |.+.| +++.. ...++..|..++.|
T Consensus 43 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG-------G~v~~--------------------g~~I~d~i~~~~~~ 95 (207)
T PRK12553 43 QVDDASANDVMAQLLVLESIDPDRDITLYINSPG-------GSVTA--------------------GDAIYDTIQFIRPD 95 (207)
T ss_pred eECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCC-------CcHHH--------------------HHHHHHHHHhcCCC
Confidence 478899999999999998754334333 34444 33321 11345567778899
Q ss_pred EEEEECCcccchhhhhhhcCC--eEEEcCCeeEecccccc-CCCCChhH------------------HHHHhhCCCch-H
Q 013607 168 YISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGI-GLFPDVGF------------------SYIAAKGPGGG-S 225 (439)
Q Consensus 168 vIAavnG~a~GgG~~lal~cD--~ria~e~a~f~~pe~~l-Gl~P~~G~------------------~~~l~r~~G~~-~ 225 (439)
+++.+.|.|.++|.-++++|| .|++.+++.|.+..... |.. .|- ...+.+.-|.. .
T Consensus 96 v~t~~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~--~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e 173 (207)
T PRK12553 96 VQTVCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGI--RGQASDLEIQAREILRMRERLERILAEHTGQSVE 173 (207)
T ss_pred cEEEEEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCC--ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999 59999999998876543 211 111 01122233432 1
Q ss_pred HHHHHhhcCCCCCcHHHHHHcCCcccccCC
Q 013607 226 VGAYLGMTGKRISTPSDALFAGLGTDYVPS 255 (439)
Q Consensus 226 ~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~ 255 (439)
...+++-.+..++ |+||+++||||+|+..
T Consensus 174 ~i~~~~~~~~~lt-a~EA~e~GliD~I~~~ 202 (207)
T PRK12553 174 KIRKDTDRDKWLT-AEEAKDYGLVDQIITS 202 (207)
T ss_pred HHHHHHhcCcccc-HHHHHHcCCccEEcCc
Confidence 4445555778898 9999999999999964
No 113
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.19 E-value=0.00026 Score=70.06 Aligned_cols=139 Identities=15% Similarity=0.076 Sum_probs=92.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCCc
Q 013607 88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP 167 (439)
Q Consensus 88 ~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP 167 (439)
.-+++++-.+...+.++.+++-. +-+|-|.-+ +++++ |.+..+. .........+..+....+|
T Consensus 129 ~G~~~p~g~rKa~R~m~lA~~f~-iPvVtlvDT-pGa~~-g~~aE~~--------------G~~~aia~~l~a~s~~~VP 191 (316)
T TIGR00513 129 FGMPAPEGYRKALRLMKMAERFK-MPIITFIDT-PGAYP-GIGAEER--------------GQSEAIARNLREMARLGVP 191 (316)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEEC-CCCCC-CHHHHHH--------------HHHHHHHHHHHHHHcCCCC
Confidence 46688999999999999888753 455555443 23443 4332211 1123344566678889999
Q ss_pred EEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHHHHHHhhcCCCCCcHHHHHHcC
Q 013607 168 YISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAG 247 (439)
Q Consensus 168 vIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~a~~l~ltG~~i~~A~eA~~~G 247 (439)
+|++|-|.|.|||......||+++|.+++.++ ++++-|+...|-+-.. ++.+..- -..++ +.++.+.|
T Consensus 192 ~IsVViGeggsGGAla~~~aD~v~m~~~a~~s-------VisPEg~a~Il~kd~~---~a~~aae-~~~~t-a~~l~~~G 259 (316)
T TIGR00513 192 VICTVIGEGGSGGALAIGVGDKVNMLEYSTYS-------VISPEGCAAILWKDAS---KAPKAAE-AMKIT-APDLKELG 259 (316)
T ss_pred EEEEEecccccHHHhhhccCCEEEEecCceEE-------ecCHHHHHHHhccchh---hHHHHHH-HccCC-HHHHHHCC
Confidence 99999999988887655579999999998876 3333444444433211 2222222 36778 99999999
Q ss_pred CcccccCC
Q 013607 248 LGTDYVPS 255 (439)
Q Consensus 248 Lv~~vv~~ 255 (439)
+||+|+|.
T Consensus 260 ~iD~II~e 267 (316)
T TIGR00513 260 LIDSIIPE 267 (316)
T ss_pred CCeEeccC
Confidence 99999974
No 114
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.17 E-value=0.00033 Score=69.47 Aligned_cols=139 Identities=15% Similarity=0.107 Sum_probs=94.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCCc
Q 013607 88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP 167 (439)
Q Consensus 88 ~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP 167 (439)
.-+++++-.+...+.++.+++- .+-+|-|.-+ +++++ |.+-.+ ..........+..+.....|
T Consensus 129 ~G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDT-pGa~~-G~~aE~--------------~G~~~aia~~l~~~a~~~VP 191 (319)
T PRK05724 129 FGMPRPEGYRKALRLMKMAEKF-GLPIITFIDT-PGAYP-GIGAEE--------------RGQSEAIARNLREMARLKVP 191 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeC-CCCCC-CHHHHh--------------ccHHHHHHHHHHHHhCCCCC
Confidence 4568899999999999888765 3555555444 23444 433211 01223344567778899999
Q ss_pred EEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHHHHHHhhcCCCCCcHHHHHHcC
Q 013607 168 YISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAG 247 (439)
Q Consensus 168 vIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~a~~l~ltG~~i~~A~eA~~~G 247 (439)
+|+.|-|.|.|||......||+++|.+++.|+ ++++-|++..|-+-.. .+.+..- ...++ +.++.+.|
T Consensus 192 ~IsVIiGeg~sGGAla~~~aD~v~m~~~A~~s-------visPEg~a~Il~~~~~---~a~~aae-~~~it-a~~l~~~g 259 (319)
T PRK05724 192 IICTVIGEGGSGGALAIGVGDRVLMLEYSTYS-------VISPEGCASILWKDAS---KAPEAAE-AMKIT-AQDLKELG 259 (319)
T ss_pred EEEEEeCCccHHHHHHHhccCeeeeecCceEe-------ecCHHHHHHHHhcCch---hHHHHHH-HcCCC-HHHHHHCC
Confidence 99999999988887666679999999888776 4444444444444321 3333333 56688 99999999
Q ss_pred CcccccCC
Q 013607 248 LGTDYVPS 255 (439)
Q Consensus 248 Lv~~vv~~ 255 (439)
+||+|+|.
T Consensus 260 ~iD~II~E 267 (319)
T PRK05724 260 IIDEIIPE 267 (319)
T ss_pred CceEeccC
Confidence 99999974
No 115
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.15 E-value=0.00046 Score=70.16 Aligned_cols=138 Identities=15% Similarity=0.106 Sum_probs=91.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCCcE
Q 013607 89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY 168 (439)
Q Consensus 89 Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPv 168 (439)
.+++++-.+...+.++.+++.. +-+|-|.-+. +++ .|.+..+. .........+..+....+|+
T Consensus 200 G~~~peGyRKAlR~mklAekf~-lPIVtLVDTp-GA~-pG~~AEe~--------------Gqa~aIAr~l~ams~l~VPi 262 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKFG-FPILTFVDTP-GAY-AGIKAEEL--------------GQGEAIAFNLREMFGLRVPI 262 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCC-CcC-CCHHHHHH--------------hHHHHHHHHHHHHhcCCCCE
Confidence 4688999999999999888753 4555554432 344 33332221 12233445666788999999
Q ss_pred EEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHHHHHHhhcCCCCCcHHHHHHcCC
Q 013607 169 ISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGL 248 (439)
Q Consensus 169 IAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~a~~l~ltG~~i~~A~eA~~~GL 248 (439)
|+.|-|.+.|||.....+||+++|.+++.++. +.|.++++..+....-.. .+.+ .-.++ |+++++.|+
T Consensus 263 ISVViGeGgSGGAlalg~aD~VlMle~A~ysV------isPEgaAsILwkd~~~A~-eAAe----alkit-A~dL~~~Gi 330 (431)
T PLN03230 263 IATVIGEGGSGGALAIGCGNRMLMMENAVYYV------ASPEACAAILWKSAAAAP-KAAE----ALRIT-AAELVKLGV 330 (431)
T ss_pred EEEEeCCCCcHHHHHhhcCCEEEEecCCEEEe------cCHHHHHHHHhccccchH-HHHH----HcCCC-HHHHHhCCC
Confidence 99999999666655555799999999987663 224444444333321111 3333 34899 999999999
Q ss_pred cccccCC
Q 013607 249 GTDYVPS 255 (439)
Q Consensus 249 v~~vv~~ 255 (439)
||+|+|.
T Consensus 331 ID~II~E 337 (431)
T PLN03230 331 VDEIVPE 337 (431)
T ss_pred CeEeccC
Confidence 9999974
No 116
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=98.08 E-value=0.00043 Score=74.55 Aligned_cols=139 Identities=12% Similarity=0.053 Sum_probs=95.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCCc
Q 013607 88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP 167 (439)
Q Consensus 88 ~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP 167 (439)
.-+++++-++...+.++.++... +-+|-|.=+ +++++ |.+..+. .....+...+..+....+|
T Consensus 220 fG~~~peGyRKAlRlmkLAekfg-LPIVtLVDT-pGA~p-G~~AEe~--------------Gq~~aIArnl~amasl~VP 282 (762)
T PLN03229 220 FGMPTPHGYRKALRMMYYADHHG-FPIVTFIDT-PGAYA-DLKSEEL--------------GQGEAIAHNLRTMFGLKVP 282 (762)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEEC-CCcCC-CchhHHH--------------hHHHHHHHHHHHHhCCCCC
Confidence 45788888999999988887653 444444333 23544 3332221 1223344566678899999
Q ss_pred EEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHHHHHHhhcCCCCCcHHHHHHcC
Q 013607 168 YISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAG 247 (439)
Q Consensus 168 vIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~a~~l~ltG~~i~~A~eA~~~G 247 (439)
+|++|-|.|.|||+.....||+++|.+++.|+ +.++-|++..|-+-.. ++.+ +...-.++ |++.+++|
T Consensus 283 ~ISVViGeggSGGAlA~g~aD~VlMle~A~~s-------VisPEgaAsILwkd~~---~A~e-AAe~lkiT-a~dL~~lG 350 (762)
T PLN03229 283 IVSIVIGEGGSGGALAIGCANKLLMLENAVFY-------VASPEACAAILWKSAK---AAPK-AAEKLRIT-AQELCRLQ 350 (762)
T ss_pred EEEEEeCCcchHHHHHhhcCCEEEEecCCeEE-------ecCHHHHHHHHhcCcc---cHHH-HHHHcCCC-HHHHHhCC
Confidence 99999999988888877889999999988765 3333444444444332 3333 34566899 99999999
Q ss_pred CcccccCC
Q 013607 248 LGTDYVPS 255 (439)
Q Consensus 248 Lv~~vv~~ 255 (439)
+||+|+|.
T Consensus 351 iiD~IIpE 358 (762)
T PLN03229 351 IADGIIPE 358 (762)
T ss_pred CCeeeccC
Confidence 99999984
No 117
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=98.07 E-value=1e-05 Score=74.18 Aligned_cols=137 Identities=18% Similarity=0.133 Sum_probs=89.1
Q ss_pred CCHHHHHHHHHHHHHHhcCCCce--EEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCCcE
Q 013607 91 MNLDMDIKYKSFLDEWESDPRVK--CVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY 168 (439)
Q Consensus 91 l~~~m~~eL~~~l~~~~~d~~vr--~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPv 168 (439)
++.++...+...|..++..+..+ .|.|.+.| +|+.. ...+...|..++.|+
T Consensus 25 I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpG-------G~v~~--------------------g~~i~~~i~~~~~~v 77 (182)
T PF00574_consen 25 IDEESANRLISQLLYLENEDKNKPINIYINSPG-------GDVDA--------------------GLAIYDAIRSSKAPV 77 (182)
T ss_dssp BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECE-------BCHHH--------------------HHHHHHHHHHSSSEE
T ss_pred cCHHHHHHHHHHHHHHhccCCCceEEEEEcCCC-------CccHH--------------------HHHHHHHHHhcCCCe
Confidence 78899999999887774332222 33345544 33322 123556788899999
Q ss_pred EEEECCcccchhhhhhhcCCe--EEEcCCeeEeccccccCCCCChhHHH---------------HHhhCCCch-HHHHHH
Q 013607 169 ISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSY---------------IAAKGPGGG-SVGAYL 230 (439)
Q Consensus 169 IAavnG~a~GgG~~lal~cD~--ria~e~a~f~~pe~~lGl~P~~G~~~---------------~l~r~~G~~-~~a~~l 230 (439)
++.+.|.|.+.|.-++++|+. |++.+++.|.+.+...+......-.. .+...-|.. ..-.++
T Consensus 78 ~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~ 157 (182)
T PF00574_consen 78 TTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEEL 157 (182)
T ss_dssp EEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHH
T ss_pred EEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 999999999999999999999 89999999998887655432111110 111111221 133444
Q ss_pred hhcCCCCCcHHHHHHcCCcccccCC
Q 013607 231 GMTGKRISTPSDALFAGLGTDYVPS 255 (439)
Q Consensus 231 ~ltG~~i~~A~eA~~~GLv~~vv~~ 255 (439)
+-....++ |+||+++||+|+|+..
T Consensus 158 ~~~~~~l~-a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 158 MDRDTWLS-AEEALEYGIIDEIIES 181 (182)
T ss_dssp CSSTEEEE-HHHHHHHTSSSEEESS
T ss_pred HhCCcccc-HHHHHHcCCCCEeccC
Confidence 44455677 9999999999999853
No 118
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=98.05 E-value=0.00013 Score=70.02 Aligned_cols=109 Identities=15% Similarity=0.173 Sum_probs=83.3
Q ss_pred cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHH
Q 013607 74 PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTA 153 (439)
Q Consensus 74 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 153 (439)
++.+..+.+ |- .+-++.+...++.++++...++..+ .++|...|+ ++. .
T Consensus 58 qe~~~~~gi--Pi-~~~I~i~dse~v~raI~~~~~~~~I-dLii~TpGG-------~v~--------------------A 106 (285)
T PF01972_consen 58 QERVSFLGI--PI-YRYIDIDDSEFVLRAIREAPKDKPI-DLIIHTPGG-------LVD--------------------A 106 (285)
T ss_pred ccccceecc--cc-ceeEcHhhHHHHHHHHHhcCCCCce-EEEEECCCC-------cHH--------------------H
Confidence 344444444 32 3678999999999999988877655 344555442 221 1
Q ss_pred HHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhH
Q 013607 154 EYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGF 213 (439)
Q Consensus 154 ~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~ 213 (439)
-.++...+...+.|+++.|+.+|+.||.-+|++||-++|.+.+.+|--+.++|-.|..+.
T Consensus 107 A~~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~si 166 (285)
T PF01972_consen 107 AEQIARALREHPAKVTVIVPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAASI 166 (285)
T ss_pred HHHHHHHHHhCCCCEEEEECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChHHH
Confidence 124556788899999999999999999999999999999999999999999999886544
No 119
>PRK11778 putative inner membrane peptidase; Provisional
Probab=98.04 E-value=3.5e-05 Score=76.78 Aligned_cols=156 Identities=13% Similarity=0.062 Sum_probs=94.6
Q ss_pred cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHH
Q 013607 74 PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTA 153 (439)
Q Consensus 74 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 153 (439)
.+.|++|.|+.+=..+ -...+.+++...+.....+ .+|||.-..|+.--.|.++ .
T Consensus 89 ~~~v~VI~~~G~I~~~-~~~~l~e~i~a~l~~A~~~---~aVvLridSpGG~v~~s~~---a------------------ 143 (330)
T PRK11778 89 KPRLFVLDFKGDIDAS-EVESLREEITAILAVAKPG---DEVLLRLESPGGVVHGYGL---A------------------ 143 (330)
T ss_pred CCeEEEEEEEEEECCC-cchhhHHHHHHHHHhccCC---CeEEEEEeCCCCchhHHHH---H------------------
Confidence 4679999998653211 1223445666666555433 4677764433221111111 0
Q ss_pred HHHHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHH------------------
Q 013607 154 EYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY------------------ 215 (439)
Q Consensus 154 ~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~------------------ 215 (439)
...+.++....||+|+.+++.|..||..++++||.+++.+.+.++.-.+-.. .|......
T Consensus 144 -~~~l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~-~~~~~~lLeKlGI~~evi~aG~yK~a 221 (330)
T PRK11778 144 -ASQLQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQ-IPNFHRLLKKHDIDVELHTAGEYKRT 221 (330)
T ss_pred -HHHHHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeee-ccCHHHHHHHCCCceEEEEecCccCC
Confidence 0113346678899999999999999999999999999999887775544211 12221110
Q ss_pred -------------------------H---HhhCCCchHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHH
Q 013607 216 -------------------------I---AAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLG 259 (439)
Q Consensus 216 -------------------------~---l~r~~G~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~ 259 (439)
+ ..+--+ . ...+-+.+|+.++ |++|++.||||++...+++.
T Consensus 222 ~~pf~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~-~-l~~~~va~G~v~~-g~~Al~~GLVD~Ig~~dd~i 290 (330)
T PRK11778 222 LTLFGENTEEGREKFREELEETHQLFKDFVQRYRP-Q-LDIDKVATGEHWY-GQQALELGLVDEIQTSDDYL 290 (330)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-c-CCHHHHHhCCCcC-HHHHHHCCCCCcCCCHHHHH
Confidence 0 001001 1 1233456899999 99999999999998765543
No 120
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.03 E-value=6.2e-05 Score=70.04 Aligned_cols=138 Identities=16% Similarity=0.072 Sum_probs=88.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEE--EeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCCc
Q 013607 90 AMNLDMDIKYKSFLDEWESDPRVKCVLI--EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP 167 (439)
Q Consensus 90 al~~~m~~eL~~~l~~~~~d~~vr~vVl--tg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP 167 (439)
.++..+...+.+.|..++..+..+.|+| .+.| +++.. ...++..|...+.|
T Consensus 31 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG-------G~v~a--------------------g~aI~d~i~~~~~~ 83 (197)
T PRK14512 31 EINKDLSELFQEKILLLEALDSKKPIFVYIDSEG-------GDIDA--------------------GFAIFNMIRFVKPK 83 (197)
T ss_pred EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC-------CCHHH--------------------HHHHHHHHHhCCCC
Confidence 3667888999998888776222333333 4444 33321 11345567788999
Q ss_pred EEEEECCcccchhhhhhhcCCe--EEEcCCeeEeccccccCCCCChhHHH---------------HHhhCCCch-HHHHH
Q 013607 168 YISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSY---------------IAAKGPGGG-SVGAY 229 (439)
Q Consensus 168 vIAavnG~a~GgG~~lal~cD~--ria~e~a~f~~pe~~lGl~P~~G~~~---------------~l~r~~G~~-~~a~~ 229 (439)
|++.+.|.|.+.|.-++++||- |++.+++.|.+....-|+.....-.. ...+.-|.. .....
T Consensus 84 V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~ 163 (197)
T PRK14512 84 VFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEK 163 (197)
T ss_pred EEEEEEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence 9999999999999999999985 99999998876544322211111000 111122321 12333
Q ss_pred HhhcCCCCCcHHHHHHcCCcccccCC
Q 013607 230 LGMTGKRISTPSDALFAGLGTDYVPS 255 (439)
Q Consensus 230 l~ltG~~i~~A~eA~~~GLv~~vv~~ 255 (439)
++-....++ |+||+++||+|+|++.
T Consensus 164 ~~~~d~~lt-a~EA~~yGliD~I~~~ 188 (197)
T PRK14512 164 DTDRDFWLD-SSSAVKYGLVFEVVET 188 (197)
T ss_pred hhhcCcccC-HHHHHHcCCccEeecC
Confidence 444456788 9999999999999975
No 121
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.97 E-value=8.5e-05 Score=74.26 Aligned_cols=137 Identities=16% Similarity=0.090 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEECCc
Q 013607 96 DIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGV 175 (439)
Q Consensus 96 ~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~ 175 (439)
.+.+.+.|+.+..|+.+++|+|.=..| |+.... ....++.+.++..-. ||++.|+++
T Consensus 82 ~~~~~~~l~~~~~~~~vk~vvL~inSP-----GG~v~a-----------------s~~i~~~l~~l~~~~-PV~v~v~~~ 138 (317)
T COG0616 82 GDDIEEILRAARADPSVKAVVLRINSP-----GGSVVA-----------------SELIARALKRLRAKK-PVVVSVGGY 138 (317)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEECc-----CCchhH-----------------HHHHHHHHHHHhhcC-CEEEEECCe
Confidence 556677788888899999998853222 222211 112223444455445 999999999
Q ss_pred ccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHH----------------------------------------
Q 013607 176 TMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY---------------------------------------- 215 (439)
Q Consensus 176 a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~---------------------------------------- 215 (439)
|..||..++++||.++|++.+..|--.+..+ .|......
T Consensus 139 AASGGY~IA~aAd~I~a~p~si~GSIGVi~~-~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~ 217 (317)
T COG0616 139 AASGGYYIALAADKIVADPSSITGSIGVISG-APNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDET 217 (317)
T ss_pred ecchhhhhhccCCEEEecCCceeeeceeEEe-cCCHHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998775444443 22222111
Q ss_pred ------HHh-hCCCchHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCH
Q 013607 216 ------IAA-KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNL 258 (439)
Q Consensus 216 ------~l~-r~~G~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l 258 (439)
.+. ...... ....-+.+|+-++ +++|++.||||++...++.
T Consensus 218 y~~F~~~V~~~R~~~~-~~~~~~a~g~v~~-g~~A~~~gLVDelg~~~~a 265 (317)
T COG0616 218 YDEFVDKVAEGRGLSD-EAVDKLATGRVWT-GQQALELGLVDELGGLDDA 265 (317)
T ss_pred HHHHHHHHHhcCCCCh-hHHHHHhccceec-HHHhhhcCCchhcCCHHHH
Confidence 000 011111 2234567899999 9999999999999864443
No 122
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=97.93 E-value=0.00012 Score=68.28 Aligned_cols=138 Identities=11% Similarity=0.053 Sum_probs=93.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEE--EEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCCc
Q 013607 90 AMNLDMDIKYKSFLDEWESDPRVKCV--LIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP 167 (439)
Q Consensus 90 al~~~m~~eL~~~l~~~~~d~~vr~v--Vltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP 167 (439)
.++.++..++...|-.++.++..+-| .|.+.| +|+.. ...++..|...+.|
T Consensus 38 ~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpG-------G~v~~--------------------g~aIyd~m~~~~~~ 90 (200)
T CHL00028 38 EVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPG-------GSVIS--------------------GLAIYDTMQFVKPD 90 (200)
T ss_pred eecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCC-------cchhh--------------------HHHHHHHHHhcCCC
Confidence 48899999999999988754333433 334544 22211 12355578889999
Q ss_pred EEEEECCcccchhhhhhhcCC--eEEEcCCeeEeccccccCCCCChhHHH-----------------HHhhCCCch-HHH
Q 013607 168 YISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGFSY-----------------IAAKGPGGG-SVG 227 (439)
Q Consensus 168 vIAavnG~a~GgG~~lal~cD--~ria~e~a~f~~pe~~lGl~P~~G~~~-----------------~l~r~~G~~-~~a 227 (439)
|...+.|.|.+.|.-|++++| -|++.++++|.+.....|+.-+- .+. .+.+.-|.. ...
T Consensus 91 V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~-a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i 169 (200)
T CHL00028 91 VHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQ-ASEFVLEAEELLKLRETITRVYAQRTGKPLWVI 169 (200)
T ss_pred EEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 999999999999999999999 69999999998877655522111 111 111111221 123
Q ss_pred HHHhhcCCCCCcHHHHHHcCCcccccCCC
Q 013607 228 AYLGMTGKRISTPSDALFAGLGTDYVPSG 256 (439)
Q Consensus 228 ~~l~ltG~~i~~A~eA~~~GLv~~vv~~~ 256 (439)
.+++-....++ |+||+++||||+|+.+.
T Consensus 170 ~~~~~r~~~lt-a~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 170 SEDMERDVFMS-ATEAKAYGIVDLVAVNN 197 (200)
T ss_pred HHHhhcCccCC-HHHHHHcCCCcEEeecC
Confidence 44444556688 99999999999998653
No 123
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=97.89 E-value=0.00017 Score=66.84 Aligned_cols=137 Identities=15% Similarity=0.060 Sum_probs=88.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEE--EeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCCc
Q 013607 90 AMNLDMDIKYKSFLDEWESDPRVKCVLI--EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP 167 (439)
Q Consensus 90 al~~~m~~eL~~~l~~~~~d~~vr~vVl--tg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP 167 (439)
.++..+..++...|..++.++..+-|.| .+.| +|+.. ...++..|..++.|
T Consensus 34 ~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpG-------G~v~~--------------------g~~I~d~l~~~~~~ 86 (191)
T TIGR00493 34 EVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPG-------GSITA--------------------GLAIYDTMQFIKPD 86 (191)
T ss_pred EEChHHHHHHHHHHHHhhccCCCCCEEEEEECCC-------CCHHH--------------------HHHHHHHHHhcCCC
Confidence 3667788888888888876544343433 3433 34321 11344467777778
Q ss_pred EEEEECCcccchhhhhhhcCC--eEEEcCCeeEeccccccCCC---CChhH-H-----------HHHhhCCCch-HHHHH
Q 013607 168 YISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLF---PDVGF-S-----------YIAAKGPGGG-SVGAY 229 (439)
Q Consensus 168 vIAavnG~a~GgG~~lal~cD--~ria~e~a~f~~pe~~lGl~---P~~G~-~-----------~~l~r~~G~~-~~a~~ 229 (439)
+...+.|.|.+.|.-+++++| .|++.+++.|.+.+...|.. -+..- . ..+.+.-|.. ....+
T Consensus 87 v~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~ 166 (191)
T TIGR00493 87 VSTICIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEK 166 (191)
T ss_pred EEEEEEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 888889999999999998766 69999999998866543321 11110 0 0122222321 14445
Q ss_pred HhhcCCCCCcHHHHHHcCCcccccC
Q 013607 230 LGMTGKRISTPSDALFAGLGTDYVP 254 (439)
Q Consensus 230 l~ltG~~i~~A~eA~~~GLv~~vv~ 254 (439)
++-.+..++ |+||+++||+|+++.
T Consensus 167 ~~~~~~~lt-a~EA~~~GliD~ii~ 190 (191)
T TIGR00493 167 DTERDFFMS-AEEAKEYGLIDSVLT 190 (191)
T ss_pred HhhCCccCc-HHHHHHcCCccEEec
Confidence 555677788 999999999999974
No 124
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=97.80 E-value=0.0013 Score=64.07 Aligned_cols=152 Identities=15% Similarity=0.078 Sum_probs=93.8
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcC----CCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHH
Q 013607 77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESD----PRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFT 152 (439)
Q Consensus 77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d----~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 152 (439)
|.++-.+.-=..-+++......+..+++.+.+| ..+-+|.|.-+| ++ .+.+-.. ....+ .
T Consensus 61 v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSg-Ga-----RlqEg~~---------~L~~~-a 124 (274)
T TIGR03133 61 VVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTG-GV-----RLQEANA---------GLIAI-A 124 (274)
T ss_pred EEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCC-Cc-----ChhhhHH---------HHHHH-H
Confidence 555555554455688888889999999888752 123456665444 22 3322111 00111 1
Q ss_pred HHHHHHHHHHhCCCcEEEEECCc--ccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCch-HHHHH
Q 013607 153 AEYSLICKISEYKKPYISLMDGV--TMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG-SVGAY 229 (439)
Q Consensus 153 ~~~~l~~~l~~~~kPvIAavnG~--a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~-~~a~~ 229 (439)
..+..+..+... .|+|+.|-|. |.||+..++.+||++||++++.+++.. ........|.. --..+
T Consensus 125 ~i~~~~~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aG-----------P~VIe~~~G~e~~~~~d 192 (274)
T TIGR03133 125 EIMRAILDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSG-----------PEVIEQEAGVEEFDSRD 192 (274)
T ss_pred HHHHHHHHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccC-----------HHHHHHhcCCCccCHHH
Confidence 112223334444 9999999999 899999999999999999988777621 11122222310 02344
Q ss_pred HhhcCCCCCcHHHHHHcCCcccccCCCC
Q 013607 230 LGMTGKRISTPSDALFAGLGTDYVPSGN 257 (439)
Q Consensus 230 l~ltG~~i~~A~eA~~~GLv~~vv~~~~ 257 (439)
-.|..+.+. +......|++|.+++++.
T Consensus 193 ~~l~~~~lG-G~~~~~sG~~D~~v~dd~ 219 (274)
T TIGR03133 193 RALVWRTTG-GKHRFLSGDADVLVEDDV 219 (274)
T ss_pred hcccccccc-hHhHhhcccceEEeCCHH
Confidence 455566676 677888999999998743
No 125
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=97.67 E-value=0.00051 Score=63.81 Aligned_cols=139 Identities=14% Similarity=0.031 Sum_probs=90.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEE--EEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCCc
Q 013607 90 AMNLDMDIKYKSFLDEWESDPRVKCV--LIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP 167 (439)
Q Consensus 90 al~~~m~~eL~~~l~~~~~d~~vr~v--Vltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP 167 (439)
.++.++..++...|..++.+...+-| .|-+.| +|+.. ...++..|..++.|
T Consensus 33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpG-------G~v~~--------------------g~aIyd~m~~~~~~ 85 (196)
T PRK12551 33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPG-------GSVYD--------------------GLGIFDTMQHVKPD 85 (196)
T ss_pred eecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCC-------cchhh--------------------HHHHHHHHHhcCCC
Confidence 48899999999999988754322333 334444 23221 11345567788899
Q ss_pred EEEEECCcccchhhhhhhcCCe--EEEcCCeeEeccccccCCCCChhHHH---------------HHhhCCCch-HHHHH
Q 013607 168 YISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSY---------------IAAKGPGGG-SVGAY 229 (439)
Q Consensus 168 vIAavnG~a~GgG~~lal~cD~--ria~e~a~f~~pe~~lGl~P~~G~~~---------------~l~r~~G~~-~~a~~ 229 (439)
|...+.|.|.+.|.-|++++|- |++.++++|.+....-|..-...-.. .+.+.-|.. ....+
T Consensus 86 V~t~~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~ 165 (196)
T PRK12551 86 VHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQE 165 (196)
T ss_pred EEEEEEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 9999999999999999999985 88999999887665433211110000 111222321 02333
Q ss_pred HhhcCCCCCcHHHHHHcCCcccccCCC
Q 013607 230 LGMTGKRISTPSDALFAGLGTDYVPSG 256 (439)
Q Consensus 230 l~ltG~~i~~A~eA~~~GLv~~vv~~~ 256 (439)
++-....++ |+||+++||+|+|++..
T Consensus 166 ~~~rd~~ms-a~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 166 DTDRDFFMS-PSEAVEYGLIDLVIDKR 191 (196)
T ss_pred HhhcCcCCC-HHHHHHcCCCcEEeccC
Confidence 444455677 99999999999999764
No 126
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.63 E-value=0.00063 Score=64.27 Aligned_cols=138 Identities=11% Similarity=0.009 Sum_probs=89.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcC---CCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCC
Q 013607 89 NAMNLDMDIKYKSFLDEWESD---PRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYK 165 (439)
Q Consensus 89 Nal~~~m~~eL~~~l~~~~~d---~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 165 (439)
-.++..+...+...|..++.. ..+.+. |-+.|+ ..-+| ..++..|...+
T Consensus 61 ~~Idd~~a~~i~aqLl~L~~~~~~~~I~ly-INSpGG-sv~aG--------------------------laIyd~m~~~~ 112 (221)
T PRK14514 61 TQIDDYTANTIQAQLLYLDSVDPGKDISIY-INSPGG-SVYAG--------------------------LGIYDTMQFIS 112 (221)
T ss_pred CEEcHHHHHHHHHHHHHHhccCCCCCEEEE-EECCCc-chhhH--------------------------HHHHHHHHhcC
Confidence 347888888888877766642 233333 355552 21111 12445778889
Q ss_pred CcEEEEECCcccchhhhhhhcCCe--EEEcCCeeEeccccccCCCCChhHHH---------------HHhhCCCch-HHH
Q 013607 166 KPYISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSY---------------IAAKGPGGG-SVG 227 (439)
Q Consensus 166 kPvIAavnG~a~GgG~~lal~cD~--ria~e~a~f~~pe~~lGl~P~~G~~~---------------~l~r~~G~~-~~a 227 (439)
-||...+.|.|.+.|.-|++++|. |++.+++.|.+....-|......-.. .+.+.-|.. ...
T Consensus 113 ~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I 192 (221)
T PRK14514 113 SDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKV 192 (221)
T ss_pred CCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 999999999999999999999996 89999999887665433321111000 111222421 123
Q ss_pred HHHhhcCCCCCcHHHHHHcCCcccccCC
Q 013607 228 AYLGMTGKRISTPSDALFAGLGTDYVPS 255 (439)
Q Consensus 228 ~~l~ltG~~i~~A~eA~~~GLv~~vv~~ 255 (439)
.+.+-....++ |+||+++||||+|+..
T Consensus 193 ~~~~~rd~wmt-A~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 193 WADSDRDYWMT-AQEAKEYGMIDEVLIK 219 (221)
T ss_pred HHHhhcCccCC-HHHHHHcCCccEEeec
Confidence 33444556788 9999999999999864
No 127
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.61 E-value=0.00085 Score=62.50 Aligned_cols=139 Identities=14% Similarity=0.087 Sum_probs=92.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCce--EEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCC
Q 013607 89 NAMNLDMDIKYKSFLDEWESDPRVK--CVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKK 166 (439)
Q Consensus 89 Nal~~~m~~eL~~~l~~~~~d~~vr--~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~k 166 (439)
-.++.++...+...|..++..+.-+ -|-|.+.| +|+.. ...++..|...+-
T Consensus 34 ~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpG-------G~v~~--------------------GlaIyd~m~~~~~ 86 (201)
T PRK14513 34 TPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPG-------GEVYA--------------------GLAIYDTMRYIKA 86 (201)
T ss_pred CEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCC-------Cchhh--------------------HHHHHHHHHhcCC
Confidence 3588889999988888887643222 22335554 23221 1235557888999
Q ss_pred cEEEEECCcccchhhhhhhcCCe--EEEcCCeeEeccccccCCCCChhHHH-----------------HHhhCCCch-HH
Q 013607 167 PYISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSY-----------------IAAKGPGGG-SV 226 (439)
Q Consensus 167 PvIAavnG~a~GgG~~lal~cD~--ria~e~a~f~~pe~~lGl~P~~G~~~-----------------~l~r~~G~~-~~ 226 (439)
||...+.|.|.+.|.-|++++|- |++.+++++-+.....|+. +.... .+.+.-|.. ..
T Consensus 87 ~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~ 164 (201)
T PRK14513 87 PVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEK 164 (201)
T ss_pred CEEEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999995 9999999988776654431 11111 111222321 02
Q ss_pred HHHHhhcCCCCCcHHHHHHcCCcccccCCCC
Q 013607 227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGN 257 (439)
Q Consensus 227 a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~ 257 (439)
-.+++-....++ |+||+++||||+|+++..
T Consensus 165 I~~~~~rd~~ms-a~EA~eyGliD~I~~~~~ 194 (201)
T PRK14513 165 LLRDMERDYFMS-PEEAKAYGLIDSVIEPTR 194 (201)
T ss_pred HHHHhccCcccC-HHHHHHcCCCcEEeccCC
Confidence 233344445677 999999999999997644
No 128
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=97.53 E-value=0.0014 Score=64.64 Aligned_cols=152 Identities=15% Similarity=0.111 Sum_probs=90.6
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC----CceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHH
Q 013607 77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDP----RVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFT 152 (439)
Q Consensus 77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~----~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 152 (439)
|.++-.+.-=..-+++......+..+++.+.++. -+-+|+|.-+| ++ .+.+-.. ....+ .
T Consensus 70 v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSG-Ga-----RlqEg~~---------~L~~~-a 133 (301)
T PRK07189 70 VVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETG-GV-----RLQEANA---------GLAAI-A 133 (301)
T ss_pred EEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC-Cc-----CccchHH---------HHHHH-H
Confidence 5566666555567899999999999999887764 14566665444 22 2322111 00111 1
Q ss_pred HHHHHHHHHHhCCCcEEEEECCc--ccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCc-hHHHHH
Q 013607 153 AEYSLICKISEYKKPYISLMDGV--TMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG-GSVGAY 229 (439)
Q Consensus 153 ~~~~l~~~l~~~~kPvIAavnG~--a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~-~~~a~~ 229 (439)
..+..+..+... .|+|++|.|. |.||+...+.+||++||++++.+++... ...-...|. .--..+
T Consensus 134 ~i~~~~~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~iglaGP-----------~VIe~~~G~e~~d~~d 201 (301)
T PRK07189 134 EIMRAIVDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLSGP-----------EVIEQEAGVEEFDSRD 201 (301)
T ss_pred HHHHHHHHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEeccCH-----------HHHHHhcCCcccCHHH
Confidence 112223334444 9999999999 9999999999999999999887776211 111111221 001223
Q ss_pred HhhcCCCCCcHHHHHHcCCcccccCCCC
Q 013607 230 LGMTGKRISTPSDALFAGLGTDYVPSGN 257 (439)
Q Consensus 230 l~ltG~~i~~A~eA~~~GLv~~vv~~~~ 257 (439)
..+..+.+. +......|++|.+++++.
T Consensus 202 ~~~vw~~lG-G~h~~~sG~~D~~v~dd~ 228 (301)
T PRK07189 202 RALVWRTTG-GKHRYLSGLADALVDDDV 228 (301)
T ss_pred hcccccccC-cceeeecccceEEeCCHH
Confidence 333333343 344455899999998653
No 129
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=97.36 E-value=0.0095 Score=57.02 Aligned_cols=158 Identities=10% Similarity=0.036 Sum_probs=94.2
Q ss_pred CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHH-hcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHH
Q 013607 75 NGVAVITLDRPKALNAMNLDMDIKYKSFLDEW-ESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTA 153 (439)
Q Consensus 75 ~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~-~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 153 (439)
+.-..|.=|+|.. .++.+-...+...+... +.+..+-+|.|.=.. .|-.|..-.+... .+....
T Consensus 31 G~~V~vIa~~~~~--~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtp--G~~~g~~aE~~G~-----------~~a~A~ 95 (238)
T TIGR03134 31 GGKVTVIGVVPDA--EVGLDEALALAQAVLDVIEADDKRPIVVLVDTP--SQAYGRREELLGI-----------NQALAH 95 (238)
T ss_pred CEEEEEEEECCCC--cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCC--CCCCCHHHHHHHH-----------HHHHHH
Confidence 3333344445543 78888888888888885 555677777776552 3555543322211 112222
Q ss_pred HHHHHHHHHhCCCcEEEEECCcccchhhhhh-hcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHHHHHHhh
Q 013607 154 EYSLICKISEYKKPYISLMDGVTMGFGIGIS-GHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM 232 (439)
Q Consensus 154 ~~~l~~~l~~~~kPvIAavnG~a~GgG~~la-l~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~a~~l~l 232 (439)
+...+......+.|+|+.|-|.+.|||+.-. +.+|.++|.+++. ++..++-|++..+-+-.. ...++.-
T Consensus 96 l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~-------i~vm~~e~aa~I~~~~~~---~~~e~a~ 165 (238)
T TIGR03134 96 LAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAM-------VHVMDLESMARVTKRSVE---ELEALAK 165 (238)
T ss_pred HHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcE-------EEecCHHHHHHHHccCHh---HHHHHHH
Confidence 2233334445669999999999998876444 3477777665554 455555555555444332 3444433
Q ss_pred cCC--CCCcHHHHHHcCCcccccCCCCH
Q 013607 233 TGK--RISTPSDALFAGLGTDYVPSGNL 258 (439)
Q Consensus 233 tG~--~i~~A~eA~~~GLv~~vv~~~~l 258 (439)
+-. ..+ ...+.++|+||+|+++.+-
T Consensus 166 ~~~~~a~~-~~~~~~~G~vd~vi~~~~~ 192 (238)
T TIGR03134 166 SSPVFAPG-IENFVKLGGVHALLDVADA 192 (238)
T ss_pred hhhhhccC-HHHHHhCCCccEEeCCCCc
Confidence 322 244 6789999999999987664
No 130
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.34 E-value=0.0071 Score=59.39 Aligned_cols=152 Identities=16% Similarity=0.160 Sum_probs=96.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHH
Q 013607 77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS 156 (439)
Q Consensus 77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (439)
|+++..|-.-..-+++....+.+.++++.+.+. .+-+|.|..+| ++ -+.+-. ..+. -+.....
T Consensus 122 V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSg-Ga-----RmqEg~---------~sL~-~~ak~~~ 184 (285)
T TIGR00515 122 IVVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASG-GA-----RMQEAL---------LSLM-QMAKTSA 184 (285)
T ss_pred EEEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-Cc-----ccccch---------hHHH-hHHHHHH
Confidence 454444444456789999999999999988765 46777776655 33 111100 0001 1111222
Q ss_pred HHHHHHhCCCcEEEEECCcccchhhh-hhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHHHHHHhhcCC
Q 013607 157 LICKISEYKKPYISLMDGVTMGFGIG-ISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK 235 (439)
Q Consensus 157 l~~~l~~~~kPvIAavnG~a~GgG~~-lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~a~~l~ltG~ 235 (439)
.+.++.....|.|+++-|+|.||+.. +++.+|++||.+++.+++...+ .+...+|.. +. +
T Consensus 185 ~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------Vie~ti~e~-------lp-e 245 (285)
T TIGR00515 185 ALAKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR-----------VIEQTVREK-------LP-E 245 (285)
T ss_pred HHHHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH-----------HHHHHhcCc-------cc-h
Confidence 33456667899999999999999654 5579999999999888863322 122222221 11 3
Q ss_pred CCCcHHHHHHcCCcccccCCCCHHHHHHH
Q 013607 236 RISTPSDALFAGLGTDYVPSGNLGSLKEA 264 (439)
Q Consensus 236 ~i~~A~eA~~~GLv~~vv~~~~l~~~~~~ 264 (439)
.+.+++-+.+.|+||.||++.++......
T Consensus 246 ~~q~ae~~~~~G~vD~iv~~~~~r~~l~~ 274 (285)
T TIGR00515 246 GFQTSEFLLEHGAIDMIVHRPEMKKTLAS 274 (285)
T ss_pred hcCCHHHHHhCCCCcEEECcHHHHHHHHH
Confidence 34336667789999999999887654333
No 131
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.31 E-value=0.0092 Score=58.84 Aligned_cols=151 Identities=16% Similarity=0.127 Sum_probs=94.2
Q ss_pred EEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHH
Q 013607 78 AVITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS 156 (439)
Q Consensus 78 ~~Itlnrp~-~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (439)
..|.-|.|. ..-+++....+.+.++++.+... .+-+|.|.-+| ++ .+.+ .. .. +. .+.....
T Consensus 123 V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsg-Ga-----rmqE---gi-----~s-L~-~~ak~~~ 185 (292)
T PRK05654 123 VVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASG-GA-----RMQE---GL-----LS-LM-QMAKTSA 185 (292)
T ss_pred EEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-Cc-----chhh---hh-----hH-HH-hHHHHHH
Confidence 334444443 56789999999999999998876 46777776554 22 2221 00 00 00 1112223
Q ss_pred HHHHHHhCCCcEEEEECCcccchhhh-hhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHHHHHHhhcCC
Q 013607 157 LICKISEYKKPYISLMDGVTMGFGIG-ISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK 235 (439)
Q Consensus 157 l~~~l~~~~kPvIAavnG~a~GgG~~-lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~a~~l~ltG~ 235 (439)
.+.++.....|.|+++-|+|.||+.. +++.+|++||.+++.+++-..+ .+...+|. ++ . +
T Consensus 186 a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------vie~~~~e-----~l--p-e 246 (292)
T PRK05654 186 ALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPR-----------VIEQTVRE-----KL--P-E 246 (292)
T ss_pred HHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHH-----------HHHhhhhh-----hh--h-h
Confidence 34455667899999999999999654 5677999999988877763221 11111121 11 1 2
Q ss_pred CCCcHHHHHHcCCcccccCCCCHHHHHHH
Q 013607 236 RISTPSDALFAGLGTDYVPSGNLGSLKEA 264 (439)
Q Consensus 236 ~i~~A~eA~~~GLv~~vv~~~~l~~~~~~ 264 (439)
.+.+++-+.+.|+||.|+++.++......
T Consensus 247 ~~~~ae~~~~~G~vD~Vv~~~e~r~~l~~ 275 (292)
T PRK05654 247 GFQRAEFLLEHGAIDMIVHRRELRDTLAS 275 (292)
T ss_pred hhcCHHHHHhCCCCcEEECHHHHHHHHHH
Confidence 24336777889999999999887654333
No 132
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=97.31 E-value=0.00018 Score=64.28 Aligned_cols=97 Identities=12% Similarity=0.101 Sum_probs=60.6
Q ss_pred HHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccc------------cCC---------CCChh-----HH
Q 013607 161 ISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG------------IGL---------FPDVG-----FS 214 (439)
Q Consensus 161 l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~------------lGl---------~P~~G-----~~ 214 (439)
.....|||||.++|.+..+|+.|+.+||-+++.+.+.++...+. +|+ ....+ .+
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s 81 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS 81 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence 35689999999999999999999999999999998877765542 222 11111 00
Q ss_pred H----------------HH-----hhCCCchHHHHHHhhcCCCCCcHHHHHHcCCcccccCCCCHHH
Q 013607 215 Y----------------IA-----AKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGS 260 (439)
Q Consensus 215 ~----------------~l-----~r~~G~~~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~~~~l~~ 260 (439)
- ++ .|-+.. ...+-+..|..++ |++|++.||||++-..+++..
T Consensus 82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~--~~v~~~~~~~~~~-~~~A~~~GLiD~i~~~~~~~~ 145 (154)
T PF01343_consen 82 EEERENLQELLDELYDQFVNDVAEGRGLSP--DDVEEIADGGVFT-AQQALELGLIDEIGTFDEAIA 145 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS-H--HHHHCHHCCHEEE-HHHHHHTTSSSEETSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCH--HHHHHHHhhcccc-HHHHHHcCchhhcCCHHHHHH
Confidence 0 00 011111 1223357899999 999999999999986655543
No 133
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=97.09 E-value=0.0053 Score=66.41 Aligned_cols=86 Identities=10% Similarity=0.041 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEEC
Q 013607 94 DMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMD 173 (439)
Q Consensus 94 ~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavn 173 (439)
..+.++.++|+.+..|+.|++|||.-.+. .|+++..+ ...++.+..+....|||||..+
T Consensus 76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~~----~g~~~~~~-----------------~ei~~ai~~fk~sgKpVvA~~~ 134 (584)
T TIGR00705 76 ISLFDIVNAIRQAADDRRIEGLVFDLSNF----SGWDSPHL-----------------VEIGSALSEFKDSGKPVYAYGT 134 (584)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEccCC----CCCCHHHH-----------------HHHHHHHHHHHhcCCeEEEEEc
Confidence 35779999999999999999999986431 13333221 1222344456667899999988
Q ss_pred CcccchhhhhhhcCCeEEEcCCeeEecc
Q 013607 174 GVTMGFGIGISGHGRYRIVTEKTLLAMP 201 (439)
Q Consensus 174 G~a~GgG~~lal~cD~ria~e~a~f~~p 201 (439)
+++ -+|+-|+.+||-+++.+.+.+++.
T Consensus 135 ~~~-s~~YylAs~AD~I~~~p~G~v~~~ 161 (584)
T TIGR00705 135 NYS-QGQYYLASFADEIILNPMGSVDLH 161 (584)
T ss_pred ccc-chhhhhhhhCCEEEECCCceEEee
Confidence 875 689999999999999998877553
No 134
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=97.06 E-value=0.019 Score=56.40 Aligned_cols=153 Identities=16% Similarity=0.105 Sum_probs=93.4
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHH
Q 013607 77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS 156 (439)
Q Consensus 77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (439)
|+++..+--=..-++.....+.+.++++.+.+.. +-+|++..+| + +-+.+=.. . +..+.+ ...
T Consensus 135 v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~r-lPlV~l~~SG-G-----ARmQEg~~--------s-L~qmak-~sa 197 (296)
T CHL00174 135 VALGVMDFQFMGGSMGSVVGEKITRLIEYATNES-LPLIIVCASG-G-----ARMQEGSL--------S-LMQMAK-ISS 197 (296)
T ss_pred EEEEEECCcccccCcCHHHHHHHHHHHHHHHHcC-CCEEEEECCC-C-----ccccccch--------h-hhhhHH-HHH
Confidence 5555555443567899999999999999887754 5677776655 2 22222110 0 000111 101
Q ss_pred HHHH-HHhCCCcEEEEECCcccchhhhh-hhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHHHHHHhhcC
Q 013607 157 LICK-ISEYKKPYISLMDGVTMGFGIGI-SGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTG 234 (439)
Q Consensus 157 l~~~-l~~~~kPvIAavnG~a~GgG~~l-al~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~a~~l~ltG 234 (439)
.+.. ...-..|.|+++.|+|.||+... ++.||++|+.+++.+++... ......+|.. +.
T Consensus 198 a~~~~~~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGP-----------rVIe~t~ge~-------lp- 258 (296)
T CHL00174 198 ALYDYQSNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGK-----------RVIEQTLNKT-------VP- 258 (296)
T ss_pred HHHHHHHcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCH-----------HHHHHhcCCc-------CC-
Confidence 1122 22467999999999999998776 56699999988887765321 1112222221 22
Q ss_pred CCCCcHHHHHHcCCcccccCCCCHHHHHHHH
Q 013607 235 KRISTPSDALFAGLGTDYVPSGNLGSLKEAL 265 (439)
Q Consensus 235 ~~i~~A~eA~~~GLv~~vv~~~~l~~~~~~l 265 (439)
+.+.+|+-.++.|+||.+|+..++......|
T Consensus 259 e~fq~ae~l~~~G~vD~iV~r~~lr~~l~~l 289 (296)
T CHL00174 259 EGSQAAEYLFDKGLFDLIVPRNLLKGVLSEL 289 (296)
T ss_pred cccccHHHHHhCcCceEEEcHHHHHHHHHHH
Confidence 3344367788999999999988876544333
No 135
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=96.98 E-value=0.014 Score=55.04 Aligned_cols=144 Identities=17% Similarity=0.131 Sum_probs=89.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCC---CceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCC
Q 013607 90 AMNLDMDIKYKSFLDEWESDP---RVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKK 166 (439)
Q Consensus 90 al~~~m~~eL~~~l~~~~~d~---~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~k 166 (439)
.++.++.+.+...|-.++.++ .+. +-|-+.| +...+|-=+... .....++..|...+-
T Consensus 48 ~~~~~~a~~iiaqLl~L~~~~~~k~I~-lyINSpG-Gsv~~G~~iG~v-----------------~~glaIyD~m~~ik~ 108 (222)
T PRK12552 48 QVGMDVTELIIAQLLYLEFDDPEKPIY-FYINSTG-TSWYTGDAIGFE-----------------TEAFAICDTMRYIKP 108 (222)
T ss_pred chhHhHHHHHHHHHHHHhccCCCCCEE-EEEeCCC-CCcccccccccc-----------------ccHHHHHHHHHhcCC
Confidence 455558888888887776543 333 3345666 344444100000 011235557778888
Q ss_pred cEEEEECCcccchhhhhhhcCCe--EEEcCCeeEeccccccCCCCChhHHH-----------------HHhhCCCch-HH
Q 013607 167 PYISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSY-----------------IAAKGPGGG-SV 226 (439)
Q Consensus 167 PvIAavnG~a~GgG~~lal~cD~--ria~e~a~f~~pe~~lGl~P~~G~~~-----------------~l~r~~G~~-~~ 226 (439)
||...+-|.|.+.+.-|++++|- |++.++++|-+.....|.. + -.+- .+.+.-|.. ..
T Consensus 109 ~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~-G-~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~ 186 (222)
T PRK12552 109 PVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR-G-QATDIQIRAKEVLHNKRTMLEILSRNTGQTVEK 186 (222)
T ss_pred CeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc-c-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999999995 8999999988776654432 1 1111 111111221 01
Q ss_pred HHHHhhcCCCCCcHHHHHHcCCcccccCC
Q 013607 227 GAYLGMTGKRISTPSDALFAGLGTDYVPS 255 (439)
Q Consensus 227 a~~l~ltG~~i~~A~eA~~~GLv~~vv~~ 255 (439)
-.+++-....++ |+||+++||||+|+.+
T Consensus 187 I~~d~~rd~wms-A~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 187 LSKDTDRMFYLT-PQEAKEYGLIDRVLES 214 (222)
T ss_pred HHHHhcCCCcCC-HHHHHHcCCCcEEecc
Confidence 122222334577 9999999999999965
No 136
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.018 Score=59.06 Aligned_cols=149 Identities=15% Similarity=0.092 Sum_probs=104.2
Q ss_pred cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHH
Q 013607 74 PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTA 153 (439)
Q Consensus 74 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 153 (439)
++.|.+|.++ +.+++.+.+.+.+.++.++++.. .+|||.=.-|+. +...
T Consensus 25 ~~~v~vi~i~-----g~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldTPGG-------------------------l~~s 73 (436)
T COG1030 25 EKKVYVIEID-----GAIDPASADYLQRALQSAEEENA-AAVVLELDTPGG-------------------------LLDS 73 (436)
T ss_pred CCeEEEEEec-----CccCHHHHHHHHHHHHHHHhCCC-cEEEEEecCCCc-------------------------hHHH
Confidence 4568888887 67999999999999999998753 444443221211 1223
Q ss_pred HHHHHHHHHhCCCcEEEEECC---cccchhhhhhhcCCeEEEcCCeeEeccc-cccCC-CC-Chh-HHHH------HhhC
Q 013607 154 EYSLICKISEYKKPYISLMDG---VTMGFGIGISGHGRYRIVTEKTLLAMPE-NGIGL-FP-DVG-FSYI------AAKG 220 (439)
Q Consensus 154 ~~~l~~~l~~~~kPvIAavnG---~a~GgG~~lal~cD~ria~e~a~f~~pe-~~lGl-~P-~~G-~~~~------l~r~ 220 (439)
..++.+.+.+.+.||+..|.= +|..+|.-++++||+..|.+.+.+|--. +..|- .+ ... .+.. +.+.
T Consensus 74 m~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~ 153 (436)
T COG1030 74 MRQIVRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEE 153 (436)
T ss_pred HHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHH
Confidence 345777899999998888753 5999999999999999999999998644 33331 11 111 1111 2233
Q ss_pred CCch-HHHHHHhhcCCCCCcHHHHHHcCCcccccC
Q 013607 221 PGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVP 254 (439)
Q Consensus 221 ~G~~-~~a~~l~ltG~~i~~A~eA~~~GLv~~vv~ 254 (439)
-|+. ..+.+++.....++ ++||++.|++|-+..
T Consensus 154 ~gRN~~~ae~~v~~~~~l~-a~eA~~~~vid~iA~ 187 (436)
T COG1030 154 RGRNPTWAERFVTENLSLT-AEEALRQGVIDLIAR 187 (436)
T ss_pred cCCChHHHHHHhhhccCCC-hhHHHhcCccccccC
Confidence 3432 15667788889999 999999999998874
No 137
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=96.63 E-value=0.025 Score=52.35 Aligned_cols=98 Identities=14% Similarity=0.076 Sum_probs=65.8
Q ss_pred HHHHHHhCCCcEEEEECCcccchhhhhhhcCCeE--EEcCCeeEeccccccCCCCChhHHH----------------HHh
Q 013607 157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYR--IVTEKTLLAMPENGIGLFPDVGFSY----------------IAA 218 (439)
Q Consensus 157 l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~r--ia~e~a~f~~pe~~lGl~P~~G~~~----------------~l~ 218 (439)
++..|...+.||...+-|.|...|.-|++++|.. ++.+++++-+.... |.+-|...=. .+.
T Consensus 77 Iydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~a~Di~i~A~ei~~~~~~l~~i~a 155 (200)
T COG0740 77 IYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQASDIEIHAREILKIKERLNRIYA 155 (200)
T ss_pred HHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788999999999999999999999999985 88888887765554 3222111100 111
Q ss_pred hCCCchHHHH--HHhhcCCCCCcHHHHHHcCCcccccCCCC
Q 013607 219 KGPGGGSVGA--YLGMTGKRISTPSDALFAGLGTDYVPSGN 257 (439)
Q Consensus 219 r~~G~~~~a~--~l~ltG~~i~~A~eA~~~GLv~~vv~~~~ 257 (439)
..-|.. ... ...-....++ |+||+++||+|+|+...+
T Consensus 156 ~~TGq~-~e~i~~d~drd~~ms-a~eA~~yGLiD~V~~~~~ 194 (200)
T COG0740 156 EHTGQT-LEKIEKDTDRDTWMS-AEEAKEYGLIDKVIESRE 194 (200)
T ss_pred HHcCCC-HHHHHHhhcccccCC-HHHHHHcCCcceeccccc
Confidence 222332 221 2222345678 999999999999997654
No 138
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=96.56 E-value=0.064 Score=57.17 Aligned_cols=156 Identities=13% Similarity=0.123 Sum_probs=96.6
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHH
Q 013607 80 ITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLI 158 (439)
Q Consensus 80 Itlnrp~-~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (439)
|.=|+|. ..-+++..-.+...++++.+++. .+-+|.|.-.+ .|..|.+-.. ........+++
T Consensus 319 vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~--G~~~g~~~E~--------------~g~~~~~a~~~ 381 (512)
T TIGR01117 319 IIANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVP--GFLPGVNQEY--------------GGIIRHGAKVL 381 (512)
T ss_pred EEEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCc--CccccHHHHH--------------HHHHHHHHHHH
Confidence 3344443 34579999999999999988764 46677776553 2655543211 11233444677
Q ss_pred HHHHhCCCcEEEEECCcccchhhhhhh----cCCeEEEcCCeeEeccccccCCCCChhHHHHHh-hCCC--c-hHH--HH
Q 013607 159 CKISEYKKPYISLMDGVTMGFGIGISG----HGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAA-KGPG--G-GSV--GA 228 (439)
Q Consensus 159 ~~l~~~~kPvIAavnG~a~GgG~~lal----~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~-r~~G--~-~~~--a~ 228 (439)
..+.....|.|+.|-|.+.|||..-.. .+|+++|.+++.++ +.++-++...+- +.+. . ... ..
T Consensus 382 ~a~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~-------v~~pe~a~~i~~~~~l~~~~~~~~~~~~ 454 (512)
T TIGR01117 382 YAYSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIA-------VMGPAGAANIIFRKDIKEAKDPAATRKQ 454 (512)
T ss_pred HHHHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEe-------ecCHHHHHHHHhhhhcccccCHHHHHHH
Confidence 788889999999999999887654332 28888877776665 443333333332 2111 0 001 11
Q ss_pred HHh-hcCCCCCcHHHHHHcCCcccccCCCCHHH
Q 013607 229 YLG-MTGKRISTPSDALFAGLGTDYVPSGNLGS 260 (439)
Q Consensus 229 ~l~-ltG~~i~~A~eA~~~GLv~~vv~~~~l~~ 260 (439)
.+. ..-+..+ +..+.+.|+||.|+++.+...
T Consensus 455 ~~~~~~~~~~~-~~~~a~~g~vD~VI~P~~tR~ 486 (512)
T TIGR01117 455 KIAEYREEFAN-PYKAAARGYVDDVIEPKQTRP 486 (512)
T ss_pred HHHHHHHhhcC-HHHHHhcCCCCeeEChHHHHH
Confidence 111 1122345 888999999999999988764
No 139
>PRK10949 protease 4; Provisional
Probab=96.21 E-value=0.05 Score=59.22 Aligned_cols=86 Identities=7% Similarity=0.056 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEEC
Q 013607 94 DMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMD 173 (439)
Q Consensus 94 ~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavn 173 (439)
-.+.++.++|+.+..|+.|++|||.-.++. |..+.. .....+.+..+....|||||..+
T Consensus 95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~g----G~~~a~-----------------~~eI~~ai~~fk~sGKpVvA~~~ 153 (618)
T PRK10949 95 NSLFDIVNTIRQAKDDRNITGIVLDLKNFA----GADQPS-----------------MQYIGKALREFRDSGKPVYAVGD 153 (618)
T ss_pred ccHHHHHHHHHHHhcCCCceEEEEEeCCCC----CccHHH-----------------HHHHHHHHHHHHHhCCeEEEEec
Confidence 345689999999999999999999875421 222111 11122344456677899999654
Q ss_pred CcccchhhhhhhcCCeEEEcCCeeEecc
Q 013607 174 GVTMGFGIGISGHGRYRIVTEKTLLAMP 201 (439)
Q Consensus 174 G~a~GgG~~lal~cD~ria~e~a~f~~p 201 (439)
.+ --+|.-||.+||-+++.+.+.+++.
T Consensus 154 ~~-~s~~YyLASaAD~I~l~P~G~v~~~ 180 (618)
T PRK10949 154 SY-SQGQYYLASFANKIYLSPQGVVDLH 180 (618)
T ss_pred Cc-cchhhhhhhhCCEEEECCCceEEEe
Confidence 44 4679999999999999887666543
No 140
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=96.18 E-value=0.087 Score=56.72 Aligned_cols=110 Identities=11% Similarity=0.010 Sum_probs=69.4
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHH
Q 013607 77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS 156 (439)
Q Consensus 77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (439)
|.++.-+.-=+.-+++....+.+.++++.+.+.. +-+|.|.-+| +++-.+ ....+. ....+ ...+.
T Consensus 131 V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~~-lPlV~l~DSg-Garl~~-q~e~~~----------~~~~~-g~if~ 196 (569)
T PLN02820 131 CMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCR-LPCIYLVDSG-GANLPR-QAEVFP----------DRDHF-GRIFY 196 (569)
T ss_pred EEEEEECCCccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCC-CcCCcc-cccccc----------hHhHH-HHHHH
Confidence 4444444333568899999999999999988764 5566665444 343211 000000 00011 11122
Q ss_pred HHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCC-eeEec
Q 013607 157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAM 200 (439)
Q Consensus 157 l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~-a~f~~ 200 (439)
....+.....|.|++|-|.|.|||.....+||++|++++ +.+.+
T Consensus 197 ~~~~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~ 241 (569)
T PLN02820 197 NQARMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFL 241 (569)
T ss_pred HHHHHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEe
Confidence 223355567999999999999999999999999999875 54543
No 141
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=96.01 E-value=0.07 Score=56.74 Aligned_cols=141 Identities=18% Similarity=0.188 Sum_probs=91.3
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHH
Q 013607 77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS 156 (439)
Q Consensus 77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (439)
|.++..+.--...+++......+..+++.+.++. +-+|.|.-+| ++| + ++.+-.... . .+...+.
T Consensus 59 v~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~-~P~v~l~dsg-Ga~--~-r~~eg~~~l---------~-~~g~i~~ 123 (493)
T PF01039_consen 59 VVVIAQDFTVLGGSVGEVHGEKIARAIELALENG-LPLVYLVDSG-GAF--L-RMQEGVESL---------M-GMGRIFR 123 (493)
T ss_dssp EEEEEEETTSGGGTBSHHHHHHHHHHHHHHHHHT-EEEEEEEEES-SBC--G-GGGGHHHHH---------H-HHHHHHH
T ss_pred EEEEEeccceecCCCCcccceeeehHHHHHHHcC-CCcEEecccc-ccc--c-ccchhhhhh---------h-hhHHHHH
Confidence 4444444444567899999999999999988774 4455554333 221 1 444433211 1 1122233
Q ss_pred HHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCC-eeEeccccccCCCCChhHHHHHhhCCCchHHHHHHhhcCC
Q 013607 157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK 235 (439)
Q Consensus 157 l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~-a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~a~~l~ltG~ 235 (439)
-...+.. ..|+|+++.|.|.|||..++..||++|+.++ +.+++. |+. . .+ ..+|+
T Consensus 124 ~~~~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~--------------------GP~-v-v~-~~~Ge 179 (493)
T PF01039_consen 124 AIARLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLA--------------------GPR-V-VE-SATGE 179 (493)
T ss_dssp HHHHHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------THH-H-HH-HHHSS
T ss_pred HHHHHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEec--------------------ccc-c-cc-cccCc
Confidence 3445556 9999999999999999999999999999987 777643 211 1 11 23577
Q ss_pred CCCcHHHH-------HHcCCcccccCCCC
Q 013607 236 RISTPSDA-------LFAGLGTDYVPSGN 257 (439)
Q Consensus 236 ~i~~A~eA-------~~~GLv~~vv~~~~ 257 (439)
.++ .++. ...|.+|.++++++
T Consensus 180 ~~~-~~~lgG~~~h~~~sG~~d~v~~de~ 207 (493)
T PF01039_consen 180 EVD-SEELGGADVHAAKSGVVDYVVDDEE 207 (493)
T ss_dssp CTS-HHHHHBHHHHHHTSSSSSEEESSHH
T ss_pred ccc-chhhhhhhhhcccCCCceEEEechH
Confidence 777 5543 36799999998653
No 142
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=95.99 E-value=0.041 Score=53.40 Aligned_cols=87 Identities=17% Similarity=0.164 Sum_probs=66.2
Q ss_pred HHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHHHHHHhhcCCC
Q 013607 157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKR 236 (439)
Q Consensus 157 l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~a~~l~ltG~~ 236 (439)
-+..+.+++.|+||.|=|---+||+--...+|.+.|-++++|+. +.|.+.++.++..- +++.+. -....
T Consensus 180 nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD~----~ka~eA-Ae~mk 248 (317)
T COG0825 180 NLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKDA----SKAKEA-AEAMK 248 (317)
T ss_pred HHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcCh----hhhHHH-HHHcC
Confidence 44568899999999999998777776666799999999999984 34555555444322 245544 34568
Q ss_pred CCcHHHHHHcCCcccccCC
Q 013607 237 ISTPSDALFAGLGTDYVPS 255 (439)
Q Consensus 237 i~~A~eA~~~GLv~~vv~~ 255 (439)
|+ |++.+++|+||.|+|.
T Consensus 249 it-a~dLk~lgiID~II~E 266 (317)
T COG0825 249 IT-AHDLKELGIIDGIIPE 266 (317)
T ss_pred CC-HHHHHhCCCcceeccC
Confidence 98 9999999999999974
No 143
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=95.56 E-value=0.14 Score=54.53 Aligned_cols=106 Identities=17% Similarity=0.071 Sum_probs=65.6
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHH
Q 013607 77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS 156 (439)
Q Consensus 77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (439)
|.++..+-.=..-+++....+.+.++++.+.+.. +-+|.|.-+| ++ .+.+-.. ....+.+.+..
T Consensus 84 v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSg-Ga-----rm~eg~~---------~l~~~~~~~~~ 147 (512)
T TIGR01117 84 VYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSG-GA-----RIQEAVD---------ALKGYGDIFYR 147 (512)
T ss_pred EEEEEECCcccccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCC-CC-----Cccccch---------hhhhHHHHHHH
Confidence 4444444333567899999999999999888765 4455554443 23 2221100 00111111111
Q ss_pred HHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCe-eEec
Q 013607 157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT-LLAM 200 (439)
Q Consensus 157 l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a-~f~~ 200 (439)
. ....-..|.|+++.|.|.||+......|||+|+.+++ .+++
T Consensus 148 -~-~~~s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~ 190 (512)
T TIGR01117 148 -N-TIASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFI 190 (512)
T ss_pred -H-HHHcCCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEe
Confidence 1 2233458999999999999998888899999999964 4443
No 144
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=95.09 E-value=0.62 Score=45.04 Aligned_cols=148 Identities=17% Similarity=0.131 Sum_probs=94.5
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHH
Q 013607 77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS 156 (439)
Q Consensus 77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (439)
|+...++--=-.-+|..-.-+.+.++++.+-.+ .+.+|+++.+|+ +-+.|-.- . .--+.....
T Consensus 124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~-k~P~v~f~aSGG------ARMQEg~l--------S--LMQMaktsa 186 (294)
T COG0777 124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIED-KLPLVLFSASGG------ARMQEGIL--------S--LMQMAKTSA 186 (294)
T ss_pred EEEEEEeccccccchhHHHHHHHHHHHHHHHHh-CCCEEEEecCcc------hhHhHHHH--------H--HHHHHHHHH
Confidence 455555533334678888888899999888765 478999988873 22222100 0 000111223
Q ss_pred HHHHHHhCCCcEEEEECCcccchh-hhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHHHHHHhhcCC
Q 013607 157 LICKISEYKKPYISLMDGVTMGFG-IGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK 235 (439)
Q Consensus 157 l~~~l~~~~kPvIAavnG~a~GgG-~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~a~~l~ltG~ 235 (439)
.+.++..-..|.|+.+..++.||- +.+++..|+.||.++|.+||...++ .-..+|.. + =+
T Consensus 187 Al~~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRV-----------IEQTire~------L--Pe 247 (294)
T COG0777 187 ALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRV-----------IEQTIREK------L--PE 247 (294)
T ss_pred HHHHHHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcchh-----------hhhhhccc------C--Cc
Confidence 455677889999999999999875 6788999999998888777653321 11111111 1 11
Q ss_pred CCCcHHHHHHcCCcccccCCCCHHH
Q 013607 236 RISTPSDALFAGLGTDYVPSGNLGS 260 (439)
Q Consensus 236 ~i~~A~eA~~~GLv~~vv~~~~l~~ 260 (439)
-+..++-.++.|+||.||+..++..
T Consensus 248 gfQ~aEfLlehG~iD~iv~R~elr~ 272 (294)
T COG0777 248 GFQTAEFLLEHGMIDMIVHRDELRT 272 (294)
T ss_pred chhhHHHHHHcCCceeeecHHHHHH
Confidence 1333778889999999999877664
No 145
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=93.25 E-value=0.14 Score=52.94 Aligned_cols=68 Identities=12% Similarity=0.105 Sum_probs=52.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHhhhcCCCccccCCHHHHHHHHHHHHHhhCCCChHHHHHHHH---HhCCCCCCCCCC
Q 013607 336 EALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAV---LVDKDQNPKWNP 412 (439)
Q Consensus 336 ~~l~~l~~~sp~al~~~k~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~d~~egv~a~---l~~K~r~P~w~~ 412 (439)
+.+++++..+|.++..+|+.++... ......+..+......++.++|+.|++.+| + +| +.|.|--
T Consensus 228 ~~~~~i~~~~p~av~~~k~~~~~~~----------~~~~~~l~~~~~~i~~~f~~~d~~ei~~al~~~~-~k-r~~~wa~ 295 (401)
T PLN02157 228 EQLKKLLTDDPSVVESCLEKCAEVA----------HPEKTGVIRRIDLLEKCFSHDTVEEIIDSLEIEA-GR-RKDTWCI 295 (401)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccc----------CCcchhHHHHHHHHHHHhcCCCHHHHHHHHHhhh-cc-cchHHHH
Confidence 3444788899999999999987542 234566777888888999999999999999 6 66 6788865
Q ss_pred CCc
Q 013607 413 ASL 415 (439)
Q Consensus 413 ~~~ 415 (439)
+.+
T Consensus 296 ~~~ 298 (401)
T PLN02157 296 TTL 298 (401)
T ss_pred HHH
Confidence 443
No 146
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=92.11 E-value=0.56 Score=49.64 Aligned_cols=96 Identities=16% Similarity=0.040 Sum_probs=64.3
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHH
Q 013607 83 DRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKIS 162 (439)
Q Consensus 83 nrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 162 (439)
+-+-+.-++..-..+.+..+.+.+.++....+.+..|.| +.+.+=. .....+ ...+....++.
T Consensus 99 D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsgG-------ari~~~v---------~~l~g~-g~iF~~~a~~S 161 (526)
T COG4799 99 DFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLNDSGG-------ARIQEGV---------PSLAGY-GRIFYRNARAS 161 (526)
T ss_pred cCceecccccccccchHHHHHHHHHHcCCCEEEEEcccc-------cccccCc---------cccccc-hHHHHHHHHhc
Confidence 345567888888888888888888876655555555544 2222110 011111 22222233444
Q ss_pred hCCCcEEEEECCcccchhhhhhhcCCeEEEcCCe
Q 013607 163 EYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196 (439)
Q Consensus 163 ~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a 196 (439)
.. .|.|++|-|.|.|||+-+...||++|+.++.
T Consensus 162 g~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~ 194 (526)
T COG4799 162 GV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQ 194 (526)
T ss_pred cC-CCEEEEEEecCcccccccccccceEEEEcCC
Confidence 45 9999999999999999999999999999984
No 147
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=90.53 E-value=2.9 Score=45.24 Aligned_cols=146 Identities=12% Similarity=0.138 Sum_probs=93.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCCcE
Q 013607 89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY 168 (439)
Q Consensus 89 Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPv 168 (439)
-+++.+-.+...+.++.+++ -.+-+|.|.-.. .|..|.+-.. ....+...+++..+.....|.
T Consensus 380 g~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~p--Gf~~G~~~E~--------------~G~~~~~a~l~~A~a~~~VP~ 442 (569)
T PLN02820 380 GILFTESALKGAHFIELCAQ-RGIPLLFLQNIT--GFMVGSRSEA--------------SGIAKAGAKMVMAVACAKVPK 442 (569)
T ss_pred CccCHHHHHHHHHHHHHHHh-cCCCEEEEEECC--CCCCCHHHHH--------------hhHHHHHHHHHHHHHhCCCCE
Confidence 45888899999999888876 457777776552 4766654332 113455567888899999999
Q ss_pred EEEECCcccchhhhhhh----cCCeEEEcCCeeEeccccccCCCCChhHHHHHhhC-C------C----chHH-H--HHH
Q 013607 169 ISLMDGVTMGFGIGISG----HGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG-P------G----GGSV-G--AYL 230 (439)
Q Consensus 169 IAavnG~a~GgG~~lal----~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~-~------G----~~~~-a--~~l 230 (439)
|++|=|.+.|+|..-.. ..|++++. |...+|+.++-|+...+.+. + | .... + .++
T Consensus 443 isvi~g~a~G~g~~aM~g~~~~~d~~~aw-------p~A~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~ 515 (569)
T PLN02820 443 ITIIVGGSFGAGNYGMCGRAYSPNFLFMW-------PNARIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKT 515 (569)
T ss_pred EEEEECCcchHHHHHhcCcCCCCCEEEEC-------CCCeEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHH
Confidence 99999999998765443 45565555 55555666656665555331 1 1 0000 0 001
Q ss_pred -hhcCCCCCcHHHHHHcCCcccccCCCCHH
Q 013607 231 -GMTGKRISTPSDALFAGLGTDYVPSGNLG 259 (439)
Q Consensus 231 -~ltG~~i~~A~eA~~~GLv~~vv~~~~l~ 259 (439)
-..-+..+ +-.|-+.|++|.|+++.+..
T Consensus 516 ~~~~~~~~~-p~~aa~~~~vD~VIdP~dTR 544 (569)
T PLN02820 516 VEAYEREAN-PYYSTARLWDDGVIDPADTR 544 (569)
T ss_pred HHHHHHhCC-HHHHHHcCCcCcccCHHHHH
Confidence 11122345 66788899999999987654
No 148
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=84.72 E-value=4.1 Score=43.39 Aligned_cols=156 Identities=15% Similarity=0.173 Sum_probs=90.7
Q ss_pred EEEcCCCCCC-CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHH
Q 013607 80 ITLDRPKALN-AMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLI 158 (439)
Q Consensus 80 Itlnrp~~~N-al~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (439)
|.=|+|.... +++.+-.....+.++.++. -++-+|.|.-. ..|..|-+-.. ....+...+++
T Consensus 298 iian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dt--pGf~~g~~~E~--------------~g~~~~ga~~~ 360 (493)
T PF01039_consen 298 IIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDT--PGFMPGPEAER--------------AGIIRAGARLL 360 (493)
T ss_dssp EEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEE--CEB--SHHHHH--------------TTHHHHHHHHH
T ss_pred EEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeec--ccccccchhhh--------------cchHHHHHHHH
Confidence 4445654322 7999999999999998887 45778888765 25666543221 11344555788
Q ss_pred HHHHhCCCcEEEEECCcccchhhhhhhcC----CeEEEcCCeeEeccccccCCCCChhHHHHHhhC-C------Cc--hH
Q 013607 159 CKISEYKKPYISLMDGVTMGFGIGISGHG----RYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG-P------GG--GS 225 (439)
Q Consensus 159 ~~l~~~~kPvIAavnG~a~GgG~~lal~c----D~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~-~------G~--~~ 225 (439)
.++..+..|.|..|-|.+.|||....... |+++|.+++.+ |+.++-|+...+-+. . |. ..
T Consensus 361 ~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~-------~vm~~e~a~~i~~~~~~~~~~~~~~~~~~ 433 (493)
T PF01039_consen 361 YALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEI-------GVMGPEGAASILYRDELEAAEAEGADPEA 433 (493)
T ss_dssp HHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EE-------ESS-HHHHHHHHTHHHHHHSCHCCHSHHH
T ss_pred HHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhccee-------eecChhhhheeeehhhhhhhhcccchhHH
Confidence 89999999999999999999877444443 66655555555 455545554433221 0 00 00
Q ss_pred -HHHHHhhcCCC-CCcHHHHHHcCCcccccCCCCHHH
Q 013607 226 -VGAYLGMTGKR-ISTPSDALFAGLGTDYVPSGNLGS 260 (439)
Q Consensus 226 -~a~~l~ltG~~-i~~A~eA~~~GLv~~vv~~~~l~~ 260 (439)
....+--.-+. .+ +..+...|++|.++++.+...
T Consensus 434 ~~~~~~~~~~~~~~~-~~~~a~~~~~D~ii~p~~tR~ 469 (493)
T PF01039_consen 434 QRAEKIAEYEDELSS-PYRAASRGYVDDIIDPAETRK 469 (493)
T ss_dssp HHHHHHHHHHHHHSS-HHHHHHTTSSSEESSGGGHHH
T ss_pred HHHHHHHHHHHhcCC-HHHHHhcCCCCCccCHHHHHH
Confidence 01111111112 45 788899999999999887653
No 149
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=79.98 E-value=13 Score=35.75 Aligned_cols=134 Identities=15% Similarity=0.100 Sum_probs=72.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCCcEE
Q 013607 90 AMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYI 169 (439)
Q Consensus 90 al~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvI 169 (439)
.++.++-+.+...|-.++..+.-|=|.+.=.+ .|+++.. .+.++..+..++-||=
T Consensus 100 ~Idd~va~~viaqlL~Ld~ed~~K~I~lyINS-----PGG~vta--------------------glAIYDtMq~ik~~V~ 154 (275)
T KOG0840|consen 100 PIDDDVANLVIAQLLYLDSEDPKKPIYLYINS-----PGGSVTA--------------------GLAIYDTMQYIKPDVS 154 (275)
T ss_pred cCcHHHHHHHHHHHHHhhccCCCCCeEEEEeC-----CCCccch--------------------hhhHHHHHHhhCCCce
Confidence 47888888888888888776666666654322 2333311 1123335566667766
Q ss_pred EEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCC-CChhH----HHHHhh---CCCchH--HHHHHhhcCC----
Q 013607 170 SLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLF-PDVGF----SYIAAK---GPGGGS--VGAYLGMTGK---- 235 (439)
Q Consensus 170 AavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~-P~~G~----~~~l~r---~~G~~~--~a~~l~ltG~---- 235 (439)
..+=|.|.+-|.-|..+ .++.-+|++|..++=+- |-+|. +-...+ ++-... .-.+.--||+
T Consensus 155 Tic~G~Aas~aalLLaa-----G~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~ 229 (275)
T KOG0840|consen 155 TICVGLAASMAALLLAA-----GAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEV 229 (275)
T ss_pred eeehhhHHhHHHHHHhc-----CCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 66667776655544433 24555677776665542 32221 111100 000000 0011112443
Q ss_pred ---------CCCcHHHHHHcCCcccccC
Q 013607 236 ---------RISTPSDALFAGLGTDYVP 254 (439)
Q Consensus 236 ---------~i~~A~eA~~~GLv~~vv~ 254 (439)
-++ |+||++.||+|.|+.
T Consensus 230 i~~d~dRd~fms-a~EA~eyGliD~v~~ 256 (275)
T KOG0840|consen 230 IEKDMDRDRFMS-AEEAKEYGLIDKVID 256 (275)
T ss_pred HHhhhcccccCC-HHHHHHhcchhhhhc
Confidence 467 999999999999986
No 150
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=77.71 E-value=4.5 Score=40.30 Aligned_cols=80 Identities=16% Similarity=0.094 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHHhcCC---CceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCCcE
Q 013607 92 NLDMDIKYKSFLDEWESDP---RVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY 168 (439)
Q Consensus 92 ~~~m~~eL~~~l~~~~~d~---~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPv 168 (439)
+.....++..+|+.+.... .+-+|||. .||+++ -||..|.+ ..+.++++.++.||
T Consensus 53 G~~A~~~I~~al~~~~~~~~~~~~Dviii~-RGGGs~---eDL~~FN~------------------e~varai~~~~~Pv 110 (319)
T PF02601_consen 53 GEGAAASIVSALRKANEMGQADDFDVIIII-RGGGSI---EDLWAFND------------------EEVARAIAASPIPV 110 (319)
T ss_pred ccchHHHHHHHHHHHHhccccccccEEEEe-cCCCCh---HHhcccCh------------------HHHHHHHHhCCCCE
Confidence 3445788888998888664 56777773 332222 13322221 24777999999999
Q ss_pred EEEECCcccchhhhhh-hcCCeEEEcCCe
Q 013607 169 ISLMDGVTMGFGIGIS-GHGRYRIVTEKT 196 (439)
Q Consensus 169 IAavnG~a~GgG~~la-l~cD~ria~e~a 196 (439)
|++| ||-.= ..|+ +.||+|..|+.+
T Consensus 111 isaI-GHe~D--~ti~D~vAd~ra~TPta 136 (319)
T PF02601_consen 111 ISAI-GHETD--FTIADFVADLRAPTPTA 136 (319)
T ss_pred EEec-CCCCC--chHHHHHHHhhCCCHHH
Confidence 9977 22211 1222 556777666544
No 151
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=77.06 E-value=4.2 Score=42.51 Aligned_cols=81 Identities=15% Similarity=0.072 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCCcEEE
Q 013607 91 MNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYIS 170 (439)
Q Consensus 91 l~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIA 170 (439)
-......++..+|+.++..+++-+|||. .|++++ -||..|.+ ..+.++++.+|.|||+
T Consensus 167 QG~~a~~~i~~al~~~~~~~~~dviii~-RGGGs~---eDL~~Fn~------------------e~~~rai~~~~~Pvis 224 (432)
T TIGR00237 167 QGEGAVQSIVESIELANTKNECDVLIVG-RGGGSL---EDLWSFND------------------EKVARAIFLSKIPIIS 224 (432)
T ss_pred cCccHHHHHHHHHHHhhcCCCCCEEEEe-cCCCCH---HHhhhcCc------------------HHHHHHHHcCCCCEEE
Confidence 3445578888888888876667777773 332333 13322211 2477799999999999
Q ss_pred EECCcccchhhhhh-hcCCeEEEcCCe
Q 013607 171 LMDGVTMGFGIGIS-GHGRYRIVTEKT 196 (439)
Q Consensus 171 avnG~a~GgG~~la-l~cD~ria~e~a 196 (439)
+| ||-. =+.|+ +.+|.|..|+.+
T Consensus 225 ~i-GHe~--D~ti~D~vAd~ra~TPta 248 (432)
T TIGR00237 225 AV-GHET--DFTISDFVADLRAPTPSA 248 (432)
T ss_pred ec-CcCC--CccHHHHhhhccCCCcHH
Confidence 77 2211 02222 557777776543
No 152
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=71.27 E-value=11 Score=36.85 Aligned_cols=52 Identities=21% Similarity=0.362 Sum_probs=34.1
Q ss_pred HHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccc
Q 013607 100 KSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTM 177 (439)
Q Consensus 100 ~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~ 177 (439)
.++|+.+++||..++||+-|.- |++-.+. .. +++.. ...+|||||.+-|.+.
T Consensus 189 id~L~~fe~Dp~T~~ivmiGEi------GG~aEe~------------AA-------~~i~~-~~~~KPVVa~iaG~ta 240 (293)
T COG0074 189 IDALEMFEADPETEAIVMIGEI------GGPAEEE------------AA-------EYIKA-NATRKPVVAYIAGRTA 240 (293)
T ss_pred HHHHHHHhcCccccEEEEEecC------CCcHHHH------------HH-------HHHHH-hccCCCEEEEEeccCC
Confidence 3788889999999999999872 1111111 11 12223 3355999999999866
No 153
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=68.89 E-value=7.7 Score=40.54 Aligned_cols=78 Identities=13% Similarity=0.125 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEE
Q 013607 93 LDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLM 172 (439)
Q Consensus 93 ~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav 172 (439)
.....++..+|+.++... +-+||| +.|++++ -||..|.+ ..+.++++.++.|||++|
T Consensus 175 ~~A~~~i~~al~~~~~~~-~Dviii-~RGGGS~---eDL~~Fn~------------------e~v~~ai~~~~~Pvis~I 231 (438)
T PRK00286 175 EGAAASIVAAIERANARG-EDVLIV-ARGGGSL---EDLWAFND------------------EAVARAIAASRIPVISAV 231 (438)
T ss_pred ccHHHHHHHHHHHhcCCC-CCEEEE-ecCCCCH---HHhhccCc------------------HHHHHHHHcCCCCEEEec
Confidence 445778888888887643 566666 3332322 13322221 247779999999999977
Q ss_pred CCcccchhhhhh-hcCCeEEEcCCe
Q 013607 173 DGVTMGFGIGIS-GHGRYRIVTEKT 196 (439)
Q Consensus 173 nG~a~GgG~~la-l~cD~ria~e~a 196 (439)
||-. =..|+ +.+|.|..|+.+
T Consensus 232 -GHE~--D~tl~D~vAd~ra~TPta 253 (438)
T PRK00286 232 -GHET--DFTIADFVADLRAPTPTA 253 (438)
T ss_pred -cCCC--CccHHHHhhhccCCChHH
Confidence 2211 01222 556777666544
No 154
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=68.01 E-value=8.4 Score=40.10 Aligned_cols=37 Identities=16% Similarity=0.110 Sum_probs=23.6
Q ss_pred HHHHHHHhCCCcEEEEECCcccchhhhhh-hcCCeEEEcCC
Q 013607 156 SLICKISEYKKPYISLMDGVTMGFGIGIS-GHGRYRIVTEK 195 (439)
Q Consensus 156 ~l~~~l~~~~kPvIAavnG~a~GgG~~la-l~cD~ria~e~ 195 (439)
.+.++++.++.|||++|- |-. =+.|+ +.+|+|-.|+.
T Consensus 216 ~vaRAi~~s~iPvISAVG-HEt--D~tL~DfVAD~RApTPT 253 (440)
T COG1570 216 IVARAIAASRIPVISAVG-HET--DFTLADFVADLRAPTPT 253 (440)
T ss_pred HHHHHHHhCCCCeEeecc-cCC--CccHHHhhhhccCCCch
Confidence 377899999999999872 211 12233 45666666654
No 155
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=66.43 E-value=41 Score=35.95 Aligned_cols=160 Identities=16% Similarity=0.157 Sum_probs=95.2
Q ss_pred EEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHH
Q 013607 77 VAVITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEY 155 (439)
Q Consensus 77 V~~Itlnrp~-~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 155 (439)
|++ .=|.|. ..-+|+.+-...-.+.++. ..-.++-.|.|.-. ..|.-|-|-.. ....+...
T Consensus 326 VGi-IANqp~~~~G~l~~~sa~KaArFI~~-cd~~~iPlv~L~d~--pGFm~G~~~E~--------------~giik~Ga 387 (526)
T COG4799 326 VGI-IANQPRHLGGVLDIDSADKAARFIRL-CDAFNIPLVFLVDT--PGFMPGTDQEY--------------GGIIKHGA 387 (526)
T ss_pred EEE-EecCccccccccchHHHHHHHHHHHh-hhccCCCeEEEeCC--CCCCCChhHHh--------------ChHHHhhh
Confidence 443 345554 4568999999999999954 44456888888765 46998876432 12445556
Q ss_pred HHHHHHHhCCCcEEEEECCcccchhhhhhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHh-hCCCchHH-HHH----
Q 013607 156 SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAA-KGPGGGSV-GAY---- 229 (439)
Q Consensus 156 ~l~~~l~~~~kPvIAavnG~a~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~-r~~G~~~~-a~~---- 229 (439)
.++.++....+|.|..|-|.+.|||......-.+ ..+-.|+.|..++|+.-+-|+.-.+- +.+..... ..+
T Consensus 388 kl~~A~aeatVPkitvI~rkayGga~~~M~~~~~---~~~~~~AwP~a~iaVMG~egAv~i~~~k~l~~~~~~~~~~~~~ 464 (526)
T COG4799 388 KLLYAVAEATVPKITVITRKAYGGAYYVMGGKAL---GPDFNYAWPTAEIAVMGPEGAVSILYRKELAAAERPEEREALL 464 (526)
T ss_pred HHHhhHhhccCCeEEEEecccccceeeeecCccC---CCceeEecCcceeeecCHHHHHHHHHHHHhhcccCchhHHHHH
Confidence 7888999999999999999999998654432211 14445555556666543344433332 21110000 000
Q ss_pred ---Hhhc-CCC-CCcHHHHHHcCCcccccCCCCH
Q 013607 230 ---LGMT-GKR-ISTPSDALFAGLGTDYVPSGNL 258 (439)
Q Consensus 230 ---l~lt-G~~-i~~A~eA~~~GLv~~vv~~~~l 258 (439)
+... -+. .. +--|.+.|++|.|+++.+.
T Consensus 465 ~~~~~~eY~~~~~~-p~~aa~r~~iD~vI~p~~t 497 (526)
T COG4799 465 RKQLIAEYEEQFSN-PYYAAERGYIDAVIDPADT 497 (526)
T ss_pred HHHHHHHHHHhccc-hHHHHHhCCCCcccCHHHH
Confidence 0000 111 22 4456677888888887554
No 156
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=65.26 E-value=14 Score=32.27 Aligned_cols=52 Identities=19% Similarity=0.279 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEECCcc
Q 013607 98 KYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVT 176 (439)
Q Consensus 98 eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a 176 (439)
.+.+.++.+.+||++++|++.-.+-+ | -+.+.+..++.... ||||+..-|..
T Consensus 41 ~~~d~l~~~~~D~~t~~I~ly~E~~~------d--------------------~~~f~~~~~~a~~~-KPVv~lk~Grt 92 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTRVIVLYLEGIG------D--------------------GRRFLEAARRAARR-KPVVVLKAGRT 92 (138)
T ss_dssp -HHHHHHHHCT-SS--EEEEEES--S---------------------------HHHHHHHHHHHCCC-S-EEEEE----
T ss_pred CHHHHHHHHhcCCCCCEEEEEccCCC------C--------------------HHHHHHHHHHHhcC-CCEEEEeCCCc
Confidence 46778888899999999999887510 1 11223344455555 99999999973
No 157
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=56.26 E-value=22 Score=35.55 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=16.8
Q ss_pred HHHHHHHHhcCCCceEEEEEeCC
Q 013607 99 YKSFLDEWESDPRVKCVLIEGSG 121 (439)
Q Consensus 99 L~~~l~~~~~d~~vr~vVltg~g 121 (439)
+.+.|+.+.+||++++|++.+.+
T Consensus 212 ~~D~L~~~~~Dp~T~~Ivl~~E~ 234 (317)
T PTZ00187 212 FIDCLKLFLNDPETEGIILIGEI 234 (317)
T ss_pred HHHHHHHHhhCCCccEEEEEEec
Confidence 45667777778888888887764
No 158
>PLN02522 ATP citrate (pro-S)-lyase
Probab=55.34 E-value=29 Score=37.97 Aligned_cols=52 Identities=17% Similarity=0.342 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCCceEEEEEeC-CCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccc
Q 013607 99 YKSFLDEWESDPRVKCVLIEGS-GPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTM 177 (439)
Q Consensus 99 L~~~l~~~~~d~~vr~vVltg~-g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a~ 177 (439)
+.+.|+.+++||++++|++.+. |.+ |= .++. +...... ..||||+.+-|.+-
T Consensus 210 ~~D~L~~~~~Dp~Tk~IvlygEiGg~------~e----------------~~f~----ea~~~a~-~~KPVVa~kaGrsa 262 (608)
T PLN02522 210 LSDHVLRFNNIPQIKMIVVLGELGGR------DE----------------YSLV----EALKQGK-VSKPVVAWVSGTCA 262 (608)
T ss_pred HHHHHHHHhcCCCCCEEEEEEecCch------hH----------------HHHH----HHHHHhc-CCCCEEEEeccCCC
Confidence 4566777778888888888877 521 00 1111 1222222 68999999999876
No 159
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=51.21 E-value=89 Score=32.72 Aligned_cols=150 Identities=13% Similarity=0.092 Sum_probs=97.0
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHH
Q 013607 80 ITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLI 158 (439)
Q Consensus 80 Itlnrp~-~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (439)
|.-|+|+ ..-.|..+.-....+.++...+ ..+-.|.|...+ + |-.|.+..... ..+....++
T Consensus 353 Ivgnn~kf~~G~L~s~sa~KgarfIe~c~q-~~IPLi~l~ni~-G-fm~g~~~e~~g--------------IaK~gAklv 415 (536)
T KOG0540|consen 353 IVGNNPKFAGGVLFSESAVKGARFIELCDQ-RNIPLIFLQNIT-G-FMVGRAAEAGG--------------IAKHGAKLV 415 (536)
T ss_pred EeccCchhcccccchhhhhhhHHHHHHHHh-cCCcEEEEEccC-C-ccccchhhhhc--------------hhhhhhhhh
Confidence 4446665 3467888888888888877665 457788888775 3 99998875432 122233567
Q ss_pred HHHHhCCCcEEEEECCcccchhhh---hhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhC-----CCchHHHHHH
Q 013607 159 CKISEYKKPYISLMDGVTMGFGIG---ISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG-----PGGGSVGAYL 230 (439)
Q Consensus 159 ~~l~~~~kPvIAavnG~a~GgG~~---lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~-----~G~~~~a~~l 230 (439)
.+...-..|-|..+-|.+.||-.. ..+.-||.++.++|++++-..+ ++.-.+.+. +...+...+.
T Consensus 416 ~a~a~akvpkITiit~~syGG~y~m~sr~~~gd~~yawP~A~IavmG~~-------~a~~Vi~q~~~e~a~~~~~~~~E~ 488 (536)
T KOG0540|consen 416 YAVACAKVPKITIITGGSYGGNYAMCSRGYSGDINYAWPNARIAVMGGK-------QAANVIFQITLEKAVALKAPYIEK 488 (536)
T ss_pred hhhhhccCceEEEEecCccCCcccccccccCCceeEEcccceeeecccc-------chhhhhhhhhhhhhhhhcchHHHH
Confidence 778888999999999999997655 4467788888888777754321 111122221 1111122333
Q ss_pred hhcCCCCCcHHHHHHcCCcccccCCCCHH
Q 013607 231 GMTGKRISTPSDALFAGLGTDYVPSGNLG 259 (439)
Q Consensus 231 ~ltG~~i~~A~eA~~~GLv~~vv~~~~l~ 259 (439)
. |.++. |...|++|.++++.+..
T Consensus 489 f--~npy~----a~~Rg~~D~II~p~~tR 511 (536)
T KOG0540|consen 489 F--GNPYY----AAARGWDDGIIDPSDTR 511 (536)
T ss_pred h--cCccH----HHHhhccccccChhHhh
Confidence 2 77776 35679999999987654
No 160
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=38.85 E-value=1.7e+02 Score=28.02 Aligned_cols=153 Identities=10% Similarity=-0.031 Sum_probs=83.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEE--EeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCC
Q 013607 88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLI--EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYK 165 (439)
Q Consensus 88 ~Nal~~~m~~eL~~~l~~~~~d~~vr~vVl--tg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 165 (439)
...+..+.--.|.+++.+.-.+..-|.||+ -..| ..++- -.|+. .+..++......+...+.-.
T Consensus 40 ~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~s-Qa~gr---reEll----------Gi~~alAhla~a~a~AR~~G 105 (234)
T PF06833_consen 40 HGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPS-QAYGR---REELL----------GINQALAHLAKAYALARLAG 105 (234)
T ss_pred CCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCc-cccch---HHHHh----------hHHHHHHHHHHHHHHHHHcC
Confidence 467887777777766654433222343333 2222 22210 01111 11234444445555667788
Q ss_pred CcEEEEECCcccchhhh-hhhcCCeEEEcCCeeEeccccccCCCCChhHHHHHhhCCCchHHHHHHhhcCCCC--CcHHH
Q 013607 166 KPYISLMDGVTMGFGIG-ISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRI--STPSD 242 (439)
Q Consensus 166 kPvIAavnG~a~GgG~~-lal~cD~ria~e~a~f~~pe~~lGl~P~~G~~~~l~r~~G~~~~a~~l~ltG~~i--~~A~e 242 (439)
-|||+.|-|.+++|||- -.+.+|-.||-+ ++++-..+-. +..+.+++. .. .-.++.-|--.| + .+-
T Consensus 106 HpvI~Lv~G~A~SGaFLA~GlqA~rl~AL~-------ga~i~vM~~~-s~ARVTk~~-ve-~Le~la~s~PvfA~g-i~n 174 (234)
T PF06833_consen 106 HPVIGLVYGKAMSGAFLAHGLQANRLIALP-------GAMIHVMGKP-SAARVTKRP-VE-ELEELAKSVPVFAPG-IEN 174 (234)
T ss_pred CCeEEEEecccccHHHHHHHHHhcchhcCC-------CCeeecCChH-HhHHHhhcC-HH-HHHHHhhcCCCcCCC-HHH
Confidence 99999999999998874 347788877755 3333322222 334455442 22 344454444333 3 556
Q ss_pred HHHcCCcccccCCCCHHHHHHHH
Q 013607 243 ALFAGLGTDYVPSGNLGSLKEAL 265 (439)
Q Consensus 243 A~~~GLv~~vv~~~~l~~~~~~l 265 (439)
-..+|.++++++.+..+....++
T Consensus 175 y~~lG~l~~l~~~~~~~~~~~~~ 197 (234)
T PF06833_consen 175 YAKLGALDELWDGDLADQPAEAL 197 (234)
T ss_pred HHHhccHHHHhcccccccccHHH
Confidence 67899999999854444333443
No 161
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=34.84 E-value=32 Score=36.16 Aligned_cols=84 Identities=21% Similarity=0.268 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhHhhhcCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEECCcc
Q 013607 97 IKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVT 176 (439)
Q Consensus 97 ~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAavnG~a 176 (439)
-.+.+.|+.+..|+++++|++...| + .| ..+| ....++... .||||+..-|..
T Consensus 189 ~~~~d~l~~l~~D~~t~~I~ly~E~---~---~~----------------~~~f----~~aa~~a~~-~KPVv~~k~Grs 241 (447)
T TIGR02717 189 IDESDLLEYLADDPDTKVILLYLEG---I---KD----------------GRKF----LKTAREISK-KKPIVVLKSGTS 241 (447)
T ss_pred CCHHHHHHHHhhCCCCCEEEEEecC---C---CC----------------HHHH----HHHHHHHcC-CCCEEEEecCCC
Confidence 3556777778888888888887764 1 00 0112 233344444 899999999987
Q ss_pred cchhhhhhhcCCeEEEcCCeeEeccccccCCC
Q 013607 177 MGFGIGISGHGRYRIVTEKTLLAMPENGIGLF 208 (439)
Q Consensus 177 ~GgG~~lal~cD~ria~e~a~f~~pe~~lGl~ 208 (439)
- .|...+...-=-++.++..|.--.-+.|++
T Consensus 242 ~-~g~~aa~sHtgalag~~~~~~a~~~~~Gv~ 272 (447)
T TIGR02717 242 E-AGAKAASSHTGALAGSDEAYDAAFKQAGVI 272 (447)
T ss_pred h-hhhhhhhhccccccChHHHHHHHHHHCCeE
Confidence 4 344333322223344444444444455553
No 162
>smart00250 PLEC Plectin repeat.
Probab=34.52 E-value=33 Score=22.66 Aligned_cols=18 Identities=39% Similarity=0.508 Sum_probs=16.8
Q ss_pred cCCCCCcHHHHHHcCCccc
Q 013607 233 TGKRISTPSDALFAGLGTD 251 (439)
Q Consensus 233 tG~~i~~A~eA~~~GLv~~ 251 (439)
||++++ -.||++.||++.
T Consensus 18 t~~~ls-v~eA~~~glid~ 35 (38)
T smart00250 18 TGQKLS-VEEALRRGLIDP 35 (38)
T ss_pred CCCCcC-HHHHHHcCCCCc
Confidence 899999 999999999985
No 163
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=32.01 E-value=92 Score=30.98 Aligned_cols=13 Identities=31% Similarity=0.726 Sum_probs=11.0
Q ss_pred CCCcEEEEECCcc
Q 013607 164 YKKPYISLMDGVT 176 (439)
Q Consensus 164 ~~kPvIAavnG~a 176 (439)
..||||+..-|..
T Consensus 232 ~~KPVV~lk~Grs 244 (300)
T PLN00125 232 TEKPVVAFIAGLT 244 (300)
T ss_pred CCCCEEEEEecCC
Confidence 3899999998875
No 164
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=28.67 E-value=1.4e+02 Score=26.60 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCC
Q 013607 91 MNLDMDIKYKSFLDEWESDPRVKCVLIEGSG 121 (439)
Q Consensus 91 l~~~m~~eL~~~l~~~~~d~~vr~vVltg~g 121 (439)
++++. ..++|..+.+||++++|+|-+.+
T Consensus 56 id~~~---~~~~l~~~~~Dp~v~vIlvd~~~ 83 (153)
T PF00549_consen 56 IDPST---RNEALEIEAADPEVKVILVDIVG 83 (153)
T ss_dssp T-SSH---HHHHHHHHHTSTTESEEEEEEES
T ss_pred cCHHH---HHHHHHHHhcCCCccEEEEEecc
Confidence 45444 55777788889999999998876
No 165
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=27.04 E-value=1.1e+02 Score=30.12 Aligned_cols=24 Identities=21% Similarity=0.544 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCCCceEEEEEeCC
Q 013607 98 KYKSFLDEWESDPRVKCVLIEGSG 121 (439)
Q Consensus 98 eL~~~l~~~~~d~~vr~vVltg~g 121 (439)
++.+.|+.+.+||++++|++..++
T Consensus 185 ~~~D~l~~l~~Dp~T~~I~lylE~ 208 (286)
T TIGR01019 185 SFIDVLEAFEKDPETEAIVMIGEI 208 (286)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEec
Confidence 345566666667777777776653
No 166
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=27.00 E-value=60 Score=33.69 Aligned_cols=97 Identities=13% Similarity=0.206 Sum_probs=58.8
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE--EeCCCCCcccCCcchhhhHhhh-----cCCCCCchHH
Q 013607 77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLI--EGSGPRAFCAGMDIKGVVAEIQ-----KDRNTPLVPK 149 (439)
Q Consensus 77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVl--tg~g~~~F~aG~Dl~~~~~~~~-----~~~~~~~~~~ 149 (439)
|+.|+|. .|+.....+|..++..++++. ++++|| ++.+++......++..+.-... .........
T Consensus 205 IGyI~I~------~F~~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~- 276 (406)
T COG0793 205 IGYIRIP------SFGEGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNV- 276 (406)
T ss_pred EEEEEec------ccccchHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCceee-
Confidence 8888884 577777888999999999876 888887 5655455666665554322100 000000000
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEECCcccchhhhhhhc
Q 013607 150 VFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGH 186 (439)
Q Consensus 150 ~~~~~~~l~~~l~~~~kPvIAavnG~a~GgG~~lal~ 186 (439)
+.. ...-...++|+|..||+....++=.++.+
T Consensus 277 ~~~-----~~~~~~~~~PlvvLvn~~SASAsEI~aga 308 (406)
T COG0793 277 YFS-----ASGEALYDGPLVVLVNEGSASASEIFAGA 308 (406)
T ss_pred ccc-----cccccCCCCCEEEEECCCCccHHHHHHHH
Confidence 000 00001468999999999988777555544
No 167
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=25.79 E-value=1.2e+02 Score=29.88 Aligned_cols=14 Identities=36% Similarity=0.624 Sum_probs=11.7
Q ss_pred CCCcEEEEECCccc
Q 013607 164 YKKPYISLMDGVTM 177 (439)
Q Consensus 164 ~~kPvIAavnG~a~ 177 (439)
..||||+..-|..-
T Consensus 226 ~~KPVV~lk~Grs~ 239 (291)
T PRK05678 226 VTKPVVGYIAGVTA 239 (291)
T ss_pred CCCCEEEEEecCCC
Confidence 48999999999843
No 168
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=25.62 E-value=27 Score=24.09 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=16.5
Q ss_pred hcCCCCCcHHHHHHcCCcccc
Q 013607 232 MTGKRISTPSDALFAGLGTDY 252 (439)
Q Consensus 232 ltG~~i~~A~eA~~~GLv~~v 252 (439)
-||+.++ -.+|++.||+|.-
T Consensus 17 ~tg~~ls-v~~A~~~glId~~ 36 (45)
T PF00681_consen 17 ETGERLS-VEEAIQRGLIDSD 36 (45)
T ss_dssp TTTEEEE-HHHHHHTTSS-HH
T ss_pred CCCeEEc-HHHHHHCCCcCHH
Confidence 3789999 9999999999753
No 169
>PF06744 DUF1215: Protein of unknown function (DUF1215); InterPro: IPR010623 This domain represents a conserved region situated towards the C-terminal end of several hypothetical bacterial proteins of unknown function. A few members resemble the ImcF protein, which has been proposed [] to be involved in Vibrio cholerae cell surface reorganisation that results in increased adherence to epithelial cells line and increased conjugation frequency.
Probab=24.76 E-value=3.6e+02 Score=22.69 Aligned_cols=25 Identities=28% Similarity=0.640 Sum_probs=20.6
Q ss_pred CCCCCCCCCcCCCCHHHHHhcccCCC
Q 013607 406 QNPKWNPASLEEVNQSEVEALFEPLG 431 (439)
Q Consensus 406 r~P~w~~~~~~~v~~~~v~~~f~~~~ 431 (439)
|-| |.+.+-.||+.++++.||.|..
T Consensus 54 RYP-F~~~s~~dv~l~Df~~fF~p~G 78 (125)
T PF06744_consen 54 RYP-FDPDSSRDVSLADFARFFGPGG 78 (125)
T ss_pred CCC-CCCCCcccCCHHHHHHHhcCCC
Confidence 455 5677888999999999999963
No 170
>PRK06091 membrane protein FdrA; Validated
Probab=23.57 E-value=2.1e+02 Score=30.94 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=16.3
Q ss_pred HHHHHHHhCCCcEEEEECCccc
Q 013607 156 SLICKISEYKKPYISLMDGVTM 177 (439)
Q Consensus 156 ~l~~~l~~~~kPvIAavnG~a~ 177 (439)
+++..++.+.||||+..-|..-
T Consensus 270 ~fl~aar~~~KPVVvlk~Grs~ 291 (555)
T PRK06091 270 KIINAMKATGKPVVALFLGYTP 291 (555)
T ss_pred HHHHHHhhCCCCEEEEEecCCc
Confidence 3444555679999999999654
No 171
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=22.84 E-value=30 Score=35.68 Aligned_cols=102 Identities=14% Similarity=0.169 Sum_probs=54.1
Q ss_pred CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE--EeCCCCCcccCCcchhhhHhhhcCCCCCchH--HH
Q 013607 75 NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLI--EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVP--KV 150 (439)
Q Consensus 75 ~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVl--tg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~--~~ 150 (439)
++|+.|.++ .|+.....++.++++.+... .++.+|| ++.|++.+..+.++..+.- ..+..-... .-
T Consensus 194 ~~IgYi~i~------~F~~~~~~~~~~~l~~l~~~-~~~glIlDLR~N~GG~~~~a~~ia~~f~---~~~~~~~~~~~~~ 263 (389)
T PLN00049 194 PKIGYIKLT------TFNQNASSAVKEAIETLRAN-GVDAFVLDLRDNSGGLFPAGIEIAKLWL---DKGVIVYIADSRG 263 (389)
T ss_pred CCEEEEEec------cccchhHHHHHHHHHHHHHC-CCCEEEEEcCCCCCCCHHHHHHHHHHhc---CCCcEEEEecCCC
Confidence 479999984 45666788899999998764 4788887 4444333333333322111 110000000 00
Q ss_pred HHHHHHHHHH-HHhCCCcEEEEECCcccchhhhhhhc
Q 013607 151 FTAEYSLICK-ISEYKKPYISLMDGVTMGFGIGISGH 186 (439)
Q Consensus 151 ~~~~~~l~~~-l~~~~kPvIAavnG~a~GgG~~lal~ 186 (439)
....+..... .....+|++..+|+.+..++=.++.+
T Consensus 264 ~~~~~~~~~~~~~~~~~PvvVLvn~~TaSasEi~a~a 300 (389)
T PLN00049 264 VRDIYDADGSSAIATSEPLAVLVNKGTASASEILAGA 300 (389)
T ss_pred ceeEEecCCCccccCCCCEEEEECCCCccHHHHHHHH
Confidence 0000000000 11246899999999998877666644
No 172
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=22.42 E-value=3.9e+02 Score=26.35 Aligned_cols=118 Identities=9% Similarity=0.098 Sum_probs=67.5
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccCCcchhhhH-----hhhcCCCCCchHHHH
Q 013607 77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA-----EIQKDRNTPLVPKVF 151 (439)
Q Consensus 77 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~-----~~~~~~~~~~~~~~~ 151 (439)
--++.+|.- .|-++...+..+.+++...--.+.-++-||-|...+.|.---|...... .....+ ...+-.+-
T Consensus 129 ~Nilpi~Gs--~h~Vt~~~lAa~~e~~~~~~p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g-~~~lisfS 205 (329)
T COG3660 129 PNILPINGS--PHNVTSQRLAALREAFKHLLPLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQG-GSFLISFS 205 (329)
T ss_pred CceeeccCC--CCcccHHHhhhhHHHHHhhCCCCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCC-ceEEEEee
Confidence 346777754 4779999999999999888656666777777765677765444332111 110010 11000011
Q ss_pred HHHH-HHHHHHHh-CCCcEEEEECCcc--cchhhhhhhcCCeEEEcCCee
Q 013607 152 TAEY-SLICKISE-YKKPYISLMDGVT--MGFGIGISGHGRYRIVTEKTL 197 (439)
Q Consensus 152 ~~~~-~l~~~l~~-~~kPvIAavnG~a--~GgG~~lal~cD~ria~e~a~ 197 (439)
++-- .+-..|.+ ++--.+...|+-- ..--..+..++|++|+++++.
T Consensus 206 RRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaDSi 255 (329)
T COG3660 206 RRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTADSI 255 (329)
T ss_pred cCCcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEecchh
Confidence 1111 11122322 5555677788873 334577788899999998764
No 173
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=22.37 E-value=1.4e+02 Score=25.54 Aligned_cols=45 Identities=20% Similarity=0.289 Sum_probs=31.4
Q ss_pred EEEEEEcCCCCCCCC--C----------HHHHHHHHHHHHHH--hcCCCceEEEEEeCC
Q 013607 77 VAVITLDRPKALNAM--N----------LDMDIKYKSFLDEW--ESDPRVKCVLIEGSG 121 (439)
Q Consensus 77 V~~Itlnrp~~~Nal--~----------~~m~~eL~~~l~~~--~~d~~vr~vVltg~g 121 (439)
+..|+.+-|.|...= + ...+.++.+.+... -..+.++.|||.|.|
T Consensus 25 ~~~i~~~ip~K~~~Gg~s~~rf~r~~~~~~f~~~i~~~l~~~f~~~~~~~~~iIiaGPG 83 (133)
T PF03464_consen 25 LQRIESNIPGKHKKGGQSQRRFEREKALEKFFKEIAEALKKYFLVNFDDVKCIIIAGPG 83 (133)
T ss_dssp EEEEE-GHCCCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHCCCHTTTCSEEEEEEST
T ss_pred EEEEEecCCCccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccEEEEECCH
Confidence 466778888886542 1 35666777777766 556779999999876
No 174
>PF09905 DUF2132: Uncharacterized conserved protein (DUF2132); InterPro: IPR018668 This entry contains proteins that have no known function. ; PDB: 2JVW_A.
Probab=21.43 E-value=1.5e+02 Score=22.24 Aligned_cols=29 Identities=28% Similarity=0.722 Sum_probs=20.4
Q ss_pred hhcCCCCCHHHHHHHHHhcccccchhHHHHHHHHHHHH
Q 013607 304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGM 341 (439)
Q Consensus 304 ~~F~~~~sv~ei~~~l~~~~~~~~~~~~~~A~~~l~~l 341 (439)
+||..+.|++.=+.=|++. .||++-.+.+
T Consensus 34 ~CF~~~PsikSSLkFLRkT---------pWAR~KVE~l 62 (64)
T PF09905_consen 34 NCFKNNPSIKSSLKFLRKT---------PWAREKVENL 62 (64)
T ss_dssp SSTTSS--HHHHHHHHHHS---------HHHHHHHHHH
T ss_pred ccCCCCCchHHHHHHHhcC---------HhHHHHHHHh
Confidence 6999998988877777776 6888665543
Done!