Query 013611
Match_columns 439
No_of_seqs 125 out of 1364
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 05:36:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013611.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013611hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1237 H+/oligopeptide sympor 100.0 7.8E-49 1.7E-53 404.6 28.9 428 3-439 122-567 (571)
2 COG3104 PTR2 Dipeptide/tripept 100.0 8.3E-40 1.8E-44 322.5 26.6 364 30-437 115-492 (498)
3 PRK15462 dipeptide/tripeptide 100.0 2.8E-33 6.1E-38 285.1 33.5 364 34-436 102-483 (493)
4 PRK10207 dipeptide/tripeptide 100.0 1.3E-32 2.7E-37 283.5 34.8 364 34-437 107-481 (489)
5 TIGR00926 2A1704 Peptide:H+ sy 100.0 1.3E-31 2.8E-36 281.7 36.9 362 31-435 84-654 (654)
6 TIGR00924 yjdL_sub1_fam amino 100.0 6.5E-32 1.4E-36 277.8 33.9 357 31-437 101-473 (475)
7 PRK09584 tppB putative tripept 100.0 2.3E-31 5E-36 275.3 34.5 362 32-437 112-484 (500)
8 PF00854 PTR2: POT family; In 100.0 1.6E-32 3.6E-37 273.9 14.5 323 27-376 28-371 (372)
9 PRK03545 putative arabinose tr 99.7 9.2E-16 2E-20 154.0 28.1 289 29-434 94-382 (390)
10 PRK11646 multidrug resistance 99.7 1.2E-15 2.5E-20 154.0 25.6 293 30-433 97-389 (400)
11 PRK05122 major facilitator sup 99.7 1.3E-14 2.9E-19 145.9 30.1 285 31-438 111-395 (399)
12 TIGR00893 2A0114 d-galactonate 99.7 3.6E-15 7.8E-20 148.1 24.7 317 31-430 81-397 (399)
13 PRK09874 drug efflux system pr 99.7 5.7E-15 1.2E-19 148.7 25.5 299 30-437 105-403 (408)
14 PRK11551 putative 3-hydroxyphe 99.7 1.7E-14 3.6E-19 145.5 28.2 299 30-435 101-399 (406)
15 TIGR00711 efflux_EmrB drug res 99.7 1.8E-15 4E-20 155.9 20.3 308 30-390 88-409 (485)
16 PRK10489 enterobactin exporter 99.7 2.8E-14 6E-19 144.6 28.5 295 30-437 108-404 (417)
17 TIGR00894 2A0114euk Na(+)-depe 99.7 7.2E-15 1.6E-19 151.1 24.2 321 31-433 130-451 (465)
18 PRK12382 putative transporter; 99.7 4.7E-14 1E-18 141.6 29.1 279 30-432 110-389 (392)
19 PRK14995 methyl viologen resis 99.7 7.8E-15 1.7E-19 152.1 24.1 307 30-389 92-411 (495)
20 TIGR00900 2A0121 H+ Antiporter 99.7 1.1E-14 2.4E-19 143.5 24.1 271 31-390 91-362 (365)
21 TIGR00902 2A0127 phenyl propri 99.7 6E-14 1.3E-18 140.6 28.4 283 29-427 91-374 (382)
22 KOG2532 Permease of the major 99.7 1.7E-15 3.7E-20 154.2 16.4 315 31-432 127-447 (466)
23 PRK06814 acylglycerophosphoeth 99.7 1.6E-14 3.4E-19 164.4 25.5 288 30-389 106-394 (1140)
24 PRK11128 putative 3-phenylprop 99.6 1.5E-13 3.3E-18 137.6 28.7 283 29-427 91-374 (382)
25 PRK10213 nepI ribonucleoside t 99.6 2E-13 4.4E-18 137.4 28.7 84 29-118 105-188 (394)
26 TIGR00903 2A0129 major facilit 99.6 1.3E-13 2.7E-18 137.6 25.8 86 30-122 77-162 (368)
27 PRK15402 multidrug efflux syst 99.6 3E-13 6.5E-18 136.5 28.5 271 30-390 99-369 (406)
28 cd06174 MFS The Major Facilita 99.6 2.4E-13 5.3E-18 132.9 26.0 264 30-429 85-349 (352)
29 PRK10054 putative transporter; 99.6 1.2E-13 2.6E-18 139.1 24.3 265 30-390 94-358 (395)
30 TIGR00899 2A0120 sugar efflux 99.6 2.5E-13 5.5E-18 134.9 26.2 287 29-430 84-372 (375)
31 PRK10091 MFS transport protein 99.6 3.3E-13 7.2E-18 135.1 27.1 85 29-119 88-172 (382)
32 PF07690 MFS_1: Major Facilita 99.6 1.7E-14 3.7E-19 141.6 17.1 267 31-382 84-352 (352)
33 COG2814 AraJ Arabinose efflux 99.6 4.4E-13 9.5E-18 131.9 26.5 294 27-438 96-392 (394)
34 PRK09705 cynX putative cyanate 99.6 3.3E-13 7.2E-18 135.8 26.0 287 29-433 94-382 (393)
35 PRK11663 regulatory protein Uh 99.6 6.1E-13 1.3E-17 135.6 28.1 84 29-118 108-191 (434)
36 PRK10504 putative transporter; 99.6 4.7E-13 1E-17 137.7 27.5 308 30-391 96-415 (471)
37 TIGR00892 2A0113 monocarboxyla 99.6 1.8E-13 3.9E-18 140.4 23.6 307 31-426 106-415 (455)
38 PF05977 MFS_3: Transmembrane 99.6 3.4E-13 7.4E-18 139.6 25.6 292 29-429 100-391 (524)
39 PRK11195 lysophospholipid tran 99.6 4.3E-13 9.4E-18 135.0 25.7 262 36-389 92-354 (393)
40 TIGR00879 SP MFS transporter, 99.6 2.1E-13 4.6E-18 139.2 23.7 89 29-123 124-215 (481)
41 TIGR00710 efflux_Bcr_CflA drug 99.6 8.3E-13 1.8E-17 131.6 27.2 268 30-388 91-358 (385)
42 PRK11102 bicyclomycin/multidru 99.6 1.2E-12 2.7E-17 130.3 27.4 86 30-121 77-162 (377)
43 TIGR00890 2A0111 Oxalate/Forma 99.6 5.1E-13 1.1E-17 132.1 23.9 288 29-425 88-375 (377)
44 PRK09556 uhpT sugar phosphate 99.6 1.2E-12 2.6E-17 134.7 26.5 86 29-120 119-207 (467)
45 PRK10406 alpha-ketoglutarate t 99.6 3E-12 6.5E-17 130.5 28.6 81 31-117 123-211 (432)
46 PRK10077 xylE D-xylose transpo 99.6 1.9E-12 4.1E-17 133.4 26.6 86 30-121 118-211 (479)
47 PRK15011 sugar efflux transpor 99.5 3.3E-12 7.2E-17 128.4 27.4 285 31-431 104-390 (393)
48 PRK11010 ampG muropeptide tran 99.5 5.2E-12 1.1E-16 130.8 29.1 299 29-434 104-405 (491)
49 PRK11273 glpT sn-glycerol-3-ph 99.5 6.7E-12 1.5E-16 128.7 29.7 83 31-119 119-202 (452)
50 TIGR00895 2A0115 benzoate tran 99.5 2.5E-12 5.3E-17 128.3 25.7 293 30-388 103-397 (398)
51 PRK12307 putative sialic acid 99.5 2.7E-12 5.8E-17 130.2 25.5 79 29-113 103-181 (426)
52 PRK03633 putative MFS family t 99.5 6.8E-12 1.5E-16 125.6 27.2 256 29-390 91-346 (381)
53 TIGR00901 2A0125 AmpG-related 99.5 3.9E-12 8.4E-17 126.0 24.7 263 30-375 81-355 (356)
54 TIGR00883 2A0106 metabolite-pr 99.5 2.4E-12 5.2E-17 128.1 23.1 81 33-119 97-185 (394)
55 TIGR00891 2A0112 putative sial 99.5 3.3E-12 7.1E-17 128.0 24.2 83 30-118 98-182 (405)
56 TIGR00712 glpT glycerol-3-phos 99.5 7.2E-12 1.6E-16 127.9 26.8 84 31-120 117-201 (438)
57 PRK15403 multidrug efflux syst 99.5 5.1E-12 1.1E-16 128.1 25.3 87 29-121 101-187 (413)
58 PRK09952 shikimate transporter 99.5 2.8E-11 6E-16 123.6 30.7 77 33-115 126-210 (438)
59 PRK08633 2-acyl-glycerophospho 99.5 5.6E-12 1.2E-16 143.6 28.2 272 30-389 101-382 (1146)
60 TIGR00881 2A0104 phosphoglycer 99.5 1.9E-12 4.2E-17 128.1 21.0 86 30-121 81-167 (379)
61 TIGR02332 HpaX 4-hydroxyphenyl 99.5 7.1E-12 1.5E-16 127.0 24.3 87 29-121 93-185 (412)
62 TIGR00898 2A0119 cation transp 99.5 1.7E-11 3.8E-16 127.2 27.7 317 30-431 178-494 (505)
63 TIGR00897 2A0118 polyol permea 99.5 4.6E-11 9.9E-16 120.6 29.2 77 31-113 104-181 (402)
64 PRK03699 putative transporter; 99.5 1.7E-11 3.6E-16 123.4 25.9 86 30-121 93-179 (394)
65 PRK10642 proline/glycine betai 99.5 3.5E-11 7.6E-16 124.7 28.5 77 34-116 120-204 (490)
66 COG2271 UhpC Sugar phosphate p 99.5 8.5E-12 1.8E-16 121.8 21.9 92 29-126 114-208 (448)
67 PRK11043 putative transporter; 99.5 3.9E-11 8.5E-16 120.8 27.4 87 30-122 92-178 (401)
68 TIGR00792 gph sugar (Glycoside 99.5 3.2E-11 7E-16 122.7 26.9 271 32-394 99-383 (437)
69 PRK15075 citrate-proton sympor 99.5 6.1E-11 1.3E-15 120.9 28.2 73 34-112 119-199 (434)
70 PRK11652 emrD multidrug resist 99.5 6.4E-11 1.4E-15 119.0 27.7 84 30-119 94-177 (394)
71 PRK11902 ampG muropeptide tran 99.4 1.3E-10 2.8E-15 117.2 29.0 85 30-120 92-177 (402)
72 PRK03893 putative sialic acid 99.4 2.2E-11 4.7E-16 126.1 23.8 78 30-113 106-183 (496)
73 PRK10473 multidrug efflux syst 99.4 1.2E-10 2.6E-15 116.9 28.5 85 31-121 90-174 (392)
74 TIGR01299 synapt_SV2 synaptic 99.4 2.5E-10 5.3E-15 122.6 31.1 87 30-122 253-352 (742)
75 PLN00028 nitrate transmembrane 99.4 3E-11 6.5E-16 124.7 22.7 85 30-121 122-215 (476)
76 PRK09528 lacY galactoside perm 99.4 1.9E-11 4.1E-16 124.0 20.8 265 72-434 139-405 (420)
77 TIGR02718 sider_RhtX_FptX side 99.4 4.7E-10 1E-14 112.6 27.0 83 35-123 100-182 (390)
78 TIGR00882 2A0105 oligosacchari 99.4 2.1E-10 4.5E-15 115.4 24.3 290 34-430 101-393 (396)
79 KOG1330 Sugar transporter/spin 99.4 1.8E-12 3.9E-17 127.6 8.4 88 30-123 119-207 (493)
80 TIGR00896 CynX cyanate transpo 99.3 4.2E-10 9.1E-15 111.4 24.6 260 31-391 86-348 (355)
81 TIGR01272 gluP glucose/galacto 99.3 9.6E-10 2.1E-14 107.0 26.1 83 28-116 6-104 (310)
82 KOG3764 Vesicular amine transp 99.3 7.6E-11 1.6E-15 114.0 15.5 96 28-128 155-250 (464)
83 PRK15034 nitrate/nitrite trans 99.3 1.6E-09 3.4E-14 110.2 25.8 87 30-123 126-230 (462)
84 TIGR00889 2A0110 nucleoside tr 99.3 7.5E-10 1.6E-14 112.4 23.2 150 246-434 254-404 (418)
85 PRK10133 L-fucose transporter; 99.3 2.5E-09 5.5E-14 109.2 26.6 64 29-98 114-177 (438)
86 TIGR00887 2A0109 phosphate:H+ 99.3 3.5E-09 7.5E-14 110.1 27.3 83 31-119 114-219 (502)
87 TIGR01301 GPH_sucrose GPH fami 99.2 8.2E-09 1.8E-13 105.6 28.8 333 32-437 114-476 (477)
88 PF13347 MFS_2: MFS/sugar tran 99.2 2.4E-09 5.3E-14 108.9 24.4 312 31-438 102-427 (428)
89 TIGR00805 oat sodium-independe 99.2 3.7E-09 8.1E-14 112.6 26.7 87 31-123 171-279 (633)
90 PRK09848 glucuronide transport 99.2 1.2E-08 2.7E-13 104.4 28.4 94 282-395 292-392 (448)
91 TIGR00885 fucP L-fucose:H+ sym 99.2 4E-09 8.7E-14 106.8 23.7 86 29-120 91-202 (410)
92 TIGR00886 2A0108 nitrite extru 99.2 1.3E-09 2.9E-14 107.8 18.7 79 31-116 90-179 (366)
93 PRK09669 putative symporter Ya 99.2 2.3E-08 5E-13 102.3 27.1 68 328-395 318-392 (444)
94 PF03209 PUCC: PUCC protein; 99.1 3.6E-08 7.8E-13 96.9 26.5 307 27-432 84-398 (403)
95 COG2223 NarK Nitrate/nitrite t 99.1 5.6E-09 1.2E-13 102.3 20.2 293 31-435 104-404 (417)
96 TIGR00788 fbt folate/biopterin 99.1 9.1E-09 2E-13 106.0 20.3 293 32-391 120-413 (468)
97 PRK10429 melibiose:sodium symp 99.1 3.8E-08 8.3E-13 101.6 24.4 278 32-395 106-397 (473)
98 KOG2533 Permease of the major 99.0 3.7E-08 8.1E-13 101.1 22.6 86 29-120 131-222 (495)
99 PF06609 TRI12: Fungal trichot 99.0 9.9E-08 2.1E-12 99.4 23.0 315 28-388 127-464 (599)
100 KOG2615 Permease of the major 98.9 2.6E-08 5.7E-13 96.1 15.7 286 29-389 118-412 (451)
101 KOG4686 Predicted sugar transp 98.9 1.1E-08 2.3E-13 95.0 12.4 314 24-434 128-445 (459)
102 PF11700 ATG22: Vacuole efflux 98.9 1.9E-06 4E-11 88.7 28.7 93 328-435 379-471 (477)
103 PF03825 Nuc_H_symport: Nucleo 98.9 1.3E-06 2.8E-11 88.1 25.3 129 281-436 270-399 (400)
104 COG0738 FucP Fucose permease [ 98.8 1.7E-06 3.7E-11 84.6 24.5 67 27-99 99-165 (422)
105 PRK11462 putative transporter; 98.8 2.9E-06 6.3E-11 87.3 27.9 87 32-123 109-202 (460)
106 PF01306 LacY_symp: LacY proto 98.8 2.1E-06 4.5E-11 85.8 25.6 119 282-438 287-406 (412)
107 KOG2504 Monocarboxylate transp 98.8 4.4E-07 9.5E-12 93.9 19.1 338 28-432 130-476 (509)
108 KOG0255 Synaptic vesicle trans 98.7 2.3E-05 4.9E-10 81.9 28.5 87 27-122 166-252 (521)
109 KOG0569 Permease of the major 98.7 2.6E-05 5.6E-10 79.6 27.1 89 29-123 113-203 (485)
110 COG2807 CynX Cyanate permease 98.6 2.5E-05 5.3E-10 75.6 23.2 87 31-124 98-185 (395)
111 PRK03545 putative arabinose tr 98.6 4E-06 8.6E-11 84.1 18.9 137 246-431 47-183 (390)
112 TIGR00806 rfc RFC reduced fola 98.6 1.7E-05 3.7E-10 80.3 22.6 87 29-123 112-201 (511)
113 TIGR02332 HpaX 4-hydroxyphenyl 98.6 6E-06 1.3E-10 83.7 20.0 145 245-432 45-189 (412)
114 COG2814 AraJ Arabinose efflux 98.6 4.4E-06 9.6E-11 82.7 18.1 175 205-433 15-189 (394)
115 PRK11663 regulatory protein Uh 98.5 1.2E-05 2.6E-10 82.0 21.0 136 245-429 60-195 (434)
116 PRK11646 multidrug resistance 98.5 9E-06 2E-10 82.1 19.6 135 247-431 50-184 (400)
117 COG2211 MelB Na+/melibiose sym 98.5 0.00014 2.9E-09 73.8 27.3 277 30-396 110-401 (467)
118 PRK14995 methyl viologen resis 98.5 1.9E-05 4.2E-10 82.0 21.8 140 244-432 42-182 (495)
119 PF07690 MFS_1: Major Facilita 98.5 8.8E-06 1.9E-10 79.6 17.6 135 244-427 33-167 (352)
120 TIGR00710 efflux_Bcr_CflA drug 98.4 1.5E-05 3.3E-10 79.1 18.9 140 245-433 42-181 (385)
121 PRK10213 nepI ribonucleoside t 98.4 3.5E-05 7.5E-10 77.6 21.4 132 246-426 58-189 (394)
122 PRK10054 putative transporter; 98.4 1.9E-05 4.1E-10 79.6 19.4 137 244-430 44-180 (395)
123 KOG0254 Predicted transporter 98.4 3.6E-05 7.8E-10 80.3 22.1 84 31-120 141-225 (513)
124 TIGR00880 2_A_01_02 Multidrug 98.4 9.5E-06 2.1E-10 67.8 14.3 131 252-431 7-137 (141)
125 KOG1330 Sugar transporter/spin 98.4 7.2E-07 1.6E-11 88.5 8.4 140 246-433 71-210 (493)
126 TIGR00900 2A0121 H+ Antiporter 98.4 1.9E-05 4E-10 77.6 18.6 142 245-430 36-177 (365)
127 PRK11551 putative 3-hydroxyphe 98.4 3.4E-05 7.4E-10 77.6 20.7 112 245-389 52-163 (406)
128 TIGR00711 efflux_EmrB drug res 98.4 1.5E-05 3.2E-10 82.1 18.4 140 244-432 38-177 (485)
129 PF03092 BT1: BT1 family; Int 98.4 3.2E-05 6.9E-10 78.9 19.6 92 31-126 85-176 (433)
130 PRK10504 putative transporter; 98.4 4.8E-05 1E-09 78.2 21.1 140 245-433 47-186 (471)
131 KOG3764 Vesicular amine transp 98.4 3.4E-06 7.4E-11 82.3 11.1 147 242-437 105-252 (464)
132 TIGR00893 2A0114 d-galactonate 98.3 1.6E-05 3.5E-10 78.6 16.4 138 245-431 31-168 (399)
133 PTZ00207 hypothetical protein; 98.3 0.00018 4E-09 75.6 24.7 82 30-120 118-200 (591)
134 PRK10091 MFS transport protein 98.3 4.9E-05 1.1E-09 76.1 19.6 137 245-430 40-176 (382)
135 COG2270 Permeases of the major 98.3 6.5E-05 1.4E-09 74.2 19.3 127 263-432 303-429 (438)
136 PF03137 OATP: Organic Anion T 98.3 9.9E-08 2.1E-12 99.5 -0.6 93 31-129 140-254 (539)
137 PRK10473 multidrug efflux syst 98.3 9.1E-05 2E-09 74.2 20.4 139 245-432 40-178 (392)
138 TIGR00891 2A0112 putative sial 98.3 5.7E-05 1.2E-09 75.5 18.8 114 244-390 48-161 (405)
139 PRK09874 drug efflux system pr 98.3 8.7E-05 1.9E-09 74.6 19.9 138 246-433 57-194 (408)
140 KOG3626 Organic anion transpor 98.3 4.9E-05 1.1E-09 80.4 18.0 106 15-126 209-344 (735)
141 TIGR00712 glpT glycerol-3-phos 98.3 7E-05 1.5E-09 76.5 18.9 145 245-433 63-207 (438)
142 TIGR00924 yjdL_sub1_fam amino 98.2 3.4E-05 7.4E-10 79.7 16.6 144 244-435 49-195 (475)
143 TIGR00895 2A0115 benzoate tran 98.2 3E-05 6.5E-10 77.1 15.3 113 245-390 54-166 (398)
144 PRK15402 multidrug efflux syst 98.2 0.00019 4E-09 72.4 21.0 137 246-431 51-187 (406)
145 cd06174 MFS The Major Facilita 98.2 7.1E-05 1.5E-09 72.8 17.3 136 245-429 36-171 (352)
146 PRK15403 multidrug efflux syst 98.2 0.00018 3.9E-09 73.0 20.5 138 247-433 55-192 (413)
147 PRK09556 uhpT sugar phosphate 98.2 2.3E-05 5.1E-10 80.7 14.1 146 245-431 66-211 (467)
148 PRK11273 glpT sn-glycerol-3-ph 98.2 0.00019 4.2E-09 73.6 20.6 144 245-433 65-209 (452)
149 PRK03633 putative MFS family t 98.2 0.00019 4.2E-09 71.7 20.0 113 244-389 42-154 (381)
150 TIGR00880 2_A_01_02 Multidrug 98.2 5.5E-06 1.2E-10 69.2 7.6 87 30-122 49-135 (141)
151 PRK09705 cynX putative cyanate 98.2 0.00013 2.9E-09 73.3 18.7 111 245-389 46-156 (393)
152 TIGR00903 2A0129 major facilit 98.2 0.00012 2.5E-09 73.2 17.8 89 328-433 78-166 (368)
153 TIGR00805 oat sodium-independe 98.1 2E-05 4.3E-10 84.3 12.5 179 245-434 70-283 (633)
154 PRK03699 putative transporter; 98.1 0.00023 5E-09 71.5 19.5 136 246-429 45-180 (394)
155 PRK10207 dipeptide/tripeptide 98.1 7.3E-05 1.6E-09 77.5 16.0 143 246-435 53-197 (489)
156 TIGR00885 fucP L-fucose:H+ sym 98.1 0.00038 8.2E-09 70.6 20.9 115 245-389 40-154 (410)
157 PRK11102 bicyclomycin/multidru 98.1 0.00011 2.4E-09 72.9 16.8 138 246-432 29-166 (377)
158 TIGR00881 2A0104 phosphoglycer 98.1 2.7E-05 5.8E-10 76.8 11.8 139 245-432 32-171 (379)
159 TIGR01299 synapt_SV2 synaptic 98.1 0.00041 8.9E-09 75.1 21.5 112 245-389 204-315 (742)
160 COG2271 UhpC Sugar phosphate p 98.1 5.9E-05 1.3E-09 74.5 13.6 115 281-433 91-207 (448)
161 PRK10489 enterobactin exporter 98.1 0.00018 4E-09 72.8 17.6 119 244-390 53-171 (417)
162 TIGR00886 2A0108 nitrite extru 98.1 0.00023 5.1E-09 70.2 17.7 112 245-389 39-150 (366)
163 PRK12307 putative sialic acid 98.0 0.00043 9.3E-09 70.1 19.7 112 245-389 55-166 (426)
164 TIGR00879 SP MFS transporter, 98.0 0.00012 2.6E-09 74.6 15.7 111 245-385 73-183 (481)
165 PRK05122 major facilitator sup 98.0 1.3E-05 2.7E-10 80.6 8.2 90 31-126 301-390 (399)
166 TIGR00894 2A0114euk Na(+)-depe 98.0 7.4E-05 1.6E-09 76.8 14.0 140 246-431 79-218 (465)
167 PRK11043 putative transporter; 98.0 0.0007 1.5E-08 68.0 20.6 138 245-431 43-180 (401)
168 KOG2325 Predicted transporter/ 98.0 0.00014 3.1E-09 73.8 15.2 84 336-435 395-478 (488)
169 TIGR00890 2A0111 Oxalate/Forma 98.0 0.00034 7.3E-09 68.9 17.8 137 245-431 40-176 (377)
170 PRK11195 lysophospholipid tran 98.0 0.0005 1.1E-08 69.2 19.2 110 245-390 40-149 (393)
171 PRK11652 emrD multidrug resist 98.0 0.00071 1.5E-08 67.8 20.3 136 246-430 46-181 (394)
172 KOG2816 Predicted transporter 98.0 0.00014 3.1E-09 74.3 15.1 265 48-392 128-393 (463)
173 TIGR00806 rfc RFC reduced fola 98.0 0.00093 2E-08 67.9 20.4 109 247-389 66-174 (511)
174 PRK09584 tppB putative tripept 98.0 0.00036 7.7E-09 72.7 18.1 116 283-435 87-204 (500)
175 PRK12382 putative transporter; 98.0 0.00026 5.7E-09 70.9 16.6 120 245-389 53-172 (392)
176 PRK15034 nitrate/nitrite trans 98.0 0.0015 3.2E-08 66.9 21.8 129 282-434 98-234 (462)
177 PRK03893 putative sialic acid 98.0 0.0011 2.3E-08 68.6 21.0 111 246-389 58-168 (496)
178 PLN00028 nitrate transmembrane 98.0 0.00078 1.7E-08 69.7 19.8 144 247-431 75-218 (476)
179 TIGR00897 2A0118 polyol permea 97.9 0.00091 2E-08 67.4 19.7 117 244-389 49-166 (402)
180 TIGR00899 2A0120 sugar efflux 97.9 0.00066 1.4E-08 67.2 17.9 140 245-433 35-177 (375)
181 TIGR00892 2A0113 monocarboxyla 97.9 0.0006 1.3E-08 70.1 17.9 137 245-431 56-193 (455)
182 PRK15462 dipeptide/tripeptide 97.9 0.00045 9.8E-09 71.3 16.7 142 247-435 49-192 (493)
183 TIGR00889 2A0110 nucleoside tr 97.9 3E-05 6.5E-10 78.8 7.6 86 32-123 308-400 (418)
184 TIGR00898 2A0119 cation transp 97.8 0.00029 6.2E-09 73.2 14.4 133 245-429 129-261 (505)
185 PRK10133 L-fucose transporter; 97.8 0.0027 5.9E-08 64.9 20.9 115 245-389 63-177 (438)
186 TIGR00887 2A0109 phosphate:H+ 97.8 0.00056 1.2E-08 71.2 15.9 117 246-389 59-175 (502)
187 TIGR00926 2A1704 Peptide:H+ sy 97.8 0.0012 2.6E-08 70.6 18.5 251 31-310 81-341 (654)
188 PF05977 MFS_3: Transmembrane 97.8 0.0023 4.9E-08 66.8 19.9 121 242-390 44-164 (524)
189 KOG3762 Predicted transporter 97.8 0.00056 1.2E-08 69.5 14.1 148 242-438 405-553 (618)
190 TIGR01301 GPH_sucrose GPH fami 97.7 0.0017 3.6E-08 66.8 17.8 171 245-435 41-221 (477)
191 PRK08633 2-acyl-glycerophospho 97.7 0.0012 2.6E-08 75.6 18.7 115 246-390 50-164 (1146)
192 PTZ00207 hypothetical protein; 97.7 0.0026 5.5E-08 67.1 19.4 118 282-433 89-206 (591)
193 PRK10077 xylE D-xylose transpo 97.7 0.0012 2.5E-08 68.0 16.5 155 246-429 58-212 (479)
194 TIGR00901 2A0125 AmpG-related 97.7 0.0018 3.8E-08 63.9 16.2 123 282-431 54-177 (356)
195 PRK11010 ampG muropeptide tran 97.7 0.0067 1.5E-07 63.0 21.1 133 262-430 60-193 (491)
196 PRK06814 acylglycerophosphoeth 97.7 0.0015 3.4E-08 74.8 17.7 63 328-390 107-169 (1140)
197 KOG2532 Permease of the major 97.6 0.001 2.2E-08 68.3 14.4 117 282-433 101-217 (466)
198 TIGR00896 CynX cyanate transpo 97.6 0.0021 4.5E-08 63.4 15.9 110 245-389 37-146 (355)
199 PF00083 Sugar_tr: Sugar (and 97.6 5.1E-08 1.1E-12 99.7 -18.4 83 31-119 101-186 (451)
200 PRK10406 alpha-ketoglutarate t 97.5 0.0053 1.1E-07 62.5 18.1 111 258-389 74-184 (432)
201 TIGR00792 gph sugar (Glycoside 97.5 0.002 4.3E-08 65.4 14.8 158 245-433 37-195 (437)
202 PRK11902 ampG muropeptide tran 97.5 0.0084 1.8E-07 60.3 19.2 109 286-428 70-178 (402)
203 PRK10642 proline/glycine betai 97.5 0.0014 3.1E-08 67.9 13.7 107 258-388 68-177 (490)
204 KOG2563 Permease of the major 97.5 0.0017 3.6E-08 64.9 12.3 62 33-100 141-202 (480)
205 KOG2533 Permease of the major 97.4 0.0045 9.8E-08 63.9 16.0 96 328-433 133-228 (495)
206 PRK15075 citrate-proton sympor 97.4 0.0084 1.8E-07 61.1 16.8 108 261-389 70-177 (434)
207 PF06609 TRI12: Fungal trichot 97.3 0.02 4.4E-07 60.2 19.2 138 244-431 79-216 (599)
208 KOG3098 Uncharacterized conser 97.3 0.13 2.9E-06 52.3 23.9 158 247-435 279-438 (461)
209 PRK09952 shikimate transporter 97.2 0.0036 7.7E-08 64.0 12.6 112 257-389 74-185 (438)
210 PRK15011 sugar efflux transpor 97.2 0.032 7E-07 55.9 19.1 90 328-433 104-195 (393)
211 COG2223 NarK Nitrate/nitrite t 97.2 0.014 3.1E-07 57.8 15.4 152 240-433 43-194 (417)
212 KOG0253 Synaptic vesicle trans 97.2 0.12 2.7E-06 50.7 21.2 85 29-121 163-248 (528)
213 TIGR00882 2A0105 oligosacchari 97.2 0.013 2.9E-07 58.7 15.6 140 245-430 40-181 (396)
214 KOG2615 Permease of the major 97.1 0.0033 7.1E-08 61.5 10.0 110 247-390 72-181 (451)
215 PF03137 OATP: Organic Anion T 97.1 9.6E-05 2.1E-09 77.3 -0.9 177 245-438 40-256 (539)
216 PRK11128 putative 3-phenylprop 97.1 0.017 3.7E-07 57.7 15.1 115 243-390 39-153 (382)
217 KOG0252 Inorganic phosphate tr 97.0 0.0043 9.3E-08 62.2 9.8 87 28-123 140-241 (538)
218 PRK09528 lacY galactoside perm 97.0 0.0011 2.5E-08 67.0 5.9 86 31-122 314-400 (420)
219 TIGR00883 2A0106 metabolite-pr 97.0 0.0082 1.8E-07 59.3 11.9 94 282-389 63-156 (394)
220 KOG0254 Predicted transporter 96.9 0.018 4E-07 60.1 13.9 109 246-388 92-200 (513)
221 PF00854 PTR2: POT family; In 96.8 0.0081 1.8E-07 59.9 10.4 125 285-438 2-129 (372)
222 TIGR00902 2A0127 phenyl propri 96.8 0.054 1.2E-06 54.1 16.1 61 328-390 93-153 (382)
223 PRK09669 putative symporter Ya 96.8 0.03 6.5E-07 57.2 14.3 121 246-388 48-169 (444)
224 KOG3626 Organic anion transpor 96.7 0.018 4E-07 61.4 12.3 150 282-437 160-348 (735)
225 PF02487 CLN3: CLN3 protein; 96.7 0.78 1.7E-05 46.1 22.9 62 328-389 334-395 (402)
226 PF03209 PUCC: PUCC protein; 96.6 0.26 5.7E-06 49.1 18.5 99 283-389 49-149 (403)
227 PF11700 ATG22: Vacuole efflux 96.5 0.0095 2.1E-07 61.5 8.5 87 31-123 379-466 (477)
228 KOG2504 Monocarboxylate transp 96.5 0.047 1E-06 56.8 13.5 134 245-428 83-217 (509)
229 PRK11462 putative transporter; 96.4 0.11 2.3E-06 53.6 15.7 111 256-388 58-169 (460)
230 TIGR00769 AAA ADP/ATP carrier 96.3 1.5 3.2E-05 45.2 23.0 41 52-98 149-189 (472)
231 KOG2325 Predicted transporter/ 96.3 0.075 1.6E-06 54.4 13.4 156 245-433 73-230 (488)
232 PRK10429 melibiose:sodium symp 96.1 0.23 5E-06 51.2 16.2 119 246-386 45-164 (473)
233 PF05978 UNC-93: Ion channel r 96.1 0.12 2.7E-06 44.7 11.9 62 328-389 88-149 (156)
234 TIGR02718 sider_RhtX_FptX side 96.0 0.019 4.1E-07 57.5 7.5 75 39-119 310-385 (390)
235 PF03825 Nuc_H_symport: Nucleo 95.9 0.023 5E-07 57.3 7.5 82 36-123 305-393 (400)
236 PF13347 MFS_2: MFS/sugar tran 95.7 0.053 1.2E-06 55.1 9.5 157 249-434 43-200 (428)
237 KOG0569 Permease of the major 95.6 0.46 1E-05 48.9 15.8 59 328-386 115-173 (485)
238 COG2807 CynX Cyanate permease 95.6 0.27 5.9E-06 48.2 13.0 116 281-435 74-189 (395)
239 TIGR01272 gluP glucose/galacto 95.6 0.096 2.1E-06 50.9 10.2 62 328-389 9-70 (310)
240 COG3104 PTR2 Dipeptide/tripept 95.5 0.04 8.7E-07 56.0 7.4 120 282-437 90-211 (498)
241 KOG0255 Synaptic vesicle trans 95.2 0.39 8.5E-06 50.1 14.1 102 285-427 149-250 (521)
242 COG0738 FucP Fucose permease [ 94.6 1.4 3.1E-05 43.9 14.9 91 281-390 75-165 (422)
243 PF06813 Nodulin-like: Nodulin 93.9 2.3 5E-05 39.9 14.3 121 282-435 64-184 (250)
244 PRK09848 glucuronide transport 93.8 0.19 4.1E-06 51.3 7.7 73 31-103 318-391 (448)
245 PF06963 FPN1: Ferroportin1 (F 93.7 7.3 0.00016 39.7 18.6 62 327-388 354-415 (432)
246 KOG0637 Sucrose transporter an 93.5 0.41 8.9E-06 48.3 8.9 167 200-386 32-200 (498)
247 KOG2563 Permease of the major 93.4 1.6 3.5E-05 44.1 12.9 120 245-391 81-202 (480)
248 COG0477 ProP Permeases of the 93.1 0.28 6E-06 45.6 7.1 80 30-115 92-175 (338)
249 COG2211 MelB Na+/melibiose sym 92.8 1.6 3.4E-05 44.8 12.2 64 327-390 110-174 (467)
250 PF05631 DUF791: Protein of un 92.7 4.4 9.5E-05 39.9 14.7 102 24-127 112-218 (354)
251 KOG4332 Predicted sugar transp 92.7 4.7 0.0001 38.2 13.9 44 333-376 348-391 (454)
252 PF01306 LacY_symp: LacY proto 90.9 4.1 8.9E-05 41.1 12.7 31 243-273 43-73 (412)
253 KOG4686 Predicted sugar transp 90.7 0.38 8.3E-06 45.7 4.7 81 35-121 355-439 (459)
254 KOG2816 Predicted transporter 90.2 8.8 0.00019 39.5 14.6 70 346-431 129-198 (463)
255 TIGR00788 fbt folate/biopterin 90.1 0.79 1.7E-05 47.3 7.0 71 35-111 354-429 (468)
256 COG2270 Permeases of the major 89.2 0.65 1.4E-05 46.5 5.2 79 37-121 346-425 (438)
257 PF03092 BT1: BT1 family; Int 88.7 4.6 9.9E-05 41.2 11.3 88 284-390 59-149 (433)
258 PF03219 TLC: TLC ATP/ADP tran 88.3 35 0.00076 35.5 19.4 41 53-99 165-205 (491)
259 KOG0252 Inorganic phosphate tr 87.5 2.4 5.2E-05 43.1 7.9 123 242-391 80-206 (538)
260 KOG3574 Acetyl-CoA transporter 87.2 29 0.00063 34.8 14.9 59 332-390 372-430 (510)
261 PF00083 Sugar_tr: Sugar (and 87.2 0.02 4.3E-07 58.4 -7.1 84 286-388 78-161 (451)
262 KOG3762 Predicted transporter 87.2 0.69 1.5E-05 47.7 4.1 93 31-129 458-551 (618)
263 KOG1237 H+/oligopeptide sympor 83.4 10 0.00022 40.1 10.9 78 213-301 195-273 (571)
264 COG0477 ProP Permeases of the 79.0 34 0.00073 31.2 11.9 62 328-389 93-156 (338)
265 PF01770 Folate_carrier: Reduc 75.7 96 0.0021 31.4 18.0 61 328-389 93-153 (412)
266 PF06813 Nodulin-like: Nodulin 75.2 30 0.00065 32.4 10.1 63 30-99 94-156 (250)
267 TIGR00939 2a57 Equilibrative N 74.5 79 0.0017 32.3 13.8 52 328-384 105-156 (437)
268 TIGR00769 AAA ADP/ATP carrier 73.8 11 0.00024 38.9 7.4 74 38-116 272-345 (472)
269 PF07672 MFS_Mycoplasma: Mycop 69.7 1E+02 0.0022 29.1 15.2 60 72-131 4-68 (267)
270 PF01770 Folate_carrier: Reduc 68.8 1.4E+02 0.003 30.3 23.3 49 327-375 338-386 (412)
271 PF02487 CLN3: CLN3 protein; 68.0 8.1 0.00017 38.9 4.8 64 31-100 334-397 (402)
272 PF03219 TLC: TLC ATP/ADP tran 63.9 26 0.00057 36.4 7.7 77 35-116 285-361 (491)
273 PF05978 UNC-93: Ion channel r 63.3 18 0.00038 31.3 5.4 61 31-97 88-148 (156)
274 KOG3098 Uncharacterized conser 61.4 74 0.0016 32.7 10.3 62 328-389 101-162 (461)
275 TIGR00939 2a57 Equilibrative N 56.4 2.4E+02 0.0051 28.8 20.5 60 329-388 372-431 (437)
276 KOG1479 Nucleoside transporter 56.0 2.3E+02 0.005 28.6 14.0 88 328-431 116-203 (406)
277 PRK07331 cobalt transport prot 53.7 1.4E+02 0.0031 29.1 10.4 107 250-362 107-220 (322)
278 PF06963 FPN1: Ferroportin1 (F 53.7 2.6E+02 0.0057 28.5 13.4 160 242-436 37-205 (432)
279 TIGR02230 ATPase_gene1 F0F1-AT 52.4 68 0.0015 25.4 6.5 38 76-113 45-86 (100)
280 PF01891 CbiM: Cobalt uptake s 50.8 1.9E+02 0.0041 26.0 10.9 99 250-360 106-204 (205)
281 PRK03612 spermidine synthase; 49.1 59 0.0013 34.1 7.6 78 37-121 115-194 (521)
282 COG3202 ATP/ADP translocase [E 44.8 3.8E+02 0.0083 27.9 21.5 39 55-99 171-209 (509)
283 KOG4332 Predicted sugar transp 43.7 32 0.00069 32.8 4.0 87 27-119 339-425 (454)
284 PRK11909 cobalt transport prot 42.8 2.3E+02 0.005 26.1 9.6 35 329-363 183-218 (230)
285 TIGR00123 cbiM cobalamin biosy 42.5 2.7E+02 0.0058 25.4 9.9 99 250-361 109-211 (214)
286 PF06645 SPC12: Microsomal sig 39.3 96 0.0021 23.2 5.3 53 74-129 8-60 (76)
287 PRK08319 cobalt transport prot 36.6 3.3E+02 0.0072 25.0 9.6 31 332-362 182-212 (224)
288 PF13000 Acatn: Acetyl-coenzym 31.8 83 0.0018 32.7 5.1 60 331-390 407-466 (544)
289 KOG4142 Phospholipid methyltra 31.6 2.2E+02 0.0047 24.7 6.7 89 253-352 26-118 (208)
290 KOG0637 Sucrose transporter an 30.7 23 0.00049 36.2 0.9 65 28-97 138-202 (498)
291 PF06123 CreD: Inner membrane 28.6 6.5E+02 0.014 25.7 12.5 21 287-307 298-318 (430)
292 PRK03612 spermidine synthase; 28.1 7.2E+02 0.016 26.0 15.5 51 338-389 119-169 (521)
293 PF01733 Nucleoside_tran: Nucl 27.1 21 0.00044 34.6 -0.1 60 29-94 245-304 (309)
294 PF11151 DUF2929: Protein of u 26.6 2.3E+02 0.005 19.8 5.2 42 77-118 5-46 (57)
295 KOG4112 Signal peptidase subun 25.8 2.3E+02 0.005 22.1 5.3 53 74-129 23-75 (101)
296 PF13829 DUF4191: Domain of un 25.6 1.9E+02 0.0041 26.6 5.8 52 72-126 23-74 (224)
297 KOG3810 Micronutrient transpor 24.3 7.3E+02 0.016 24.9 18.9 100 328-437 325-426 (433)
298 PF12832 MFS_1_like: MFS_1 lik 24.2 2.6E+02 0.0056 20.7 5.5 29 244-272 36-64 (77)
299 COG3202 ATP/ADP translocase [E 22.7 3.5E+02 0.0076 28.2 7.7 81 37-122 289-370 (509)
300 PRK11715 inner membrane protei 22.2 8.6E+02 0.019 24.9 11.7 22 286-307 303-324 (436)
301 PF06570 DUF1129: Protein of u 21.5 2.8E+02 0.0061 24.9 6.3 88 36-131 113-204 (206)
302 PF06779 DUF1228: Protein of u 21.1 3.6E+02 0.0078 20.6 5.8 38 75-112 28-65 (85)
No 1
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=100.00 E-value=7.8e-49 Score=404.63 Aligned_cols=428 Identities=46% Similarity=0.803 Sum_probs=378.5
Q ss_pred eeeeeccccCCCccCCCCCCCccC-CCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHH
Q 013611 3 TLLALITLLSSSDCQNNNTAKSCS-PHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYF 81 (439)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~ 81 (439)
|+.+-+-.++-.+|.|......|. |.+.+...++.++.++++|.|+.+||..++++|||++.++++...+.++|+|+|+
T Consensus 122 t~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf 201 (571)
T KOG1237|consen 122 TLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYF 201 (571)
T ss_pred HHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHH
Confidence 344455556677775666666888 7788999999999999999999999999999999998777777778899999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcc
Q 013611 82 GISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASE 161 (439)
Q Consensus 82 ~~nlG~~ig~~l~g~l~~~~g~~~~F~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ 161 (439)
..|+|..++..+..|++++.+|.++|.++++.+.+++++|+.+.+.|+.++|.+ +|+.++.+++..+.++++..++..
T Consensus 202 ~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~g--sp~t~i~~Vlvaa~~k~~~~~~~~ 279 (571)
T KOG1237|consen 202 SQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRG--SPKTRIGQVLVAAAFKRKAVVSLD 279 (571)
T ss_pred HHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCC--CchhHHHHHHHHHHHHHhccCCCc
Confidence 999999999999999999999999999999999999999999999999988877 899999999999988877654432
Q ss_pred -----------hhhcccccchhhhhhhhcCCC-----CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 013611 162 -----------DEAQSSQQFKFLNKALLATPD-----VSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTF 225 (439)
Q Consensus 162 -----------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~ 225 (439)
+..+..+.+.++|++...... ....+|+.++.++|||.|..+|+++++...+++++.+.|+.+.
T Consensus 280 ~~~~~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~ 359 (571)
T KOG1237|consen 280 PEELYYDCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTF 359 (571)
T ss_pred chhccccccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhh
Confidence 111224556788887765432 2345588889999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHH
Q 013611 226 FTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVE 305 (439)
Q Consensus 226 ~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~ 305 (439)
++.|+.+||++++.++.+|+++++.+..+.+++..|+.++...|+.+|..++|++++++.++.+|+++..++|..++..|
T Consensus 360 ~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~vE 439 (571)
T KOG1237|consen 360 FVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSILSMAVAGIVE 439 (571)
T ss_pred eehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHHHHHHHHHHHH
Confidence 99999999999983499999999999999999999999999999999988888889999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHH
Q 013611 306 IKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILV 385 (439)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~ 385 (439)
.+|++...+ ..+.+.+++++|++|||++.|+||++.++++.|+.++++|++||+.++++|.+..++|+.++..++
T Consensus 440 ~krl~~~~~-----~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv 514 (571)
T KOG1237|consen 440 AKRLKTAVS-----LLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLV 514 (571)
T ss_pred HHHhhhhhh-----ccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887765 111234799999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccCCCCCCCCC-CCcccchhhHHHHHHHHHHHHHHHHHHHHhccCccCC
Q 013611 386 SIINEATSRDGGDSWFA-DNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNREN 439 (439)
Q Consensus 386 ~~~~~~~~~~~~~~~~~-~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~~~~~ 439 (439)
..+...++. ..+|++ +++|.++..++||+++.+..+....|.+.+++|++++
T Consensus 515 ~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~ 567 (571)
T KOG1237|consen 515 SLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKD 567 (571)
T ss_pred HHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeecc
Confidence 988766533 357999 9999999999999999999999999999999997753
No 2
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=100.00 E-value=8.3e-40 Score=322.50 Aligned_cols=364 Identities=20% Similarity=0.323 Sum_probs=280.0
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI 109 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i 109 (439)
.+...+++++.++++|.|++|||++++++|+||++||| |+++|+++|+++|+|++++|++++++.+++||+.+|.+
T Consensus 115 ~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~ 190 (498)
T COG3104 115 SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGL 190 (498)
T ss_pred ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 35678999999999999999999999999999999988 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcceeeecCCCCCCcchh------HHHHHHHHhHh--hccccCcchhhcccccchhhhhhhhcCC
Q 013611 110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFAR------IGRVFVVAIKT--RKATLASEDEAQSSQQFKFLNKALLATP 181 (439)
Q Consensus 110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (439)
+++.+.+++++++++++++...+..++.+|+.. ...++...... ... ...+.++.......
T Consensus 191 aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------l~~~~~~~~~~~~~ 259 (498)
T COG3104 191 AAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLL-----------LNQNTFSGVLLVIS 259 (498)
T ss_pred HHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 999999999999999998876543222233321 11111111000 000 00011111111000
Q ss_pred C-----CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh-hcccCCCCCccccchhhhhhHHHH
Q 013611 182 D-----VSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGA-TMDRTITRSIKIPAASLQLFIGIG 255 (439)
Q Consensus 182 ~-----~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~-~~~~~~g~g~~~~~~~~~~in~~~ 255 (439)
. ...... ..++.. +|+||++..+++++..++||+.|+|+++++..++. +.|++.. |+++|++++|++|+++
T Consensus 260 i~~~~~~~~~~~-~~~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~-g~~vp~~~fQslNp~~ 336 (498)
T COG3104 260 ILIAIIYFAEAF-RSPKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF-GFEVPPAWFQSLNPFF 336 (498)
T ss_pred HHHHHHHHHHHh-ccCccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccc-ceecCHHHHHhhCHHH
Confidence 0 000000 011223 78899999999999999999999999999988875 4566645 7999999999999999
Q ss_pred HHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHH
Q 013611 256 IITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQ 335 (439)
Q Consensus 256 iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 335 (439)
++++.|+.+++++|+.+++ ++ ++++.|+++|+++++++++++....... + +.....|+||++++
T Consensus 337 Iii~~pI~a~l~~~l~~~~-~~---ps~~~KFalGl~l~g~~fl~l~~~~~~~-------~-----~~~~~~s~~~lil~ 400 (498)
T COG3104 337 IILFSPILAALWTKLGRGN-KQ---PSTPIKFALGLILAGLGFLILLLAGIWF-------G-----GPSGLVSVWWLVLS 400 (498)
T ss_pred HHHHHHHHHHHHhHhhcCC-CC---CCcchHHHHHHHHHHHHHHHHHHHHHhh-------c-----CCCCCcCHHHHHHH
Confidence 9999999999999988875 44 5899999999999999999998875431 1 00124799999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHH
Q 013611 336 YLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYW 415 (439)
Q Consensus 336 ~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~ 415 (439)
|+++++||.+.+|.+.+++.+.+|++++|.+||.|++..+.|+.++..+.+.-.. + + +..+......+|+
T Consensus 401 y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~--~-------~~~~~~~~~~~F~ 470 (498)
T COG3104 401 YVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-T--D-------PAYTAFIEGRVFG 470 (498)
T ss_pred HHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccc-c--c-------hhhhhhhhhhhHH
Confidence 9999999999999999999999999999999999999999999999888774221 0 0 0011123455788
Q ss_pred HHHHHHHHHHHHHHHHhccCcc
Q 013611 416 LLAALSAGGLLAFLYFAKSYNR 437 (439)
Q Consensus 416 ~~~~l~~l~~~i~~~~~~~~~~ 437 (439)
.++..+++..++.....++.+|
T Consensus 471 ~~g~v~i~~~~~~~~~~~~~~r 492 (498)
T COG3104 471 TIGVVAIVIGILLLLLSPKLNR 492 (498)
T ss_pred HHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999888888888877654
No 3
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=100.00 E-value=2.8e-33 Score=285.14 Aligned_cols=364 Identities=14% Similarity=0.196 Sum_probs=258.2
Q ss_pred HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHH
Q 013611 34 VFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAF 113 (439)
Q Consensus 34 ~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~~~~ 113 (439)
.+.+++.++++|.|..+|+.+++++++||++|++ |+++++++|++.|+|++++|.++|++.+.+||++.|.++++.
T Consensus 102 ~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaig 177 (493)
T PRK15462 102 FLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVG 177 (493)
T ss_pred HHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 3566777888999999999999999999987655 999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhcCcceeeecCCCCCCcch--hH----HHHHHHH------hHhhccccCcchhhcccccchhhhhhhhcCC
Q 013611 114 MVAALVLFLLGTKTYRFSIKSKQRNPFA--RI----GRVFVVA------IKTRKATLASEDEAQSSQQFKFLNKALLATP 181 (439)
Q Consensus 114 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~--~~----~~~l~~a------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (439)
++++++++++++|++.+..+.+ ++|.. +. ...+... ...... . + ++.+.......
T Consensus 178 m~l~li~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--~--~~~~~~~~~~~ 244 (493)
T PRK15462 178 MIAGLVIFLCGNRHFTHTRGVN-KKVLRATNFLLPNWGWLLVLLVATPALITVLF--------W--K--EWSVYALIVAT 244 (493)
T ss_pred HHHHHHHHHHhhhhhccCCCCC-CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH--------H--H--HHHHHHHHHHH
Confidence 8899988888777654321100 02211 10 0000000 000000 0 0 00000000000
Q ss_pred --CCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-hhcccCCCCCccccchhhhhhHHHHHHH
Q 013611 182 --DVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQG-ATMDRTITRSIKIPAASLQLFIGIGIIT 258 (439)
Q Consensus 182 --~~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~g~g~~~~~~~~~~in~~~iii 258 (439)
......+...+..+.+|+||+..++.+++..++||+.|+|.+++++..+ +++|++++ |+++|++|+|++|++.+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~-g~~ip~~~~qslNp~~ii~ 323 (493)
T PRK15462 245 IIGLGVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMF-GYTVPTAMFQSINAFAVML 323 (493)
T ss_pred HHHHHHHHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhc-ceeeCHHHHHhHhHHHHHH
Confidence 0000000000012346788899999999999999999999999998776 46899988 9999999999999999999
Q ss_pred HHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHH
Q 013611 259 FIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLL 338 (439)
Q Consensus 259 ~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 338 (439)
+.|+...+|.++.+|. ++ ++...|+.+|++++++++.++.+..... .++ ..++.+|++..+++
T Consensus 324 l~P~~a~lw~~l~~~~-~~---~s~~~Kfa~g~~~~g~~f~~l~~~~~~~----~~~---------~~~s~~wl~~~~~~ 386 (493)
T PRK15462 324 CGVFLAWVVKESVAGN-RT---VRIWGKFALGLGLMSAGFCILTLSARWS----AMY---------GHSSLPLMVLGLAV 386 (493)
T ss_pred HHHHHHHHHHHHhcCC-CC---CCcHHHHHHHHHHHHHHHHHHHHHHhhc----CCC---------CCcCHHHHHHHHHH
Confidence 9999999998775432 23 5899999999999999999988765310 011 13789999999999
Q ss_pred HHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHh-hhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHH
Q 013611 339 CGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVL-GVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLL 417 (439)
Q Consensus 339 ~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~-~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~ 417 (439)
+++||.+.+|.+++++.+.+|++.+|++||+|++.. ++|+.+++.+.+....... +++..- .-+...+..+|..+
T Consensus 387 ~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~-~~~~~~---~~~~~~~~~~f~~~ 462 (493)
T PRK15462 387 MGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASF-DASGAI---NYSINAYIEVFDQI 462 (493)
T ss_pred HHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-Cccccc---cchhhhHHHHHHHH
Confidence 999999999999999999999999999999999954 7999999888887642110 000000 00112456678888
Q ss_pred HHHHHHH--HHHHHHHhccCc
Q 013611 418 AALSAGG--LLAFLYFAKSYN 436 (439)
Q Consensus 418 ~~l~~l~--~~i~~~~~~~~~ 436 (439)
+.++++. .+++.++.+.+|
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~ 483 (493)
T PRK15462 463 TWGALACVGVVLMIWLYQALK 483 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 7766655 444555544333
No 4
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=100.00 E-value=1.3e-32 Score=283.50 Aligned_cols=364 Identities=15% Similarity=0.233 Sum_probs=259.2
Q ss_pred HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHH
Q 013611 34 VFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAF 113 (439)
Q Consensus 34 ~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~~~~ 113 (439)
.++++|.++++|+|+++|+..++++|+||+++++ |+++++++|+++|+|+++||.++|++.+++|||++|+++++.
T Consensus 107 ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~----~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~ 182 (489)
T PRK10207 107 LIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR----LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAG 182 (489)
T ss_pred HHHHHHHHHHhccccccCCHHHHHHHhcCCCchh----hhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 4668999999999999999999999999987643 788999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHH-------H-hHhhccccCcchhhcccccchhh-hhhhhcCCCCC
Q 013611 114 MVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVV-------A-IKTRKATLASEDEAQSSQQFKFL-NKALLATPDVS 184 (439)
Q Consensus 114 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------a-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 184 (439)
++++++.+++.++++++.+++.++++.+. .+.+.. . ...+.. +......+. ....... ..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~i~--~~ 251 (489)
T PRK10207 183 LIIALLVYFACRGMVKDIGSEPDHKPMSF-SKLLLVLLGSVVMIFVCAWLM--------HNVEVANLVLIVLSIVV--TI 251 (489)
T ss_pred HHHHHHHHHHcchhhcccCCCCCccchhh-hhHHHHHHHHHHHHHHHHHHH--------hhhhHHHHHHHHHHHHH--HH
Confidence 88888777777766654321111122221 111100 0 000000 000000000 0000000 00
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh-hcccCCCCCccccchhhhhhHHHHHHHHHHhh
Q 013611 185 LEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGA-TMDRTITRSIKIPAASLQLFIGIGIITFIPIY 263 (439)
Q Consensus 185 ~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~-~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~ 263 (439)
...+...+.++ .++++.+....+++..+++|+.+.|..+.++.+.+ +++++.. |+.+++++++++|++.++++.|+.
T Consensus 252 ~f~~~~~~~~~-~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~-G~~i~~~~~~~~n~~~iii~~pl~ 329 (489)
T PRK10207 252 IFFREAFKLDK-TGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEIL-GFSINPVSFQALNPFWVVVASPIL 329 (489)
T ss_pred HHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcccccc-ceEECHHHHHhHhHHHHHHHHHHH
Confidence 00000111122 34556666777778899999999999888887775 4666666 888999999999999999999999
Q ss_pred hhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHH
Q 013611 264 DCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIAD 343 (439)
Q Consensus 264 ~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige 343 (439)
++++.++.+|+ .+ +++..|+.+|+++.+++++.+...+... . +. ...+++||+++.+++.|+||
T Consensus 330 ~~l~~rl~~r~-~~---~~~~~k~~~G~~l~~~~~~~~~~~~~~~-------~--~~---~~~~s~~~~i~~~~l~g~Ge 393 (489)
T PRK10207 330 AGIYTHLGSKG-KD---LSMPMKFTLGMFLCSLGFLTAAAAGMWF-------A--DA---QGLTSPWFIVLVYLFQSLGE 393 (489)
T ss_pred HHHHHHHhhCC-CC---CCcHHHHHHHHHHHHHHHHHHHHHHHhh-------c--CC---CCccCHHHHHHHHHHHHHHH
Confidence 99777665553 33 5899999999999999987765443210 0 00 01367899999999999999
Q ss_pred HHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhcc-ccCCCCCCCCCCCcccchhhHHHHHHHHHHH
Q 013611 344 VFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEA-TSRDGGDSWFADNLNRAHLDYFYWLLAALSA 422 (439)
Q Consensus 344 ~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~ 422 (439)
++.+++.++++++.+|++++|.+||+|++.+++|+.+|..+.+.+... ...||. .....+..+|..+++.++
T Consensus 394 ~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~-------~~~~~~~~~f~~~~~~~~ 466 (489)
T PRK10207 394 LFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPL-------ETLPVYTNVFGKIGLVTL 466 (489)
T ss_pred HHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccch-------hhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988866421 111110 001235778999999999
Q ss_pred HHHHHHHHHhccCcc
Q 013611 423 GGLLAFLYFAKSYNR 437 (439)
Q Consensus 423 l~~~i~~~~~~~~~~ 437 (439)
+.++++++..++++|
T Consensus 467 ~~~v~~~~~~~~~~~ 481 (489)
T PRK10207 467 GVAVVMALMVPWLNR 481 (489)
T ss_pred HHHHHHHHHHHHHHH
Confidence 998888888776655
No 5
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=100.00 E-value=1.3e-31 Score=281.67 Aligned_cols=362 Identities=27% Similarity=0.475 Sum_probs=291.2
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc-------cc
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNL-------NW 103 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~-------g~ 103 (439)
....+++++.++++|.|++|||..++++|||++++++ +|.++|+|+|+++|+|+++++.+.+++.+++ ||
T Consensus 84 ~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~---~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~ 160 (654)
T TIGR00926 84 HDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLS---LRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCY 160 (654)
T ss_pred HHHHHHHHHHHHHhhccccccCchhhhHhhcCccchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcch
Confidence 3455789999999999999999999999999875432 3899999999999999999999999998543 69
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCC
Q 013611 104 ALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDV 183 (439)
Q Consensus 104 ~~~F~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (439)
+++|.++++.++++.++++.++++++..+|++ +++.+..+++..+.+++... .+.....+|+|.+....
T Consensus 161 ~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~g--s~l~~v~~vi~~a~~~~~~~------~~~~~~~~~ld~a~~~~--- 229 (654)
T TIGR00926 161 PLAFGVPAILMILALIVFMAGSKMYKKKPPKG--NIVSKVIKCIVTALRKRFST------RSEHWPLHWLDYAKDKH--- 229 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCCCCCc--cHHHHHHHHHHHHHHHhhcc------CCcccchhHHHHhcccc---
Confidence 99999999999999999999999887766655 77777777777776553221 01111246777655332
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhh
Q 013611 184 SLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIY 263 (439)
Q Consensus 184 ~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~ 263 (439)
+.++++++|++++++++++..++||+.+.|+.+.++.|+.+++++++ ++.+|+++++.+|++.++++.|++
T Consensus 230 --------~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~-g~~ip~~~lq~~n~L~IIil~Pi~ 300 (654)
T TIGR00926 230 --------DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVG-GFEIQPDQMQVVNPLLILIFVPIF 300 (654)
T ss_pred --------ccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccC-CEecCHHHHHHHHHHHHHHhHHHH
Confidence 13468899999999999999999999999999999999999988887 889999999999999999999999
Q ss_pred hhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------
Q 013611 264 DCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETA------------------------------- 312 (439)
Q Consensus 264 ~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~------------------------------- 312 (439)
+..++|..+|++.+ +++.+|+.+|+++.+++++++...|.++++..
T Consensus 301 ~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (654)
T TIGR00926 301 DYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQLKVNPTLPEEPSANEIFLQVLNTDCTICDFSVLSKRVL 377 (654)
T ss_pred HHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcceEEEEecCCCCcceEEEEecCCc
Confidence 99899988776433 68899999999999999999999888766100
Q ss_pred ---------hh-------------h---------------------------------C----C------C---------
Q 013611 313 ---------KE-------------Y---------------------------------G----L------I--------- 318 (439)
Q Consensus 313 ---------~~-------------~---------------------------------~----~------~--------- 318 (439)
.. . + . .
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (654)
T TIGR00926 378 PHDVYLHLDKKNTSGDQGLFTTKSSAKGWTLTYDLSYDGACGLTGNCPKTTDAHELEPKISYVLLLSQGGYQLTANTDKP 457 (654)
T ss_pred ccccccccCccccccccccccccccccccceEEEEeccccccccCCCCccccceeecCCceEEEEEecCCcceeeeeecC
Confidence 00 0 0 0 0
Q ss_pred --------------------------------------------------------------------------------
Q 013611 319 -------------------------------------------------------------------------------- 318 (439)
Q Consensus 319 -------------------------------------------------------------------------------- 318 (439)
T Consensus 458 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 537 (654)
T TIGR00926 458 TDAKTEKGMGSVRLVNTLNGEFGMISLCTSDSDSVTPCNPRDPYDFYFRGTKYPANTCDRIDNAKSSTFLSNQLDMGIYY 537 (654)
T ss_pred ccCCCCCCCceEEEEecCCCcceeeEEecccCcccccCCcccccccccccceeeeeecccccccccccccccccccceEE
Confidence
Q ss_pred ----CCC-------------CCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhh
Q 013611 319 ----DKP-------------NVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLS 381 (439)
Q Consensus 319 ----~~~-------------~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig 381 (439)
++. +.+.+++++|+++|+++.++||.+.+++.+|+.++++|++||+..+++|.++.++|+.+.
T Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~ 617 (654)
T TIGR00926 538 LIVITENSKIDELQAQIVELVSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIV 617 (654)
T ss_pred EEEEcCCCCCCcceeEEEEecCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 001125579999999999999999999999999999999999999999999999999987
Q ss_pred hHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhccC
Q 013611 382 SILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSY 435 (439)
Q Consensus 382 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~ 435 (439)
..+...=.. .+.+..|+.+++++++-.++|.++++.|
T Consensus 618 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~f~~~a~~Y 654 (654)
T TIGR00926 618 VVIAEFENF-----------------SVQAAEFFLFASLMLVVMAIFSILAYFY 654 (654)
T ss_pred HHHHHhhcC-----------------hHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 655443221 1234568888899999999999888765
No 6
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=100.00 E-value=6.5e-32 Score=277.76 Aligned_cols=357 Identities=15% Similarity=0.188 Sum_probs=261.0
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHH
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIP 110 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~ 110 (439)
+.+.++++|.++|+|.|+++|+..++++|++|+++++ +|+++++++|++.|+|.++||.+++++.+++||++.|.++
T Consensus 101 ~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~---~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~ 177 (475)
T TIGR00924 101 YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP---RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLA 177 (475)
T ss_pred cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc---cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 4567888999999999999999999999999876521 2889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcceeeecCCCCCCcch----h-HH--H----HHHHHhHhhccccCcchhhcccccchhhhhh---
Q 013611 111 CAFMVAALVLFLLGTKTYRFSIKSKQRNPFA----R-IG--R----VFVVAIKTRKATLASEDEAQSSQQFKFLNKA--- 176 (439)
Q Consensus 111 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~----~-~~--~----~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--- 176 (439)
++.++++.+++++.++.+++.++++ ++.. + .. . .+....+..... . + ....+.+...
T Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~-~~~~~~~~~~~~~ 248 (475)
T TIGR00924 178 AVGMVIGLLTFFAGRHMLRDIGSVP--DPLSGQGKTYGKLLLALLAALALVFFCAWLM-H-----H-VVIANILLMTVTL 248 (475)
T ss_pred HHHHHHHHHHHHHcccccccCCCCC--CCcchhhhhhHHHHHHHHHHHHHHHHHHHHH-h-----c-cHHHHHHHHHHHH
Confidence 9888888877777777665443222 1111 0 00 0 000100000000 0 0 0000000000
Q ss_pred -hhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-hhcccCCCCCccccchhhhhhHHH
Q 013611 177 -LLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQG-ATMDRTITRSIKIPAASLQLFIGI 254 (439)
Q Consensus 177 -~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~g~g~~~~~~~~~~in~~ 254 (439)
...+. .... ...+.++ +++++..+++++++..+++|+.|+|+.++++.+. +++|++.+ ++.+|+++++++|++
T Consensus 249 ~~~~~~--~~~~-~~~~~~~-~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~-~~~ip~~~~~~~n~~ 323 (475)
T TIGR00924 249 AVIIFF--FRLA-FKPRLDA-VARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML-GMSVPVIWFQSLNPF 323 (475)
T ss_pred HHHHHH--HHHH-HhccCCH-HHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-ceEECHHHHHhhhHH
Confidence 00000 0000 0001122 2344556688889999999999999999887554 45787777 889999999999999
Q ss_pred HHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHH
Q 013611 255 GIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIP 334 (439)
Q Consensus 255 ~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 334 (439)
.++++.|+.++++.++.+|. .+ .+...|+.+|+++.++++..+++.... .++ +.++++||+++
T Consensus 324 ~iil~~p~~~~~~~~l~~~~-~~---~~~~~k~~~G~~l~~~~~~~~~~~~~~----~~~---------~~~~s~~~~i~ 386 (475)
T TIGR00924 324 WVVVGSPVLAMIWTRLGRKG-KD---PTTPLKFTLGMLFCGASFLTFAASIWF----ADA---------GGLTSPWFMVL 386 (475)
T ss_pred HHHHHHHHHHHHHHHHHhCC-CC---CCcHHHHHHHHHHHHHHHHHHHHHHhh----cCC---------CCccCHHHHHH
Confidence 99999999998776666542 22 467779999999999999888876321 100 12478999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHH
Q 013611 335 QYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFY 414 (439)
Q Consensus 335 ~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f 414 (439)
++++.|+||++..|..++++++.+|+++||+++|++.+...+|+.+++.+.+..... .+...+|
T Consensus 387 ~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~----------------~~~~~~~ 450 (475)
T TIGR00924 387 IYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP----------------QGVTGVF 450 (475)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------cchhhHH
Confidence 999999999999999999999999999999999999999999999999888866421 2235578
Q ss_pred HHHHHHHHHHHHHHHHHhccCcc
Q 013611 415 WLLAALSAGGLLAFLYFAKSYNR 437 (439)
Q Consensus 415 ~~~~~l~~l~~~i~~~~~~~~~~ 437 (439)
..+++++++.+++++.+.++++|
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~k 473 (475)
T TIGR00924 451 GKIGLVTLLVGVVMALMVPWLNR 473 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 88899999999999998888776
No 7
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=100.00 E-value=2.3e-31 Score=275.29 Aligned_cols=362 Identities=15% Similarity=0.230 Sum_probs=257.9
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHH
Q 013611 32 IIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPC 111 (439)
Q Consensus 32 ~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~~ 111 (439)
.+.+.+++.++++|.|.++|+..++++++||+++++ |+++++++|++.|+|+++||.++|++.+++|||+.|.+++
T Consensus 112 ~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~ 187 (500)
T PRK09584 112 AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSV 187 (500)
T ss_pred HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 456778999999999999999999999999877643 6789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcceeeecCCCCCCcchhH------HHHHHHHh-HhhccccCcchhhcccccchhhhhhhhcC-CCC
Q 013611 112 AFMVAALVLFLLGTKTYRFSIKSKQRNPFARI------GRVFVVAI-KTRKATLASEDEAQSSQQFKFLNKALLAT-PDV 183 (439)
Q Consensus 112 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 183 (439)
+.++++++.+++.++.+++..++.+.+|.+.. ..+..... ..+... +.+ +.+...... ...
T Consensus 188 i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~---~~~~~~~~~~~~~ 256 (500)
T PRK09584 188 VGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLH--------NQE---IARMALGVVALGI 256 (500)
T ss_pred HHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHh--------cch---HHHHHHHHHHHHH
Confidence 88888887776666655433111111222211 11111111 111000 000 000000000 000
Q ss_pred CCCCC-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhh-cccCCCCCccccchhhhhhHHHHHHHHHH
Q 013611 184 SLEDG-KLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGAT-MDRTITRSIKIPAASLQLFIGIGIITFIP 261 (439)
Q Consensus 184 ~~~~~-~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~-~~~~~g~g~~~~~~~~~~in~~~iii~~p 261 (439)
..... ..++.++ +|+++.+..+.+++..++||+.|.|+++.+..|..+ ++++.. |+.+|+++++++|++.++++.|
T Consensus 257 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~-g~~i~~~~~~s~n~i~iil~~p 334 (500)
T PRK09584 257 VVIFGKEAFAMKG-AARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL-GIAVEPEQYQALNPFWIMIGSP 334 (500)
T ss_pred HHHHHHHHhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcccccc-ceEECHHHHHHHhHHHHHHHHH
Confidence 00000 0011122 345566666778888999999999999999887754 566666 8899999999999999999999
Q ss_pred hhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHH
Q 013611 262 IYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGI 341 (439)
Q Consensus 262 l~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gi 341 (439)
+.++++.++.+| .++.+|+.+|+++.++++..+.....+ .+++ ..++.+|+++++++.|+
T Consensus 335 ~~~~~~~~l~~r-------~~~~~~~~~G~~l~~l~f~~l~~~~~~----~~~~---------~~vs~~~~~~~~~l~~~ 394 (500)
T PRK09584 335 ILAAIYNKMGDR-------LPMPHKFAIGMVLCSGAFLVLPLGAKF----ANDA---------GIVSVNWLIASYGLQSI 394 (500)
T ss_pred HHHHHHHHhCcC-------CCcHHHHHHHHHHHHHHHHHHHHHHHh----cCCC---------CccCHHHHHHHHHHHHH
Confidence 999987665544 367899999999999999998876431 1111 24788899999999999
Q ss_pred HHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc-cccCCCCCCCCCCCcccchhhHHHHHHHHH
Q 013611 342 ADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE-ATSRDGGDSWFADNLNRAHLDYFYWLLAAL 420 (439)
Q Consensus 342 ge~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l 420 (439)
||++.+|.+.+++.+.+|+++||++||+|++..++|+.+++.+.+.+.. ....++ ....+.+..+|..++++
T Consensus 395 ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~~f~~~~~~ 467 (500)
T PRK09584 395 GELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDP-------LMSLEVYGRVFLQIGIA 467 (500)
T ss_pred HHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc-------hhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888875531 100111 00112367788888888
Q ss_pred HHHHHHHHHHHhccCcc
Q 013611 421 SAGGLLAFLYFAKSYNR 437 (439)
Q Consensus 421 ~~l~~~i~~~~~~~~~~ 437 (439)
+++.+++++...++++|
T Consensus 468 ~~~~a~~~~~~~~~~~k 484 (500)
T PRK09584 468 TAVIAVLMLLTAPKLNR 484 (500)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88777777777776554
No 8
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=99.98 E-value=1.6e-32 Score=273.93 Aligned_cols=323 Identities=37% Similarity=0.601 Sum_probs=224.8
Q ss_pred CCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhh
Q 013611 27 PHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALG 106 (439)
Q Consensus 27 ~~~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~ 106 (439)
+...+.+.+++++.++++|+|++|||+.++++|||++++++ +|+++|+|+|+++|+|+++++.+.+++++++||.+.
T Consensus 28 ~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~---~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~ 104 (372)
T PF00854_consen 28 PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDS---RRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLG 104 (372)
T ss_dssp ------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTT---HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHH
T ss_pred hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchh---hhhhhHHHHHHHHhhhhHhhcccchhhccccchhhh
Confidence 44556889999999999999999999999999999987422 399999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCcceeee-cCCCCCCcchhHH-HHHHHHhHhhccccCcchhhcccccchhhhhhhhcCC---
Q 013611 107 FGIPCAFMVAALVLFLLGTKTYRFS-IKSKQRNPFARIG-RVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATP--- 181 (439)
Q Consensus 107 F~i~~~~~~i~~~l~~~~~~~~~~~-~~~~~~~~~~~~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 181 (439)
|.++++.+++++++++.++++|+.. +|++ ++..+.. .++..+.++.....| +..+|++.......
T Consensus 105 f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 174 (372)
T PF00854_consen 105 FGIPAIGMLLALIVFLSGRKRYRKVAPPGG--SPLTNFIKLVLVAAFKKRKLAVP--------KGSSWLDWALFQYSERS 174 (372)
T ss_dssp HHHHHHHHHHHHHHHHCCCCTT--S-------S--S--SHHHHHHHHHHHCCCH---------HHHHHHHHHHHHHCCCC
T ss_pred hhHHHHHHHHHHHHHHhCCcCCcCcCccCC--cccchhHHHHHHHHHHHhhcccc--------cchHHHHHhhhhhhhhh
Confidence 9999999999999999999988876 4444 6666633 334344444333221 11122222221100
Q ss_pred -C-------------CCCCCCCC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCC-ccccc
Q 013611 182 -D-------------VSLEDGKL-CTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRS-IKIPA 245 (439)
Q Consensus 182 -~-------------~~~~~~~~-~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g-~~~~~ 245 (439)
. .....+.. .+.+++++.|.+.+.++.+...+.|+..+.|...+...|..++|+..+ + +.+|+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ip~ 253 (372)
T PF00854_consen 175 IFGIIVFIRAAVIFFPEIFFWALFCQVQRVEELKALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIG-GLFGIPP 253 (372)
T ss_dssp CCCCCCHHHHHHHHCCCHHHHTTTSSTTTHHHCCHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS-------S
T ss_pred hhhhhhhccchhhhhhhhhhcccCCccceeeeeeeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccc-ccccccc
Confidence 0 00001111 224567777778888888888888888888888878888878887777 6 89999
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611 246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI 325 (439)
Q Consensus 246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (439)
++++++|++.+++++|+++++++|+.++. .+ .+++.|+.+|+++..+++++....+.+|....++.|
T Consensus 254 ~~l~~~n~i~iii~~pi~~~~~~p~~~~~-~~---~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~--------- 320 (372)
T PF00854_consen 254 AWLQSFNPIFIIIFIPILDRVVYPLLRRG-IQ---PSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG--------- 320 (372)
T ss_dssp GGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHHHHHH-HHHHHHHHTTTHHHH---HH----T---------
T ss_pred chhhhHHHHHHHHHHHHHHHHHhHHhhhc-cc---chhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC---------
Confidence 99999999999999999999999999832 33 589999999999999999999988876554444333
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhh
Q 013611 326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGV 376 (439)
Q Consensus 326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~i 376 (439)
..+.+|+++.+++.+++|.+..+.+.+.+++.+|++..+.++|+|+....+
T Consensus 321 ~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~~~~ 371 (372)
T PF00854_consen 321 KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFALSAF 371 (372)
T ss_dssp T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHHH--
T ss_pred CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHHhcc
Confidence 345588889999999999999998889888888888888888888776543
No 9
>PRK03545 putative arabinose transporter; Provisional
Probab=99.75 E-value=9.2e-16 Score=154.02 Aligned_cols=289 Identities=13% Similarity=0.109 Sum_probs=179.3
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH
Q 013611 29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFG 108 (439)
Q Consensus 29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~ 108 (439)
..+.+.+.+.|+++|++.+...|...+++.|++|+++ |+++++++..+.++|.++||.+++.+.+.+|||+.|+
T Consensus 94 ~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~ 167 (390)
T PRK03545 94 AWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFL 167 (390)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHH
Confidence 3467889999999999999999999999999999877 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCC
Q 013611 109 IPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDG 188 (439)
Q Consensus 109 i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (439)
+.++..++..+..+...++ +|++++++..+ +
T Consensus 168 ~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~-----------------------------~---------------- 198 (390)
T PRK03545 168 AIGGGALITLLLLIKLLPL----LPSEHSGSLKS-----------------------------L---------------- 198 (390)
T ss_pred HHHHHHHHHHHHHHHhCCC----CCCCCcchHHH-----------------------------H----------------
Confidence 9887666554433322121 11110010000 0
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhh
Q 013611 189 KLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFV 268 (439)
Q Consensus 189 ~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~ 268 (439)
.++...+.+...... .......+....+....... + ..| ......+.+..+..+..++..++.+++.
T Consensus 199 -----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~--~-~~g-~s~~~~~~~~~~~~~~~~~g~~~~g~l~- 265 (390)
T PRK03545 199 -----PLLFRRPALVSLYLL---TVVVVTAHFTAYSYIEPFVQ--Q-VAG-LSENFATLLLLLFGGAGIIGSVLFSRLG- 265 (390)
T ss_pred -----HHHHhCcHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-hcC-CCccHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 001111111111111 11111111111121111111 1 111 0011223344444444454444444432
Q ss_pred hhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 013611 269 PITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIV 348 (439)
Q Consensus 269 ~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~ 348 (439)
+|. + ++++.++..+.+++........ .+.+.+++..++.|++.....+
T Consensus 266 ---dr~-------~-~~~~~~~~~~~~~~~~~l~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~ 313 (390)
T PRK03545 266 ---NRH-------P-SGFLLIAIALLLVCLLLLLPAA---------------------NSEWHLSVLSIFWGIAIMCIGL 313 (390)
T ss_pred ---hcc-------c-hhHHHHHHHHHHHHHHHHHHHh---------------------chHHHHHHHHHHHHHHHhcchH
Confidence 332 1 2345566665555554433221 2455666777888999887777
Q ss_pred hhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHH
Q 013611 349 GLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAF 428 (439)
Q Consensus 349 ~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~ 428 (439)
.....+.+..| +.+++++|+++....+|..+|+.+.|.+.+. .++...|...+.+.+++.+++
T Consensus 314 ~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~----------------~g~~~~~~~~~~~~~~~~~~~ 376 (390)
T PRK03545 314 AMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLH----------------LGLSSIGYVGAALALAALVWS 376 (390)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------cChhHHHHHHHHHHHHHHHHH
Confidence 77778888777 5889999999999999999999999988742 234567888888888888877
Q ss_pred HHHhcc
Q 013611 429 LYFAKS 434 (439)
Q Consensus 429 ~~~~~~ 434 (439)
+...|+
T Consensus 377 ~~~~~~ 382 (390)
T PRK03545 377 ILIFRR 382 (390)
T ss_pred HHHccc
Confidence 766654
No 10
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.73 E-value=1.2e-15 Score=153.97 Aligned_cols=293 Identities=15% Similarity=0.119 Sum_probs=179.5
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI 109 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i 109 (439)
.+.+.+++.+++.|++.|...|...+++.|.+|+++ |++++++.+...++|..+||.+++++. .++|++.|++
T Consensus 97 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~ 169 (400)
T PRK11646 97 HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCAT 169 (400)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHH
Confidence 357788899999999999999999999999999876 999999999999999999999999998 6899999999
Q ss_pred HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCC
Q 013611 110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGK 189 (439)
Q Consensus 110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (439)
.++..++..++..+..++.+ ++.++++..+ ++
T Consensus 170 ~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~----------------------------~~----------------- 201 (400)
T PRK11646 170 GAVLFVLAAAFNAWLLPAYK---LSTVRTPVRE----------------------------GM----------------- 201 (400)
T ss_pred HHHHHHHHHHHHHHhCCccc---ccccchhhHH----------------------------HH-----------------
Confidence 88766655443332222111 0000000000 00
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhh
Q 013611 190 LCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVP 269 (439)
Q Consensus 190 ~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~ 269 (439)
......+++.. ..+....++..+.+....++...+ + . + +.....+++..++....+.......+
T Consensus 202 ----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~p~~~~--~-~-~-~~~~~~g~l~~~~~~~~~~~~~~~~~---- 265 (400)
T PRK11646 202 ----TRVLRDKRFVT---YVLTLTGYYMLAVQVMLMLPIMVN--D-I-A-GSPSAVKWMYAIEACLSLTLLYPIAR---- 265 (400)
T ss_pred ----HHHHcCchHHH---HHHHHHHHHHHHHHHHHhhhhhHH--h-h-c-CCchHHHHHHHHHHHHHHHHHHHHHH----
Confidence 00011111111 111112222222232222222111 1 1 1 11122334444444443332222222
Q ss_pred hcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhh
Q 013611 270 ITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVG 349 (439)
Q Consensus 270 ~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~ 349 (439)
+.+|+ .+..+++..+.++.++++..+...+ +.++.++...+.++|+++..|.
T Consensus 266 ~~~~r------~~~~~~~~~~~~~~~~~~~~l~~~~----------------------~~~~~~~~~~l~~~g~~~~~p~ 317 (400)
T PRK11646 266 WSEKR------FRLEHRLMAGLLIMSLSMFPIGMVS----------------------NLQQLFTLICLFYIGSIIAEPA 317 (400)
T ss_pred HHHHh------cchhHHHHHHHHHHHHHHHHHHHhh----------------------hHHHHHHHHHHHHHHHHHHHcc
Confidence 23322 1334456777777777766655432 3444555567788999988888
Q ss_pred hHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHH
Q 013611 350 LQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFL 429 (439)
Q Consensus 350 ~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~ 429 (439)
....+.+.+|++.||+++|+.++..++|+.+|+.+.|.+.+.... .+.....|+..+.+++++.+...
T Consensus 318 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 385 (400)
T PRK11646 318 RETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKA------------LNQPELPWMMLGIIGLITLLALY 385 (400)
T ss_pred HHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhh------------cCCcchHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999998754210 01123456666666777666655
Q ss_pred HHhc
Q 013611 430 YFAK 433 (439)
Q Consensus 430 ~~~~ 433 (439)
...|
T Consensus 386 ~~~~ 389 (400)
T PRK11646 386 WQFS 389 (400)
T ss_pred HHHh
Confidence 4333
No 11
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.71 E-value=1.3e-14 Score=145.91 Aligned_cols=285 Identities=13% Similarity=0.098 Sum_probs=178.8
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHH
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIP 110 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~ 110 (439)
+...+++.|++.|+|.+...|+..+.+.+++|+++ |+++++++..+.++|..+|+.+++++.+.+||++.|++.
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 184 (399)
T PRK05122 111 SLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLI 184 (399)
T ss_pred HHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 45678999999999999999999999999999887 999999999999999999999999999999999998876
Q ss_pred HHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCCC
Q 013611 111 CAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKL 190 (439)
Q Consensus 111 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (439)
.+..++... +.++ .+++++++ ++ ..++
T Consensus 185 ~~~~~~~~~---~~~~-~~~~~~~~--~~-----------------------------~~~~------------------ 211 (399)
T PRK05122 185 MLLALLGLL---LARP-RPAVPPVK--GE-----------------------------RLPF------------------ 211 (399)
T ss_pred HHHHHHHHH---HHhc-CCCCCCCC--cc-----------------------------chhH------------------
Confidence 654333222 2111 11111100 00 0000
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhhh
Q 013611 191 CTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPI 270 (439)
Q Consensus 191 ~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~~ 270 (439)
.+..|+.......+ ..+...+....+....... +.+ . -..+.......+..++..++.+++.
T Consensus 212 -----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~----~-~~~~~~~~~~~~~~~~~~~~~g~l~--- 273 (399)
T PRK05122 212 -----RRVLGRVWPYGMGL---ALASIGFGTIATFITLYYA--ARG----W-DGAALALTLFGVAFVGARLLFGNLI--- 273 (399)
T ss_pred -----HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH--Hcc----c-ccchHHHHHHHHHHHHHHHHHHHHH---
Confidence 00011111111110 1111111111122221111 111 1 0112233334444444444444433
Q ss_pred cccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhh
Q 013611 271 TRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGL 350 (439)
Q Consensus 271 ~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~ 350 (439)
+|. ++++.+.++.++.++++...... .+.++.++..++.|++.....+..
T Consensus 274 -~r~-------~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~G~~~~~~~~~~ 323 (399)
T PRK05122 274 -NRL-------GGLRVAIVSLLVEILGLLLLWLA----------------------PSPWMALIGAALTGFGFSLVFPAL 323 (399)
T ss_pred -HHh-------ccHHHHHHHHHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHHhHHHHHHHH
Confidence 332 33345566767777766555443 134556677788999998888777
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHH
Q 013611 351 QEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLY 430 (439)
Q Consensus 351 ~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~ 430 (439)
...+.+..|++.||+++|+++....+|..+++.+.+.+.+. .++...|...+++.+++.++.+.
T Consensus 324 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~----------------~g~~~~~~~~~~~~~~~~~~~~~ 387 (399)
T PRK05122 324 GVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW----------------FGYPSIFLAAALAALLGLALTWL 387 (399)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------cCHHHHHHHHHHHHHHHHHHHHH
Confidence 77788899999999999999999999999999988877642 23466777888888888777777
Q ss_pred HhccCccC
Q 013611 431 FAKSYNRE 438 (439)
Q Consensus 431 ~~~~~~~~ 438 (439)
..+|.+++
T Consensus 388 ~~~~~~~~ 395 (399)
T PRK05122 388 LYRRAPRA 395 (399)
T ss_pred hccccccc
Confidence 66666554
No 12
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.70 E-value=3.6e-15 Score=148.12 Aligned_cols=317 Identities=13% Similarity=0.055 Sum_probs=173.5
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHH
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIP 110 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~ 110 (439)
+.+.++++|++.|+|.|...|...+++.+.+|+++ |++++++.....++|.++|+.+++++.+..+||+.|.+.
T Consensus 81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 154 (399)
T TIGR00893 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIE 154 (399)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 67889999999999999999999999999999876 999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCCC
Q 013611 111 CAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKL 190 (439)
Q Consensus 111 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (439)
++..++..++.++..++.+.++... + .+ . +.... ... ..|...... ....+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~-~-------~~~~~---------~~~---~~~~~~~~~---~~~~~~- 206 (399)
T TIGR00893 155 GVLGIIWGVLWLKFIPDPPQKAKWL--T--EE-E-------KYIVV---------GGL---LAEQQGKGP---STPKKY- 206 (399)
T ss_pred HHHHHHHHHHhhheecCCCCccccC--C--HH-H-------Hhhcc---------hhh---ccccccccc---cCCCcc-
Confidence 8666655544333222111100000 0 00 0 00000 000 000000000 000000
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhhh
Q 013611 191 CTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPI 270 (439)
Q Consensus 191 ~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~~ 270 (439)
+..+....++. ....+........+....+.++....+ ..+ ......+.+..+..+..++..++.+++.+++
T Consensus 207 -~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 278 (399)
T TIGR00893 207 -QIKELLKDRRV---WGLALGQFLVNIGLGFFLTWFPTYLVQ---ERG-LSILEAGFMASLPGIVGFIGMILGGRLSDLL 278 (399)
T ss_pred -chHHHhcCHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHH---Hhc-ccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00011111112 222222222222222222222221111 111 0122334555666666667777777776655
Q ss_pred cccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhh
Q 013611 271 TRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGL 350 (439)
Q Consensus 271 ~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~ 350 (439)
.+|+ . .+........++.......... .+ ...+.+..+....+...+.+ ..+..
T Consensus 279 ~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~-------~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~ 332 (399)
T TIGR00893 279 LRRG-------K---SLVFARKTAIIAGLVLSLLMFA-------TN--------YVNIPYAALALVALGFFGLG-AGAIG 332 (399)
T ss_pred hhcc-------c---chhHHHHHHHHHHHHHHHHHHH-------hc--------cchhHHHHHHHHHHHHhchh-hhhHH
Confidence 4432 0 0111111111111111111000 00 00122333333333333333 67777
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHH
Q 013611 351 QEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLY 430 (439)
Q Consensus 351 ~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~ 430 (439)
..++.+..|++.||+++|+.+...++|+.+++.+.+.+.+.. +++...|...+++.+++.+.++.
T Consensus 333 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~---------------g~~~~~~~~~~~~~~~~~~~~~~ 397 (399)
T TIGR00893 333 WALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT---------------GSFAGALMVVAALALIGALSYLL 397 (399)
T ss_pred HHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC---------------CchhHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999886421 22466777777777777666554
No 13
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.70 E-value=5.7e-15 Score=148.67 Aligned_cols=299 Identities=12% Similarity=0.089 Sum_probs=181.1
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI 109 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i 109 (439)
.+.+.+++.|++.|++.+ ..|...+.+.+++|+++ |++++++...+.++|.++||.+++++.+..+|++.|++
T Consensus 105 ~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 177 (408)
T PRK09874 105 QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFI 177 (408)
T ss_pred hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 467788999999999865 46888889999998876 99999999999999999999999999998999999999
Q ss_pred HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCC
Q 013611 110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGK 189 (439)
Q Consensus 110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (439)
.++..++..++.++..++.. +++++ +... ++.|...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~-----------------------------~~~~~~~------------ 213 (408)
T PRK09874 178 TASVLFLCFLVTLFCIRENF--QPVSK-KEML-----------------------------HMREVVT------------ 213 (408)
T ss_pred HHHHHHHHHHHHHHHhccCc--ccccc-hhhh-----------------------------HHHHHHH------------
Confidence 88776665554333222111 11110 0000 0000000
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhh
Q 013611 190 LCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVP 269 (439)
Q Consensus 190 ~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~ 269 (439)
...+++ ... .+......+........+.+............ ......+.+..+..+..++..|+.+++.+
T Consensus 214 -----~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~l~~~~~~~~~g~l~d- 283 (408)
T PRK09874 214 -----SLKNPK-LVL--SLFVTTLIIQVATGSIAPILTLYVRELAGNVS-NIAFISGMIASVPGVAALLSAPRLGKLGD- 283 (408)
T ss_pred -----hCcCCc-hHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 000011 111 01111111222221222222211111100100 00011223334444555555555555443
Q ss_pred hcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhh
Q 013611 270 ITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVG 349 (439)
Q Consensus 270 ~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~ 349 (439)
|. ++++.+.++..+.+++++..... .+.+...+..++.|++++...+.
T Consensus 284 ---r~-------g~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~ 331 (408)
T PRK09874 284 ---RI-------GPEKILITALIFSVLLLIPMSFV----------------------QTPLQLGILRFLLGAADGALLPA 331 (408)
T ss_pred ---cc-------ccchhHHHHHHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHhhhHhhHHH
Confidence 32 22334555655555554443332 13455566678889999998888
Q ss_pred hHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHH
Q 013611 350 LQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFL 429 (439)
Q Consensus 350 ~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~ 429 (439)
..+.+.+.+|++.+|+++|+++....+|..+|+.+.+.+.+. .++...|...+++.+++.+..+
T Consensus 332 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~----------------~g~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 332 VQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN----------------YGFRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred HHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh----------------cchhHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999999988642 2346678888888888887776
Q ss_pred HHhccCcc
Q 013611 430 YFAKSYNR 437 (439)
Q Consensus 430 ~~~~~~~~ 437 (439)
...+|.+.
T Consensus 396 ~~~~~~~~ 403 (408)
T PRK09874 396 NSLRRRRI 403 (408)
T ss_pred HHHHHhcC
Confidence 66665544
No 14
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.69 E-value=1.7e-14 Score=145.47 Aligned_cols=299 Identities=14% Similarity=0.110 Sum_probs=173.4
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI 109 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i 109 (439)
.+.+.+.+.|++.|++.|...|...+++.|++|+++ |++++++++.+.++|.++++.+++.+.+..+|++.|++
T Consensus 101 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 174 (406)
T PRK11551 101 WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYV 174 (406)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 467788999999999999999999999999999877 99999999999999999999999999998999999998
Q ss_pred HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCC
Q 013611 110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGK 189 (439)
Q Consensus 110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (439)
.++..++..++.....++....++++ +. ..+.....+..
T Consensus 175 ~~~~~~~~~~~~~~~l~~~~~~~~~~--~~--------------------------~~~~~~~~~~~------------- 213 (406)
T PRK11551 175 GGVGPLLLVPLLMRWLPESRAFAQAA--GA--------------------------GKQRAPVLRAL------------- 213 (406)
T ss_pred HHHHHHHHHHHHHHhCCCChhHHhcc--Cc--------------------------chhhhhhHHHH-------------
Confidence 77654544433322112111000000 00 00000000000
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhh
Q 013611 190 LCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVP 269 (439)
Q Consensus 190 ~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~ 269 (439)
++ +. ..++...+ +.........+....+.++.... +.+.. ....+.+.....+..++...+.+++.++
T Consensus 214 -~~--~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~--~~g~s---~~~~~~~~~~~~~~~~~~~~~~g~l~dr 281 (406)
T PRK11551 214 -FG--EG-RATATLLL---WISYFFTLIVLYFLLNWLPSLLV--GQGLS---RSQAGLVQIAFNIGGALGSLLIGALMDR 281 (406)
T ss_pred -hh--hh-hhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--hCCCC---hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00 00111111 11111111111111111111111 11111 1223344455555555555566665543
Q ss_pred hcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhh
Q 013611 270 ITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVG 349 (439)
Q Consensus 270 ~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~ 349 (439)
+.+ ++.+.++.+..++++...... .+.+.+.+..++.+++.....+.
T Consensus 282 ~g~-----------~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~ 328 (406)
T PRK11551 282 LRP-----------RRVVLLIYAGILASLAALAAA----------------------PSFAGMLLAGFAAGLFVVGGQSV 328 (406)
T ss_pred HhH-----------HHHHHHHHHHHHHHHHHHHhc----------------------CcHHHHHHHHHHHHHHHHhHHHH
Confidence 322 223333444444444333322 13444555667777777777777
Q ss_pred hHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHH
Q 013611 350 LQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFL 429 (439)
Q Consensus 350 ~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~ 429 (439)
..+++.+..|++.||+++|+.+....+|+.+|+.+.+.+.+.. +++...++..+...+++.++.+
T Consensus 329 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~---------------~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 329 LYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG---------------RSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC---------------CchHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999999999999999999999886421 2234455555556666655555
Q ss_pred HHhccC
Q 013611 430 YFAKSY 435 (439)
Q Consensus 430 ~~~~~~ 435 (439)
...+|-
T Consensus 394 ~~~~~~ 399 (406)
T PRK11551 394 LLVSRP 399 (406)
T ss_pred HHhcch
Confidence 554443
No 15
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.68 E-value=1.8e-15 Score=155.86 Aligned_cols=308 Identities=11% Similarity=0.093 Sum_probs=180.1
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI 109 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i 109 (439)
.+...++++|++.|+|.|...|...+++.+.+|+++ |++++++++.+.++|..+||.+++++.++++||+.|++
T Consensus 88 ~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~ 161 (485)
T TIGR00711 88 PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLI 161 (485)
T ss_pred CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhh
Confidence 467889999999999999999999999999999876 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHH-hHhhccccCcchhhcccccchhhhhhhhcCC-------
Q 013611 110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVA-IKTRKATLASEDEAQSSQQFKFLNKALLATP------- 181 (439)
Q Consensus 110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 181 (439)
.++..++..++.++..++. +++. .++.+.....+... ....... ....+..+|.+...+...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~---~~~~-~~~~d~~g~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (485)
T TIGR00711 162 NVPIGIIVVVVAFFILPRD---KPAA-SENFDFLGLLLLSVGLGSLLYG------LSEGPERGWFDSNEILILSITGLVA 231 (485)
T ss_pred hhHHHHHHHHHHHHHcCCc---cccc-cCCCcHHHHHHHHHHHHHHHHH------HhhCCCCCCCCchHHHHHHHHHHHH
Confidence 8876666555444333321 1111 12222211111100 0000000 011111223222110000
Q ss_pred --C----CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHH
Q 013611 182 --D----VSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIG 255 (439)
Q Consensus 182 --~----~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~ 255 (439)
. +.+.+....+. +....+.+ ....+........+......++...+ ...| ......+.......+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~g-~s~~~~g~~~~~~~~~ 303 (485)
T TIGR00711 232 IIAFVVWELTDDNPLVDL-RLFKYRNF---TIGCVYMSLLGLGLYGSFYLLPLYLQ---QVLG-YTALQAGLHILPVGLA 303 (485)
T ss_pred HHHHHHHHHcCCCCccCH-HHHcCCCh---HHHHHHHHHHHHHHHHHHHHHHHHHH---HhcC-CCHHHHHHHHHHHHHH
Confidence 0 00000000000 01111111 11111112222222222222222111 1111 1122234555666666
Q ss_pred HHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHH
Q 013611 256 IITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQ 335 (439)
Q Consensus 256 iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 335 (439)
.++..++.+++.+ |. ++++.+.+|..+.++++.++..... ...+.++.+..
T Consensus 304 ~~~~~~~~g~l~~----r~-------~~~~~~~~g~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~ 354 (485)
T TIGR00711 304 PMLSSPIAGRMGD----KI-------DPRKLVTIGLILYAVGFYWRAFTFT------------------PDTPFLAIALP 354 (485)
T ss_pred HHHHHHHHHHHHh----hc-------CcHHHHHHHHHHHHHHHHHHhccCC------------------CCCCHHHHHHH
Confidence 7777777776543 32 3344567777777777766552110 12345566677
Q ss_pred HHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611 336 YLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE 390 (439)
Q Consensus 336 ~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~ 390 (439)
.++.|+|.+...++....+.+..|++++|+++|+.++.+++|+.+|+.+.+.+.+
T Consensus 355 ~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 355 QFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999887777788899999999999999999999999999999987753
No 16
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.68 E-value=2.8e-14 Score=144.59 Aligned_cols=295 Identities=9% Similarity=-0.069 Sum_probs=176.2
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI 109 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i 109 (439)
.+.+.+.+.+++.|++.|...|...+.+.+.+|+++ |+++.++.+++.++|..+||.+++++.+..+|++.|.+
T Consensus 108 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~ 181 (417)
T PRK10489 108 PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGL 181 (417)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHH
Confidence 356778889999999999999999999999998876 89999999999999999999999999988899999998
Q ss_pred HHHHHHHHHHHHHhcCcceeeecCCCC--CCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCC
Q 013611 110 PCAFMVAALVLFLLGTKTYRFSIKSKQ--RNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLED 187 (439)
Q Consensus 110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (439)
.++..++..+..+..++ .+++++ .++..+ ..+.
T Consensus 182 ~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~-----------------------------~~~~------------ 216 (417)
T PRK10489 182 AAAGTFITLLPLLRLPA----LPPPPQPREHPLRS-----------------------------LLAG------------ 216 (417)
T ss_pred HHHHHHHHHHHHHhCCC----CCCCCcccccchHH-----------------------------HHHH------------
Confidence 88766665544332211 111110 000000 0000
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhh
Q 013611 188 GKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIF 267 (439)
Q Consensus 188 ~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~ 267 (439)
...+.+.+.+ +.. ++.... ..........++... ....+ ......+++.....+..++...+.+++.
T Consensus 217 -----~~~~~~~~~~-~~~--~~~~~~-~~~~~~~~~~~p~~~---~~~~g-~~~~~~g~~~~~~~~g~~ig~~~~~~l~ 283 (417)
T PRK10489 217 -----FRFLLASPVV-GGI--ALLGGL-LTMASAVRVLYPALA---DEVWQ-MGAAQIGLLYAAVPLGAALGALTSGWLA 283 (417)
T ss_pred -----HHHHHcChHH-HHH--HHHHHH-HHHHHhHHHhhHHHH---HhccC-CChhHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 0000011111 111 111111 111111112222111 11111 0012234455555555555544444432
Q ss_pred hhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHh
Q 013611 268 VPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTI 347 (439)
Q Consensus 268 ~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~ 347 (439)
+|. +..+.+..+.++.++++..+... .+.+...+..++.|++.+...
T Consensus 284 ----~~~-------~~~~~l~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~ 330 (417)
T PRK10489 284 ----HSA-------RPGLLMLLSTLGSFLAVGLFGLM----------------------PMWILAVLCLALFGYLSAISS 330 (417)
T ss_pred ----hcc-------CcchHHHHHHHHHHHHHHHHHcc----------------------chHHHHHHHHHHHHHHHHHHH
Confidence 221 22334556666666665544432 134445566777888888877
Q ss_pred hhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 013611 348 VGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLA 427 (439)
Q Consensus 348 ~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i 427 (439)
+...+++.+.+|++.||+++|+++....+|+.+|+.+.|.+.+.. +....+...++..++..++
T Consensus 331 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~----------------g~~~~~~~~~~~~~~~~~~ 394 (417)
T PRK10489 331 LLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM----------------TPVASASASGFGLLIIGVL 394 (417)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh----------------chhhHHHHHHHHHHHHHHH
Confidence 777788899999999999999999999999999999999887532 2233455555555555555
Q ss_pred HHHHhccCcc
Q 013611 428 FLYFAKSYNR 437 (439)
Q Consensus 428 ~~~~~~~~~~ 437 (439)
.+...+++++
T Consensus 395 ~~~~~~~~~~ 404 (417)
T PRK10489 395 LLLVLGELRR 404 (417)
T ss_pred HHHhcccccc
Confidence 5555455443
No 17
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.68 E-value=7.2e-15 Score=151.08 Aligned_cols=321 Identities=13% Similarity=0.101 Sum_probs=175.9
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc-ccchhhhHH
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDN-LNWALGFGI 109 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~-~g~~~~F~i 109 (439)
+...+++.|++.|+++|...|...+.+.+++|+++ |+++.++...+.++|.++|+.+++++.+. .+||+.|.+
T Consensus 130 ~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i 203 (465)
T TIGR00894 130 GIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYV 203 (465)
T ss_pred CchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhh
Confidence 35678889999999999999999999999999887 99999999999999999999999999988 499999999
Q ss_pred HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCC
Q 013611 110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGK 189 (439)
Q Consensus 110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (439)
.++..++..++++...++.+..+++. ++ . +.++++....... ....+.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~p~~~~~~--~~-~---------------------------~~~~i~~~~~~~~--~~~~~~ 251 (465)
T TIGR00894 204 FGIVGCAWSLLWFVFPADDPSIHPCI--SK-F---------------------------EKKYINSSLQGQK--GSTRQS 251 (465)
T ss_pred hhHHHHHHHHHHHHHhcCCcccCCCC--CH-H---------------------------HHHHHHhhccccc--CCCCCC
Confidence 88776666554433222111111100 00 0 0001100000000 000000
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhh
Q 013611 190 LCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVP 269 (439)
Q Consensus 190 ~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~ 269 (439)
....++...+.+. .+.+....+...+....+.++..... ..+.. ....+.+..+..+..++..++.+++.++
T Consensus 252 -~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~lp~~l~~-~~g~s---~~~~g~~~~~~~~~~~i~~~~~g~l~d~ 323 (465)
T TIGR00894 252 -LPIKAIPKSLPVW---AIWFAIFGHFWLYTILPTYLPTFISW-VLRVS---GKENGLLSSLPYLFAWLCSIFAGYLADF 323 (465)
T ss_pred -CCHHHHhcCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcC---hHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001111111111 11111111211122212222221111 11111 2234556667777778888888888877
Q ss_pred hcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhh
Q 013611 270 ITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVG 349 (439)
Q Consensus 270 ~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~ 349 (439)
+.+|+..+ ....+++..+..+...+......... ..+.++.+....+.+.+.....+.
T Consensus 324 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~l~~~~~~~~~~~ 381 (465)
T TIGR00894 324 LKSSKTLS---LTAARKIFNGIGGLGPGIFAYALPYL-------------------SAAFYLTIIILTLANAVSSGPLAG 381 (465)
T ss_pred HHHcCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHc-------------------CCchHHHHHHHHHHHHHhhhhhhh
Confidence 65543111 01112222222221111111111100 112333333344444444444444
Q ss_pred hHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHH
Q 013611 350 LQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFL 429 (439)
Q Consensus 350 ~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~ 429 (439)
......+.+|+ ..|+++|+.++...+|+.++|.+.+.+.+.. .| +.+...|.+.+++.+++.+++.
T Consensus 382 ~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~------~~-------~~~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 382 VLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQD------SK-------NVWLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred hhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCC------Cc-------hHHHHHHHHHHHHHHHHHHHee
Confidence 44455566776 8999999999999999999999988775321 01 3356678888888888887776
Q ss_pred HHhc
Q 013611 430 YFAK 433 (439)
Q Consensus 430 ~~~~ 433 (439)
...+
T Consensus 448 ~~~~ 451 (465)
T TIGR00894 448 IFGS 451 (465)
T ss_pred eeec
Confidence 5433
No 18
>PRK12382 putative transporter; Provisional
Probab=99.68 E-value=4.7e-14 Score=141.65 Aligned_cols=279 Identities=10% Similarity=0.126 Sum_probs=173.3
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI 109 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i 109 (439)
.+...++++|++.|+|.+...|...+.+.|.+|+++ |+++++++..+.++|.++||.+++++.+.+||++.+.+
T Consensus 110 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~ 183 (392)
T PRK12382 110 FKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALT 183 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence 467789999999999999999999999999999877 99999999999999999999999999999999988776
Q ss_pred HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCC
Q 013611 110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGK 189 (439)
Q Consensus 110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (439)
..+..++.. ++.++ .++++++++++ . ++.
T Consensus 184 ~~~~~~~~~---~~~~~-~~~~~~~~~~~--~-----------------------------~~~---------------- 212 (392)
T PRK12382 184 TMVLPLLAW---AFNGT-VRKVPAHAGER--P-----------------------------SLW---------------- 212 (392)
T ss_pred HHHHHHHHH---HHHHh-ccCCCCCcccC--c-----------------------------hHH----------------
Confidence 654332222 22111 11111110000 0 000
Q ss_pred CCchhhHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhh
Q 013611 190 LCTLEDVEEAKALLRL-IPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFV 268 (439)
Q Consensus 190 ~~~~~~v~~~k~~~~~-l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~ 268 (439)
+ ..|...+. ....+....+... ......... +... . ..+.......+..++..++.+++.+
T Consensus 213 -----~--~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~--~~~~----~-~~~~~~~~~~~~~~~~~~~~g~l~~ 274 (392)
T PRK12382 213 -----S--VVGLIWKPGLGLALQGVGFAVI----GTFVSLYFA--SKGW----A-MAGFTLTAFGGAFVLMRVLFGWMPD 274 (392)
T ss_pred -----H--HHHHHHHhHHHHHHHHHHHhHH----HHHHHHHHH--hcCC----c-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00111100 0011111111111 111111111 1111 1 1222333444444555555555443
Q ss_pred hhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 013611 269 PITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIV 348 (439)
Q Consensus 269 ~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~ 348 (439)
|. ++++.+..+..+.++++...... .+.++..+..++.+++++...+
T Consensus 275 ----r~-------g~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~ 321 (392)
T PRK12382 275 ----RF-------GGVKVAIVSLLVETVGLLLLWLA----------------------PTAWVALAGAALTGAGCSLIFP 321 (392)
T ss_pred ----hc-------CCCeehHHHHHHHHHHHHHHHHc----------------------ccHHHHHHHHHHHHHHHHhHHH
Confidence 32 22344566777777766554432 1344556677888999988888
Q ss_pred hhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHH
Q 013611 349 GLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAF 428 (439)
Q Consensus 349 ~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~ 428 (439)
.......+..|+++||+++|+++....+|+.+|+.+.+.+.+. .++...|.+.+++.+++.++.
T Consensus 322 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~----------------~g~~~~~~~~~~~~~~~~~~~ 385 (392)
T PRK12382 322 ALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS----------------FGYPSVFLAGAISAVLGIIVT 385 (392)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hCchHHHHHHHHHHHHHHHHH
Confidence 7777888999999999999999999999999999999988642 234567777777777776665
Q ss_pred HHHh
Q 013611 429 LYFA 432 (439)
Q Consensus 429 ~~~~ 432 (439)
+...
T Consensus 386 ~~~~ 389 (392)
T PRK12382 386 ILSF 389 (392)
T ss_pred Hhhc
Confidence 5443
No 19
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.68 E-value=7.8e-15 Score=152.10 Aligned_cols=307 Identities=14% Similarity=0.099 Sum_probs=174.7
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI 109 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i 109 (439)
.+.+.++++|.++|+|.|+..|...+.+.+.+++++ +|+++++++....++|..+||.+++++.++++|||.|++
T Consensus 92 ~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i 166 (495)
T PRK14995 92 PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLI 166 (495)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHH
Confidence 468889999999999999999999998988885432 299999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCC--------
Q 013611 110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATP-------- 181 (439)
Q Consensus 110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 181 (439)
+....++.+++.+...+..+.+ + +++.+.....+.... .....+. .+. ...+|++.......
T Consensus 167 ~~~~~~~~~~l~~~~l~~~~~~--~--~~~~d~~g~~~~~~~-~~~l~~~----~~~-~~~~~~~~~~~~~~~~~~~~~l 236 (495)
T PRK14995 167 NVPIVLVVMGLTARYVPRQAGR--R--DQPLNLGHALMLIVA-ILLLVYS----AKT-ALKGFLSLWVTSLTLLTGALLL 236 (495)
T ss_pred HHHHHHHHHHHHHHhCCCCCCC--C--CCCCChHhHHHHHHH-HHHHHHH----HHh-ccccCCchHHHHHHHHHHHHHH
Confidence 8877666655443333321111 1 122221111111000 0000000 000 00011111100000
Q ss_pred -C----CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHH
Q 013611 182 -D----VSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGI 256 (439)
Q Consensus 182 -~----~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~i 256 (439)
. +.+......+.+ .-..+.+.. ..+........+......++.. +....| ......+.......+..
T Consensus 237 ~~f~~~e~~~~~p~~~~~-lf~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---lq~v~g-~s~~~ag~~~~~~~~~~ 308 (495)
T PRK14995 237 GLFIRTQLAASRPMIDMR-LFTHRIILS---GVVMAMTAMITLVGFELLMAQE---LQFVHG-LSPLEAGMFMLPVMVAS 308 (495)
T ss_pred HHHHHHHhcCCCCCcCHH-HhCCcccHH---HHHHHHHHHHHHHHHHHHHHHH---HHHHcC-CCHHHHHHHHHHHHHHH
Confidence 0 000000001111 111111111 1111111111111111111211 111111 11233444555556666
Q ss_pred HHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHH
Q 013611 257 ITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQY 336 (439)
Q Consensus 257 ii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 336 (439)
.+..|+.+++.+ |. ++++.+..|+++.++++..+..... ..+.+...+..
T Consensus 309 ~~~~~~~g~l~~----r~-------g~~~~~~~g~~~~~~~~~~l~~~~~-------------------~~~~~~~~~~~ 358 (495)
T PRK14995 309 GFSGPIAGILVS----RL-------GLRLVATGGMALSALSFYGLAMTDF-------------------STQQWQAWGLM 358 (495)
T ss_pred HHHHHHHHHHHH----Hc-------CchHHHHHHHHHHHHHHHHHHHhcC-------------------CCchHHHHHHH
Confidence 666677776554 32 2234556777777777665554321 12344456677
Q ss_pred HHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611 337 LLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN 389 (439)
Q Consensus 337 ~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~ 389 (439)
++.|+|.++..++....+.+.+|++.+|.+++++++.+++|+.+|+.+.+.+.
T Consensus 359 ~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~ 411 (495)
T PRK14995 359 ALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLL 411 (495)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999998888889999999999999999999999999999999999774
No 20
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.68 E-value=1.1e-14 Score=143.54 Aligned_cols=271 Identities=13% Similarity=0.077 Sum_probs=167.6
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHH
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIP 110 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~ 110 (439)
+.+.+++.|++.|++.+...|...+++.|++|+++ |+++++++..+.++|.++||.+++++.+..+|++.|++.
T Consensus 91 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 164 (365)
T TIGR00900 91 NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD 164 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 67889999999999999999999999999999876 999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCCC
Q 013611 111 CAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKL 190 (439)
Q Consensus 111 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (439)
++..++..+..+..+.+ + +++.++++..+ ....+..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~------------------------~~~~~~~~~--------------- 202 (365)
T TIGR00900 165 AVGFAISALLIVSVRIP--E-LAASEIQALSN------------------------AVLRDTREG--------------- 202 (365)
T ss_pred HHHHHHHHHHHHhcccc--c-CCCccccccch------------------------hHHHHHHhH---------------
Confidence 87666555443332211 1 11100000000 000000000
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhh
Q 013611 191 CTLEDVEEAKALLRLIPIWATCLVYAIVFAQYT-TFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVP 269 (439)
Q Consensus 191 ~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~-~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~ 269 (439)
.+...+.+.+.. .......+...+.... ...+....+. .+.. ....+.+.....+..++..++.+++.
T Consensus 203 --~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~-- 271 (365)
T TIGR00900 203 --IKFVLKNPLLRT---LLLLALLFNLVFAPAIVALFPYVQSKY-LGRG---STHYGWVLAAFGLGALLGALLLGLLG-- 271 (365)
T ss_pred --HHHHHcCcHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHH-hCCc---hHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 000111111111 1111222222221111 1111111100 1111 12234445555555555555554432
Q ss_pred hcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhh
Q 013611 270 ITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVG 349 (439)
Q Consensus 270 ~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~ 349 (439)
+|. +.++.+..+.++.++++....... + +.+...+..++.|++.....+.
T Consensus 272 --~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--------------------~-~~~~~~~~~~~~g~~~~~~~~~ 321 (365)
T TIGR00900 272 --RYF-------KRMALMTGAIFVIGLAILVVGLTP--------------------P-NFPLFLVLWFAIGVGYGPINVP 321 (365)
T ss_pred --HHh-------chhHHHHHHHHHHHHHHHHHHhhc--------------------h-hHHHHHHHHHHHHHHHHHHHHH
Confidence 222 233444556666666655554431 1 3556677788999999999888
Q ss_pred hHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611 350 LQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE 390 (439)
Q Consensus 350 ~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~ 390 (439)
...++.+.+|++.||+++|+++....+|+.+++.+.+.+.+
T Consensus 322 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 322 QGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999998763
No 21
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.67 E-value=6e-14 Score=140.60 Aligned_cols=283 Identities=10% Similarity=-0.031 Sum_probs=178.8
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH
Q 013611 29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFG 108 (439)
Q Consensus 29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~ 108 (439)
..+.+.+++.+.+.+.+.+...|...++..+. +++ |+++++......++|.++||.+++++.+.+|||..|.
T Consensus 91 ~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~ 162 (382)
T TIGR00902 91 AHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILA 162 (382)
T ss_pred hhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHH
Confidence 45678888999999999999999998886543 223 8899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCC
Q 013611 109 IPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDG 188 (439)
Q Consensus 109 i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (439)
+..+...+....+.. ++.. +|+++++. ++...+
T Consensus 163 ~~~~~~~~~~~~~~~-~~~~---~~~~~~~~---------------------------~~~~~~---------------- 195 (382)
T TIGR00902 163 ILTAGLAFMLIGFLI-KPTI---PPKDAIPE---------------------------DESQGD---------------- 195 (382)
T ss_pred HHHHHHHHHHHHHHc-CCCC---CCCccccc---------------------------cccccc----------------
Confidence 876543333322221 1110 11110000 000000
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhh
Q 013611 189 KLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFV 268 (439)
Q Consensus 189 ~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~ 268 (439)
.+..++...|++.. +.+.....+..+.+..+..+...+ + .| ......+.+..+..+..++..++.++
T Consensus 196 --~~~~~~l~~~~~~~---~l~~~~l~~~~~~~~~~~~~~~l~--~--~g-~s~~~~g~l~~~~~~~~i~~~~~~~~--- 262 (382)
T TIGR00902 196 --SAFIALLKNPMNLR---FLAAVCLIQGAHAAYYGFSAIYWQ--A--AG-ISASATGLLWGIGVLAEIIIFAFSNK--- 262 (382)
T ss_pred --hhHHHHHcChHHHH---HHHHHHHHHHHHHHHHHHHHHHHH--H--CC-CCHhHHHHHHHHHHHHHHHHHHHhHH---
Confidence 00001111122222 222233333444444443333222 1 22 11222344444555555554444444
Q ss_pred hhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 013611 269 PITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIV 348 (439)
Q Consensus 269 ~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~ 348 (439)
+.+| .+.++.+.+|.++.++....+.+.+ +.+++++.++++|+.+++..+
T Consensus 263 -l~~r-------~g~~~~l~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~q~l~g~~~~~~~~ 312 (382)
T TIGR00902 263 -LFQN-------CSARDLLLISAIACVGRWAIIGAIE----------------------AFPLIFLLQILHCGTFAVCHL 312 (382)
T ss_pred -HHhh-------CCHHHHHHHHHHHHHHHHHHHHhHh----------------------hHHHHHHHHHHHHHHHHHHHH
Confidence 3344 3556677888888888887776542 566677778999999999988
Q ss_pred hhHHHHHhhcChhhHHHHHHHHH-HHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 013611 349 GLQEFFYDQIPKELKSFGLSIYM-SVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLA 427 (439)
Q Consensus 349 ~~~~~~~~~aP~~~~g~~~gl~~-~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i 427 (439)
....++.+. |++.+++++|+++ ...++|..+|+.++|.+.+.. + ...|+..+++++++.++
T Consensus 313 ~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~---------------g--~~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 313 AAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL---------------G--AGTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------c--HHHHHHHHHHHHHHHHH
Confidence 888999988 9999999999986 577899999999999887531 1 24577777777766433
No 22
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.66 E-value=1.7e-15 Score=154.18 Aligned_cols=315 Identities=18% Similarity=0.192 Sum_probs=200.0
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc-ccchhhhHH
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDN-LNWALGFGI 109 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~-~g~~~~F~i 109 (439)
+...+++.|+++|+++|...|+...+.+.|.|++| |+++.++.+.+..+|.+++..++|++.+. +||+.+|++
T Consensus 127 ~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~ 200 (466)
T KOG2532|consen 127 GFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYV 200 (466)
T ss_pred cchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHH
Confidence 44567999999999999999999999999999988 99999999999999999999999999998 999999999
Q ss_pred HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCC
Q 013611 110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGK 189 (439)
Q Consensus 110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (439)
.++..++..+++++. +.++ |++ +|.. ..++.+++++.+..... +
T Consensus 201 ~g~~g~i~~~~w~~~---~~d~-P~~--h~~i------------------------s~~El~~I~~~k~~~~~--~---- 244 (466)
T KOG2532|consen 201 FGIVGLIWFILWFLF---YSDS-PSK--HPNI------------------------SEKELKYIEKGKSEAHV--K---- 244 (466)
T ss_pred HHHHHHHHHHHHHHH---hcCC-ccc--CCCC------------------------CHHHHHHHHhccccccc--C----
Confidence 998888777766542 2222 222 2111 01111222222211100 0
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCcc-ccchhhhhhHHHHHHHHHHhhhhhhh
Q 013611 190 LCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIK-IPAASLQLFIGIGIITFIPIYDCIFV 268 (439)
Q Consensus 190 ~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~-~~~~~~~~in~~~iii~~pl~~~~~~ 268 (439)
+......|++++-.+++...+..+.-...........+.++...+ ++. -..|++.+++.+...+.-.+.+.+.+
T Consensus 245 ---~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL--~f~v~~~G~~salP~l~~~~~k~~~g~lsD 319 (466)
T KOG2532|consen 245 ---KKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVL--GFDVRETGFLSALPFLAMAIVKFVAGQLSD 319 (466)
T ss_pred ---CCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh--CCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 000113445555544444333322222222222222223333222 222 34578888999998888888888888
Q ss_pred hhcccccCCCCCCCchhHH--hHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHH-
Q 013611 269 PITRYFTQNPSGITMLQRI--GAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVF- 345 (439)
Q Consensus 269 ~~~~k~~~~~~~~~~~~~i--~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l- 345 (439)
++..| ... .+..+|+ .+++...++.++.+++... + .. + .+.++.+++.++
T Consensus 320 ~l~~~-~ls---~t~~rkifn~i~~~~~ai~l~~l~~~~~--------------~------~~-~--~a~~~l~~~~~~~ 372 (466)
T KOG2532|consen 320 RLTFR-ILS---ETTVRKIFNTIAFGGPAVFLLVLAFTSD--------------E------HR-L--LAVILLTIAIGLS 372 (466)
T ss_pred HHhhc-cCc---hHhHHHHHHhHHHHHHHHHHHeeeecCC--------------C------cc-h--HHHHHHHHHHHHc
Confidence 87766 222 1333344 4666666666666665421 0 11 1 223333443333
Q ss_pred -HhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHH
Q 013611 346 -TIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGG 424 (439)
Q Consensus 346 -~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~ 424 (439)
....+...-....-+++.+..+|+.+...++.+.++|.+++.+.. .. ...+| ...|++.+++.+++
T Consensus 373 g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~~--t~~eW----------~~VF~i~a~i~~~~ 439 (466)
T KOG2532|consen 373 GFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVT-DN--TREEW----------RIVFLIAAGILIVG 439 (466)
T ss_pred ccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeC-CC--CHHHH----------HHHHHHHHHHHHHh
Confidence 344443333333267889999999999999999999999998874 11 12234 77899999999999
Q ss_pred HHHHHHHh
Q 013611 425 LLAFLYFA 432 (439)
Q Consensus 425 ~~i~~~~~ 432 (439)
.++|.++.
T Consensus 440 ~i~f~~f~ 447 (466)
T KOG2532|consen 440 NIIFLFFG 447 (466)
T ss_pred chheeEee
Confidence 98888774
No 23
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.66 E-value=1.6e-14 Score=164.36 Aligned_cols=288 Identities=10% Similarity=0.012 Sum_probs=167.9
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI 109 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i 109 (439)
.+.+.+++.|+++|++.++..|...+++.+++++++ |++++++..++.++|.++||.++|++.+..+|++.|.+
T Consensus 106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~ 179 (1140)
T PRK06814 106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVAL 179 (1140)
T ss_pred hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 468899999999999999999999999999999987 99999999999999999999999999999999999955
Q ss_pred HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCC
Q 013611 110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGK 189 (439)
Q Consensus 110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (439)
.++..++++++.+...+ .+++.+...... ...+.....
T Consensus 180 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----------------------------~~~~~~~~~---------- 217 (1140)
T PRK06814 180 LMGIAVLGWLASLFIPK----TGNAAPDLKIDR----------------------------NIIRSTITL---------- 217 (1140)
T ss_pred HHHHHHHHHHHHhhCCC----CCCCCCCCeecc----------------------------chHHHHHHH----------
Confidence 55444444433332211 111110000000 000000000
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhh
Q 013611 190 LCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVP 269 (439)
Q Consensus 190 ~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~ 269 (439)
...+...+.++. ..+....++..+....+.++.... ..++ ......+++.....+..++...+.+++..
T Consensus 218 ---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~p~~~~---~~~g-~~~~~~g~~~~~~~~g~~ig~~~~g~l~~- 286 (1140)
T PRK06814 218 ---LKYAKADKRIWL---AILGISWFWLVGAVVLSQLPLLAK---ETLG-GDENVATLFLAVFSVGVAVGSFLASKLSE- 286 (1140)
T ss_pred ---HHHHhcCchHHH---HHHHHHHHHHHHHHHHHHhHHHHH---HHcC-CchHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 000011111111 111112222222222222222111 1111 11223456667777777776666666532
Q ss_pred hcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-CCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 013611 270 ITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLI-DKPNVTIPTSVWWLIPQYLLCGIADVFTIV 348 (439)
Q Consensus 270 ~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~l~gige~l~~~ 348 (439)
++ ...+.+.+|.++.++..+.+.+..... ....... .--......+.|++++..++.|++.++..+
T Consensus 287 ---~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 353 (1140)
T PRK06814 287 ---GR-------ITLLYVPIGALLMGLFGLDLAFASSSV---PAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIV 353 (1140)
T ss_pred ---Cc-------eeeeeehHHHHHHHHHHHHHHhccccc---ccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHH
Confidence 21 112233444444444433333210000 0000000 000000012456677888889999999998
Q ss_pred hhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611 349 GLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN 389 (439)
Q Consensus 349 ~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~ 389 (439)
...+.+++.+|++++|+++|+.++..++|..+|+.+++.+.
T Consensus 354 ~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 354 PLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred HHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999988875
No 24
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.65 E-value=1.5e-13 Score=137.59 Aligned_cols=283 Identities=11% Similarity=0.031 Sum_probs=171.0
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH
Q 013611 29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFG 108 (439)
Q Consensus 29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~ 108 (439)
..+.+.+++.|.+.+++.+...|...++..++ +++ |+++++...+..++|.++||.+++++.+++|||..|+
T Consensus 91 ~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~------~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~ 162 (382)
T PRK11128 91 AHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ------IGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILW 162 (382)
T ss_pred cccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh------ccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHH
Confidence 35678888899999999999999999888876 223 7889999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCC
Q 013611 109 IPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDG 188 (439)
Q Consensus 109 i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (439)
+.++..++..+..+. .++ ++|+++.++ ..+....+
T Consensus 163 ~~~~~~~~~~~~~~~-~~~---~~~~~~~~~------------------------~~~~~~~~----------------- 197 (382)
T PRK11128 163 ILTAGVASMLLGQLL-RPT---IMPQGESRQ------------------------QESAGWPA----------------- 197 (382)
T ss_pred HHHHHHHHHHHHHHc-cCC---CCCcccccc------------------------ccccccch-----------------
Confidence 877654444433222 111 111110000 00000000
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhh
Q 013611 189 KLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFV 268 (439)
Q Consensus 189 ~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~ 268 (439)
..+..+.|+++... +........+....+..+.... + .| ......+.+..++.+..++...+.+++
T Consensus 198 ----~~~i~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~--~--~g-~s~~~~g~~~~~~~~~~~~~~~~~g~l-- 263 (382)
T PRK11128 198 ----WKALLKEPTVWRFL---LCVSLLQGSHAAYYGFSAIYWQ--A--AG-YSASTIGYLWSLGVVAEVLIFAFSNRL-- 263 (382)
T ss_pred ----HHHHHcChhHHHHH---HHHHHHHHHhHhHHHHHHHHHH--H--CC-CCHhHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 01111222222221 1122222222222222222211 1 11 112223455555555555544444444
Q ss_pred hhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 013611 269 PITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIV 348 (439)
Q Consensus 269 ~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~ 348 (439)
.+|+ +.++.+.++.++.++++..+... .+.|+.++..++.|+++++..+
T Consensus 264 --~~r~-------~~~~~l~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~ 312 (382)
T PRK11128 264 --FRRW-------SARDLLLLSAICGVVRWGLMGST----------------------TALPWLIVIQILHCGTFTVCHL 312 (382)
T ss_pred --HHHC-------CHHHHHHHHHHHHHHHHHHHHhh----------------------hhHHHHHHHHHHHHHHHHHHHH
Confidence 3442 44455677777777776655543 2466677788999999999988
Q ss_pred hhHHHHHhhcChhhHHHHHHHHH-HHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 013611 349 GLQEFFYDQIPKELKSFGLSIYM-SVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLA 427 (439)
Q Consensus 349 ~~~~~~~~~aP~~~~g~~~gl~~-~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i 427 (439)
....++.+. |++.+++++++.+ +..++|..+|+.+.|.+.+.. + ...|+..+++.+++.++
T Consensus 313 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~---------------g--~~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 313 AAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL---------------G--AGVFWVMALVALPALFI 374 (382)
T ss_pred HHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------c--HHHHHHHHHHHHHHHHH
Confidence 888888876 6666799999886 667888899999999887532 1 23566666666665444
No 25
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.64 E-value=2e-13 Score=137.43 Aligned_cols=84 Identities=7% Similarity=0.131 Sum_probs=76.2
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH
Q 013611 29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFG 108 (439)
Q Consensus 29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~ 108 (439)
..+.+.+++.|++.|++.|...|...+++.|++|+++ |+++.++...+.++|.++||.+++++.+.+|||+.|+
T Consensus 105 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~ 178 (394)
T PRK10213 105 ANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFN 178 (394)
T ss_pred HChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 3578889999999999999999999999999999877 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 013611 109 IPCAFMVAAL 118 (439)
Q Consensus 109 i~~~~~~i~~ 118 (439)
+.++..++..
T Consensus 179 ~~~~l~~~~~ 188 (394)
T PRK10213 179 AAAVMGVLCI 188 (394)
T ss_pred HHHHHHHHHH
Confidence 9876555444
No 26
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.63 E-value=1.3e-13 Score=137.57 Aligned_cols=86 Identities=19% Similarity=0.122 Sum_probs=72.7
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI 109 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i 109 (439)
.+...+.+.|++.|+|+|.. +...+..++++|+++ |++++++...+.++|.++++.+++++.+.+|||+.|.+
T Consensus 77 ~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~ 149 (368)
T TIGR00903 77 FNYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIP 149 (368)
T ss_pred ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 36889999999999999974 555566699999876 99999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHH
Q 013611 110 PCAFMVAALVLFL 122 (439)
Q Consensus 110 ~~~~~~i~~~l~~ 122 (439)
.++..++..++++
T Consensus 150 ~~~l~~~~~~~~~ 162 (368)
T TIGR00903 150 IAAVAAAGIILVL 162 (368)
T ss_pred HHHHHHHHHHHHH
Confidence 7766555544433
No 27
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.63 E-value=3e-13 Score=136.46 Aligned_cols=271 Identities=11% Similarity=-0.021 Sum_probs=158.9
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI 109 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i 109 (439)
.+.+.+++.|++.|++.+...|...+.+.|.+|+++ |.+++++.+...++|..+||.+++++.+..+||+.|++
T Consensus 99 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~ 172 (406)
T PRK15402 99 QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVL 172 (406)
T ss_pred ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHH
Confidence 356778899999999999999999999999998876 88999999999999999999999999998999999998
Q ss_pred HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCC
Q 013611 110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGK 189 (439)
Q Consensus 110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (439)
.++..++..+..+...++.+. +++++.+..+ ..+..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----------------------------~~~~~------------- 208 (406)
T PRK15402 173 FAALAALSFFGLWRAMPETAG--RVGEKLSLKE-----------------------------LGRDY------------- 208 (406)
T ss_pred HHHHHHHHHHHHHHhCCCCCc--cccccccHHH-----------------------------HHHHH-------------
Confidence 887766655543332221110 0000000000 00000
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhh
Q 013611 190 LCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVP 269 (439)
Q Consensus 190 ~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~ 269 (439)
..+...+++.. ..+........+....+..+....+ +.... ....+.......+..++..++.+++
T Consensus 209 ----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~p~~~~~-~~g~~---~~~~g~~~~~~~~~~~~g~~~~g~l--- 274 (406)
T PRK15402 209 ----KLVLKNRRFVA---GALALGLVSLPLLAWIALSPVILIS-GEQLS---SYEYGLLQVPVFGALIAGNLTLARL--- 274 (406)
T ss_pred ----HHHHcCcHHHH---HHHHHHHHHHHHHHHHHHhHHHHHH-HhCCC---HHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 00001111111 1111111111111111111111100 01110 1112222222222333333344443
Q ss_pred hcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhh
Q 013611 270 ITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVG 349 (439)
Q Consensus 270 ~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~ 349 (439)
.+|. +.++.+.+|.++.+++..+....... ...+.+|.++..++.++|++...+.
T Consensus 275 -~~r~-------~~~~~~~~~~~~~~~g~~~~~~~~~~-----------------~~~~~~~~~~~~~~~g~g~~~~~~~ 329 (406)
T PRK15402 275 -TSRR-------PLRSLIRMGLWPMVAGLLLAALATVI-----------------SSHAYLWLTAGLSLYAFGIGLANAG 329 (406)
T ss_pred -HHhc-------CHHHHHHHHHHHHHHHHHHHHHHHHc-----------------ccccHHHHHHHHHHHHHHHHHHhhh
Confidence 2332 34455677777777777666654210 0124667778889999999998777
Q ss_pred hHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611 350 LQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE 390 (439)
Q Consensus 350 ~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~ 390 (439)
.+..+.. .+++++|++.+++++.+.+|+.+|+.+.+.+.+
T Consensus 330 ~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~ 369 (406)
T PRK15402 330 LYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL 369 (406)
T ss_pred HHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6665544 455999999999999999999999999998764
No 28
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.62 E-value=2.4e-13 Score=132.86 Aligned_cols=264 Identities=19% Similarity=0.262 Sum_probs=186.3
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI 109 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i 109 (439)
.+.+.+.+.+++.|++.+...|...++..|.+|+++ |++++++.+...++|..+||.+++++.+..+|++.|.+
T Consensus 85 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 158 (352)
T cd06174 85 SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLI 158 (352)
T ss_pred ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 457788999999999999999999999999999977 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCC
Q 013611 110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGK 189 (439)
Q Consensus 110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (439)
.++..++..+...+.. +
T Consensus 159 ~~~~~~~~~~~~~~~~---------~------------------------------------------------------ 175 (352)
T cd06174 159 LAILGLLLALLLLFLL---------R------------------------------------------------------ 175 (352)
T ss_pred HHHHHHHHHHHHHHHH---------H------------------------------------------------------
Confidence 8877666655433211 0
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhh
Q 013611 190 LCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVP 269 (439)
Q Consensus 190 ~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~ 269 (439)
+... ..+........+.......+....+. .+ ......+.+..+..+..++..++.+++.++
T Consensus 176 -----------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 237 (352)
T cd06174 176 -----------LLLL---LALAFFLLSFGYYGLLTYLPLYLQEV-LG---LSAAEAGLLLSLFGLGGILGALLGGLLSDR 237 (352)
T ss_pred -----------HHHH---HHHHHHHHHhHHHHHHHHHHHHHHHh-cC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 11111111111111111111111110 01 112334556667777777777776665543
Q ss_pred hcccccCCCCCCCchh-HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 013611 270 ITRYFTQNPSGITMLQ-RIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIV 348 (439)
Q Consensus 270 ~~~k~~~~~~~~~~~~-~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~ 348 (439)
..+ ++ .+.++..+..+++......+ +.++..+..++.++++....+
T Consensus 238 ~~~-----------~~~~~~~~~~~~~i~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~ 284 (352)
T cd06174 238 LGR-----------RRLLLLIGLLLAALGLLLLALAP----------------------SLALLLVALLLLGFGLGFAFP 284 (352)
T ss_pred HHh-----------hhHHHHHHHHHHHHHHHHHHHhc----------------------cHHHHHHHHHHHHHHHhccch
Confidence 322 23 56677777777776666542 356677888999999999999
Q ss_pred hhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHH
Q 013611 349 GLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAF 428 (439)
Q Consensus 349 ~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~ 428 (439)
....++.+..|++.|++++|+.+...++|+.+++.+.+.+.+. .++...|...+++.+++.+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~----------------~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 285 ALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT----------------GGYGGVFLILAALALLAALLL 348 (352)
T ss_pred hHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------cCcchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999988632 223456777777777776654
Q ss_pred H
Q 013611 429 L 429 (439)
Q Consensus 429 ~ 429 (439)
.
T Consensus 349 ~ 349 (352)
T cd06174 349 L 349 (352)
T ss_pred e
Confidence 3
No 29
>PRK10054 putative transporter; Provisional
Probab=99.62 E-value=1.2e-13 Score=139.12 Aligned_cols=265 Identities=12% Similarity=0.075 Sum_probs=157.4
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI 109 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i 109 (439)
.+.+.+++.+.+.+.+.+...|+..+...|.+++++ |++++++.+...|+|.++||.+++++.+ .+|+..|.+
T Consensus 94 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~ 166 (395)
T PRK10054 94 NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWL 166 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHH
Confidence 345566777888888888889999999999998776 9999999999999999999999999875 799999998
Q ss_pred HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCC
Q 013611 110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGK 189 (439)
Q Consensus 110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (439)
.++..++.+++..+..++. +|++++++ .. .+ +
T Consensus 167 ~~~~~~i~~i~~~~~~~~~---~~~~~~~~-~~----------------------------~~-~--------------- 198 (395)
T PRK10054 167 AAICSAFPLVFIQIWVQRS---EKAIATET-GS----------------------------VW-S--------------- 198 (395)
T ss_pred HHHHHHHHHHHHHHHHhcc---ccccccch-hh----------------------------hh-h---------------
Confidence 8877776654332222211 11110000 00 00 0
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhh
Q 013611 190 LCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVP 269 (439)
Q Consensus 190 ~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~ 269 (439)
..+..+.|+++. +..........+....+.........+ +.+ ......+.+..++....+...+..++
T Consensus 199 ---~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~g~~~~~~~~~~~~~~~~~g~---- 266 (395)
T PRK10054 199 ---PSVLLQDKALLW---FTCSGFLASFVSGAFASCISQYVMVVA-DSD-FAEKVVAVVLPVNAAMVVSLQYSVGR---- 266 (395)
T ss_pred ---hhhhccCceehH---HHHHHHHHHHHHHHhhhhHHHHHHHhc-ccc-hHHHHHHHHHHhhhhheeeehhHHHH----
Confidence 000011111111 111111111111111111111111111 111 00112233444444444443333333
Q ss_pred hcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhh
Q 013611 270 ITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVG 349 (439)
Q Consensus 270 ~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~ 349 (439)
+.+|+ ++++.+..|+.+.++++....... .+.+...+..++.++|+....|.
T Consensus 267 ~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~g~~~~~p~ 318 (395)
T PRK10054 267 RLNAA-------NIRPLMTAGTLCFVIGLVGFIFSG---------------------NSLLLWGMSAAVFTVGEIIYAPG 318 (395)
T ss_pred HHccC-------CchhHHHHHHHHHHHHHHHHHHcc---------------------hHHHHHHHHHHHHHHHHHHHHhh
Confidence 33332 344566777777777765554321 13444456678999999998888
Q ss_pred hHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611 350 LQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE 390 (439)
Q Consensus 350 ~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~ 390 (439)
..+.+.+.+|++++|++.|..+ ...+|..+||.+.|.+.+
T Consensus 319 ~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~ 358 (395)
T PRK10054 319 EYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILT 358 (395)
T ss_pred HHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHH
Confidence 8889999999999999998766 455899999999998875
No 30
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.61 E-value=2.5e-13 Score=134.92 Aligned_cols=287 Identities=14% Similarity=0.106 Sum_probs=162.9
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhh--HHHHHHHHHHHHHHHHHHHHHhhhcccchhh
Q 013611 29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSF--FNWWYFGISFGANSTILVVIYIQDNLNWALG 106 (439)
Q Consensus 29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~--f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~ 106 (439)
..+.+.+++.+.+++.+.+...|...++..++.|+++ |.++ .++.+.+.++|..+||.+++++.+.++||+.
T Consensus 84 ~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~ 157 (375)
T TIGR00899 84 NRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVM 157 (375)
T ss_pred cchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHH
Confidence 3456777888888888888889999998888877654 5443 6888889999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCC
Q 013611 107 FGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLE 186 (439)
Q Consensus 107 F~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (439)
|++.++..++..++.++..++.+.+++++ + +..++
T Consensus 158 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----------------------------~~~~~-------------- 192 (375)
T TIGR00899 158 FLTAALAFVLCGVLVWLFLPSYPRGAPGA--L-----------------------------TRLEV-------------- 192 (375)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccCcccc--c-----------------------------Ccchh--------------
Confidence 99988766665554433222211100000 0 00000
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhh
Q 013611 187 DGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCI 266 (439)
Q Consensus 187 ~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~ 266 (439)
.+....+.. +. ++......+..+......++....+ +.+.. ....+.+..+.....+...++.+++
T Consensus 193 -------~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~---~~~~g~~~~~~~~~~~~~~~~~g~l 258 (375)
T TIGR00899 193 -------RGLLASRDT-RL--LFVACTLMWGCNILYIINMPLLIIH-ELGLP---DKLAGLMMGTAAGLEIPFMLLAGYL 258 (375)
T ss_pred -------hhhhcCcch-HH--HHHHHHHHHHHHHHHHhhhHHHHHH-HcCCC---HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 000001111 11 1111111121111111111111100 11110 1112333334444444444444554
Q ss_pred hhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 013611 267 FVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFT 346 (439)
Q Consensus 267 ~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~ 346 (439)
. +|. +.++.+.++.++..+.+...... .+.+..+...++.+++.+..
T Consensus 259 ~----~r~-------g~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~g~~ 305 (375)
T TIGR00899 259 I----KRF-------GKRRLMLLAALAGVAFYTGLAAD----------------------NSLWALLMLQLLNAIFIGIL 305 (375)
T ss_pred H----HHh-------cchhHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHH
Confidence 4 332 22233444544444333332221 13444555667788888887
Q ss_pred hhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHH
Q 013611 347 IVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLL 426 (439)
Q Consensus 347 ~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~ 426 (439)
.+....++.+..|++ +++++|+++...++|..+++.+.+.+.+. .++...|++.++..+++.+
T Consensus 306 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~----------------~g~~~~~~~~~~~~~~~~~ 368 (375)
T TIGR00899 306 AGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAER----------------WSYHAVYWFAIVMLIVALF 368 (375)
T ss_pred HHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------ccchhHHHHHHHHHHHHHH
Confidence 777777888888875 56999999999999999999999988642 1245567777777777766
Q ss_pred HHHH
Q 013611 427 AFLY 430 (439)
Q Consensus 427 i~~~ 430 (439)
+...
T Consensus 369 ~~~~ 372 (375)
T TIGR00899 369 CLLL 372 (375)
T ss_pred HHhe
Confidence 6543
No 31
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.61 E-value=3.3e-13 Score=135.15 Aligned_cols=85 Identities=11% Similarity=0.158 Sum_probs=75.2
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH
Q 013611 29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFG 108 (439)
Q Consensus 29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~ 108 (439)
..+.+.+++.|++.|++.|...|...+++.+++++++ |+++++.+..+.++|..+||.+++++.+..+||+.|.
T Consensus 88 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~ 161 (382)
T PRK10091 88 SSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFL 161 (382)
T ss_pred hCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHH
Confidence 3467889999999999999999999999999998866 8899999999999999999999999999899999999
Q ss_pred HHHHHHHHHHH
Q 013611 109 IPCAFMVAALV 119 (439)
Q Consensus 109 i~~~~~~i~~~ 119 (439)
+.++..++..+
T Consensus 162 ~~~~~~~~~~~ 172 (382)
T PRK10091 162 LIAVFNIAVLA 172 (382)
T ss_pred HHHHHHHHHHH
Confidence 98876555444
No 32
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.61 E-value=1.7e-14 Score=141.61 Aligned_cols=267 Identities=18% Similarity=0.269 Sum_probs=162.7
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHH
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIP 110 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~ 110 (439)
+.+.+++.|++.|++.+...|...+++.|++|+++ |++++++.+.+.++|.++||.+++++.+.++||+.|++.
T Consensus 84 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~ 157 (352)
T PF07690_consen 84 NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLIS 157 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHH
T ss_pred hHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhhhhhcccchhhhhhhccccccccccc
Confidence 45589999999999999999999999999999987 999999999999999999999999999889999999999
Q ss_pred HHHHHHHHHHHHhcCcceeeecCCCCC-CcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCC
Q 013611 111 CAFMVAALVLFLLGTKTYRFSIKSKQR-NPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGK 189 (439)
Q Consensus 111 ~~~~~i~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (439)
++..++..++.....+ .+++++++ ++.. .++.+..++.+
T Consensus 158 ~~~~~~~~il~~~~~~---~~~~~~~~~~~~~----------------------~~~~~~~~~~~--------------- 197 (352)
T PF07690_consen 158 AILSLIAAILFILFLP---EPPPPRERESPKE----------------------SESKKPKPLKP--------------- 197 (352)
T ss_dssp HHHHHHHHHHHHCCC------STTTT--SSTT----------------------TT--HHHCCCH---------------
T ss_pred cchhhhhhhhHhhhhh---hcccccccccccc----------------------ccccccccccc---------------
Confidence 9887777664322221 11111100 0000 00000000000
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCc-cccchhhhhhHHHHHHHHHHhhhhhhh
Q 013611 190 LCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSI-KIPAASLQLFIGIGIITFIPIYDCIFV 268 (439)
Q Consensus 190 ~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~-~~~~~~~~~in~~~iii~~pl~~~~~~ 268 (439)
.. +...+.+.++ ............+.......+.. +....+ .. ....+.+..+..+..++..++.+++.+
T Consensus 198 ~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 268 (352)
T PF07690_consen 198 GF--KSLFKNPVLW---ILLIAFFLFFFVFSGFSFFLPLY---LQEVLG-FSGPSQAGLLFSIFGIVGIIGSLLAGRLSD 268 (352)
T ss_dssp -C--THHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHH---CCHHHH-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc--ccccccchhh---hhhhhhhHHHHHHHHhhcccchh---hhhccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 1122222111 11112222222222222222221 111111 00 122334455555665555666666553
Q ss_pred hhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 013611 269 PITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIV 348 (439)
Q Consensus 269 ~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~ 348 (439)
++ +..++..+......++...+..... ..+.++.....++.|++.+...+
T Consensus 269 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~g~~~~~~~~ 318 (352)
T PF07690_consen 269 RF-----------GRRRRLLIAILLLILGALGLLLLPF-------------------SSSPVWLIIALFLIGFGFGIVFP 318 (352)
T ss_dssp HT-----------TCHHHHHHHHHHHHHHHHHHCCSHH-------------------HCHHHHHHHHHHHHHHHHHHHCH
T ss_pred Hc-----------CcHHHHHHHHHHHHHHHHHHHHHHH-------------------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 32 2233444444444444433332221 12455666678889999999999
Q ss_pred hhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhh
Q 013611 349 GLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSS 382 (439)
Q Consensus 349 ~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~ 382 (439)
.....+.+.+|++.+|+++|+.+...++|+.+||
T Consensus 319 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 319 ILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999886
No 33
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.61 E-value=4.4e-13 Score=131.86 Aligned_cols=294 Identities=14% Similarity=0.120 Sum_probs=186.9
Q ss_pred CCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhh
Q 013611 27 PHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALG 106 (439)
Q Consensus 27 ~~~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~ 106 (439)
+...+++.+.++|++.|+..|.+.+...+..++..|+++ |+++.+....+..++-.+|..+|.++.+.+|||..
T Consensus 96 alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~ 169 (394)
T COG2814 96 ALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRAT 169 (394)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHH
Confidence 345678899999999999999999999999999999988 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCC
Q 013611 107 FGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLE 186 (439)
Q Consensus 107 F~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (439)
|++.++..++.....+...+ +.+.++.+..++.+
T Consensus 170 F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~~~~~~-------------------------------------------- 203 (394)
T COG2814 170 FLAIAVLALLALLLLWKLLP--PSEISGSLPGPLRT-------------------------------------------- 203 (394)
T ss_pred HHHHHHHHHHHHHHHHHhCC--CccCCCCCCcchhH--------------------------------------------
Confidence 99888776666655444333 11111110000000
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCcc-ccchhhhhhHHHHHHHHHHhhhh
Q 013611 187 DGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIK-IPAASLQLFIGIGIITFIPIYDC 265 (439)
Q Consensus 187 ~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~-~~~~~~~~in~~~iii~~pl~~~ 265 (439)
+.++..+. +.....+.+..+..-.+..+++.....++. . |+. -..++.-...++..++...+.++
T Consensus 204 ------~~~~l~~p---~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v---~--g~s~~~vs~~Ll~~Gv~~~~Gn~~gGr 269 (394)
T COG2814 204 ------LLRLLRRP---GVLLGLLATFLFMTGHFALYTYIRPFLESV---A--GFSVSAVSLVLLAFGIAGFIGNLLGGR 269 (394)
T ss_pred ------HHHHhcCc---hHHHHHHHHHHHHcchhhhHHhHHHHHHHc---c--CCCHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 00011111 111222222222222222233332222211 1 221 22355666677777776666666
Q ss_pred hhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHH
Q 013611 266 IFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVF 345 (439)
Q Consensus 266 ~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l 345 (439)
+.+ | ++++-+...+.+.++.+..+.+.. .+.+..+...++.+++..
T Consensus 270 l~d----r--------~~~~~l~~~~~l~a~~~l~l~~~~---------------------~~~~~~~~~~~~wg~a~~- 315 (394)
T COG2814 270 LAD----R--------GPRRALIAALLLLALALLALTFTG---------------------ASPALALALLFLWGFAFS- 315 (394)
T ss_pred hcc----c--------cchhHHHHHHHHHHHHHHHHHHhc---------------------chHHHHHHHHHHHHHHhh-
Confidence 543 2 233455566677777776666542 233434444444333333
Q ss_pred HhhhhHHHHHhhcC--hhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHH
Q 013611 346 TIVGLQEFFYDQIP--KELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAG 423 (439)
Q Consensus 346 ~~~~~~~~~~~~aP--~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l 423 (439)
+.......+.++ ++.+..+++++....|+|..+|..++|.+.+. .++....++-+.+.++
T Consensus 316 --~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~----------------~g~~~~~~~~a~l~~~ 377 (394)
T COG2814 316 --PALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDA----------------LGYAATGWVGAALLLL 377 (394)
T ss_pred --hhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------hchHHHHHHHHHHHHH
Confidence 333344455555 67899999999999999999999999988742 3456677788888888
Q ss_pred HHHHHHHHhccCccC
Q 013611 424 GLLAFLYFAKSYNRE 438 (439)
Q Consensus 424 ~~~i~~~~~~~~~~~ 438 (439)
+.++.+...++.+++
T Consensus 378 a~~~~~~~~~~~~~~ 392 (394)
T COG2814 378 ALLLALLSARKDRRT 392 (394)
T ss_pred HHHHHHHHHhccccc
Confidence 887777777766654
No 34
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.60 E-value=3.3e-13 Score=135.77 Aligned_cols=287 Identities=11% Similarity=0.042 Sum_probs=166.3
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhhh
Q 013611 29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNL-NWALGF 107 (439)
Q Consensus 29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~-g~~~~F 107 (439)
..+...+.++|++.|+|.|...+...+.+.+++| ++ |+++++.+..+.++|..+|+.+++++.++. +||..|
T Consensus 94 a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~ 166 (393)
T PRK09705 94 YPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTL 166 (393)
T ss_pred CcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3456778999999999999999999999999987 55 899999999999999999999999998875 899988
Q ss_pred HHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCC
Q 013611 108 GIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLED 187 (439)
Q Consensus 108 ~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (439)
.+.++..++.+..++...++ +|+++.++.. . .
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--------------------------~---~--------------- 198 (393)
T PRK09705 167 AWWALPAVVALFAWWWQSAR----EVASSHKTTT--------------------------T---P--------------- 198 (393)
T ss_pred HHHHHHHHHHHHHHHHHhcC----CCccccCCCc--------------------------C---C---------------
Confidence 76554444443333322111 1111000000 0 0
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhh
Q 013611 188 GKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIF 267 (439)
Q Consensus 188 ~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~ 267 (439)
.+. ..++ +.+... +........+....+..+....+ .... ....+.+..+..+..++..++.+++
T Consensus 199 ~~~-----l~~~-~~~~l~---~~~~~~~~~~~~~~~~lp~~l~~--~g~s---~~~ag~~~~~~~i~~i~g~~~~g~l- 263 (393)
T PRK09705 199 VRV-----VFTP-RAWTLG---VYFGLINGGYASLIAWLPAFYIE--IGAS---AQYSGSLLALMTLGQAAGALLMPAM- 263 (393)
T ss_pred ccc-----ccCH-hHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--cCCC---hhhhhHHHHHHHHHHHHHHHHHHHH-
Confidence 000 0011 111111 11111111222222222222111 1110 1223445555555555555554443
Q ss_pred hhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHh
Q 013611 268 VPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTI 347 (439)
Q Consensus 268 ~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~ 347 (439)
.+|. +.++.+.+++.+.++++..+.... .+..+. ..++.+++.+...
T Consensus 264 ---~~r~-------~~~~~~~~~~~l~~~~~~~~~~~~---------------------~~~~~~--~~~l~g~g~g~~~ 310 (393)
T PRK09705 264 ---ARHQ-------DRRKLLMLALVLQLVGFCGFIWLP---------------------LQLPVL--WAMVCGLGLGGAF 310 (393)
T ss_pred ---Hhhc-------cchHHHHHHHHHHHHHHHHHHHcc---------------------chHHHH--HHHHHHHhccchH
Confidence 3332 233455666666666655444321 111111 1234567776666
Q ss_pred hhhHHHHHhhc-ChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHH
Q 013611 348 VGLQEFFYDQI-PKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLL 426 (439)
Q Consensus 348 ~~~~~~~~~~a-P~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~ 426 (439)
+.....+.+.. |++.+|+.+|+.+....+++.+++.+.+.+.+.. +++...|...++.+++..+
T Consensus 311 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~---------------g~~~~~~~~~~~~~~~~~~ 375 (393)
T PRK09705 311 PLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS---------------GNYLMDWAFHALCVVGLMI 375 (393)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------CCchHHHHHHHHHHHHHHH
Confidence 66655666666 4789999999999999999999999999887532 3345566666666666666
Q ss_pred HHHHHhc
Q 013611 427 AFLYFAK 433 (439)
Q Consensus 427 i~~~~~~ 433 (439)
+.+...+
T Consensus 376 ~~~~~~~ 382 (393)
T PRK09705 376 ITLRFAP 382 (393)
T ss_pred HHHHhcc
Confidence 6555544
No 35
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.60 E-value=6.1e-13 Score=135.65 Aligned_cols=84 Identities=18% Similarity=0.220 Sum_probs=74.6
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH
Q 013611 29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFG 108 (439)
Q Consensus 29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~ 108 (439)
..+.+.+++.|++.|++.|...|...+.+.+++|+++ |++++++++.+.++|..+++.+++++.+.+|||+.|.
T Consensus 108 ~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~ 181 (434)
T PRK11663 108 SSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMM 181 (434)
T ss_pred HhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 3467788888999999999999999999999999877 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 013611 109 IPCAFMVAAL 118 (439)
Q Consensus 109 i~~~~~~i~~ 118 (439)
+.++..++..
T Consensus 182 ~~~i~~~~~~ 191 (434)
T PRK11663 182 IAGIIAIVVG 191 (434)
T ss_pred HHHHHHHHHH
Confidence 8876555443
No 36
>PRK10504 putative transporter; Provisional
Probab=99.60 E-value=4.7e-13 Score=137.72 Aligned_cols=308 Identities=12% Similarity=0.080 Sum_probs=169.3
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI 109 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i 109 (439)
.+.+.++++|+++|+|.|+..|...+.+.|.+|+++ |.+++++...+.++|..+||.++|++.+..+||+.|.+
T Consensus 96 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~ 169 (471)
T PRK10504 96 GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLI 169 (471)
T ss_pred CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHH
Confidence 356778999999999999999999999999998765 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCC-------C
Q 013611 110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATP-------D 182 (439)
Q Consensus 110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 182 (439)
+.+...+..+......++.+.++ .+. +..+.............. .+..+...|......... .
T Consensus 170 ~~~~~~l~~~~~~~~~~~~~~~~-----~r~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (471)
T PRK10504 170 NIPVGIIGAIATLMLMPNYTMQT-----RRF-DLSGFLLLAVGMATLTLA----LDGSKGLGLSPLAIAGLVAVGVVALL 239 (471)
T ss_pred HHHHHHHHHHHHHHhCCCccccC-----CCC-ChHHHHHHHHHHHHHHHH----HhcCCcCCcchHHHHHHHHHHHHHHH
Confidence 88766665554443333211111 111 111111100000000000 000000011000000000 0
Q ss_pred -----CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHH
Q 013611 183 -----VSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGII 257 (439)
Q Consensus 183 -----~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~ii 257 (439)
+........+. +....|.+. .........+..+.......+...++ ..| ......+.......+..+
T Consensus 240 ~~~~~~~~~~~~~~~~-~l~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~---~~g-~~~~~~g~~~~~~~~~~~ 311 (471)
T PRK10504 240 LYLLHARNNNRALFSL-KLFRTRTFS---LGLAGSFAGRIGSGMLPFMTPVFLQI---GLG-FSPFHAGLMMIPMVLGSM 311 (471)
T ss_pred HHHHHHhcCCCCccCH-HHhcccchH---HHHHHHHHHHHHHHHHHHHHHHHHHH---HcC-CCHHHHHHHHHHHHHHHH
Confidence 00000000011 111112221 12222222222222222111111111 111 111222333333333333
Q ss_pred HHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHH
Q 013611 258 TFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYL 337 (439)
Q Consensus 258 i~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 337 (439)
+..++.+++ .+|. ++++.+..|.++.+++..+...... ..+.++.....+
T Consensus 312 ~~~~~~~~l----~~r~-------g~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~ 361 (471)
T PRK10504 312 GMKRIVVQV----VNRF-------GYRRVLVATTLGLALVSLLFMLVAL-------------------LGWYYLLPFVLF 361 (471)
T ss_pred HHHHHHHHH----HHHc-------CchHHHHHHHHHHHHHHHHHHhccc-------------------cccHHHHHHHHH
Confidence 333444443 3442 3444556677766666555443310 112333445567
Q ss_pred HHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhcc
Q 013611 338 LCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEA 391 (439)
Q Consensus 338 l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~ 391 (439)
+.|++.++..+..+..+.+.+|++.+|+++|++++.+.+|+.+|+.+.+.+.+.
T Consensus 362 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~ 415 (471)
T PRK10504 362 LQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGL 415 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899988888888999999999999999999999999999999999977544
No 37
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.60 E-value=1.8e-13 Score=140.44 Aligned_cols=307 Identities=13% Similarity=0.100 Sum_probs=171.7
Q ss_pred hHHHHHH-HHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611 31 QIIVFIF-SLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI 109 (439)
Q Consensus 31 ~~~~~~~-~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i 109 (439)
+.+.+++ .|++.|+|.|...+...+.+.++++ ++ |+++.++.+.+.++|..++|.+++++.+.+|||+.|++
T Consensus 106 ~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~ 178 (455)
T TIGR00892 106 NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLI 178 (455)
T ss_pred hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 4555544 4688899999876667788889885 45 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCC
Q 013611 110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGK 189 (439)
Q Consensus 110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (439)
.++..++..+..++.++....++...+++. ... +.. ....+.... ...+ ...+
T Consensus 179 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--------------~~~--~~~--~~~~~~~~~-~~~~--------~~~~ 231 (455)
T TIGR00892 179 LGGLLLHCCVCGALMRPVGPSQRVSKSKSK--------------EGL--PPD--GSTKKLSKK-STAE--------KINR 231 (455)
T ss_pred HHHHHHHHHHHHHHhCCCCccccccccccc--------------ccC--CCC--Ccccccccc-chhh--------hhhh
Confidence 987776655544443332111000000000 000 000 000000000 0000 0000
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhh
Q 013611 190 LCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVP 269 (439)
Q Consensus 190 ~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~ 269 (439)
..+. +....+.+ .............+....+.+..... +.... ....+.+..+..+..++..|+.+.+.++
T Consensus 232 ~~~~-~~~~~~~~---~~~~~~~~l~~~~~~~~~~~l~~~~~--~~g~s---~~~~g~~~~~~~~~~~~~~~~~g~l~d~ 302 (455)
T TIGR00892 232 FLDF-SLFTHRGF---LVYLSGNVIMFLGFFAPIIFLVPYAK--DKGVD---EYEAAFLLSIIGFVDIFARPSCGLIAGL 302 (455)
T ss_pred hcch-HHhcCchH---HHHHHHHHHHHHHccchHHHHHHHHH--HcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0000 00111111 11111122222222222222222221 11111 2234556666677777777777765542
Q ss_pred hcccccCCCCCCCchhHH--hHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHh
Q 013611 270 ITRYFTQNPSGITMLQRI--GAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTI 347 (439)
Q Consensus 270 ~~~k~~~~~~~~~~~~~i--~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~ 347 (439)
+. .+.+++. ..++++.++++++.... .+.+++++..++.|++.+...
T Consensus 303 ----~~-----~~~~~~~~~~~~~~~~~l~~ll~~~~----------------------~~~~~~~i~~~~~G~~~g~~~ 351 (455)
T TIGR00892 303 ----KW-----IRPHVQYLFSFALLFNGLTHLLCALA----------------------GDYTGLVIYCIFFGLSFGSVG 351 (455)
T ss_pred ----cc-----cCHHHHHHHHHHHHHHHHHHHHHHHh----------------------chHHHHHHHHHHHHHHhchHH
Confidence 11 1122222 33333333433333221 245666777888999998888
Q ss_pred hhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHH
Q 013611 348 VGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLL 426 (439)
Q Consensus 348 ~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~ 426 (439)
+...+.+.+.+|++.+|+.+|+++...++|+.+|+.+.|.+.+.. +++...|...+++.+++++
T Consensus 352 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~---------------g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 352 ALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDAT---------------KNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhc---------------CCcchHHHHhhHHHHHHHH
Confidence 888889999999999999999999999999999999999876422 2234556666665555544
No 38
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.60 E-value=3.4e-13 Score=139.61 Aligned_cols=292 Identities=15% Similarity=0.123 Sum_probs=184.7
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH
Q 013611 29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFG 108 (439)
Q Consensus 29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~ 108 (439)
..+.+.+++.-++.|++.+...|..++++.+..|+++ ..++.++.....|+.-++||.++|.+....|..+.|.
T Consensus 100 ~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~ 173 (524)
T PF05977_consen 100 LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALNSISFNIARIIGPALGGILVAFFGAAAAFL 173 (524)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 3467788888899999999999999999999999987 8999999999999999999999999999899999999
Q ss_pred HHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCC
Q 013611 109 IPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDG 188 (439)
Q Consensus 109 i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (439)
++++..++.+......++... ++. .+..++.+-+..+++
T Consensus 174 inalsfl~~i~~l~~~~~~~~---~~~--~~~e~~~~~l~~G~r------------------------------------ 212 (524)
T PF05977_consen 174 INALSFLISILALLRWKPPPP---PSS--LPRERFFSALREGLR------------------------------------ 212 (524)
T ss_pred HHHHHHHHHHHHHHHcccccc---ccc--cchhhhhhhHHHHHH------------------------------------
Confidence 999888776655443332211 111 111111111111100
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhh
Q 013611 189 KLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFV 268 (439)
Q Consensus 189 ~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~ 268 (439)
-+.+.+.+...+.. ...+.....-....++...+ ..++ +-....|.+....++..++. -+..
T Consensus 213 ------yv~~~~~l~~~l~~---~~~~~l~~~a~~aLlPl~a~---~~l~-~~a~~yGll~a~~gvGai~G-----al~~ 274 (524)
T PF05977_consen 213 ------YVRSSPPLRSVLLR---SFLFNLFASAVWALLPLFAR---DVLG-GGASGYGLLLAAFGVGAILG-----ALLL 274 (524)
T ss_pred ------HHhcchHHHHHHHH---HHHHHHhhhHHHHhhhHHHH---HHhC-CcHHHHHHHHHHHHHHHHHH-----HHHH
Confidence 01111111111111 11111111111111222221 1111 11222344444455554443 3333
Q ss_pred hhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 013611 269 PITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIV 348 (439)
Q Consensus 269 ~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~ 348 (439)
+..+++ .+..+.+..+.++.+++++.+++. .+.|..++..++.|++.....+
T Consensus 275 ~~l~~~------~~~~~lv~~~~~~~a~~~~~lal~----------------------~~~~~~~~~l~l~G~~~~~~~~ 326 (524)
T PF05977_consen 275 PRLRRR------LSSRRLVLLASLLFALALLLLALS----------------------PSFWLALIALFLAGAAWIIANS 326 (524)
T ss_pred HHhhcc------cCcchhhHHHHHHHHHHHHHHhcc----------------------hHHHHHHHHHHHHHHHHHHHHH
Confidence 333332 244456677777777777666654 2566677788889999999999
Q ss_pred hhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHH
Q 013611 349 GLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAF 428 (439)
Q Consensus 349 ~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~ 428 (439)
..+..+++.+|++++|++++++......+..+|..+.|.+.+.. +....+...++..+++.++.
T Consensus 327 ~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~----------------g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 327 SLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF----------------GVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887532 23445555555555555554
Q ss_pred H
Q 013611 429 L 429 (439)
Q Consensus 429 ~ 429 (439)
.
T Consensus 391 ~ 391 (524)
T PF05977_consen 391 L 391 (524)
T ss_pred H
Confidence 4
No 39
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.59 E-value=4.3e-13 Score=134.96 Aligned_cols=262 Identities=15% Similarity=0.106 Sum_probs=152.0
Q ss_pred HHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHH
Q 013611 36 IFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMV 115 (439)
Q Consensus 36 ~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~~~~~~ 115 (439)
.+.|+++|++.|+..|...+++.|.+|+++ |.++.++.....++|.++||.++|++.+. .|+..|.+.+...+
T Consensus 92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~ 164 (393)
T PRK11195 92 LLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYL 164 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 678999999999999999999999999877 99999999999999999999999999885 48877777765544
Q ss_pred HHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCCCCchhh
Q 013611 116 AALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLED 195 (439)
Q Consensus 116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (439)
++....... ++.+.++++.+.++. ...+ ++.+.. ..
T Consensus 165 ~~~~~~~~l-~~~~~~~~~~~~~~~-~~~~-------------------------~~~~~~-----------------~~ 200 (393)
T PRK11195 165 LAALFNLFI-PRLGARRPGQSWNPI-ALLR-------------------------DFFHAC-----------------RV 200 (393)
T ss_pred HHHHHHhcC-CCCcccccccCCCHH-HHHH-------------------------HHHHHH-----------------HH
Confidence 443333221 211111110000000 0000 000000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhhhccccc
Q 013611 196 VEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFT 275 (439)
Q Consensus 196 v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~ 275 (439)
+...+.. +. .......++.........+....+ ..++ ......+.+....++..++..++.+++. +|+
T Consensus 201 l~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~lg-~s~~~~G~~~~~~~~g~i~g~~~~~~l~----~~~- 268 (393)
T PRK11195 201 LWRDKLG-RF--SLAGTTLFWGAGATLRFLVLAWAP---VALG-ITLNQPAYLQAVVAIGIAVGAGAAARLV----TLE- 268 (393)
T ss_pred HHhCchh-HH--HHHHHHHHHHHHHHHHHHHHHHHH---HHcC-CChhHHHHHHHHHHHHHHHHHHHHHHHh----cCC-
Confidence 1111111 11 111111222222222211111110 0111 1122345556666666666555554432 221
Q ss_pred CCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 013611 276 QNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFY 355 (439)
Q Consensus 276 ~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~ 355 (439)
+..+.+..|. +.++........ .+.++.++..++.|++.++..++.++.++
T Consensus 269 ------~~~~~~~~g~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q 319 (393)
T PRK11195 269 ------TVLRVLPAGI-LMGLVVLLMALQ----------------------HSLLPAYPLLILIGALGGFFVVPMNALLQ 319 (393)
T ss_pred ------cccchHHHHH-HHHHHHHHHHHH----------------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 2233445554 333333322221 24555667777889999998888888888
Q ss_pred hhcChhh-HHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611 356 DQIPKEL-KSFGLSIYMSVLGVGGFLSSILVSIIN 389 (439)
Q Consensus 356 ~~aP~~~-~g~~~gl~~~~~~iG~~ig~~l~~~~~ 389 (439)
+..|++. +|+++|+.++.+++|..++..+.+.+.
T Consensus 320 ~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 354 (393)
T PRK11195 320 HRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV 354 (393)
T ss_pred hhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 8777765 799999999999999999999988664
No 40
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.59 E-value=2.1e-13 Score=139.16 Aligned_cols=89 Identities=12% Similarity=0.240 Sum_probs=76.2
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHH---HHhhhcccchh
Q 013611 29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVV---IYIQDNLNWAL 105 (439)
Q Consensus 29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~---g~l~~~~g~~~ 105 (439)
..+.+.++++|++.|+|.|...+...++++|++|+++ |++++++++.+.++|.++|+.++ +...+..+||+
T Consensus 124 ~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~ 197 (481)
T TIGR00879 124 ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRI 197 (481)
T ss_pred ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHH
Confidence 3445689999999999999999999999999999887 99999999999999999999999 77777889999
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 013611 106 GFGIPCAFMVAALVLFLL 123 (439)
Q Consensus 106 ~F~i~~~~~~i~~~l~~~ 123 (439)
.|++.++..++.+...++
T Consensus 198 ~f~~~~~~~~~~~~~~~~ 215 (481)
T TIGR00879 198 PLGLQLIPAGLLFLGLFF 215 (481)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999976655555444433
No 41
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.59 E-value=8.3e-13 Score=131.60 Aligned_cols=268 Identities=14% Similarity=0.072 Sum_probs=156.7
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI 109 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i 109 (439)
.+.+.+++.|++.|++.+...|...+++.|.+|+++ |++++++.+...++|..+|+.+++++.+..+||+.|++
T Consensus 91 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 164 (385)
T TIGR00710 91 NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAF 164 (385)
T ss_pred ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 457788999999999999999999999999999876 99999999999999999999999999998999999998
Q ss_pred HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCC
Q 013611 110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGK 189 (439)
Q Consensus 110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (439)
.++..++..+..++..++. +++++++.... .+ +..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----------------------------~~-~~~------------- 199 (385)
T TIGR00710 165 LSLAGILLSALIFFILPET---LPYEARIQIST----------------------------YF-ETF------------- 199 (385)
T ss_pred HHHHHHHHHHHHHHhCCCC---CCCcccCCHHH----------------------------HH-HHH-------------
Confidence 8776666555443322211 11110000000 00 000
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhh
Q 013611 190 LCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVP 269 (439)
Q Consensus 190 ~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~ 269 (439)
.+..+.++..... +.....+..+.......+....+ +.+.+ ....+.+.....+..++..++.+++.++
T Consensus 200 ----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~g~~---~~~~g~~~~~~~~~~~~~~~~~g~l~~~ 268 (385)
T TIGR00710 200 ----LLLLKSKMFWGYA---LIYGASFGGFFAFFSGAPFVYID-IMGVS---PSVFGLLFALNIIAMIFGGFLNGRFIKK 268 (385)
T ss_pred ----HHHHcCchhHHHH---HHHHHHHHHHHHHHHcChHHHHH-HcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000111111111 11111111111111111111100 11110 1223445555566666666666665432
Q ss_pred hcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhh
Q 013611 270 ITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVG 349 (439)
Q Consensus 270 ~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~ 349 (439)
+ +.++.+.++..+.+++..++...... ...+.+..+....+.++|.....+.
T Consensus 269 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~g~~~~~~~~~ 320 (385)
T TIGR00710 269 W-----------GAKSLLRMGLILFAVSAVLLEITAIL-----------------GLGSWAMIIGPMMFVGIGNSMISSI 320 (385)
T ss_pred c-----------CHHHHHHHHHHHHHHHHHHHHHHHHh-----------------ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 2 33445566776666666555543210 0012334455567788888888777
Q ss_pred hHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 013611 350 LQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSII 388 (439)
Q Consensus 350 ~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~ 388 (439)
....+.+..| +.+|+++++.+.....++.+.+.+.+..
T Consensus 321 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~ 358 (385)
T TIGR00710 321 AMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLI 358 (385)
T ss_pred HHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777776 6799999999888766555555555543
No 42
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.58 E-value=1.2e-12 Score=130.32 Aligned_cols=86 Identities=13% Similarity=0.155 Sum_probs=76.1
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI 109 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i 109 (439)
.+.+.+.+.+++.|++.+...+...+++.|.+|+++ |++++++.+.+.++|..+||.+++++.+..+|++.|++
T Consensus 77 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 150 (377)
T PRK11102 77 QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWV 150 (377)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 356778899999999999999999999999999876 99999999999999999999999999998999999998
Q ss_pred HHHHHHHHHHHH
Q 013611 110 PCAFMVAALVLF 121 (439)
Q Consensus 110 ~~~~~~i~~~l~ 121 (439)
.++..++..+..
T Consensus 151 ~~~~~~~~~~~~ 162 (377)
T PRK11102 151 LALAAILAAALV 162 (377)
T ss_pred HHHHHHHHHHHH
Confidence 876666655443
No 43
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.58 E-value=5.1e-13 Score=132.12 Aligned_cols=288 Identities=9% Similarity=0.023 Sum_probs=166.0
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH
Q 013611 29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFG 108 (439)
Q Consensus 29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~ 108 (439)
..+.+.+++.|.+.|+|.|...+.......+++| ++ |+++.+++..+.++|.++++.+.+.+.+..+||+.|+
T Consensus 88 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~ 160 (377)
T TIGR00890 88 ADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFI 160 (377)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHH
Confidence 3477889999999999999988888888888886 34 8999999999999999887777777777789999999
Q ss_pred HHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCC
Q 013611 109 IPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDG 188 (439)
Q Consensus 109 i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (439)
+.++..++..+..++..+. +|+++.++..+ .+ .+..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---------------------~~-~~~~~~---------------- 198 (377)
T TIGR00890 161 YMGIIFLLVIVLGAFLIGY----PPGQLIKTNIE---------------------VS-VKDYTV---------------- 198 (377)
T ss_pred HHHHHHHHHHHHHHHheec----CchhccccCcc---------------------cc-hhhhhH----------------
Confidence 9887666655443322211 11100000000 00 000000
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhh
Q 013611 189 KLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFV 268 (439)
Q Consensus 189 ~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~ 268 (439)
.+....+.... +.+........+......+....+ +.... .-..+.+..+..+..++..++.+++.+
T Consensus 199 -----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~d 265 (377)
T TIGR00890 199 -----WEMLRTPQFWV---LYLSFFLNAVSGLLLIGLYKPYGQ--SLGLS---DGFLVLAVSISSIFNGGGRPFLGALSD 265 (377)
T ss_pred -----HHHHcCccHHH---HHHHHHHHhHHHHHHHHHHHHHHH--HcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001111111 111111111111111111111111 11111 112344556666666666677777655
Q ss_pred hhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 013611 269 PITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIV 348 (439)
Q Consensus 269 ~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~ 348 (439)
++.+ ++.+.++.++.++++....... ..+.+......++.+++.+...+
T Consensus 266 r~g~-----------~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~g~~~~ 314 (377)
T TIGR00890 266 KIGR-----------QKTMSIVFGISAVGMAAMLFIP--------------------MLNDVLFLATVALVFFTWGGTIS 314 (377)
T ss_pred HHhh-----------hhhhhHHHHHHHHHHHHHHHcc--------------------cchhHHHHHHHHHHHHHhccchh
Confidence 4332 2345566666666665544331 01222233334555666655555
Q ss_pred hhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 013611 349 GLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGL 425 (439)
Q Consensus 349 ~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~ 425 (439)
.....+.+..|++.||+++|+.+....+|+.+++.+.+.+.+. .++...|...+++++++.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~----------------~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 315 LFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE----------------IGFEYTFIVTGAFALTSL 375 (377)
T ss_pred ccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh----------------hchhhHHHHHHHHHHHhc
Confidence 5556788899999999999999999999999999999988642 123556766666666653
No 44
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.57 E-value=1.2e-12 Score=134.72 Aligned_cols=86 Identities=13% Similarity=0.174 Sum_probs=73.9
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc---cchh
Q 013611 29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNL---NWAL 105 (439)
Q Consensus 29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~---g~~~ 105 (439)
..+...+++.|++.|+++|...|...+++++++|+++ |+++++++..+.++|.++|+.+..++.+.. +|+.
T Consensus 119 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~ 192 (467)
T PRK09556 119 SVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIG 192 (467)
T ss_pred cchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchh
Confidence 3578889999999999999999999999999999988 999999999999999999999988876643 6999
Q ss_pred hhHHHHHHHHHHHHH
Q 013611 106 GFGIPCAFMVAALVL 120 (439)
Q Consensus 106 ~F~i~~~~~~i~~~l 120 (439)
.|.+.++..++..++
T Consensus 193 ~f~~~g~~~~~~~i~ 207 (467)
T PRK09556 193 MFIFPSIIALIIGFI 207 (467)
T ss_pred HHHHHHHHHHHHHHH
Confidence 898877665544433
No 45
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.56 E-value=3e-12 Score=130.46 Aligned_cols=81 Identities=16% Similarity=0.329 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh--------ccc
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD--------NLN 102 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~--------~~g 102 (439)
+...+++.|+++|+|.|+..|...+++.+++|+++ |+++.+..+.+.++|.++++.+++.+.. .+|
T Consensus 123 ~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g 196 (432)
T PRK10406 123 APALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWG 196 (432)
T ss_pred HHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccc
Confidence 34578999999999999999999999999999987 9999999999999999999988766542 579
Q ss_pred chhhhHHHHHHHHHH
Q 013611 103 WALGFGIPCAFMVAA 117 (439)
Q Consensus 103 ~~~~F~i~~~~~~i~ 117 (439)
||+.|++.++..++.
T Consensus 197 Wr~~F~i~~~~~ll~ 211 (432)
T PRK10406 197 WRIPFALGAVLAVVA 211 (432)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999877654443
No 46
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.55 E-value=1.9e-12 Score=133.41 Aligned_cols=86 Identities=19% Similarity=0.237 Sum_probs=73.4
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhh--------hcc
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQ--------DNL 101 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~--------~~~ 101 (439)
.....++++|++.|++.|...|...++++|++|+++ |++++++...+..+|.++++.+++.+. +.+
T Consensus 118 ~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 191 (479)
T PRK10077 118 GYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTD 191 (479)
T ss_pred hHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccC
Confidence 346778999999999999999999999999999987 999999999999999999998877653 357
Q ss_pred cchhhhHHHHHHHHHHHHHH
Q 013611 102 NWALGFGIPCAFMVAALVLF 121 (439)
Q Consensus 102 g~~~~F~i~~~~~~i~~~l~ 121 (439)
+||+.|++.++..++..+..
T Consensus 192 gWr~~f~~~~~~~~~~~~~~ 211 (479)
T PRK10077 192 GWRYMFASEAIPALLFLMLL 211 (479)
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 99999998876666654443
No 47
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.55 E-value=3.3e-12 Score=128.44 Aligned_cols=285 Identities=12% Similarity=0.068 Sum_probs=152.3
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhh--hhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKS--SFFNWWYFGISFGANSTILVVIYIQDNLNWALGFG 108 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~--~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~ 108 (439)
+.+.+++.+.+.+...+...|...++..|+.++++ |+ ...++...+.++|.++||.+++++.+++|||..|+
T Consensus 104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~ 177 (393)
T PRK15011 104 NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG------REAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYL 177 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc------chHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHH
Confidence 44444444444444445678888888888776554 43 34578899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCC
Q 013611 109 IPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDG 188 (439)
Q Consensus 109 i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (439)
+.++..++..+..+...++.+.++++. + .+ .+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------------------------~~----~~-------------- 209 (393)
T PRK15011 178 SAAVAFIVCGVMVWLFLPSMRKELPLA--T----------------------------GT----LE-------------- 209 (393)
T ss_pred HHHHHHHHHHHHHHhhcCccCCCCccc--c----------------------------cc----cc--------------
Confidence 888766655544333222111110000 0 00 00
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhh
Q 013611 189 KLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFV 268 (439)
Q Consensus 189 ~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~ 268 (439)
.. .++++..... +......+..+.+.....+...+ ...+ -.....+.+..+.....++..++.+++.+
T Consensus 210 -~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~l~---~~~~-~~~~~~g~~~~~~~~~~i~~~~~~G~l~d 277 (393)
T PRK15011 210 -AP----RRNRRDTLLL---FVICTLMWGTNSLYIINMPLFII---NELH-LPEKLAGVMMGTAAGLEIPTMLIAGYFAK 277 (393)
T ss_pred -cc----ccccccHHHH---HHHHHHHHHHHHHHHHHHHHHHH---HHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0001111111 11112222222222222221111 0111 00112233334444444444555666554
Q ss_pred hhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 013611 269 PITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIV 348 (439)
Q Consensus 269 ~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~ 348 (439)
++.+| +.+..+.+...+.+...... .+.++.+...++.+++.+...+
T Consensus 278 r~g~~-----------~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~l~~~~l~~~~~g~~~~ 324 (393)
T PRK15011 278 RLGKR-----------FLMRVAAVAGVCFYAGMLMA----------------------HSPAILLGLQLLNAIYIGILGG 324 (393)
T ss_pred HhChH-----------HHHHHHHHHHHHHHHHHHHH----------------------hhHHHHHHHHHHHHHHHHHHHH
Confidence 33222 23444444444333222211 1234444555666666666555
Q ss_pred hhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHH
Q 013611 349 GLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAF 428 (439)
Q Consensus 349 ~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~ 428 (439)
.......+..|+ .+|+++++++...++|+.+|+.+++.+.+. .++...|...+++++++.+++
T Consensus 325 ~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~----------------~g~~~~~~~~~~~~~~~~~~~ 387 (393)
T PRK15011 325 IGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEI----------------WNYHAVFWFALVMIIATLFCL 387 (393)
T ss_pred HHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hhhHHHHHHHHHHHHHHHHHH
Confidence 555666677776 599999999999999999999999988642 123556666666666666655
Q ss_pred HHH
Q 013611 429 LYF 431 (439)
Q Consensus 429 ~~~ 431 (439)
+..
T Consensus 388 ~~~ 390 (393)
T PRK15011 388 LRI 390 (393)
T ss_pred Hhh
Confidence 543
No 48
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.55 E-value=5.2e-12 Score=130.85 Aligned_cols=299 Identities=13% Similarity=0.124 Sum_probs=172.8
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh-cccchhhh
Q 013611 29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD-NLNWALGF 107 (439)
Q Consensus 29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~-~~g~~~~F 107 (439)
..+.+.+.+.+++.+++.+...+...++..|++|+++ |+++.++...+.++|.++|+.+++++.+ ..|||..|
T Consensus 104 ~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f 177 (491)
T PRK11010 104 GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMY 177 (491)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHH
Confidence 4567788889999999999999999999999999877 9999999999999999999999999998 57999999
Q ss_pred HHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCC
Q 013611 108 GIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLED 187 (439)
Q Consensus 108 ~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (439)
++.++..++..+..++.++. .+.++++ +...+ ...+.
T Consensus 178 ~i~a~l~ll~~l~~~~~~e~-~~~~~~~--~~~~~----------------------------~~~~~------------ 214 (491)
T PRK11010 178 WLMAALLIPCIIATLLAPEP-TDTIPVP--KTLEQ----------------------------AVVAP------------ 214 (491)
T ss_pred HHHHHHHHHHHHHHHhcCCC-ccccccc--cchhh----------------------------hHHHH------------
Confidence 99887766665544332211 1000000 00000 00000
Q ss_pred CCCCchhhHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhh-hhHHHHHHHHHHhhhh
Q 013611 188 GKLCTLEDVEEAKALLRLIPI-WATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQ-LFIGIGIITFIPIYDC 265 (439)
Q Consensus 188 ~~~~~~~~v~~~k~~~~~l~~-~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~-~in~~~iii~~pl~~~ 265 (439)
..+...+++......+ +.........+. +...+..+. .+.. .-..+.+. .+..+..++..++.++
T Consensus 215 -----l~~~~~~~~~~~~ll~~~l~~~~~~~~~~-~~~~~l~~~----~G~s---~~~~g~~~~~~g~i~~iiG~ll~G~ 281 (491)
T PRK11010 215 -----LRDFFGRNNAWLILLLIVLYKLGDAFAMS-LTTTFLIRG----VGFD---AGEVGLVNKTLGLLATIVGALYGGI 281 (491)
T ss_pred -----HHHHHcCcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh----cCCC---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000001111111111 111111111111 111121111 1110 11122232 2333444555555555
Q ss_pred hhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHH
Q 013611 266 IFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVF 345 (439)
Q Consensus 266 ~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l 345 (439)
+.+++.+ ++.+.++.++.+++......... ...+.+.+....++..+..++
T Consensus 282 L~dr~g~-----------~~~l~i~~~l~~l~~l~~~~l~~------------------~~~~~~~l~~~~~l~~~~~g~ 332 (491)
T PRK11010 282 LMQRLSL-----------FRALMIFGILQGVSNAGYWLLSI------------------TDKNLYSMGAAVFFENLCGGM 332 (491)
T ss_pred HHHHHhH-----------HHHHHHHHHHHHHHHHHHHHHHh------------------ccccHHHHHHHHHHHHHHHHH
Confidence 5443322 23344444444444332222110 011344444455665666666
Q ss_pred HhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 013611 346 TIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGL 425 (439)
Q Consensus 346 ~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~ 425 (439)
..+.......+.+|++.+++.+|+.+...++|..+++.+.|.+.+. .++...|.+.+++++++.
T Consensus 333 ~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~----------------~G~~~~f~~~~~~~l~~l 396 (491)
T PRK11010 333 GTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEA----------------HGWPTFYLFSVAAAVPGL 396 (491)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hChHHHHHHHHHHHHHHH
Confidence 6666778888999999999999999999999999888888888642 134667877888888887
Q ss_pred HHHHHHhcc
Q 013611 426 LAFLYFAKS 434 (439)
Q Consensus 426 ~i~~~~~~~ 434 (439)
++.....++
T Consensus 397 ~~~~~~~~~ 405 (491)
T PRK11010 397 LLLLVCRQT 405 (491)
T ss_pred HHHHHHHhc
Confidence 777666443
No 49
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.54 E-value=6.7e-12 Score=128.66 Aligned_cols=83 Identities=14% Similarity=0.218 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHH-HHHHHHHHHhhhcccchhhhHH
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGA-NSTILVVIYIQDNLNWALGFGI 109 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~-~ig~~l~g~l~~~~g~~~~F~i 109 (439)
+...+++.|++.|++.|...|...+...+++|+++ |++++++++.+.++|. +++|+++..+....+||+.|++
T Consensus 119 ~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i 192 (452)
T PRK11273 119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYM 192 (452)
T ss_pred cHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHH
Confidence 56778888999999999999998899999999877 9999999999999996 5667665444444599999999
Q ss_pred HHHHHHHHHH
Q 013611 110 PCAFMVAALV 119 (439)
Q Consensus 110 ~~~~~~i~~~ 119 (439)
.++..++..+
T Consensus 193 ~~~~~~~~~~ 202 (452)
T PRK11273 193 PAFAAILVAL 202 (452)
T ss_pred HHHHHHHHHH
Confidence 8766555443
No 50
>TIGR00895 2A0115 benzoate transport.
Probab=99.54 E-value=2.5e-12 Score=128.33 Aligned_cols=293 Identities=14% Similarity=0.118 Sum_probs=159.1
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI 109 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i 109 (439)
.+.+.+++.+++.|++.|...|...+++.|.+|+++ |++++++...+.++|..+|+.+++++.+..+|++.|.+
T Consensus 103 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~ 176 (398)
T TIGR00895 103 TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYV 176 (398)
T ss_pred cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhh
Confidence 356778899999999999999999999999999876 99999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCC
Q 013611 110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGK 189 (439)
Q Consensus 110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (439)
.++...+...+.+...++......+++++... +........ . ...+ ++.... .+....
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~--------~~~~-----~~~~~~----~~~~~~ 234 (398)
T TIGR00895 177 GGIAPLLLLLLLMRFLPESIDFLVSKRPETVR---RIVNAIAPQ--M--------QAEA-----QSALPE----QKATQG 234 (398)
T ss_pred hhhHHHHHHHHHHHhCCCCChHHHhcCHHHHH---HHHHHHHHh--c--------cccc-----cccccc----cccccc
Confidence 86444443333322222111000000000000 000000000 0 0000 000000 000000
Q ss_pred CCch--hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhh
Q 013611 190 LCTL--EDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIF 267 (439)
Q Consensus 190 ~~~~--~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~ 267 (439)
..++ +...+.+...+...++.........+.......+.... +.+ ......+.+..+..+..++..++.+++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 309 (398)
T TIGR00895 235 TKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMV----ELG-FSLSLAATGGALFNFGGVIGSIIFGWLA 309 (398)
T ss_pred hhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00001111111111111111111111111111221111 111 0011223444445555555555555544
Q ss_pred hhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHh
Q 013611 268 VPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTI 347 (439)
Q Consensus 268 ~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~ 347 (439)
+|. +.+ ++.++..+.++......... .+.+...+..++.+++.+...
T Consensus 310 ----~~~-------~~~-~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~ 356 (398)
T TIGR00895 310 ----DRL-------GPR-VTALLLLLGAVFAVLVGSTL---------------------FSPTLLLLLGAIAGFFVNGGQ 356 (398)
T ss_pred ----hhc-------chH-HHHHHHHHHHHHHHHHHHHh---------------------hCHHHHHHHHHHHHHHHHHHH
Confidence 332 222 34444444443333322211 134445666788899998888
Q ss_pred hhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 013611 348 VGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSII 388 (439)
Q Consensus 348 ~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~ 388 (439)
+.....+.+..|++.||+++|+.+....+|..+|+.+.|.+
T Consensus 357 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 357 SGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 88889999999999999999999999999999999988854
No 51
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.54 E-value=2.7e-12 Score=130.21 Aligned_cols=79 Identities=15% Similarity=0.320 Sum_probs=72.3
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH
Q 013611 29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFG 108 (439)
Q Consensus 29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~ 108 (439)
..+.+.++++|++.|+|.|...|...+++.|.+|+++ |+++.+++..+.++|.++++.+++++.+.++||+.|+
T Consensus 103 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~ 176 (426)
T PRK12307 103 ASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFF 176 (426)
T ss_pred HhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHH
Confidence 3467889999999999999999999999999999877 9999999999999999999999999999999999999
Q ss_pred HHHHH
Q 013611 109 IPCAF 113 (439)
Q Consensus 109 i~~~~ 113 (439)
+..+.
T Consensus 177 i~~~~ 181 (426)
T PRK12307 177 VGLLP 181 (426)
T ss_pred HHHHH
Confidence 86543
No 52
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.53 E-value=6.8e-12 Score=125.59 Aligned_cols=256 Identities=10% Similarity=0.027 Sum_probs=144.6
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH
Q 013611 29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFG 108 (439)
Q Consensus 29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~ 108 (439)
..+.+.+.+.|++.|++.|...|...+...+..++++ |++++++++.+.++|..+||.+++++.+...+.. ++
T Consensus 91 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~-~~ 163 (381)
T PRK03633 91 MVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVL-PW 163 (381)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhcccccccchH-HH
Confidence 3467888999999999999999998888888888766 9999999999999999999999999987543333 22
Q ss_pred HHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCC
Q 013611 109 IPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDG 188 (439)
Q Consensus 109 i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (439)
.........+.+ ++.+. ++++.++++.. ++
T Consensus 164 ~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~-----------------------------~~---------------- 193 (381)
T PRK03633 164 VTGLVLAAILPL-LFTRI----LNQQAENHDST-----------------------------SI---------------- 193 (381)
T ss_pred HHHHHHHHHHHH-HHhcc----cCCCCCCCCCC-----------------------------CH----------------
Confidence 222211111111 11111 11111000000 00
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhh
Q 013611 189 KLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFV 268 (439)
Q Consensus 189 ~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~ 268 (439)
.+....+.... ...........+....+..+...++. .. + ....+.+..+..+..++...+.+++
T Consensus 194 -----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~lp~~~~~~--g~--s-~~~~g~~~~~~~~~~~~~~~~~g~l-- 258 (381)
T PRK03633 194 -----WPMLKLRQARL---GVNGCIISGIVLGSLYGLMPLYLNHQ--GM--S-DASIGFWMALLVSAGILGQWPIGRL-- 258 (381)
T ss_pred -----HHHHHhcchHH---HHHHHHHHHHHHHHHHHHHHHHHHHc--CC--C-HHHHHHHHHHHHHHHHHHHhhhHHH--
Confidence 00111111111 11111111112222222222211111 11 1 1112334444445555544444444
Q ss_pred hhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 013611 269 PITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIV 348 (439)
Q Consensus 269 ~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~ 348 (439)
.+|+ +.++.+.++..+.+++..... . .+.......+.++++....|
T Consensus 259 --~dr~-------~~~~~l~~~~~~~~~~~~~~~-~------------------------~~~~~~~~~l~g~~~~~~~p 304 (381)
T PRK03633 259 --ADRF-------GRLLVLRVQVFVVILGSIAML-S------------------------QAAMAPALFILGAAGFTLYP 304 (381)
T ss_pred --HHHc-------CcHHHHHHHHHHHHHHHHHHh-h------------------------hHHHHHHHHHHHHHHHhHHH
Confidence 3442 333455566666665543322 1 11122345666777777778
Q ss_pred hhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611 349 GLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE 390 (439)
Q Consensus 349 ~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~ 390 (439)
.....+.+.+|++.++.+.+.+++..++|+.+||.+.|.+.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~ 346 (381)
T PRK03633 305 VAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQ 346 (381)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999999999999999999999999999998864
No 53
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.52 E-value=3.9e-12 Score=125.96 Aligned_cols=263 Identities=10% Similarity=0.078 Sum_probs=153.3
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc-------
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLN------- 102 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g------- 102 (439)
.+.+.+....++.+++.+...|...+++.|++|+++ |+++.++...+.++|.++|+.+++++....+
T Consensus 81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~ 154 (356)
T TIGR00901 81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLIT 154 (356)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence 455566666677889999999999999999998877 9999999999999999999999999988888
Q ss_pred -chhhhHHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCC
Q 013611 103 -WALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATP 181 (439)
Q Consensus 103 -~~~~F~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (439)
||..|++.++..++...+.++..++..++++++ + + +..+..+.
T Consensus 155 ~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~--~---~-------------------------~~~~~~~~------ 198 (356)
T TIGR00901 155 LWGYIFFWTALLILPGLLVTLFLAKEPQEDASVP--K---P-------------------------LTQAVLKP------ 198 (356)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhccCCCcccccc--h---h-------------------------HHHHHHHH------
Confidence 999999988777765554443222211100000 0 0 00000000
Q ss_pred CCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchh---hhhhHH-HHHH
Q 013611 182 DVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAAS---LQLFIG-IGII 257 (439)
Q Consensus 182 ~~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~---~~~in~-~~ii 257 (439)
..+..+.+...+...+.+....+...+.+..+.++....+ .| .+++. +..+.. +..+
T Consensus 199 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~g----~~~~~~g~~~~~~~~~~~~ 259 (356)
T TIGR00901 199 -----------IREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD----MG----FSKEEIALVAKINGLLGAI 259 (356)
T ss_pred -----------HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cC----CCHHHHHHHhHHHHHHHHH
Confidence 0001111110112222222222333333333333332221 11 22222 333333 2233
Q ss_pred HHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHH
Q 013611 258 TFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYL 337 (439)
Q Consensus 258 i~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 337 (439)
+..++.+++. +| .++++.+.++.++.+++..+..+.... . +..+ ....+.+.++...+
T Consensus 260 ~g~~~~g~l~----~r-------~g~~~~l~~~~~~~~~~~~~~~~~~~~--------~--~~~~-~~~~~~~~~~~~~~ 317 (356)
T TIGR00901 260 LGGLIGGIIM----QP-------LNILYALLLFGIVQALTNAGFVWLASN--------G--HHDG-ITFPHLLMLFLTIT 317 (356)
T ss_pred HHHHHHHHHH----hh-------hhHHHHHHHHHHHHHHHHHHHHHHHhc--------C--cccc-cccchHHHHHHHHH
Confidence 4444444433 33 234455677777776665554443110 0 0000 00123455677778
Q ss_pred HHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhh
Q 013611 338 LCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLG 375 (439)
Q Consensus 338 l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~ 375 (439)
+.++++++..+....+..+.+|+++||+++|+.+...+
T Consensus 318 l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 318 LEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 88999999999999999999999999999999887665
No 54
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.52 E-value=2.4e-12 Score=128.13 Aligned_cols=81 Identities=14% Similarity=0.274 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhh--------hcccch
Q 013611 33 IVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQ--------DNLNWA 104 (439)
Q Consensus 33 ~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~--------~~~g~~ 104 (439)
..+++.|++.|+|.|...|...+++.|.+++++ |+++.++...+.++|.++++.+++.+. +.++||
T Consensus 97 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~ 170 (394)
T TIGR00883 97 ILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWR 170 (394)
T ss_pred HHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchH
Confidence 468899999999999999999999999999887 999999999999999999999887764 357999
Q ss_pred hhhHHHHHHHHHHHH
Q 013611 105 LGFGIPCAFMVAALV 119 (439)
Q Consensus 105 ~~F~i~~~~~~i~~~ 119 (439)
+.|.+.++..++...
T Consensus 171 ~~~~~~~~~~~~~~~ 185 (394)
T TIGR00883 171 IPFLVSAVLVLIGLY 185 (394)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999987765555443
No 55
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.52 E-value=3.3e-12 Score=127.97 Aligned_cols=83 Identities=18% Similarity=0.227 Sum_probs=73.2
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc--chhhh
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLN--WALGF 107 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g--~~~~F 107 (439)
.+.+.+++.|++.|+|.|+..|...+++.|++|+++ |+++++++..+.++|..+|+.+++.+.+..+ ||+.|
T Consensus 98 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f 171 (405)
T TIGR00891 98 PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALF 171 (405)
T ss_pred ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHH
Confidence 467788999999999999999999999999999877 9999999999999999999999999988766 99999
Q ss_pred HHHHHHHHHHH
Q 013611 108 GIPCAFMVAAL 118 (439)
Q Consensus 108 ~i~~~~~~i~~ 118 (439)
.+.++..++.+
T Consensus 172 ~~~~~~~~~~~ 182 (405)
T TIGR00891 172 FISILPIIFAL 182 (405)
T ss_pred HHHHHHHHHHH
Confidence 88765444443
No 56
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.52 E-value=7.2e-12 Score=127.92 Aligned_cols=84 Identities=14% Similarity=0.239 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHH-hhhcccchhhhHH
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIY-IQDNLNWALGFGI 109 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~-l~~~~g~~~~F~i 109 (439)
+...+++.|++.|++.|...|...+.+.+++|+++ |++++++++.+.++|..+++.+.+. +.+..+||+.|++
T Consensus 117 ~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~ 190 (438)
T TIGR00712 117 SIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYF 190 (438)
T ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 45677888999999999999999999999999988 9999999999999999999888776 4445799999999
Q ss_pred HHHHHHHHHHH
Q 013611 110 PCAFMVAALVL 120 (439)
Q Consensus 110 ~~~~~~i~~~l 120 (439)
.++..++..++
T Consensus 191 ~~~~~~i~~~~ 201 (438)
T TIGR00712 191 PAICAIIVALF 201 (438)
T ss_pred HHHHHHHHHHH
Confidence 88776665443
No 57
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.51 E-value=5.1e-12 Score=128.08 Aligned_cols=87 Identities=9% Similarity=0.041 Sum_probs=76.2
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH
Q 013611 29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFG 108 (439)
Q Consensus 29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~ 108 (439)
..+...+.++|+++|++.+...+...+.+.|.+++++ |.++++++..+.++|+.+||.+++++.+..|||+.|+
T Consensus 101 a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~ 174 (413)
T PRK15403 101 TTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFA 174 (413)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3467889999999999999877788888999999877 8999999999999999999999999998899999999
Q ss_pred HHHHHHHHHHHHH
Q 013611 109 IPCAFMVAALVLF 121 (439)
Q Consensus 109 i~~~~~~i~~~l~ 121 (439)
+.++..++..+..
T Consensus 175 ~~~~~~~i~~~~~ 187 (413)
T PRK15403 175 IIAVMGLIAFVGL 187 (413)
T ss_pred HHHHHHHHHHHHH
Confidence 9887766665543
No 58
>PRK09952 shikimate transporter; Provisional
Probab=99.51 E-value=2.8e-11 Score=123.64 Aligned_cols=77 Identities=12% Similarity=0.173 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhh--------hcccch
Q 013611 33 IVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQ--------DNLNWA 104 (439)
Q Consensus 33 ~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~--------~~~g~~ 104 (439)
..+.+.|+++|+|.|+..|...+++.+++|+++ |+++.+....+..+|.+++..+..++. +.+|||
T Consensus 126 ~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr 199 (438)
T PRK09952 126 VLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWR 199 (438)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChH
Confidence 368889999999999999999999999999987 999999999999999999988877765 257999
Q ss_pred hhhHHHHHHHH
Q 013611 105 LGFGIPCAFMV 115 (439)
Q Consensus 105 ~~F~i~~~~~~ 115 (439)
+.|++.++..+
T Consensus 200 ~~f~~~~~~~l 210 (438)
T PRK09952 200 IPFLFSIVLVL 210 (438)
T ss_pred HHHHHHHHHHH
Confidence 99998875443
No 59
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.51 E-value=5.6e-12 Score=143.60 Aligned_cols=272 Identities=10% Similarity=-0.001 Sum_probs=156.3
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc--------c
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDN--------L 101 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~--------~ 101 (439)
.+.+.+++.|++.|++.|...|...+++.|++|+++ |+++++++..+.++|.++|+.+++++.+. +
T Consensus 101 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~ 174 (1146)
T PRK08633 101 GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEI 174 (1146)
T ss_pred ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 357889999999999999999999999999999987 99999999999999999999999999875 2
Q ss_pred -cchhhhHHHHHHHH-HHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhc
Q 013611 102 -NWALGFGIPCAFMV-AALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLA 179 (439)
Q Consensus 102 -g~~~~F~i~~~~~~-i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (439)
+|++.+.+..+... +++++.+. .++.....++. .+... ........+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~------------------------~~~~~~~~~~~--- 225 (1146)
T PRK08633 175 LGRIAPAGLVLLAVAVLGLIFAYR-LPKVPAAAPEV-FDKKK------------------------YLFPKLLWRNL--- 225 (1146)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhc-CcCCCCCCccc-ccccc------------------------cccHHHHHHHH---
Confidence 34444433332222 22222222 12111000000 00000 00000000000
Q ss_pred CCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHH
Q 013611 180 TPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITF 259 (439)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~ 259 (439)
..+...+.+. ...+....++.......+.++.... ...|.......+++..+..+..++.
T Consensus 226 --------------~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~s~~~~~g~~~~~~~ig~~~g 285 (1146)
T PRK08633 226 --------------KLLRSDRVLW---LAIIGLSYFWFISQLAQANFPAYAK---EVLGLDNTFQVQYLLAASAIGIGIG 285 (1146)
T ss_pred --------------HHHhcCcHHH---HHHHHHHHHHHHHHHHHHhhHHHHH---HHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 0000111111 1111222222222222222222111 1111000112344555555555555
Q ss_pred HHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHH
Q 013611 260 IPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLC 339 (439)
Q Consensus 260 ~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 339 (439)
..+.+++. +|+ ...+.+.++.++++++++++... .+.+++++..++.
T Consensus 286 ~~~~g~l~----~r~-------~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~ 332 (1146)
T PRK08633 286 SLLAGRLS----GRH-------IELGLVPLGALGLALSLFLLPTA----------------------PSLASVLVLFFLF 332 (1146)
T ss_pred HHHHHHHh----CCc-------eEccchhHHHHHHHHHHHHHHHh----------------------hhHHHHHHHHHHH
Confidence 55555543 332 22334556666666666555543 2455667778888
Q ss_pred HHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611 340 GIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN 389 (439)
Q Consensus 340 gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~ 389 (439)
|++.++..+....++.+.+|++.||+++|+.++..++|..+++.+.+.+.
T Consensus 333 g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 333 GFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred HHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888899999999999999999999999999988877766654
No 60
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.50 E-value=1.9e-12 Score=128.06 Aligned_cols=86 Identities=17% Similarity=0.240 Sum_probs=75.1
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHH-HHHHHhhhcccchhhhH
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTI-LVVIYIQDNLNWALGFG 108 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~-~l~g~l~~~~g~~~~F~ 108 (439)
.+.+.+++.|++.|++.|...|...+++.+++|+++ |++++++...+.++|..+++ .+++.+.+..+|++.|+
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 154 (379)
T TIGR00881 81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFI 154 (379)
T ss_pred hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHH
Confidence 367889999999999999999999999999999877 99999999999999999999 67888888889999999
Q ss_pred HHHHHHHHHHHHH
Q 013611 109 IPCAFMVAALVLF 121 (439)
Q Consensus 109 i~~~~~~i~~~l~ 121 (439)
+.++..++..++.
T Consensus 155 ~~~~~~~~~~~~~ 167 (379)
T TIGR00881 155 VPGIIAIIVSLIC 167 (379)
T ss_pred HHHHHHHHHHHHH
Confidence 8876655544443
No 61
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.49 E-value=7.1e-12 Score=126.97 Aligned_cols=87 Identities=15% Similarity=0.077 Sum_probs=75.1
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh------ccc
Q 013611 29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD------NLN 102 (439)
Q Consensus 29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~------~~g 102 (439)
..+...+++.|++.|+++|...|...+++.+++|+++ |+++.+++..+.++|.++|+.+++++.+ ..|
T Consensus 93 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g 166 (412)
T TIGR02332 93 ATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARANALFMIAMPVTMALGLILSGYILALDGLMALKG 166 (412)
T ss_pred hcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccc
Confidence 3457789999999999999999999999999999876 9999999999999999999999999864 369
Q ss_pred chhhhHHHHHHHHHHHHHH
Q 013611 103 WALGFGIPCAFMVAALVLF 121 (439)
Q Consensus 103 ~~~~F~i~~~~~~i~~~l~ 121 (439)
||+.|.+.++..++...+.
T Consensus 167 wr~~f~~~~~~~l~~~~~~ 185 (412)
T TIGR02332 167 WQWLFLLEGFPSVILGVMT 185 (412)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 9999999876665544433
No 62
>TIGR00898 2A0119 cation transport protein.
Probab=99.49 E-value=1.7e-11 Score=127.23 Aligned_cols=317 Identities=14% Similarity=0.097 Sum_probs=168.2
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI 109 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i 109 (439)
.+.+.+++.|++.|++.|+..|...+++.+.+|+++ |+++.++...+..+|.++++.++.++.+ ||+.|++
T Consensus 178 ~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~ 248 (505)
T TIGR00898 178 PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLA 248 (505)
T ss_pred ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHH
Confidence 467789999999999999999999999999999987 9999999999999999999999877754 9999998
Q ss_pred HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCC
Q 013611 110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGK 189 (439)
Q Consensus 110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (439)
.++..++..+..++..+..+....+ ....+-.+.+....+......+. +..+....... .....
T Consensus 249 ~~i~~~~~~~~~~~~~esp~~l~~~---~~~~~a~~~l~~~~~~~~~~~~~----------~~~~~~~~~~~---~~~~~ 312 (505)
T TIGR00898 249 VSLPTFLFFLLSWFVPESPRWLISQ---GRIEEALKILQRIAKINGKKLPA----------EVLSLSLEKDL---SSSKK 312 (505)
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHC---CCHHHHHHHHHHHHHHcCCCCCH----------HHHhhhhhhhh---hhccC
Confidence 8876666555443322211000001 11111112221111111100000 00000000000 00000
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhh
Q 013611 190 LCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVP 269 (439)
Q Consensus 190 ~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~ 269 (439)
..+..+....+++. ...+.....|............ ..+ ..+ .+......+.++..+....+...+.+
T Consensus 313 ~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~----~~~~~~~~~~~~~~i~~~~~~~~l~d- 380 (505)
T TIGR00898 313 QYSFLDLFRTPNLR---KTTLCLMMLWFTTAFSYYGLVL---DLG-NLG----GNIYLDLFISGLVELPAKLITLLLID- 380 (505)
T ss_pred CCcHHHHhCChHHH---HHHHHHHHHHHHHHHHHHHHhc---ccc-ccC----CChHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 00000011111111 1111111122221111111111 111 111 11112222333333333333344333
Q ss_pred hcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhh
Q 013611 270 ITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVG 349 (439)
Q Consensus 270 ~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~ 349 (439)
|. +.++.+.+++++.+++++.+.+.. ....++.+...++.+++.....+.
T Consensus 381 ---r~-------grr~~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~ 430 (505)
T TIGR00898 381 ---RL-------GRRYTMAASLLLAGVALLLLLFVP--------------------VDLYFLRTALAVLGKFGITSAFQM 430 (505)
T ss_pred ---Hh-------CCHHHHHHHHHHHHHHHHHHHHcC--------------------CCchHHHHHHHHHHHHHHHHHHHH
Confidence 32 233455666777777766555431 112233444455666666666777
Q ss_pred hHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHH
Q 013611 350 LQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFL 429 (439)
Q Consensus 350 ~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~ 429 (439)
.+.+..+..|.+.|++++|+.+....+|+.++|.+.+ ..+ .+....+++.++++++++++.+
T Consensus 431 ~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-----------------~~~~~~~~~~~~~~~~~~~~~~ 492 (505)
T TIGR00898 431 VYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE-----------------KWLFLPLVLFGGLALLAGILTL 492 (505)
T ss_pred HHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-----------------HHHhhHHHHHHHHHHHHHHHHH
Confidence 7788899999999999999999999999999999888 432 1122345666666666665554
Q ss_pred HH
Q 013611 430 YF 431 (439)
Q Consensus 430 ~~ 431 (439)
++
T Consensus 493 ~l 494 (505)
T TIGR00898 493 FL 494 (505)
T ss_pred cC
Confidence 44
No 63
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.48 E-value=4.6e-11 Score=120.57 Aligned_cols=77 Identities=13% Similarity=0.046 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHH-HHHHHHHHHhhhcccchhhhHH
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGA-NSTILVVIYIQDNLNWALGFGI 109 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~-~ig~~l~g~l~~~~g~~~~F~i 109 (439)
+...+.+.|.+.|+|.+...+...+.+.+.+|+++ |+++.++...+.++|. .+||.+++++.+.+||+..++.
T Consensus 104 ~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~ 177 (402)
T TIGR00897 104 NYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS 177 (402)
T ss_pred cHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 56677889999999999888888888999998877 9999999999999996 6899999999888897766655
Q ss_pred HHHH
Q 013611 110 PCAF 113 (439)
Q Consensus 110 ~~~~ 113 (439)
....
T Consensus 178 ~~~~ 181 (402)
T TIGR00897 178 ALAF 181 (402)
T ss_pred HHHH
Confidence 4433
No 64
>PRK03699 putative transporter; Provisional
Probab=99.48 E-value=1.7e-11 Score=123.36 Aligned_cols=86 Identities=10% Similarity=0.201 Sum_probs=73.1
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh-cccchhhhH
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD-NLNWALGFG 108 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~-~~g~~~~F~ 108 (439)
.+.+.+++.|++.|++.|...+...+.+.+.+|+++ |+++++..+...++|..++|.+.+++.+ ..+||+.|.
T Consensus 93 ~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~ 166 (394)
T PRK03699 93 HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYA 166 (394)
T ss_pred chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 467788999999999999999999999999998766 8999999999999999999999988754 579999999
Q ss_pred HHHHHHHHHHHHH
Q 013611 109 IPCAFMVAALVLF 121 (439)
Q Consensus 109 i~~~~~~i~~~l~ 121 (439)
+.++..++..++.
T Consensus 167 ~~~~~~~~~~~~~ 179 (394)
T PRK03699 167 CIGLVYVAIFILT 179 (394)
T ss_pred HHHHHHHHHHHHH
Confidence 8776655554443
No 65
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.47 E-value=3.5e-11 Score=124.69 Aligned_cols=77 Identities=18% Similarity=0.268 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhh--------hcccchh
Q 013611 34 VFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQ--------DNLNWAL 105 (439)
Q Consensus 34 ~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~--------~~~g~~~ 105 (439)
.+++.|+++|+|.|+..|...+++.+++|+++ |+++.++...+.++|..+|+.++.++. ..+|||+
T Consensus 120 ~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~ 193 (490)
T PRK10642 120 LLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRI 193 (490)
T ss_pred HHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHH
Confidence 58999999999999999999999999999988 999999999999999888887765543 2589999
Q ss_pred hhHHHHHHHHH
Q 013611 106 GFGIPCAFMVA 116 (439)
Q Consensus 106 ~F~i~~~~~~i 116 (439)
.|++.++..++
T Consensus 194 ~f~i~~~~~l~ 204 (490)
T PRK10642 194 PFFIALPLGII 204 (490)
T ss_pred HHHHHHHHHHH
Confidence 99997654443
No 66
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.47 E-value=8.5e-12 Score=121.77 Aligned_cols=92 Identities=18% Similarity=0.279 Sum_probs=80.1
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHH--HHhhhcccchhh
Q 013611 29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVV--IYIQDNLNWALG 106 (439)
Q Consensus 29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~--g~l~~~~g~~~~ 106 (439)
..+.+.+.+-.++.|.-+|+-.|.....++.+|+++| |++..+++..+.|+|+++.|.+. +++..+++||.+
T Consensus 114 s~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~ 187 (448)
T COG2271 114 SPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAA 187 (448)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEEEehhhhhcccchHHHHHHHHHHHhccchhHH
Confidence 3478888889999999999999999999999999998 99999999999999999999999 999999999999
Q ss_pred hHHHHHHHH-HHHHHHHhcCc
Q 013611 107 FGIPCAFMV-AALVLFLLGTK 126 (439)
Q Consensus 107 F~i~~~~~~-i~~~l~~~~~~ 126 (439)
|++++++.+ ++++.++..+.
T Consensus 188 f~~pgiiaiival~~~~~~rd 208 (448)
T COG2271 188 FYFPGIIAIIVALILLFLLRD 208 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 999986644 45555554333
No 67
>PRK11043 putative transporter; Provisional
Probab=99.47 E-value=3.9e-11 Score=120.80 Aligned_cols=87 Identities=15% Similarity=0.183 Sum_probs=75.4
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI 109 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i 109 (439)
.+.+.+++.|++.|+|.+...+...+++.|.+++++ +.+.++......++|..+||.+++++.+.++||+.|++
T Consensus 92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~ 165 (401)
T PRK11043 92 ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFAT 165 (401)
T ss_pred cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 467788999999999999888888999999999876 88899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHH
Q 013611 110 PCAFMVAALVLFL 122 (439)
Q Consensus 110 ~~~~~~i~~~l~~ 122 (439)
.++..++..+..+
T Consensus 166 ~~~~~~~~~~~~~ 178 (401)
T PRK11043 166 LFAITLLLILPTL 178 (401)
T ss_pred HHHHHHHHHHHHH
Confidence 8766666554443
No 68
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.46 E-value=3.2e-11 Score=122.67 Aligned_cols=271 Identities=13% Similarity=0.139 Sum_probs=156.8
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhh-------hcccch
Q 013611 32 IIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQ-------DNLNWA 104 (439)
Q Consensus 32 ~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~-------~~~g~~ 104 (439)
...+.+.+.+.+++.+...+...++..+..++++ ||+++.++...+.++|.+++..+.+.+. +..+|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-----~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~ 173 (437)
T TIGR00792 99 LVYAYITYILLGLFYSFVNIPYWSLVPAITLDPR-----ERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWF 173 (437)
T ss_pred HHHHHHHHHHHHHHHHhhcccHhhCcccccCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHH
Confidence 4566677788889999988888999998876432 2999999999999999888877665554 246899
Q ss_pred hhhHHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCC
Q 013611 105 LGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVS 184 (439)
Q Consensus 105 ~~F~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (439)
+.|.+.++..++...+.+...++.+.+.++++ + +..+..+..
T Consensus 174 ~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~-~-----------------------------~~~~~~~~~-------- 215 (437)
T TIGR00792 174 MFALVLALIGVVSLIICFFGTKERYSEIPKNI-E-----------------------------KKLSLKQIF-------- 215 (437)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEecCCCCCccc-c-----------------------------cCCCHHHHH--------
Confidence 99988887666655544332222111001000 0 000000000
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhh
Q 013611 185 LEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYD 264 (439)
Q Consensus 185 ~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~ 264 (439)
+...+.|.+.. +.+.....+..+......... ..+...+ . .-..+++..+..+..++..|+.+
T Consensus 216 ---------~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~-~~~~~~~~~~~~i~~ii~~~~~~ 278 (437)
T TIGR00792 216 ---------KALFKNDQLLI---LCLAYLFYNLAFNIKNGVQVY---YFTYVLG-D-PELFSYMGSIAIVAGLIGVLLFP 278 (437)
T ss_pred ---------HHHhCCHHHHH---HHHHHHHHHHHHHHHcchhhe---eEeeecC-C-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111122221 112222222222221111111 1111111 1 11123444555566666666666
Q ss_pred hhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHH
Q 013611 265 CIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADV 344 (439)
Q Consensus 265 ~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~ 344 (439)
++.+ |. ++++.+.+|.++.++++....+.. .+.+..++..++.+++.+
T Consensus 279 ~l~~----r~-------g~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~ 326 (437)
T TIGR00792 279 RLVK----KF-------GRKILFAGGILLMVLGYLIFFFAG---------------------SNLPLILVLIILAGFGQN 326 (437)
T ss_pred HHHH----Hh-------CcHHHHHHHHHHHHHHHHHHHHcc---------------------hhHHHHHHHHHHHHHHHH
Confidence 6543 32 334456677777777765554431 134455666778888888
Q ss_pred HHhhhhHHHHHhhcC-------hhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccC
Q 013611 345 FTIVGLQEFFYDQIP-------KELKSFGLSIYMSVLGVGGFLSSILVSIINEATSR 394 (439)
Q Consensus 345 l~~~~~~~~~~~~aP-------~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~ 394 (439)
...+...+++.+.+| ++.+|+++|++++...+|+.+|+.+.+.+.+..++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 327 FVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 887777777777665 66789999999999999999999999988765443
No 69
>PRK15075 citrate-proton symporter; Provisional
Probab=99.45 E-value=6.1e-11 Score=120.91 Aligned_cols=73 Identities=14% Similarity=0.232 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhh--------hcccchh
Q 013611 34 VFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQ--------DNLNWAL 105 (439)
Q Consensus 34 ~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~--------~~~g~~~ 105 (439)
.++++|++.|++.|...|+..++..+++|+++ |+++.++...+.++|..+|+.+++.+. +.+|||+
T Consensus 119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~ 192 (434)
T PRK15075 119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRI 192 (434)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHhhCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHH
Confidence 57899999999999999999999999999988 999999999999999888888888763 4689999
Q ss_pred hhHHHHH
Q 013611 106 GFGIPCA 112 (439)
Q Consensus 106 ~F~i~~~ 112 (439)
.|++..+
T Consensus 193 ~f~~~~~ 199 (434)
T PRK15075 193 PFLIGCL 199 (434)
T ss_pred HHHHHHH
Confidence 9998653
No 70
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.45 E-value=6.4e-11 Score=118.95 Aligned_cols=84 Identities=11% Similarity=0.124 Sum_probs=72.9
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI 109 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i 109 (439)
.+.+.+++.|++.|++.+...+...++..|.+++++ |+++.+++..+..+|..+||.+++++.+..+||+.|++
T Consensus 94 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~ 167 (394)
T PRK11652 94 HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLF 167 (394)
T ss_pred ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence 357788999999999999988988899999988766 88999999999999999999999999998999999998
Q ss_pred HHHHHHHHHH
Q 013611 110 PCAFMVAALV 119 (439)
Q Consensus 110 ~~~~~~i~~~ 119 (439)
.++..++...
T Consensus 168 ~~~~~~~~~~ 177 (394)
T PRK11652 168 LLLLGAGVTF 177 (394)
T ss_pred HHHHHHHHHH
Confidence 7765554433
No 71
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.44 E-value=1.3e-10 Score=117.21 Aligned_cols=85 Identities=13% Similarity=0.165 Sum_probs=72.7
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc-ccchhhhH
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDN-LNWALGFG 108 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~-~g~~~~F~ 108 (439)
.+.+.+++..++.++..+...|...++..+++|++| |+++.++..++.++|..+|+.+++++.+. .|||..|+
T Consensus 92 ~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~ 165 (402)
T PRK11902 92 AALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYL 165 (402)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHH
Confidence 456667777677889999999999999999999887 99999999999999999999999999885 59999999
Q ss_pred HHHHHHHHHHHH
Q 013611 109 IPCAFMVAALVL 120 (439)
Q Consensus 109 i~~~~~~i~~~l 120 (439)
+.++..++....
T Consensus 166 i~a~~~l~~~l~ 177 (402)
T PRK11902 166 LMAGLMLAGALT 177 (402)
T ss_pred HHHHHHHHHHHH
Confidence 988766554443
No 72
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.44 E-value=2.2e-11 Score=126.13 Aligned_cols=78 Identities=13% Similarity=0.163 Sum_probs=71.3
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI 109 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i 109 (439)
.+.+.+++.|++.|++.+...+...+++.+.+|+++ |++++++++.+.++|..+++.+++++.+.++||+.|++
T Consensus 106 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~ 179 (496)
T PRK03893 106 PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFI 179 (496)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 367788999999999999999999999999999876 99999999999999999999999999999999999987
Q ss_pred HHHH
Q 013611 110 PCAF 113 (439)
Q Consensus 110 ~~~~ 113 (439)
..+.
T Consensus 180 ~~~~ 183 (496)
T PRK03893 180 GILP 183 (496)
T ss_pred HHHH
Confidence 5543
No 73
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.44 E-value=1.2e-10 Score=116.88 Aligned_cols=85 Identities=16% Similarity=0.128 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHH
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIP 110 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~ 110 (439)
+...+++.|++.|++.+...+...+++.+.+|+++ |++++++.+...++|..++|.+++++.+..+|++.|++.
T Consensus 90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~ 163 (392)
T PRK10473 90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTM 163 (392)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHH
Confidence 56678889999999999999999999999999877 999999999999999999999999998889999999988
Q ss_pred HHHHHHHHHHH
Q 013611 111 CAFMVAALVLF 121 (439)
Q Consensus 111 ~~~~~i~~~l~ 121 (439)
++..++..++.
T Consensus 164 ~~~~~i~~~~~ 174 (392)
T PRK10473 164 AAMGILVLLLS 174 (392)
T ss_pred HHHHHHHHHHH
Confidence 76665555443
No 74
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.42 E-value=2.5e-10 Score=122.56 Aligned_cols=87 Identities=16% Similarity=0.202 Sum_probs=72.7
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc---------
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDN--------- 100 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~--------- 100 (439)
.+.+.++++|++.|+|.|+..|...+++.+.+|++. |++.+++..++..+|.++++.++.++...
T Consensus 253 ~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~ 326 (742)
T TIGR01299 253 QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGS 326 (742)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccc
Confidence 467889999999999999999999999999999876 99999999999999999999887766543
Q ss_pred ----ccchhhhHHHHHHHHHHHHHHH
Q 013611 101 ----LNWALGFGIPCAFMVAALVLFL 122 (439)
Q Consensus 101 ----~g~~~~F~i~~~~~~i~~~l~~ 122 (439)
.+||+.|++.++..++.+++.+
T Consensus 327 ~~~~~gWR~l~~i~~lp~ll~ll~~~ 352 (742)
T TIGR01299 327 AYQFHSWRVFVIVCAFPCVFAIGALT 352 (742)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHH
Confidence 3688988887766665554443
No 75
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.41 E-value=3e-11 Score=124.70 Aligned_cols=85 Identities=13% Similarity=0.121 Sum_probs=66.5
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh---------c
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD---------N 100 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~---------~ 100 (439)
.+...+++.|++.|++.+...+ ....+++++|+++ |++++++.+...|+|..+++.+.+.+.. .
T Consensus 122 ~s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~------rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~ 194 (476)
T PLN00028 122 SSATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKI------VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSF 194 (476)
T ss_pred cCHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhh------eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence 3566788889999999987654 4567899999877 9999999998889999888877776532 2
Q ss_pred ccchhhhHHHHHHHHHHHHHH
Q 013611 101 LNWALGFGIPCAFMVAALVLF 121 (439)
Q Consensus 101 ~g~~~~F~i~~~~~~i~~~l~ 121 (439)
.|||+.|++.++..++..++.
T Consensus 195 ~gWr~~f~i~g~l~l~~~l~~ 215 (476)
T PLN00028 195 TAWRIAFFVPGLLHIIMGILV 215 (476)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 589999999887666554443
No 76
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.41 E-value=1.9e-11 Score=123.99 Aligned_cols=265 Identities=12% Similarity=0.059 Sum_probs=151.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHh
Q 013611 72 KSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAI 151 (439)
Q Consensus 72 r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 151 (439)
+++.++......++|.++||.++|++.+ .+|++.|++.++..++..++++..+++.++++... +++
T Consensus 139 ~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------ 204 (420)
T PRK09528 139 SGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVA-NAL------------ 204 (420)
T ss_pred ccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhc-cch------------
Confidence 6678899999999999999999999986 58999999888776666555444322211100000 000
Q ss_pred HhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHH
Q 013611 152 KTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQ-YTTFFTKQG 230 (439)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q-~~~~~~~~~ 230 (439)
.++.+...+-+ ..+....+.++.+..........+..+.+ .+..+....
T Consensus 205 ------------~~~~~~~~~~~------------------~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 254 (420)
T PRK09528 205 ------------GANASAVSLKD------------------ALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFF 254 (420)
T ss_pred ------------hcccccccHHH------------------HHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000000 00000011111111111111112222222 222222211
Q ss_pred hhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013611 231 ATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLE 310 (439)
Q Consensus 231 ~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~ 310 (439)
. +...+ ....+.+..++.+...+..++.+++.+ |. ++++.+.++.++.+++..+..+.
T Consensus 255 ~--~~~~~---~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~-------g~~~~~~~~~~l~~~~~~l~~~~------ 312 (420)
T PRK09528 255 A--TPEQG---TRVFGYLNSFQVFLEALIMFFAPFIIN----RI-------GAKNALLLAGTIMAVRIIGSGFA------ 312 (420)
T ss_pred h--ccCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHH----Hh-------CcchhhHHHHHHHHHHHHHHHhc------
Confidence 1 11111 112345566666666666666666544 32 23345667777777776666543
Q ss_pred HHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHH-HHHHhhhhhhhhhHHHhhhh
Q 013611 311 TAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSI-YMSVLGVGGFLSSILVSIIN 389 (439)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl-~~~~~~iG~~ig~~l~~~~~ 389 (439)
.+.++++...++.+++.....+...+++.+..|++.+++..+. +++..++|+.+++.+.|.+.
T Consensus 313 ----------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~ 376 (420)
T PRK09528 313 ----------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLY 376 (420)
T ss_pred ----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHH
Confidence 2456677778888888888777777889999999999988765 77888999999999999886
Q ss_pred ccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhcc
Q 013611 390 EATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKS 434 (439)
Q Consensus 390 ~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~ 434 (439)
+.. ++...|...+++.++..++.+...++
T Consensus 377 ~~~----------------G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 377 DSI----------------GFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred Hhh----------------CchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 421 24567777777777777666655543
No 77
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.36 E-value=4.7e-10 Score=112.59 Aligned_cols=83 Identities=13% Similarity=0.089 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHH
Q 013611 35 FIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFM 114 (439)
Q Consensus 35 ~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~~~~~ 114 (439)
+.....+.++..+...+...++..+..++++ ++.+.+...++..+|.++|..+.+++.+.+|||..|++.++..
T Consensus 100 ~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~ 173 (390)
T TIGR02718 100 AVGLLACASLASATQDIATDGMAAEHFNGRT------LAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVP 173 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 3444455666777777777777777766655 7778888888889999999999999999999999999988776
Q ss_pred HHHHHHHHh
Q 013611 115 VAALVLFLL 123 (439)
Q Consensus 115 ~i~~~l~~~ 123 (439)
++..+..++
T Consensus 174 ~~~~~~~~~ 182 (390)
T TIGR02718 174 LASLVCVLW 182 (390)
T ss_pred HHHHHHHHH
Confidence 665554433
No 78
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.36 E-value=2.1e-10 Score=115.44 Aligned_cols=290 Identities=10% Similarity=0.026 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHH
Q 013611 34 VFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAF 113 (439)
Q Consensus 34 ~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~~~~ 113 (439)
.+.+++++.+++.+...|...++..|.-+ + +.+.++......++|.++||.++|.+.+ ++|++.|++.++.
T Consensus 101 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~ 171 (396)
T TIGR00882 101 GAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGF 171 (396)
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHhhh--h------cccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHH
Confidence 34556777888888888888777655322 1 3457888889999999999999998876 6999999988766
Q ss_pred HHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCCCCch
Q 013611 114 MVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTL 193 (439)
Q Consensus 114 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (439)
.++..++.+...++ +|+++ + ..+ . .+.+++. . ...+.
T Consensus 172 ~~~~~~~~~~~~~~----~~~~~-~-~~~----------~----------~~~~~~~---------------~--~~~~~ 208 (396)
T TIGR00882 172 ALILMLLLMFAKPK----APSSA-T-VAN----------A----------LGANASA---------------F--SLKLA 208 (396)
T ss_pred HHHHHHHHHHhCCC----Cchhh-h-hhc----------c----------cccccCC---------------C--CHHHH
Confidence 66555443332221 11110 0 000 0 0000000 0 00000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh-hcc-cCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhhhc
Q 013611 194 EDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGA-TMD-RTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPIT 271 (439)
Q Consensus 194 ~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~-~~~-~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~~~ 271 (439)
.+....|.++.+... .......+.+....+..... ..+ ... + ....+....+..+...+..+..+++.
T Consensus 209 ~~~l~~~~~~~~~l~---~~~~~~~~~~~~~~~~~y~~~~~~~~~~--~-~~~~g~~~~~~~i~~~~~~~~~g~l~---- 278 (396)
T TIGR00882 209 LELFRQRKFWMFVLY---VVGVACVYDVFDQQFANFFTSFFATPQQ--G-TRVFGYVTTMGELLNALIMFCAPLII---- 278 (396)
T ss_pred HHHHcCCcHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcccccc--c-hHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 011111122222111 22222222222221111111 111 111 1 11123444445455554444444433
Q ss_pred ccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhH
Q 013611 272 RYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQ 351 (439)
Q Consensus 272 ~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~ 351 (439)
+|. ++++.+.+|.++.++++...... .+.+++++..++.+++.........
T Consensus 279 ~r~-------g~~~~l~~~~~l~~l~~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 279 NRI-------GAKNALLIAGTIMSVRIIGSSFA----------------------TTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred HHh-------ccchhHHHHHHHHHHHHHHHHhc----------------------CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 33345677777777766554432 2566677778888988877766666
Q ss_pred HHHHhhcChhhHHHHHHH-HHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHH
Q 013611 352 EFFYDQIPKELKSFGLSI-YMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLY 430 (439)
Q Consensus 352 ~~~~~~aP~~~~g~~~gl-~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~ 430 (439)
+++.+..|++.+++..+. ++....+|+.+++.+.|.+.+. .++...|.+.+++.++..++-.+
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~----------------~G~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS----------------IGFQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh----------------cccHHHHHHHHHHHHHHHHHHHH
Confidence 788888899999887766 6789999999999999988743 23466788878777777666443
No 79
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.35 E-value=1.8e-12 Score=127.57 Aligned_cols=88 Identities=20% Similarity=0.322 Sum_probs=79.7
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc-chhhhH
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLN-WALGFG 108 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g-~~~~F~ 108 (439)
..++.+.+.|.++|+|++.+.|...++++|.||+++ |++.++++|+++++|..+|.+++.++....+ |||+|.
T Consensus 119 ~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~ 192 (493)
T KOG1330|consen 119 NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFR 192 (493)
T ss_pred HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEE
Confidence 578899999999999999999999999999999988 9999999999999999999999999988766 999999
Q ss_pred HHHHHHHHHHHHHHh
Q 013611 109 IPCAFMVAALVLFLL 123 (439)
Q Consensus 109 i~~~~~~i~~~l~~~ 123 (439)
+.++.+++..++.++
T Consensus 193 ~~avl~vi~~~L~~~ 207 (493)
T KOG1330|consen 193 GSAVLGVIVGLLVFL 207 (493)
T ss_pred eehHHHHHHHHHHHh
Confidence 988877766654433
No 80
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.34 E-value=4.2e-10 Score=111.39 Aligned_cols=260 Identities=8% Similarity=0.044 Sum_probs=151.3
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc--cchhhhH
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNL--NWALGFG 108 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~--g~~~~F~ 108 (439)
+...+.+.|++.|+|.|...+...+...+.++ ++ |++++++++.+.++|..+|+.+++.+.+.. +||+.|.
T Consensus 86 ~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~ 158 (355)
T TIGR00896 86 GTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALA 158 (355)
T ss_pred cHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 45677899999999999988888888888886 35 899999999999999999999999988764 3999998
Q ss_pred HHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCC
Q 013611 109 IPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDG 188 (439)
Q Consensus 109 i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (439)
+.++..++....+.. +.+++++++ ++. .. ...
T Consensus 159 ~~~~~~~~~~~~~~~---~~~~~~~~~--~~~---------------------------~~---------------~~~- 190 (355)
T TIGR00896 159 WWALPALLALLAWIP---QVRRRVAAN--QTT---------------------------TR---------------LTP- 190 (355)
T ss_pred HHHHHHHHHHHHHhh---hhccccCCC--CCC---------------------------CC---------------CCC-
Confidence 766544443332221 111111110 000 00 000
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhh
Q 013611 189 KLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFV 268 (439)
Q Consensus 189 ~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~ 268 (439)
.+...+ +..... .+........+....+..+...+ +.+. .....+.+..+..+..++..++.+++.+
T Consensus 191 ----~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~lp~~~~--~~g~---~~~~~g~~~~~~~~~~i~~~~~~g~l~d 257 (355)
T TIGR00896 191 ----VRIWRS-PLAWQV---TVFFGLQSGLYYSLIGWLPAILI--SHGA---SAATAGSLLALMQLAQAASALLIPALAR 257 (355)
T ss_pred ----chhhcC-HhHHHH---HHHHHHHHHHHHHHHHHHHHHHH--HcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 000111 111111 11111122222222222222221 1111 1222345556666666666666666543
Q ss_pred hhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 013611 269 PITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIV 348 (439)
Q Consensus 269 ~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~ 348 (439)
|.. ..++.+.++..+.+++...+.+... .+.+ ...++.|++++...+
T Consensus 258 ----r~~------~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~---~~~~l~g~~~g~~~~ 304 (355)
T TIGR00896 258 ----RVK------DQRGIVAVLAVLQLVGLCGLLFAPM--------------------HGLW---AWALVLGLGQGGAFP 304 (355)
T ss_pred ----hhc------cchHHHHHHHHHHHHHHHHHHHhhh--------------------hHHH---HHHHHHHHhhhhHhH
Confidence 321 1123345666666666655554321 1111 134677999988887
Q ss_pred hhHHHHHhh-cChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhcc
Q 013611 349 GLQEFFYDQ-IPKELKSFGLSIYMSVLGVGGFLSSILVSIINEA 391 (439)
Q Consensus 349 ~~~~~~~~~-aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~ 391 (439)
.....+... .|++.+|.++|+.+....+|+.++|.+.|.+.+.
T Consensus 305 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~ 348 (355)
T TIGR00896 305 LALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDI 348 (355)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666544 4578889999999999999999999999988754
No 81
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.33 E-value=9.6e-10 Score=107.03 Aligned_cols=83 Identities=8% Similarity=-0.030 Sum_probs=71.6
Q ss_pred CCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc-------
Q 013611 28 HHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDN------- 100 (439)
Q Consensus 28 ~~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~------- 100 (439)
...+.+.+.++.+++|.|.+..++..++++++..++|+ +++.+++......+|.++||++++.+...
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~ 79 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSM 79 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhh
Confidence 34578999999999999999999999999999999887 88999999999999999999999987732
Q ss_pred ---------ccchhhhHHHHHHHHH
Q 013611 101 ---------LNWALGFGIPCAFMVA 116 (439)
Q Consensus 101 ---------~g~~~~F~i~~~~~~i 116 (439)
..|++.|++.+....+
T Consensus 80 ~~~~~~~~~~~~~~~yl~ia~~~~~ 104 (310)
T TIGR01272 80 QVATANAEAAKVHTPYLLLAGALAV 104 (310)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4789999865544333
No 82
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=7.6e-11 Score=114.02 Aligned_cols=96 Identities=16% Similarity=0.021 Sum_probs=85.9
Q ss_pred CCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhh
Q 013611 28 HHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGF 107 (439)
Q Consensus 28 ~~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F 107 (439)
...+.++++++|.++|+|.+....+..++++|.||+++ +|++++++.--++.+|-++||..||.+.|..|++..|
T Consensus 155 fg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~-----er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPF 229 (464)
T KOG3764|consen 155 FGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN-----ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPF 229 (464)
T ss_pred HcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch-----hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcH
Confidence 34577899999999999999999999999999999875 3999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcce
Q 013611 108 GIPCAFMVAALVLFLLGTKTY 128 (439)
Q Consensus 108 ~i~~~~~~i~~~l~~~~~~~~ 128 (439)
++.+++.++...+-++..+..
T Consensus 230 lVL~~v~Lld~~L~l~vi~p~ 250 (464)
T KOG3764|consen 230 LVLAIVLLLDGALQLLVIEPT 250 (464)
T ss_pred HHHHHHHHHHHHHHHheeCcc
Confidence 999988888777665544433
No 83
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.29 E-value=1.6e-09 Score=110.21 Aligned_cols=87 Identities=14% Similarity=0.002 Sum_probs=66.7
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhh-----h-----
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQ-----D----- 99 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~-----~----- 99 (439)
.+...+++.|++.|++ |...+.....+.++||+++ |+++++++....|+|..+++.+++.+. .
T Consensus 126 ~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~ 198 (462)
T PRK15034 126 TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVN 198 (462)
T ss_pred CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4688899999999998 6678889999999999987 999999998888888887777766543 2
Q ss_pred --------cccchhhhHHHHHHHHHHHHHHHh
Q 013611 100 --------NLNWALGFGIPCAFMVAALVLFLL 123 (439)
Q Consensus 100 --------~~g~~~~F~i~~~~~~i~~~l~~~ 123 (439)
..+||.++++-.+..++..+++++
T Consensus 199 ~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~ 230 (462)
T PRK15034 199 GVPQADGSVMSLANAAWIWVPLLAIATIAAWS 230 (462)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234666666666555555555544
No 84
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.28 E-value=7.5e-10 Score=112.40 Aligned_cols=150 Identities=15% Similarity=0.154 Sum_probs=100.4
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611 246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI 325 (439)
Q Consensus 246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (439)
+....++.+..++...+.+++. +|. +.++.+.++.++.++++.+...... .
T Consensus 254 g~~~~~~~i~~i~~~~~~g~l~----dr~-------g~r~~l~~~~~~~~v~~~l~~~~~~------------------~ 304 (418)
T TIGR00889 254 SIWMSLSQFSEIFFILTIPFFL----KRF-------GIKKVMLLSLVAWALRFGFFAYGDP------------------E 304 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHh-------CcHHHHHHHHHHHHHHHHHHHHcCc------------------c
Confidence 3444555555555555555544 332 3445667777777776655544210 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHH-HHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611 326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYM-SVLGVGGFLSSILVSIINEATSRDGGDSWFADN 404 (439)
Q Consensus 326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~-~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~ 404 (439)
..+.+.+++..++.++++++..+....++.+..|++.||+++|+.+ ...++|+.+|+.+.|.+.+....++.
T Consensus 305 ~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~------- 377 (418)
T TIGR00889 305 YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGT------- 377 (418)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccC-------
Confidence 0123445667889999999988888889999999999999999997 67899999999999988753211110
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhcc
Q 013611 405 LNRAHLDYFYWLLAALSAGGLLAFLYFAKS 434 (439)
Q Consensus 405 l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~ 434 (439)
.++...|...+++.+++.++++++.++
T Consensus 378 ---~~~~~~f~~~~~~~~i~~~l~~~~~~~ 404 (418)
T TIGR00889 378 ---FDWQTMWLFFAGYIAILAVLFMIFFKY 404 (418)
T ss_pred ---CchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 134567777777777777777766653
No 85
>PRK10133 L-fucose transporter; Provisional
Probab=99.27 E-value=2.5e-09 Score=109.19 Aligned_cols=64 Identities=17% Similarity=0.152 Sum_probs=54.9
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 013611 29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQ 98 (439)
Q Consensus 29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~ 98 (439)
..+...++++|+++|+|.|...+..++++.|..++++ |.+.++.+.....+|..+|+.+++.+.
T Consensus 114 a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 114 IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999998755544 666789999999999999999988654
No 86
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.26 E-value=3.5e-09 Score=110.13 Aligned_cols=83 Identities=14% Similarity=0.282 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh-----------
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD----------- 99 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~----------- 99 (439)
+...++++|++.|+|.|+..|...+++.+.+|+++ |+++.++.+...++|.++|+.++.++..
T Consensus 114 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~ 187 (502)
T TIGR00887 114 VMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAAD 187 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 36789999999999999999999999999999988 9999999999999999999988876532
Q ss_pred ------------cccchhhhHHHHHHHHHHHH
Q 013611 100 ------------NLNWALGFGIPCAFMVAALV 119 (439)
Q Consensus 100 ------------~~g~~~~F~i~~~~~~i~~~ 119 (439)
..+||+.|.+.++..++..+
T Consensus 188 ~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~ 219 (502)
T TIGR00887 188 EASCTGSCVPAVDYMWRILIGFGAVPALLALY 219 (502)
T ss_pred cccccccccchhcccHHHHHHHHHHHHHHHHH
Confidence 24799999877755544433
No 87
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.25 E-value=8.2e-09 Score=105.58 Aligned_cols=333 Identities=12% Similarity=0.020 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHh--hhcc--------
Q 013611 32 IIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYI--QDNL-------- 101 (439)
Q Consensus 32 ~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l--~~~~-------- 101 (439)
...++++..+.-++....++...++++|.+|+++.+ ++++++++....++|..+|+.++++. .+.+
T Consensus 114 i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~ 189 (477)
T TIGR01301 114 IIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEAC 189 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccc
Confidence 355666667777888889999999999999987622 46899999999999999999999975 2211
Q ss_pred -----cchhhhHHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhh
Q 013611 102 -----NWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKA 176 (439)
Q Consensus 102 -----g~~~~F~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (439)
+.+..|.+.++.++++..+..+..|+....++++ .+..+ .++.+. + +..
T Consensus 190 ~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~--~~~~~---------------------~~~~~~-~--~~~ 243 (477)
T TIGR01301 190 GVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDD--FINSE---------------------AAPPSK-H--GEE 243 (477)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCcccc--chhhh---------------------cccccc-c--chh
Confidence 6788999999888888877665444432111110 00000 000000 0 000
Q ss_pred hhcCCCCCCCCCCCCchhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhh---hHHHHHHhhc-ccCCCCCcccc---chhh
Q 013611 177 LLATPDVSLEDGKLCTLEDVEEAKALL-RLIPIWATCLVYAIVFAQYT---TFFTKQGATM-DRTITRSIKIP---AASL 248 (439)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~v~~~k~~~-~~l~~~~~~~~~~~~~~q~~---~~~~~~~~~~-~~~~g~g~~~~---~~~~ 248 (439)
..+ .+-....|.+. .+..+++.+..-|+.++.+. +.+.-+..+- +......++-. ..+.
T Consensus 244 ------------~~~-~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~ 310 (477)
T TIGR01301 244 ------------AFF-GELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFG 310 (477)
T ss_pred ------------hhH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHH
Confidence 000 00011111110 11223334444555444433 3332221111 00000000000 1122
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHH-hHHHHHHHHHHHHHHHHHHHH---HHHHhhhCCCCCCCCC
Q 013611 249 QLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRI-GAGMLLSSISMVVAALVEIKR---LETAKEYGLIDKPNVT 324 (439)
Q Consensus 249 ~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i-~iG~~l~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 324 (439)
..++.+...+. ..++.++.++. +.++++ .++.++.++++....+..... ++.+..+... .+
T Consensus 311 l~~~s~~~~i~----s~~l~~l~~~~-------g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~-~~--- 375 (477)
T TIGR01301 311 LMLNSVVLGIT----SIGMEKLCRGW-------GAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESL-PP--- 375 (477)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHh-------ccchhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccc-Cc---
Confidence 33444443332 33333333332 222333 677788888887776554200 0000000001 00
Q ss_pred Ccch-HHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCh--hhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCC
Q 013611 325 IPTS-VWWLIPQYLLCGIADVFTIVGLQEFFYDQIPK--ELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWF 401 (439)
Q Consensus 325 ~~~~-~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~--~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~ 401 (439)
+.. .+..+....+.|+........-++.+.+..|+ +..|.+||+.|.+..+.+.+.....|.+.+...
T Consensus 376 -~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g-------- 446 (477)
T TIGR01301 376 -PTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFG-------- 446 (477)
T ss_pred -chhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcC--------
Confidence 112 25566667788888887754444788899995 566999999999999999999988887654332
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHHHHHHHhccCcc
Q 013611 402 ADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNR 437 (439)
Q Consensus 402 ~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~~~ 437 (439)
++....+.+-++.++++++..++..+|-+.
T Consensus 447 ------~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 447 ------GGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred ------CCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 223446777778888888888887777654
No 88
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.24 E-value=2.4e-09 Score=108.94 Aligned_cols=312 Identities=12% Similarity=0.125 Sum_probs=185.1
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc-------cc
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNL-------NW 103 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~-------g~ 103 (439)
....+.+...+..++...+.....++..|..++++ ||.+..++...+.++|.++...+.+.+.+.. +|
T Consensus 102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~-----~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~ 176 (428)
T PF13347_consen 102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD-----ERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGY 176 (428)
T ss_pred HHHHHHHHHHHHHHhhhhccCchhhcCccccccHh-----hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHH
Confidence 34456777777899999999999999999998754 2999999999999999987777776655322 68
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCC
Q 013611 104 ALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDV 183 (439)
Q Consensus 104 ~~~F~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (439)
++.+.+.++..++...+..+..|+-..+.+++ + +..++.+..
T Consensus 177 ~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~--~-----------------------------~~~~~~~~~------- 218 (428)
T PF13347_consen 177 RWMALVLAIVGLVFFLITFFFVKERSVEVTEQ--E-----------------------------KKISLRDSL------- 218 (428)
T ss_pred HHHHHHHHHHHHHHhhhhhheeeecccccccc--c-----------------------------cccccccch-------
Confidence 88888888777776666655555411111111 0 000000000
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhh
Q 013611 184 SLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIY 263 (439)
Q Consensus 184 ~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~ 263 (439)
.+..+.|.+.. ++......+.......+......++. ++ . +-..+.+..+..+..++..|+.
T Consensus 219 ----------~~~~~nr~~~~---l~~~~~~~~~~~~~~~~~~~y~~~~v---l~-~-~~~~~~~~~~~~~~~~v~~~~~ 280 (428)
T PF13347_consen 219 ----------RSLFRNRPFRI---LLLAFFLQWLAFALMNTFLPYYFTYV---LG-N-EGLISIFMLIFFVASIVGSPLW 280 (428)
T ss_pred ----------hhhcccchHHH---HHHHHHHHHhhhhhhhhHHHHHHHHH---hc-C-chhhHHHHHHHHHHHHHHHHHH
Confidence 00111122222 22222333333332222222222111 11 0 1112334445555566666666
Q ss_pred hhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHH
Q 013611 264 DCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIAD 343 (439)
Q Consensus 264 ~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige 343 (439)
.++..++ ++++.+.+|.++.+++..+..+... .+.++..+..++.|++.
T Consensus 281 ~~l~~r~-----------gk~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~i~~~l~gi~~ 329 (428)
T PF13347_consen 281 GRLSKRF-----------GKKKVYIIGLLLAALGFLLLFFLGP--------------------GSPWLVLILFILAGIGY 329 (428)
T ss_pred HHHHHHc-----------cceeehhhhHHHHHHHHHHHHHHHh--------------------hhHHHHHHHHHHhHhhh
Confidence 6654333 3334667788888888777766531 36778888889999999
Q ss_pred HHHhhhhHHHHHhhcC-------hhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHH
Q 013611 344 VFTIVGLQEFFYDQIP-------KELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWL 416 (439)
Q Consensus 344 ~l~~~~~~~~~~~~aP-------~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~ 416 (439)
+...+...++..+.++ ++..|..+|++++...+|..+++.+.+.+.....++++.. +-++.........
T Consensus 330 ~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~~~~~----~q~~~~~~~i~~~ 405 (428)
T PF13347_consen 330 GAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYDANAA----VQSASALSGIRIL 405 (428)
T ss_pred cccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcCCCcC----cCCHHHHHHHHHH
Confidence 9887666677776665 4568999999999999999999999998876655544320 1112222333334
Q ss_pred HHHHHHHHHHHHHHHhccCccC
Q 013611 417 LAALSAGGLLAFLYFAKSYNRE 438 (439)
Q Consensus 417 ~~~l~~l~~~i~~~~~~~~~~~ 438 (439)
.+.+-++..++-....++||-+
T Consensus 406 ~~~~p~~~~~~~~i~~~~y~l~ 427 (428)
T PF13347_consen 406 FSIVPAIFLLLAIIFMRFYPLT 427 (428)
T ss_pred HHHHHHHHHHHHHHHHhhccCC
Confidence 4444444444555666666543
No 89
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.24 E-value=3.7e-09 Score=112.59 Aligned_cols=87 Identities=18% Similarity=0.235 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc---------
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNL--------- 101 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~--------- 101 (439)
.+..++++|++.|+|.+...|...+++.|.+|+++ |++++++++.+.++|+++|+++++++.+.+
T Consensus 171 ~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~ 244 (633)
T TIGR00805 171 MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTE 244 (633)
T ss_pred eehhhHHHHHHHhccCCcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCC
Confidence 46678899999999999999999999999999988 999999999999999999999999987643
Q ss_pred -------------cchhhhHHHHHHHHHHHHHHHh
Q 013611 102 -------------NWALGFGIPCAFMVAALVLFLL 123 (439)
Q Consensus 102 -------------g~~~~F~i~~~~~~i~~~l~~~ 123 (439)
+|+..|++.++..++..+.+++
T Consensus 245 ~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~ 279 (633)
T TIGR00805 245 DVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFF 279 (633)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2788899888776665544443
No 90
>PRK09848 glucuronide transporter; Provisional
Probab=99.22 E-value=1.2e-08 Score=104.40 Aligned_cols=94 Identities=12% Similarity=0.064 Sum_probs=72.4
Q ss_pred CchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChh
Q 013611 282 TMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE 361 (439)
Q Consensus 282 ~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~ 361 (439)
+.++.+.+|.++.++++..+.+.. ..+.|+..+..++.++|+++..+...+...+.+|.+
T Consensus 292 g~~~~~~~g~~~~~i~~~~~~~~~--------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~ 351 (448)
T PRK09848 292 GKKNTFLIGALLGTCGYLLFFWVS--------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYG 351 (448)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcC--------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 455677788888777776655321 134566667778899999999888888888888765
Q ss_pred -------hHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCC
Q 013611 362 -------LKSFGLSIYMSVLGVGGFLSSILVSIINEATSRD 395 (439)
Q Consensus 362 -------~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~ 395 (439)
.+|.++|++++.+.+|..+|+.+.+.+.+...++
T Consensus 352 ~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~ 392 (448)
T PRK09848 352 EYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYI 392 (448)
T ss_pred HHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4699999999999999999999999876555443
No 91
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.20 E-value=4e-09 Score=106.81 Aligned_cols=86 Identities=14% Similarity=0.098 Sum_probs=71.7
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh---------
Q 013611 29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD--------- 99 (439)
Q Consensus 29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~--------- 99 (439)
..+.+.++++|++.|+|.|...+..++.+.+..|+++ |++..++.....++|..+||.+++.+..
T Consensus 91 ~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~ 164 (410)
T TIGR00885 91 IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD 164 (410)
T ss_pred hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence 3467889999999999999999999999999988766 8889999999999999999999998742
Q ss_pred -----------------cccchhhhHHHHHHHHHHHHH
Q 013611 100 -----------------NLNWALGFGIPCAFMVAALVL 120 (439)
Q Consensus 100 -----------------~~g~~~~F~i~~~~~~i~~~l 120 (439)
..+||+.|++.++..++..++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 246999998877655544433
No 92
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.18 E-value=1.3e-09 Score=107.82 Aligned_cols=79 Identities=14% Similarity=0.209 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh----------c
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD----------N 100 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~----------~ 100 (439)
+.+.++++|++.|++.+.. +...++++|++|+++ |+++.+++....++|..+|+.+++.+.. .
T Consensus 90 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~ 162 (366)
T TIGR00886 90 SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH 162 (366)
T ss_pred hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 6778899999999997765 557889999999877 9999999999999999999888887665 2
Q ss_pred ccchhhh-HHHHHHHHH
Q 013611 101 LNWALGF-GIPCAFMVA 116 (439)
Q Consensus 101 ~g~~~~F-~i~~~~~~i 116 (439)
.+||+.| ++.++...+
T Consensus 163 ~~w~~~~~~~~~~~~~~ 179 (366)
T TIGR00886 163 LAWGWAFVIVPAGILLL 179 (366)
T ss_pred ccccchhHHHHHHHHHH
Confidence 4899999 444444333
No 93
>PRK09669 putative symporter YagG; Provisional
Probab=99.16 E-value=2.3e-08 Score=102.30 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcC-------hhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCC
Q 013611 328 SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIP-------KELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRD 395 (439)
Q Consensus 328 ~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP-------~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~ 395 (439)
+.+.+++..++.++|++...+...+++.+.++ ++..|...|.+.+...+|..+|+.+.+.+.+...++
T Consensus 318 ~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 318 NVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV 392 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 45556666788999999988888888888775 455678899999999999999999999887766654
No 94
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=99.15 E-value=3.6e-08 Score=96.86 Aligned_cols=307 Identities=13% Similarity=0.142 Sum_probs=181.6
Q ss_pred CCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhh
Q 013611 27 PHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALG 106 (439)
Q Consensus 27 ~~~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~ 106 (439)
+...........-.++|+|.+.......++.+|..||++ |.++-++.|...-+|..++..+.|.+-+.++..-.
T Consensus 84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL 157 (403)
T PF03209_consen 84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERL 157 (403)
T ss_pred ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHH
Confidence 344455566667778999999999999999999999988 99999999999999999999999988777766544
Q ss_pred hHHH----HHHHHHHHHHHHhcCc-ceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCC
Q 013611 107 FGIP----CAFMVAALVLFLLGTK-TYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATP 181 (439)
Q Consensus 107 F~i~----~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (439)
.-+. .+...+.++- +++.+ +.....+.. .++...+.+.......
T Consensus 158 ~~v~~~~a~i~~~l~~ia-~wg~E~r~~~~~~~~------------------------------~~~~~~f~~a~~~~~~ 206 (403)
T PF03209_consen 158 IQVIQGVALIALLLNLIA-LWGQEPRRSRRAAAA------------------------------ERPRPPFREAWRQVWA 206 (403)
T ss_pred HHHHHHHHHHHHHHHHHH-HHhcccCCcccccCC------------------------------CCCCccHHHHHHHHHh
Confidence 4332 2222222222 22222 111111000 0000011111110000
Q ss_pred CCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccch---hhhhhHHHHHHH
Q 013611 182 DVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAA---SLQLFIGIGIIT 258 (439)
Q Consensus 182 ~~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~---~~~~in~~~iii 258 (439)
+ .+.++++ ..+++....|.+ |..-++..-|.-+.++++ .++.+.....++
T Consensus 207 -----------~---~~a~~f~--~fl~l~t~a~~~-----------QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~ 259 (403)
T PF03209_consen 207 -----------S---PQARRFF--VFLFLGTLAFFM-----------QDVILEPYGGEVFGMSVGETTRLTAFWGGGTLL 259 (403)
T ss_pred -----------C---CChhHHH--HHHHHHHHHHHh-----------hHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHH
Confidence 0 0111121 112223333322 111111110001234443 344555555666
Q ss_pred HHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHH
Q 013611 259 FIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLL 338 (439)
Q Consensus 259 ~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 338 (439)
...+.+++..| + .++.+...+|..+.++++........ .-+.|.+.+..++
T Consensus 260 G~~~~g~~l~~---~-------~~~~~~a~~G~~~~~~~f~lii~a~~-------------------~~~~~~~~~~~~l 310 (403)
T PF03209_consen 260 GMLLAGFLLSR---R-------LGKKRTAALGCLLGALAFALIILAGP-------------------LGSPWLFRPGVFL 310 (403)
T ss_pred HHHHHHHHhcC---C-------CCchHHHHHHHHHHHHHHHHHHHHHh-------------------cccchHHHHHHHH
Confidence 66566665432 2 23344455777777777766665532 1246667888999
Q ss_pred HHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHH
Q 013611 339 CGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLA 418 (439)
Q Consensus 339 ~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~ 418 (439)
.|+|.++..+...+..++.++++..|+.+|.|...++++..+|..+++...+... ++..+-....|...|.+=+
T Consensus 311 ~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~------~~~~~~~~~aY~~VF~lEa 384 (403)
T PF03209_consen 311 LGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVR------ALFGNSPALAYGVVFALEA 384 (403)
T ss_pred HHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhccCCcchHHHHHHHHHH
Confidence 9999999999988999999999999999999999999999999999888865532 2221101124556676666
Q ss_pred HHHHHHHHHHHHHh
Q 013611 419 ALSAGGLLAFLYFA 432 (439)
Q Consensus 419 ~l~~l~~~i~~~~~ 432 (439)
.+.+++.++..-+.
T Consensus 385 ~ll~~a~~ll~~l~ 398 (403)
T PF03209_consen 385 VLLLAALVLLGRLD 398 (403)
T ss_pred HHHHHHHHHHHHhh
Confidence 66666655544443
No 95
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.14 E-value=5.6e-09 Score=102.27 Aligned_cols=293 Identities=13% Similarity=0.085 Sum_probs=179.2
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc---chhhh
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLN---WALGF 107 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g---~~~~F 107 (439)
+.+.+.+..++.|++.|. .....+.++.+||+++ ++.+.+++. .-|+|..+...++|++....+ ||...
T Consensus 104 ~~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~~~------qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~ 175 (417)
T COG2223 104 STWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKEK------QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVA 175 (417)
T ss_pred chHHHHHHHHHHhcccce-ehcccccccccCChhh------hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 336788888999998776 5667788999999988 999999999 999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCC
Q 013611 108 GIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLED 187 (439)
Q Consensus 108 ~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (439)
.+..+.+++..+.+++..+...+.+++. ++... . .
T Consensus 176 ~i~~~~l~v~~v~~~~~~~d~p~~r~~~--~~~~~-------------------------~---~--------------- 210 (417)
T COG2223 176 GIYVVALAIAAVLAWLGMNDVPEHRASV--KPQLP-------------------------A---Q--------------- 210 (417)
T ss_pred HHHHHHHHHHHHHHHHHhCCChhhhccc--cccch-------------------------h---H---------------
Confidence 9988888887777666444322111111 10000 0 0
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhh
Q 013611 188 GKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQY-TTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCI 266 (439)
Q Consensus 188 ~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~ 266 (439)
.+.+...+....+..+...+..-++.+.-. +..+.. +.| -....++.+....++.-.+..|+.+++
T Consensus 211 -----~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~-------~fg-~~~~~Ag~~a~~f~~~g~l~Rp~GG~L 277 (417)
T COG2223 211 -----LKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVT-------QFG-LSPVTAGLIAFLFPLIGALARPLGGWL 277 (417)
T ss_pred -----HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcC-CChhhHHHHHHHHHHHHHHHHhccchh
Confidence 011111222333333333333333322221 122222 221 012334566666777777777777777
Q ss_pred hhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchH----HHHHHHHHHHHHH
Q 013611 267 FVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSV----WWLIPQYLLCGIA 342 (439)
Q Consensus 267 ~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~l~gig 342 (439)
.|++. ..+.+.+.+..++++.......... ++ ...+. ...+...++.|+|
T Consensus 278 sDR~G-----------g~rv~~~~f~~~~~~~~~l~~~~~~-------~~--------~~~~~~~~~~~~l~l~~~~G~G 331 (417)
T COG2223 278 SDRIG-----------GRRVTLAVFVGMALAAALLSLFLTG-------FG--------HGGSFVVFVAVFLALFVFAGLG 331 (417)
T ss_pred hhhcc-----------chhHHHHHHHHHHHHHHHHHccccc-------cc--------cCcchHHHHHHHHHHHHHhccC
Confidence 65443 3345566666666666555544210 00 01122 2244455666666
Q ss_pred HHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHH
Q 013611 343 DVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSA 422 (439)
Q Consensus 343 e~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~ 422 (439)
++-+.- .+-..- +++.|.+.|+-..+.++|+..=|...+...+.+ +.+...|+++....+
T Consensus 332 nGsvfk----~Ip~if-~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~t---------------g~~~~~f~~~~~~~~ 391 (417)
T COG2223 332 NGSVFK----MIPVIF-PKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLT---------------GSYTGAFMLLLAFYL 391 (417)
T ss_pred cchhee----echHHH-HhhhhHHHHHHHHhccccccchhHHHHHHHHhc---------------ccHHHHHHHHHHHHH
Confidence 665421 111112 237889999999999999988888888776544 345667888888888
Q ss_pred HHHHHHHHHhccC
Q 013611 423 GGLLAFLYFAKSY 435 (439)
Q Consensus 423 l~~~i~~~~~~~~ 435 (439)
++.+..+...+|-
T Consensus 392 ~a~v~~~~~y~r~ 404 (417)
T COG2223 392 VALVLTWALYARR 404 (417)
T ss_pred HHHHHHHHHHHhc
Confidence 8888877776654
No 96
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.09 E-value=9.1e-09 Score=105.97 Aligned_cols=293 Identities=13% Similarity=0.151 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHH
Q 013611 32 IIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPC 111 (439)
Q Consensus 32 ~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~~ 111 (439)
.....+.+++.+++.+...+...++..+..+ ++++ .+....++.|...++|.++|+.++|++.+.++|+..|++.+
T Consensus 120 ~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~---~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a 195 (468)
T TIGR00788 120 AKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS---AGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITA 195 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---cCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 3444457889999999999999999999999 4322 24557788899999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCCCC
Q 013611 112 AFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLC 191 (439)
Q Consensus 112 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (439)
+..++.....++.+++.....|+.+++... .+ ..... +..+..
T Consensus 196 ~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~---~~---~~~~~----------------~~~~~~--------------- 238 (468)
T TIGR00788 196 ALLLLQLFVSNLSKERRAFVRPRIGTYLEM---NM---ALLTL----------------GVLANV--------------- 238 (468)
T ss_pred HHHHHHHHHHHhcccccccccccccccchh---hh---hhhhh----------------hHHHHH---------------
Confidence 776666443333222100011110000000 00 00000 000000
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhhh
Q 013611 192 TLEDVEEAKALLRLIPIWATCLVYAIV-FAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPI 270 (439)
Q Consensus 192 ~~~~v~~~k~~~~~l~~~~~~~~~~~~-~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~~ 270 (439)
.+...+.++.++...++... .+... |...++.............| ......+.+....++..++...+.+++
T Consensus 239 -~~~~~~l~~~l~~~~i~~~l-~fifl~~~~~~~~~~~~f~~~~~~lG-~s~~~~G~~~~~~~v~~i~g~~~~~~~---- 311 (468)
T TIGR00788 239 -KVQILGLRGAIQLLEIAKPL-IFIFLSYANLPGASGSVFCATTQCLP-GGPSFSGMSKVVGNLGSLCGVGGYDRF---- 311 (468)
T ss_pred -HHHHHHHHHHHhcHHHHHHH-HHHHHHHhhcCCCCceeEEEEcccCC-CCcchhhhHHHHHHHHHHHHHHHHHHH----
Confidence 00000111111111111000 01111 12222110000000001222 112223444445555555554444443
Q ss_pred cccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhh
Q 013611 271 TRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGL 350 (439)
Q Consensus 271 ~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~ 350 (439)
.+| .+.++-+.++.++.+++......... +.+ ...+ ..+.++.....++.+++.++...+.
T Consensus 312 ~~~-------~~~r~~l~~~~~l~~~~~~~~~~l~~-~~~--~~~g---------i~~~~~~~~~~~l~~~~~g~~~~~~ 372 (468)
T TIGR00788 312 LKT-------FPYRLLFGVTTLLYTLSSLFDLILVK-RWN--LAFG---------ISDEVFVLGDSIIAEVLAQLKFMPF 372 (468)
T ss_pred Hhh-------CCHHHHHHHHHHHHHHHHhCceeeee-ccc--cccC---------CCCeeeeeehhHHHHHHHHHHHccH
Confidence 233 35566667777777666544321100 000 0000 0123345556678888888888888
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhcc
Q 013611 351 QEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEA 391 (439)
Q Consensus 351 ~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~ 391 (439)
..++.+.+|++.+|+..|+....+++|+.+++.+++.+.+.
T Consensus 373 ~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~ 413 (468)
T TIGR00788 373 LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMET 413 (468)
T ss_pred HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999988888654
No 97
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.07 E-value=3.8e-08 Score=101.58 Aligned_cols=278 Identities=10% Similarity=0.065 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh-------cccch
Q 013611 32 IIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD-------NLNWA 104 (439)
Q Consensus 32 ~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~-------~~g~~ 104 (439)
...+++...+..++...+.....++..+..++.+ ||.+.+++.....++|..+++.++..+.. ..+|+
T Consensus 106 ~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~-----eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~ 180 (473)
T PRK10429 106 YVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKR-----EREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQ 180 (473)
T ss_pred HHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence 4445555566788888899999999999886533 29999999888889887777665543322 13566
Q ss_pred hhhHHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCC
Q 013611 105 LGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVS 184 (439)
Q Consensus 105 ~~F~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (439)
+...+.++...+...+.++..|+-.. +++.+ + +..+..++.|..
T Consensus 181 ~~~~i~~~~~~~~~~~~~~~~~e~~~-~~~~~-~--------------------------~~~~~~~~~~~~-------- 224 (473)
T PRK10429 181 MFTLVLIAFFIVSTIITLRNVHEVYS-SDNQV-S--------------------------AEGSHLTLKDIV-------- 224 (473)
T ss_pred HHHHHHHHHHHHHHHHHHcCceecCC-ccccc-c--------------------------ccccCCCHHHHH--------
Confidence 66666665555544444433332110 00000 0 000000010000
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhh
Q 013611 185 LEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYD 264 (439)
Q Consensus 185 ~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~ 264 (439)
+.+.+.|.++.+ ......++... +....+... ...-..+ . .-..+.+..++.+..++..|+..
T Consensus 225 ---------~~~~~n~~~~~l---l~~~~~~~~~~-~~~~~~~~y--~~~y~~~-~-~~~~~~~~~~~~i~~ii~~~~~~ 287 (473)
T PRK10429 225 ---------ALIYKNDQLSCL---LGMALAYNIAS-NIINGFAIY--YFTYVIG-D-ADLFPYYLSYAGAANLVTLILFP 287 (473)
T ss_pred ---------HHHhcCHHHHHH---HHHHHHHHHHH-HHHhhheee--EEEEECC-C-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111222222 12222222222 212111111 1111111 1 11122344455555666666655
Q ss_pred hhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHH
Q 013611 265 CIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADV 344 (439)
Q Consensus 265 ~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~ 344 (439)
++. +|. ++++.+.++.++..++.+........ .+.+.+++++..++.+++.+
T Consensus 288 ~l~----~r~-------gkk~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~i~~~l~g~~~~ 339 (473)
T PRK10429 288 RLV----KSL-------SRRILWAGASIFPVLSCGVLLLMGLA-----------------APHNALLIVIAGILLNIGTA 339 (473)
T ss_pred HHH----HHc-------CcHHHHHHHHHHHHHHHHHHHHHhcc-----------------CchhHHHHHHHHHHHHHHHH
Confidence 543 332 33445556666555554443322100 01235556667788899999
Q ss_pred HHhhhhHHHHHhhcC-------hhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCC
Q 013611 345 FTIVGLQEFFYDQIP-------KELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRD 395 (439)
Q Consensus 345 l~~~~~~~~~~~~aP-------~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~ 395 (439)
...+...++..+.+| ++..|.+.|.+.+..-+|..+|+.+.|.+.+...++
T Consensus 340 ~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy~ 397 (473)
T PRK10429 340 LFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGYV 397 (473)
T ss_pred HHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 988887788888866 555777999999999999999999999887665554
No 98
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.05 E-value=3.7e-08 Score=101.06 Aligned_cols=86 Identities=15% Similarity=0.181 Sum_probs=76.6
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHh------hhccc
Q 013611 29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYI------QDNLN 102 (439)
Q Consensus 29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l------~~~~g 102 (439)
-++.+.+++.|++.|+.++...|+..+..+.+|.++| |+.-+++++...++|..+|.++...+ ....|
T Consensus 131 ~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~g 204 (495)
T KOG2533|consen 131 VHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAG 204 (495)
T ss_pred HhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCC
Confidence 4578899999999999999999999999999999988 99999999999999999999998886 34689
Q ss_pred chhhhHHHHHHHHHHHHH
Q 013611 103 WALGFGIPCAFMVAALVL 120 (439)
Q Consensus 103 ~~~~F~i~~~~~~i~~~l 120 (439)
|||.|++.+++.++..++
T Consensus 205 W~~~FiI~G~i~~~~gi~ 222 (495)
T KOG2533|consen 205 WRWLFIIEGVITLVLGIV 222 (495)
T ss_pred ceeehhHHHHHHHHHHhe
Confidence 999999999766654443
No 99
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.98 E-value=9.9e-08 Score=99.42 Aligned_cols=315 Identities=14% Similarity=0.087 Sum_probs=163.9
Q ss_pred CCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhh
Q 013611 28 HHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGF 107 (439)
Q Consensus 28 ~~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F 107 (439)
...+...++.+..+.|+|.|... .....++|..|.+. |..++.+..+..-+...+|+.++..+..+-+|||.|
T Consensus 127 tA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~ 199 (599)
T PF06609_consen 127 TAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIF 199 (599)
T ss_pred cCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHH
Confidence 34466779999999999987765 45666899998866 776666666555555556777777776678999999
Q ss_pred HHHHHHHHHHHHHHHhc-Ccceeee-cCCCC--CCcchh--HHHHHHHHhHhhccccCcchhhcccc-c-chhhhhhhhc
Q 013611 108 GIPCAFMVAALVLFLLG-TKTYRFS-IKSKQ--RNPFAR--IGRVFVVAIKTRKATLASEDEAQSSQ-Q-FKFLNKALLA 179 (439)
Q Consensus 108 ~i~~~~~~i~~~l~~~~-~~~~~~~-~~~~~--~~~~~~--~~~~l~~a~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~ 179 (439)
+++++...++++..++. ++..+.+ ++++. ++.+.+ ..+.++.......+.++ ++... . ..| +++.+.
T Consensus 200 ~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlg----l~wgG~~~~~W-~Sa~VI 274 (599)
T PF06609_consen 200 YIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLG----LSWGGYPYYPW-KSAHVI 274 (599)
T ss_pred HHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHH----HhccCCCCCCC-CCccch
Confidence 99988777776644332 2211111 11110 011111 22222222111000000 11111 1 123 222221
Q ss_pred CC-C------CCCCCCC--------CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCcccc
Q 013611 180 TP-D------VSLEDGK--------LCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIP 244 (439)
Q Consensus 180 ~~-~------~~~~~~~--------~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~ 244 (439)
.. . ..+..|+ .+..+...++| .+.. ..+...+..+.|......|+.+...+-.+-..+ ...
T Consensus 275 a~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r-~~~~--~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~-~~~ 350 (599)
T PF06609_consen 275 APLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRR-GFAA--LLVISFISGMNFFSVNILWPQQVVNVFGSDPIS-ITE 350 (599)
T ss_pred hhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccch-HHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcc-cce
Confidence 11 0 0001111 11111122222 2211 112233344445555556666554321110000 012
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.++......+...+...+.+.+..+.. +.+..+.+|.+++.+.+.++..... ++
T Consensus 351 ~~~~s~~~~fg~~~g~~i~g~l~~~ir----------~~Kw~li~~~~~~ta~~Gama~~~~--------------~n-- 404 (599)
T PF06609_consen 351 IGWISSPVGFGSCAGAVILGLLFSKIR----------HIKWQLIFGSVLMTAFCGAMAAVRP--------------DN-- 404 (599)
T ss_pred eehhhhhHHHHHHHHHHHHHHHHHHcc----------chhHHHHHHHHHHHHHHHHHHHccC--------------CC--
Confidence 345555566665555555555442221 2234566777666665555554321 11
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSII 388 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~ 388 (439)
.+.+ +...++.++|-+.........++-.+|.+.-|+++|+...+|.+|+.+|..+...+
T Consensus 405 --~~~~--i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I 464 (599)
T PF06609_consen 405 --KNAA--IAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAI 464 (599)
T ss_pred --cchH--HHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 1222 23356677777776555556667779999999999999999999999999887654
No 100
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.95 E-value=2.6e-08 Score=96.13 Aligned_cols=286 Identities=11% Similarity=0.095 Sum_probs=149.7
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh---cccchh
Q 013611 29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD---NLNWAL 105 (439)
Q Consensus 29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~---~~g~~~ 105 (439)
..++.-++.+|++.|+..|-+ ..+.|+++|.+++++ |+.+++.......+|..+||.+||++.+ ..| +.
T Consensus 118 S~~F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g-~~ 189 (451)
T KOG2615|consen 118 SRNFAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG-SY 189 (451)
T ss_pred HHHHHHHHHHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHhhHhhhc-cC
Confidence 345556777899999998874 557899999999987 9999999999999999999999999988 233 22
Q ss_pred hhHH-HHHHHHHHHH-H-H--HhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcC
Q 013611 106 GFGI-PCAFMVAALV-L-F--LLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLAT 180 (439)
Q Consensus 106 ~F~i-~~~~~~i~~~-l-~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (439)
.|.. +.+....+.. + + ++..+....++...+.++..+... . ..+....+|.++..-..
T Consensus 190 p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~~~~~~~~~~~~-------~----------~~~~~~~~~~~~v~~lr 252 (451)
T KOG2615|consen 190 PFALPCLLVFILAAGDVTFFPWFLPETLPLRKRNDEHSTLQEAAD-------D----------RLALLKFARIFKVAALR 252 (451)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCccccchhhcccccchhhhhh-------h----------hhhhcchhhhhhhhhhc
Confidence 2333 3322222222 1 1 111111111110000011110000 0 00001111111111000
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh-hcccCCCCCccccchhhhhhHHHHHHHH
Q 013611 181 PDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGA-TMDRTITRSIKIPAASLQLFIGIGIITF 259 (439)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~-~~~~~~g~g~~~~~~~~~~in~~~iii~ 259 (439)
.+...+ ..+..+ .... ..+.|.-..+.|-.... .+...+| -..+..+.+-...++.+.++
T Consensus 253 ------n~p~~~--~i~~~~---------i~~l-~~~ly~~l~s~~~~t~~~l~~~rfg-~ss~~~G~vl~~tGl~m~~~ 313 (451)
T KOG2615|consen 253 ------NPPLLD--FISVLR---------IFGL-HYFLYLELFSGLENTVLFLTHGRFG-YSSMQQGKVLSTTGLLMLVI 313 (451)
T ss_pred ------Cccccc--hHHHHH---------HHHH-HHHHHHHHHHHHHhhHHHhhcCccC-CChhhheeeeehhhHHHHHH
Confidence 000000 011111 1111 11222222222211111 1112222 11233344555555555443
Q ss_pred HHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHH
Q 013611 260 IPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLC 339 (439)
Q Consensus 260 ~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 339 (439)
+....|..++.. . +...+...++.++.=.+++.... .. ...+.....+.
T Consensus 314 ----ql~~~~~l~~~~-~----~~~a~l~~~l~~~vP~~llls~~---------------------~~-~~~l~~~s~l~ 362 (451)
T KOG2615|consen 314 ----QLALVPILPRYK-G----NIKAVLLFSLLLIVPAFLLLSLA---------------------RT-PVVLYLGSTLK 362 (451)
T ss_pred ----HHhccccccccc-c----chhhHHHHHHHHHHHHHHHHhcc---------------------cc-chhhhHHHHHH
Confidence 455666666542 1 12222233333222222222222 12 23456677888
Q ss_pred HHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611 340 GIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN 389 (439)
Q Consensus 340 gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~ 389 (439)
++......+.+...+.+..|.+.||+.+|+.....+++-++||++.|.+.
T Consensus 363 sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~ 412 (451)
T KOG2615|consen 363 SFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIF 412 (451)
T ss_pred HHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeE
Confidence 88888889999999999999999999999999999999999999998775
No 101
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.94 E-value=1.1e-08 Score=94.99 Aligned_cols=314 Identities=11% Similarity=0.165 Sum_probs=176.9
Q ss_pred ccCCCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 013611 24 SCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNW 103 (439)
Q Consensus 24 ~~~~~~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~ 103 (439)
+|.-..+.++.+.++|+++|+|.-..-.+.+.+...+|+.+| ...+|+++....-+|+.+-..+.+++.++.+-
T Consensus 128 a~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~ly~~~~~ 201 (459)
T KOG4686|consen 128 AAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPFLYDTMGR 201 (459)
T ss_pred HhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHHHHHHHHH
Confidence 455667789999999999999999999999999999999998 99999999999999999999999999886542
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCC
Q 013611 104 ALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDV 183 (439)
Q Consensus 104 ~~~F~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (439)
++-...-..+++.+.+-. +..+ ..+.-+... .|.|.-.++..-.
T Consensus 202 ---~~~~~ghT~LG~~l~~~~-~tc~---------------~slical~l-----------------g~~D~rAerilh~ 245 (459)
T KOG4686|consen 202 ---MFPGVGHTLLGLWLCFEV-KTCK---------------QSLICALSL-----------------GLSDDRAERILHL 245 (459)
T ss_pred ---hcccchHHHHHHHHHHHH-HHHH---------------HHHHHHHHh-----------------hhhhhHHHHHHhh
Confidence 111111112222221110 0000 000000000 1111111110000
Q ss_pred CCCCCCCCchhhHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHH---HHHHH
Q 013611 184 SLEDGKLCTLEDVEEAKAL-LRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGI---GIITF 259 (439)
Q Consensus 184 ~~~~~~~~~~~~v~~~k~~-~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~---~iii~ 259 (439)
..-+-++ +.+.+|++.. ..+..+++.+..|++...... ..-......+.| +++....++++. ...+.
T Consensus 246 e~g~~Ge--~pkLtdv~~f~ppfw~~~iicv~yyva~fPFi---~lg~~fF~~rfG----lS~~~a~~i~s~vy~Isav~ 316 (459)
T KOG4686|consen 246 EEGFLGE--EPKLTDVNTFYPPFWVLVIICVLYYVAWFPFI---TLGPMFFQKRFG----LSAVSAGNILSTVYGISAVL 316 (459)
T ss_pred hcCcccC--CcccccccccCccHHHHHHHHHHHHHHHHHHh---hhhHHHHHHhhC----CChhhccchhhhhhhhhhhh
Confidence 0000000 0012222221 112223334445555444322 221111112232 333333333333 34556
Q ss_pred HHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHH
Q 013611 260 IPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLC 339 (439)
Q Consensus 260 ~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 339 (439)
.|+.+.+.++..++. ..+..+.+..-++=..+.+.. .++| ..+.+.
T Consensus 317 spvfg~i~Dk~G~n~----------~wv~~a~~~tl~~H~~l~Ft~---------------------lsPy---~~m~~l 362 (459)
T KOG4686|consen 317 SPVFGAISDKYGFNL----------WWVASACILTLLGHSGLFFTF---------------------LSPY---TSMTFL 362 (459)
T ss_pred hhhHHHhHhhhccee----------hhHHHHHHHHHHHhhhHHhhh---------------------ccHH---HHHHHH
Confidence 777788776554432 223333333222222222211 2333 456778
Q ss_pred HHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHH
Q 013611 340 GIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAA 419 (439)
Q Consensus 340 gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~ 419 (439)
|++..+..-+.+-.+...+|++.-|++-|.-..++++|-++.+.+.+++.+... +. ...+.+|...+.
T Consensus 363 GLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g-----~y-------~~le~ffl~~~~ 430 (459)
T KOG4686|consen 363 GLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG-----SY-------DNLEAFFLIIGL 430 (459)
T ss_pred hhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC-----ch-------hhHHHHHHHHHH
Confidence 888888777778888899999999999999999999999999999999875321 01 234666766677
Q ss_pred HHHHHHHHHHHHhcc
Q 013611 420 LSAGGLLAFLYFAKS 434 (439)
Q Consensus 420 l~~l~~~i~~~~~~~ 434 (439)
+++....+.+.+.||
T Consensus 431 ~aL~svgil~~~N~k 445 (459)
T KOG4686|consen 431 MALTSVGILFYLNKK 445 (459)
T ss_pred HHHHHHHHHhheecc
Confidence 777776666666554
No 102
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.90 E-value=1.9e-06 Score=88.72 Aligned_cols=93 Identities=19% Similarity=0.245 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCccc
Q 013611 328 SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNR 407 (439)
Q Consensus 328 ~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~ 407 (439)
+.|.+.+..++.|+..+-.....-++..+..|+++.+...|+|.+..-..+.+||.+.+.+.+.+
T Consensus 379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~t--------------- 443 (477)
T PF11700_consen 379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDAT--------------- 443 (477)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------
Confidence 34445556678888888888888899999999999999999999999999999999999998765
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhccC
Q 013611 408 AHLDYFYWLLAALSAGGLLAFLYFAKSY 435 (439)
Q Consensus 408 ~~~~~~f~~~~~l~~l~~~i~~~~~~~~ 435 (439)
++..+-+..+.++.+++.+++..+..+.
T Consensus 444 g~~r~g~~~l~~lf~~gl~ll~~v~~~~ 471 (477)
T PF11700_consen 444 GSQRYGFLFLLVLFLIGLILLFFVDVEK 471 (477)
T ss_pred CCchhHHHHHHHHHHHHHHHHhhccchh
Confidence 2334567777788888888776665443
No 103
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.86 E-value=1.3e-06 Score=88.05 Aligned_cols=129 Identities=16% Similarity=0.227 Sum_probs=88.9
Q ss_pred CCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCh
Q 013611 281 ITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPK 360 (439)
Q Consensus 281 ~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~ 360 (439)
.+..+.+.++.+..++=..+.+.... | .......+.+.++++|+..++..++...++.+.+|+
T Consensus 270 ~g~~~ll~~a~~~~~vR~~l~a~~~~--------------~---~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~ 332 (400)
T PF03825_consen 270 FGIKWLLLLALVAYAVRWLLYAYFSD--------------P---WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPP 332 (400)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhcC--------------C---cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCc
Confidence 35666777777777766666665410 0 001122244455689999999999999999999999
Q ss_pred hhHHHHHHHHHHH-hhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhccCc
Q 013611 361 ELKSFGLSIYMSV-LGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYN 436 (439)
Q Consensus 361 ~~~g~~~gl~~~~-~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~~ 436 (439)
+.|++++|++... .++|+.+|..++|.+.+....+. -..+..+|.+.+++.++..+++++.-|+-+
T Consensus 333 ~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~----------~~~~~~~~~v~a~~~~~~~~~f~~~fk~~~ 399 (400)
T PF03825_consen 333 ELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARG----------MFDWSAVFLVFAVMALVILVLFVILFKPKH 399 (400)
T ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchh----------hhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 9999999998875 68999999999998875321110 012345666667777777777777755443
No 104
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.85 E-value=1.7e-06 Score=84.61 Aligned_cols=67 Identities=13% Similarity=0.018 Sum_probs=57.8
Q ss_pred CCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 013611 27 PHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD 99 (439)
Q Consensus 27 ~~~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~ 99 (439)
|...++..|+.++++++.|.|..+...++++++..++++ -++=.+.-...+.+|+++||.+++++..
T Consensus 99 a~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 99 ASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred hhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 345688899999999999999999999999999999876 3455677777778999999999999876
No 105
>PRK11462 putative transporter; Provisional
Probab=98.85 E-value=2.9e-06 Score=87.30 Aligned_cols=87 Identities=10% Similarity=0.154 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc-------cch
Q 013611 32 IIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNL-------NWA 104 (439)
Q Consensus 32 ~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~-------g~~ 104 (439)
...+.+.-.+..++...+.....++.++..++.+ ||++..++...+.++|.++++.+...+.+.. +|+
T Consensus 109 ~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~-----eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~ 183 (460)
T PRK11462 109 MIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT-----QRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQ 183 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence 4445555566788888888899999999988643 3999999999999999988887765544432 566
Q ss_pred hhhHHHHHHHHHHHHHHHh
Q 013611 105 LGFGIPCAFMVAALVLFLL 123 (439)
Q Consensus 105 ~~F~i~~~~~~i~~~l~~~ 123 (439)
....+.++..++...+.+.
T Consensus 184 ~~~~i~~ii~~i~~~i~~~ 202 (460)
T PRK11462 184 GGIAVLSVVAFMMLAFCFF 202 (460)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 6666666555554444443
No 106
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.84 E-value=2.1e-06 Score=85.81 Aligned_cols=119 Identities=12% Similarity=0.109 Sum_probs=89.7
Q ss_pred CchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChh
Q 013611 282 TMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE 361 (439)
Q Consensus 282 ~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~ 361 (439)
++++-+.++..++++=....++. .++|++++...++++-..+..++..-++.+..|++
T Consensus 287 g~k~~Lllag~i~~iRi~~~~~~----------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~r 344 (412)
T PF01306_consen 287 GAKNLLLLAGVIMAIRIIGSGFA----------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKR 344 (412)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHT------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GG
T ss_pred ChHhHHHHHHHHHHHHHHHHhhh----------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh
Confidence 55566666666666655555544 46788889999999998899999999999999999
Q ss_pred hHHHHHHHH-HHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhccCccC
Q 013611 362 LKSFGLSIY-MSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNRE 438 (439)
Q Consensus 362 ~~g~~~gl~-~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~~~~ 438 (439)
..++...+. .+..++|..+.+.+.|.+.+. -++...|++++++.++..++-.+..+|-|++
T Consensus 345 lsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~----------------~G~~~tylimg~iv~~~~li~~f~l~~~~~~ 406 (412)
T PF01306_consen 345 LSATLYLVGFQFAKQIGIIILSPLAGYLYDR----------------IGFQHTYLIMGLIVLPFTLISAFTLKKDKKQ 406 (412)
T ss_dssp GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhhHhh----------------cCcHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence 999998884 789999999999999988753 2345678889988888888877777766553
No 107
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=98.78 E-value=4.4e-07 Score=93.94 Aligned_cols=338 Identities=13% Similarity=0.081 Sum_probs=186.6
Q ss_pred CCchHHHHHHHH-HHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhh
Q 013611 28 HHFQIIVFIFSL-YLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALG 106 (439)
Q Consensus 28 ~~~~~~~~~~~l-~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~ 106 (439)
...+.+.+++.- ++.|+|.|+.......+++.+|+++ |+.|.++-..+..+|.++-|.+.-++.+++|||+.
T Consensus 130 F~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-------R~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~ 202 (509)
T KOG2504|consen 130 FATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-------RALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGA 202 (509)
T ss_pred HHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-------HHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHH
Confidence 344566777766 4589999999999999999888753 89999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHh-HhhccccCcchhhcccccc-hhhhhhhhcCCCCC
Q 013611 107 FGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAI-KTRKATLASEDEAQSSQQF-KFLNKALLATPDVS 184 (439)
Q Consensus 107 F~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 184 (439)
+++-+...+-.++.....++.....+|+++ +.... ..-..... +........ .+..... +--+..+... .
T Consensus 203 ~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~ 274 (509)
T KOG2504|consen 203 LLIFGGISLNVLVAGALLRPLSPPKKPNEE-KDLRN-SAASVESTPKPVELRISE---RDSGLKKLSLSNLATLKR---G 274 (509)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcCCCchhh-hhhcc-cccccccccccccccccc---CCCCCCcccccchhhhhh---C
Confidence 988776554444443443331111111100 00000 00000000 000000000 0000000 0000000000 0
Q ss_pred CCCCC--C-CchhhHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHH
Q 013611 185 LEDGK--L-CTLEDVEEAKALL---RLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIIT 258 (439)
Q Consensus 185 ~~~~~--~-~~~~~v~~~k~~~---~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii 258 (439)
...+. . .......|. .++ .++.+.+......+.+......+..... ..| -.+-..+.+.++.++.-++
T Consensus 275 ~~~~~~~~~~~~~~~~d~-~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~----~~g-~~~~~aa~l~Siigi~~i~ 348 (509)
T KOG2504|consen 275 PDKWRNSPLQAFLSMLDL-SLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAK----SLG-LSSNDAAFLLSIIGVSDII 348 (509)
T ss_pred CccccccchhhhhhhhhH-HHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcC-CChhhhHHHHHHHHHhhhh
Confidence 00000 0 000000011 111 1222222222222222222222333332 111 1122233344455555555
Q ss_pred HHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHH
Q 013611 259 FIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLL 338 (439)
Q Consensus 259 ~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 338 (439)
..++.+.+.+ +. . .+......++++..+++..+.++. .+.+.++...++
T Consensus 349 gRi~~G~laD----~~-~----~~~~~~~~~~ll~~gl~~~~~p~~----------------------~~~~~l~~~~~~ 397 (509)
T KOG2504|consen 349 GRIILGLLAD----KP-G----IRALVLFLLTLLIAGLARLFLPFA----------------------TTYVGLIVFSIL 397 (509)
T ss_pred hhhhhhhhcC----cc-c----cchHHHHHHHHHHHHHHHHHHHHh----------------------ccHHHHHHHHHH
Confidence 5555555432 21 0 233444566666677666555544 345667777888
Q ss_pred HHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHH
Q 013611 339 CGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLA 418 (439)
Q Consensus 339 ~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~ 418 (439)
.|+..+...........+.++.+.-+.+.|+..+..+++..+|+-+.|.+.+.+ ++|...|.+.+
T Consensus 398 fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t---------------g~Y~~~f~~~g 462 (509)
T KOG2504|consen 398 FGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT---------------GNYDHAFYFCG 462 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc---------------CCeeeehhhcC
Confidence 999988887666678999999999999999999999999999999999776654 33566778888
Q ss_pred HHHHHHHHHHHHHh
Q 013611 419 ALSAGGLLAFLYFA 432 (439)
Q Consensus 419 ~l~~l~~~i~~~~~ 432 (439)
+..++++++++...
T Consensus 463 ~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 463 LCFLLSAVLLLILR 476 (509)
T ss_pred hHHHHHHHHHHHhH
Confidence 88888887766665
No 108
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=98.67 E-value=2.3e-05 Score=81.94 Aligned_cols=87 Identities=14% Similarity=0.070 Sum_probs=77.5
Q ss_pred CCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhh
Q 013611 27 PHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALG 106 (439)
Q Consensus 27 ~~~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~ 106 (439)
+...+.+.+++.|++.|++.++...+...+++|.++++. |..+.++ +.....|+.+++..++++.. +||+.
T Consensus 166 a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~ 236 (521)
T KOG0255|consen 166 AFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWL 236 (521)
T ss_pred HHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHH
Confidence 455688999999999999999999999999999999988 9999999 99999999999999999987 89999
Q ss_pred hHHHHHHHHHHHHHHH
Q 013611 107 FGIPCAFMVAALVLFL 122 (439)
Q Consensus 107 F~i~~~~~~i~~~l~~ 122 (439)
+++..+..++.++.++
T Consensus 237 ~~~~~~~~~~~~~~~~ 252 (521)
T KOG0255|consen 237 FWIISIPSGLFLLLWF 252 (521)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9998876666655533
No 109
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.65 E-value=2.6e-05 Score=79.55 Aligned_cols=89 Identities=10% Similarity=0.120 Sum_probs=74.3
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHH-H-hhhcccchhh
Q 013611 29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVI-Y-IQDNLNWALG 106 (439)
Q Consensus 29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g-~-l~~~~g~~~~ 106 (439)
..+...+.++|++.|+..|.......-++.+..|++- |+..-....+++++|-++|..++- . +...-.|++.
T Consensus 113 ~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l 186 (485)
T KOG0569|consen 113 APSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYL 186 (485)
T ss_pred hhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHH
Confidence 4467889999999999999999999999999999987 999999999999999999965543 3 4455679999
Q ss_pred hHHHHHHHHHHHHHHHh
Q 013611 107 FGIPCAFMVAALVLFLL 123 (439)
Q Consensus 107 F~i~~~~~~i~~~l~~~ 123 (439)
+.+..+..++.+....+
T Consensus 187 ~~~~~i~~~~~l~~l~~ 203 (485)
T KOG0569|consen 187 LAFPLIPALLQLALLPF 203 (485)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99988777766665544
No 110
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.58 E-value=2.5e-05 Score=75.64 Aligned_cols=87 Identities=11% Similarity=0.188 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhhhHH
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNL-NWALGFGI 109 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~-g~~~~F~i 109 (439)
+...++.+-++.|.|.+.......+.+.+.||++ -+..++.|....++|+++++.+...+.++. |||....+
T Consensus 98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~ 170 (395)
T COG2807 98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGF 170 (395)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHH
Confidence 5677888889999999999999999999999976 468999999999999999999999999887 79988877
Q ss_pred HHHHHHHHHHHHHhc
Q 013611 110 PCAFMVAALVLFLLG 124 (439)
Q Consensus 110 ~~~~~~i~~~l~~~~ 124 (439)
=+...++++++++.-
T Consensus 171 WAl~allAl~~WlPq 185 (395)
T COG2807 171 WALLALLALLIWLPQ 185 (395)
T ss_pred HHHHHHHHHHHHhhh
Confidence 666666777666554
No 111
>PRK03545 putative arabinose transporter; Provisional
Probab=98.58 E-value=4e-06 Score=84.12 Aligned_cols=137 Identities=12% Similarity=-0.012 Sum_probs=100.7
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611 246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI 325 (439)
Q Consensus 246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (439)
++......+...+..+..+.+. +| .+.++.+..+.++.+++.....+.
T Consensus 47 g~~~~~~~~~~~~~~~~~g~l~----dr-------~g~r~~~~~~~~~~~~~~~~~~~~--------------------- 94 (390)
T PRK03545 47 GLMLTIYAWVVALMSLPLMLLT----SN-------VERRKLLIGLFVLFIASHVLSALA--------------------- 94 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----cC-------CChHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 4555566666666655555544 44 245567778888888887776654
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCc
Q 013611 326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNL 405 (439)
Q Consensus 326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l 405 (439)
.+.+++.+..+++|++.....+....++.+..|+++|++++|++....++|..+|+.+.+.+.+.
T Consensus 95 -~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~-------------- 159 (390)
T PRK03545 95 -WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY-------------- 159 (390)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH--------------
Confidence 25777778888999999888888888999999999999999999999999999999998877532
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHH
Q 013611 406 NRAHLDYFYWLLAALSAGGLLAFLYF 431 (439)
Q Consensus 406 ~~~~~~~~f~~~~~l~~l~~~i~~~~ 431 (439)
.+....|+..++++++..+..+..
T Consensus 160 --~gw~~~f~~~~~~~~l~~~~~~~~ 183 (390)
T PRK03545 160 --LGWRTTFLAIGGGALITLLLLIKL 183 (390)
T ss_pred --hcHHHHHHHHHHHHHHHHHHHHHh
Confidence 123566777777776665544443
No 112
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=98.57 E-value=1.7e-05 Score=80.26 Aligned_cols=87 Identities=8% Similarity=0.053 Sum_probs=73.0
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH
Q 013611 29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFG 108 (439)
Q Consensus 29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~ 108 (439)
..++..+.+.|++.|+++|... +....++.++|+++ |+++.+++..+.++|.++++++++++ ..+||++-+-
T Consensus 112 a~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~qll-~s~gWr~y~~ 183 (511)
T TIGR00806 112 GTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQLL-VTLGWISYST 183 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCchhHHH
Confidence 4578899999999999999999 99999999999877 99999999999999999999999995 4689997665
Q ss_pred HH---HHHHHHHHHHHHh
Q 013611 109 IP---CAFMVAALVLFLL 123 (439)
Q Consensus 109 i~---~~~~~i~~~l~~~ 123 (439)
++ .....++.++.++
T Consensus 184 Ln~Isl~s~~~a~~~a~~ 201 (511)
T TIGR00806 184 LNIISLVFMTFSVFLALF 201 (511)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 44 4444455554444
No 113
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.57 E-value=6e-06 Score=83.66 Aligned_cols=145 Identities=14% Similarity=0.062 Sum_probs=102.9
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.++..+...+...+..++.+.+.+++ ++++.+.+++++.+++..+.++.
T Consensus 45 ~g~~~s~~~~~~~~~~~~~g~l~dr~-----------G~r~~~~~~~~~~~~~~~~~~~~-------------------- 93 (412)
T TIGR02332 45 FGLAATLFYAAYVICGIPSNIMLAII-----------GARRWIAGIMVLWGIASTATMFA-------------------- 93 (412)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHh-----------ChHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 34556666666666666666655433 33346677888888887777654
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN 404 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~ 404 (439)
.+.+++++..++.|++++...+....++.+..|+++||+++|+++....+|..+++.+++.+.+...-..
T Consensus 94 --~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~-------- 163 (412)
T TIGR02332 94 --TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMA-------- 163 (412)
T ss_pred --cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--------
Confidence 2567788889999999999988888889999999999999999999999999999999887753110000
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHh
Q 013611 405 LNRAHLDYFYWLLAALSAGGLLAFLYFA 432 (439)
Q Consensus 405 l~~~~~~~~f~~~~~l~~l~~~i~~~~~ 432 (439)
..+....|.+.++.+++..++.++..
T Consensus 164 --~~gwr~~f~~~~~~~l~~~~~~~~~~ 189 (412)
T TIGR02332 164 --LKGWQWLFLLEGFPSVILGVMTWFWL 189 (412)
T ss_pred --ccchhHHHHHHHHHHHHHHHHHhhcc
Confidence 01235677777777666555554443
No 114
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.56 E-value=4.4e-06 Score=82.71 Aligned_cols=175 Identities=14% Similarity=0.121 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCch
Q 013611 205 LIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITML 284 (439)
Q Consensus 205 ~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~ 284 (439)
++.+.++....-+..+....-+++.++..+.. +-..+++-++.++.+.+..|+...+..++- .+
T Consensus 15 l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs-----~~~aG~lis~yAl~~ai~ap~l~~lt~r~~-----------Rr 78 (394)
T COG2814 15 LLALALAAFAIGTTEFVPVGLLPPIAADLGVS-----EGAAGQLITAYALGVALGAPLLALLTGRLE-----------RR 78 (394)
T ss_pred HHHHHHHHHHHHhHHHHHHhchHHHHHHcCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHcccc-----------hH
Confidence 33444444444444444444455555433221 223578889999999999999888764333 33
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHH
Q 013611 285 QRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKS 364 (439)
Q Consensus 285 ~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g 364 (439)
+.+...+.++.+|.++..+. .+++.+++..++.|++.+..++.....+.+.+|+++|+
T Consensus 79 ~lLl~~l~lFi~~n~l~alA----------------------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~ 136 (394)
T COG2814 79 RLLLGLLALFIVSNLLSALA----------------------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRG 136 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchh
Confidence 45566677788888777766 36888999999999999999988889999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611 365 FGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAK 433 (439)
Q Consensus 365 ~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~ 433 (439)
+++|+.+....++..+|.-++.++.+.. +| ...|+.+++++++..+..+...+
T Consensus 137 ~Aiaiv~~G~tlA~v~GvPLGt~ig~~~------GW----------R~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 137 RALALVFTGLTLATVLGVPLGTFLGQLF------GW----------RATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHh------hH----------HHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999988886532 34 67899999999988888777776
No 115
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.52 E-value=1.2e-05 Score=82.02 Aligned_cols=136 Identities=13% Similarity=0.073 Sum_probs=98.8
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.+++.....+...+..++.+++.+++. +++.+.++.++.+++.++.....
T Consensus 60 ~g~~~~~~~~~~~~~~~~~G~l~dr~g-----------~r~~~~~~~~~~~~~~~~~~~~~------------------- 109 (434)
T PRK11663 60 IGLLATLFYITYGVSKFVSGIVSDRSN-----------ARYFMGIGLIATGIINILFGFSS------------------- 109 (434)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHhhcC-----------CchhHHHHHHHHHHHHHHHHHHh-------------------
Confidence 355666666777777777777655433 33456778888877776666542
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN 404 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~ 404 (439)
+.+.++...++.+++++...+.....+.+..|++.||+++|+++...++|+.+++.+.+.+.+.
T Consensus 110 ---~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~------------- 173 (434)
T PRK11663 110 ---SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH------------- 173 (434)
T ss_pred ---HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------------
Confidence 4566666778889999888888888999999999999999999999999999999998877532
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHH
Q 013611 405 LNRAHLDYFYWLLAALSAGGLLAFL 429 (439)
Q Consensus 405 l~~~~~~~~f~~~~~l~~l~~~i~~ 429 (439)
.+..+.|...++++++..++..
T Consensus 174 ---~gw~~~f~~~~i~~~~~~~~~~ 195 (434)
T PRK11663 174 ---YGWRYGMMIAGIIAIVVGLFLC 195 (434)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHH
Confidence 1235567676666655544433
No 116
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.52 E-value=9e-06 Score=82.05 Aligned_cols=135 Identities=13% Similarity=0.043 Sum_probs=97.0
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCc
Q 013611 247 SLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIP 326 (439)
Q Consensus 247 ~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (439)
.......+...+..|+.+.+.+++ +.++.+..+.++.++++..+...
T Consensus 50 l~~~~~~l~~~~~~~~~G~l~dr~-----------g~k~~l~~~~~~~~~~~~~~~~~---------------------- 96 (400)
T PRK11646 50 IALGLRQFIQQGLGIFGGAIADRF-----------GAKPMIVTGMLMRAAGFATMAIA---------------------- 96 (400)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHh-----------CchHHHHHHHHHHHHHHHHHHHh----------------------
Confidence 334444445555566666665433 23345677888888877766543
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcc
Q 013611 327 TSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLN 406 (439)
Q Consensus 327 ~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~ 406 (439)
.+.|++.+..++.|++++...++..+.+.+.+|++.|++++|+.....++|..+|+.+.+.+..
T Consensus 97 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~---------------- 160 (400)
T PRK11646 97 HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ---------------- 160 (400)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 2567778888999999998888888899999999999999999999999999999999998752
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHH
Q 013611 407 RAHLDYFYWLLAALSAGGLLAFLYF 431 (439)
Q Consensus 407 ~~~~~~~f~~~~~l~~l~~~i~~~~ 431 (439)
.++...|+..+.+.++..++....
T Consensus 161 -~g~~~~f~~~~~~~~~~~i~~~~~ 184 (400)
T PRK11646 161 -YDFRLVCATGAVLFVLAAAFNAWL 184 (400)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHh
Confidence 123456666666666655444333
No 117
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.50 E-value=0.00014 Score=73.77 Aligned_cols=277 Identities=13% Similarity=0.074 Sum_probs=154.4
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh-------ccc
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD-------NLN 102 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~-------~~g 102 (439)
.+....++.-.+.+++..++.-...++.+.+.++.+ ||.+..+|.....++|.++...+.+.+.. ..|
T Consensus 110 ~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~-----ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g 184 (467)
T COG2211 110 GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ-----ERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALG 184 (467)
T ss_pred cchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhh
Confidence 455566677788999999999999999999998743 39999999999999997776666655543 245
Q ss_pred chhhhHHHHHHHHHHHHHHHhcCcc-eeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCC
Q 013611 103 WALGFGIPCAFMVAALVLFLLGTKT-YRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATP 181 (439)
Q Consensus 103 ~~~~F~i~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (439)
|+..-++.++...+...+.+...|+ ..++.|.+ + +...++.+.-
T Consensus 185 ~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~--~----------------------------~~~~~~~~~~----- 229 (467)
T COG2211 185 YQGTALVLGVIGVILLLFCFFNVKERVVETQPTK--T----------------------------GVKLKLKDSF----- 229 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCccccCc--c----------------------------cccccHHHHH-----
Confidence 5555555554444444444433332 11111111 0 0000000000
Q ss_pred CCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHH
Q 013611 182 DVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIP 261 (439)
Q Consensus 182 ~~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~p 261 (439)
......|.++. ..+.....+..++...+.+.... +-.+| ..+..+...........++..+
T Consensus 230 ------------~~~~~Nrp~~~---~l~~~l~~~~~~~i~~s~~~yy~---~y~lg-~~~l~~~~~~~~~~~~~l~~~~ 290 (467)
T COG2211 230 ------------LLIFKNRPLLL---LLLMNLLLFIAFNIRGSIMVYYV---TYVLG-DPELFAYLLLLASGAGLLIGLI 290 (467)
T ss_pred ------------HHHHccchHHH---HHHHHHHHHHHHHHHhhhhheeE---EEEcC-ChHHHHHHHHHHHHHHHHHHHH
Confidence 00111222222 22233344444444444333221 11222 1122222222222222222222
Q ss_pred hhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHH
Q 013611 262 IYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGI 341 (439)
Q Consensus 262 l~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gi 341 (439)
..|.+.|+ +.+++.+.+|.++.+++...+.+.. ..+.++.++..++.++
T Consensus 291 -----~~p~L~~~------~gkk~~~~~~~~~~~i~~~~~~f~~--------------------~~~~~l~~~~~~i~~~ 339 (467)
T COG2211 291 -----LWPRLVKK------FGKKKLFLIGLLLLAVGYLLLYFTP--------------------AGSVVLIVVALIIAGV 339 (467)
T ss_pred -----hHHHHHHH------hchHHHHHHHHHHHHHHHHHHHhhc--------------------CcchHHHHHHHHHHHH
Confidence 33333332 3455677788888888877776653 1245556666677777
Q ss_pred HHHHHhhhhHHHHH-------hhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCC
Q 013611 342 ADVFTIVGLQEFFY-------DQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDG 396 (439)
Q Consensus 342 ge~l~~~~~~~~~~-------~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~ 396 (439)
|.....+-..+++. -..-++..|...|...+.+=+|.+++..+.+..-....+.+
T Consensus 340 g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv~ 401 (467)
T COG2211 340 GTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGYVP 401 (467)
T ss_pred HhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 77775444433333 33667888999999999999999999999998876655544
No 118
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.49 E-value=1.9e-05 Score=82.01 Aligned_cols=140 Identities=11% Similarity=0.113 Sum_probs=104.2
Q ss_pred cchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC
Q 013611 244 PAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNV 323 (439)
Q Consensus 244 ~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (439)
..+|..+...+...+..|+.+++.+++.+ ++.+.++.++.+++.++.+..
T Consensus 42 ~~~~~~~~~~l~~~~~~~~~G~l~D~~Gr-----------k~~l~~~~~~~~~~~~~~~~a------------------- 91 (495)
T PRK14995 42 ELLWIIDIYSLVMAGMVLPMGALGDRIGF-----------KRLLMLGGTLFGLASLAAAFS------------------- 91 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------HHHHHHHHHHHHHHHHHHHHc-------------------
Confidence 34677777788888888888877664433 346778888888887776654
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhh-cChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCC
Q 013611 324 TIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQ-IPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFA 402 (439)
Q Consensus 324 ~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~-aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~ 402 (439)
.+.+.+++..+++|+|.+...+.....+.+. .|++.|++++|++....++|..+||.+.+.+.+.. +|
T Consensus 92 ---~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~------gw-- 160 (495)
T PRK14995 92 ---PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF------YW-- 160 (495)
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------Ch--
Confidence 2577788888999999999887776666665 58899999999999999999999999999886421 23
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHHHHHHh
Q 013611 403 DNLNRAHLDYFYWLLAALSAGGLLAFLYFA 432 (439)
Q Consensus 403 ~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~ 432 (439)
.+.|+....++++..++.+...
T Consensus 161 --------r~~f~i~~~~~~~~~~l~~~~l 182 (495)
T PRK14995 161 --------GSVFLINVPIVLVVMGLTARYV 182 (495)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHhC
Confidence 5567666666666655544443
No 119
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.46 E-value=8.8e-06 Score=79.60 Aligned_cols=135 Identities=18% Similarity=0.228 Sum_probs=104.2
Q ss_pred cchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC
Q 013611 244 PAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNV 323 (439)
Q Consensus 244 ~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (439)
..+++..+..+...+..|+.+.+.+++ ++++.+.++.++.+++..+..+.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~g~l~dr~-----------g~r~~l~~~~~~~~~~~~~~~~~------------------- 82 (352)
T PF07690_consen 33 QIGLLFSAFFLGSALFSPFAGYLSDRF-----------GRRRVLIIGLLLFALGSLLLAFA------------------- 82 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHS------------HHHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCeeeEeehhhhhhhHHHHhhhh-------------------
Confidence 356677777787888888888876543 33446778888888874444432
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCC
Q 013611 324 TIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFAD 403 (439)
Q Consensus 324 ~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~ 403 (439)
.+.+.+++..++.|+++....+....++.+..|+++|++++|+.....++|..+|+.+.+.+.+.
T Consensus 83 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~------------ 147 (352)
T PF07690_consen 83 ---SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISY------------ 147 (352)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH------------
T ss_pred ---hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhc------------
Confidence 24557888899999999999999999999999999999999999999999999999999988532
Q ss_pred CcccchhhHHHHHHHHHHHHHHHH
Q 013611 404 NLNRAHLDYFYWLLAALSAGGLLA 427 (439)
Q Consensus 404 ~l~~~~~~~~f~~~~~l~~l~~~i 427 (439)
.+....|+..+++.++..++
T Consensus 148 ----~~~~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 148 ----FGWRWAFLISAILSLIAAIL 167 (352)
T ss_dssp ----CHHCCHHHHHHHHHHHHHHH
T ss_pred ----cccccccccccchhhhhhhh
Confidence 12344677778888877664
No 120
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.44 E-value=1.5e-05 Score=79.14 Aligned_cols=140 Identities=14% Similarity=0.034 Sum_probs=103.3
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.+++..+..+...+..++.+.+.+++ ++++.+.++.++.+++.......
T Consensus 42 ~g~~~~~~~~~~~~~~~~~g~l~d~~-----------g~r~~~~~~~~~~~~~~~~~~~~-------------------- 90 (385)
T TIGR00710 42 VQMTLTLYLLGFAAGQLLWGPLSDRY-----------GRRPVLLLGLFIFALSSLGLALS-------------------- 90 (385)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhc-----------CChHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 45566677777777777777765433 23345677777777777666544
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN 404 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~ 404 (439)
.+.+++++..++.|++.....+....++.+..|++.|++++|..+....+|..+|+.+.+.+.+.
T Consensus 91 --~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~------------- 155 (385)
T TIGR00710 91 --NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW------------- 155 (385)
T ss_pred --ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 24667778889999999999888889999999999999999999999999999999998877532
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611 405 LNRAHLDYFYWLLAALSAGGLLAFLYFAK 433 (439)
Q Consensus 405 l~~~~~~~~f~~~~~l~~l~~~i~~~~~~ 433 (439)
.+....|+..+++.++..++.+...+
T Consensus 156 ---~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (385)
T TIGR00710 156 ---LSWHAIFAFLSLAGILLSALIFFILP 181 (385)
T ss_pred ---cCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 12345666667766666665554443
No 121
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.44 E-value=3.5e-05 Score=77.64 Aligned_cols=132 Identities=10% Similarity=-0.021 Sum_probs=99.7
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611 246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI 325 (439)
Q Consensus 246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (439)
++...+..+...+..|+.+.+.+ |. ++++.+..+.++.+++.......
T Consensus 58 g~~~~~~~~~~~~~~~~~g~l~D----r~-------grr~~~~~~~~~~~~~~~~~~~~--------------------- 105 (394)
T PRK10213 58 GQSVTVTAFVAMFASLFITQTIQ----AT-------DRRYVVILFAVLLTLSCLLVSFA--------------------- 105 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc----cc-------CcHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 45556777777777777776654 32 34456678888888777665543
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCc
Q 013611 326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNL 405 (439)
Q Consensus 326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l 405 (439)
.+.+++++..++.|++.+...+.....+.+..|++.|+.+++......++|..+|+.+.+.+.+..
T Consensus 106 -~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~------------- 171 (394)
T PRK10213 106 -NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI------------- 171 (394)
T ss_pred -ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------------
Confidence 357778888899999999998888899999999999999999999999999999999999886321
Q ss_pred ccchhhHHHHHHHHHHHHHHH
Q 013611 406 NRAHLDYFYWLLAALSAGGLL 426 (439)
Q Consensus 406 ~~~~~~~~f~~~~~l~~l~~~ 426 (439)
+....|+..+.++++..+
T Consensus 172 ---gw~~~f~~~~~l~~~~~l 189 (394)
T PRK10213 172 ---GWRNVFNAAAVMGVLCIF 189 (394)
T ss_pred ---CHHHHHHHHHHHHHHHHH
Confidence 235566666665555443
No 122
>PRK10054 putative transporter; Provisional
Probab=98.43 E-value=1.9e-05 Score=79.56 Aligned_cols=137 Identities=15% Similarity=0.111 Sum_probs=95.8
Q ss_pred cchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC
Q 013611 244 PAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNV 323 (439)
Q Consensus 244 ~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (439)
..++..++..+..++..|+.+++.+++.+ ++.+.++.++.++++....+.+
T Consensus 44 ~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~-----------k~~~~~~~~~~~~~~~~~~~~~------------------ 94 (395)
T PRK10054 44 LIGYAMTIALTIGVVFSLGFGILADKFDK-----------KRYMLLAITAFASGFIAIPLVN------------------ 94 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCc-----------chhHHHHHHHHHHHHHHHHHHh------------------
Confidence 34566667777777778888887654333 2355677777777776666542
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCC
Q 013611 324 TIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFAD 403 (439)
Q Consensus 324 ~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~ 403 (439)
+.+..+....+.+.+.....+....+..+..|++.|++++|+.+...++|..+|+.+.+.+... +|
T Consensus 95 ----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~-------g~--- 160 (395)
T PRK10054 95 ----NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQ-------SI--- 160 (395)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cc---
Confidence 3444445556667777777777778888999999999999999999999999999999977521 12
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHH
Q 013611 404 NLNRAHLDYFYWLLAALSAGGLLAFLY 430 (439)
Q Consensus 404 ~l~~~~~~~~f~~~~~l~~l~~~i~~~ 430 (439)
...|...+++.+++.++..+
T Consensus 161 -------~~~f~~~~~~~~i~~i~~~~ 180 (395)
T PRK10054 161 -------NLPFWLAAICSAFPLVFIQI 180 (395)
T ss_pred -------CcHHHHHHHHHHHHHHHHHH
Confidence 34566666666666544333
No 123
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=98.43 E-value=3.6e-05 Score=80.34 Aligned_cols=84 Identities=13% Similarity=0.172 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc-ccchhhhHH
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDN-LNWALGFGI 109 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~-~g~~~~F~i 109 (439)
+...+.++|++.|+|.|+......-++++.-|++. |+...+.+...+++|.++|..++....+. ++||..+.+
T Consensus 141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~ 214 (513)
T KOG0254|consen 141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGL 214 (513)
T ss_pred hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHH
Confidence 78899999999999999999999999999999877 99999999999999999996555555443 589988877
Q ss_pred HHHHHHHHHHH
Q 013611 110 PCAFMVAALVL 120 (439)
Q Consensus 110 ~~~~~~i~~~l 120 (439)
..+..++..+.
T Consensus 215 ~~i~~~~~~~~ 225 (513)
T KOG0254|consen 215 ALIPAVILALG 225 (513)
T ss_pred HHHHHHHHHHH
Confidence 66555544444
No 124
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.42 E-value=9.5e-06 Score=67.76 Aligned_cols=131 Identities=17% Similarity=0.281 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHH
Q 013611 252 IGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWW 331 (439)
Q Consensus 252 n~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
..+..++..|+.+++.++. ++++.+..+..+.+++....... .+.++
T Consensus 7 ~~~~~~~~~~~~g~~~d~~-----------g~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~ 53 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDRF-----------GRKPVLLVGLFIFVLSTAMFALS----------------------SNITV 53 (141)
T ss_pred ehhHHHHHHhhHHHHHhhc-----------chhHHHHHHHHHHHHHHHHHHHh----------------------ccHHH
Confidence 3455566666666654432 23345566666666665554433 24566
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhh
Q 013611 332 LIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLD 411 (439)
Q Consensus 332 ~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 411 (439)
.....++.+++.....+.....+.+..|++.|++.+++.+....+|..+++.+.+.+.+. .++.
T Consensus 54 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------------~~~~ 117 (141)
T TIGR00880 54 LIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF----------------LGWR 117 (141)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc----------------cchH
Confidence 777788999999988888888999999999999999999999999999999998877532 1223
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013611 412 YFYWLLAALSAGGLLAFLYF 431 (439)
Q Consensus 412 ~~f~~~~~l~~l~~~i~~~~ 431 (439)
..|+..+.+.+++.+.....
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 118 APFLFLAILALAAFILLAFL 137 (141)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 45666666666665554443
No 125
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.42 E-value=7.2e-07 Score=88.53 Aligned_cols=140 Identities=16% Similarity=0.247 Sum_probs=112.1
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611 246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI 325 (439)
Q Consensus 246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (439)
+.++..-.+.-+++.|+.+++-+ |+ ++...+++|.++.+++.+..++..
T Consensus 71 Gll~~vf~v~~~i~sPl~gyLad----ry-------NR~~v~~vG~~iW~~Av~~~~fs~-------------------- 119 (493)
T KOG1330|consen 71 GLLQTVFIVVFMIASPLFGYLAD----RY-------NRKRVIAVGIFIWTLAVFASGFSN-------------------- 119 (493)
T ss_pred cchhHHHHHHHHHHHHHHHHHHh----hc-------CcceEEeeHHHHHHHHHHHHHHHH--------------------
Confidence 56677777778888999988754 32 455678899999998888777662
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCc
Q 013611 326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNL 405 (439)
Q Consensus 326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l 405 (439)
.+|.+++...+.|+||..+.|....++.+..|.+.||++++++++...+|+.+|-..++.+...+ ..|
T Consensus 120 --~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~-----~~W----- 187 (493)
T KOG1330|consen 120 --HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT-----FWW----- 187 (493)
T ss_pred --HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc-----cce-----
Confidence 47777888899999999999999999999999999999999999999999999987777776433 123
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611 406 NRAHLDYFYWLLAALSAGGLLAFLYFAK 433 (439)
Q Consensus 406 ~~~~~~~~f~~~~~l~~l~~~i~~~~~~ 433 (439)
.+.|.+.++++++.+++..++.+
T Consensus 188 -----r~af~~~avl~vi~~~L~~~f~~ 210 (493)
T KOG1330|consen 188 -----RWAFRGSAVLGVIVGLLVFLFVR 210 (493)
T ss_pred -----EEEEEeehHHHHHHHHHHHhhcc
Confidence 45678888888888777665544
No 126
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.42 E-value=1.9e-05 Score=77.61 Aligned_cols=142 Identities=15% Similarity=0.128 Sum_probs=102.2
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.+++..+..+..++..|+.+.+.+++.+ ++.+.++.++.+++..+.......
T Consensus 36 ~g~~~~~~~~~~~i~~~~~G~l~dr~g~-----------r~~~~~~~~~~~~~~~~~~~~~~~----------------- 87 (365)
T TIGR00900 36 LSLAALAGMLPYVVLSPIAGALADRYDR-----------KKVMIGADLIRAVLVAVLPFVALL----------------- 87 (365)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHhhch-----------hHHHHHHHHHHHHHHHHHHHHHHc-----------------
Confidence 4567777778888888888887664433 345566666666666655554310
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN 404 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~ 404 (439)
...+.+++.+..++.|++.....+...+++.+..|++.|++++|.......+|..+|+.+.+.+.+.
T Consensus 88 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~------------- 154 (365)
T TIGR00900 88 GGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT------------- 154 (365)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 0125677788889999999999999999999999999999999999999999999999998887532
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHH
Q 013611 405 LNRAHLDYFYWLLAALSAGGLLAFLY 430 (439)
Q Consensus 405 l~~~~~~~~f~~~~~l~~l~~~i~~~ 430 (439)
.+....|++.++..+++.++.+.
T Consensus 155 ---~g~~~~~~~~~~~~~~~~~~~~~ 177 (365)
T TIGR00900 155 ---LGIKWAIWVDAVGFAISALLIVS 177 (365)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHh
Confidence 12244566655555555444433
No 127
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.41 E-value=3.4e-05 Score=77.60 Aligned_cols=112 Identities=14% Similarity=0.062 Sum_probs=85.9
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.+++.....+..++..++.+.+.+++.+ ++.+..+.++.+++.+...+.
T Consensus 52 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~-----------r~~~~~~~~~~~~~~~~~~~~-------------------- 100 (406)
T PRK11551 52 MGWAFSAGILGLLPGALLGGRLADRIGR-----------KRILIVSVALFGLFSLATAQA-------------------- 100 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------chhHHHHHHHHHHHHHHHHHh--------------------
Confidence 4566677777777777777776654333 345666766666665554443
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN 389 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~ 389 (439)
.+.+++++..++.|++.+...+.....+.+..|++.|++++|+.+....+|..+++.+.+.+.
T Consensus 101 --~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 163 (406)
T PRK11551 101 --WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAA 163 (406)
T ss_pred --ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 256677888899999999998888899999999999999999999999999999988876654
No 128
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.41 E-value=1.5e-05 Score=82.12 Aligned_cols=140 Identities=10% Similarity=0.074 Sum_probs=104.6
Q ss_pred cchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC
Q 013611 244 PAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNV 323 (439)
Q Consensus 244 ~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (439)
..++......+..++..|+.+++.+++. +++.+.++.++.+++..+....
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g-----------~r~~~~~~~~~~~~~~~~~~~~------------------- 87 (485)
T TIGR00711 38 QVQWVITSYMLANAISIPLTGWLAKRFG-----------TRRLFLISTFAFTLGSLLCGVA------------------- 87 (485)
T ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHhC-----------cHHHHHHHHHHHHHHHHHHhCc-------------------
Confidence 3467777888888888888888765433 3345677777777776665543
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCC
Q 013611 324 TIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFAD 403 (439)
Q Consensus 324 ~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~ 403 (439)
.+.+.+++..+++|++.+...+....++.+..|++.|++++|++.....+|..+|+.+.+.+.+. .+|
T Consensus 88 ---~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~------~~w--- 155 (485)
T TIGR00711 88 ---PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIEN------YHW--- 155 (485)
T ss_pred ---CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccC------cCc---
Confidence 25677888889999999999988889999999999999999999999999999999998877532 123
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHHh
Q 013611 404 NLNRAHLDYFYWLLAALSAGGLLAFLYFA 432 (439)
Q Consensus 404 ~l~~~~~~~~f~~~~~l~~l~~~i~~~~~ 432 (439)
.+.|+..+.++++..++.++..
T Consensus 156 -------~~~f~~~~~~~~~~~~~~~~~~ 177 (485)
T TIGR00711 156 -------RWIFLINVPIGIIVVVVAFFIL 177 (485)
T ss_pred -------eehhhhhhHHHHHHHHHHHHHc
Confidence 3456666666666555544443
No 129
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=98.38 E-value=3.2e-05 Score=78.89 Aligned_cols=92 Identities=14% Similarity=0.102 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHH
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIP 110 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~ 110 (439)
+.....+.+++..+|......+..++..+.-.+++.+ |+..-++.+....+|.++|..++|.+.+..+++..|.+.
T Consensus 85 s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~ 160 (433)
T PF03092_consen 85 SAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLIS 160 (433)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHH
Confidence 4455667778899999999999999999998766532 788889999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhcCc
Q 013611 111 CAFMVAALVLFLLGTK 126 (439)
Q Consensus 111 ~~~~~i~~~l~~~~~~ 126 (439)
.+...+..+..++..+
T Consensus 161 ~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 161 AALPLLMLIVALFLLE 176 (433)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 7666665544444333
No 130
>PRK10504 putative transporter; Provisional
Probab=98.37 E-value=4.8e-05 Score=78.25 Aligned_cols=140 Identities=13% Similarity=0.137 Sum_probs=99.8
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.+++.....+...+..|+.+++.+++.+| +.+..+.++.+++.+...+.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~r-----------~~~~~~~~~~~~~~~~~~~~-------------------- 95 (471)
T PRK10504 47 MHMVIVSYVLTVAVMLPASGWLADRVGVR-----------NIFFTAIVLFTLGSLFCALS-------------------- 95 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchH-----------HHHHHHHHHHHHHHHHHHHh--------------------
Confidence 34555666666667777777766544332 34556666666666554432
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN 404 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~ 404 (439)
.+.+.+++..+++|+|.+...+.....+.+..|++.+++++|+.....++|..+|+.+.+.+.+.
T Consensus 96 --~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~------------- 160 (471)
T PRK10504 96 --GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY------------- 160 (471)
T ss_pred --CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh-------------
Confidence 25666778889999999998888888899999999999999999999999999999999988642
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611 405 LNRAHLDYFYWLLAALSAGGLLAFLYFAK 433 (439)
Q Consensus 405 l~~~~~~~~f~~~~~l~~l~~~i~~~~~~ 433 (439)
.++.+.|.....+..+..+......+
T Consensus 161 ---~gw~~~f~~~~~~~~l~~~~~~~~~~ 186 (471)
T PRK10504 161 ---ASWHWIFLINIPVGIIGAIATLMLMP 186 (471)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 12355676666666666555554433
No 131
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=3.4e-06 Score=82.25 Aligned_cols=147 Identities=14% Similarity=0.115 Sum_probs=121.3
Q ss_pred cccchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 013611 242 KIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKP 321 (439)
Q Consensus 242 ~~~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (439)
+...+++-...++.-++..|+.+.+.+++. ...-+.+|++.+..+-++.++.+
T Consensus 105 ~~~iG~LFaskA~~qllvnp~~G~l~~~iG-----------y~ipm~~Gl~vmf~sTilFafg~---------------- 157 (464)
T KOG3764|consen 105 NTQIGLLFASKALVQLLVNPFFGNLIDRIG-----------YKIPMVAGLFVMFLSTILFAFGN---------------- 157 (464)
T ss_pred ccchhHHHHHHHHHHHHhcccchhhHHHhc-----------cccHHHHHHHHHHHHHHHHHHcc----------------
Confidence 455677778888888888888888765433 33467899999999988888774
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhh-HHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCC
Q 013611 322 NVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKEL-KSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSW 400 (439)
Q Consensus 322 ~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~-~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~ 400 (439)
+.+.++++..++|+|.......+.+++.+..|++. ||++||...-..++|..+||-++|++.+..
T Consensus 158 ------sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~-------- 223 (464)
T KOG3764|consen 158 ------SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA-------- 223 (464)
T ss_pred ------hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc--------
Confidence 46678899999999999999999999999999776 699999999999999999999999998653
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHHHHHHHhccCcc
Q 013611 401 FADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNR 437 (439)
Q Consensus 401 ~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~~~ 437 (439)
+++.=|.++++++++...+-++..+..+.
T Consensus 224 --------Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~ 252 (464)
T KOG3764|consen 224 --------GKSAPFLVLAIVLLLDGALQLLVIEPTEM 252 (464)
T ss_pred --------CCcCcHHHHHHHHHHHHHHHHheeCcccc
Confidence 23445999999999999988877765544
No 132
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.35 E-value=1.6e-05 Score=78.59 Aligned_cols=138 Identities=14% Similarity=0.099 Sum_probs=103.9
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.+++..+..+...+..|+.+.+.+++.+| +.+.++.++.+++..+..+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~r-----------~~~~~~~~~~~~~~~~~~~~-------------------- 79 (399)
T TIGR00893 31 YGYVFSAFSWGYVVGQFPGGWLLDRFGAR-----------KTLAVFIVIWGVFTGLQAFA-------------------- 79 (399)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhcCcc-----------eeeHHHHHHHHHHHHHHHHH--------------------
Confidence 45677788888888888888876654433 23456777777766666554
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN 404 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~ 404 (439)
.+.+.+++..++.|++.+...+....++.+..|++.|++++|++....++|..+++.+.+.+.+..
T Consensus 80 --~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------------ 145 (399)
T TIGR00893 80 --GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF------------ 145 (399)
T ss_pred --cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC------------
Confidence 256778888899999999999999899999999999999999999999999999999988765321
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHH
Q 013611 405 LNRAHLDYFYWLLAALSAGGLLAFLYF 431 (439)
Q Consensus 405 l~~~~~~~~f~~~~~l~~l~~~i~~~~ 431 (439)
++.+.|...+++.++..++.+..
T Consensus 146 ----~~~~~~~~~~~~~~~~~~~~~~~ 168 (399)
T TIGR00893 146 ----SWQWAFIIEGVLGIIWGVLWLKF 168 (399)
T ss_pred ----CchHHHHHHHHHHHHHHHHhhhe
Confidence 12456767676666665555443
No 133
>PTZ00207 hypothetical protein; Provisional
Probab=98.35 E-value=0.00018 Score=75.56 Aligned_cols=82 Identities=12% Similarity=0.048 Sum_probs=66.5
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHH-HHHHHHHhhhcccchhhhH
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANS-TILVVIYIQDNLNWALGFG 108 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~i-g~~l~g~l~~~~g~~~~F~ 108 (439)
.+.+.+++.|++.|+|.+.+.+.....+.++|| ++ |+++.++...+.++|+++ +++..+++.+ +|+..|+
T Consensus 118 ~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl 188 (591)
T PTZ00207 118 GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------RGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFF 188 (591)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHH
Confidence 478889999999999999999999999999997 44 999999999999999975 6666666653 5787787
Q ss_pred HHHHHHHHHHHH
Q 013611 109 IPCAFMVAALVL 120 (439)
Q Consensus 109 i~~~~~~i~~~l 120 (439)
+.++..++..++
T Consensus 189 ~l~vl~~vv~ll 200 (591)
T PTZ00207 189 FLMSFALVVGIL 200 (591)
T ss_pred HHHHHHHHHHHH
Confidence 777665554443
No 134
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.33 E-value=4.9e-05 Score=76.07 Aligned_cols=137 Identities=15% Similarity=0.135 Sum_probs=102.3
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.++....+.+..++..|+.+.+.+ |. ++++.+.++.++.+++.++.++.
T Consensus 40 ~g~~~s~~~~~~~~~~~~~g~l~d----r~-------g~r~~~~~~~~~~~~~~~l~~~~-------------------- 88 (382)
T PRK10091 40 AGHMISYYALGVVVGAPIIALFSS----RY-------SLKHILLFLVALCVIGNAMFTLS-------------------- 88 (382)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHc----cC-------ccHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 456677778888888888777654 32 33456778888888887766654
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN 404 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~ 404 (439)
.+.+++.+..++.|++++...+.....+.+..|+++|+.++|++.....+|..+|+.+.+.+.+.
T Consensus 89 --~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~------------- 153 (382)
T PRK10091 89 --SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQE------------- 153 (382)
T ss_pred --CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhh-------------
Confidence 25777888889999999998777777888999999999999999999999999999888877531
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHH
Q 013611 405 LNRAHLDYFYWLLAALSAGGLLAFLY 430 (439)
Q Consensus 405 l~~~~~~~~f~~~~~l~~l~~~i~~~ 430 (439)
.+..+.|++.+++.++..+..+.
T Consensus 154 ---~gwr~~f~~~~~~~~~~~~~~~~ 176 (382)
T PRK10091 154 ---FSWRYTFLLIAVFNIAVLASIYF 176 (382)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHH
Confidence 12355677777666665544333
No 135
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.32 E-value=6.5e-05 Score=74.20 Aligned_cols=127 Identities=18% Similarity=0.170 Sum_probs=86.3
Q ss_pred hhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHH
Q 013611 263 YDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIA 342 (439)
Q Consensus 263 ~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gig 342 (439)
.+.+..++.+++ ++..+.+.+|+++..+..+...+.+. +..+| +.-++.|..
T Consensus 303 lg~ii~g~Ld~r------fg~k~vl~~~lvi~~~~~~~~~~~~~-------------------~~~f~---i~gll~g~s 354 (438)
T COG2270 303 LGAIIAGFLDER------FGSKPVLMIGLVILSIAALYLIFLEG-------------------ELDFW---ILGLLVGTS 354 (438)
T ss_pred HHHHHHHHHHHH------hCCceeehHHHHHHHHHHHHHHHccc-------------------cHHHH---HHHHHHHHh
Confidence 344444445443 24445667777766655544444321 12332 334677778
Q ss_pred HHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHH
Q 013611 343 DVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSA 422 (439)
Q Consensus 343 e~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~ 422 (439)
.+-.....-++..+.+|+++.++..|+++++.-.++.+||.+++.+.+.++. ...-+..+..+.+
T Consensus 355 ~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~---------------~r~g~~~i~vll~ 419 (438)
T COG2270 355 LGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGS---------------SRAGVLSIIVLLL 419 (438)
T ss_pred cchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcc---------------hhhHHHHHHHHHH
Confidence 8888878888999999999999999999999999999999999999877632 2334555666677
Q ss_pred HHHHHHHHHh
Q 013611 423 GGLLAFLYFA 432 (439)
Q Consensus 423 l~~~i~~~~~ 432 (439)
++.++++.+-
T Consensus 420 iGl~~L~~v~ 429 (438)
T COG2270 420 IGLLLLLRVK 429 (438)
T ss_pred hhHhhEEeec
Confidence 7766654443
No 136
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=98.31 E-value=9.9e-08 Score=99.47 Aligned_cols=93 Identities=18% Similarity=0.255 Sum_probs=3.0
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc----------
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDN---------- 100 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~---------- 100 (439)
....|+++.++.|+|+....+...+++=|..++++ -...+++++....+|+++|.++|+.....
T Consensus 140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~ 213 (539)
T PF03137_consen 140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPD 213 (539)
T ss_dssp ------------SSS-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhccccCCccceeeeecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCcccccc
Confidence 56889999999999999999999999999998887 67899999999999999999999976421
Q ss_pred -----------c-cchhhhHHHHHHHHHHHHHHHhcCccee
Q 013611 101 -----------L-NWALGFGIPCAFMVAALVLFLLGTKTYR 129 (439)
Q Consensus 101 -----------~-g~~~~F~i~~~~~~i~~~l~~~~~~~~~ 129 (439)
. .|+++|++.++..++..+-+++..|+.+
T Consensus 214 ~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp 254 (539)
T PF03137_consen 214 GVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLP 254 (539)
T ss_dssp -----------------------------------------
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence 2 4999999988777766654444344343
No 137
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.29 E-value=9.1e-05 Score=74.22 Aligned_cols=139 Identities=16% Similarity=0.092 Sum_probs=99.6
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.++...+..+...+..|+.+++.+++.+ ++.+.+|.++.+++.......
T Consensus 40 ~~~~~~~~~~~~~~~~~~~G~l~Dr~g~-----------r~~l~~~~~~~~i~~~~~~~~-------------------- 88 (392)
T PRK10473 40 LHIAFSVYLAGMAAAMLFAGKIADRSGR-----------KPVAIPGAALFIIASLLCSLA-------------------- 88 (392)
T ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHhCC-----------hHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 3455566666777777888887764432 245667777777776665543
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN 404 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~ 404 (439)
.+.++++...++.|++.+...+.....+.+..|++.|++++|+.+....+|..+++.+.+.+.+.
T Consensus 89 --~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~------------- 153 (392)
T PRK10473 89 --ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK------------- 153 (392)
T ss_pred --CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------------
Confidence 24566777788999999988888888999999999999999999999999999999888776431
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHh
Q 013611 405 LNRAHLDYFYWLLAALSAGGLLAFLYFA 432 (439)
Q Consensus 405 l~~~~~~~~f~~~~~l~~l~~~i~~~~~ 432 (439)
.++...|++.++++++..++.....
T Consensus 154 ---~g~~~~~~~~~~~~~i~~~~~~~~~ 178 (392)
T PRK10473 154 ---FPWQSLFYTMAAMGILVLLLSLFIL 178 (392)
T ss_pred ---cChHHHHHHHHHHHHHHHHHHHHHc
Confidence 1234566666666666655544433
No 138
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.28 E-value=5.7e-05 Score=75.45 Aligned_cols=114 Identities=16% Similarity=0.087 Sum_probs=89.9
Q ss_pred cchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC
Q 013611 244 PAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNV 323 (439)
Q Consensus 244 ~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (439)
..+++..+..+...+..|+.+.+.+++.+ ++.+.++.++.+++.++..+.
T Consensus 48 ~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~-----------r~~~~~~~~~~~~~~~~~~~~------------------- 97 (405)
T TIGR00891 48 DAASLISAALISRWFGALMFGLWGDRYGR-----------RLPMVTSIVLFSAGTLACGFA------------------- 97 (405)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------HHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 34567777777888888888877664433 345667777777776665544
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611 324 TIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE 390 (439)
Q Consensus 324 ~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~ 390 (439)
.+.+.+....++.|++++...+....++.+..|++.|++++|+.+...++|..+++.+.+.+.+
T Consensus 98 ---~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~ 161 (405)
T TIGR00891 98 ---PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVP 161 (405)
T ss_pred ---ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2566677888999999999988888999999999999999999999999999999998887753
No 139
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=98.27 E-value=8.7e-05 Score=74.55 Aligned_cols=138 Identities=14% Similarity=0.161 Sum_probs=96.9
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611 246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI 325 (439)
Q Consensus 246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (439)
+.+..+..+...+..|+.+.+.++.. +++.+..+.++.+++..+....
T Consensus 57 g~~~~~~~~~~~~~~~~~g~l~dr~g-----------~r~~~~~~~~~~~~~~~~~~~~--------------------- 104 (408)
T PRK09874 57 GLVFSITFLFSAIASPFWGGLADRKG-----------RKIMLLRSALGMGIVMVLMGLA--------------------- 104 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhC-----------cHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 45566777777888888887765432 2345566777777766655543
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCc
Q 013611 326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNL 405 (439)
Q Consensus 326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l 405 (439)
.+.+++++..++.|++.... +.....+.+..|++.|+.++|+......+|..+++.+.+.+.+.
T Consensus 105 -~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-------------- 168 (408)
T PRK09874 105 -QNIWQFLILRALLGLLGGFV-PNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADS-------------- 168 (408)
T ss_pred -hhHHHHHHHHHHHHHhhhhH-HhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 25666777888888876654 55557788899999999999999999999999999999877532
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611 406 NRAHLDYFYWLLAALSAGGLLAFLYFAK 433 (439)
Q Consensus 406 ~~~~~~~~f~~~~~l~~l~~~i~~~~~~ 433 (439)
.+....|+..+++.++..++.+...+
T Consensus 169 --~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (408)
T PRK09874 169 --YGLRPVFFITASVLFLCFLVTLFCIR 194 (408)
T ss_pred --hCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 12345677777777666665544433
No 140
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.26 E-value=4.9e-05 Score=80.39 Aligned_cols=106 Identities=20% Similarity=0.290 Sum_probs=84.5
Q ss_pred ccCCCCCCCccCCCCc-----------hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHH
Q 013611 15 DCQNNNTAKSCSPHHF-----------QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGI 83 (439)
Q Consensus 15 ~~~~~~~~~~~~~~~~-----------~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~ 83 (439)
.|++|+.+..|.+... -+..++.+.++.|+|+-.+.|...+++=|...+++ -...++++|...
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~------SplYlgi~~~~~ 282 (735)
T KOG3626|consen 209 FCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKN------SPLYLGILYSMA 282 (735)
T ss_pred hhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccC------CcHHHHHHHHHH
Confidence 4666666666663211 34478899999999999999999999999888877 678999999999
Q ss_pred HHHHHHHHHHHHHhhhc-------------------ccchhhhHHHHHHHHHHHHHHHhcCc
Q 013611 84 SFGANSTILVVIYIQDN-------------------LNWALGFGIPCAFMVAALVLFLLGTK 126 (439)
Q Consensus 84 nlG~~ig~~l~g~l~~~-------------------~g~~~~F~i~~~~~~i~~~l~~~~~~ 126 (439)
.+|+++|.++|++.... -.|+++|++++.+.++..+-+++..|
T Consensus 283 ~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk 344 (735)
T KOG3626|consen 283 ILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPK 344 (735)
T ss_pred HhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 99999999999987542 25889999999888887776555444
No 141
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.25 E-value=7e-05 Score=76.48 Aligned_cols=145 Identities=14% Similarity=0.023 Sum_probs=97.5
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.+++..+..+...+..++.+++.+++.+ ++.+.++.++.+++.+.......
T Consensus 63 ~g~~~~~~~~~~~~~~~~~G~l~dr~g~-----------~~~~~~~~~~~~~~~~~~~~~~~------------------ 113 (438)
T TIGR00712 63 LGFALSAISIAYGFSKFIMGSVSDRSNP-----------RVFLPAGLILSAAVMLLMGFVPW------------------ 113 (438)
T ss_pred hHHHHHHHHHHHHHhhhccchhhhccCC-----------ceehHHHHHHHHHHHHHHhcccc------------------
Confidence 4556666666667766777776543332 23456677777777665543310
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN 404 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~ 404 (439)
...+.+.+.+..++.|++++...+.....+.+..|++.||+++|+++...++|+.+++.+.+......
T Consensus 114 ~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~------------ 181 (438)
T TIGR00712 114 ATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF------------ 181 (438)
T ss_pred ccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh------------
Confidence 01245556667788899998887777788899999999999999999999999999988776543210
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611 405 LNRAHLDYFYWLLAALSAGGLLAFLYFAK 433 (439)
Q Consensus 405 l~~~~~~~~f~~~~~l~~l~~~i~~~~~~ 433 (439)
.+....|+..++++++..++.++..+
T Consensus 182 ---~~w~~~f~~~~~~~~i~~~~~~~~~~ 207 (438)
T TIGR00712 182 ---NDWHAALYFPAICAIIVALFAFAMMR 207 (438)
T ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 12255677777777776655544433
No 142
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.25 E-value=3.4e-05 Score=79.71 Aligned_cols=144 Identities=11% Similarity=0.034 Sum_probs=103.7
Q ss_pred cchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC
Q 013611 244 PAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNV 323 (439)
Q Consensus 244 ~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (439)
..+.+.....+...+..++.+++.++. ++.++.+.+|.++.+++.+++++..
T Consensus 49 ~ag~~~~~~~~~~~~~~~~~G~laDr~----------~G~~~~l~~~~~~~~~g~~~~~~~~------------------ 100 (475)
T TIGR00924 49 QAFIIFGAYSALVYLLTSVGWWFGDRV----------WGTKKTMVLGGIVLMLGHFMLAMSI------------------ 100 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhh----------cchHHHHHHHHHHHHHHHHHHHhcc------------------
Confidence 345566666667777777777766541 1334567788888888877766531
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChh---hHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCC
Q 013611 324 TIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE---LKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSW 400 (439)
Q Consensus 324 ~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~---~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~ 400 (439)
+.+.+.+..++.++|+++..++...++.++.|++ .|+++.++++...++|..+|+.+.+.+.+.
T Consensus 101 ----~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~--------- 167 (475)
T TIGR00924 101 ----YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAEN--------- 167 (475)
T ss_pred ----cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 3445666778899999999888888999998875 488899999999999999999999988632
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHHHHHHHhccC
Q 013611 401 FADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSY 435 (439)
Q Consensus 401 ~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~ 435 (439)
.++...|...++.++++.++++...+++
T Consensus 168 -------~g~~~~f~~~~~~~~~~~l~~~~~~~~~ 195 (475)
T TIGR00924 168 -------YGYHVGFNLAAVGMVIGLLTFFAGRHML 195 (475)
T ss_pred -------cChHHHHHHHHHHHHHHHHHHHHccccc
Confidence 1345667777766667766666655444
No 143
>TIGR00895 2A0115 benzoate transport.
Probab=98.23 E-value=3e-05 Score=77.12 Aligned_cols=113 Identities=17% Similarity=0.121 Sum_probs=85.8
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.+++..+..+..++..++.+.+.+++. +++.+..+.++.+++..+....
T Consensus 54 ~~~~~~~~~~~~~~~~~~~g~l~d~~g-----------~~~~~~~~~~~~~~~~~~~~~~-------------------- 102 (398)
T TIGR00895 54 LGFLFSAGLIGMAFGALFFGPLADRIG-----------RKRVLLWSILLFSVFTLLCALA-------------------- 102 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhh-----------hHHHHHHHHHHHHHHHHHHHHc--------------------
Confidence 345556666666676777777655433 2345566777777666555543
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE 390 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~ 390 (439)
.+.+.+++..++.|++.+...+....++.+..|++.|++++|+......+|..+++.+.+.+.+
T Consensus 103 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 166 (398)
T TIGR00895 103 --TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP 166 (398)
T ss_pred --cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh
Confidence 2466677888999999999988888999999999999999999999999999999999887753
No 144
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.22 E-value=0.00019 Score=72.40 Aligned_cols=137 Identities=13% Similarity=0.041 Sum_probs=93.9
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611 246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI 325 (439)
Q Consensus 246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (439)
++......+...+..|+.+.+.+++ ++++.+.++..+.+++.......
T Consensus 51 ~~~~~~~~~~~~~~~~~~G~l~dr~-----------g~r~~l~~~~~~~~~~~~~~~~~--------------------- 98 (406)
T PRK15402 51 PTSMTAYLAGGMFLQWLLGPLSDRI-----------GRRPVMLAGVAFFILTCLAILLA--------------------- 98 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-----------CChHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 3444555666666666666665433 23345566777777666555443
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCc
Q 013611 326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNL 405 (439)
Q Consensus 326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l 405 (439)
.+.+.++...++.|++.....+.....+.+..|++.++..+++......+|..+|+.+.+.+.+.. +|
T Consensus 99 -~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~------~w----- 166 (406)
T PRK15402 99 -QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVL------PW----- 166 (406)
T ss_pred -ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc------Cc-----
Confidence 245667777888999988877777788889999999999999998888899999999888775321 23
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHH
Q 013611 406 NRAHLDYFYWLLAALSAGGLLAFLYF 431 (439)
Q Consensus 406 ~~~~~~~~f~~~~~l~~l~~~i~~~~ 431 (439)
...|+..++++++..+..+..
T Consensus 167 -----~~~~~~~~~~~~~~~~~~~~~ 187 (406)
T PRK15402 167 -----RGMFVLFAALAALSFFGLWRA 187 (406)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHh
Confidence 456666677766665544433
No 145
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.21 E-value=7.1e-05 Score=72.81 Aligned_cols=136 Identities=18% Similarity=0.280 Sum_probs=102.5
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.++...+..+...+..|+.+.+.++..+ ++.+.++.++.+++.......
T Consensus 36 ~~~~~~~~~~~~~~~~~~~g~~~d~~g~-----------r~~~~~~~~~~~~~~~~~~~~-------------------- 84 (352)
T cd06174 36 AGLIVSAFSLGYALGSLLAGYLSDRFGR-----------RRVLLLGLLLFALGSLLLAFA-------------------- 84 (352)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhCC-----------chhhHHHHHHHHHHHHHHHHh--------------------
Confidence 4566677777777878887777654332 235677777777777666554
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN 404 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~ 404 (439)
.+.+.+.+..++.|++.....+....+..+..|+++|++.++......++|..+++.+.+.+.+.
T Consensus 85 --~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------------- 149 (352)
T cd06174 85 --SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES------------- 149 (352)
T ss_pred --ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 24667788889999999999899989999999999999999999999999999999999987632
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHH
Q 013611 405 LNRAHLDYFYWLLAALSAGGLLAFL 429 (439)
Q Consensus 405 l~~~~~~~~f~~~~~l~~l~~~i~~ 429 (439)
.+....|++.+.+.++..++..
T Consensus 150 ---~~~~~~~~~~~~~~~~~~~~~~ 171 (352)
T cd06174 150 ---LGWRWLFLILAILGLLLALLLL 171 (352)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHH
Confidence 1234566666666666655443
No 146
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.20 E-value=0.00018 Score=72.95 Aligned_cols=138 Identities=9% Similarity=0.042 Sum_probs=96.2
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCc
Q 013611 247 SLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIP 326 (439)
Q Consensus 247 ~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (439)
+..++..+...+..++.+.+.+ |. ++++.+..+.++.+++.......
T Consensus 55 ~~~s~~~~~~~~~~~~~G~l~d----r~-------Grr~~l~~~~~~~~~~~~~~~~a---------------------- 101 (413)
T PRK15403 55 ASVSLYLAGGMALQWLLGPLSD----RI-------GRRPVLITGALIFTLACAATLFT---------------------- 101 (413)
T ss_pred HHHHHHHHHHHHHHHhhhHHHH----Hc-------CchHHHHHHHHHHHHHHHHHHHc----------------------
Confidence 3444555555666666665554 43 23346667777777766655543
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcc
Q 013611 327 TSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLN 406 (439)
Q Consensus 327 ~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~ 406 (439)
.+.+++++..+++|++++...+.....+.+..|++.++++++++....++|..+|+.+++.+.+.
T Consensus 102 ~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~--------------- 166 (413)
T PRK15403 102 TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF--------------- 166 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------
Confidence 35777888889999999876666666777888999999999999999999999999988877531
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611 407 RAHLDYFYWLLAALSAGGLLAFLYFAK 433 (439)
Q Consensus 407 ~~~~~~~f~~~~~l~~l~~~i~~~~~~ 433 (439)
.+..+.|+..+++.+++.+..++..+
T Consensus 167 -~gw~~~f~~~~~~~~i~~~~~~~~lp 192 (413)
T PRK15403 167 -VHWKVLFAIIAVMGLIAFVGLLLAMP 192 (413)
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 12356777777777777655444333
No 147
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.20 E-value=2.3e-05 Score=80.70 Aligned_cols=146 Identities=11% Similarity=-0.092 Sum_probs=99.5
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.+++.+...+...+..|+.+.+.+++ ++++.+.++.++.+++.+..+.....
T Consensus 66 ~g~~~s~~~~~~~~~~~~~G~l~Dr~-----------g~r~~l~~~~~~~~~~~~~~~~~~~~----------------- 117 (467)
T PRK09556 66 LGMIGLGFSITYGVGKTLVGYYADGK-----------NTKQFLPFLLILSAICMLGFGASLGS----------------- 117 (467)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHhhcc-----------CccchHHHHHHHHHHHHHHHHHHHhc-----------------
Confidence 45666666677777777777765433 33445667777777666555543210
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN 404 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~ 404 (439)
...+.+.+++..++.|++++...+.....+.+..|+++||+++|++....++|..+++.+........ . ...|
T Consensus 118 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~-~--~~~~---- 190 (467)
T PRK09556 118 GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYF-F--DGHV---- 190 (467)
T ss_pred ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhh-c--cCcc----
Confidence 01357778888899999999988888899999999999999999999999999999988776543210 0 0012
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHH
Q 013611 405 LNRAHLDYFYWLLAALSAGGLLAFLYF 431 (439)
Q Consensus 405 l~~~~~~~~f~~~~~l~~l~~~i~~~~ 431 (439)
...|...++++++.+++.++.
T Consensus 191 ------~~~f~~~g~~~~~~~i~~~~~ 211 (467)
T PRK09556 191 ------IGMFIFPSIIALIIGFIGLRY 211 (467)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHh
Confidence 334666666666655555444
No 148
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.19 E-value=0.00019 Score=73.55 Aligned_cols=144 Identities=14% Similarity=0.061 Sum_probs=92.8
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.+...+...+...+..|+.+.+.+++. +++.+.++.++.+++.+...+....
T Consensus 65 ~g~~~~~~~i~~~~~~~~~G~l~Dr~g-----------~k~~l~~~~~~~~i~~~~~~~~~~~----------------- 116 (452)
T PRK11273 65 LGFALSGISIAYGFSKFIMGSVSDRSN-----------PRVFLPAGLILAAAVMLFMGFVPWA----------------- 116 (452)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccC-----------CchhHHHHHHHHHHHHHHHHhhhcc-----------------
Confidence 345556666666777777777655333 3345677777777777766654210
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhh-hhHHHhhhhccccCCCCCCCCCC
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFL-SSILVSIINEATSRDGGDSWFAD 403 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~i-g~~l~~~~~~~~~~~~~~~~~~~ 403 (439)
..+.+.+++..++.|++++...+.....+.+..|++.||+++|+++...++|+.+ ++.+....... .+|
T Consensus 117 -~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~------~gw--- 186 (452)
T PRK11273 117 -TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF------NDW--- 186 (452)
T ss_pred -cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh------ccH---
Confidence 1245566777788999998887766677888899999999999999999998754 44432222210 122
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611 404 NLNRAHLDYFYWLLAALSAGGLLAFLYFAK 433 (439)
Q Consensus 404 ~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~ 433 (439)
...|++.++++++..++.++..+
T Consensus 187 -------~~~f~i~~~~~~~~~~l~~~~~~ 209 (452)
T PRK11273 187 -------HAALYMPAFAAILVALFAFAMMR 209 (452)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHcc
Confidence 45666666666665555444433
No 149
>PRK03633 putative MFS family transporter protein; Provisional
Probab=98.18 E-value=0.00019 Score=71.69 Aligned_cols=113 Identities=15% Similarity=0.117 Sum_probs=89.4
Q ss_pred cchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC
Q 013611 244 PAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNV 323 (439)
Q Consensus 244 ~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (439)
..++..+...+...+..|+.+.+.+++.+| +.+.++.++.++++....+.
T Consensus 42 ~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k-----------~~~~~~~~~~~~~~~~~~~~------------------- 91 (381)
T PRK03633 42 QVGVVSSSYFTGNLVGTLLAGYVIKRIGFN-----------RSYYLASLIFAAGCAGLGLM------------------- 91 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHh-------------------
Confidence 356777777778788788877776544433 45677888888777766654
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611 324 TIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN 389 (439)
Q Consensus 324 ~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~ 389 (439)
.+.+.+++..++.|++.+...+.....+.+..|++.|++++|.+....++|..+|+.+.+.+.
T Consensus 92 ---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 154 (381)
T PRK03633 92 ---VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVS 154 (381)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 256677788899999999988877777788899999999999999999999999999988775
No 150
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.18 E-value=5.5e-06 Score=69.21 Aligned_cols=87 Identities=20% Similarity=0.237 Sum_probs=76.4
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI 109 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i 109 (439)
.+.+.+.+.+.+.|++.+...|...+...|.+|+++ |++++++.+...++|..+|+.+++++.+..+|++.|.+
T Consensus 49 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 122 (141)
T TIGR00880 49 SNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLF 122 (141)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHH
Confidence 356677888999999999999999999999999877 99999999999999999999999999998999999998
Q ss_pred HHHHHHHHHHHHH
Q 013611 110 PCAFMVAALVLFL 122 (439)
Q Consensus 110 ~~~~~~i~~~l~~ 122 (439)
.++..++..+..+
T Consensus 123 ~~~~~~~~~~~~~ 135 (141)
T TIGR00880 123 LAILALAAFILLA 135 (141)
T ss_pred HHHHHHHHHHHHh
Confidence 8866666655443
No 151
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=98.17 E-value=0.00013 Score=73.29 Aligned_cols=111 Identities=13% Similarity=0.140 Sum_probs=88.8
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.++..+.+.+...+..|+.+++.+++ ++++.+..|..+.+++.+..++.+
T Consensus 46 ~g~~~s~~~~~~~l~~~~~g~l~dr~-----------G~r~~l~~~~~l~~~~~~~~~~a~------------------- 95 (393)
T PRK09705 46 AALLTALPVVTMGGLALAGSWLHQHV-----------SERRSVAISLLLIAVGALMRELYP------------------- 95 (393)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHh-----------CchHHHHHHHHHHHHHHHHHHHCc-------------------
Confidence 46667777777788777777776543 334577889999999988887652
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN 389 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~ 389 (439)
+.+.++...++.|+|++...+...+.+.+..| ++|+.++|++......|..+|+.+.+.+.
T Consensus 96 ---~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~ 156 (393)
T PRK09705 96 ---QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLV 156 (393)
T ss_pred ---chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788899999999988888788888777 77999999999999999999999888765
No 152
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.16 E-value=0.00012 Score=73.18 Aligned_cols=89 Identities=19% Similarity=0.210 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCccc
Q 013611 328 SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNR 407 (439)
Q Consensus 328 ~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~ 407 (439)
+.++++...++.|+|++... +....+.+..|+++|++++++......+|..+++.+...+.+. .+|
T Consensus 78 ~~~~l~~~R~l~G~g~~~~~-~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~------~gW------- 143 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPFLL-NAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA------GGL------- 143 (368)
T ss_pred cHHHHHHHHHHHHhHhHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------cch-------
Confidence 57788899999999999754 4445678899999999999999999999999999888877532 134
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611 408 AHLDYFYWLLAALSAGGLLAFLYFAK 433 (439)
Q Consensus 408 ~~~~~~f~~~~~l~~l~~~i~~~~~~ 433 (439)
...|...++++++..++.++..+
T Consensus 144 ---r~~f~~~~~l~~~~~~~~~~~lp 166 (368)
T TIGR00903 144 ---QLLIIPIAAVAAAGIILVLAALP 166 (368)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHcC
Confidence 56777778887777666555544
No 153
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.14 E-value=2e-05 Score=84.28 Aligned_cols=179 Identities=12% Similarity=0.042 Sum_probs=111.7
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHH--HHHHHh---------
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIK--RLETAK--------- 313 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~--~~~~~~--------- 313 (439)
.+++.+.+.+...+..++.+++.+ |. ++++.+.+|.++++++.++.++.+-. .|+...
T Consensus 70 ~G~i~s~~~i~~~~~~i~v~~~~~----r~-------~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~ 138 (633)
T TIGR00805 70 SGLINGSYEIGNLLLIIFVSYFGT----KL-------HRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS 138 (633)
T ss_pred ceeeeehhhHHHHHHHHHHHHhhc----cc-------CcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence 456667777777777766666543 32 34567789999999998888766421 111000
Q ss_pred --hhCCCCCCC--------------CCC--cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhh
Q 013611 314 --EYGLIDKPN--------------VTI--PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLG 375 (439)
Q Consensus 314 --~~~~~~~~~--------------~~~--~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~ 375 (439)
+..+|.... ... ...+..+++..+++|+|+....+....++.+.+|++.|+.+.|+++....
T Consensus 139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~ 218 (633)
T TIGR00805 139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV 218 (633)
T ss_pred ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence 001121000 000 11345567889999999999998888999999999999999999999999
Q ss_pred hhhhhhhHHHhhhhccccCC-----CCCCCCCCCccc-chhhHHHHHHHHHHHHHHHHHHHHhcc
Q 013611 376 VGGFLSSILVSIINEATSRD-----GGDSWFADNLNR-AHLDYFYWLLAALSAGGLLAFLYFAKS 434 (439)
Q Consensus 376 iG~~ig~~l~~~~~~~~~~~-----~~~~~~~~~l~~-~~~~~~f~~~~~l~~l~~~i~~~~~~~ 434 (439)
+|..+|+.+++.+.+....- +....-+++..+ +..+..|.+.++++++.++.++++.++
T Consensus 219 iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~ 283 (633)
T TIGR00805 219 FGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKA 283 (633)
T ss_pred hhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 99999999998876421000 000000001111 223344777777777776666555443
No 154
>PRK03699 putative transporter; Provisional
Probab=98.13 E-value=0.00023 Score=71.49 Aligned_cols=136 Identities=12% Similarity=0.117 Sum_probs=95.2
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611 246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI 325 (439)
Q Consensus 246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (439)
++......+...+..++.+++.+++.+ ++.+..+.++.+++..+..+.
T Consensus 45 g~~~s~~~~~~~i~~~~~g~l~dr~g~-----------r~~~~~~~~~~~i~~~l~~~~--------------------- 92 (394)
T PRK03699 45 SNTFTFLNAGILISIFLNAWLMEIIPL-----------KRQLIFGFALMILAVAGLMFS--------------------- 92 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhH-----------HHHHHHHHHHHHHHHHHHHHc---------------------
Confidence 445556666667777777776554333 345666777777776666543
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCc
Q 013611 326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNL 405 (439)
Q Consensus 326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l 405 (439)
.+.+++++..++.|++.+...+.....+.+..|++.|+.+++..+...++|+.+++.+.+.+....
T Consensus 93 -~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------------- 158 (394)
T PRK03699 93 -HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARS------------- 158 (394)
T ss_pred -chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------
Confidence 246667778899999999887777788889999999999999999999999999998887664210
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHH
Q 013611 406 NRAHLDYFYWLLAALSAGGLLAFL 429 (439)
Q Consensus 406 ~~~~~~~~f~~~~~l~~l~~~i~~ 429 (439)
.+..+.|...+++.++..++.+
T Consensus 159 --~gw~~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK03699 159 --IEWYWVYACIGLVYVAIFILTL 180 (394)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHH
Confidence 1225566666666666544433
No 155
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.13 E-value=7.3e-05 Score=77.55 Aligned_cols=143 Identities=10% Similarity=0.054 Sum_probs=96.9
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611 246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI 325 (439)
Q Consensus 246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (439)
.++.........+..++.+++.|+ + ++.++.+.+|.++.+++.+.+.+..
T Consensus 53 ~~i~~~~~~~~~~~~~~~G~laDr----~------~G~r~~~~~g~~~~~~g~~~~~~~~-------------------- 102 (489)
T PRK10207 53 FITFGAFAALVYGLISIGGYVGDH----L------LGTKRTIVLGAIVLAIGYFMTGMSL-------------------- 102 (489)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhhh----c------cchHHHHHHHHHHHHHHHHHHHHhc--------------------
Confidence 344444444555555666776543 1 2344677889998888887777542
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChh--hHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCC
Q 013611 326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE--LKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFAD 403 (439)
Q Consensus 326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~--~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~ 403 (439)
.+...+.+..+++++|+++..++...++.++.|++ .|+.+.+.+.+..++|..+|+.+.+.+.+.
T Consensus 103 -~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~------------ 169 (489)
T PRK10207 103 -LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADK------------ 169 (489)
T ss_pred -cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHh------------
Confidence 11122446678889999999888889999999877 558899999999999999999999988642
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHHhccC
Q 013611 404 NLNRAHLDYFYWLLAALSAGGLLAFLYFAKSY 435 (439)
Q Consensus 404 ~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~ 435 (439)
.++.+.|+..++..+++.+.+....+++
T Consensus 170 ----~gw~~~F~i~~i~~~~~~~~~~~~~~~~ 197 (489)
T PRK10207 170 ----FGYSVTYNLCGAGLIIALLVYFACRGMV 197 (489)
T ss_pred ----hChHHHHHHHHHHHHHHHHHHHHcchhh
Confidence 1235567665554444554555544333
No 156
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.13 E-value=0.00038 Score=70.56 Aligned_cols=115 Identities=10% Similarity=0.033 Sum_probs=91.4
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.+++.....+...+..+..+++.+++ +.++.+.+|.++.+++..+......
T Consensus 40 ~g~l~s~~~~g~~i~~~~~g~l~~r~-----------G~r~~~~~g~~l~~~g~~l~~~~~~------------------ 90 (410)
T TIGR00885 40 AALVQSAFYGGYFIMAIPAAIFMKKL-----------SYKAGILLGLFLYALGAFLFWPAAE------------------ 90 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-----------CchHHHHHHHHHHHHHHHHHHHHHh------------------
Confidence 46677777888888887777765433 3345778888888888776544321
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN 389 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~ 389 (439)
..+.++++...++.|+|.++..+..+.++.+..|++.+++.+++.+...++|..+|+.+.+.+.
T Consensus 91 -~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 91 -IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred -hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1256677788899999999999888889999999999999999999999999999999988774
No 157
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.12 E-value=0.00011 Score=72.94 Aligned_cols=138 Identities=20% Similarity=0.187 Sum_probs=99.5
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611 246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI 325 (439)
Q Consensus 246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (439)
+++..+..+...+..++.+.+.+ |. ++++.+..+.++.+++.......
T Consensus 29 ~~~~~~~~~~~~~~~~~~g~l~d----~~-------g~~~~~~~~~~~~~i~~~~~~~~--------------------- 76 (377)
T PRK11102 29 QMTLSAYILGFAIGQLFYGPMAD----SF-------GRKPVILGGTLVFALAAVACALA--------------------- 76 (377)
T ss_pred HHHHHHHHHHHHHHHHhhchHHh----hc-------CChHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 44556666666676777666654 32 23346677877777777766654
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCc
Q 013611 326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNL 405 (439)
Q Consensus 326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l 405 (439)
.+.+.++...++.|++.....+.....+.+..|++.|++++++++....+|..+++.+.+.+.+..
T Consensus 77 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------------- 142 (377)
T PRK11102 77 -QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF------------- 142 (377)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------------
Confidence 245667777889999999888888889999999999999999999999999999999988775321
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHh
Q 013611 406 NRAHLDYFYWLLAALSAGGLLAFLYFA 432 (439)
Q Consensus 406 ~~~~~~~~f~~~~~l~~l~~~i~~~~~ 432 (439)
+....|+..++++++..+......
T Consensus 143 ---~~~~~~~~~~~~~~~~~~~~~~~~ 166 (377)
T PRK11102 143 ---SWHAIFWVLALAAILAAALVFFFI 166 (377)
T ss_pred ---ChHHHHHHHHHHHHHHHHHHHHhC
Confidence 224566666666666655544443
No 158
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.10 E-value=2.7e-05 Score=76.85 Aligned_cols=139 Identities=14% Similarity=0.112 Sum_probs=99.8
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.+++..+..+...+..++.+++.+++.+ ++.+.++.++.+++.++..+..
T Consensus 32 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~-----------r~~~~~~~~~~~~~~~~~~~~~------------------- 81 (379)
T TIGR00881 32 LGLLLSSFSIAYGISKFVMGSVSDRSNP-----------RVFLPIGLILCAIVNLFFGFST------------------- 81 (379)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHhhCC-----------eehhHHHHHHHHHHHHHHHHhh-------------------
Confidence 3556667777777777777776654333 3456778877877777766552
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhH-HHhhhhccccCCCCCCCCCC
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSI-LVSIINEATSRDGGDSWFAD 403 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~-l~~~~~~~~~~~~~~~~~~~ 403 (439)
+.+.+++..++.|++.+...+....++.+..|++.|++++|+++....+|..+++. +...+.+. .+|
T Consensus 82 ---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~--- 149 (379)
T TIGR00881 82 ---SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL------YSW--- 149 (379)
T ss_pred ---hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc------CCc---
Confidence 56677788899999999998888899999999999999999999999999999994 44444321 122
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHHh
Q 013611 404 NLNRAHLDYFYWLLAALSAGGLLAFLYFA 432 (439)
Q Consensus 404 ~l~~~~~~~~f~~~~~l~~l~~~i~~~~~ 432 (439)
...|+..++++++..++.+...
T Consensus 150 -------~~~~~~~~~~~~~~~~~~~~~~ 171 (379)
T TIGR00881 150 -------HWVFIVPGIIAIIVSLICFLLL 171 (379)
T ss_pred -------hhHHHHHHHHHHHHHHHHheee
Confidence 3456666666666555554443
No 159
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.10 E-value=0.00041 Score=75.09 Aligned_cols=112 Identities=15% Similarity=0.145 Sum_probs=86.5
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.+++.++..+..++..++.+++.+++.+| +.+.++.++.+++.++..+.
T Consensus 204 ~g~l~s~~~lG~iiG~li~G~LsDR~GRR-----------~~lii~lil~~i~~ll~afa-------------------- 252 (742)
T TIGR01299 204 KGMLGLIVYLGMMVGAFFWGGLADKLGRK-----------QCLLICLSVNGFFAFFSSFV-------------------- 252 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHH--------------------
Confidence 35666777777777777777766544333 35566666666666555543
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN 389 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~ 389 (439)
.+.+++++..++.|+|.+...+....++.+..|++.||..+++......+|.++++.+...+.
T Consensus 253 --~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il 315 (742)
T TIGR01299 253 --QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAII 315 (742)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 246677888899999999998999999999999999999999999999999999988776654
No 160
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.10 E-value=5.9e-05 Score=74.46 Aligned_cols=115 Identities=12% Similarity=0.169 Sum_probs=95.6
Q ss_pred CCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCh
Q 013611 281 ITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPK 360 (439)
Q Consensus 281 ~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~ 360 (439)
.+++.-+..|+++.++.++++++.+ +.+.+.+..++.|..-+.-+|+....+.+--|+
T Consensus 91 ~npr~fm~~gLilsai~nil~Gfs~----------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr 148 (448)
T COG2271 91 SNPRYFMAFGLILSAIVNILFGFSP----------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSR 148 (448)
T ss_pred CCCceeehHHHHHHHHHHHHHhhhh----------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCc
Confidence 4788889999999999999998763 677777888888888888889998999999999
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhHHH--hhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611 361 ELKSFGLSIYMSVLGVGGFLSSILV--SIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAK 433 (439)
Q Consensus 361 ~~~g~~~gl~~~~~~iG~~ig~~l~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~ 433 (439)
++||+..++|+...|+|+.+.+.+. +.+... ++....|++-++++++.+++.++..|
T Consensus 149 ~eRG~~~siWn~shNiGGal~~~~~~la~~~~~----------------~~w~~~f~~pgiiaiival~~~~~~r 207 (448)
T COG2271 149 KERGTWWSIWNTSHNIGGALAPLVALLAFFAFH----------------GGWRAAFYFPGIIAIIVALILLFLLR 207 (448)
T ss_pred cccCceEEEehhhhhcccchHHHHHHHHHHHhc----------------cchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999998 655421 12356788888888888777776655
No 161
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.08 E-value=0.00018 Score=72.76 Aligned_cols=119 Identities=13% Similarity=0.009 Sum_probs=87.0
Q ss_pred cchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC
Q 013611 244 PAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNV 323 (439)
Q Consensus 244 ~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (439)
..++......+..++..|+.+.+.+++.+| +.+.++.++.++++.........
T Consensus 53 ~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~-----------~~l~~~~~~~~~~~~~~~~~~~~---------------- 105 (417)
T PRK10489 53 QVGLSVTLTGGAMFIGLMVGGVLADRYDRK-----------KLILLARGTCGLGFIGLALNAFL---------------- 105 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhhcCCc-----------eEEEehHHHHHHHHHHHHHHHHc----------------
Confidence 346677777888888888888876654433 23445666666655544432100
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611 324 TIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE 390 (439)
Q Consensus 324 ~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~ 390 (439)
...+.+++.+..++.|++.+...+.....+.+.+|++.++++.++.....++|..+|+.+.+.+.+
T Consensus 106 -~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~ 171 (417)
T PRK10489 106 -PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIA 171 (417)
T ss_pred -CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence 012456677778888999988888888899999999999999999999999999999999987753
No 162
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.07 E-value=0.00023 Score=70.23 Aligned_cols=112 Identities=17% Similarity=0.092 Sum_probs=83.3
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.+++..+..+...+..++.+.+.+++. .++.+.++.++.+++.++..+..
T Consensus 39 ~~~~~~~~~~~~~~~~~~~g~l~dr~g-----------~r~~~~~~~~~~~i~~~~~~~~~------------------- 88 (366)
T TIGR00886 39 LGNLVAVPVLAGAVLRIILGFLVDKFG-----------PRYTTTLSLLLLAIPCLWAGLAV------------------- 88 (366)
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHhC-----------chHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 456677777777888888887765443 33466778888888877766542
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN 389 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~ 389 (439)
.+.+.+++..++.|++..... .....+.+..|++.|+++++++....++|..+++.+.+.+.
T Consensus 89 --~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~ 150 (366)
T TIGR00886 89 --QSYSVLLLLRLFIGIAGGSFA-SCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPII 150 (366)
T ss_pred --hhHHHHHHHHHHHHHhchhhH-hHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 146667778888999876554 45578899999999999999999888888888877776554
No 163
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.05 E-value=0.00043 Score=70.09 Aligned_cols=112 Identities=15% Similarity=0.130 Sum_probs=88.0
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.++...+..+...+..|+.+.+.+++ ++++.+.++.++.+++.....+..
T Consensus 55 ~~~~~~~~~~~~~l~~~~~g~l~dr~-----------g~r~~l~~~~~~~~~~~~~~~~~~------------------- 104 (426)
T PRK12307 55 GAFLATAAFIGRPFGGALFGLLADKF-----------GRKPLMMWSIVAYSVGTGLSGLAS------------------- 104 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-----------CChHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 45566677777777777777766533 334566778888888877666552
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN 389 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~ 389 (439)
+.+.+.+..++.|+|++...+....++.+..|++.|++++|++....++|..+++.+.+.+.
T Consensus 105 ---~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~ 166 (426)
T PRK12307 105 ---GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA 166 (426)
T ss_pred ---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHc
Confidence 46677888899999999988888889999999999999999999999999999988877664
No 164
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.05 E-value=0.00012 Score=74.57 Aligned_cols=111 Identities=16% Similarity=0.070 Sum_probs=86.3
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.+++..+..+...+..|+.+.+.+++. +++.+.++.++.+++..+......
T Consensus 73 ~~~~~~~~~~~~~i~~~~~g~l~d~~g-----------rr~~~~~~~~~~~~~~~~~~~~~~------------------ 123 (481)
T TIGR00879 73 WGLVVSIFLVGGFIGALFAGWLSDRFG-----------RKKSLLIIALLFVIGAILMGLAAF------------------ 123 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhhh-----------hHHHHHHHHHHHHHHHHHHHHhcc------------------
Confidence 456667777777777777777665433 334567777777777666654321
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHH
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILV 385 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~ 385 (439)
..+.+.+++..++.|+|.+...+....++.+..|++.|+.++++++...++|..+++.+.
T Consensus 124 -~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 124 -ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred -ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 134567788889999999999888889999999999999999999999999999999887
No 165
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=98.04 E-value=1.3e-05 Score=80.62 Aligned_cols=90 Identities=11% Similarity=0.025 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHH
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIP 110 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~ 110 (439)
+...+++.+++.|+|.++..|...+...+.+|+++ |++++++++...++|..+++.+.|++.+..||++.|.+.
T Consensus 301 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 374 (399)
T PRK05122 301 SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAA 374 (399)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 44556777889999999999988888888888765 999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhcCc
Q 013611 111 CAFMVAALVLFLLGTK 126 (439)
Q Consensus 111 ~~~~~i~~~l~~~~~~ 126 (439)
++..+++.+..++.++
T Consensus 375 ~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 375 ALAALLGLALTWLLYR 390 (399)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 8877777766554434
No 166
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.04 E-value=7.4e-05 Score=76.82 Aligned_cols=140 Identities=16% Similarity=0.162 Sum_probs=98.4
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611 246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI 325 (439)
Q Consensus 246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (439)
+.+.....+..++..++.+.+.+++.+ ++.+.++.++.+++.++.....
T Consensus 79 g~~~s~~~~~~~~~~~~~g~l~dr~g~-----------r~~l~~~~~~~~~~~~~~~~~~-------------------- 127 (465)
T TIGR00894 79 GLILSSHFYGQIIIQIPVGYLAGKYVF-----------KWSIGIGMFLSSVISIVIPWAA-------------------- 127 (465)
T ss_pred hHHHHHHHHHHHHHHcchHHHHHHhCc-----------chhhHHHHHHHHHHHHHHHHHH--------------------
Confidence 445555666666666676666554333 3355666666666655544331
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCc
Q 013611 326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNL 405 (439)
Q Consensus 326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l 405 (439)
..+.+++++..+++|++++...+....++.+..|+++||+++|+.....++|..+++.+.+.+.+.. .+|
T Consensus 128 ~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~-----~gw----- 197 (465)
T TIGR00894 128 GGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESW-----GGW----- 197 (465)
T ss_pred HcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----CCC-----
Confidence 1245667888899999999999999999999999999999999999999999999999998775320 023
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHH
Q 013611 406 NRAHLDYFYWLLAALSAGGLLAFLYF 431 (439)
Q Consensus 406 ~~~~~~~~f~~~~~l~~l~~~i~~~~ 431 (439)
...|.+.++++++..++++..
T Consensus 198 -----~~~f~i~~~~~~~~~~~~~~~ 218 (465)
T TIGR00894 198 -----PMIFYVFGIVGCAWSLLWFVF 218 (465)
T ss_pred -----CeehhhhhHHHHHHHHHHHHH
Confidence 345666666666665555444
No 167
>PRK11043 putative transporter; Provisional
Probab=98.03 E-value=0.0007 Score=68.02 Aligned_cols=138 Identities=13% Similarity=0.051 Sum_probs=95.7
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.++..++..+...+..++.+.+.+++ ++++.+..+.++.+++.....+.
T Consensus 43 ~g~~~s~~~~~~~~~~~~~g~l~dr~-----------g~r~~~~~~~~~~~~~~~~~~~~-------------------- 91 (401)
T PRK11043 43 VSASLSLFLAGFALGQLLWGPLSDRY-----------GRKPVLLAGLSLFALGSLGMLWV-------------------- 91 (401)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHhhc-----------CCcHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 34555666666667767766665433 23345666776776666655543
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN 404 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~ 404 (439)
.+.+++++..++.|+|.....+.....+.+..|++.++.+.+..+...++|..+++.+.+.+.+.
T Consensus 92 --~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~------------- 156 (401)
T PRK11043 92 --ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH------------- 156 (401)
T ss_pred --cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------
Confidence 25666777788899988877777777888999999999999999988999999999998877532
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHH
Q 013611 405 LNRAHLDYFYWLLAALSAGGLLAFLYF 431 (439)
Q Consensus 405 l~~~~~~~~f~~~~~l~~l~~~i~~~~ 431 (439)
.+....|+..+++.++..++.+..
T Consensus 157 ---~g~~~~~~~~~~~~~~~~~~~~~~ 180 (401)
T PRK11043 157 ---FGWQAIFATLFAITLLLILPTLRL 180 (401)
T ss_pred ---CChHHHHHHHHHHHHHHHHHHHHc
Confidence 122456666666666665554433
No 168
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=98.02 E-value=0.00014 Score=73.84 Aligned_cols=84 Identities=13% Similarity=0.130 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHH
Q 013611 336 YLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYW 415 (439)
Q Consensus 336 ~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~ 415 (439)
.++.|++.-.......+.-.+..-+..+|+++|++.....++..+||.+....... .++.+.+.
T Consensus 395 i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~----------------~g~~~v~~ 458 (488)
T KOG2325|consen 395 IVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTL----------------SGPRPVWI 458 (488)
T ss_pred hheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHh----------------cCccHHHH
Confidence 35567777767778878888999999999999999999999999999888877543 23345555
Q ss_pred HHHHHHHHHHHHHHHHhccC
Q 013611 416 LLAALSAGGLLAFLYFAKSY 435 (439)
Q Consensus 416 ~~~~l~~l~~~i~~~~~~~~ 435 (439)
...++.++.........+|.
T Consensus 459 ~~~~~~l~~~~l~~~~~~r~ 478 (488)
T KOG2325|consen 459 ILLCLLLVVAALWIVFLKRL 478 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 55555555555555555544
No 169
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.01 E-value=0.00034 Score=68.88 Aligned_cols=137 Identities=13% Similarity=0.109 Sum_probs=96.4
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.++..++..+...+..|+.+.+.+++.+| +.+.++.++.+++.....+.+
T Consensus 40 ~g~~~s~~~~~~~~~~~~~G~l~d~~G~r-----------~~~~~~~~~~~~~~~~~~~~~------------------- 89 (377)
T TIGR00890 40 VAIWFTLLLIGLAMSMPVGGLLADKFGPR-----------AVAMLGGILYGLGFTFYAIAD------------------- 89 (377)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHcCcc-----------chhHHhHHHHHHHHHHHHHHH-------------------
Confidence 45667777778888888888876654333 345677888888877666553
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN 404 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~ 404 (439)
+.+.+.+...+.|++++...+.....+.+..| ++|+.+++++....++|..+++.+.+.+.+.
T Consensus 90 ---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------------- 152 (377)
T TIGR00890 90 ---SLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINL------------- 152 (377)
T ss_pred ---HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhc-------------
Confidence 46667777789999999877666667777777 4699999999999999988766666554321
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHH
Q 013611 405 LNRAHLDYFYWLLAALSAGGLLAFLYF 431 (439)
Q Consensus 405 l~~~~~~~~f~~~~~l~~l~~~i~~~~ 431 (439)
.+....|...++++++..+..+..
T Consensus 153 ---~~~~~~f~~~~~~~~~~~~~~~~~ 176 (377)
T TIGR00890 153 ---EGVPAAFIYMGIIFLLVIVLGAFL 176 (377)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHHh
Confidence 123556777777776666554444
No 170
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.01 E-value=0.0005 Score=69.16 Aligned_cols=110 Identities=12% Similarity=0.080 Sum_probs=85.9
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.+++.....+...++.|+.+.+.|++.+ ++.+.++.++.+++.+.+....
T Consensus 40 ~~~~~~~~~l~~~l~~~~~G~laDr~gr-----------r~vl~~~~~~~~~~~~~~~~~~------------------- 89 (393)
T PRK11195 40 QPLLQMFFVLAYIVLAPFVGAFADSFPK-----------GRVMFIANGIKLLGCLLMLFGI------------------- 89 (393)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhccCC-----------chhhHHHHHHHHHHHHHHHHHH-------------------
Confidence 4677778888888888888887654433 3455666666666655444321
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE 390 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~ 390 (439)
+. ++..+++|++++...|...+.+.+.+|++.|++++|+.....++|..+||.+++.+.+
T Consensus 90 ---~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~ 149 (393)
T PRK11195 90 ---HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD 149 (393)
T ss_pred ---HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 3456789999999999999999999999999999999999999999999999998863
No 171
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.01 E-value=0.00071 Score=67.80 Aligned_cols=136 Identities=15% Similarity=0.090 Sum_probs=94.2
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611 246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI 325 (439)
Q Consensus 246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (439)
++...+..+..++..|+.+.+.+++. +++.+.++.++.+++.......
T Consensus 46 ~~~~~~~~~~~~~~~~~~G~l~Dr~g-----------rr~~~~~~~~~~~~~~~~~~~~--------------------- 93 (394)
T PRK11652 46 QAVMAAYLLTYGLSQLFYGPLSDRVG-----------RRPVILVGMSIFILGTLVALFA--------------------- 93 (394)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHhcC-----------ChHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 45556666677777777777665332 3345666777777666555432
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCc
Q 013611 326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNL 405 (439)
Q Consensus 326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l 405 (439)
.+.+++++..++.|++.+...+...++..+..|++.++.+++.+.....+|..+++.+.+.+.+.. +|
T Consensus 94 -~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~------g~----- 161 (394)
T PRK11652 94 -HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLF------GW----- 161 (394)
T ss_pred -ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------Ch-----
Confidence 246667788889999988877777778888899999999999999999999999999988775321 22
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHH
Q 013611 406 NRAHLDYFYWLLAALSAGGLLAFLY 430 (439)
Q Consensus 406 ~~~~~~~~f~~~~~l~~l~~~i~~~ 430 (439)
...|+..++++++..++...
T Consensus 162 -----~~~f~~~~~~~~~~~~~~~~ 181 (394)
T PRK11652 162 -----RACYLFLLLLGAGVTFSMAR 181 (394)
T ss_pred -----HHHHHHHHHHHHHHHHHHHH
Confidence 45566666555554444333
No 172
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=98.01 E-value=0.00014 Score=74.29 Aligned_cols=265 Identities=15% Similarity=0.080 Sum_probs=147.3
Q ss_pred CCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHhcCcc
Q 013611 48 GHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKT 127 (439)
Q Consensus 48 ~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~~~~~~i~~~l~~~~~~~ 127 (439)
.+.....+.++|...+++ |...+++.....-.|..+||.+++++.+.+|+-..|.++.+..+++.+-.++..++
T Consensus 128 ~~~s~~~a~vadis~~~~------R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~E 201 (463)
T KOG2816|consen 128 AIFSVGFAYVADISSEEE------RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPE 201 (463)
T ss_pred hhhhhhhhheeeccchhH------HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccc
Confidence 355666777888888776 99999999999999999999999999999999999999998888877655444443
Q ss_pred eeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHH
Q 013611 128 YRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIP 207 (439)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~ 207 (439)
-..++.+. +.+.. . ....+...+-.... ... .....+.|..+.+..
T Consensus 202 sl~~~~~~-~~~~~-----------~----------~~~~~~~~~~~~~~----------~~~--~~~~~~~r~~l~l~l 247 (463)
T KOG2816|consen 202 SLQEKERS-DATLR-----------E----------LTPGSLDSSHVADA----------FQS--LTKVGPDRLLLLLLL 247 (463)
T ss_pred ccCccccc-ccccc-----------c----------cCCCcccchhhhhh----------hhh--hcccCCCccchHHHH
Confidence 22221110 00000 0 00000000000000 000 000111111111111
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCc-cccchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhH
Q 013611 208 IWATCLVYAIVFAQYTTFFTKQGATMDRTITRSI-KIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQR 286 (439)
Q Consensus 208 ~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~-~~~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~ 286 (439)
. ....++....+..... ..+.+..++ + ....+.+....++.-.+ .+.+..|.+.+. +...+.
T Consensus 248 ~--~~~~~~~~~~~~~~~~---~~yl~~~f~--w~~~~~s~~~~~~~~~~~i----~~l~~~~~l~~~------l~~~~~ 310 (463)
T KOG2816|consen 248 V--AFLSSLPEAGGASDVL---LLYLKAKFG--WNKKEFSDLLSLVSILGII----SQLLLLPLLSSI------LGEKRL 310 (463)
T ss_pred H--HHHHHHHHhcCceeEE---EEEEeeecC--cCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH------HhhhhH
Confidence 1 1111111110000000 011122221 1 12223333333333322 223333333332 122236
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHH
Q 013611 287 IGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFG 366 (439)
Q Consensus 287 i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~ 366 (439)
+.+|++.-.+...+.++.. ..| +.....+....-....|...+++.++++++.+|.+
T Consensus 311 i~lGl~~~~~~~~~~af~~----------------------~~w-~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v 367 (463)
T KOG2816|consen 311 ISLGLLSEFLQLLLFAFAT----------------------ETW-MMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKV 367 (463)
T ss_pred hhHHHHHHHHHHHHHHHhc----------------------cch-hhhHHHHHHHhhcchhHHHHhHHHhhcccccccch
Confidence 7788888888888888763 233 33333444445556788888999999999999999
Q ss_pred HHHHHHHhhhhhhhhhHHHhhhhccc
Q 013611 367 LSIYMSVLGVGGFLSSILVSIINEAT 392 (439)
Q Consensus 367 ~gl~~~~~~iG~~ig~~l~~~~~~~~ 392 (439)
+++.....++.+.+++.+.+.+...+
T Consensus 368 ~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 368 FGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99999999999999999999886554
No 173
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=98.00 E-value=0.00093 Score=67.89 Aligned_cols=109 Identities=12% Similarity=0.109 Sum_probs=84.6
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCc
Q 013611 247 SLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIP 326 (439)
Q Consensus 247 ~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (439)
.+...-.....+.....+.+.+++ +.++.+.++++..++..++.++..
T Consensus 66 ~I~s~F~ysYal~qIp~GlLaDrl-----------G~K~vL~l~~l~Wsl~t~L~~fa~--------------------- 113 (511)
T TIGR00806 66 EIIPVLPYSHLAVLVPVFLLTDYL-----------RYKPVLVLQALSFVCVWLLLLLGT--------------------- 113 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh-----------CchHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 333444444555555555554433 344567778877777777777652
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611 327 TSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN 389 (439)
Q Consensus 327 ~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~ 389 (439)
+.+.+.+..++.|++|+... +...++++..|+++|++++|+++....+|.++++.+++.+.
T Consensus 114 -Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~ 174 (511)
T TIGR00806 114 -SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV 174 (511)
T ss_pred -HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778899999999999999 88899999999999999999999999999999999999843
No 174
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=97.99 E-value=0.00036 Score=72.66 Aligned_cols=116 Identities=9% Similarity=0.080 Sum_probs=82.2
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChh-
Q 013611 283 MLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE- 361 (439)
Q Consensus 283 ~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~- 361 (439)
.++.+.+|.++.+++..++.+.. .+.+++.+..++.++|.++..+....++.+..|++
T Consensus 87 ~r~~~~~g~~~~~ig~~l~~~~~---------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~ 145 (500)
T PRK09584 87 TKRVIMLGAIVLAIGYALVAWSG---------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDD 145 (500)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc---------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCc
Confidence 34567788888888876666431 12344556678889999998888878888888754
Q ss_pred -hHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhccC
Q 013611 362 -LKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSY 435 (439)
Q Consensus 362 -~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~ 435 (439)
.++.++++++...++|..+|+.+.+.+.+. .++.+.|...++..+++.+.++...+.+
T Consensus 146 ~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~----------------~g~~~~F~i~~i~~~i~~i~~~~~~~~~ 204 (500)
T PRK09584 146 PRLDGAFTMYYMSINIGSFFSMLATPWLAAK----------------YGWSVAFALSVVGMLITVVNFAFCQRWV 204 (500)
T ss_pred hhhhhcchHHHHHHHHHHHHHHHHHHHHHHh----------------hCHHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 345678899999999999999999988642 2345667776666666666665554443
No 175
>PRK12382 putative transporter; Provisional
Probab=97.99 E-value=0.00026 Score=70.87 Aligned_cols=120 Identities=10% Similarity=-0.037 Sum_probs=86.0
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.+.+.....+...+..|+.+.+.|++.+| +.+.+|.++.+++.......... . . .
T Consensus 53 ~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~~--------~-----~-~ 107 (392)
T PRK12382 53 VGIAVGIQFLATVLTRGYAGRLADQYGAK-----------RSALQGMLACGLAGLAYLLAAIL--------P-----V-S 107 (392)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHhhcch-----------HHHHHHHHHHHHHHHHHHhhhcc--------c-----c-c
Confidence 45667777888888888888887654433 35566666555543322211100 0 0 0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN 389 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~ 389 (439)
...+.+++++..+++|+|+....+....++.+..|++.|++++|.+....++|..+|+.+++.+.
T Consensus 108 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~ 172 (392)
T PRK12382 108 APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLH 172 (392)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 01256677888899999999988888788899999999999999999999999999999988775
No 176
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=97.98 E-value=0.0015 Score=66.92 Aligned_cols=129 Identities=15% Similarity=0.022 Sum_probs=80.9
Q ss_pred CchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChh
Q 013611 282 TMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE 361 (439)
Q Consensus 282 ~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~ 361 (439)
+.++.+.++.++.++..+..++...+ ...+.+.+++..++.|++ +..++.....+.+..|++
T Consensus 98 G~R~v~~~~~ll~~i~~~~~~~a~~~-----------------~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~ 159 (462)
T PRK15034 98 GGRRWTVFSTAILIIPCVWLGIAVQN-----------------PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKA 159 (462)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHcc-----------------cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHh
Confidence 45567778888887777766654210 013677788888999998 556677778999999999
Q ss_pred hHHHHHHHHHHHhhhhhhhhhHHHhhhh-----ccccCCCCCCCCCCCc--c-cchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611 362 LKSFGLSIYMSVLGVGGFLSSILVSIIN-----EATSRDGGDSWFADNL--N-RAHLDYFYWLLAALSAGGLLAFLYFAK 433 (439)
Q Consensus 362 ~~g~~~gl~~~~~~iG~~ig~~l~~~~~-----~~~~~~~~~~~~~~~l--~-~~~~~~~f~~~~~l~~l~~~i~~~~~~ 433 (439)
+||+++|++....++|..+++.+...+. ... +|-+... + ..+....+++...+.++.++++++..+
T Consensus 160 ~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~------G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~ 233 (462)
T PRK15034 160 KQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFL------GVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMN 233 (462)
T ss_pred HhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh------ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999997666666665555444322 111 1111000 0 112344555666666677766666544
Q ss_pred c
Q 013611 434 S 434 (439)
Q Consensus 434 ~ 434 (439)
.
T Consensus 234 ~ 234 (462)
T PRK15034 234 D 234 (462)
T ss_pred C
Confidence 3
No 177
>PRK03893 putative sialic acid transporter; Provisional
Probab=97.96 E-value=0.0011 Score=68.65 Aligned_cols=111 Identities=14% Similarity=0.122 Sum_probs=85.6
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611 246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI 325 (439)
Q Consensus 246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (439)
+++.....+..++..++.+.+.+++. +++.+.++.++.+++.+...+.
T Consensus 58 ~~~~~~~~~~~~~~~~~~g~l~dr~g-----------~r~~~~~~~~~~~~~~~~~~~~--------------------- 105 (496)
T PRK03893 58 ASLISAAFISRWFGGLLLGAMGDRYG-----------RRLAMVISIVLFSVGTLACGFA--------------------- 105 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 44555566666666667666655332 3345667777777777666654
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611 326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN 389 (439)
Q Consensus 326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~ 389 (439)
.+.+++.+..++.|++.+...+....++.+..|++.|+.++|++....++|+.+++.+.+.+.
T Consensus 106 -~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 168 (496)
T PRK03893 106 -PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV 168 (496)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 256677888899999999988888889999999999999999999999999999999988775
No 178
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=97.96 E-value=0.00078 Score=69.66 Aligned_cols=144 Identities=11% Similarity=0.037 Sum_probs=88.6
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCc
Q 013611 247 SLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIP 326 (439)
Q Consensus 247 ~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (439)
+......+...+..++.+.+.+ |+ ++++.+.++.++.+++.++.++.
T Consensus 75 ~~~~~~~~~~~~~~~~~G~l~d----r~-------G~r~~~~~~~~~~~~~~~~~~~~---------------------- 121 (476)
T PLN00028 75 NAGIASVSGSIFSRLAMGPVCD----LY-------GPRYGSAFLLMLTAPAVFCMSLV---------------------- 121 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----Hh-------CChHHHHHHHHHHHHHHHHHHHh----------------------
Confidence 3344444444455555555554 43 23345566777777776655544
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcc
Q 013611 327 TSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLN 406 (439)
Q Consensus 327 ~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~ 406 (439)
.+.+.+.+..++.|+++....+ ...++.+..|++.||+++|+++...++|..+++.+.+.+........ . .+
T Consensus 122 ~s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~----~---~~ 193 (476)
T PLN00028 122 SSATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAG----A---PS 193 (476)
T ss_pred cCHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C---cc
Confidence 2455566667888999886544 44578899999999999999998888888888777665432110000 0 00
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHH
Q 013611 407 RAHLDYFYWLLAALSAGGLLAFLYF 431 (439)
Q Consensus 407 ~~~~~~~f~~~~~l~~l~~~i~~~~ 431 (439)
..+....|.+.++++++..++.+++
T Consensus 194 ~~gWr~~f~i~g~l~l~~~l~~~~~ 218 (476)
T PLN00028 194 FTAWRIAFFVPGLLHIIMGILVLTL 218 (476)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 0123667877787777766555544
No 179
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=97.95 E-value=0.00091 Score=67.43 Aligned_cols=117 Identities=15% Similarity=0.092 Sum_probs=82.3
Q ss_pred cchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC
Q 013611 244 PAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNV 323 (439)
Q Consensus 244 ~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (439)
..++......+...+..|+.+++.+++. +++.+..+..+.+++.........
T Consensus 49 ~~g~~~~~~~~~~~i~~~~~g~l~dr~g-----------~k~~l~~~~~~~~~~~~~~~~~~~----------------- 100 (402)
T TIGR00897 49 QSASAFTLYGIAAAISAWISGVVAEIIG-----------PLKTMMIGLLLWCVGHAAFIVFGL----------------- 100 (402)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHcC-----------cHHHHHHHHHHHHHHHHHHHHHhc-----------------
Confidence 3456667777777777788777765433 334566777777776544332210
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhh-hhhhHHHhhhh
Q 013611 324 TIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGG-FLSSILVSIIN 389 (439)
Q Consensus 324 ~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~-~ig~~l~~~~~ 389 (439)
...+.+.+....++.|+|.....+.....+.+..|+++|++++|++....++|. .+|+.+.+.+.
T Consensus 101 -~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~ 166 (402)
T TIGR00897 101 -GHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI 166 (402)
T ss_pred -cCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 012455566777888998887777777788889999999999999999999996 57887776654
No 180
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=97.92 E-value=0.00066 Score=67.19 Aligned_cols=140 Identities=9% Similarity=-0.072 Sum_probs=87.7
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHh-HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIG-AGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNV 323 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~-iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (439)
.+++.....+..++..|+.+.+.++..+ ++.+. .+.++.+++..+....
T Consensus 35 ~g~~~~~~~~~~~~~~~~~g~l~Dr~g~-----------r~~~~~~~~~~~~~~~~~~~~~------------------- 84 (375)
T TIGR00899 35 IGLFYTGSAIVGIAVSQLLATRSDYQGD-----------RKGLILFCCLLAALACLLFAWN------------------- 84 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCC-----------chHHHHHHHHHHHHHHHHHHhc-------------------
Confidence 4556666666667777777776553322 23333 3444444444444432
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHH--HHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCC
Q 013611 324 TIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFG--LSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWF 401 (439)
Q Consensus 324 ~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~--~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~ 401 (439)
.+.+++++..++.+.+.....|...+.+.+..|++.|+.. .+......++|..+|+.+.+.+.+.
T Consensus 85 ---~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~---------- 151 (375)
T TIGR00899 85 ---RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG---------- 151 (375)
T ss_pred ---chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh----------
Confidence 2455555556666766666677777777788887777654 6777888889999999998877532
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611 402 ADNLNRAHLDYFYWLLAALSAGGLLAFLYFAK 433 (439)
Q Consensus 402 ~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~ 433 (439)
.+.+..|+..+...++..++.++..+
T Consensus 152 ------~~~~~~f~~~~~~~~~~~~~~~~~~~ 177 (375)
T TIGR00899 152 ------FGFTVMFLTAALAFVLCGVLVWLFLP 177 (375)
T ss_pred ------cccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 12355677777776766666555444
No 181
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=97.91 E-value=0.0006 Score=70.06 Aligned_cols=137 Identities=15% Similarity=0.036 Sum_probs=91.1
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.++..++..+...+..|+.+.+.+++. .++.+..+.++.+++.++.++..
T Consensus 56 ~~~~~s~~~~~~~~~~~~~G~l~dr~g-----------~r~~l~~~~~~~~~~~~~~~~~~------------------- 105 (455)
T TIGR00892 56 TAWISSIMLAVLYAGGPISSILVNRFG-----------CRPVVIAGGLLASLGMILASFSS------------------- 105 (455)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHcC-----------chHHHHhhHHHHHHHHHHHHHhh-------------------
Confidence 345555555556666777776655332 23456677777777776665542
Q ss_pred CcchHHHHHH-HHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCC
Q 013611 325 IPTSVWWLIP-QYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFAD 403 (439)
Q Consensus 325 ~~~~~~~~i~-~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~ 403 (439)
+.+.+.. ..++.|++.+...++....+.+..| +.|++++|+++....+|..+++.+.+.+.+.
T Consensus 106 ---~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~------------ 169 (455)
T TIGR00892 106 ---NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFES------------ 169 (455)
T ss_pred ---hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH------------
Confidence 3444433 3467788888765555566667776 7899999999999999999999998877532
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHH
Q 013611 404 NLNRAHLDYFYWLLAALSAGGLLAFLYF 431 (439)
Q Consensus 404 ~l~~~~~~~~f~~~~~l~~l~~~i~~~~ 431 (439)
.++...|+..++++++..+..++.
T Consensus 170 ----~gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 170 ----FGWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred ----hChHHHHHHHHHHHHHHHHHHHHh
Confidence 123567888887777665554443
No 182
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.90 E-value=0.00045 Score=71.30 Aligned_cols=142 Identities=15% Similarity=0.059 Sum_probs=93.2
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCc
Q 013611 247 SLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIP 326 (439)
Q Consensus 247 ~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (439)
.+.........+..++.+++.|++. +.++.+.+|.++.+++.+++...+
T Consensus 49 ~i~~~~~~~~~l~~ligG~LaDRil----------Grrr~iliG~il~~lg~lll~~~~--------------------- 97 (493)
T PRK15462 49 ELFSAYCSLVYVTPILGGFLADKVL----------GNRMAVMLGALLMAIGHVVLGASE--------------------- 97 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc----------CcHHHHHHHHHHHHHHHHHHHHhh---------------------
Confidence 3444444454555556677665442 233466788888888876554321
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChh--hHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611 327 TSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE--LKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN 404 (439)
Q Consensus 327 ~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~--~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~ 404 (439)
.+..+..+...+..+|.++..++..+++.+..|++ .|.++.++++...++|+.++|.+.+.+.+.
T Consensus 98 ~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~------------- 164 (493)
T PRK15462 98 IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE------------- 164 (493)
T ss_pred cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh-------------
Confidence 11122334444556777777777778888888875 799999999999999999999999988531
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhccC
Q 013611 405 LNRAHLDYFYWLLAALSAGGLLAFLYFAKSY 435 (439)
Q Consensus 405 l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~ 435 (439)
.++.+.|...++.++++.+.++...|++
T Consensus 165 ---~Gw~~~F~iaaigm~l~li~~~~~~~~l 192 (493)
T PRK15462 165 ---YSWAMGFGLAAVGMIAGLVIFLCGNRHF 192 (493)
T ss_pred ---hChHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 2335667776666777777766555554
No 183
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=97.88 E-value=3e-05 Score=78.79 Aligned_cols=86 Identities=10% Similarity=0.192 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHH-HHHHHHHHHHHHHHHHhhhc------ccch
Q 013611 32 IIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWY-FGISFGANSTILVVIYIQDN------LNWA 104 (439)
Q Consensus 32 ~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y-~~~nlG~~ig~~l~g~l~~~------~g~~ 104 (439)
.+.+++..++.|++.+...|+...++.+++|+++ |++++++.+ +..++|.++||.++|++.+. +||+
T Consensus 308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~ 381 (418)
T TIGR00889 308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ 381 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence 4567778899999999999999999999999876 999999997 56789999999999999987 4699
Q ss_pred hhhHHHHHHHHHHHHHHHh
Q 013611 105 LGFGIPCAFMVAALVLFLL 123 (439)
Q Consensus 105 ~~F~i~~~~~~i~~~l~~~ 123 (439)
..|.+.++..++..+++++
T Consensus 382 ~~f~~~~~~~~i~~~l~~~ 400 (418)
T TIGR00889 382 TMWLFFAGYIAILAVLFMI 400 (418)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999887776666655444
No 184
>TIGR00898 2A0119 cation transport protein.
Probab=97.84 E-value=0.00029 Score=73.19 Aligned_cols=133 Identities=14% Similarity=0.110 Sum_probs=97.9
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.++..++..+..++..++.+.+.+++.+ ++.+.++.++.+++.+...+.
T Consensus 129 ~~~~~s~~~~g~~~g~~~~g~l~Dr~Gr-----------r~~~~~~~~~~~i~~~~~~~~-------------------- 177 (505)
T TIGR00898 129 VDLTQSCFFVGVLLGSFVFGYLSDRFGR-----------KKVLLLSTLVTAVSGVLTAFS-------------------- 177 (505)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhhhhccc-----------hHHHHHHHHHHHHHHHHHHHc--------------------
Confidence 3566777777778877777776654333 234566766666666555543
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN 404 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~ 404 (439)
.+.+.+++..++.|++.+...+....++.+..|++.|+.++++......+|..+++.+...+. +|
T Consensus 178 --~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---------~w---- 242 (505)
T TIGR00898 178 --PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP---------DW---- 242 (505)
T ss_pred --ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---------HH----
Confidence 257778888999999999998888899999999999999999999999999999888766553 13
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHH
Q 013611 405 LNRAHLDYFYWLLAALSAGGLLAFL 429 (439)
Q Consensus 405 l~~~~~~~~f~~~~~l~~l~~~i~~ 429 (439)
...|+..++.+++..+..+
T Consensus 243 ------r~~~~~~~i~~~~~~~~~~ 261 (505)
T TIGR00898 243 ------RWLQLAVSLPTFLFFLLSW 261 (505)
T ss_pred ------HHHHHHHHHHHHHHHHHHH
Confidence 4566666666666655553
No 185
>PRK10133 L-fucose transporter; Provisional
Probab=97.83 E-value=0.0027 Score=64.90 Aligned_cols=115 Identities=10% Similarity=0.048 Sum_probs=86.8
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.+++.....+...+..++.+.+.+++. .++.+.+|+++.+++.++......
T Consensus 63 ~gl~~~~~~~g~~i~~~~~g~l~dr~G-----------~r~~l~~g~~~~~~~~~l~~~~~~------------------ 113 (438)
T PRK10133 63 AGLIQSAFYFGYFIIPIPAGILMKKLS-----------YKAGIITGLFLYALGAALFWPAAE------------------ 113 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHHHHHHHHHHHHh------------------
Confidence 455666777777777777777655433 345678888888888766532210
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN 389 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~ 389 (439)
..+.+.+++..+++|+|.+...+..+.++.+..|++.+...+++++..+.+|..+|+.+++.+.
T Consensus 114 -a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 114 -IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred -cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1356778888999999999999888888888878887777899999999999999998877553
No 186
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=97.81 E-value=0.00056 Score=71.18 Aligned_cols=117 Identities=13% Similarity=0.061 Sum_probs=84.3
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611 246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI 325 (439)
Q Consensus 246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (439)
+++.....+..++..++.+++.+++.|| +.+.++.++..++..+.+.... + ..
T Consensus 59 ~~~~~~~~ig~~ig~~~~g~l~d~~Grr-----------~~~~~~~~~~~v~~~~~~~~~~---------~-------~~ 111 (502)
T TIGR00887 59 AAVNGSASIGTLAGQLFFGWLADKLGRK-----------RVYGMELIIMIIATVASGLSPG---------S-------SP 111 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccH-----------HHHHHHHHHHHHHHHHHHHccC---------c-------cc
Confidence 3455566666666666666665544332 3456666667766655554310 0 00
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611 326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN 389 (439)
Q Consensus 326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~ 389 (439)
..+.+++++..++.|++++...+....++.+..|++.||+++++......+|..+++.+...+.
T Consensus 112 ~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~ 175 (502)
T TIGR00887 112 KSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL 175 (502)
T ss_pred chHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1135678888999999999998888899999999999999999999999999999998877654
No 187
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=97.81 E-value=0.0012 Score=70.60 Aligned_cols=251 Identities=8% Similarity=-0.051 Sum_probs=167.2
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc-chh----
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLN-WAL---- 105 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g-~~~---- 105 (439)
........++.+.++.++.+++..++.+++.+..++ +++++.+++|++..+.+.+. .+++..+..... +..
T Consensus 81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~---~~~~~~~s~F~~fY~~iNiG-Slis~~i~~~l~~~~~~fg~ 156 (654)
T TIGR00926 81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE---RQLSLRSRFFSFFYFAINAG-SLISTIITPILRGDVGCFGC 156 (654)
T ss_pred cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc---cchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccccc
Confidence 356667788889999999999999999999988763 46678999999999988775 555555554443 222
Q ss_pred --hh-HHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCC
Q 013611 106 --GF-GIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPD 182 (439)
Q Consensus 106 --~F-~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (439)
.| ...++.+++.++.++.....++..++++ .+...+.++...+..... + +..... ..
T Consensus 157 ~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~--p~gs~l~~v~~vi~~a~~----------~-----~~~~~~--~~- 216 (654)
T TIGR00926 157 QDCYPLAFGVPAILMILALIVFMAGSKMYKKKP--PKGNIVSKVIKCIVTALR----------K-----RFSTRS--EH- 216 (654)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhccccCCCC--CCccHHHHHHHHHHHHHH----------H-----hhccCC--cc-
Confidence 13 3566666666667777666555554432 433334454433322210 0 000000 00
Q ss_pred CCCCCCCCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHH
Q 013611 183 VSLEDGKLC--TLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFI 260 (439)
Q Consensus 183 ~~~~~~~~~--~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~ 260 (439)
....|... .+..+++.+...+++.++...+.+++.+.+.....+.+..++++..+ .+...+...+.++.+-.++.+
T Consensus 217 -~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~-~l~g~~ip~~~lq~~n~L~II 294 (654)
T TIGR00926 217 -WPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDG-DVGGFEIQPDQMQVVNPLLIL 294 (654)
T ss_pred -cchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcC-ccCCEecCHHHHHHHHHHHHH
Confidence 00111111 12223457788899999999999999999988888888888877654 333334457789999999999
Q ss_pred HhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013611 261 PIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLE 310 (439)
Q Consensus 261 pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~ 310 (439)
++...+.+++.++..++ ..+++++.-+.+.+.++.+.+..++....+
T Consensus 295 il~Pi~~~~lyp~l~~~---~~~ls~l~k~~iG~~la~la~~va~~ve~~ 341 (654)
T TIGR00926 295 IFVPIFDYIVYPAIAKC---GTRFTSLRKMAVGGLLAALSFFVAALVQLK 341 (654)
T ss_pred HhHHHHHHhHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999887433 346777888999898888888888775544
No 188
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=97.80 E-value=0.0023 Score=66.84 Aligned_cols=121 Identities=17% Similarity=0.202 Sum_probs=91.7
Q ss_pred cccchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 013611 242 KIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKP 321 (439)
Q Consensus 242 ~~~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (439)
....+.++....+..+++.|+.+.+.|++- +++.+...-++.++....+.+... .|
T Consensus 44 ~~~valv~~a~~LP~~Llsl~aG~laDr~d-----------rrrili~~~~~~~~~~~~L~~l~~--------~~----- 99 (524)
T PF05977_consen 44 PLMVALVQAASTLPILLLSLFAGALADRFD-----------RRRILILSQLLRALVALLLAVLAF--------FG----- 99 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----------chHHHHHHHHHHHHHHHHHHHHHH--------hC-----
Confidence 344567778888888888888888765433 334455555554444444433322 11
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611 322 NVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE 390 (439)
Q Consensus 322 ~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~ 390 (439)
..++|.+++..++.|++..+..|+.++.+-+.+|+++-..+.++.....++...+||.++|.+..
T Consensus 100 ----~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva 164 (524)
T PF05977_consen 100 ----LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVA 164 (524)
T ss_pred ----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 25678788888999999999999999999999999999999999999999999999999998753
No 189
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=97.77 E-value=0.00056 Score=69.53 Aligned_cols=148 Identities=14% Similarity=0.197 Sum_probs=104.0
Q ss_pred cccchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 013611 242 KIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKP 321 (439)
Q Consensus 242 ~~~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (439)
.+--|....++-..-+.+-++..+++.++ +.-+.+.+|+.+.++=+..+..++
T Consensus 405 ~~LfGv~~a~~~~gEI~~~ffs~klI~ki-----------GHv~v~~lgLa~~~~Rf~~~S~L~---------------- 457 (618)
T KOG3762|consen 405 KTLFGVVSALCHAGEILFYFFSFKLIEKI-----------GHVNVMYLGLACNVGRFLYYSYLQ---------------- 457 (618)
T ss_pred ceeeeehhhhhccchHHHHHHHHHHHHHh-----------cccceeeehhhHHHHHHHHHHHhc----------------
Confidence 34445566666666666666666554333 233455677777766666666553
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHh-hhhhhhhhHHHhhhhccccCCCCCCC
Q 013611 322 NVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVL-GVGGFLSSILVSIINEATSRDGGDSW 400 (439)
Q Consensus 322 ~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~-~iG~~ig~~l~~~~~~~~~~~~~~~~ 400 (439)
+.|..++-.+++|+-..+++.+.-+++...+|++++.+++|+....- ++|-.+|..++|.+...
T Consensus 458 ------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~--------- 522 (618)
T KOG3762|consen 458 ------NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER--------- 522 (618)
T ss_pred ------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee---------
Confidence 67777788899999999999999999999999999999999887554 77777777777777542
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHHHHHHHhccCccC
Q 013611 401 FADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNRE 438 (439)
Q Consensus 401 ~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~~~~ 438 (439)
.+....|...++.+++..+++..+-+..+++
T Consensus 523 -------fg~~ttf~~~giAcl~~l~~~~~iq~~l~~~ 553 (618)
T KOG3762|consen 523 -------FGARTTFRIFGIACLVTLALFISIQLLLKRR 553 (618)
T ss_pred -------ehhHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 2235567777777777777776666555544
No 190
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=97.75 E-value=0.0017 Score=66.85 Aligned_cols=171 Identities=15% Similarity=0.136 Sum_probs=106.6
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhH-HhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-CC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQR-IGAGMLLSSISMVVAALVEIKRLETAKEYGLIDK-PN 322 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~-i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~ 322 (439)
.+.+..+.++..++..|+.+.+.|+...|++ +++. +..|.+..++++.++++..... .-.+ +. ++
T Consensus 41 ~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~G-------RRrp~il~g~~~~~~~l~ll~~~~~~~----~~~~--~~~~~ 107 (477)
T TIGR01301 41 ASIIWLCGPLSGLLVQPLVGYLSDRCTSRFG-------RRRPFIAAGAALVAFAVILIGFAADIG----HLFG--DNLDK 107 (477)
T ss_pred HHHHHHHHHHHHHHHHhHeeehhcCCCCCCC-------ChHHHHHHHHHHHHHHHHHHHhCchhh----hhcc--ccccc
Confidence 4567788899999999999999886555542 2233 3445666777766666543110 0000 00 00
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhH--HHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCC
Q 013611 323 VTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELK--SFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSW 400 (439)
Q Consensus 323 ~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~--g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~ 400 (439)
.......+..+....+..++.....++..+++.+.+|++.| +.+.+....+.++|+.+|..+++...... +
T Consensus 108 ~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~-------~ 180 (477)
T TIGR01301 108 KTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYK-------I 180 (477)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------h
Confidence 00112234445555566667777777778999999998865 67999999999999999999887642110 1
Q ss_pred CCC------CcccchhhHHHHHHHHHHHHHHHHHHHHhccC
Q 013611 401 FAD------NLNRAHLDYFYWLLAALSAGGLLAFLYFAKSY 435 (439)
Q Consensus 401 ~~~------~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~ 435 (439)
++- ..-..++...|.+-+++.+++.++-.+..|.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~ 221 (477)
T TIGR01301 181 FPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKEN 221 (477)
T ss_pred cccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence 110 00012556678777777777777766666654
No 191
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.74 E-value=0.0012 Score=75.61 Aligned_cols=115 Identities=12% Similarity=0.034 Sum_probs=84.1
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611 246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI 325 (439)
Q Consensus 246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (439)
+++..+..+..+++.|+.+.+.+++.+ ++.+.++.++.+++.++..+...
T Consensus 50 ~~~~~~~~l~~~l~~~~~G~l~Dr~gr-----------k~~l~~~~~~~~~~~~~~~~~~~------------------- 99 (1146)
T PRK08633 50 AIVNALFLLPFLLLSSPAGFLADKFSK-----------NRVIRIVKLFEVGLTLLIVLAYY------------------- 99 (1146)
T ss_pred HHHHHHHHHHHHHHhhhHhhhcccccH-----------HHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 455566666667777777776554332 23444555544444433333211
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611 326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE 390 (439)
Q Consensus 326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~ 390 (439)
..+++++++..++.|++.++..+...+++.+.+|++.|+.++|+.....++|..+|+.+++.+.+
T Consensus 100 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~ 164 (1146)
T PRK08633 100 LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE 164 (1146)
T ss_pred HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12467788888999999999999999999999999999999999999999999999999998764
No 192
>PTZ00207 hypothetical protein; Provisional
Probab=97.74 E-value=0.0026 Score=67.08 Aligned_cols=118 Identities=13% Similarity=0.087 Sum_probs=84.8
Q ss_pred CchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChh
Q 013611 282 TMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE 361 (439)
Q Consensus 282 ~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~ 361 (439)
++++.+.+|.++.+++.++.++... +. ...+.+.+.+..++.|+|+....+.....+.+..| +
T Consensus 89 G~R~vllig~ll~~iG~ll~ala~~---------~~-------i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~ 151 (591)
T PTZ00207 89 GPRPIFVLSMTVFCLGTLLFALTFQ---------EV-------IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-S 151 (591)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhc---------cc-------ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-h
Confidence 4556788999999999888776521 00 01367778888899999999887777778888887 6
Q ss_pred hHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611 362 LKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAK 433 (439)
Q Consensus 362 ~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~ 433 (439)
.||+++|+.....++|+++.+.+...+.. .+...+|++++++.++..++.+.+.+
T Consensus 152 ~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-----------------~~~~~~fl~l~vl~~vv~ll~~~~vr 206 (591)
T PTZ00207 152 NRGAVVAIMKTFTGLGSAILGSIQLAFFS-----------------DNTSAYFFFLMSFALVVGILAIVFMR 206 (591)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HhHHHHHHHHHHHHHHHHHHHHhhee
Confidence 78999999999999999864444443321 11245677777777777666666544
No 193
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=97.72 E-value=0.0012 Score=68.01 Aligned_cols=155 Identities=15% Similarity=0.049 Sum_probs=98.0
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611 246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI 325 (439)
Q Consensus 246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (439)
++..++..+...+..++.+.+.+++.+ ++.+.++.++.+++.+..++.+.... ....+ .
T Consensus 58 ~~~~s~~~ig~~~~~~~~G~l~dr~Gr-----------r~~~~~~~~l~~i~~~~~~~~~~~~~-------~~~~~---~ 116 (479)
T PRK10077 58 GFCVASALIGCIIGGALGGYCSNRFGR-----------RDSLKIAAVLFFISALGSAWPEFGFT-------SIGPD---N 116 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-----------HHHHHHHHHHHHHHHHHHHhhccccc-------ccccc---c
Confidence 456666777777777777776654433 34566777777666655554321000 00000 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCc
Q 013611 326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNL 405 (439)
Q Consensus 326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l 405 (439)
....+.+++..++.|++.+...+....++.+..|++.||.++|++.....+|..+++.+...+..... ..+ +
T Consensus 117 ~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~----~~~----~ 188 (479)
T PRK10077 117 TGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGD----ASW----L 188 (479)
T ss_pred hhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCc----ccc----c
Confidence 12345567788999999999999998999999999999999999999999999988766555532110 001 1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHH
Q 013611 406 NRAHLDYFYWLLAALSAGGLLAFL 429 (439)
Q Consensus 406 ~~~~~~~~f~~~~~l~~l~~~i~~ 429 (439)
+..+..+.|++.++.+++..+..+
T Consensus 189 ~~~gWr~~f~~~~~~~~~~~~~~~ 212 (479)
T PRK10077 189 NTDGWRYMFASEAIPALLFLMLLY 212 (479)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHH
Confidence 112335566666666666544433
No 194
>TIGR00901 2A0125 AmpG-related permease.
Probab=97.66 E-value=0.0018 Score=63.93 Aligned_cols=123 Identities=16% Similarity=0.190 Sum_probs=80.3
Q ss_pred CchhH-HhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCh
Q 013611 282 TMLQR-IGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPK 360 (439)
Q Consensus 282 ~~~~~-i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~ 360 (439)
.+++. +..+.++.++++..+.+... ..+.+++....++.+++-....++..+++.+.+|+
T Consensus 54 Grr~~~l~~~~~~~~~~~~~l~~~~~-------------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 114 (356)
T TIGR00901 54 GRRRSWLVLTQVLLLSLLLILSFLVP-------------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSD 114 (356)
T ss_pred CccHHHHHHHHHHHHHHHHHHHcCCc-------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 33444 35566666666555554321 12455566666677777777788888999999999
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHH
Q 013611 361 ELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYF 431 (439)
Q Consensus 361 ~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~ 431 (439)
+.|+.+.|+.....++|..+++.+.+.+......++ ..+......|+..++..+++.++.++.
T Consensus 115 ~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~--------~~~~~wr~~f~i~ai~~l~~~~~~~~~ 177 (356)
T TIGR00901 115 EELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANT--------GLITLWGYIFFWTALLILPGLLVTLFL 177 (356)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccc--------ccccccHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999887753321110 011123556766666666655444433
No 195
>PRK11010 ampG muropeptide transporter; Validated
Probab=97.66 E-value=0.0067 Score=63.00 Aligned_cols=133 Identities=19% Similarity=0.297 Sum_probs=91.1
Q ss_pred hhhhhhhhhcccccCCCCCCCchh-HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHH
Q 013611 262 IYDCIFVPITRYFTQNPSGITMLQ-RIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCG 340 (439)
Q Consensus 262 l~~~~~~~~~~k~~~~~~~~~~~~-~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g 340 (439)
+...++.|+.+|+.. |+ .+.++ .+.++.++.+++...+++... ..+.+++.+..++.+
T Consensus 60 ~~~~l~gpl~Dr~~~-~~-~Grrr~~ll~~~i~~~~~~~~~a~~~~-------------------~~~l~~l~~~~~l~~ 118 (491)
T PRK11010 60 VFKFLWSPLMDRYTP-PF-LGRRRGWLLATQLLLLVAIAAMGFLEP-------------------GTQLRWLAALAVVIA 118 (491)
T ss_pred HHHHHHHHHHHcccc-cC-CCCchHHHHHHHHHHHHHHHHHHHcCC-------------------cchHHHHHHHHHHHH
Confidence 445556666666411 11 23333 355666666666666655421 135677777788888
Q ss_pred HHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHH
Q 013611 341 IADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAAL 420 (439)
Q Consensus 341 ige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l 420 (439)
++.....+...+++.+..|+++||.++|+......+|..+++.+...+.+.. .+....|+..+++
T Consensus 119 ~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~---------------~GWr~~f~i~a~l 183 (491)
T PRK11010 119 FCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRY---------------LGWQGMYWLMAAL 183 (491)
T ss_pred HHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------cCHHHHHHHHHHH
Confidence 8888888888899999999999999999999999999999998887775310 1235677777777
Q ss_pred HHHHHHHHHH
Q 013611 421 SAGGLLAFLY 430 (439)
Q Consensus 421 ~~l~~~i~~~ 430 (439)
+++..+..++
T Consensus 184 ~ll~~l~~~~ 193 (491)
T PRK11010 184 LIPCIIATLL 193 (491)
T ss_pred HHHHHHHHHh
Confidence 7776555443
No 196
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=97.65 E-value=0.0015 Score=74.84 Aligned_cols=63 Identities=16% Similarity=0.043 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611 328 SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE 390 (439)
Q Consensus 328 ~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~ 390 (439)
++|++++..+++|+++.+..|...+.+.+..|++.++.++|+.+...++|..+|+.+++.+..
T Consensus 107 s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~ 169 (1140)
T PRK06814 107 SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI 169 (1140)
T ss_pred hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678888999999999999999999999999999999999999999999999999999998864
No 197
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.64 E-value=0.001 Score=68.27 Aligned_cols=117 Identities=11% Similarity=0.205 Sum_probs=97.8
Q ss_pred CchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChh
Q 013611 282 TMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE 361 (439)
Q Consensus 282 ~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~ 361 (439)
+.++.+..+.++.+++-++...+.. .+.+.+++..+++|++++...|....+..+-+|++
T Consensus 101 G~r~v~~~~~~~sa~~t~l~P~aa~--------------------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~ 160 (466)
T KOG2532|consen 101 GARRVFFISGLISALLTLLTPLAAS--------------------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPN 160 (466)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH--------------------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHH
Confidence 5566788898888888888887752 35556788899999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611 362 LKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAK 433 (439)
Q Consensus 362 ~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~ 433 (439)
+|++..++......+|..++-.++|.+.+.. .+| ...|.+.|+++++-.++++.+.+
T Consensus 161 Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~-----~GW----------~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 161 ERSTFIAILTAGSQLGTIITMPVSGLLCESS-----LGW----------PSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhccC-----CCC----------chHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998999887531 245 56788888888888888777655
No 198
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=97.62 E-value=0.0021 Score=63.43 Aligned_cols=110 Identities=15% Similarity=0.178 Sum_probs=80.3
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.++...++.+...+..++.+++.+++.+ ++.+.+|.++.+++.... ..
T Consensus 37 ~g~~~s~~~~~~~~~~~~~g~l~dr~g~-----------r~~~~~~~~~~~~~~~~~-~~-------------------- 84 (355)
T TIGR00896 37 AGLLTALPVLCFAVLAPLAPWLARRFGE-----------ERSVAAGLLLIAAGILIR-SA-------------------- 84 (355)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhCc-----------hHHHHHHHHHHHHHHHHH-Hh--------------------
Confidence 4566777888888888888887654333 345666776666665443 21
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN 389 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~ 389 (439)
.+.+.++...++.|+|.+...+.....+.+..| ++|++++|+++...++|..+++.+.+.+.
T Consensus 85 --~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~ 146 (355)
T TIGR00896 85 --PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLA 146 (355)
T ss_pred --ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245566777888999998877666666777666 58999999999999999999998887765
No 199
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=97.57 E-value=5.1e-08 Score=99.68 Aligned_cols=83 Identities=10% Similarity=0.185 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc---ccchhhh
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDN---LNWALGF 107 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~---~g~~~~F 107 (439)
+.+.+.++|++.|+|.|+..+....++.+..|++. |++...+...+.++|.+++..++-...+. .+||+.+
T Consensus 101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~ 174 (451)
T PF00083_consen 101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL 174 (451)
T ss_pred ccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccc
Confidence 78899999999999999999999999999999987 99999999999999999888776655433 4599999
Q ss_pred HHHHHHHHHHHH
Q 013611 108 GIPCAFMVAALV 119 (439)
Q Consensus 108 ~i~~~~~~i~~~ 119 (439)
.+..+..++..+
T Consensus 175 ~~~~~~~l~~~~ 186 (451)
T PF00083_consen 175 IFGAIPSLLVLL 186 (451)
T ss_pred cccccccccccc
Confidence 887755544333
No 200
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=97.55 E-value=0.0053 Score=62.53 Aligned_cols=111 Identities=15% Similarity=0.096 Sum_probs=79.2
Q ss_pred HHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHH
Q 013611 258 TFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYL 337 (439)
Q Consensus 258 i~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 337 (439)
+..|+.+.+..++.+|+ ++++.+.++.++.+++.+..++....- ..+ ..+...+++..+
T Consensus 74 ~~~~ig~~~~G~l~Dr~-------Grr~~l~~~~~~~~~~~~~~~~~~~~~-----~~~---------~~~~~~l~~~R~ 132 (432)
T PRK10406 74 LMRPIGGWLFGRIADKH-------GRKKSMLISVCMMCFGSLVIACLPGYE-----TIG---------TWAPALLLLARL 132 (432)
T ss_pred HHHHHHHHHHHHHHHhc-------CcHHHHHHHHHHHHHHHHHHhhcCCch-----hHH---------HHHHHHHHHHHH
Confidence 34455566666666664 445677788888888877766542100 000 013446778889
Q ss_pred HHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611 338 LCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN 389 (439)
Q Consensus 338 l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~ 389 (439)
++|+|++...+....++.+..|+++||+++++.......|..+++.+...+.
T Consensus 133 l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~ 184 (432)
T PRK10406 133 FQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQ 184 (432)
T ss_pred HHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888899999999999999999999888888888876655443
No 201
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=97.53 E-value=0.002 Score=65.39 Aligned_cols=158 Identities=15% Similarity=0.085 Sum_probs=99.8
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.+.+..+..+.-.+..|+.+.+.|+..+|+++ .+..+.+|....+++++++..... ..
T Consensus 37 ~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Gr------rr~~i~~~~~~~~i~~~~~~~~~~----------------~~ 94 (437)
T TIGR00792 37 VGTLFLVARILDAITDPIMGNIVDRTRTRWGK------FRPWLLIGAIPFSIVLVLLFTTPD----------------FS 94 (437)
T ss_pred HHHHHHHHHHHHHhccchheEeeecCCCCCCC------cchhHHHhHHHHHHHHHHHHhCCC----------------CC
Confidence 35566667777788888888887765554422 123466777777777665543310 00
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhc-ChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCC
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQI-PKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFAD 403 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~a-P~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~ 403 (439)
.....+|....+++.+++..+..++..+.....+ |++.|++..+..+....+|+.+++.+.+.+......
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~--------- 165 (437)
T TIGR00792 95 ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGG--------- 165 (437)
T ss_pred cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------
Confidence 1123567777788888888888777777777776 578999999999999999988887776655421110
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611 404 NLNRAHLDYFYWLLAALSAGGLLAFLYFAK 433 (439)
Q Consensus 404 ~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~ 433 (439)
.-+..++...+.+.++++++..++.+...+
T Consensus 166 ~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~ 195 (437)
T TIGR00792 166 GDDKFGWFMFALVLALIGVVSLIICFFGTK 195 (437)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 000112345566667777666655544444
No 202
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=97.53 E-value=0.0084 Score=60.34 Aligned_cols=109 Identities=15% Similarity=0.128 Sum_probs=78.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHH
Q 013611 286 RIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSF 365 (439)
Q Consensus 286 ~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~ 365 (439)
.+.++.++.++++..+.+... ..++|++.+.+++.++......+...+++.+..|+++|++
T Consensus 70 ~l~~~~~~~~l~~~~l~~~~~-------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~ 130 (402)
T PRK11902 70 WLLLTQVGLAASIAAMAFCPP-------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGA 130 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcCc-------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhH
Confidence 466667777777766655421 1346666666677777777788888899999999999999
Q ss_pred HHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHH
Q 013611 366 GLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAF 428 (439)
Q Consensus 366 ~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~ 428 (439)
+.++.....++|..+++.+.+.+.+.. .+....|+..+++.++..+..
T Consensus 131 ~~~~~~~g~~~g~i~g~~l~~~l~~~~---------------~gw~~~f~i~a~~~l~~~l~~ 178 (402)
T PRK11902 131 GAAVKVLGYRLAMLVSGGLALWLADRV---------------LGWGNTYLLMAGLMLAGALTT 178 (402)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcc---------------cCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988877765310 122556777777666655543
No 203
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=97.52 E-value=0.0014 Score=67.91 Aligned_cols=107 Identities=16% Similarity=0.097 Sum_probs=79.8
Q ss_pred HHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchH---HHHHH
Q 013611 258 TFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSV---WWLIP 334 (439)
Q Consensus 258 i~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~ 334 (439)
+..|+.+.+..++.+|+ +.++.+.+++++++++.+..++..... ...+ ..++.
T Consensus 68 l~~~ig~~~~G~l~Dr~-------Grr~~l~~~~~l~~i~~~~~a~~~~~~-----------------~~g~~a~~~l~~ 123 (490)
T PRK10642 68 LIRPLGGLFFGMLGDKY-------GRQKILAITIVIMSISTFCIGLIPSYA-----------------TIGIWAPILLLL 123 (490)
T ss_pred HHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHHHHHHHHHhcccHH-----------------HHHHHHHHHHHH
Confidence 34455555555566664 445677888888888888777663210 0112 24678
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 013611 335 QYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSII 388 (439)
Q Consensus 335 ~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~ 388 (439)
..+++|+|++...+....++.+..|++.||.++++......+|..+|+.+...+
T Consensus 124 ~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~ 177 (490)
T PRK10642 124 CKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLI 177 (490)
T ss_pred HHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999988889999999999999999999988888888888766554
No 204
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.45 E-value=0.0017 Score=64.89 Aligned_cols=62 Identities=11% Similarity=-0.029 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013611 33 IVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDN 100 (439)
Q Consensus 33 ~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~ 100 (439)
+..+.|-.+.+..+-.+.-.-+-+-+-||++++ |+.|-..-.+++.+|.++|.++.+.+..+
T Consensus 141 ~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 141 PLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred hhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 467788888888888888887888899999988 99999999999999999999998888653
No 205
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.44 E-value=0.0045 Score=63.92 Aligned_cols=96 Identities=13% Similarity=0.187 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCccc
Q 013611 328 SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNR 407 (439)
Q Consensus 328 ~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~ 407 (439)
+.+.++...++.|+.|...+|....+..+.-.++.||+.+|+|+...++|+++|+.+...+........ .
T Consensus 133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~----------~ 202 (495)
T KOG2533|consen 133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGG----------L 202 (495)
T ss_pred hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCC----------c
Confidence 566788888999999999999999999999999999999999999999999999998887543211111 1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611 408 AHLDYFYWLLAALSAGGLLAFLYFAK 433 (439)
Q Consensus 408 ~~~~~~f~~~~~l~~l~~~i~~~~~~ 433 (439)
.++.+.|.+-|+++++.+++.++..+
T Consensus 203 ~gW~~~FiI~G~i~~~~gi~~f~~lp 228 (495)
T KOG2533|consen 203 AGWRWLFIIEGVITLVLGIVVFFFLP 228 (495)
T ss_pred CCceeehhHHHHHHHHHHheEEEEec
Confidence 34477888889888888766544433
No 206
>PRK15075 citrate-proton symporter; Provisional
Probab=97.35 E-value=0.0084 Score=61.09 Aligned_cols=108 Identities=13% Similarity=0.111 Sum_probs=75.5
Q ss_pred HhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHH
Q 013611 261 PIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCG 340 (439)
Q Consensus 261 pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g 340 (439)
|+...+..++.+|. +.++.+..+.++.+++....++...... .+ ......+++..++.|
T Consensus 70 ~ig~~~~G~l~Dr~-------Grr~~l~~~~~~~~~~~~l~~~~~~~~~-----~~---------~~~~~~l~~~R~l~G 128 (434)
T PRK15075 70 PLGAIVLGAYIDRV-------GRRKGLIVTLSIMASGTLLIAFVPGYAT-----IG---------LAAPLLVLLGRLLQG 128 (434)
T ss_pred hhHHHHHHHHhhhh-------chHHHHHHHHHHHHHHHHHHHhCCcHHH-----HH---------HHHHHHHHHHHHHhh
Confidence 44455555555664 4456777888888888777775521000 00 000123566778999
Q ss_pred HHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611 341 IADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN 389 (439)
Q Consensus 341 ige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~ 389 (439)
++++...+....++.+..|++.||+++++.....++|..+++.+++.+.
T Consensus 129 ~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~ 177 (434)
T PRK15075 129 FSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLN 177 (434)
T ss_pred ccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888877789999999999999999999988888888887777654
No 207
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.32 E-value=0.02 Score=60.21 Aligned_cols=138 Identities=14% Similarity=0.268 Sum_probs=94.4
Q ss_pred cchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC
Q 013611 244 PAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNV 323 (439)
Q Consensus 244 ~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (439)
...|+...+.+...+..|+.+++.+-+.||+ -+..|.++..+|+++.+..+
T Consensus 79 ~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~-----------~~i~g~~l~vvG~Iv~atA~------------------ 129 (599)
T PF06609_consen 79 NWSWFSTAWTLASAVSFPFVGRLSDLFGRRY-----------FFIIGSLLGVVGSIVCATAQ------------------ 129 (599)
T ss_pred cchHHHHHHHHHHHHHHHhhHHHHHHhcchH-----------HHHHHHHHHHhHHHHhhcCC------------------
Confidence 3468888889998999999999887665553 56778888888887777552
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCC
Q 013611 324 TIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFAD 403 (439)
Q Consensus 324 ~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~ 403 (439)
+...++...++.|+|.+...... ..+.+.+|.+.|+...++..+.......+|+.+...+.. +.+|
T Consensus 130 ----~~~~~iag~~l~GvgaG~~~~~~-~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~------~~~W--- 195 (599)
T PF06609_consen 130 ----NMNTFIAGMVLYGVGAGVQELAA-LAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA------HSGW--- 195 (599)
T ss_pred ----cHHHHHHHHHHHHHhhHHHHHHH-HHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc------CCCc---
Confidence 45557888999999977765544 457889999999888877766655555566666655432 1245
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHH
Q 013611 404 NLNRAHLDYFYWLLAALSAGGLLAFLYF 431 (439)
Q Consensus 404 ~l~~~~~~~~f~~~~~l~~l~~~i~~~~ 431 (439)
.|.|++.+++..++.++..++
T Consensus 196 -------Rw~~~~~~i~~~i~~vl~~~f 216 (599)
T PF06609_consen 196 -------RWIFYIFIIWSGIALVLIFFF 216 (599)
T ss_pred -------chHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444333
No 208
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.13 Score=52.33 Aligned_cols=158 Identities=14% Similarity=0.107 Sum_probs=92.7
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCC--CCCCCCC
Q 013611 247 SLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGL--IDKPNVT 324 (439)
Q Consensus 247 ~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 324 (439)
.+..++.+.+-+...+.+..+..+.+|. ++ ......+.+|.++.-+++.+.-.. +++|... .+++...
T Consensus 279 ~~~ai~~~~~g~g~v~~g~~~~~l~~ri-r~---fg~~~~~~~~~~~~~~~~~li~l~------~p~dap~~~t~~~~~~ 348 (461)
T KOG3098|consen 279 YLIAIYSIGIGLGEVIGGLDFSILSKRI-RG---FGRKPTVLIGIIIHLIGFLLIHLS------FPNDAPLRPTDSPPLL 348 (461)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhhhh-hh---cccCcchhHHHHHHHHHHHHHhcc------ccccCCCCCCcccccc
Confidence 4566777777776666666666665553 33 355556677766655554443322 1222211 1111000
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN 404 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~ 404 (439)
.+-+.....+..+++|+++.......+.++.... ++.|..+.+++-+..++++.++........
T Consensus 349 ~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~~--------------- 412 (461)
T KOG3098|consen 349 FTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYLL--------------- 412 (461)
T ss_pred cccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhhH---------------
Confidence 1112334556678999999999888888888888 677888888888888888876544333221
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhccC
Q 013611 405 LNRAHLDYFYWLLAALSAGGLLAFLYFAKSY 435 (439)
Q Consensus 405 l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~ 435 (439)
...+...+.+++.+...++....++.
T Consensus 413 -----l~~~~l~~~i~~~i~~~~~~~~~~~~ 438 (461)
T KOG3098|consen 413 -----LYIYTLGLPIFCVIATTIFFIVAERT 438 (461)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223444566666666666665543
No 209
>PRK09952 shikimate transporter; Provisional
Probab=97.24 E-value=0.0036 Score=63.96 Aligned_cols=112 Identities=21% Similarity=0.149 Sum_probs=81.1
Q ss_pred HHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHH
Q 013611 257 ITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQY 336 (439)
Q Consensus 257 ii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 336 (439)
.+..|+.+.+..++.+|+ ++++.+.++.++.+++.++.++...... .+ ..+.+.+++..
T Consensus 74 ~~~~~~g~~~~G~l~Dr~-------Grr~~l~~~~~~~~~~~~~~~~~~~~~~-----~~---------~~~~~~l~~~R 132 (438)
T PRK09952 74 FLFRPLGGVVFGHFGDRL-------GRKRMLMLTVWMMGIATALIGLLPSFST-----IG---------WWAPVLLVTLR 132 (438)
T ss_pred HHHHhhHHHHHHHHHHhh-------ccHHHHHHHHHHHHHHHHHHhcCCcHHH-----HH---------HHHHHHHHHHH
Confidence 345667666666677764 4456777888888888777666521000 00 01122466778
Q ss_pred HHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611 337 LLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN 389 (439)
Q Consensus 337 ~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~ 389 (439)
+++|++++...+....++.+..|++.||.+++.......+|..++..+...+.
T Consensus 133 ~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~ 185 (438)
T PRK09952 133 AIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLIS 185 (438)
T ss_pred HHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999998888889999999999999999999999999998887766554
No 210
>PRK15011 sugar efflux transporter B; Provisional
Probab=97.22 E-value=0.032 Score=55.93 Aligned_cols=90 Identities=8% Similarity=-0.047 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhH--HHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCc
Q 013611 328 SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELK--SFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNL 405 (439)
Q Consensus 328 ~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~--g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l 405 (439)
+.+++.....+.+.......|...+.+.+..|++.| +.+++..+...++|..+|+.+++.+.+.
T Consensus 104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~-------------- 169 (393)
T PRK15011 104 NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG-------------- 169 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh--------------
Confidence 344443333344434444566666666666665543 4566888889999999999999988632
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611 406 NRAHLDYFYWLLAALSAGGLLAFLYFAK 433 (439)
Q Consensus 406 ~~~~~~~~f~~~~~l~~l~~~i~~~~~~ 433 (439)
.+....|...+.+.++..+..+...+
T Consensus 170 --~gw~~~f~~~~~~~~~~~~~~~~~~~ 195 (393)
T PRK15011 170 --FSFTVMYLSAAVAFIVCGVMVWLFLP 195 (393)
T ss_pred --cChHHHHHHHHHHHHHHHHHHHhhcC
Confidence 12355677777777776665554434
No 211
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=97.19 E-value=0.014 Score=57.83 Aligned_cols=152 Identities=18% Similarity=0.119 Sum_probs=97.8
Q ss_pred CccccchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 013611 240 SIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLID 319 (439)
Q Consensus 240 g~~~~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 319 (439)
++.++.+....+.++.++... +.......+.+|. ..++...+++++..+-.+..++...
T Consensus 43 ~~~LS~~q~~ll~aiPil~Ga-llRl~~g~l~drf-------GgR~~~~~s~~l~~IP~~~~~~a~~------------- 101 (417)
T COG2223 43 DFGLSEGQKGLLVAIPILVGA-LLRLPYGFLTDRF-------GGRKWTILSMLLLLIPCLGLAFAVT------------- 101 (417)
T ss_pred ccCCCHHHHHHHHHHHHHHhH-HHHHHHHhhhccc-------CchHHHHHHHHHHHHHHHHHHHHcc-------------
Confidence 334666665555555544432 3333344444553 5566778888888888888887742
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCC
Q 013611 320 KPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDS 399 (439)
Q Consensus 320 ~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~ 399 (439)
..+.|.++..-++.|++-+-..+.+ ..+.+.-||+++|+++|++. ..|+|..+...+...+.... .
T Consensus 102 ------~~~~~~ll~~gll~G~~GasFav~m-~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~------g 167 (417)
T COG2223 102 ------YPSTWQLLVIGLLLGLAGASFAVGM-PNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF------G 167 (417)
T ss_pred ------CCchHHHHHHHHHHhcccceehccc-ccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH------h
Confidence 1234666666677777766666666 68899999999999999999 89999988887777665321 1
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611 400 WFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAK 433 (439)
Q Consensus 400 ~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~ 433 (439)
+ +.....-.+.....+++.+.+++..+
T Consensus 168 ~-------~~w~~~~~i~~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 168 F-------LAWRNVAGIYVVALAIAAVLAWLGMN 194 (417)
T ss_pred h-------HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 0 00122333444566666677776655
No 212
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=97.18 E-value=0.12 Score=50.70 Aligned_cols=85 Identities=18% Similarity=0.160 Sum_probs=57.7
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH
Q 013611 29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFG 108 (439)
Q Consensus 29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~ 108 (439)
..++..+++.|.+.++|.|+ .|...++-....|... |..-.-.. ....+|.++.-.+.=....++||||...
T Consensus 163 spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~ 234 (528)
T KOG0253|consen 163 SPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLF 234 (528)
T ss_pred CCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 44667789999999999999 9999998888888755 44443333 4456777776666655666779997554
Q ss_pred HHH-HHHHHHHHHH
Q 013611 109 IPC-AFMVAALVLF 121 (439)
Q Consensus 109 i~~-~~~~i~~~l~ 121 (439)
... ..++.+...+
T Consensus 235 ~~~~pl~~~a~f~~ 248 (528)
T KOG0253|consen 235 TSSTPLMFAARFLV 248 (528)
T ss_pred HHHhHHHHHHHHHh
Confidence 444 3344343333
No 213
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=97.16 E-value=0.013 Score=58.71 Aligned_cols=140 Identities=11% Similarity=0.033 Sum_probs=81.2
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHH-HHHHHHHHhhhCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALV-EIKRLETAKEYGLIDKPNV 323 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 323 (439)
.+.+..+..+...+..|+.+++.|++.+|+ .+..+....+++....... ....
T Consensus 40 ~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~-----------~~~~~~~~~~~~~~~~~~~~~~~~--------------- 93 (396)
T TIGR00882 40 TGIVFSCISLFSILFQPLFGLISDKLGLKK-----------HLLWIISGLLVLFAPFFIYVFGPL--------------- 93 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-----------HHHHHHHHHHHHHHHHHHHHhhhH---------------
Confidence 466777888888888888888877655442 3333333333322211111 0000
Q ss_pred CCcch-HHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCC
Q 013611 324 TIPTS-VWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFA 402 (439)
Q Consensus 324 ~~~~~-~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~ 402 (439)
...+ .+...+..++.+++.....+...+++.+..++ ++...|......++|..+|+.+++.+.+.
T Consensus 94 -~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~g~~~~g~l~~~----------- 159 (396)
T TIGR00882 94 -LQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--SNFEYGKARMFGCVGWALCASIAGILFSI----------- 159 (396)
T ss_pred -HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh--cccccchhhhhcccHHHHHHHHHhhhhcc-----------
Confidence 0011 22234455677777777777776666554433 34566777788899999999998877531
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHHHHH
Q 013611 403 DNLNRAHLDYFYWLLAALSAGGLLAFLY 430 (439)
Q Consensus 403 ~~l~~~~~~~~f~~~~~l~~l~~~i~~~ 430 (439)
+....|+..++++++..++.+.
T Consensus 160 ------~~~~~f~~~~~~~~~~~~~~~~ 181 (396)
T TIGR00882 160 ------DPQIVFWLGSGFALILMLLLMF 181 (396)
T ss_pred ------CchHHHHHHHHHHHHHHHHHHH
Confidence 1244666667777766554443
No 214
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.12 E-value=0.0033 Score=61.53 Aligned_cols=110 Identities=16% Similarity=0.222 Sum_probs=82.3
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCc
Q 013611 247 SLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIP 326 (439)
Q Consensus 247 ~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (439)
.+.+.-.+.=.+..|+.+.+. +++++| ..+.+|.+..++++.+.+...
T Consensus 72 flGSsF~ilQ~~sS~~~G~~S----D~yGRk-------pvll~c~~~va~s~ll~~~S~--------------------- 119 (451)
T KOG2615|consen 72 FLGSSFSILQFISSPLWGCLS----DRYGRK-------PVLLACLIGVALSYLLWALSR--------------------- 119 (451)
T ss_pred hHhhHHHHHHHHhhhhhhhhh----hhhCch-------HHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 333334444444555555544 454333 366777777888777776542
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611 327 TSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE 390 (439)
Q Consensus 327 ~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~ 390 (439)
++..++.+-++.|+..+.+.+.- +++.+.++++.|+.+|+......++|-.+||++++.+.+
T Consensus 120 -~F~afv~aR~l~Gi~kgnl~v~r-AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 120 -NFAAFVLARFLGGIFKGNLSVIR-AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred -HHHHHHHHHHhhhhccCchHHHH-HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 45456777899999999988877 799999999999999999999999999999999999876
No 215
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=97.09 E-value=9.6e-05 Score=77.29 Aligned_cols=177 Identities=15% Similarity=0.139 Sum_probs=3.0
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHH--HHHHHh---------
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIK--RLETAK--------- 313 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~--~~~~~~--------- 313 (439)
.|++.+.+-+..++...+..++ ..| .++++.+++|.+++++|.++.++-+-. .|+.+.
T Consensus 40 ~G~i~s~~di~~~~~~~~vsy~----g~~-------~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~ 108 (539)
T PF03137_consen 40 SGLISSSYDIGSLVVVLFVSYF----GGR-------GHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSS 108 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----hhh-------cCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccc
Confidence 3455555555555555444443 222 256678999999999998888754432 111110
Q ss_pred -hhCCC---------------CC-CCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhh
Q 013611 314 -EYGLI---------------DK-PNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGV 376 (439)
Q Consensus 314 -~~~~~---------------~~-~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~i 376 (439)
+...| .+ ++.......+++++++++.|+|.....+-+.+++.+.++++..+.+.|+.+....+
T Consensus 109 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~l 188 (539)
T PF03137_consen 109 ISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSIL 188 (539)
T ss_dssp -------------------------------------------SSS----------------------------------
T ss_pred cccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhc
Confidence 01112 00 00111123577889999999999999888889999999999999999999999999
Q ss_pred hhhhhhHHHhhhhc----cccCC--------CCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhccCccC
Q 013611 377 GGFLSSILVSIINE----ATSRD--------GGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNRE 438 (439)
Q Consensus 377 G~~ig~~l~~~~~~----~~~~~--------~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~~~~ 438 (439)
|.++|-.+++.... ....+ .+.+|+ |-.+.-|...+.+.++.++-+..+-|++++.
T Consensus 189 GPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~Wv------GAWWLGfli~g~~~~l~aipl~~FPk~lp~~ 256 (539)
T PF03137_consen 189 GPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWV------GAWWLGFLICGILLFLSAIPLFFFPKKLPGT 256 (539)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHH------HHHHHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence 99999888775532 21111 123443 3334447777888888888888877776543
No 216
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=97.06 E-value=0.017 Score=57.69 Aligned_cols=115 Identities=9% Similarity=-0.104 Sum_probs=71.0
Q ss_pred ccchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCC
Q 013611 243 IPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPN 322 (439)
Q Consensus 243 ~~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (439)
...+....+..+..++..|+.+.+.++..++. ...+.+.++..+. +. .....
T Consensus 39 ~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~-------~~~~~~~~~~~~~--~~-~~~~~------------------ 90 (382)
T PRK11128 39 ETIGLLLGAGLVARFLGSLLIAPRVKDPSQLI-------PALRLLALLTLLF--AV-AFWFG------------------ 90 (382)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhhhcchH-------HHHHHHHHHHHHH--HH-HHHHh------------------
Confidence 34566677777777887888777765444321 1112222221111 11 11111
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611 323 VTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE 390 (439)
Q Consensus 323 ~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~ 390 (439)
..+.|.+.+...+.+++.....+...+.+.+. ++.|+..+|......++|..+|+.+++.+.+
T Consensus 91 ---~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~ 153 (382)
T PRK11128 91 ---AHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVS 153 (382)
T ss_pred ---cccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 13566666777778888777776665555544 4557788888888889999999999998864
No 217
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=97.01 E-value=0.0043 Score=62.16 Aligned_cols=87 Identities=22% Similarity=0.422 Sum_probs=60.2
Q ss_pred CCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHH----HHHHHHHHHHHHHHHHHhhh----
Q 013611 28 HHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWW----YFGISFGANSTILVVIYIQD---- 99 (439)
Q Consensus 28 ~~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~----y~~~nlG~~ig~~l~g~l~~---- 99 (439)
+..-...+++.|.++|+|.|+=.|+..++..+...++. |+...++. .+++-.|+.++.++.+-...
T Consensus 140 ~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~ 213 (538)
T KOG0252|consen 140 PLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNG 213 (538)
T ss_pred CcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCCC
Confidence 33567789999999999999999999998888877765 66655554 45555555555555554321
Q ss_pred -------cccchhhhHHHHHHHHHHHHHHHh
Q 013611 100 -------NLNWALGFGIPCAFMVAALVLFLL 123 (439)
Q Consensus 100 -------~~g~~~~F~i~~~~~~i~~~l~~~ 123 (439)
..=||..|.+.. +.+++++++
T Consensus 214 ~~~~~~ld~vWRl~~glg~---vpa~~~ly~ 241 (538)
T KOG0252|consen 214 PSTYPHLDGVWRIIFGLGA---VPALLVLYF 241 (538)
T ss_pred CCCchHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 245888888777 445544444
No 218
>PRK09528 lacY galactoside permease; Reviewed
Probab=96.98 E-value=0.0011 Score=67.05 Aligned_cols=86 Identities=10% Similarity=0.027 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHH-HHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNW-WYFGISFGANSTILVVIYIQDNLNWALGFGI 109 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~-~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i 109 (439)
+.+.+++.+.+.+++.+...+.....+.+.+|++. |++.++. +.+..++|.++|+.++|++.+.+||+..|.+
T Consensus 314 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~ 387 (420)
T PRK09528 314 GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLI 387 (420)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHH
Confidence 45566777888888888888888888899998765 7777665 6677899999999999999999999999998
Q ss_pred HHHHHHHHHHHHH
Q 013611 110 PCAFMVAALVLFL 122 (439)
Q Consensus 110 ~~~~~~i~~~l~~ 122 (439)
.++..++..++.+
T Consensus 388 ~~~~~~i~~~~~~ 400 (420)
T PRK09528 388 LGGIVLLFTLISV 400 (420)
T ss_pred HHHHHHHHHHHHH
Confidence 7766665554443
No 219
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=96.97 E-value=0.0082 Score=59.34 Aligned_cols=94 Identities=15% Similarity=0.086 Sum_probs=69.0
Q ss_pred CchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChh
Q 013611 282 TMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE 361 (439)
Q Consensus 282 ~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~ 361 (439)
++++.+.++.++.+++.....+..... +. .....+.+++..+++|++.+...+....++.+..|++
T Consensus 63 g~r~~l~~~~~~~~~~~~~~~~~~~~~-----~~---------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~ 128 (394)
T TIGR00883 63 GRKKTLVITLLMMGIGTLLIGLLPSYA-----TI---------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPG 128 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhCCChh-----hh---------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcc
Confidence 344566778888877776666542100 00 0011234667778999999988888888999999999
Q ss_pred hHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611 362 LKSFGLSIYMSVLGVGGFLSSILVSIIN 389 (439)
Q Consensus 362 ~~g~~~gl~~~~~~iG~~ig~~l~~~~~ 389 (439)
.|+++++.......+|..+++.+...+.
T Consensus 129 ~r~~~~~~~~~~~~~G~~i~~~~~~~~~ 156 (394)
T TIGR00883 129 KRGFYGSFQQVGAPVGLLLAALTVLLLS 156 (394)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998877654
No 220
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=96.86 E-value=0.018 Score=60.09 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=88.5
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611 246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI 325 (439)
Q Consensus 246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (439)
+++.+...+...+..++.+++.+.+.|| +.+.++.++..++.++.+++
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk-----------~~l~~~~~~~~iG~ii~~~a--------------------- 139 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRK-----------KTLLLAVVLFLIGAIIIALA--------------------- 139 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence 6788888888888888888876655554 35677777777777777765
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 013611 326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSII 388 (439)
Q Consensus 326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~ 388 (439)
.+.++++...++.|+|-++......-++...+|++.||...+...+...+|..++ .+++..
T Consensus 140 -~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~ 200 (513)
T KOG0254|consen 140 -PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYG 200 (513)
T ss_pred -hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhh
Confidence 2678899999999999999987777899999999999999999999999888888 444444
No 221
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=96.82 E-value=0.0081 Score=59.94 Aligned_cols=125 Identities=17% Similarity=0.136 Sum_probs=90.4
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChh---
Q 013611 285 QRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE--- 361 (439)
Q Consensus 285 ~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~--- 361 (439)
+-+.+|.++..+|.+++...... +......+.+.+.+...+.++|.++.-|+...+..+|.+++
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~-------------~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~ 68 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIP-------------PSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDS 68 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTS-------------SSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTT
T ss_pred HhhhHHHHHHHHHHHHhHHHHhc-------------chhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchh
Confidence 45678888899998887665420 00001234466788888999999999999999999998866
Q ss_pred hHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhccCccC
Q 013611 362 LKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNRE 438 (439)
Q Consensus 362 ~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~~~~ 438 (439)
.+..+...++...++|..++..+.+.+.+. .++...|.+.++.++++.+.|+.-.++|+++
T Consensus 69 ~~~~~F~~fY~~in~G~~~~~~~~~~i~~~----------------~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 69 RRDSFFNWFYWGINIGSLFSPTLVPYIQQN----------------YGWFLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHC----------------S-HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred hhhhhHHHHHHHHhhhhHhhcccchhhccc----------------cchhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 566677888999999999998888877531 3456778888899999988888887777664
No 222
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=96.78 E-value=0.054 Score=54.08 Aligned_cols=61 Identities=8% Similarity=-0.074 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611 328 SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE 390 (439)
Q Consensus 328 ~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~ 390 (439)
+.|.+++..++++.+.....|.....+.+ ++++|++..|......++|..+++.+.+.+.+
T Consensus 93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~--~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~ 153 (382)
T TIGR00902 93 NAWLLFIAIGLFALFFSAGMPIGDALANT--WQKQFGLDYGKVRLIGSAAFIIGSALFGGLIG 153 (382)
T ss_pred hHHHHHHHHHHHHHHHccchhHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777887777666666555543 46788999999999999999999999998864
No 223
>PRK09669 putative symporter YagG; Provisional
Probab=96.76 E-value=0.03 Score=57.19 Aligned_cols=121 Identities=8% Similarity=0.012 Sum_probs=76.1
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611 246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI 325 (439)
Q Consensus 246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (439)
+.+..+.-++-.+.-|+.+.+.|+...|+++ .++.+..|.+..++++.+..... +...
T Consensus 48 g~i~~i~~i~dai~dp~~G~lsD~~~~r~Gr------rrp~il~~~~~~~i~~~l~f~~p----------------~~~~ 105 (444)
T PRK09669 48 GTMFLVVRVLDAVTDPLMGALVDRTRTRHGQ------FRPYLLWFAIPFGVVCLLTFYTP----------------DFGA 105 (444)
T ss_pred HHHHHHHHHHHHcccceeeEeeecCCCCCCC------cchhHHHHHHHHHHHHHHHHhCC----------------CCCc
Confidence 3444555555666677777777655544421 12345566666666654433221 0001
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhc-ChhhHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 013611 326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQI-PKELKSFGLSIYMSVLGVGGFLSSILVSII 388 (439)
Q Consensus 326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~a-P~~~~g~~~gl~~~~~~iG~~ig~~l~~~~ 388 (439)
....+|..+.+++.+.+..+..++..+...... +.+.|+..++.-....++|+.+++.+...+
T Consensus 106 ~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl 169 (444)
T PRK09669 106 TGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPL 169 (444)
T ss_pred chHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 124567777777777777777777777777776 567899998988888889888887765544
No 224
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.70 E-value=0.018 Score=61.36 Aligned_cols=150 Identities=18% Similarity=0.178 Sum_probs=105.9
Q ss_pred CchhHHhHHHHHHHHHHHHHHHHHHH--HHHHHhhh-------C--------------CCCC---CC---CCCcc-hHHH
Q 013611 282 TMLQRIGAGMLLSSISMVVAALVEIK--RLETAKEY-------G--------------LIDK---PN---VTIPT-SVWW 331 (439)
Q Consensus 282 ~~~~~i~iG~~l~~i~~~~~~~~~~~--~~~~~~~~-------~--------------~~~~---~~---~~~~~-~~~~ 331 (439)
+..+.+++|.++++++.++.++.+-. .|+.+.+. . .+.. +. +..+. .+..
T Consensus 160 HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 239 (735)
T KOG3626|consen 160 HRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLL 239 (735)
T ss_pred CccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHH
Confidence 55678899999999999888766431 22222111 0 0000 00 11122 3346
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhcc-----cc----CCCCCCCCC
Q 013611 332 LIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEA-----TS----RDGGDSWFA 402 (439)
Q Consensus 332 ~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~-----~~----~~~~~~~~~ 402 (439)
+++++++.|+|+-...+-+..++.+.+-++..+.+.|+.+.++.+|-++|-+++++.... .+ .+.+.+|+
T Consensus 240 ff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWI- 318 (735)
T KOG3626|consen 240 FFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWI- 318 (735)
T ss_pred HHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchh-
Confidence 778889999999999888889999999999999999999999999999999888877422 01 01124553
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHHHHHHhccCcc
Q 013611 403 DNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNR 437 (439)
Q Consensus 403 ~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~~~ 437 (439)
|-.+.-|.+.+.+.+++.+-++++-|.+++
T Consensus 319 -----GAWWlGFLi~g~~~~~~a~p~f~fPk~lp~ 348 (735)
T KOG3626|consen 319 -----GAWWLGFLICGALLLFSAVPLFFFPKELPK 348 (735)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHHhCcccCcc
Confidence 445556888899999999999988887764
No 225
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=96.67 E-value=0.78 Score=46.06 Aligned_cols=62 Identities=18% Similarity=0.248 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611 328 SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN 389 (439)
Q Consensus 328 ~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~ 389 (439)
++|.+.+..+..|+-.+.+-++....+.++.|++.|-.++|.....-++|-.+++.++-.+.
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 46656566677788888888888889999999999999999999999999998887765553
No 226
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=96.55 E-value=0.26 Score=49.09 Aligned_cols=99 Identities=19% Similarity=0.177 Sum_probs=71.5
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHH--HHHHHHHHHHHHHHHHhhhhHHHHHhhcCh
Q 013611 283 MLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVW--WLIPQYLLCGIADVFTIVGLQEFFYDQIPK 360 (439)
Q Consensus 283 ~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~l~gige~l~~~~~~~~~~~~aP~ 360 (439)
....+..|..+.+.+...+.+.-...-+ ..+++ ..+...+ ...+.+++.|+|......+..+.+.+.+|+
T Consensus 49 RtPyI~~G~~~~~~g~~~ap~a~~~l~~-------~~~~~-~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e 120 (403)
T PF03209_consen 49 RTPYIWGGTLLQAGGLAIAPFALLLLAE-------SGQQS-SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPE 120 (403)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHcc-------ccccc-ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCH
Confidence 3446778888888887777665432110 00000 0111222 345666778888888899999999999999
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611 361 ELKSFGLSIYMSVLGVGGFLSSILVSIIN 389 (439)
Q Consensus 361 ~~~g~~~gl~~~~~~iG~~ig~~l~~~~~ 389 (439)
+.|+.+.++.+.+.-+|..++..+.+.+-
T Consensus 121 ~~R~~~v~ivw~Mli~G~iv~ai~~g~lL 149 (403)
T PF03209_consen 121 ERRPRVVAIVWVMLIVGIIVSAIVFGRLL 149 (403)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999888764
No 227
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=96.49 E-value=0.0095 Score=61.49 Aligned_cols=87 Identities=15% Similarity=0.194 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc-chhhhHH
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLN-WALGFGI 109 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g-~~~~F~i 109 (439)
+.+.+++.=++.|+..|..++...++.++..|+++ .+.+|+++....-..+.+||++.|.+.+..| .|++|..
T Consensus 379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~ 452 (477)
T PF11700_consen 379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLF 452 (477)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence 34446666678999999999999999999999987 7899999999999999999999999988765 8999998
Q ss_pred HHHHHHHHHHHHHh
Q 013611 110 PCAFMVAALVLFLL 123 (439)
Q Consensus 110 ~~~~~~i~~~l~~~ 123 (439)
..+..++++++.+.
T Consensus 453 l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 453 LLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHHHHHHhh
Confidence 88888888876643
No 228
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=96.48 E-value=0.047 Score=56.82 Aligned_cols=134 Identities=14% Similarity=0.164 Sum_probs=99.2
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.+|+.++......+..|+...+. +|+ +.+..+.+|.++.++|+++..+..
T Consensus 83 ~~~i~sl~~~~~~~~gpl~s~l~----~rf-------g~R~v~i~G~~v~~~g~~lssF~~------------------- 132 (509)
T KOG2504|consen 83 IAWIGSLLLGVYLLAGPLVSALC----NRF-------GCRTVMIAGGLVAALGLLLSSFAT------------------- 132 (509)
T ss_pred HHHHHHHHHHHHHHhccHHHHHH----hhc-------CchHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 67888888888888888877764 343 455678899999999999998873
Q ss_pred CcchHHHHHHHH-HHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCC
Q 013611 325 IPTSVWWLIPQY-LLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFAD 403 (439)
Q Consensus 325 ~~~~~~~~i~~~-~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~ 403 (439)
++|.+++.+ ++.|+|.++...+.. .+...-.+++|++++|+.....++|..+-+.+...+.+.
T Consensus 133 ---~i~~l~lt~gvi~G~G~~~~~~pai-viv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~------------ 196 (509)
T KOG2504|consen 133 ---SLWQLYLTFGVIGGLGLGLIYLPAV-VILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSK------------ 196 (509)
T ss_pred ---hHHHHHHHHHHHhhccchhhhcchh-hhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHH------------
Confidence 577777666 778999999876664 344467788999999999999999999888887766532
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHH
Q 013611 404 NLNRAHLDYFYWLLAALSAGGLLAF 428 (439)
Q Consensus 404 ~l~~~~~~~~f~~~~~l~~l~~~i~ 428 (439)
.+..+.++.++.+++-..+.-
T Consensus 197 ----~G~r~~~l~~~~~~l~~~~~~ 217 (509)
T KOG2504|consen 197 ----YGWRGALLIFGGISLNVLVAG 217 (509)
T ss_pred ----hCcHHHHHHHHHHHHHHHHHH
Confidence 222556666666664443333
No 229
>PRK11462 putative transporter; Provisional
Probab=96.42 E-value=0.11 Score=53.55 Aligned_cols=111 Identities=13% Similarity=0.002 Sum_probs=75.9
Q ss_pred HHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHH
Q 013611 256 IITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQ 335 (439)
Q Consensus 256 iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 335 (439)
=.+.-|+.+.+.|+...|+++ .+..+.+|.+.+++++.++..... .+ ......|..+.
T Consensus 58 Dai~Dp~~G~~~D~t~~r~Gr------~rp~il~g~i~~~i~~~llf~~p~--------~s--------~~~~~~y~~~~ 115 (460)
T PRK11462 58 DAISDPCMGLLADRTRSRWGK------FRPWVLFGALPFGIVCVLAYSTPD--------LS--------MNGKMIYAAIT 115 (460)
T ss_pred HHHHhhhheehhccCCCCCCC------cchhHhHHHHHHHHHHHHHHhCCC--------CC--------cchHHHHHHHH
Confidence 344556666666654444322 234556777777777655442210 00 01125678888
Q ss_pred HHHHHHHHHHHhhhhHHHHHhhcC-hhhHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 013611 336 YLLCGIADVFTIVGLQEFFYDQIP-KELKSFGLSIYMSVLGVGGFLSSILVSII 388 (439)
Q Consensus 336 ~~l~gige~l~~~~~~~~~~~~aP-~~~~g~~~gl~~~~~~iG~~ig~~l~~~~ 388 (439)
+++..++.-+..++..+.....++ +++|+..++.-....++|+.+++.+...+
T Consensus 116 ~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~pl 169 (460)
T PRK11462 116 YTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPL 169 (460)
T ss_pred HHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999998888899999988 99999999999999999888887775544
No 230
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=96.31 E-value=1.5 Score=45.20 Aligned_cols=41 Identities=10% Similarity=0.137 Sum_probs=36.4
Q ss_pred chhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 013611 52 CTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQ 98 (439)
Q Consensus 52 ~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~ 98 (439)
.-.++..|.++.+| =.|.|+.++.+.|+|..+|+.+..++.
T Consensus 149 lFW~fandi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 149 LFWGFANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999876 568999999999999999999999876
No 231
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=96.30 E-value=0.075 Score=54.38 Aligned_cols=156 Identities=14% Similarity=0.096 Sum_probs=97.0
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
-|+......+...++.|+++.+-. |. .+.++-+.+|.+++.+|..+....+..
T Consensus 73 fG~viaa~slg~~i~~liF~~Ws~----k~------~~~k~Pli~s~ii~~~g~llY~~l~~~----------------- 125 (488)
T KOG2325|consen 73 FGLVIAASSLGHAIFSLIFGIWSN----KT------GSVKKPLIVSFLIAIIGNLLYLALAYV----------------- 125 (488)
T ss_pred hhHHHHHHHHHHHhcchhhccccc----cc------CCcccCHHHHHHHHHHHHHHHHHHHhc-----------------
Confidence 356667788888888888777532 21 133567889999999999988666531
Q ss_pred Ccc-hHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCC-
Q 013611 325 IPT-SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFA- 402 (439)
Q Consensus 325 ~~~-~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~- 402 (439)
+. ..|++.+++++.|+|.+-..+-= .++....-.+.|.++++.....+.+|..+||.+...+... .+++-.|++
T Consensus 126 -~~~~~y~mL~~R~l~Gvg~~n~a~lR-~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~L--g~~G~~i~~~ 201 (488)
T KOG2325|consen 126 -PNGVKYLMLVARILTGVGVGNFAVLR-AYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPL--GEKGFMILPG 201 (488)
T ss_pred -ccchHHHHHHHHHHcCcCcccHHHHH-HHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhh--cCCceEEcCc
Confidence 12 57889999999999966654333 3455544455566666666666667777777766655432 123345555
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611 403 DNLNRAHLDYFYWLLAALSAGGLLAFLYFAK 433 (439)
Q Consensus 403 ~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~ 433 (439)
..+|.+. .-=|+.+.+.++..++..+..+
T Consensus 202 ~~~n~YT--ap~w~m~i~~i~~~v~i~~~f~ 230 (488)
T KOG2325|consen 202 LIFNMYT--APAWLMAILWIIYIVIILFFFK 230 (488)
T ss_pred ceEEecc--hHHHHHHHHHHHHHHHHHhhee
Confidence 3444332 2234455566666666555544
No 232
>PRK10429 melibiose:sodium symporter; Provisional
Probab=96.09 E-value=0.23 Score=51.22 Aligned_cols=119 Identities=13% Similarity=0.082 Sum_probs=78.5
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611 246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI 325 (439)
Q Consensus 246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (439)
+.+..+..++-.+.-|+.+.+.|+...|+++ .+..+.+|.+..++++.++.... +.+.
T Consensus 45 g~i~~i~ri~dai~dp~~G~lsD~t~sr~Gr------rrp~il~g~i~~~i~~~llf~~p----------------~~~~ 102 (473)
T PRK10429 45 GTLFLVARIWDAINDPIMGWIVNNTRSRWGK------FKPWILIGTLANSVVLFLLFSAH----------------LFEG 102 (473)
T ss_pred HHHHHHHHHHHHHhhchheeehhcCCCCCCC------cchhHhhhhHHHHHHHHHHHcCC----------------CCCc
Confidence 4455666666677777778777765444422 23456677777777765553210 0000
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhc-ChhhHHHHHHHHHHHhhhhhhhhhHHHh
Q 013611 326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQI-PKELKSFGLSIYMSVLGVGGFLSSILVS 386 (439)
Q Consensus 326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~a-P~~~~g~~~gl~~~~~~iG~~ig~~l~~ 386 (439)
....+|..+.+++..++.-+..++..+.....+ +++.|....+.-....++|+.+.+.+..
T Consensus 103 ~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~ 164 (473)
T PRK10429 103 TAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTL 164 (473)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123567778888888888888888888999988 5899999888867777777666655544
No 233
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=96.09 E-value=0.12 Score=44.67 Aligned_cols=62 Identities=11% Similarity=0.184 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611 328 SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN 389 (439)
Q Consensus 328 ~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~ 389 (439)
+.+.+++.-++.|+|..+.+++.-.++.+...++.+++..|++....+.+..+|..+.-.+.
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999998899999999999999999999999998888876655543
No 234
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=96.01 E-value=0.019 Score=57.47 Aligned_cols=75 Identities=12% Similarity=0.002 Sum_probs=60.3
Q ss_pred HHHHHHhccCCccchhhhhhccCCC-CChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHH
Q 013611 39 LYLVAIGQGGHKPCTQAFGADQFDA-QNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAA 117 (439)
Q Consensus 39 l~l~gig~g~~~p~~~a~~~~~f~~-~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~~~~~~i~ 117 (439)
..+.+++.|...+...+...+..++ +. +++.++......++|..+||.++|++.+..||+..|.+.++..+++
T Consensus 310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a 383 (390)
T TIGR02718 310 SAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLA 383 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 3444556677777777777777765 44 8999999999999999999999999999999999999888666655
Q ss_pred HH
Q 013611 118 LV 119 (439)
Q Consensus 118 ~~ 119 (439)
..
T Consensus 384 ~~ 385 (390)
T TIGR02718 384 IL 385 (390)
T ss_pred HH
Confidence 44
No 235
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=95.88 E-value=0.023 Score=57.32 Aligned_cols=82 Identities=12% Similarity=0.101 Sum_probs=64.8
Q ss_pred HHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHH-HHHHHHHHHHHHhhhcccchh------hhH
Q 013611 36 IFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGIS-FGANSTILVVIYIQDNLNWAL------GFG 108 (439)
Q Consensus 36 ~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~n-lG~~ig~~l~g~l~~~~g~~~------~F~ 108 (439)
..+..+.|+..|.+.+....++.+..|++. |.++.+++....+ +|.++|..++|++.+.+|-+. .|.
T Consensus 305 ~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~ 378 (400)
T PF03825_consen 305 LLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFL 378 (400)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 334456899999999999999999999988 9999999988655 999999999999999877664 445
Q ss_pred HHHHHHHHHHHHHHh
Q 013611 109 IPCAFMVAALVLFLL 123 (439)
Q Consensus 109 i~~~~~~i~~~l~~~ 123 (439)
++++..++..+++++
T Consensus 379 v~a~~~~~~~~~f~~ 393 (400)
T PF03825_consen 379 VFAVMALVILVLFVI 393 (400)
T ss_pred HHHHHHHHHHHHHHh
Confidence 555555555555544
No 236
>PF13347 MFS_2: MFS/sugar transport protein
Probab=95.73 E-value=0.053 Score=55.07 Aligned_cols=157 Identities=17% Similarity=0.170 Sum_probs=97.6
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcch
Q 013611 249 QLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTS 328 (439)
Q Consensus 249 ~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (439)
..+..++-.+.-|+.+.+.|+...|+++ .+..+.+|.+..++++.++...... +......
T Consensus 43 ~~~~~i~dai~dp~~G~~sDr~~tr~Gr------rrp~~l~g~i~~~~~~~llf~~~p~--------------~~~~~~~ 102 (428)
T PF13347_consen 43 LLVGRIWDAITDPLIGYLSDRTRTRWGR------RRPWILIGAILLALSFFLLFSPPPA--------------GLSFTAK 102 (428)
T ss_pred HHHHHHhhhhcCCcEEEEEeeecccccc------cceEeehhhHHHHHHHHHhhccccc--------------hhhhhhH
Confidence 3333444444455555555543333321 2335567888888887777644110 0000124
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHhhcC-hhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCccc
Q 013611 329 VWWLIPQYLLCGIADVFTIVGLQEFFYDQIP-KELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNR 407 (439)
Q Consensus 329 ~~~~i~~~~l~gige~l~~~~~~~~~~~~aP-~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~ 407 (439)
..|+.+.+++..++.-...++..+...+.++ ++.|...++.-.+...+|+.+...+.+.+....+ +.-..
T Consensus 103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g---------~~~~~ 173 (428)
T PF13347_consen 103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFG---------GGDTS 173 (428)
T ss_pred HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhc---------cCccc
Confidence 5667788888888888888888888889998 6789999999999999988766666665542211 11111
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhcc
Q 013611 408 AHLDYFYWLLAALSAGGLLAFLYFAKS 434 (439)
Q Consensus 408 ~~~~~~f~~~~~l~~l~~~i~~~~~~~ 434 (439)
.++.....+.+++.+++.++..+..|.
T Consensus 174 ~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 174 NGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 145666677777777777776666665
No 237
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=95.65 E-value=0.46 Score=48.89 Aligned_cols=59 Identities=20% Similarity=0.165 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHh
Q 013611 328 SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVS 386 (439)
Q Consensus 328 ~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~ 386 (439)
+...++...++.|+..++......-++...+|++.||.+..+..+...+|..+|..++.
T Consensus 115 ~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l 173 (485)
T KOG0569|consen 115 SFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGL 173 (485)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHcc
Confidence 56778899999999999987777779999999999999999999999998888865543
No 238
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=95.57 E-value=0.27 Score=48.17 Aligned_cols=116 Identities=21% Similarity=0.225 Sum_probs=84.6
Q ss_pred CCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCh
Q 013611 281 ITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPK 360 (439)
Q Consensus 281 ~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~ 360 (439)
++..+.+..++++.+++..+=... +.+.+....++.|.|-....+-+...+-+.-|+
T Consensus 74 ~g~er~l~~~Llli~~G~~iR~~~-----------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk 130 (395)
T COG2807 74 FGEERSLFLALLLIAAGILIRSLG-----------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK 130 (395)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcc-----------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc
Confidence 466777788887777765432221 355577888888999988888888889999987
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhccC
Q 013611 361 ELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSY 435 (439)
Q Consensus 361 ~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~ 435 (439)
+ .+.+||+|....++|+++++.+.--+.+.. ++| .....+-+..++++.++++--..|+
T Consensus 131 ~-~~~mtglYs~sl~~~aaLaa~lavpla~~~-----~gW----------~~aL~~WAl~allAl~~WlPq~~r~ 189 (395)
T COG2807 131 R-VGLMTGLYSTSLGAGAALAAALAVPLAQHS-----GGW----------RGALGFWALLALLALLIWLPQALRE 189 (395)
T ss_pred c-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhh-----ccH----------HHHHHHHHHHHHHHHHHHhhhcccc
Confidence 6 688999999999999999998887776422 134 3445555677888877777664443
No 239
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=95.55 E-value=0.096 Score=50.89 Aligned_cols=62 Identities=8% Similarity=0.022 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611 328 SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN 389 (439)
Q Consensus 328 ~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~ 389 (439)
+.+++++..++.|.|..+..+..+.++....|++.+++.+++...++++|..+||.+++.+.
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i 70 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI 70 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 57788999999999999999999999999999999999999999999999999999999775
No 240
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=95.52 E-value=0.04 Score=56.02 Aligned_cols=120 Identities=16% Similarity=0.176 Sum_probs=94.0
Q ss_pred CchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChh
Q 013611 282 TMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE 361 (439)
Q Consensus 282 ~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~ 361 (439)
..++-+..|.+++++|.++++..+. .+...+.+..+++++|.++.-++......++-|++
T Consensus 90 G~~~tI~lGail~~iGh~~L~~~~~--------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~ 149 (498)
T COG3104 90 GTRRTIVLGAILMAIGHLVLAISSV--------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKD 149 (498)
T ss_pred chhHHHHHHHHHHHHHHHHHhcccc--------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCC
Confidence 4556889999999999888886520 12444678888889999999888888888887643
Q ss_pred h--HHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhccCcc
Q 013611 362 L--KSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNR 437 (439)
Q Consensus 362 ~--~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~~~ 437 (439)
. |-...+++++..++|+.++|.+.+.+.+ | .++...|.+.+..+.++.+.|++..|+++.
T Consensus 150 DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~---------~-------~g~~~gF~~aavGm~~gl~~f~~~~r~~~~ 211 (498)
T COG3104 150 DPRRDGGFTLFYMGINIGSLIAPIITGLLAI---------N-------YGWHVGFGLAAVGMIIGLVIFLLGRRHVKG 211 (498)
T ss_pred CcccCCCccEEEEEeehHHHHHHHHHHHHHH---------h-------hCHHHHHHHHHHHHHHHHHHHHHccchhcC
Confidence 2 5556888888999999999999998863 1 445778888899999999999988887754
No 241
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=95.21 E-value=0.39 Score=50.09 Aligned_cols=102 Identities=17% Similarity=0.304 Sum_probs=75.9
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHH
Q 013611 285 QRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKS 364 (439)
Q Consensus 285 ~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g 364 (439)
+.+.+++++..++-+..++. .+++.+++...+.|++.............+..+++.|+
T Consensus 149 ~~~~~~~~~~~i~~~~~a~a----------------------~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~ 206 (521)
T KOG0255|consen 149 PVLLVSLLLFIIFGILTAFA----------------------PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRG 206 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHh----------------------CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhh
Confidence 45566666666555444444 36888899999999999999888888999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 013611 365 FGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLA 427 (439)
Q Consensus 365 ~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i 427 (439)
.++.+ ......++.+++.+++.+.. +| .+.++...+..++..+.
T Consensus 207 ~~~~~-~~~~~~~~~~~~~~~a~~~~--------~W----------r~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 207 LALTL-GGFFFVGGLMLPAGAAYITR--------DW----------RWLFWIISIPSGLFLLL 250 (521)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHh--------hH----------HHHHHHHHHHHHHHHHH
Confidence 99999 77777778888888787752 34 45566666655555444
No 242
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=94.56 E-value=1.4 Score=43.86 Aligned_cols=91 Identities=14% Similarity=0.116 Sum_probs=75.8
Q ss_pred CCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCh
Q 013611 281 ITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPK 360 (439)
Q Consensus 281 ~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~ 360 (439)
.+.++-+.+|+.++++++.+..-+... -++..++....+.+.|.++.-.+.+.++....|+
T Consensus 75 ~gyk~gi~lgL~l~avg~~lF~pAa~~-------------------~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~ 135 (422)
T COG0738 75 LGYKAGIVLGLLLYAVGAALFWPAASS-------------------KSYGFFLVALFILASGIGLLETAANPYVTLLGKP 135 (422)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhh-------------------hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCc
Confidence 356678899999999998887654321 2455566777889999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611 361 ELKSFGLSIYMSVLGVGGFLSSILVSIINE 390 (439)
Q Consensus 361 ~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~ 390 (439)
+..+.=+.+....+.+|..+||.+++.+..
T Consensus 136 ~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 136 ESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999997754
No 243
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=93.86 E-value=2.3 Score=39.91 Aligned_cols=121 Identities=17% Similarity=0.179 Sum_probs=77.8
Q ss_pred CchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChh
Q 013611 282 TMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE 361 (439)
Q Consensus 282 ~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~ 361 (439)
++...+.+|.+...+|+.+....-. +.+ ...+.|.+.+...+.+.|......+......++-|.
T Consensus 64 gp~~~l~iG~~~~~~GY~~~~l~~~---------~~i------~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~- 127 (250)
T PF06813_consen 64 GPWVVLLIGAVLGFVGYGLLWLAVS---------GRI------PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR- 127 (250)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHh---------Ccc------CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-
Confidence 4556678898888888877765531 100 123566666666777777776666655667788885
Q ss_pred hHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhccC
Q 013611 362 LKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSY 435 (439)
Q Consensus 362 ~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~ 435 (439)
.||++.|+.-...++++++-..+...+.+ .+...++.+++....+..++.....|..
T Consensus 128 ~RG~vvgilk~~~GLSaai~t~i~~~~f~-----------------~~~~~fll~la~~~~~v~l~~~~~vr~~ 184 (250)
T PF06813_consen 128 SRGTVVGILKGFFGLSAAIFTQIYSAFFG-----------------DDPSSFLLFLAVLPAVVCLVAMFFVRPV 184 (250)
T ss_pred ccCceehhhhHHHHhHHHHHHHHHHHHcC-----------------CChHHHHHHHHHHHHHHHHHHhhheecc
Confidence 69999999999999999986665555532 1223455566655554444444444443
No 244
>PRK09848 glucuronide transporter; Provisional
Probab=93.83 E-value=0.19 Score=51.33 Aligned_cols=73 Identities=18% Similarity=0.196 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhh-HhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQE-RRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNW 103 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~-~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~ 103 (439)
+.+.+++..++.++|.++..+...++.+|..+.+|-+. .++++.+++.+.+...+|..+|+.+.+++.+..||
T Consensus 318 ~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 318 SLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45567777888999999999999999999987654211 12258888999999999999999999988766666
No 245
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=93.70 E-value=7.3 Score=39.72 Aligned_cols=62 Identities=16% Similarity=0.154 Sum_probs=48.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 013611 327 TSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSII 388 (439)
Q Consensus 327 ~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~ 388 (439)
.+...++...++.=+|.-..-.....+.++.+|++.||+..|+-+..+++-..+.-.++-.+
T Consensus 354 ~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 354 ISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45555666667777777777778888999999999999999999999998888766554444
No 246
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=93.45 E-value=0.41 Score=48.33 Aligned_cols=167 Identities=17% Similarity=0.110 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCC
Q 013611 200 KALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPS 279 (439)
Q Consensus 200 k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~ 279 (439)
+++.+...+..+.-+.|....+..+.+.++. ..+.. -.+..+..-|+.-++.+|+.+...++...|+++|
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~l-Gvphk-------~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRR-- 101 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQSL-GVPHK-------WSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRR-- 101 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHc-CCCcc-------cccccccccccccceecccccccccccccccccc--
Confidence 3344444455556667776666555444322 11111 1234566678888999999999999988887544
Q ss_pred CCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC-CCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhc
Q 013611 280 GITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNV-TIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQI 358 (439)
Q Consensus 280 ~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~a 358 (439)
+.-+..+-++.++++++.+++.-. . ....|++.. ..+-.+...++...+.-++.-...-+.-++..+.+
T Consensus 102 ----RPfI~~~s~~i~~~l~Lig~aaDi----g--~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~ 171 (498)
T KOG0637|consen 102 ----RPFILAGSLLIAVSLFLIGYAADI----G--LLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLA 171 (498)
T ss_pred ----cchHHHhhHHHHHHHhhhhhHhhh----h--HHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhc
Confidence 335677888888888877766421 1 112233221 11223333444555555555445555556677776
Q ss_pred ChhhHHH-HHHHHHHHhhhhhhhhhHHHh
Q 013611 359 PKELKSF-GLSIYMSVLGVGGFLSSILVS 386 (439)
Q Consensus 359 P~~~~g~-~~gl~~~~~~iG~~ig~~l~~ 386 (439)
-.+.|-+ +.+.+.++.++|+.+|-.+.+
T Consensus 172 ~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 172 RGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred cChhhhhccchhHHHHHHhcceeeeeccc
Confidence 5555555 999999999999999876655
No 247
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=93.36 E-value=1.6 Score=44.08 Aligned_cols=120 Identities=13% Similarity=0.097 Sum_probs=75.1
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
..|++.+.-+.-+.++....++ .+|+ +.+.-..+|.++.+++..+=..... |-
T Consensus 81 ~~wlsmIym~v~vp~gf~~mw~----ldk~-------GLR~a~llgt~ln~iGa~Ir~iss~--------------p~-- 133 (480)
T KOG2563|consen 81 ADWLSMIYMVVSVPFGFAAMWI----LDKF-------GLRTALLLGTVLNGIGAWIRLISSL--------------PF-- 133 (480)
T ss_pred HHHHHHHHHHHHHHHhhHHHHh----hccc-------chHHHHHHHHHHHHHHHHHhhhccC--------------cc--
Confidence 4566655555555554444554 3443 3445566677776666544333211 00
Q ss_pred CcchHH--HHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhcc
Q 013611 325 IPTSVW--WLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEA 391 (439)
Q Consensus 325 ~~~~~~--~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~ 391 (439)
.+...+ .....+.+.+.++.++..--.-.+..--|++.|+.+..+-.+.+.+|.++|..+-..+...
T Consensus 134 v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 134 VPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred ccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 011233 4566777788888876433235677789999999999999999999999888777777643
No 248
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=93.13 E-value=0.28 Score=45.60 Aligned_cols=80 Identities=14% Similarity=0.237 Sum_probs=65.7
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCC-CChhhHhhhhhhHHHHHH-HHHHHHHHHHHHHHHhhhc--ccchh
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDA-QNPQERRAKSSFFNWWYF-GISFGANSTILVVIYIQDN--LNWAL 105 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~-~~~~~~~~r~~~f~~~y~-~~nlG~~ig~~l~g~l~~~--~g~~~ 105 (439)
.....+.+.|.+.|++.|...|...+++.+.+++ ++ |....+.... ...+|..+++.+++.+... .+|++
T Consensus 92 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (338)
T COG0477 92 VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRA 165 (338)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 4677888899999999999999999999999997 33 8889999988 5889999999888877654 68888
Q ss_pred hhHHHHHHHH
Q 013611 106 GFGIPCAFMV 115 (439)
Q Consensus 106 ~F~i~~~~~~ 115 (439)
.|.+......
T Consensus 166 ~~~~~~~~~~ 175 (338)
T COG0477 166 AFLLAALLGL 175 (338)
T ss_pred HHHHHHHHHH
Confidence 7766664443
No 249
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=92.81 E-value=1.6 Score=44.78 Aligned_cols=64 Identities=14% Similarity=0.206 Sum_probs=52.8
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcC-hhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611 327 TSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIP-KELKSFGLSIYMSVLGVGGFLSSILVSIINE 390 (439)
Q Consensus 327 ~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP-~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~ 390 (439)
....+..+.|++.+++.-++.++-.+.....++ +++|....+..+...++|+.+...+...+..
T Consensus 110 ~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~ 174 (467)
T COG2211 110 GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVK 174 (467)
T ss_pred cchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888999999999988888788887776 7889999999999999998888777766653
No 250
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=92.74 E-value=4.4 Score=39.87 Aligned_cols=102 Identities=21% Similarity=0.205 Sum_probs=65.6
Q ss_pred ccC-CCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCC-hhhHhhhhhhHHHHH-HHHHHHHHHHHHHHHHhhhc
Q 013611 24 SCS-PHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQN-PQERRAKSSFFNWWY-FGISFGANSTILVVIYIQDN 100 (439)
Q Consensus 24 ~~~-~~~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~-~~~~~~r~~~f~~~y-~~~nlG~~ig~~l~g~l~~~ 100 (439)
+|. -...+.+.++++|++-|+++....++-.+-......+++ |++ .+..-|+... ..+.+-+.++-+++-++.+.
T Consensus 112 scl~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~--~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~ 189 (354)
T PF05631_consen 112 SCLTKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQE--WLSDTFSLATFFGNGVVAIGAGVVANVLADW 189 (354)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHH
Confidence 344 445578999999999999999988877765544443332 221 1444555444 23334455555666666665
Q ss_pred ccc--hhhhHHHHHHHHHHHHHHHhcCcc
Q 013611 101 LNW--ALGFGIPCAFMVAALVLFLLGTKT 127 (439)
Q Consensus 101 ~g~--~~~F~i~~~~~~i~~~l~~~~~~~ 127 (439)
.+. ...|..+.+...++.++....+++
T Consensus 190 ~~~g~vaPF~~a~~~l~~~~~~I~~~W~E 218 (354)
T PF05631_consen 190 FGFGPVAPFDAAIVLLAVAAVLILKTWPE 218 (354)
T ss_pred hCCCCcchHHHHHHHHHHHHHHHHhcccc
Confidence 544 789999988888877766555553
No 251
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=92.67 E-value=4.7 Score=38.21 Aligned_cols=44 Identities=14% Similarity=0.155 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhh
Q 013611 333 IPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGV 376 (439)
Q Consensus 333 i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~i 376 (439)
.+.+.+.-.+-++.+|...-+-.+..|++.|++.|..+-.--++
T Consensus 348 ~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLni 391 (454)
T KOG4332|consen 348 LIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNI 391 (454)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhH
Confidence 45566666778889999998899999999999988776554444
No 252
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=90.94 E-value=4.1 Score=41.13 Aligned_cols=31 Identities=10% Similarity=-0.046 Sum_probs=25.2
Q ss_pred ccchhhhhhHHHHHHHHHHhhhhhhhhhccc
Q 013611 243 IPAASLQLFIGIGIITFIPIYDCIFVPITRY 273 (439)
Q Consensus 243 ~~~~~~~~in~~~iii~~pl~~~~~~~~~~k 273 (439)
...|.+-+++.+.-++..|+.+.+.+|+..|
T Consensus 43 ~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~k 73 (412)
T PF01306_consen 43 TEIGIIFSAGSLFALLAQPVYGFISDKLGLK 73 (412)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhcchhhhh
Confidence 3456788899999999999999988876654
No 253
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=90.71 E-value=0.38 Score=45.67 Aligned_cols=81 Identities=9% Similarity=0.016 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc---chhhhHHHH
Q 013611 35 FIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLN---WALGFGIPC 111 (439)
Q Consensus 35 ~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g---~~~~F~i~~ 111 (439)
=++++.++|+...+.--...+.++...|+++ .+++++..+.-.|+|-++-|++.|++.+.-| |--+|.+..
T Consensus 355 Py~~m~~lGLsysllAcslWP~va~~vpE~q------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~ 428 (459)
T KOG4686|consen 355 PYTSMTFLGLSYSLLACSLWPCVASLVPEEQ------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLII 428 (459)
T ss_pred HHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH------hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHH
Confidence 3567778888888776668888899999877 9999999999999999999999999988533 444555544
Q ss_pred HHH-HHHHHHH
Q 013611 112 AFM-VAALVLF 121 (439)
Q Consensus 112 ~~~-~i~~~l~ 121 (439)
..+ +++..+.
T Consensus 429 ~~~aL~svgil 439 (459)
T KOG4686|consen 429 GLMALTSVGIL 439 (459)
T ss_pred HHHHHHHHHHH
Confidence 443 3344333
No 254
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=90.19 E-value=8.8 Score=39.52 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=52.6
Q ss_pred HhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 013611 346 TIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGL 425 (439)
Q Consensus 346 ~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~ 425 (439)
+....++++.+.+..+.|....|+.+.....+..+++++++..... .++...|++.++..+++.
T Consensus 129 ~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~----------------~~~a~~f~ia~~~~~~~~ 192 (463)
T KOG2816|consen 129 IFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKF----------------LGIALVFLIAAASGILSL 192 (463)
T ss_pred hhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh----------------cCchHHHHHHHHHHHHHH
Confidence 4566668899999999999999999999999999999999988632 334555666666555554
Q ss_pred HHHHHH
Q 013611 426 LAFLYF 431 (439)
Q Consensus 426 ~i~~~~ 431 (439)
+..++.
T Consensus 193 ~y~~~~ 198 (463)
T KOG2816|consen 193 LYMLLF 198 (463)
T ss_pred HHHhhc
Confidence 444433
No 255
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=90.06 E-value=0.79 Score=47.31 Aligned_cols=71 Identities=7% Similarity=-0.073 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc-----chhhhHH
Q 013611 35 FIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLN-----WALGFGI 109 (439)
Q Consensus 35 ~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g-----~~~~F~i 109 (439)
....-++.+++.|........+..+..|++. +++.++++....|+|..+|+.+++++.+..| ++..|..
T Consensus 354 ~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~ 427 (468)
T TIGR00788 354 VLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLL 427 (468)
T ss_pred eeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHH
Confidence 3444566777777877778999999999887 8999999999999999999999999999887 7765554
Q ss_pred HH
Q 013611 110 PC 111 (439)
Q Consensus 110 ~~ 111 (439)
..
T Consensus 428 i~ 429 (468)
T TIGR00788 428 IL 429 (468)
T ss_pred HH
Confidence 33
No 256
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=89.21 E-value=0.65 Score=46.52 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=64.7
Q ss_pred HHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc-ccchhhhHHHHHHHH
Q 013611 37 FSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDN-LNWALGFGIPCAFMV 115 (439)
Q Consensus 37 ~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~-~g~~~~F~i~~~~~~ 115 (439)
+.=+++|+..|..+....++.++..|+++ -+++|+++.+.--.++.+||.+.+.+.+. -+-|..+..-.+...
T Consensus 346 i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~ 419 (438)
T COG2270 346 ILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLL 419 (438)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 33367999999999999999999999988 67899999999999999999999988763 345666666666666
Q ss_pred HHHHHH
Q 013611 116 AALVLF 121 (439)
Q Consensus 116 i~~~l~ 121 (439)
+++++.
T Consensus 420 iGl~~L 425 (438)
T COG2270 420 IGLLLL 425 (438)
T ss_pred hhHhhE
Confidence 666554
No 257
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=88.65 E-value=4.6 Score=41.23 Aligned_cols=88 Identities=20% Similarity=0.226 Sum_probs=56.4
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHH---HhhcCh
Q 013611 284 LQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFF---YDQIPK 360 (439)
Q Consensus 284 ~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~---~~~aP~ 360 (439)
+.-+.+|.++.+++...++..... ..+........++..+|..+.-+..-+.. .+.-|.
T Consensus 59 ~~Y~~i~~~~~~~~~~~~~~~~~~------------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~ 120 (433)
T PF03092_consen 59 KPYMIIGWLLGAVSALVLALLPAS------------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE 120 (433)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccc------------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc
Confidence 345566766665555555543210 12333444555667777777644443333 344666
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611 361 ELKSFGLSIYMSVLGVGGFLSSILVSIINE 390 (439)
Q Consensus 361 ~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~ 390 (439)
+ +|..++..+..+.+|+.++..++|...+
T Consensus 121 ~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~ 149 (433)
T PF03092_consen 121 S-RGDLQSFVWGVRSVGSLVGSLLSGPLLD 149 (433)
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 6 8999999999999999999999887754
No 258
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=88.26 E-value=35 Score=35.46 Aligned_cols=41 Identities=12% Similarity=0.230 Sum_probs=35.1
Q ss_pred hhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 013611 53 TQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD 99 (439)
Q Consensus 53 ~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~ 99 (439)
-.++..+.++.+| =.|.++.+..+.|+|.+++..+..++.+
T Consensus 165 FW~fAN~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 165 FWGFANEITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888766 5689999999999999999998888877
No 259
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=87.45 E-value=2.4 Score=43.13 Aligned_cols=123 Identities=16% Similarity=0.122 Sum_probs=79.1
Q ss_pred cccchhhhhhHHHH---HHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 013611 242 KIPAASLQLFIGIG---IITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLI 318 (439)
Q Consensus 242 ~~~~~~~~~in~~~---iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 318 (439)
..|++....+|... .++.+.+++++-+++.||+ ....-++++.++-++.+... +
T Consensus 80 ~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~-----------vYG~~liImIi~t~~~~~s~----------~-- 136 (538)
T KOG0252|consen 80 HYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK-----------VYGKELIIMIICSALSGLSV----------G-- 136 (538)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh-----------hhhHHHHHHHHHHHHhccCC----------C--
Confidence 36776666666554 4455555555555444432 33444555555544322211 1
Q ss_pred CCCCCCCc-chHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhcc
Q 013611 319 DKPNVTIP-TSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEA 391 (439)
Q Consensus 319 ~~~~~~~~-~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~ 391 (439)
.+.+ --.+|+...-.++|+|-+.=-|-...+....+-++.||...+..+.++++|-..|..+.-.+...
T Consensus 137 ----~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~ 206 (538)
T KOG0252|consen 137 ----TTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAI 206 (538)
T ss_pred ----CCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHH
Confidence 0111 12577888889999999997777767888889999999999999999999888877666555433
No 260
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=87.25 E-value=29 Score=34.76 Aligned_cols=59 Identities=12% Similarity=0.149 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611 332 LIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE 390 (439)
Q Consensus 332 ~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~ 390 (439)
.+.+|.+.+.-.-..+++.+++..+.+|+...|++|.+.+.-.++|+.-=..+...+.+
T Consensus 372 ~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D 430 (510)
T KOG3574|consen 372 LITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLAD 430 (510)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcc
Confidence 44556666666666688888999999999999999999999999998877666666653
No 261
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=87.19 E-value=0.02 Score=58.44 Aligned_cols=84 Identities=19% Similarity=0.244 Sum_probs=64.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHH
Q 013611 286 RIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSF 365 (439)
Q Consensus 286 ~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~ 365 (439)
-+.++.++..++.++..+... ..+.+.+.+..++.|+|-+...+....++.+.+|++.||.
T Consensus 78 ~~~~~~~~~~i~~~~~~~~~~-------------------~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~ 138 (451)
T PF00083_consen 78 ALIISALLMIIGSILIAFAPS-------------------YNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGF 138 (451)
T ss_pred ccccccccccccccccccccc-------------------cccccccccccccccccccccccccccccccccccccccc
Confidence 445566666666655554420 0257778888999999999988888889999999999999
Q ss_pred HHHHHHHHhhhhhhhhhHHHhhh
Q 013611 366 GLSIYMSVLGVGGFLSSILVSII 388 (439)
Q Consensus 366 ~~gl~~~~~~iG~~ig~~l~~~~ 388 (439)
..++......+|..++..+.-.+
T Consensus 139 ~~~~~~~~~~~G~~~~~~~~~~~ 161 (451)
T PF00083_consen 139 LSSLFQLFWALGILLASLIGYIV 161 (451)
T ss_pred ccccccccccccccccccccccc
Confidence 99999999999988877664433
No 262
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=87.15 E-value=0.69 Score=47.73 Aligned_cols=93 Identities=10% Similarity=-0.002 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHH-HHHHHHHHHHHHHhhhcccchhhhHH
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGI-SFGANSTILVVIYIQDNLNWALGFGI 109 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~-nlG~~ig~~l~g~l~~~~g~~~~F~i 109 (439)
+.|.....-++.|+..|.+..++.+.+.+..||+- |+++-++..... .+|--+|.++||.+.+.++=+..|.+
T Consensus 458 n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~ 531 (618)
T KOG3762|consen 458 NPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRI 531 (618)
T ss_pred CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHH
Confidence 45566666789999999999999999999999987 777777766544 38888888999999999998999999
Q ss_pred HHHHHHHHHHHHHhcCccee
Q 013611 110 PCAFMVAALVLFLLGTKTYR 129 (439)
Q Consensus 110 ~~~~~~i~~~l~~~~~~~~~ 129 (439)
.++..++.+++++...+..+
T Consensus 532 ~giAcl~~l~~~~~iq~~l~ 551 (618)
T KOG3762|consen 532 FGIACLVTLALFISIQLLLK 551 (618)
T ss_pred HHHHHHHHHHHHHHhhhhhc
Confidence 99888888887766655443
No 263
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=83.44 E-value=10 Score=40.15 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=44.8
Q ss_pred HHHHHHHhhhhhHHHHHHhhccc-CCCCCccccchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHH
Q 013611 213 LVYAIVFAQYTTFFTKQGATMDR-TITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGM 291 (439)
Q Consensus 213 ~~~~~~~~q~~~~~~~~~~~~~~-~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~ 291 (439)
.+.|..+.+..+.+..+...+.. +.. ++.+-.+.....|.+.++++.+......++. |.+ + .+..++-
T Consensus 195 fFnW~yf~~~~g~l~a~t~~vyiq~~~-~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~-------p~g-s--p~t~i~~ 263 (571)
T KOG1237|consen 195 FFNWFYFSQNGGALLAQTVLVYIQDNV-GWKLGFGIPTVLNALAILIFLPGFPFYRYKK-------PRG-S--PKTRIGQ 263 (571)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhhhcc-cceeeccHHHHHHHHHHHHHHcCceeEEeeC-------CCC-C--chhHHHH
Confidence 44566666655555444432221 222 6667778888899999998876655543222 211 2 4566777
Q ss_pred HHHHHHHHHH
Q 013611 292 LLSSISMVVA 301 (439)
Q Consensus 292 ~l~~i~~~~~ 301 (439)
++.+.....-
T Consensus 264 Vlvaa~~k~~ 273 (571)
T KOG1237|consen 264 VLVAAAFKRK 273 (571)
T ss_pred HHHHHHHHHh
Confidence 7766665543
No 264
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=78.97 E-value=34 Score=31.20 Aligned_cols=62 Identities=13% Similarity=0.161 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCh-hhHHHHHHHHHH-HhhhhhhhhhHHHhhhh
Q 013611 328 SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPK-ELKSFGLSIYMS-VLGVGGFLSSILVSIIN 389 (439)
Q Consensus 328 ~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~-~~~g~~~gl~~~-~~~iG~~ig~~l~~~~~ 389 (439)
..+.++....+.|++.+...+.....+.+..|+ +.++...+.... ...+|..+++.+.+.+.
T Consensus 93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T COG0477 93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLL 156 (338)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666778999988888888899999998 788988888888 58888888886666664
No 265
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=75.68 E-value=96 Score=31.43 Aligned_cols=61 Identities=25% Similarity=0.243 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611 328 SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN 389 (439)
Q Consensus 328 ~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~ 389 (439)
+.+++-+..++.|++... -+..++++++.+|+++--++++......-+|..+|..++..+.
T Consensus 93 sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllv 153 (412)
T PF01770_consen 93 SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLV 153 (412)
T ss_pred cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566676777777766554 5667789999999999999999888888888888888888775
No 266
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=75.17 E-value=30 Score=32.44 Aligned_cols=63 Identities=6% Similarity=-0.012 Sum_probs=47.4
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD 99 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~ 99 (439)
.+.+.+++...+.+.|.+.+.........+.||+ + |+++.++.-....+++++-..+.-.+..
T Consensus 94 ~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------RG~vvgilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 94 LPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------RGTVVGILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred cchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------cCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence 4677788878888888777777766667789985 4 8999999999888887776655554444
No 267
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=74.46 E-value=79 Score=32.33 Aligned_cols=52 Identities=17% Similarity=0.076 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHH
Q 013611 328 SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSIL 384 (439)
Q Consensus 328 ~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l 384 (439)
..+..+...++.|++.++...+...++. ..|++ +++.++..+++++.++..+
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~----~~~a~~~G~g~aGv~~s~~ 156 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST----YSSAVMSGQGLAGVLTSLA 156 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH----HHHHHHhcchhHHHHHHHH
Confidence 4555666667788898888877766444 56655 4445555555656555443
No 268
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=73.76 E-value=11 Score=38.92 Aligned_cols=74 Identities=12% Similarity=0.029 Sum_probs=57.7
Q ss_pred HHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHH
Q 013611 38 SLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVA 116 (439)
Q Consensus 38 ~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~~~~~~i 116 (439)
..++.++..-.+.....+.+.+++|+.+ +|.++++-+....|+..++..++++.+.+.+||...-.+.-+.+++
T Consensus 272 ~vi~y~~~~nlve~~~k~~v~~~~p~~~-----~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 272 LVIAYGISINLVEVTWKSKLKAQYPSPN-----EYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344666667777777888899997543 2899999999999999988888889999999999877665544444
No 269
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=69.66 E-value=1e+02 Score=29.13 Aligned_cols=60 Identities=18% Similarity=0.290 Sum_probs=40.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH--HH---HhhhcccchhhhHHHHHHHHHHHHHHHhcCcceeee
Q 013611 72 KSSFFNWWYFGISFGANSTILV--VI---YIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFS 131 (439)
Q Consensus 72 r~~~f~~~y~~~nlG~~ig~~l--~g---~l~~~~g~~~~F~i~~~~~~i~~~l~~~~~~~~~~~ 131 (439)
|+....+.-++.|+|+++.-+. .+ -....-.|++++.+.++..++-++++.+..+++...
T Consensus 4 K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~ 68 (267)
T PF07672_consen 4 KSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIY 68 (267)
T ss_pred cceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 7778888888999998876533 22 111124599999999888877777765555555433
No 270
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=68.78 E-value=1.4e+02 Score=30.30 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=36.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhh
Q 013611 327 TSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLG 375 (439)
Q Consensus 327 ~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~ 375 (439)
.++|.....+++....-.+..+-...-+.+...++.-|...|++.+..-
T Consensus 338 ~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al 386 (412)
T PF01770_consen 338 GNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVAL 386 (412)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHH
Confidence 3688888899887776666655555667778888888888888877543
No 271
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=68.01 E-value=8.1 Score=38.90 Aligned_cols=64 Identities=9% Similarity=0.005 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDN 100 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~ 100 (439)
+.+..++..+..|+.+|+...|....+.+..++++ ||.+++.-.++-.+|-+++-+++-++...
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~le~~ 397 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPLEPW 397 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45566666778999999999999999999887766 99999999999999999888888777543
No 272
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=63.85 E-value=26 Score=36.36 Aligned_cols=77 Identities=9% Similarity=0.023 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHH
Q 013611 35 FIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFM 114 (439)
Q Consensus 35 ~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~~~~~ 114 (439)
+++..+..++..-.+...-.+.+.+++|+++ ++...++-+....++-..+-.++++.+.+..||...-.+.-+.+
T Consensus 285 Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~-----~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~ 359 (491)
T PF03219_consen 285 IALLVIAYGISINLVEVVWKSQLKQLYPDPN-----DYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVI 359 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHH
Confidence 3333444667777788888888889998754 28899999999999988888899999999999998776643333
Q ss_pred HH
Q 013611 115 VA 116 (439)
Q Consensus 115 ~i 116 (439)
++
T Consensus 360 li 361 (491)
T PF03219_consen 360 LI 361 (491)
T ss_pred HH
Confidence 43
No 273
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=63.32 E-value=18 Score=31.32 Aligned_cols=61 Identities=7% Similarity=-0.036 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYI 97 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l 97 (439)
+...++++=++.|+|.+........++.+..++++ |+|-++++....+.+.++|.++.-.+
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888899999999999999999988776655 88888888777778777776554433
No 274
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.41 E-value=74 Score=32.74 Aligned_cols=62 Identities=15% Similarity=0.215 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611 328 SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN 389 (439)
Q Consensus 328 ~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~ 389 (439)
+-+.......+.|+|-.+.+.+.-.+..+..+++.+.+..++.+.+...+..+|+.+.-.+.
T Consensus 101 N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~ 162 (461)
T KOG3098|consen 101 NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFIYF 162 (461)
T ss_pred chHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhheeee
Confidence 45667788899999999998888899999999999999999999999999998877665554
No 275
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=56.40 E-value=2.4e+02 Score=28.85 Aligned_cols=60 Identities=17% Similarity=0.104 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 013611 329 VWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSII 388 (439)
Q Consensus 329 ~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~ 388 (439)
-++.++..++.|+..+........++-+.+++++|-.+-.+..+...+|-.+|..+.-.+
T Consensus 372 d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~ 431 (437)
T TIGR00939 372 DAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF 431 (437)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666788899999888666666788889999999999999998888888887664433
No 276
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=56.05 E-value=2.3e+02 Score=28.62 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCccc
Q 013611 328 SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNR 407 (439)
Q Consensus 328 ~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~ 407 (439)
..+..+...++.+++.+...-+.+- ..+..|++...-. ...+++++.+...+--......+++ +
T Consensus 116 ff~vt~~~vv~~~~a~a~~qgs~~G-~a~~~P~~ytqav----m~G~a~aG~l~Sl~~i~tka~~~~~----------~- 179 (406)
T KOG1479|consen 116 FFLVTLIIVVLLNLANAVVQGSLYG-LAGLFPSEYTQAV----MSGQALAGTLTSLLRILTKAAFSDS----------R- 179 (406)
T ss_pred hHHHHHHHHHHHhhhhhhhccchhh-hhhcCCHHHHHHH----HhcchhHhHHHHHHHHHHHHhcCCC----------C-
Confidence 3455566667788888888777765 4445565533322 2233444444333222222222111 1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Q 013611 408 AHLDYFYWLLAALSAGGLLAFLYF 431 (439)
Q Consensus 408 ~~~~~~f~~~~~l~~l~~~i~~~~ 431 (439)
.+-..+|.+..++.+++.+.|..+
T Consensus 180 ~sA~~yF~~s~~~~llC~i~y~~l 203 (406)
T KOG1479|consen 180 TSALIYFITSTVILLLCFVLYLVL 203 (406)
T ss_pred ceeehhHHHHHHHHHHHHHHHHHh
Confidence 222345666677778888887733
No 277
>PRK07331 cobalt transport protein CbiM; Provisional
Probab=53.75 E-value=1.4e+02 Score=29.10 Aligned_cols=107 Identities=16% Similarity=0.155 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHH-----HhhhCC-CCCCCC
Q 013611 250 LFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLET-----AKEYGL-IDKPNV 323 (439)
Q Consensus 250 ~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~ 323 (439)
..|.+.+.+..++..+.+++..+|+.. +.......+++...++..+.+.......-- ..+.|. ...+ .
T Consensus 107 GaN~l~ma~~~~~v~y~iyr~~~~~~~-----~~~~~~~~~f~gg~l~i~~~al~~al~l~~~~~~~~~~~g~~~~~~-~ 180 (322)
T PRK07331 107 GANCFNMAFIMPFVGYYIYKFIKKWTK-----SKKGEYIGAFIGGYIGINVAALFAAIEFGLQPLLFKDASGLPLYSP-Y 180 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcccccc-c
Confidence 357776666667777877776665321 222334444444555544443332211000 000110 0000 0
Q ss_pred CCcchHHHHHHHHHHH-HHHHHHHhhhhHHHHHhhcChhh
Q 013611 324 TIPTSVWWLIPQYLLC-GIADVFTIVGLQEFFYDQIPKEL 362 (439)
Q Consensus 324 ~~~~~~~~~i~~~~l~-gige~l~~~~~~~~~~~~aP~~~ 362 (439)
+.......+.+.++.. ++.|+++......++.+.-|+-.
T Consensus 181 ~~~~~~~~m~~~hl~i~gi~Eg~iT~~v~~~l~~~~p~ll 220 (322)
T PRK07331 181 PLSVTIPAMLLPHLLVAGILEGIFTALVFSFIKRVSPGIL 220 (322)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHh
Confidence 0012233466777776 99999998888889988877553
No 278
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=53.68 E-value=2.6e+02 Score=28.53 Aligned_cols=160 Identities=12% Similarity=0.078 Sum_probs=79.0
Q ss_pred cccchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 013611 242 KIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKP 321 (439)
Q Consensus 242 ~~~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (439)
.+|++.+.....+..+++.|..+.++|+.-|.+. .+..+..=-+-.++++.+........ . ..
T Consensus 37 Ll~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~-------~~~~l~~Qn~sv~~s~~~~~~l~~~~-------~---~~ 99 (432)
T PF06963_consen 37 LLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKV-------IRTSLVVQNLSVAASCALFLLLLSYP-------S---SS 99 (432)
T ss_pred cHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhh-------HHHHHHHHHHHHHHHHHHHHHHHhCC-------c---cc
Confidence 4667788888899999999999998875443221 11122222222333333333222100 0 00
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhhhhH-----HHHHhhcChhhHHHHHHHHHHHh---hhhhhhhhHHHhhhhcccc
Q 013611 322 NVTIPTSVWWLIPQYLLCGIADVFTIVGLQ-----EFFYDQIPKELKSFGLSIYMSVL---GVGGFLSSILVSIINEATS 393 (439)
Q Consensus 322 ~~~~~~~~~~~i~~~~l~gige~l~~~~~~-----~~~~~~aP~~~~g~~~gl~~~~~---~iG~~ig~~l~~~~~~~~~ 393 (439)
.......+......++.+.-|-+...... +++-..+ ++.++.-..++..++ -+-..++|.++|.+...
T Consensus 100 -~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~-~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~-- 175 (432)
T PF06963_consen 100 -SQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIA-GGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTF-- 175 (432)
T ss_pred -cccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhc-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Confidence 00011112222223344444444433332 2222334 333444444444444 45788999999988531
Q ss_pred CCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHH-HHHHhccCc
Q 013611 394 RDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLA-FLYFAKSYN 436 (439)
Q Consensus 394 ~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l~~~i-~~~~~~~~~ 436 (439)
.+....-.+.++..+++.++ |+++.+-|+
T Consensus 176 --------------~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~ 205 (432)
T PF06963_consen 176 --------------ASPVIAAIFIAGWNLASVFVEYFLLARVYN 205 (432)
T ss_pred --------------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334455566677777665 555555443
No 279
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=52.44 E-value=68 Score=25.43 Aligned_cols=38 Identities=16% Similarity=0.282 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc----chhhhHHHHHH
Q 013611 76 FNWWYFGISFGANSTILVVIYIQDNLN----WALGFGIPCAF 113 (439)
Q Consensus 76 f~~~y~~~nlG~~ig~~l~g~l~~~~g----~~~~F~i~~~~ 113 (439)
++...+.+.+..++|..+|-||-+.++ |..+|++.++.
T Consensus 45 ~g~IG~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~ 86 (100)
T TIGR02230 45 FGLIGWSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVV 86 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 455555566667777777888876654 44445554443
No 280
>PF01891 CbiM: Cobalt uptake substrate-specific transmembrane region; InterPro: IPR002751 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the integral membrane protein CbiM, which is involved in cobalamin synthesis, although its exact function in unknown.; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane
Probab=50.83 E-value=1.9e+02 Score=26.04 Aligned_cols=99 Identities=17% Similarity=0.082 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchH
Q 013611 250 LFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSV 329 (439)
Q Consensus 250 ~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (439)
.+|.+.+.+..++..+...+..+|+ .+......+++...++..................+ + .+.....
T Consensus 106 G~N~l~m~~~~~~~~~~~~~~l~~~-------~~~~~~~~~F~ag~l~~~~~~~~~~~~l~l~~~~~---~--~~~~~~~ 173 (205)
T PF01891_consen 106 GANALNMGVPPVLVSYLLFRLLRRK-------FPRNIFVAGFLAGFLSVLLAALAVSLVLGLSGTAG---D--YPWMALV 173 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---c--ccHHHHH
Confidence 4677777777777788777766553 12223344444333443333322221110010000 0 0011234
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHhhcCh
Q 013611 330 WWLIPQYLLCGIADVFTIVGLQEFFYDQIPK 360 (439)
Q Consensus 330 ~~~i~~~~l~gige~l~~~~~~~~~~~~aP~ 360 (439)
....+.+.+.++.|++.......+..+.-|+
T Consensus 174 ~~~~~~~~~l~~~Eg~ltg~~v~~l~~~rP~ 204 (205)
T PF01891_consen 174 QAYLPSHLLLAFPEGFLTGMVVTFLVVYRPE 204 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4566778888999999877776666666553
No 281
>PRK03612 spermidine synthase; Provisional
Probab=49.14 E-value=59 Score=34.08 Aligned_cols=78 Identities=17% Similarity=0.046 Sum_probs=49.5
Q ss_pred HHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh-cccchhhhHHHH-HHH
Q 013611 37 FSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD-NLNWALGFGIPC-AFM 114 (439)
Q Consensus 37 ~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~-~~g~~~~F~i~~-~~~ 114 (439)
...++.++-.|+..|....+..+... ++ -++..+..|....+|+++|.++.+++.- .+|-+-..++.+ +-.
T Consensus 115 ~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~ 187 (521)
T PRK03612 115 VLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNL 187 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 33455677777777777776654322 11 3467888999999999999999998654 566554444433 333
Q ss_pred HHHHHHH
Q 013611 115 VAALVLF 121 (439)
Q Consensus 115 ~i~~~l~ 121 (439)
+++++.+
T Consensus 188 ~~a~~~~ 194 (521)
T PRK03612 188 LAALVFL 194 (521)
T ss_pred HHHHHHH
Confidence 3443333
No 282
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=44.83 E-value=3.8e+02 Score=27.87 Aligned_cols=39 Identities=10% Similarity=0.209 Sum_probs=31.0
Q ss_pred hhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 013611 55 AFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD 99 (439)
Q Consensus 55 a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~ 99 (439)
.+..+++..+| -.|+++.++.+.|++.+++..+..++..
T Consensus 171 ~faNeitt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 171 QFANEITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHhhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555544 5689999999999999999999998876
No 283
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=43.71 E-value=32 Score=32.82 Aligned_cols=87 Identities=14% Similarity=0.112 Sum_probs=61.2
Q ss_pred CCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhh
Q 013611 27 PHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALG 106 (439)
Q Consensus 27 ~~~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~ 106 (439)
|...+...-.++..++-.+.|.+.|..+-+=.+..|+++ |+..++||....|+=.-++...----....+-|-.
T Consensus 339 P~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~m 412 (454)
T KOG4332|consen 339 PSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNM 412 (454)
T ss_pred CCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchh
Confidence 444555555777788889999999999999888888877 99999999998887554433221000112355677
Q ss_pred hHHHHHHHHHHHH
Q 013611 107 FGIPCAFMVAALV 119 (439)
Q Consensus 107 F~i~~~~~~i~~~ 119 (439)
|.+|-+.+.++.+
T Consensus 413 f~icS~~~~~a~i 425 (454)
T KOG4332|consen 413 FGICSAFLFVASI 425 (454)
T ss_pred hhhhHHHHHHHHH
Confidence 8888877776654
No 284
>PRK11909 cobalt transport protein CbiM; Provisional
Probab=42.84 E-value=2.3e+02 Score=26.15 Aligned_cols=35 Identities=11% Similarity=0.058 Sum_probs=27.2
Q ss_pred HHHHHHHHHHH-HHHHHHHhhhhHHHHHhhcChhhH
Q 013611 329 VWWLIPQYLLC-GIADVFTIVGLQEFFYDQIPKELK 363 (439)
Q Consensus 329 ~~~~i~~~~l~-gige~l~~~~~~~~~~~~aP~~~~ 363 (439)
...+.+.++.. ++.|+++......++.+.-|++.-
T Consensus 183 ~~~~~~~h~~i~~i~Eg~iT~~~~~~l~~~~~~~~l 218 (230)
T PRK11909 183 IPAMLFAHLTVAGIVEAIVTGLVVYYLQKADEENLL 218 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHh
Confidence 44567778887 999999988888888888666543
No 285
>TIGR00123 cbiM cobalamin biosynthesis protein CbiM. In Methanobacterium thermoautotrophicum, Archaeoglobus fulgidus, and Methanococcus jannaschii, a second homolog of cbiM is also found. These cbiM-related proteins appear to represent a distinct but less well-conserved orthologous group. Still more distant homologs include sll0383 from Synechocystis sp. and HI1621 from Haemophilus influenzae; the latter protein, from a species that does not synthesize cobalamin, is the most divergent member of the group. The functions of and relationships among the set of proteins homologous to cbiM have not been determined.
Probab=42.52 E-value=2.7e+02 Score=25.41 Aligned_cols=99 Identities=14% Similarity=0.057 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcch-
Q 013611 250 LFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTS- 328 (439)
Q Consensus 250 ~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 328 (439)
..|.+.+.+..++..+.+++..+|+. .| ....-+..|++-..++....+..-.. .++ .+......+
T Consensus 109 G~N~l~m~~~~~~~~~~~~~~~~~~~-l~---~~v~~f~~gf~~~~l~~~~~~~~l~l------~~~---~~~~~~~~~~ 175 (214)
T TIGR00123 109 GANGFSMGVIGPFVGWIVYKLACRAG-LR---RDVAVFLAAMLGDLATYVVTSVQLAL------AFP---IPHAGFTGSV 175 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-cc---hHHHHHHHHHHHHHHHHHHHHHHHHH------hCC---CcccchHHHH
Confidence 46888888888888998888776641 11 11222223333333332222221000 010 000000001
Q ss_pred ---HHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChh
Q 013611 329 ---VWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE 361 (439)
Q Consensus 329 ---~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~ 361 (439)
.....+.++..++.|+++......++.+.-|+-
T Consensus 176 ~~~~~~~~~~h~~~~i~Eg~iT~~~~~~l~~~~p~~ 211 (214)
T TIGR00123 176 VKFMGIFAYTQVPLAIAEGLLTVMIYDYITKLRPDT 211 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHh
Confidence 233446667889999999888888999888764
No 286
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=39.34 E-value=96 Score=23.19 Aligned_cols=53 Identities=19% Similarity=0.142 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHhcCccee
Q 013611 74 SFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYR 129 (439)
Q Consensus 74 ~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~~~~~~i~~~l~~~~~~~~~ 129 (439)
++-.++...+-+++++|.+ .||+.++ .+..+.+.++..++++++.+-.++.|.
T Consensus 8 ~ae~l~~~il~~~~iisfi-~Gy~~q~--~~~~~~~~~~g~~~~~lv~vP~Wp~y~ 60 (76)
T PF06645_consen 8 LAEKLMQYILIISAIISFI-VGYITQS--FSYTFYIYGAGVVLTLLVVVPPWPFYN 60 (76)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHhheeCCcHhhc
Confidence 5556666677777777765 4555553 567777777777777777666666554
No 287
>PRK08319 cobalt transport protein CbiM; Validated
Probab=36.58 E-value=3.3e+02 Score=24.95 Aligned_cols=31 Identities=16% Similarity=0.154 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhcChhh
Q 013611 332 LIPQYLLCGIADVFTIVGLQEFFYDQIPKEL 362 (439)
Q Consensus 332 ~i~~~~l~gige~l~~~~~~~~~~~~aP~~~ 362 (439)
+...++..+++|++.......+..+.-|+-.
T Consensus 182 ~~~~~l~l~~~Eg~itg~~v~~l~~~rP~~l 212 (224)
T PRK08319 182 FAVTQIPLAIAEGLLTVLIFNYLTKYRPDLL 212 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
Confidence 3566677899999998777777777777654
No 288
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=31.81 E-value=83 Score=32.74 Aligned_cols=60 Identities=15% Similarity=0.203 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhc
Q 013611 331 WLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE 390 (439)
Q Consensus 331 ~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~ 390 (439)
.++.++++..+..-..+++..+|-.+.+.+..=|++|.+.|...|+|+.--..++-.+.+
T Consensus 407 lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD 466 (544)
T PF13000_consen 407 LVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVD 466 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhh
Confidence 355677777777777799999999999999999999999999999999877666655543
No 289
>KOG4142 consensus Phospholipid methyltransferase [Lipid transport and metabolism]
Probab=31.55 E-value=2.2e+02 Score=24.68 Aligned_cols=89 Identities=16% Similarity=0.185 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHH----HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcch
Q 013611 253 GIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAG----MLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTS 328 (439)
Q Consensus 253 ~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG----~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (439)
+++.+.+.|++-.+..++-.+. ..+.|+.-| .-..+...+++++...+.+ ++....+|+-..-++
T Consensus 26 a~v~i~fNPl~WNivAR~Ey~~-------~~Ltk~~gg~~kaCYmLaatIf~lgivRd~~y----~~Al~~QPt~~~~~~ 94 (208)
T KOG4142|consen 26 AVVTITFNPLYWNIVARWEYKT-------RKLTKAFGGPYKACYMLAATIFLLGIVRDHCY----TQALLSQPTMESLDT 94 (208)
T ss_pred hhhhhhhchHHHHHHHHHHhhH-------HHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH----HHHHHhCCcchhccC
Confidence 4566777888777776655432 223333222 2223334444555443333 233333443222345
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHH
Q 013611 329 VWWLIPQYLLCGIADVFTIVGLQE 352 (439)
Q Consensus 329 ~~~~i~~~~l~gige~l~~~~~~~ 352 (439)
..|.-+...+.|+|..++....+.
T Consensus 95 p~~~~lg~alfglG~VLVLSSmyk 118 (208)
T KOG4142|consen 95 PAAYSLGLALFGLGVVLVLSSMYK 118 (208)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHH
Confidence 667778888999999888666643
No 290
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=30.67 E-value=23 Score=36.23 Aligned_cols=65 Identities=17% Similarity=0.226 Sum_probs=55.0
Q ss_pred CCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 013611 28 HHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYI 97 (439)
Q Consensus 28 ~~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l 97 (439)
.+.....+.++..++=+.+-..+....++.+|...+++. +.++.+++.....+|..+|..+++|.
T Consensus 138 ~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~-----~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 138 KPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAK-----KTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred chHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhh-----hhccchhHHHHHHhcceeeeeccccc
Confidence 345777888888899999999999999999999987651 33399999999999999999999865
No 291
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=28.62 E-value=6.5e+02 Score=25.72 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=15.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q 013611 287 IGAGMLLSSISMVVAALVEIK 307 (439)
Q Consensus 287 i~iG~~l~~i~~~~~~~~~~~ 307 (439)
+-.|++..++.+....++|..
T Consensus 298 ~KYgiLFI~LTF~~fflfE~~ 318 (430)
T PF06123_consen 298 VKYGILFIGLTFLAFFLFELL 318 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888888864
No 292
>PRK03612 spermidine synthase; Provisional
Probab=28.08 E-value=7.2e+02 Score=26.04 Aligned_cols=51 Identities=12% Similarity=0.166 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611 338 LCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN 389 (439)
Q Consensus 338 l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~ 389 (439)
+.++-.+...|-...... ....+..|...|-.+....+|+.+|..+.+++.
T Consensus 119 ~~~~l~G~~~Pl~~~~~~-~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vL 169 (521)
T PRK03612 119 LIGLLIGMEIPLLMRILQ-RIRDQHLGHNVATVLAADYLGALVGGLAFPFLL 169 (521)
T ss_pred HHHHHHHHHHHHHHHHHH-hccccchhhhhhhhHhHHhHHHHHHHHHHHHHH
Confidence 344444445554433332 222223456677788888899999998888775
No 293
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=27.07 E-value=21 Score=34.57 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=3.7
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 013611 29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVV 94 (439)
Q Consensus 29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~ 94 (439)
-.+.+.+++..+++|+..|-..........+..+++| |+.+-.......++|-.+|..++
T Consensus 245 ~~~d~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e------~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 245 FNSDAWFIILMLLFGFTNGYLSTLAMMYAPKSVSPEE------RELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp ----------------------HHHH----------------------------------------
T ss_pred ccchHHHHHHHHHHHHccchhhhceeeeCCCcCCHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888999999999999999998888888666 88998998888888888777654
No 294
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=26.60 E-value=2.3e+02 Score=19.85 Aligned_cols=42 Identities=10% Similarity=0.090 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHH
Q 013611 77 NWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAAL 118 (439)
Q Consensus 77 ~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~~~~~~i~~ 118 (439)
--+-|+.-+|-.+|.+.+..-...+++...-.++.+..++..
T Consensus 5 vt~fWs~il~~vvgyI~ssL~~~~~n~~~~~Ii~vi~~i~~~ 46 (57)
T PF11151_consen 5 VTFFWSFILGEVVGYIGSSLTGVTYNFTTAAIIAVIFGIIVA 46 (57)
T ss_pred ehhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Confidence 345688889999999888887777776666555554444333
No 295
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.78 E-value=2.3e+02 Score=22.10 Aligned_cols=53 Identities=19% Similarity=0.071 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHhcCccee
Q 013611 74 SFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYR 129 (439)
Q Consensus 74 ~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~~~~~~i~~~l~~~~~~~~~ 129 (439)
++=-++...+.+|+++|.++|-+- +.++|.. .+.++...++.++.+--++.|+
T Consensus 23 kaEr~~q~ilti~aiVg~i~Gf~~-Qqls~tv--y~vg~~~v~t~li~LPpwP~y~ 75 (101)
T KOG4112|consen 23 KAERFQQLILTIGAIVGFIYGFAQ-QQLSVTV--YIVGAGFVFTLLITLPPWPWYR 75 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHhcCCCchhhh
Confidence 444566777889999998776655 4466543 3333344445555444444444
No 296
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=25.59 E-value=1.9e+02 Score=26.58 Aligned_cols=52 Identities=10% Similarity=0.166 Sum_probs=32.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHhcCc
Q 013611 72 KSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTK 126 (439)
Q Consensus 72 r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~~~~~~i~~~l~~~~~~ 126 (439)
.+....|+..+.-++.+...++.|++.. ..|.+.+.++...+-...+++.++
T Consensus 23 ~dp~l~~~ml~a~l~~~~v~v~ig~l~~---~~~~~~i~gi~~g~l~am~vl~rr 74 (224)
T PF13829_consen 23 EDPKLPWLMLGAFLGPIAVFVLIGLLFG---SWWYWLIIGILLGLLAAMIVLSRR 74 (224)
T ss_pred HCcchHHHHHHHHHHHHHHHHHHHHHHc---cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788877777777777777777654 445555555544444444555554
No 297
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=24.35 E-value=7.3e+02 Score=24.90 Aligned_cols=100 Identities=16% Similarity=0.177 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCccc
Q 013611 328 SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNR 407 (439)
Q Consensus 328 ~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~ 407 (439)
.+|+....|++......+..+-....+.+...++.-|...|++.+..-+ +-..+.-.+.+. .++.=+...
T Consensus 325 ~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~---lQsilT~iVvd~-------~g~~L~ir~ 394 (433)
T KOG3810|consen 325 HIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALI---LQSILTLIVVDD-------RGLGLDIRT 394 (433)
T ss_pred ceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHH---HHHhheEEEEcc-------cccCCCcce
Confidence 5888999999988888887555556777888888888888888775433 222232223221 111101110
Q ss_pred --chhhHHHHHHHHHHHHHHHHHHHHhccCcc
Q 013611 408 --AHLDYFYWLLAALSAGGLLAFLYFAKSYNR 437 (439)
Q Consensus 408 --~~~~~~f~~~~~l~~l~~~i~~~~~~~~~~ 437 (439)
--+..+|.++|++.+++..+.....+|-|+
T Consensus 395 Q~~~Y~~Yf~v~~~i~~~~~~~~~~~~~~~~~ 426 (433)
T KOG3810|consen 395 QFVVYSSYFIVLGVIFLIGFGIEYLMCRRNKV 426 (433)
T ss_pred eEEEEeehHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 013446888899999997776666665544
No 298
>PF12832 MFS_1_like: MFS_1 like family
Probab=24.24 E-value=2.6e+02 Score=20.70 Aligned_cols=29 Identities=7% Similarity=0.023 Sum_probs=21.5
Q ss_pred cchhhhhhHHHHHHHHHHhhhhhhhhhcc
Q 013611 244 PAASLQLFIGIGIITFIPIYDCIFVPITR 272 (439)
Q Consensus 244 ~~~~~~~in~~~iii~~pl~~~~~~~~~~ 272 (439)
..+.+..+.++.-++..|+.+.+.++..+
T Consensus 36 ~iGil~~i~~~~~~~~~pl~g~laDk~~~ 64 (77)
T PF12832_consen 36 QIGILSAIRPLIRFLAPPLWGFLADKFGK 64 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 34667788888888888888887765443
No 299
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=22.66 E-value=3.5e+02 Score=28.15 Aligned_cols=81 Identities=11% Similarity=0.077 Sum_probs=59.5
Q ss_pred HHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHH-HHHHHHHHHHhhhcccchhhhHHHHHHHH
Q 013611 37 FSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFG-ANSTILVVIYIQDNLNWALGFGIPCAFMV 115 (439)
Q Consensus 37 ~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG-~~ig~~l~g~l~~~~g~~~~F~i~~~~~~ 115 (439)
.-.+..|++.-.+...-.+-+...+|..++ ++.+++-+..-.++- ..+....++-+.+..||-.+=.+.-+.++
T Consensus 289 l~vl~Y~v~inLvE~~wKs~ik~~~~~~~~-----~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitPiv~l 363 (509)
T COG3202 289 LLVLAYGVSINLVEGVWKSGIKELYPTTNE-----YTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGALITPLVML 363 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhcCChhH-----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHH
Confidence 333446666677777778888888887542 777888777766666 66777888889999999988887777777
Q ss_pred HHHHHHH
Q 013611 116 AALVLFL 122 (439)
Q Consensus 116 i~~~l~~ 122 (439)
++.++++
T Consensus 364 itg~lFF 370 (509)
T COG3202 364 ITGVLFF 370 (509)
T ss_pred HHHHHHH
Confidence 7766554
No 300
>PRK11715 inner membrane protein; Provisional
Probab=22.21 E-value=8.6e+02 Score=24.91 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=17.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH
Q 013611 286 RIGAGMLLSSISMVVAALVEIK 307 (439)
Q Consensus 286 ~i~iG~~l~~i~~~~~~~~~~~ 307 (439)
-+-.|.+..++.+....++|..
T Consensus 303 A~KYgiLFI~LTF~~fFlfE~~ 324 (436)
T PRK11715 303 AVKYAILFIALTFAAFFLFELL 324 (436)
T ss_pred HHhHHHHHHHHHHHHHHHHHHh
Confidence 3457888888888888888874
No 301
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=21.54 E-value=2.8e+02 Score=24.93 Aligned_cols=88 Identities=23% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh----cccchhhhHHHH
Q 013611 36 IFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD----NLNWALGFGIPC 111 (439)
Q Consensus 36 ~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~----~~g~~~~F~i~~ 111 (439)
+..+++.++..|.......-.+... +++ ..+---|.++.+.++.++.-++.-.+.. ..+.++.-++..
T Consensus 113 i~tli~~~i~~G~~~~~~~~~i~~~--~~~------~~r~~~~k~~~~~~~~~~~w~~~~~~~~~lp~~inp~l~~~~~i 184 (206)
T PF06570_consen 113 IITLILVSIVGGLVFYFIFKYIYPY--KKK------KKRPSWWKYILISVLAMVLWIVIFVLTSFLPPVINPVLPPWVYI 184 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc--ccc------ccccHHHHHHHHHHHHHHHHHHHHHHHHHccccCCcCCCHHHHH
Q ss_pred HHHHHHHHHHHhcCcceeee
Q 013611 112 AFMVAALVLFLLGTKTYRFS 131 (439)
Q Consensus 112 ~~~~i~~~l~~~~~~~~~~~ 131 (439)
+...++.++.++.+|++..+
T Consensus 185 iig~i~~~~~~~lkkk~~i~ 204 (206)
T PF06570_consen 185 IIGVIAFALRFYLKKKYNIT 204 (206)
T ss_pred HHHHHHHHHHHHHHHHhCCC
No 302
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=21.07 E-value=3.6e+02 Score=20.60 Aligned_cols=38 Identities=8% Similarity=-0.102 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHH
Q 013611 75 FFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCA 112 (439)
Q Consensus 75 ~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~~~ 112 (439)
--++....+.+|.++|-++...+.+....+..+.+..+
T Consensus 28 ~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~ 65 (85)
T PF06779_consen 28 QAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLL 65 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 34666677778999998888888776555555554443
Done!