Query 013611
Match_columns 439
No_of_seqs 125 out of 1364
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 13:49:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013611.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013611hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 99.9 3.7E-21 1.3E-25 196.6 23.4 352 30-437 106-477 (491)
2 2xut_A Proton/peptide symporte 99.9 5.1E-22 1.8E-26 204.8 14.3 363 31-438 108-509 (524)
3 1pw4_A Glycerol-3-phosphate tr 99.8 6.3E-17 2.2E-21 162.8 22.8 313 30-433 117-435 (451)
4 3o7q_A L-fucose-proton symport 99.7 4E-15 1.4E-19 149.1 23.8 265 29-391 114-407 (438)
5 2gfp_A EMRD, multidrug resista 99.5 4E-15 1.4E-19 146.3 7.4 264 30-389 86-350 (375)
6 4gc0_A D-xylose-proton symport 99.3 8.5E-11 2.9E-15 119.5 21.5 84 29-118 123-214 (491)
7 2cfq_A Lactose permease; trans 99.3 6.3E-12 2.1E-16 125.8 11.1 140 246-434 262-402 (417)
8 1pw4_A Glycerol-3-phosphate tr 98.7 1E-06 3.5E-11 87.9 19.7 145 245-433 64-208 (451)
9 3o7q_A L-fucose-proton symport 98.6 1.3E-06 4.5E-11 86.8 18.3 115 245-389 63-177 (438)
10 4aps_A DI-OR tripeptide H+ sym 98.6 3.8E-06 1.3E-10 85.0 19.9 143 244-435 55-200 (491)
11 2gfp_A EMRD, multidrug resista 98.4 2.5E-06 8.4E-11 83.1 13.4 133 245-426 37-169 (375)
12 2xut_A Proton/peptide symporte 98.4 5.6E-06 1.9E-10 84.5 16.5 142 245-433 56-200 (524)
13 4gc0_A D-xylose-proton symport 97.6 0.0014 4.8E-08 65.8 16.8 125 247-389 59-186 (491)
14 2cfq_A Lactose permease; trans 96.9 0.00028 9.7E-09 69.8 2.3 86 32-123 312-398 (417)
15 1p1p_A AA-conotoxin PIVA; neur 21.7 36 0.0012 18.3 1.1 15 12-26 10-24 (26)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.88 E-value=3.7e-21 Score=196.62 Aligned_cols=352 Identities=17% Similarity=0.235 Sum_probs=228.4
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI 109 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i 109 (439)
.+.+.++++|++.|+|.|...|+..++++|++|+++.+ |++++++++.+.++|..+||.+++++.+..||++.|++
T Consensus 106 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~ 181 (491)
T 4aps_A 106 FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSL 181 (491)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 45678999999999999999999999999999987633 77899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcceeeecCCCCCCc--chhHHHH-------------HHH-HhHhhccccCcchhhcccccchhh
Q 013611 110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNP--FARIGRV-------------FVV-AIKTRKATLASEDEAQSSQQFKFL 173 (439)
Q Consensus 110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~-------------l~~-a~~~~~~~~~~~~~~~~~~~~~~~ 173 (439)
.++..+++.+++++..++...++++.++++ ..+..+. .+. ....... +..+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~-----------~~~~~~ 250 (491)
T 4aps_A 182 AAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWN-----------SLPAYI 250 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSC-----------CTTHHH
T ss_pred HHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCc-----------ccccch
Confidence 888777777665544332221111100111 1111110 000 0000000 000000
Q ss_pred hhhh---hcCCC-CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhh
Q 013611 174 NKAL---LATPD-VSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQ 249 (439)
Q Consensus 174 ~~~~---~~~~~-~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~ 249 (439)
.... ..... .....+... .....++++..+...+++....++..+.+..+.++.+..+.- +. + ..+.+.+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~-~~~~~~~~ 325 (491)
T 4aps_A 251 NLLTIVAIAIPVFYFAWMISSV-KVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERV-DS--S-WFPVSWFQ 325 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSC-CC--S-SSCSGGGT
T ss_pred hhhhHHHHHHHHHHHHHHhhcc-cccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHh-cc--C-ccCHHHHh
Confidence 0000 00000 000000000 011233444555666777778888888888777665543211 11 1 25567888
Q ss_pred hhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchH
Q 013611 250 LFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSV 329 (439)
Q Consensus 250 ~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (439)
.++++..++..++.+++.+++.+|. .....++.+|.++.++++.++...... .+ .+.+.+.
T Consensus 326 ~~~~~~~~~~~~~~~~l~~r~~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~------~~~~~~~ 386 (491)
T 4aps_A 326 SLNPLFIMLYTPFFAWLWTAWKKNQ------PSSPTKFAVGLMFAGLSFLLMAIPGAL-------YG------TSGKVSP 386 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTC---------CHHHHHHHHHHHHHHHTTTHHHHHH-------CC------CCTTCCT
T ss_pred ccchHHHHHHHHHHHHHHHHHhccC------CCchHHHHHHHHHHHHHHHHHHHHHHh-------cC------CCCCccH
Confidence 8999999999999999877665543 345677889999999988877765421 00 0012467
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCCcccch
Q 013611 330 WWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAH 409 (439)
Q Consensus 330 ~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (439)
+++++.+++.++|++...+..++++.+..|++.||+++|+++...++|+.+++.+.+.+.+. +
T Consensus 387 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-----------------~ 449 (491)
T 4aps_A 387 LWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-----------------S 449 (491)
T ss_dssp HHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-----------------S
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------c
Confidence 78888999999999999888889999999999999999999999999999999998877531 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCcc
Q 013611 410 LDYFYWLLAALSAGGLLAFLYFAKSYNR 437 (439)
Q Consensus 410 ~~~~f~~~~~l~~l~~~i~~~~~~~~~~ 437 (439)
+...|...+++++++.++.+...++.++
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 450 EVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp TTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888887777665544
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.87 E-value=5.1e-22 Score=204.83 Aligned_cols=363 Identities=24% Similarity=0.378 Sum_probs=219.8
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhh---hhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhh
Q 013611 31 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKS---SFFNWWYFGISFGANSTILVVIYIQDNLNWALGF 107 (439)
Q Consensus 31 ~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~---~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F 107 (439)
+.+.++++|++.|+|.|...|+..+++.|++|+++ |+ ..+++++.+.++|.++||.+++++.+..+|++.|
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f 181 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN------KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAF 181 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT------TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHH
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 67789999999999999999999999999999877 64 4567799999999999999999999989999999
Q ss_pred HHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCc-----------------ch--------
Q 013611 108 GIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLAS-----------------ED-------- 162 (439)
Q Consensus 108 ~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~-----------------~~-------- 162 (439)
++.++..+++.+++++.+++.+.++|++ ++..+..+.+..+.+......+. ..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (524)
T 2xut_A 182 GIPGVLMFVATVFFWLGRKRYIHMPPEP--KDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVA 259 (524)
T ss_dssp HHHHHHHHHHHHHHHSSSSSCCCCC----------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSH
T ss_pred HHHHHHHHHHHHHHHHhcccccccCCCC--ccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhh
Confidence 9998887777766655444333222221 11111111111111110000000 00
Q ss_pred --------hhcccccchh--hhhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhh
Q 013611 163 --------EAQSSQQFKF--LNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGAT 232 (439)
Q Consensus 163 --------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ 232 (439)
..+......| .+..+ ..++..+.+++++..+...++.....++..+.+..+.+..+..+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (524)
T 2xut_A 260 GLCCAMVLVMGFVGAGASLQLERAR-----------KSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQAND 328 (524)
T ss_dssp HHHHHHHHHHHHHHTGGGTHHHHSC-----------CSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHH
T ss_pred hhhhhhhhhhcccccchhhHHhhhh-----------ccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHh
Confidence 0000000011 11100 00001111233444455556666666777777777777666544
Q ss_pred cccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013611 233 MDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETA 312 (439)
Q Consensus 233 ~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~ 312 (439)
++.. .+ .+.+.+..++++..++..|+.+++..|..+|+..+ .+..+++.+|+++.+++++++...+...
T Consensus 329 ~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~---- 397 (524)
T 2xut_A 329 MVKP---QW-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLMM---- 397 (524)
T ss_dssp SCCC---SS-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTTT----
T ss_pred cCCC---ee-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 4322 11 35677788888888888899988876666654322 3566778888888888877665442100
Q ss_pred hhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccc
Q 013611 313 KEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEAT 392 (439)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~ 392 (439)
+ .....+.+++++.+++.++|++...+..++++.+.+|+++||+++|+++...++|+.+|+.+.+.+.+..
T Consensus 398 ------~---~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~ 468 (524)
T 2xut_A 398 ------D---GGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPT 468 (524)
T ss_dssp ------T---TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCH
T ss_pred ------c---CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 0 0012467788889999999999999999999999999999999999999999999999999999875321
Q ss_pred cCCCCCCCCCC-CcccchhhHHHHHHHHHHHHHHHHHHHHhccCccC
Q 013611 393 SRDGGDSWFAD-NLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNRE 438 (439)
Q Consensus 393 ~~~~~~~~~~~-~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~~~~ 438 (439)
. .+|.++ +.+. ..+.|++.+++++++.+++++..++++++
T Consensus 469 ~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (524)
T 2xut_A 469 V----TEQIVQTGMSV--TAFQMFFFAGFAILAAIVFALYARSYQMQ 509 (524)
T ss_dssp H----HHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC---------
T ss_pred c----ccccccccccc--cccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0 112211 1111 12337778888888888887777766543
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.76 E-value=6.3e-17 Score=162.80 Aligned_cols=313 Identities=10% Similarity=-0.001 Sum_probs=188.9
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc-chhhhH
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLN-WALGFG 108 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g-~~~~F~ 108 (439)
.+.+.++++|++.|+|.|...|...+++.|++|+++ |++++++...+.++|.++||.+++++.+..+ ||+.|+
T Consensus 117 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~ 190 (451)
T 1pw4_A 117 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALY 190 (451)
T ss_dssp SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTH
T ss_pred ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 356678999999999999999999999999999876 9999999999999999999999999888888 999999
Q ss_pred HHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCC
Q 013611 109 IPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDG 188 (439)
Q Consensus 109 i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (439)
+.++..++..++.++..++.+..+...+++. .+..+..+.-++... +
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~------~--- 237 (451)
T 1pw4_A 191 MPAFCAILVALFAFAMMRDTPQSCGLPPIEE------------------------YKNDYPDDYNEKAEQ------E--- 237 (451)
T ss_dssp HHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT------------------------TCCC---------------------
T ss_pred HHHHHHHHHHHHHHhhccCCHhhcCCCChhh------------------------hcccccccchhhhhc------c---
Confidence 9887766655544332222111100000000 000000000000000 0
Q ss_pred CCCchhhHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhh
Q 013611 189 KLCTLEDVEEAKAL---LRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDC 265 (439)
Q Consensus 189 ~~~~~~~v~~~k~~---~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~ 265 (439)
... .+.. .+.. ..+..+.+........+....+.++. .+....| ......+.+..+..+..++..++.++
T Consensus 238 ~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~ 310 (451)
T 1pw4_A 238 LTA--KQIF-MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPT---YLKEVKH-FALDKSSWAYFLYEYAGIPGTLLCGW 310 (451)
T ss_dssp -CC--THHH-HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH---HBTTBSC-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc--ccch-HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0000 0111 11122222222232322222233332 2222222 11222345666666666776666666
Q ss_pred hhhhhcccccCCCCCCCchhHHhHHHHHHH-HHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHH
Q 013611 266 IFVPITRYFTQNPSGITMLQRIGAGMLLSS-ISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADV 344 (439)
Q Consensus 266 ~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~ 344 (439)
+.+++.+ +.++.+.++.++.. +++.++.... ..+.++.++..++.|++..
T Consensus 311 l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~ 361 (451)
T 1pw4_A 311 MSDKVFR---------GNRGATGVFFMTLVTIATIVYWMNP--------------------AGNPTVDMICMIVIGFLIY 361 (451)
T ss_dssp HHHHTST---------TCHHHHHHHHHHHHHHHHHHTTSCC--------------------TTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhc---------CCchhHHHHHHHHHHHHHHHHHHhc--------------------ccCHHHHHHHHHHHHHHHh
Confidence 6543311 22234444544443 4443333210 1245666677778888888
Q ss_pred HHhhhhHHHHHhhcChhhHHHHHHHHHHHhhh-hhhhhhHHHhhhhccccCCCCCCCCCCCcccchhhHHHHHHHHHHHH
Q 013611 345 FTIVGLQEFFYDQIPKELKSFGLSIYMSVLGV-GGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAG 423 (439)
Q Consensus 345 l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~i-G~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~l~~l 423 (439)
...+....++.+..|++.||+++|+.+...++ |+.+++.+.+.+.+.. ++...|+..+++.++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~----------------g~~~~~~~~~~~~~~ 425 (451)
T 1pw4_A 362 GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF----------------GWDGGFMVMIGGSIL 425 (451)
T ss_dssp HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----------------CSHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------CcHHHHHHHHHHHHH
Confidence 88888788999999999999999999999999 9999999999886421 245677778888888
Q ss_pred HHHHHHHHhc
Q 013611 424 GLLAFLYFAK 433 (439)
Q Consensus 424 ~~~i~~~~~~ 433 (439)
+.++.+...+
T Consensus 426 ~~~~~~~~~~ 435 (451)
T 1pw4_A 426 AVILLIVVMI 435 (451)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8777666543
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.68 E-value=4e-15 Score=149.12 Aligned_cols=265 Identities=12% Similarity=0.065 Sum_probs=162.8
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhh-hccc-----
Q 013611 29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQ-DNLN----- 102 (439)
Q Consensus 29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~-~~~g----- 102 (439)
..+.+.++++|++.|+|.|...|...+++.+++|+++ |++++++...+.++|.++||.+++++. +..+
T Consensus 114 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~ 187 (438)
T 3o7q_A 114 IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQD 187 (438)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHH
T ss_pred cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 3467889999999999999999999999999999988 999999999999999999999999998 5554
Q ss_pred --------------------chhhhHHHHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcch
Q 013611 103 --------------------WALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASED 162 (439)
Q Consensus 103 --------------------~~~~F~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~ 162 (439)
||+.|++.++..++..+++++.+. ++.+++.+++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~~------------------------ 241 (438)
T 3o7q_A 188 VLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF--PALQSDNHSD------------------------ 241 (438)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCTTTCCCC------------------------
T ss_pred ccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC--Cccccccccc------------------------
Confidence 999998777665555544433211 1111100000
Q ss_pred hhcccccchhhhhhhhcCCCCCCCCCCCCchhhHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCC
Q 013611 163 EAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALL---RLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITR 239 (439)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~---~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~ 239 (439)
++. .+..++.+..+ ++....+....+...+....+..+... .+...|
T Consensus 242 ----~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g- 291 (438)
T 3o7q_A 242 ----AKQ-----------------------GSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYA--VEEIPG- 291 (438)
T ss_dssp ----SST-----------------------TSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHSTT-
T ss_pred ----ccc-----------------------cchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhccCC-
Confidence 000 00001111111 111111122222222222222222220 111111
Q ss_pred CccccchhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 013611 240 SIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLID 319 (439)
Q Consensus 240 g~~~~~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 319 (439)
-.....+.+..+..+..++..++.+++.+++ +.++.+.++.++.++++.+..+.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-----------~~~~~~~~~~~~~~~~~~~~~~~--------------- 345 (438)
T 3o7q_A 292 MTAGFAANYLTGTMVCFFIGRFTGTWLISRF-----------APHKVLAAYALIAMALCLISAFA--------------- 345 (438)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----------CHHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------cchHHHHHHHHHHHHHHHHHHHc---------------
Confidence 1122334555566666666666666655432 33345566666666665554432
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhcc
Q 013611 320 KPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEA 391 (439)
Q Consensus 320 ~~~~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~ 391 (439)
.+. +.+...++.+++.....+....++.+..|++ +++++++.. ...+|+.+++.+.+.+.+.
T Consensus 346 -------~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~ 407 (438)
T 3o7q_A 346 -------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDA 407 (438)
T ss_dssp -------CHH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHH
T ss_pred -------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 122 2344557788888888888888889999977 999999887 6779999999999988754
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.55 E-value=4e-15 Score=146.34 Aligned_cols=264 Identities=8% Similarity=-0.012 Sum_probs=159.3
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH
Q 013611 30 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGI 109 (439)
Q Consensus 30 ~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i 109 (439)
.+.+.+++.|++.|++.+...|...+++.|.+|+++ |+++++++..+.++|..+||.+++++.+..+||+.|++
T Consensus 86 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 86 SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence 467889999999999999999999999999999887 99999999999999999999999999998999999998
Q ss_pred HHHHHHHHHHHHHhcCcceeeecCCCCCCcchhHHHHHHHHhHhhccccCcchhhcccccchhhhhhhhcCCCCCCCCCC
Q 013611 110 PCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGK 189 (439)
Q Consensus 110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (439)
.++..++..+..+. ..++++++++++ ++ ...
T Consensus 160 ~~~~~~~~~~~~~~---~~~~~~~~~~~~----------------------------~~------------------~~~ 190 (375)
T 2gfp_A 160 LLVLCAGVTFSMAR---WMPETRPVDAPR----------------------------TR------------------LLT 190 (375)
T ss_dssp HHHHHHHHHCCCCC---SSCCCSTTTCCC----------------------------CC------------------TTT
T ss_pred HHHHHHHHHHHHHH---HCcccCCCCccc----------------------------cc------------------HHH
Confidence 88655554432222 111111111000 00 000
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcccCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhh
Q 013611 190 LCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVP 269 (439)
Q Consensus 190 ~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~g~g~~~~~~~~~~in~~~iii~~pl~~~~~~~ 269 (439)
.. .+..+.+++.... +........+....+.++. ......+ ......+.+..+..+..++..++.+++
T Consensus 191 ~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~g-~~~~~~g~~~~~~~~~~~~~~~~~~~l--- 258 (375)
T 2gfp_A 191 SY--KTLFGNSGFNCYL---LMLIGGLAGIAAFEACSGV---LMGAVLG-LSSMTVSILFILPIPAAFFGAWFAGRP--- 258 (375)
T ss_dssp CS--THHHHHHHHHHHH---HHHHHHHHHHHHHHHHCSC---SSHHHHH-HHHHHHHHHHHTHHHHHHHHHHHHHTT---
T ss_pred HH--HHHhcCcchHHHH---HHHHHHHHHHHHHHHHHHH---HHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 00 1112222222221 1111122211111111110 0000010 001122344555555555554444443
Q ss_pred hcccccCCCCCCCchhHHhHHHHH-HHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 013611 270 ITRYFTQNPSGITMLQRIGAGMLL-SSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIV 348 (439)
Q Consensus 270 ~~~k~~~~~~~~~~~~~i~iG~~l-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~gige~l~~~ 348 (439)
.+|. +. ++.++..+ ..++.......... ..+.+..+...++.+++.+...+
T Consensus 259 -~~r~-------~~--~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~l~g~~~~~~~~ 310 (375)
T 2gfp_A 259 -NKRF-------ST--LMWQSVICCLLAGLLMWIPDWFG------------------VMNVWTLLVPAALFFFGAGMLFP 310 (375)
T ss_dssp -TTHH-------HH--HHHHHHHHHHHTSSSSSHHHHHH------------------HHHHHHHHHHHHHHHHHHHHTSS
T ss_pred -HHHH-------HH--HHHHHHHHHHHHHHHHHHHhhhc------------------cccHHHHHHHHHHHHHHHHHhhH
Confidence 2322 11 34444443 33332221111100 02455566778889999999988
Q ss_pred hhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611 349 GLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN 389 (439)
Q Consensus 349 ~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~ 389 (439)
.....+.+..| +.||+++|+.+...++|+.+++.+.+.+.
T Consensus 311 ~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 350 (375)
T 2gfp_A 311 LATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLP 350 (375)
T ss_dssp TTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHH
T ss_pred HHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88899999999 89999999999999999999999988775
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.33 E-value=8.5e-11 Score=119.45 Aligned_cols=84 Identities=19% Similarity=0.227 Sum_probs=69.9
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc--------
Q 013611 29 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDN-------- 100 (439)
Q Consensus 29 ~~~~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~~y~~~nlG~~ig~~l~g~l~~~-------- 100 (439)
..+.+.++++|++.|+|.|+..|...+++++..|+++ |++..+++..+..+|.++++.++..+...
T Consensus 123 a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (491)
T 4gc0_A 123 AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNT 196 (491)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccc
Confidence 4578899999999999999999999999999999877 99999999999999999999988877543
Q ss_pred ccchhhhHHHHHHHHHHH
Q 013611 101 LNWALGFGIPCAFMVAAL 118 (439)
Q Consensus 101 ~g~~~~F~i~~~~~~i~~ 118 (439)
..|++.+.+..+..++.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~ 214 (491)
T 4gc0_A 197 DGWRYMFASECIPALLFL 214 (491)
T ss_dssp THHHHHHHTTHHHHHHHH
T ss_pred hhhHHHhhhhhhhhhhhh
Confidence 356666666554444333
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.30 E-value=6.3e-12 Score=125.82 Aligned_cols=140 Identities=12% Similarity=0.080 Sum_probs=94.7
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC
Q 013611 246 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI 325 (439)
Q Consensus 246 ~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (439)
+.+..++.+..++..++.+++.+++.+ ++.+.++.++.++++....+.
T Consensus 262 g~~~~~~~~~~~~~~~~~g~l~dr~g~-----------~~~l~~~~~~~~~~~~~~~~~--------------------- 309 (417)
T 2cfq_A 262 GYVTTMGELLNASIMFFAPLIINRIGG-----------KNALLLAGTIMSVRIIGSSFA--------------------- 309 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCH-----------HHHHHHHHHHHHHHHHHHTTC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcH-----------HHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 345556666656666666666554332 334556666666655444321
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHH-HHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611 326 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSI-YMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN 404 (439)
Q Consensus 326 ~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl-~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~ 404 (439)
.+.+++++...+.+++.....+....++.+..|++.||++.|+ ++....+|+.++|.+.+.+.+.
T Consensus 310 -~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~------------- 375 (417)
T 2cfq_A 310 -TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES------------- 375 (417)
T ss_dssp -CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH-------------
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh-------------
Confidence 2344555566667777666666667889999999999999998 5888899999999999977531
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhcc
Q 013611 405 LNRAHLDYFYWLLAALSAGGLLAFLYFAKS 434 (439)
Q Consensus 405 l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~ 434 (439)
.++...|.+.+++++++.++.+...++
T Consensus 376 ---~g~~~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 376 ---IGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred ---cCcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 234567888888888887776655554
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.68 E-value=1e-06 Score=87.88 Aligned_cols=145 Identities=14% Similarity=0.059 Sum_probs=108.5
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.+++..+..+...+..|+.+.+.+++. .++.+.+|.++.+++.++..+....
T Consensus 64 ~g~~~~~~~~~~~~~~~~~G~l~dr~g-----------~r~~l~~~~~~~~~~~~~~~~~~~~----------------- 115 (451)
T 1pw4_A 64 LGFALSGISIAYGFSKFIMGSVSDRSN-----------PRVFLPAGLILAAAVMLFMGFVPWA----------------- 115 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSC-----------HHHHHHHHHHHHHHHHHHHHHCHHH-----------------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhcC-----------chHHHHHHHHHHHHHHHHHHhhhhc-----------------
Confidence 466777778888888888888765443 3346778888888888877762100
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN 404 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~ 404 (439)
..+.+++++..++.|++.+...+....++.+..|++.|++++|++....++|..+|+.+.+.+.+... .|
T Consensus 116 -~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-----~w---- 185 (451)
T 1pw4_A 116 -TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN-----DW---- 185 (451)
T ss_dssp -HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC-----CS----
T ss_pred -cccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cH----
Confidence 02566788889999999999999999999999999999999999999999999999999987653210 13
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611 405 LNRAHLDYFYWLLAALSAGGLLAFLYFAK 433 (439)
Q Consensus 405 l~~~~~~~~f~~~~~l~~l~~~i~~~~~~ 433 (439)
...|++.++++++..++.++..+
T Consensus 186 ------~~~f~~~~~~~~~~~~~~~~~~~ 208 (451)
T 1pw4_A 186 ------HAALYMPAFCAILVALFAFAMMR 208 (451)
T ss_dssp ------TTCTHHHHHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHHHHHHHHHhhcc
Confidence 34566777777766665555443
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.62 E-value=1.3e-06 Score=86.77 Aligned_cols=115 Identities=10% Similarity=0.048 Sum_probs=93.3
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.+++..+..+...+..|+.+.+.+++. .++.+.++.++.+++.++......
T Consensus 63 ~g~~~~~~~~~~~i~~~~~G~l~dr~g-----------~r~~l~~~~~~~~~~~~~~~~~~~------------------ 113 (438)
T 3o7q_A 63 AGLIQSAFYFGYFIIPIPAGILMKKLS-----------YKAGIITGLFLYALGAALFWPAAE------------------ 113 (438)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHSC-----------HHHHHHHHHHHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhc-----------chHHHHHHHHHHHHHHHHHHhccc------------------
Confidence 456677777777777778777765443 345678888888888777643221
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN 389 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~ 389 (439)
..+.+++++..++.|+|.+...+....++.+..|++.|+.++|+.+...++|..+++.+.+.+.
T Consensus 114 -~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 114 -IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred -cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1367888899999999999999999999999999999999999999999999999999998875
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.55 E-value=3.8e-06 Score=84.99 Aligned_cols=143 Identities=20% Similarity=0.155 Sum_probs=109.5
Q ss_pred cchhhhhhHHHHHHHHHHhhhhhhhh-hcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCC
Q 013611 244 PAASLQLFIGIGIITFIPIYDCIFVP-ITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPN 322 (439)
Q Consensus 244 ~~~~~~~in~~~iii~~pl~~~~~~~-~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (439)
..+++..+..+...+..|+.+++.++ +.+| +.+.+|.++.+++.++..+.
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r-----------~~~~~~~~~~~~~~~~~~~~------------------ 105 (491)
T 4aps_A 55 TAASIMAIYASMVYLSGTIGGFVADRIIGAR-----------PAVFWGGVLIMLGHIVLALP------------------ 105 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH-----------HHHHHHHHHHHHHHHHHHSC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccch-----------HHHHHHHHHHHHHHHHHHHh------------------
Confidence 34667778888888888888887765 3333 45677877777777665532
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhh--HHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCC
Q 013611 323 VTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKEL--KSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSW 400 (439)
Q Consensus 323 ~~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~--~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~ 400 (439)
.+.+++++..++.|+|++...+....++.+..|++. |+.++++++...++|..+|+.+.+.+.+.
T Consensus 106 ----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--------- 172 (491)
T 4aps_A 106 ----FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA--------- 172 (491)
T ss_dssp ----CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred ----hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh---------
Confidence 356677888899999999999999999999999988 88889999999999999999999988642
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHHHHHHHhccC
Q 013611 401 FADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSY 435 (439)
Q Consensus 401 ~~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~~~ 435 (439)
.++...|+..++..+++.++++...+++
T Consensus 173 -------~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 200 (491)
T 4aps_A 173 -------AGYHVAFSLAAIGMFIGLLVYYFGGKKT 200 (491)
T ss_dssp -------SCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -------hhHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 1235567777777777777766665544
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.40 E-value=2.5e-06 Score=83.15 Aligned_cols=133 Identities=17% Similarity=0.088 Sum_probs=102.2
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.+++..+..+...+..|+.+.+.+++.+| +.+.++.++.+++........
T Consensus 37 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~------------------- 86 (375)
T 2gfp_A 37 VQSVMGAYLLTYGVSQLFYGPISDRVGRR-----------PVILVGMSIFMLATLVAVTTS------------------- 86 (375)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHTTSCCC-----------CCCHHHHHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----------hhHHHHHHHHHHHHHHHHHhc-------------------
Confidence 45677777788888888888876644332 345577777887777766552
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhhccccCCCCCCCCCCC
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN 404 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~~~~ 404 (439)
+.+++++..++.|++.....+....++.+..|+++|+++++......++|..+++.+.+.+.+.
T Consensus 87 ---~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~------------- 150 (375)
T 2gfp_A 87 ---SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM------------- 150 (375)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH-------------
T ss_pred ---cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-------------
Confidence 5677888889999999999999999999999999999999999999999999999999877531
Q ss_pred cccchhhHHHHHHHHHHHHHHH
Q 013611 405 LNRAHLDYFYWLLAALSAGGLL 426 (439)
Q Consensus 405 l~~~~~~~~f~~~~~l~~l~~~ 426 (439)
.++...|+..+++.++..+
T Consensus 151 ---~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 151 ---WNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp ---HHHHHHHHHHHHHHHHHHC
T ss_pred ---ccHHHHHHHHHHHHHHHHH
Confidence 1335566666666666554
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.40 E-value=5.6e-06 Score=84.51 Aligned_cols=142 Identities=15% Similarity=0.084 Sum_probs=103.2
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 013611 245 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 324 (439)
Q Consensus 245 ~~~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.+++..+..+..++..++.+++.+++. +.++.+.++.++.+++.++..+.
T Consensus 56 ~g~~~~~~~~~~~~~~~~~G~l~dr~~----------g~r~~~~~~~~~~~~~~~~~~~~-------------------- 105 (524)
T 2xut_A 56 AKDVFHSFVIGVYFFPLLGGWIADRFF----------GKYNTILWLSLIYCVGHAFLAIF-------------------- 105 (524)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHTTSS----------CSHHHHHHHHHHHHHHHHHHHHT--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh----------cchHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 456667777777777777777665430 33446677887777777666643
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHH---HHHHhhhhhhhhhHHHhhhhccccCCCCCCCC
Q 013611 325 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSI---YMSVLGVGGFLSSILVSIINEATSRDGGDSWF 401 (439)
Q Consensus 325 ~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl---~~~~~~iG~~ig~~l~~~~~~~~~~~~~~~~~ 401 (439)
+.+.+++++..++.|+|++...+....++.+..|++.|+++++. ++...++|..+|+.+.+.+.+.
T Consensus 106 -~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---------- 174 (524)
T 2xut_A 106 -EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN---------- 174 (524)
T ss_dssp -SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT----------
T ss_pred -cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------
Confidence 11567778888999999999999999999999999999877666 8899999999999998877531
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 013611 402 ADNLNRAHLDYFYWLLAALSAGGLLAFLYFAK 433 (439)
Q Consensus 402 ~~~l~~~~~~~~f~~~~~l~~l~~~i~~~~~~ 433 (439)
.++...|++.+++.+++.++++...+
T Consensus 175 ------~g~~~~f~~~~~~~~~~~~~~~~~~~ 200 (524)
T 2xut_A 175 ------FGAAVAFGIPGVLMFVATVFFWLGRK 200 (524)
T ss_dssp ------SCHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred ------ccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 12355677777777766665544333
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.62 E-value=0.0014 Score=65.81 Aligned_cols=125 Identities=16% Similarity=0.044 Sum_probs=84.1
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhcccccCCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-CC--C
Q 013611 247 SLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDK-PN--V 323 (439)
Q Consensus 247 ~~~~in~~~iii~~pl~~~~~~~~~~k~~~~~~~~~~~~~i~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~--~ 323 (439)
++.+...+..++..++.+.+.|++.|| +-+.++.++..++.+..++.... ...+.. .. .
T Consensus 59 ~~~s~~~~G~~iG~~~~G~laDr~GRk-----------~~l~~~~~l~~i~~i~~a~~~~~-------~~~~~~~~~~~~ 120 (491)
T 4gc0_A 59 FCVASALIGCIIGGALGGYCSNRFGRR-----------DSLKIAAVLFFISGVGSAWPELG-------FTSINPDNTVPV 120 (491)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHTCHH-----------HHHHHHHHHHHHHHHHHHCTTTT-------TSCSSSSSSCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCH-----------HHHHHHHHHHHHHHHHHHHHhhh-------hhhhcchhHHHH
Confidence 334444455555555666655544433 45667777777776665543100 000000 00 0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcChhhHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 013611 324 TIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN 389 (439)
Q Consensus 324 ~~~~~~~~~i~~~~l~gige~l~~~~~~~~~~~~aP~~~~g~~~gl~~~~~~iG~~ig~~l~~~~~ 389 (439)
....+.+.+++..++.|+|++...+....++.+.+|++.|+...++......+|..++..+.....
T Consensus 121 ~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~ 186 (491)
T 4gc0_A 121 YLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA 186 (491)
T ss_dssp GGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence 001356778899999999999999999999999999999999999999999999999887776654
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=96.92 E-value=0.00028 Score=69.82 Aligned_cols=86 Identities=5% Similarity=0.001 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhHhhhhhhHHH-HHHHHHHHHHHHHHHHHHhhhcccchhhhHHH
Q 013611 32 IIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNW-WYFGISFGANSTILVVIYIQDNLNWALGFGIP 110 (439)
Q Consensus 32 ~~~~~~~l~l~gig~g~~~p~~~a~~~~~f~~~~~~~~~~r~~~f~~-~y~~~nlG~~ig~~l~g~l~~~~g~~~~F~i~ 110 (439)
.+.+.+...+.+++.+...+...++..+.+|++. |++++++ +..+.++|.++||.++|++.+..||+..|.+.
T Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~ 385 (417)
T 2cfq_A 312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL 385 (417)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHH
Confidence 4455566666777777777778889999999765 8999998 47777899999999999999888999999988
Q ss_pred HHHHHHHHHHHHh
Q 013611 111 CAFMVAALVLFLL 123 (439)
Q Consensus 111 ~~~~~i~~~l~~~ 123 (439)
++..+++.++.+.
T Consensus 386 ~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 386 GLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 8777777665544
No 15
>1p1p_A AA-conotoxin PIVA; neurotoxin, acetylcholine receptor binding, transcription regulation; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.3
Probab=21.67 E-value=36 Score=18.26 Aligned_cols=15 Identities=13% Similarity=0.521 Sum_probs=11.1
Q ss_pred CCCccCCCCCCCccC
Q 013611 12 SSSDCQNNNTAKSCS 26 (439)
Q Consensus 12 ~~~~~~~~~~~~~~~ 26 (439)
.-|||+|.+...-|.
T Consensus 10 achpc~c~~rp~yc~ 24 (26)
T 1p1p_A 10 ACHPCSCKDRPSYCG 24 (26)
T ss_dssp SCCTTTSTTCCGGGC
T ss_pred cccccccCCCCCccC
Confidence 358999988776664
Done!