BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013613
(439 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B4UHG5|PNP_ANASK Polyribonucleotide nucleotidyltransferase OS=Anaeromyxobacter sp.
(strain K) GN=pnp PE=3 SV=1
Length = 721
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 9/73 (12%)
Query: 284 KSEHDVNVHTQCSKDAFPANEWGGISSKELDEAVMLEAALFGEAATGCSKYVQSDLDSNA 343
++E D++V S+DA E G ++E+ EAVM+EA LFG+AA VQ LD+
Sbjct: 169 RAEADLDVVMAASRDAIVMVEGG---AQEVSEAVMIEALLFGQAA------VQPLLDAQD 219
Query: 344 GPGSSSGSRASSS 356
+++G++A S
Sbjct: 220 ALRAATGNKARRS 232
>sp|B8JFZ1|PNP_ANAD2 Polyribonucleotide nucleotidyltransferase OS=Anaeromyxobacter
dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=pnp PE=3
SV=1
Length = 721
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 9/70 (12%)
Query: 284 KSEHDVNVHTQCSKDAFPANEWGGISSKELDEAVMLEAALFGEAATGCSKYVQSDLDSNA 343
++E D++V S+DA E G ++E+ EAVM+EA LFG+AA VQ LD+
Sbjct: 169 RAEADLDVVMAASRDAIVMVEGG---AQEVSEAVMIEALLFGQAA------VQPLLDAQD 219
Query: 344 GPGSSSGSRA 353
+++G++A
Sbjct: 220 ALRAATGNKA 229
>sp|P34223|UBX1_YEAST UBX domain-containing protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SHP1 PE=1 SV=1
Length = 423
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 7 ETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFS 43
ET+ F ++T S ++A+Q L E+ G+LNEA+N+Y++
Sbjct: 7 ETIQQFMALTNVSHNIAVQYLSEF-GDLNEALNSYYA 42
>sp|Q2IQ01|PNP_ANADE Polyribonucleotide nucleotidyltransferase OS=Anaeromyxobacter
dehalogenans (strain 2CP-C) GN=pnp PE=3 SV=2
Length = 721
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 9/69 (13%)
Query: 284 KSEHDVNVHTQCSKDAFPANEWGGISSKELDEAVMLEAALFGEAATGCSKYVQSDLDSNA 343
+++ D++V S+DA E G ++E+ EAVM+EA LFG+AA VQ LD+
Sbjct: 169 RADADLDVVMAASRDAIVMVEGG---AQEVSEAVMIEALLFGQAA------VQPLLDAQD 219
Query: 344 GPGSSSGSR 352
+++G++
Sbjct: 220 ALRAATGNK 228
>sp|A7H9F8|PNP_ANADF Polyribonucleotide nucleotidyltransferase OS=Anaeromyxobacter sp.
(strain Fw109-5) GN=pnp PE=3 SV=1
Length = 722
Score = 36.2 bits (82), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 284 KSEHDVNVHTQCSKDAFPANEWGGISSKELDEAVMLEAALFGEAAT 329
++E D++V S+DA E G +KE+ E VM++A LFG+AA
Sbjct: 169 RAEADLDVIMAASRDAIVMVEGG---AKEVSEQVMVDALLFGQAAV 211
>sp|B2V900|PNP_SULSY Polyribonucleotide nucleotidyltransferase OS=Sulfurihydrogenibium
sp. (strain YO3AOP1) GN=pnp PE=3 SV=1
Length = 703
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 7/123 (5%)
Query: 284 KSEHDVNVHTQCSKDAFPANEWGGISSKELDEAVMLEAALFGEAATGCSKYVQSDLDSNA 343
K++ D+ + SKDA E G +KE+ E V+LEA LFG +Q +L +
Sbjct: 169 KAKSDLEIVVAGSKDAIVMVEGG---AKEVPEEVILEAMLFGHQEIKKLIELQEELRAKY 225
Query: 344 GPGSSSGSRASSSVMAQQSLRE----QQDDEYLASLLADREKEMNALKEAESLQLSRDES 399
G ++ ++ +E + + + S +R K++NA+ E L E
Sbjct: 226 GKEKIEIPIDEEEILLKEKFKELAYVRIKEAFNISDKKERNKQINAIFEEIKTTLEIPEE 285
Query: 400 QKK 402
+ K
Sbjct: 286 KVK 288
>sp|Q8AVS8|LRC59_XENLA Leucine-rich repeat-containing protein 59 OS=Xenopus laevis
GN=lrrc59 PE=2 SV=1
Length = 307
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 124 GGVMGLPAEFSSWNEQPY------HSGQMPYDYDGARTSSYHGRDTRDNLLRDNGSHFYG 177
++ LP+EF + H +P + A+ S D +DN L+ + + G
Sbjct: 72 NQIVQLPSEFGRLMNLQHLDLLQNHLMSLPVSF--AQLKSLKWLDLKDNPLKPDLAKVAG 129
Query: 178 NDIEEQMI----QAAIEASKQEASSGSGVVQRELELPEDDEFSRAISLSLKTAE-QEKTI 232
+ ++E+ Q ++ K S +QR+L+L D E + + + E QE+ +
Sbjct: 130 DCLDEKQCKECAQRVLQYMKSVQSDHEIELQRKLQL--DKERKKKLEAKQRVKEEQEREM 187
Query: 233 RGQGVKD-RDRKLEVYDLVKEAEKTNNSTRK 262
R + + ++RK Y+ ++EAE+ NS +K
Sbjct: 188 RKRKKQQQKERKRRDYNAMQEAERALNSNKK 218
>sp|Q12395|DCN1_YEAST Defective in cullin neddylation protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DCN1 PE=1
SV=1
Length = 269
Score = 33.5 bits (75), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 4 PTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSE 44
P QE +++FTS+T V+ + L+ N+N A+N Y+ +
Sbjct: 13 PEQEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYDK 53
>sp|Q5REY7|UBXN7_PONAB UBX domain-containing protein 7 OS=Pongo abelii GN=UBXN7 PE=2
SV=2
Length = 489
Score = 33.1 bits (74), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 9 VDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEG 45
+ FT+ITGAS+SV LE NL AV + G
Sbjct: 17 IQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGG 53
>sp|O94888|UBXN7_HUMAN UBX domain-containing protein 7 OS=Homo sapiens GN=UBXN7 PE=1
SV=2
Length = 489
Score = 33.1 bits (74), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 9 VDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEG 45
+ FT+ITGAS+SV LE NL AV + G
Sbjct: 17 IQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGG 53
>sp|Q6P5G6|UBXN7_MOUSE UBX domain-containing protein 7 OS=Mus musculus GN=Ubxn7 PE=1
SV=2
Length = 467
Score = 33.1 bits (74), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 9 VDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEG 45
+ FT+ITGAS+SV LE NL AV + G
Sbjct: 17 IQQFTAITGASESVGKHMLEACNNNLEMAVTMFLDGG 53
>sp|A3CPX8|RNY_STRSV Ribonuclease Y OS=Streptococcus sanguinis (strain SK36) GN=rny PE=3
SV=1
Length = 537
Score = 32.0 bits (71), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 218 AISLSLKTAEQEKT-IRGQGVKDRDRKLEVYDLVKEAEKTNNSTRKPGKSSVQEGAENMR 276
A L+L AEQE T +RGQ ++ D +VKEA++ +S +K +E A R
Sbjct: 34 AAELTLLNAEQEATNLRGQAEREADL------IVKEAKRETSSLKKEALLEAKEEARKYR 87
Query: 277 SQSPMRYKSE 286
Q +KSE
Sbjct: 88 EQVDAEFKSE 97
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.125 0.345
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,366,927
Number of Sequences: 539616
Number of extensions: 6515605
Number of successful extensions: 21877
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 150
Number of HSP's that attempted gapping in prelim test: 21663
Number of HSP's gapped (non-prelim): 540
length of query: 439
length of database: 191,569,459
effective HSP length: 121
effective length of query: 318
effective length of database: 126,275,923
effective search space: 40155743514
effective search space used: 40155743514
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)