Query 013613
Match_columns 439
No_of_seqs 112 out of 120
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 05:37:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013613.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013613hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1363 Predicted regulator of 99.9 5.3E-25 1.1E-29 225.6 14.9 342 30-438 2-408 (460)
2 PF14555 UBA_4: UBA-like domai 99.3 2.1E-12 4.6E-17 93.6 5.4 41 6-46 1-41 (43)
3 KOG1364 Predicted ubiquitin re 96.6 0.0045 9.8E-08 63.5 6.6 46 5-50 6-52 (356)
4 PF03943 TAP_C: TAP C-terminal 96.4 0.0026 5.7E-08 48.5 2.6 39 6-44 1-39 (51)
5 PF00627 UBA: UBA/TS-N domain; 95.9 0.017 3.7E-07 40.6 4.6 35 5-40 2-36 (37)
6 smart00804 TAP_C C-terminal do 95.2 0.04 8.6E-07 44.1 4.9 39 5-43 12-50 (63)
7 cd00194 UBA Ubiquitin Associat 95.1 0.058 1.3E-06 37.4 5.0 36 6-42 2-37 (38)
8 smart00165 UBA Ubiquitin assoc 94.8 0.071 1.5E-06 36.8 4.8 36 6-42 2-37 (37)
9 PRK06369 nac nascent polypepti 93.0 0.18 3.9E-06 45.0 5.0 38 3-40 74-111 (115)
10 COG1308 EGD2 Transcription fac 92.3 0.23 5E-06 44.9 4.8 38 3-40 82-119 (122)
11 TIGR00264 alpha-NAC-related pr 92.1 0.25 5.5E-06 44.2 4.8 36 4-39 77-112 (116)
12 cd01774 Faf1_like2_UBX Faf1 ik 90.8 0.19 4.2E-06 41.7 2.6 20 413-432 4-23 (85)
13 smart00726 UIM Ubiquitin-inter 89.5 0.2 4.4E-06 34.1 1.4 19 211-229 2-20 (26)
14 cd01771 Faf1_UBX Faf1 UBX doma 89.3 0.3 6.5E-06 40.2 2.5 20 413-432 4-23 (80)
15 PF02809 UIM: Ubiquitin intera 87.4 0.58 1.3E-05 29.6 2.3 16 180-195 2-17 (18)
16 cd01773 Faf1_like1_UBX Faf1 ik 86.4 0.53 1.2E-05 39.5 2.4 20 414-433 6-25 (82)
17 KOG2086 Protein tyrosine phosp 86.0 0.28 6.1E-06 51.2 0.6 41 6-46 5-45 (380)
18 PF02809 UIM: Ubiquitin intera 83.9 0.4 8.8E-06 30.3 0.4 16 210-225 2-17 (18)
19 smart00726 UIM Ubiquitin-inter 83.6 0.95 2.1E-05 30.9 2.1 21 180-200 1-21 (26)
20 PRK09377 tsf elongation factor 79.6 3.3 7.2E-05 41.8 5.3 45 1-45 1-45 (290)
21 TIGR00116 tsf translation elon 78.5 3.7 7.9E-05 41.5 5.2 44 1-45 1-44 (290)
22 cd01767 UBX UBX (ubiquitin reg 76.9 2.3 4.9E-05 33.8 2.6 19 414-432 3-21 (77)
23 smart00166 UBX Domain present 74.5 2.8 6E-05 33.6 2.6 20 413-432 4-23 (80)
24 PF07946 DUF1682: Protein of u 70.7 13 0.00028 37.3 6.8 28 356-383 256-283 (321)
25 PRK12332 tsf elongation factor 70.4 8.5 0.00018 36.9 5.2 42 4-45 3-44 (198)
26 cd01770 p47_UBX p47-like ubiqu 70.3 3.8 8.2E-05 33.6 2.5 19 413-431 4-22 (79)
27 PF00789 UBX: UBX domain; Int 69.7 5.1 0.00011 31.7 3.1 20 413-432 6-25 (82)
28 cd01772 SAKS1_UBX SAKS1-like U 69.5 4.3 9.3E-05 32.9 2.6 20 413-432 4-23 (79)
29 KOG1363 Predicted regulator of 68.4 9.6 0.00021 40.9 5.6 21 9-29 4-24 (460)
30 KOG3077 Uncharacterized conser 68.3 1.9 4.2E-05 43.2 0.5 38 5-42 8-45 (260)
31 smart00546 CUE Domain that may 68.2 9 0.0002 27.6 3.8 29 15-43 13-41 (43)
32 KOG0163 Myosin class VI heavy 65.5 14 0.0003 42.8 6.2 34 364-397 915-951 (1259)
33 CHL00098 tsf elongation factor 65.1 11 0.00024 36.3 4.8 40 6-45 2-41 (200)
34 KOG2199 Signal transducing ada 64.7 3.9 8.5E-05 43.7 1.9 23 210-232 164-186 (462)
35 PF02845 CUE: CUE domain; Int 64.5 11 0.00024 27.2 3.6 38 6-43 2-40 (42)
36 COG0264 Tsf Translation elonga 62.7 14 0.0003 38.0 5.2 44 1-44 1-44 (296)
37 KOG2935 Ataxin 3/Josephin [Gen 58.0 23 0.00051 36.3 5.8 44 179-234 216-259 (315)
38 PF15236 CCDC66: Coiled-coil d 55.4 91 0.002 29.5 8.9 45 351-395 39-84 (157)
39 PF06936 Selenoprotein_S: Sele 53.0 46 0.001 32.0 6.7 19 394-412 109-127 (190)
40 KOG1029 Endocytic adaptor prot 52.8 41 0.00089 39.2 7.2 21 306-326 244-265 (1118)
41 PRK05441 murQ N-acetylmuramic 43.7 32 0.00069 34.4 4.3 35 9-43 239-273 (299)
42 KOG1071 Mitochondrial translat 40.1 42 0.00092 35.2 4.6 35 5-39 46-80 (340)
43 KOG3054 Uncharacterized conser 38.4 94 0.002 32.0 6.6 37 375-411 134-172 (299)
44 COG5148 RPN10 26S proteasome r 38.3 28 0.00061 34.5 2.8 23 212-234 207-230 (243)
45 KOG1029 Endocytic adaptor prot 37.4 1E+02 0.0023 36.1 7.4 26 77-104 88-113 (1118)
46 KOG4364 Chromatin assembly fac 36.2 51 0.0011 37.7 4.7 22 374-395 300-321 (811)
47 TIGR00274 N-acetylmuramic acid 35.9 50 0.0011 33.1 4.3 35 9-43 234-268 (291)
48 PRK12570 N-acetylmuramic acid- 34.9 52 0.0011 33.0 4.2 35 9-43 235-269 (296)
49 KOG2689 Predicted ubiquitin re 34.8 1.9E+02 0.0042 30.0 8.1 18 414-431 211-228 (290)
50 TIGR00570 cdk7 CDK-activating 32.7 1.7E+02 0.0037 30.4 7.5 37 362-399 137-173 (309)
51 KOG2756 Predicted Mg2+-depende 32.3 28 0.0006 36.2 1.9 38 9-46 29-66 (349)
52 PF06098 Radial_spoke_3: Radia 32.0 1.5E+02 0.0033 30.4 6.9 48 361-410 156-203 (291)
53 PF06972 DUF1296: Protein of u 32.0 1.3E+02 0.0028 24.7 5.2 39 6-44 6-45 (60)
54 PF04221 RelB: RelB antitoxin; 28.3 56 0.0012 26.8 2.7 26 21-46 14-39 (83)
55 KOG1144 Translation initiation 27.9 91 0.002 36.6 5.0 10 188-197 114-123 (1064)
56 PF03793 PASTA: PASTA domain; 27.1 46 0.001 24.9 1.9 20 14-33 5-24 (63)
57 PF11547 E3_UbLigase_EDD: E3 u 27.0 59 0.0013 26.0 2.5 42 5-46 9-51 (53)
58 KOG3654 Uncharacterized CH dom 26.6 1.1E+02 0.0024 34.3 5.2 37 362-398 396-432 (708)
59 KOG3228 Uncharacterized conser 25.0 1.8E+02 0.0038 29.1 5.8 62 366-431 122-187 (226)
60 PF09107 SelB-wing_3: Elongati 24.3 88 0.0019 24.1 2.9 23 9-31 13-35 (50)
61 COG2103 Predicted sugar phosph 22.5 1.1E+02 0.0024 31.7 4.1 35 8-42 236-270 (298)
62 KOG3054 Uncharacterized conser 21.5 1.7E+02 0.0036 30.3 5.0 9 428-436 203-211 (299)
63 KOG3450 Huntingtin interacting 21.4 1.4E+02 0.0031 27.2 4.1 40 4-43 79-118 (119)
64 PLN03086 PRLI-interacting fact 21.3 3.2E+02 0.007 30.6 7.5 37 357-395 7-43 (567)
65 KOG3878 Protein involved in ma 21.2 1.3E+02 0.0028 32.3 4.3 12 182-193 33-44 (469)
66 PTZ00266 NIMA-related protein 21.0 2.9E+02 0.0062 33.0 7.4 9 305-313 426-434 (1021)
67 PRK09510 tolA cell envelope in 20.7 6E+02 0.013 27.2 9.1 17 353-369 55-71 (387)
68 PF06637 PV-1: PV-1 protein (P 20.3 2.8E+02 0.0062 30.1 6.6 30 366-395 306-335 (442)
No 1
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=99.92 E-value=5.3e-25 Score=225.55 Aligned_cols=342 Identities=17% Similarity=0.087 Sum_probs=221.2
Q ss_pred hCCChHHHHHHhhhcCCccCCCCCCCCCCCCCCCCccccCCCCCCCCCCcccchhhhhhhcC-CCCCCCChhhhhhhhhc
Q 013613 30 YGGNLNEAVNAYFSEGHRDILNPTAVAYPYPSPGLSSLDMNSNNIQARPSRLSQLFSAARSF-RPSSLLDPNYRRSLLNE 108 (439)
Q Consensus 30 h~wdL~~AVNAYy~~~~R~~~~~~~~p~~~~~dD~~~mdid~~~~~~~~~~~~~~~~aa~~~-~Pf~LLDP~f~r~lfd~ 108 (439)
++|||..||+.++...+-... .. |+..++-...+++++..+. ++.+.-..+ +||.++||.|...++++
T Consensus 2 ~~~d~~~~i~~~~~~~~~~~~-e~---~~~~~~~~~~~~~~~~~~~-------~~~~~r~~~~~~~~~vd~~~~~r~~~~ 70 (460)
T KOG1363|consen 2 ANWDLVEAIEGVLPQEDGALS-EE---PMGEPGQNDDEDANQEAPP-------PLRPRRTIFADPFPVVDPDFNYRDDNV 70 (460)
T ss_pred ccHhHHHHHhhcccccCcccc-cc---cccCCCccccccccCCCCC-------ccCCcccccCCccccccchhcccccCC
Confidence 579999999999888773332 11 1222222211444422222 112222222 99999999998888883
Q ss_pred ccCCCCCCCCCCCCCCCccccCccccCCCCCCCCCCCCCccccCCcccccCCCCcccceEecCCCC--------------
Q 013613 109 LSASLTSPQPVASHTGGVMGLPAEFSSWNEQPYHSGQMPYDYDGARTSSYHGRDTRDNLLRDNGSH-------------- 174 (439)
Q Consensus 109 ~~s~~~~r~p~vshPrevreiPiEvkd~n~~~~~sg~~p~iedvt~t~~a~gp~v~gtvi~D~~~~-------------- 174 (439)
... .|+++|.|+.+++.+++.+++++.+.+++...++++||+-+.+.|+| .++.++.++.+.
T Consensus 71 --~~~-~~~~~v~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~s~p~~~~~~~ 146 (460)
T KOG1363|consen 71 --DVS-PRPNTVGESKEIRSNEGGVPSSNGLLGGWSDNRTTEDVLSLALSLLP-LQSIVGGDPSSGDNIVSTPQGDSRET 146 (460)
T ss_pred --Ccc-cCCCcccccceeeccCCCccccccccccccccccccccchhhhhcCc-hhhccccCCCCCCccccCCcchHHHH
Confidence 222 89999999999999999999999999999999999999999999999 888888888310
Q ss_pred -------CCCCC----hHHHHHHHHHHHhhhhhhcCCCCcccccCCCCchHHHHHhhhchhHHHHHHHhhhcCcccCcch
Q 013613 175 -------FYGND----IEEQMIQAAIEASKQEASSGSGVVQRELELPEDDEFSRAISLSLKTAEQEKTIRGQGVKDRDRK 243 (439)
Q Consensus 175 -------~y~ND----iEeemiRaAIEASK~eaee~~~~~q~~~~~~eDdDLakAIsLS~ee~E~ek~lr~q~~~~~~~~ 243 (439)
.|+-+ -.|-+.-++.+|++++ -+..+.----.++.
T Consensus 147 f~~~f~~ry~~~~p~F~~d~l~~a~~~A~~~~-~~~~~~l~~~~~~~--------------------------------- 192 (460)
T KOG1363|consen 147 FVDNFGDRYGSELPSFYTDVLRNAFLEAFDRE-SEARKLLAIYLHDD--------------------------------- 192 (460)
T ss_pred HHHHHHHhcCCCCCccchhHHHHHHHHHHhhh-hhhheeeEEecCCC---------------------------------
Confidence 33222 2456666777777776 33322111111111
Q ss_pred hhhhhhhhhhhhccCCCCCCCCCCccccccccccCCCCccCCc-------------------CccCCCCCCCCCCCCCCC
Q 013613 244 LEVYDLVKEAEKTNNSTRKPGKSSVQEGAENMRSQSPMRYKSE-------------------HDVNVHTQCSKDAFPANE 304 (439)
Q Consensus 244 ~~~~~~~~~~~~~~n~r~~~~~~~~qd~~edveeqplvr~rsr-------------------~~~~~~~q~~g~~fp~~E 304 (439)
.+..+..........+...+.+.+++|+.++.. ....++....++.|| ..
T Consensus 193 ----------~~~~~~~F~~~iL~~e~v~~~l~~~~llw~~dvt~~e~~~~~~~~~~r~~~~~~~~~~~~~~~~~fP-~~ 261 (460)
T KOG1363|consen 193 ----------KSDDTNVFCGQILCNEAVVDYLRENFLLWGWDVTESENLLVFNSLLNRSISSPAAVTNKASKSERFP-LV 261 (460)
T ss_pred ----------CcccHHHHHHhhhhhHHHHHHHhhceeeecccccCchhhHHHHHHhhcccchhhhhhcchhhcccCc-hh
Confidence 011111222222333333344445555555543 122244444678999 99
Q ss_pred cCCCchhhhhHHHHHHHHHhcccCCCCCccc-ccCCCCCCCCCCCCCCCCCchHHHHHHHHHhh-hHHHHHHHHhhHHHH
Q 013613 305 WGGISSKELDEAVMLEAALFGEAATGCSKYV-QSDLDSNAGPGSSSGSRASSSVMAQQSLREQQ-DDEYLASLLADREKE 382 (439)
Q Consensus 305 WGGIss~e~dea~mleaamfggipe~~~~y~-~~~~~~~~~~~~~~~~~psps~~aq~~LR~qQ-DeaYlaSL~ADqEKe 382 (439)
|++|.++.++|++|+..+|+|++..- +|. .++.. -....+.+++.+.+.++|.++++| |++|++||+||+.|+
T Consensus 262 ~iv~~~~~~~Ell~~l~g~~~~~e~~--~~~~~~~~~---~~~~~q~~~~~~~er~~r~~~~~eQd~eyq~sle~Dr~r~ 336 (460)
T KOG1363|consen 262 RIVIGSRSPEELLRYLQGVTGVDEEM--TLLLVAFEE---EERRLQMRRSEQDEREARLALEQEQDDEYQASLEADRVRE 336 (460)
T ss_pred hhhhcCCCHHHHHHHHHhcCCchHHH--HHHHhhhhh---hhHHHhhcccchhHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999884 333 11110 011167788999999999888776 999999999999993
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhh--h----------------ceeEEEeeCCCceeeeeeeeeecccc
Q 013613 383 MNALKEAESLQLSRDESQKKILEEEVVKL--L----------------SFGCLIYSPCSFVLKTTFLCYLKTLT 438 (439)
Q Consensus 383 ~k~~~e~E~~~~~eee~~~k~~ee~~~k~--~----------------s~~~~~~~p~~~~~~~~f~~~~~~~~ 438 (439)
..+.+.++..++ +.+|+..+||++... + ..++.|++|+|+|+.|||+.-.|+.+
T Consensus 337 ~e~e~~~e~~r~--e~er~~~~ee~e~~R~~l~~es~lp~EP~a~~~~~~~l~iR~P~G~r~~RrF~~s~~~q~ 408 (460)
T KOG1363|consen 337 AEAEQAAEEFRL--EKERKEEEEERETARQLLALESSLPPEPSASEEEAITVAIRLPSGTRLERRFLKSDKLQI 408 (460)
T ss_pred HHHHHhhHHHHH--hhhhhhHHHHHHHHHHHHhhhccCCCCCCcCcccceeeEEECCCCCeeeeeeecccchhH
Confidence 333333333332 222222222222222 1 78999999999999999998777643
No 2
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=99.33 E-value=2.1e-12 Score=93.62 Aligned_cols=41 Identities=49% Similarity=0.733 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613 6 QETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH 46 (439)
Q Consensus 6 ~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~ 46 (439)
++.|.+||+|||+++.+|++||+.++|||+.||+.||.+++
T Consensus 1 ~e~i~~F~~iTg~~~~~A~~~L~~~~wdle~Av~~y~~~~~ 41 (43)
T PF14555_consen 1 DEKIAQFMSITGADEDVAIQYLEANNWDLEAAVNAYFDDGE 41 (43)
T ss_dssp HHHHHHHHHHH-SSHHHHHHHHHHTTT-HHHHHHHHHHSS-
T ss_pred CHHHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 57899999999999999999999999999999999999876
No 3
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0045 Score=63.53 Aligned_cols=46 Identities=26% Similarity=0.341 Sum_probs=41.1
Q ss_pred cHHHHHHHHHhhC-CCHHHHHHHHHHhCCChHHHHHHhhhcCCccCC
Q 013613 5 TQETVDTFTSITG-ASQSVALQKLEEYGGNLNEAVNAYFSEGHRDIL 50 (439)
Q Consensus 5 ~~eaIqQFMsITG-ASeavA~qyLEeh~wdL~~AVNAYy~~~~R~~~ 50 (439)
..+.+.+||.||+ .+...|.+||+..+|||+.|||=||..+.-...
T Consensus 6 ~~~lv~~fl~It~~~t~e~A~q~L~~~~~~le~ai~Lffe~~~~~~~ 52 (356)
T KOG1364|consen 6 QRALVSKFLAITVQQTVEIATQYLSAADWDLEAAINLFFEHGGFTQV 52 (356)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHhcCCcHHHHHHHHHHhcccccc
Confidence 4566899999999 999999999999999999999999999885444
No 4
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=96.36 E-value=0.0026 Score=48.53 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhc
Q 013613 6 QETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSE 44 (439)
Q Consensus 6 ~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~ 44 (439)
++.|.+|+..||....=+.+.|++.+||++.|+..|-.-
T Consensus 1 q~mv~~~s~~Tgmn~~~s~~CL~~n~Wd~~~A~~~F~~l 39 (51)
T PF03943_consen 1 QEMVQQFSQQTGMNLEWSQKCLEENNWDYERALQNFEEL 39 (51)
T ss_dssp HHHHHHHHHHCSS-CCHHHHHHHHTTT-CCHHHHHHHHC
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 478999999999999999999999999999999999543
No 5
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=95.88 E-value=0.017 Score=40.62 Aligned_cols=35 Identities=29% Similarity=0.422 Sum_probs=31.6
Q ss_pred cHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHH
Q 013613 5 TQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNA 40 (439)
Q Consensus 5 ~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNA 40 (439)
+++.|++.|.. |.+...|++.|...+||++.||+-
T Consensus 2 ~~~~v~~L~~m-Gf~~~~~~~AL~~~~~nve~A~~~ 36 (37)
T PF00627_consen 2 DEEKVQQLMEM-GFSREQAREALRACNGNVERAVDW 36 (37)
T ss_dssp HHHHHHHHHHH-TS-HHHHHHHHHHTTTSHHHHHHH
T ss_pred CHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHh
Confidence 46889999999 999999999999999999999973
No 6
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=95.17 E-value=0.04 Score=44.12 Aligned_cols=39 Identities=23% Similarity=0.333 Sum_probs=35.9
Q ss_pred cHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhh
Q 013613 5 TQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFS 43 (439)
Q Consensus 5 ~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~ 43 (439)
+++.|.+|...||....=+.+.|+..+||++.|+..|-.
T Consensus 12 q~~~v~~~~~~Tgmn~~~s~~cLe~~~Wd~~~Al~~F~~ 50 (63)
T smart00804 12 QQEMVQAFSAQTGMNAEYSQMCLEDNNWDYERALKNFTE 50 (63)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 456789999999999999999999999999999999944
No 7
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=95.09 E-value=0.058 Score=37.40 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhh
Q 013613 6 QETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYF 42 (439)
Q Consensus 6 ~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy 42 (439)
++.|++++++ |.+...|++.|+..+||++.|++-.|
T Consensus 2 ~~~v~~L~~m-Gf~~~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 2 EEKLEQLLEM-GFSREEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence 4678899885 99999999999999999999998775
No 8
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=94.80 E-value=0.071 Score=36.85 Aligned_cols=36 Identities=28% Similarity=0.461 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhh
Q 013613 6 QETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYF 42 (439)
Q Consensus 6 ~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy 42 (439)
.+.|++++++ |.+...|++.|+..+||++.|++-.|
T Consensus 2 ~~~v~~L~~m-Gf~~~~a~~aL~~~~~d~~~A~~~L~ 37 (37)
T smart00165 2 EEKIDQLLEM-GFSREEALKALRAANGNVERAAEYLL 37 (37)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHC
Confidence 4678898887 99999999999999999999998653
No 9
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=92.98 E-value=0.18 Score=44.96 Aligned_cols=38 Identities=32% Similarity=0.413 Sum_probs=34.9
Q ss_pred CCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHH
Q 013613 3 RPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNA 40 (439)
Q Consensus 3 ~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNA 40 (439)
..+.+.|+-.|.=||+|...|++.|++++|||-.||-.
T Consensus 74 ~i~~edI~lv~~q~gvs~~~A~~AL~~~~gDl~~AI~~ 111 (115)
T PRK06369 74 EIPEEDIELVAEQTGVSEEEARKALEEANGDLAEAILK 111 (115)
T ss_pred CCCHHHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHH
Confidence 46788999999999999999999999999999999864
No 10
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=92.30 E-value=0.23 Score=44.86 Aligned_cols=38 Identities=32% Similarity=0.476 Sum_probs=34.6
Q ss_pred CCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHH
Q 013613 3 RPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNA 40 (439)
Q Consensus 3 ~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNA 40 (439)
..+.+.|.=.|.=||+|...|++.|+++||||-+||-.
T Consensus 82 ~i~eeDIkLV~eQa~VsreeA~kAL~e~~GDlaeAIm~ 119 (122)
T COG1308 82 DISEEDIKLVMEQAGVSREEAIKALEEAGGDLAEAIMK 119 (122)
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 36788899999999999999999999999999999864
No 11
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=92.12 E-value=0.25 Score=44.21 Aligned_cols=36 Identities=31% Similarity=0.432 Sum_probs=33.5
Q ss_pred CcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHH
Q 013613 4 PTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVN 39 (439)
Q Consensus 4 p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVN 39 (439)
.+.+.|+-.|.=||+|...|++.|++++|||-.||-
T Consensus 77 i~~eDI~lV~eq~gvs~e~A~~AL~~~~gDl~~AI~ 112 (116)
T TIGR00264 77 ITEDDIELVMKQCNVSKEEARRALEECGGDLAEAIM 112 (116)
T ss_pred CCHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHH
Confidence 577889999999999999999999999999988885
No 12
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=90.80 E-value=0.19 Score=41.70 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=18.6
Q ss_pred ceeEEEeeCCCceeeeeeee
Q 013613 413 SFGCLIYSPCSFVLKTTFLC 432 (439)
Q Consensus 413 s~~~~~~~p~~~~~~~~f~~ 432 (439)
+++|.|++|+|+||.|||..
T Consensus 4 ~~~I~iRlp~G~Rl~rrF~~ 23 (85)
T cd01774 4 TVKIVFKLPNGTRVERRFLF 23 (85)
T ss_pred eEEEEEECCCCCEEEEEeCC
Confidence 68999999999999999984
No 13
>smart00726 UIM Ubiquitin-interacting motif. Present in proteasome subunit S5a and other ubiquitin-associated proteins.
Probab=89.49 E-value=0.2 Score=34.11 Aligned_cols=19 Identities=42% Similarity=0.677 Sum_probs=14.7
Q ss_pred CchHHHHHhhhchhHHHHH
Q 013613 211 EDDEFSRAISLSLKTAEQE 229 (439)
Q Consensus 211 eDdDLakAIsLS~ee~E~e 229 (439)
||++|++||.||+.+.+..
T Consensus 2 EDe~Lq~Ai~lSl~e~e~~ 20 (26)
T smart00726 2 EDEDLQLALELSLQEAEES 20 (26)
T ss_pred hHHHHHHHHHHhHHHhhhc
Confidence 6777888888888877765
No 14
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=89.29 E-value=0.3 Score=40.17 Aligned_cols=20 Identities=20% Similarity=0.183 Sum_probs=18.2
Q ss_pred ceeEEEeeCCCceeeeeeee
Q 013613 413 SFGCLIYSPCSFVLKTTFLC 432 (439)
Q Consensus 413 s~~~~~~~p~~~~~~~~f~~ 432 (439)
.++|.|+||+|.|++|||+.
T Consensus 4 ~~~i~iRlP~G~r~~rrF~~ 23 (80)
T cd01771 4 ISKLRVRTPSGDFLERRFLG 23 (80)
T ss_pred eEEEEEECCCCCEEEEEeCC
Confidence 47899999999999999974
No 15
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]. In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.
Probab=87.44 E-value=0.58 Score=29.58 Aligned_cols=16 Identities=38% Similarity=0.410 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHhhhh
Q 013613 180 IEEQMIQAAIEASKQE 195 (439)
Q Consensus 180 iEeemiRaAIEASK~e 195 (439)
.||+++++||+.|..+
T Consensus 2 ~Ed~~L~~Al~~S~~e 17 (18)
T PF02809_consen 2 DEDEDLQRALEMSLEE 17 (18)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhhcc
Confidence 4566666666666553
No 16
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=86.44 E-value=0.53 Score=39.54 Aligned_cols=20 Identities=5% Similarity=-0.159 Sum_probs=17.7
Q ss_pred eeEEEeeCCCceeeeeeeee
Q 013613 414 FGCLIYSPCSFVLKTTFLCY 433 (439)
Q Consensus 414 ~~~~~~~p~~~~~~~~f~~~ 433 (439)
-+|.|++|+|+|++|||.+-
T Consensus 6 t~i~vRlP~G~r~~rrF~~~ 25 (82)
T cd01773 6 ARLMLRYPDGKREQIALPEQ 25 (82)
T ss_pred eEEEEECCCCCEEEEEeCCC
Confidence 47999999999999999853
No 17
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=86.04 E-value=0.28 Score=51.21 Aligned_cols=41 Identities=22% Similarity=0.165 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613 6 QETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH 46 (439)
Q Consensus 6 ~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~ 46 (439)
.+.|.+||.+||.|+..|+.||+..+||++.|...+|....
T Consensus 5 ~~~ls~f~~~t~~se~~~~~~l~s~~~d~~~a~~~~~~~~~ 45 (380)
T KOG2086|consen 5 LDSLSEFRAVTGPSESRARFYLESIYWDREAAHRSELEAFA 45 (380)
T ss_pred hhHHHHHhccCCCCccccccccccCCCchhhhhhhhccccc
Confidence 47899999999999999999999999999999988865543
No 18
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]. In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.
Probab=83.94 E-value=0.4 Score=30.28 Aligned_cols=16 Identities=38% Similarity=0.738 Sum_probs=14.1
Q ss_pred CCchHHHHHhhhchhH
Q 013613 210 PEDDEFSRAISLSLKT 225 (439)
Q Consensus 210 ~eDdDLakAIsLS~ee 225 (439)
.||++|++||.||+++
T Consensus 2 ~Ed~~L~~Al~~S~~e 17 (18)
T PF02809_consen 2 DEDEDLQRALEMSLEE 17 (18)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhhcc
Confidence 3688999999999986
No 19
>smart00726 UIM Ubiquitin-interacting motif. Present in proteasome subunit S5a and other ubiquitin-associated proteins.
Probab=83.58 E-value=0.95 Score=30.87 Aligned_cols=21 Identities=38% Similarity=0.371 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHhhhhhhcCC
Q 013613 180 IEEQMIQAAIEASKQEASSGS 200 (439)
Q Consensus 180 iEeemiRaAIEASK~eaee~~ 200 (439)
.||++|++||+.|..+++...
T Consensus 1 ~EDe~Lq~Ai~lSl~e~e~~~ 21 (26)
T smart00726 1 DEDEDLQLALELSLQEAEESX 21 (26)
T ss_pred ChHHHHHHHHHHhHHHhhhcc
Confidence 378999999999999887653
No 20
>PRK09377 tsf elongation factor Ts; Provisional
Probab=79.55 E-value=3.3 Score=41.78 Aligned_cols=45 Identities=24% Similarity=0.289 Sum_probs=40.1
Q ss_pred CCCCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcC
Q 013613 1 MTRPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEG 45 (439)
Q Consensus 1 ma~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~ 45 (439)
|...+.+.|.+....||+.--...+.|++++||++.|++-.=..|
T Consensus 1 m~~is~~~IK~LR~~Tgagm~dCKkAL~e~~gD~ekAi~~Lrk~G 45 (290)
T PRK09377 1 MAAITAALVKELRERTGAGMMDCKKALTEADGDIEKAIEWLRKKG 45 (290)
T ss_pred CCccCHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 566788999999999999999999999999999999998775444
No 21
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=78.48 E-value=3.7 Score=41.49 Aligned_cols=44 Identities=25% Similarity=0.327 Sum_probs=38.7
Q ss_pred CCCCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcC
Q 013613 1 MTRPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEG 45 (439)
Q Consensus 1 ma~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~ 45 (439)
|+ .+.+.|.+....||+.--...+.|++++||++.|++-.=..|
T Consensus 1 m~-isa~~IK~LRe~Tgagm~dCKkAL~e~~gDiekAi~~LRkkG 44 (290)
T TIGR00116 1 MA-ITAQLVKELRERTGAGMMDCKKALTEANGDFEKAIKNLRESG 44 (290)
T ss_pred CC-CCHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 55 677899999999999999999999999999999998764443
No 22
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=76.93 E-value=2.3 Score=33.77 Aligned_cols=19 Identities=21% Similarity=0.050 Sum_probs=17.1
Q ss_pred eeEEEeeCCCceeeeeeee
Q 013613 414 FGCLIYSPCSFVLKTTFLC 432 (439)
Q Consensus 414 ~~~~~~~p~~~~~~~~f~~ 432 (439)
.+|.|++|+|.++++||.-
T Consensus 3 t~i~iRlpdG~~~~~~F~~ 21 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNS 21 (77)
T ss_pred EEEEEEcCCCCEEEEEeCC
Confidence 5789999999999999963
No 23
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=74.46 E-value=2.8 Score=33.57 Aligned_cols=20 Identities=20% Similarity=0.037 Sum_probs=17.8
Q ss_pred ceeEEEeeCCCceeeeeeee
Q 013613 413 SFGCLIYSPCSFVLKTTFLC 432 (439)
Q Consensus 413 s~~~~~~~p~~~~~~~~f~~ 432 (439)
..+|.|++|+|.|+++||..
T Consensus 4 ~~~I~iRlPdG~ri~~~F~~ 23 (80)
T smart00166 4 QCRLQIRLPDGSRLVRRFPS 23 (80)
T ss_pred eEEEEEEcCCCCEEEEEeCC
Confidence 46799999999999999974
No 24
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=70.71 E-value=13 Score=37.34 Aligned_cols=28 Identities=18% Similarity=0.327 Sum_probs=18.9
Q ss_pred hHHHHHHHHHhhhHHHHHHHHhhHHHHH
Q 013613 356 SVMAQQSLREQQDDEYLASLLADREKEM 383 (439)
Q Consensus 356 s~~aq~~LR~qQDeaYlaSL~ADqEKe~ 383 (439)
.+.--..+|++..++++..-.+.+..++
T Consensus 256 ~~~K~~k~R~~~~~~~~K~~~~~r~E~~ 283 (321)
T PF07946_consen 256 AKKKAKKNREEEEEKILKEAHQERQEEA 283 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677898888888877655554443
No 25
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=70.39 E-value=8.5 Score=36.91 Aligned_cols=42 Identities=26% Similarity=0.320 Sum_probs=37.4
Q ss_pred CcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcC
Q 013613 4 PTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEG 45 (439)
Q Consensus 4 p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~ 45 (439)
.+.+.|.+....||++.-...+.|.+.+||++.|++-.=..|
T Consensus 3 i~a~~ik~LR~~tga~~~~ck~AL~~~~gd~~~A~~~lr~~g 44 (198)
T PRK12332 3 ITAKLVKELREKTGAGMMDCKKALEEANGDMEKAIEWLREKG 44 (198)
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 467889999999999999999999999999999998774443
No 26
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=70.29 E-value=3.8 Score=33.57 Aligned_cols=19 Identities=16% Similarity=-0.073 Sum_probs=17.2
Q ss_pred ceeEEEeeCCCceeeeeee
Q 013613 413 SFGCLIYSPCSFVLKTTFL 431 (439)
Q Consensus 413 s~~~~~~~p~~~~~~~~f~ 431 (439)
..+|.|++|+|.|+.+||.
T Consensus 4 ~t~iqiRlpdG~r~~~rF~ 22 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFN 22 (79)
T ss_pred eeEEEEECCCCCEEEEEeC
Confidence 3578999999999999997
No 27
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=69.70 E-value=5.1 Score=31.69 Aligned_cols=20 Identities=15% Similarity=0.029 Sum_probs=18.2
Q ss_pred ceeEEEeeCCCceeeeeeee
Q 013613 413 SFGCLIYSPCSFVLKTTFLC 432 (439)
Q Consensus 413 s~~~~~~~p~~~~~~~~f~~ 432 (439)
.+.|-|++|+|.++.|||..
T Consensus 6 ~~~I~vRlpdG~~l~~~F~~ 25 (82)
T PF00789_consen 6 VVRIQVRLPDGSRLQRRFPK 25 (82)
T ss_dssp EEEEEEEETTSTEEEEEEET
T ss_pred EEEEEEECCCCCEEEEEECC
Confidence 57899999999999999974
No 28
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=69.53 E-value=4.3 Score=32.90 Aligned_cols=20 Identities=25% Similarity=0.039 Sum_probs=17.8
Q ss_pred ceeEEEeeCCCceeeeeeee
Q 013613 413 SFGCLIYSPCSFVLKTTFLC 432 (439)
Q Consensus 413 s~~~~~~~p~~~~~~~~f~~ 432 (439)
..+|-|++|+|.|+++||.-
T Consensus 4 ~~~i~iRlp~G~~~~~~F~~ 23 (79)
T cd01772 4 ETRIQIRLLDGTTLKQTFKA 23 (79)
T ss_pred EEEEEEECCCCCEEEEEeCC
Confidence 36899999999999999974
No 29
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=68.38 E-value=9.6 Score=40.89 Aligned_cols=21 Identities=24% Similarity=0.107 Sum_probs=8.8
Q ss_pred HHHHHHhhCCCHHHHHHHHHH
Q 013613 9 VDTFTSITGASQSVALQKLEE 29 (439)
Q Consensus 9 IqQFMsITGASeavA~qyLEe 29 (439)
++.|++|+|..........++
T Consensus 4 ~d~~~~i~~~~~~~~~~~~e~ 24 (460)
T KOG1363|consen 4 WDLVEAIEGVLPQEDGALSEE 24 (460)
T ss_pred HhHHHHHhhcccccCcccccc
Confidence 344444444444433333333
No 30
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.33 E-value=1.9 Score=43.18 Aligned_cols=38 Identities=24% Similarity=0.347 Sum_probs=34.6
Q ss_pred cHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhh
Q 013613 5 TQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYF 42 (439)
Q Consensus 5 ~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy 42 (439)
+.+.+.+||.+|.++.++++++|...+|++..|.|.+|
T Consensus 8 ~~d~~~~~~~~~~~~~~~s~~~~~~~dw~~~~~~~~s~ 45 (260)
T KOG3077|consen 8 QKDKFEQFMSFTASRKKTSLSCLAACDWNLKYAFNDSY 45 (260)
T ss_pred HHHHHHhhcccccccchhhhhhhcccccccchhcccch
Confidence 45679999999999999999999999999999977666
No 31
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=68.22 E-value=9 Score=27.56 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=26.1
Q ss_pred hhCCCHHHHHHHHHHhCCChHHHHHHhhh
Q 013613 15 ITGASQSVALQKLEEYGGNLNEAVNAYFS 43 (439)
Q Consensus 15 ITGASeavA~qyLEeh~wdL~~AVNAYy~ 43 (439)
+=+.+..++.+-|++++||++.|||..+.
T Consensus 13 FP~l~~~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 13 FPNLDEEVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 36789999999999999999999999864
No 32
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=65.55 E-value=14 Score=42.83 Aligned_cols=34 Identities=26% Similarity=0.208 Sum_probs=17.7
Q ss_pred HHhhhHHHHHHHHhhH---HHHHHHHHHHHHHhhhhH
Q 013613 364 REQQDDEYLASLLADR---EKEMNALKEAESLQLSRD 397 (439)
Q Consensus 364 R~qQDeaYlaSL~ADq---EKe~k~~~e~E~~~~~ee 397 (439)
.+||-.+=++-|+.-| |+||++++..|.+|.++|
T Consensus 915 k~~q~~~e~er~rk~qE~~E~ER~rrEaeek~rre~e 951 (1259)
T KOG0163|consen 915 KEQQQIEELERLRKIQELAEAERKRREAEEKRRREEE 951 (1259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 3445555555554443 456666665555555533
No 33
>CHL00098 tsf elongation factor Ts
Probab=65.07 E-value=11 Score=36.31 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcC
Q 013613 6 QETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEG 45 (439)
Q Consensus 6 ~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~ 45 (439)
.+.|.+....||+.--...+.|.+.+||++.|++-.=..+
T Consensus 2 a~~ik~LR~~Tgag~~dck~AL~e~~gd~~~A~~~Lr~~g 41 (200)
T CHL00098 2 AELVKELRDKTGAGMMDCKKALQEANGDFEKALESLRQKG 41 (200)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 4679999999999999999999999999999998664433
No 34
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=64.74 E-value=3.9 Score=43.68 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=19.4
Q ss_pred CCchHHHHHhhhchhHHHHHHHh
Q 013613 210 PEDDEFSRAISLSLKTAEQEKTI 232 (439)
Q Consensus 210 ~eDdDLakAIsLS~ee~E~ek~l 232 (439)
.||+||+|||.||+.|.++.+-+
T Consensus 164 ~EeEdiaKAi~lSL~E~~~Q~k~ 186 (462)
T KOG2199|consen 164 QEEEDIAKAIELSLKEQEKQKKL 186 (462)
T ss_pred ccHHHHHHHHHhhHHHHhhchhh
Confidence 58899999999999999965443
No 35
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=64.55 E-value=11 Score=27.16 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=29.7
Q ss_pred HHHHHHHHHh-hCCCHHHHHHHHHHhCCChHHHHHHhhh
Q 013613 6 QETVDTFTSI-TGASQSVALQKLEEYGGNLNEAVNAYFS 43 (439)
Q Consensus 6 ~eaIqQFMsI-TGASeavA~qyLEeh~wdL~~AVNAYy~ 43 (439)
++.|++..++ =+.+..+-...|++++||++.|||+.+.
T Consensus 2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 2 EEMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 3456655554 5788999999999999999999999864
No 36
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=62.68 E-value=14 Score=38.01 Aligned_cols=44 Identities=25% Similarity=0.286 Sum_probs=39.9
Q ss_pred CCCCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhc
Q 013613 1 MTRPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSE 44 (439)
Q Consensus 1 ma~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~ 44 (439)
|+..+.+.|......|||.--...+.|.+.+||++.||+-.=..
T Consensus 1 m~~ita~~VKeLRe~TgAGMmdCKkAL~E~~Gd~EkAie~LR~k 44 (296)
T COG0264 1 MAEITAALVKELREKTGAGMMDCKKALEEANGDIEKAIEWLREK 44 (296)
T ss_pred CCcccHHHHHHHHHHhCCcHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 77888899999999999999999999999999999999866433
No 37
>KOG2935 consensus Ataxin 3/Josephin [General function prediction only]
Probab=58.02 E-value=23 Score=36.25 Aligned_cols=44 Identities=30% Similarity=0.444 Sum_probs=34.0
Q ss_pred ChHHHHHHHHHHHhhhhhhcCCCCcccccCCCCchHHHHHhhhchhHHHHHHHhhh
Q 013613 179 DIEEQMIQAAIEASKQEASSGSGVVQRELELPEDDEFSRAISLSLKTAEQEKTIRG 234 (439)
Q Consensus 179 DiEeemiRaAIEASK~eaee~~~~~q~~~~~~eDdDLakAIsLS~ee~E~ek~lr~ 234 (439)
|.+++.+..|++.|+++- ..+|+||..||.||....-....+-.
T Consensus 216 dq~e~d~a~a~a~s~~et------------~~ede~lrsaie~s~~~~~~a~~l~q 259 (315)
T KOG2935|consen 216 DQDEEDLARALALSRQET------------EMEDEDLRSAIELSMQSANAAQDLLQ 259 (315)
T ss_pred ccchHHHHHHHHHHHhhh------------hcccHHHHHHHHhhhhhhhhHHHhhc
Confidence 678889999999998753 46799999999999986554434433
No 38
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=55.43 E-value=91 Score=29.48 Aligned_cols=45 Identities=16% Similarity=0.115 Sum_probs=32.7
Q ss_pred CCCCchHHHHHHHHHhhhHHHHHHHHh-hHHHHHHHHHHHHHHhhh
Q 013613 351 SRASSSVMAQQSLREQQDDEYLASLLA-DREKEMNALKEAESLQLS 395 (439)
Q Consensus 351 ~~psps~~aq~~LR~qQDeaYlaSL~A-DqEKe~k~~~e~E~~~~~ 395 (439)
.+-.|.-.+.+..|.+...+|...+.+ -.||.+++.++.+.++.+
T Consensus 39 allDpa~~eEre~rR~kq~E~q~ai~~QieEk~r~k~~E~err~~E 84 (157)
T PF15236_consen 39 ALLDPAQIEERERRRQKQLEHQRAIKQQIEEKRRQKQEEEERRRRE 84 (157)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777888888888888877665 467777777776666655
No 39
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=53.02 E-value=46 Score=32.04 Aligned_cols=19 Identities=11% Similarity=0.010 Sum_probs=8.6
Q ss_pred hhhHHHHHHHHHHHHHhhh
Q 013613 394 LSRDESQKKILEEEVVKLL 412 (439)
Q Consensus 394 ~~eee~~~k~~ee~~~k~~ 412 (439)
++|||+|++.+|.-+.+.+
T Consensus 109 q~EEEKRrqkie~we~~q~ 127 (190)
T PF06936_consen 109 QEEEEKRRQKIEMWESMQE 127 (190)
T ss_dssp HHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3355555555555555544
No 40
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.83 E-value=41 Score=39.18 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=14.7
Q ss_pred CCCchhhhhHHH-HHHHHHhcc
Q 013613 306 GGISSKELDEAV-MLEAALFGE 326 (439)
Q Consensus 306 GGIss~e~dea~-mleaamfgg 326 (439)
|-++.+|+==|+ |.|-||-|-
T Consensus 244 GkL~~dEfilam~liema~sGq 265 (1118)
T KOG1029|consen 244 GKLSADEFILAMHLIEMAKSGQ 265 (1118)
T ss_pred CcccHHHHHHHHHHHHHHhcCC
Confidence 567777776664 668888773
No 41
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=43.67 E-value=32 Score=34.37 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=29.9
Q ss_pred HHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhh
Q 013613 9 VDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFS 43 (439)
Q Consensus 9 IqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~ 43 (439)
+.=.|.+||+|...|.+.|++.+|++-.||--...
T Consensus 239 ~~i~~~~~~~~~~~a~~~l~~~~~~vk~a~~~~~~ 273 (299)
T PRK05441 239 VRIVMEATGVSREEAEAALEAADGSVKLAIVMILT 273 (299)
T ss_pred HHHHHHHHCcCHHHHHHHHHHhCCCcHHHHHHHHh
Confidence 44478899999999999999999999999876544
No 42
>KOG1071 consensus Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt [Translation, ribosomal structure and biogenesis]
Probab=40.14 E-value=42 Score=35.17 Aligned_cols=35 Identities=31% Similarity=0.377 Sum_probs=31.9
Q ss_pred cHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHH
Q 013613 5 TQETVDTFTSITGASQSVALQKLEEYGGNLNEAVN 39 (439)
Q Consensus 5 ~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVN 39 (439)
+.+.|.+...=||+|-..-.+.|+++||||..|..
T Consensus 46 ~~allk~LR~kTgas~~ncKkALee~~gDl~~A~~ 80 (340)
T KOG1071|consen 46 SKALLKKLREKTGASMVNCKKALEECGGDLVLAEE 80 (340)
T ss_pred cHHHHHHHHHHcCCcHHHHHHHHHHhCCcHHHHHH
Confidence 46889999999999999999999999999988764
No 43
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.45 E-value=94 Score=31.96 Aligned_cols=37 Identities=24% Similarity=0.138 Sum_probs=19.8
Q ss_pred HHhhHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHhh
Q 013613 375 LLADREKEMNALKEAESLQLS--RDESQKKILEEEVVKL 411 (439)
Q Consensus 375 L~ADqEKe~k~~~e~E~~~~~--eee~~~k~~ee~~~k~ 411 (439)
+.+-.|.++|+.+++.+.+.+ ++|+.||..||+++|-
T Consensus 134 ke~~eE~erKkdEeR~~eEae~k~ee~~RkakEE~arke 172 (299)
T KOG3054|consen 134 KEDYEEAERKKDEERLAEEAELKEEEKERKAKEEEARKE 172 (299)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344455566666654444333 4555666666666553
No 44
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=38.32 E-value=28 Score=34.54 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=18.3
Q ss_pred chHHHHHhhhchhHHH-HHHHhhh
Q 013613 212 DDEFSRAISLSLKTAE-QEKTIRG 234 (439)
Q Consensus 212 DdDLakAIsLS~ee~E-~ek~lr~ 234 (439)
|.+||.|+.||.+|+. |.+.++.
T Consensus 207 DpELA~AlrLSmeEek~rQe~~~q 230 (243)
T COG5148 207 DPELAEALRLSMEEEKKRQEVAAQ 230 (243)
T ss_pred CHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8999999999999887 4445554
No 45
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.44 E-value=1e+02 Score=36.12 Aligned_cols=26 Identities=12% Similarity=0.098 Sum_probs=14.5
Q ss_pred CCcccchhhhhhhcCCCCCCCChhhhhh
Q 013613 77 RPSRLSQLFSAARSFRPSSLLDPNYRRS 104 (439)
Q Consensus 77 ~~~~~~~~~~aa~~~~Pf~LLDP~f~r~ 104 (439)
++..+|+++..-..+ .+++-|+|+++
T Consensus 88 P~~LPPsll~~~~~~--~p~~~p~fg~G 113 (1118)
T KOG1029|consen 88 PPVLPPSLLKQPPRN--APSTWPGFGMG 113 (1118)
T ss_pred CCCCChHHhccCCcC--CCCCCCccCCC
Confidence 345555455544443 34567888775
No 46
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=36.19 E-value=51 Score=37.70 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=10.7
Q ss_pred HHHhhHHHHHHHHHHHHHHhhh
Q 013613 374 SLLADREKEMNALKEAESLQLS 395 (439)
Q Consensus 374 SL~ADqEKe~k~~~e~E~~~~~ 395 (439)
-|.-|++|+.++.+.+|.++..
T Consensus 300 Klekd~KKqqkekEkeEKrrKd 321 (811)
T KOG4364|consen 300 KLEKDIKKQQKEKEKEEKRRKD 321 (811)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 3445555555554444444444
No 47
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=35.90 E-value=50 Score=33.09 Aligned_cols=35 Identities=23% Similarity=0.188 Sum_probs=28.8
Q ss_pred HHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhh
Q 013613 9 VDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFS 43 (439)
Q Consensus 9 IqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~ 43 (439)
+.=.|.+||+|...|.+.|++.+|++-.||--...
T Consensus 234 ~~i~~~~~~~~~~~a~~~l~~~~~~vk~Ai~~~~~ 268 (291)
T TIGR00274 234 VRIVRQATDCNKELAEQTLLAADQNVKLAIVMILS 268 (291)
T ss_pred HHHHHHHhCcCHHHHHHHHHHhCCCcHHHHHHHHh
Confidence 44478889999999999999999999888875533
No 48
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=34.85 E-value=52 Score=32.99 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=29.3
Q ss_pred HHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhh
Q 013613 9 VDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFS 43 (439)
Q Consensus 9 IqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~ 43 (439)
+.=.+.+||+|...|.+.|++.+|++-.||--...
T Consensus 235 ~~i~~~~~~~~~~~a~~~l~~~~~~vk~ai~~~~~ 269 (296)
T PRK12570 235 VRIVMQATGCSEDEAKELLKESDNDVKLAILMILT 269 (296)
T ss_pred HHHHHHHHCcCHHHHHHHHHHhCCccHHHHHHHHh
Confidence 44578889999999999999999999999875533
No 49
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.83 E-value=1.9e+02 Score=29.95 Aligned_cols=18 Identities=28% Similarity=0.150 Sum_probs=15.2
Q ss_pred eeEEEeeCCCceeeeeee
Q 013613 414 FGCLIYSPCSFVLKTTFL 431 (439)
Q Consensus 414 ~~~~~~~p~~~~~~~~f~ 431 (439)
-.|-|+||+|..|+-+|-
T Consensus 211 crlQiRl~DG~Tl~~tF~ 228 (290)
T KOG2689|consen 211 CRLQIRLPDGQTLTQTFN 228 (290)
T ss_pred eEEEEEcCCCCeeeeecC
Confidence 457789999999999984
No 50
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.71 E-value=1.7e+02 Score=30.38 Aligned_cols=37 Identities=16% Similarity=0.155 Sum_probs=16.9
Q ss_pred HHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHH
Q 013613 362 SLREQQDDEYLASLLADREKEMNALKEAESLQLSRDES 399 (439)
Q Consensus 362 ~LR~qQDeaYlaSL~ADqEKe~k~~~e~E~~~~~eee~ 399 (439)
..|..|++++++..+. .|+++++++..++++.+++|+
T Consensus 137 ~~~~~~e~~~~~~~~~-~E~~~~~~rr~~~~~~e~ee~ 173 (309)
T TIGR00570 137 KEKSTREQEELEEALE-FEKEEEEQRRLLLQKEEEEQQ 173 (309)
T ss_pred HHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666553 333333333333333333333
No 51
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=32.35 E-value=28 Score=36.20 Aligned_cols=38 Identities=26% Similarity=0.362 Sum_probs=33.9
Q ss_pred HHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613 9 VDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH 46 (439)
Q Consensus 9 IqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~ 46 (439)
.-.|-.+|.+.++.|+.+|-...|++..|+|.||....
T Consensus 29 l~efa~~~s~dea~aq~~l~~~dw~~~ral~~~~~se~ 66 (349)
T KOG2756|consen 29 CVEFASVASCDAAVAQCFLAENDWEMERALNSYFEPET 66 (349)
T ss_pred HHHHHHhhhhHHHhHHHHhhcchhHHHHHHHhhcCcee
Confidence 34688899999999999999999999999999998553
No 52
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=32.02 E-value=1.5e+02 Score=30.38 Aligned_cols=48 Identities=29% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 013613 361 QSLREQQDDEYLASLLADREKEMNALKEAESLQLSRDESQKKILEEEVVK 410 (439)
Q Consensus 361 ~~LR~qQDeaYlaSL~ADqEKe~k~~~e~E~~~~~eee~~~k~~ee~~~k 410 (439)
..||+||+ ...-+++..-.+.++.+++|.++.+|.++|.++..+...+
T Consensus 156 ~~lr~~q~--~fe~~R~aEl~e~qrlE~~e~r~~eEkerR~~q~~~~~~~ 203 (291)
T PF06098_consen 156 AALRRQQR--AFEELRNAELAEVQRLEEAEKRRREEKERRIKQQKERLEK 203 (291)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 53
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=31.99 E-value=1.3e+02 Score=24.74 Aligned_cols=39 Identities=31% Similarity=0.407 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhCC-CHHHHHHHHHHhCCChHHHHHHhhhc
Q 013613 6 QETVDTFTSITGA-SQSVALQKLEEYGGNLNEAVNAYFSE 44 (439)
Q Consensus 6 ~eaIqQFMsITGA-SeavA~qyLEeh~wdL~~AVNAYy~~ 44 (439)
+..||..-.|||+ |+..--..|.+++.|-|+|++-.++.
T Consensus 6 rk~VQ~iKEiv~~hse~eIya~L~ecnMDpnea~qrLL~q 45 (60)
T PF06972_consen 6 RKTVQSIKEIVGCHSEEEIYAMLKECNMDPNEAVQRLLSQ 45 (60)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 5668888899999 99999999999999999999987664
No 54
>PF04221 RelB: RelB antitoxin; InterPro: IPR007337 Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. Several toxin/antitoxin pairs may occur in a single species. RelE and RelB form a toxin-antitoxin system; RelE represses translation, probably through binding ribosomes [, ]. RelB stably binds RelE, presumably deactivating it.; PDB: 2KC8_B 2K29_A.
Probab=28.26 E-value=56 Score=26.77 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=21.2
Q ss_pred HHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613 21 SVALQKLEEYGGNLNEAVNAYFSEGH 46 (439)
Q Consensus 21 avA~qyLEeh~wdL~~AVNAYy~~~~ 46 (439)
..|...|+++|-++..|||.||...-
T Consensus 14 ~~a~~il~~~Glt~s~ai~~fl~qiv 39 (83)
T PF04221_consen 14 EEAEAILEELGLTLSDAINMFLKQIV 39 (83)
T ss_dssp HHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45889999999999999999998765
No 55
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=27.89 E-value=91 Score=36.57 Aligned_cols=10 Identities=30% Similarity=0.162 Sum_probs=5.1
Q ss_pred HHHHhhhhhh
Q 013613 188 AIEASKQEAS 197 (439)
Q Consensus 188 AIEASK~eae 197 (439)
+|.||..+.+
T Consensus 114 kllas~~ek~ 123 (1064)
T KOG1144|consen 114 KLLASLGEKD 123 (1064)
T ss_pred HHhhhcCCCC
Confidence 4555555443
No 56
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=27.09 E-value=46 Score=24.91 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=17.2
Q ss_pred HhhCCCHHHHHHHHHHhCCC
Q 013613 14 SITGASQSVALQKLEEYGGN 33 (439)
Q Consensus 14 sITGASeavA~qyLEeh~wd 33 (439)
.++|.+...|.+.|++.||.
T Consensus 5 d~~g~~~~~a~~~l~~~g~~ 24 (63)
T PF03793_consen 5 DLVGMTYDEAKSILEAAGLT 24 (63)
T ss_dssp TTTTSBHHHHHHHHHHTT-E
T ss_pred CcCCCcHHHHHHHHHHCCCE
Confidence 47999999999999999973
No 57
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=27.05 E-value=59 Score=25.96 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=31.0
Q ss_pred cHHHHHHHH-HhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613 5 TQETVDTFT-SITGASQSVALQKLEEYGGNLNEAVNAYFSEGH 46 (439)
Q Consensus 5 ~~eaIqQFM-sITGASeavA~qyLEeh~wdL~~AVNAYy~~~~ 46 (439)
..+.|.|-- -+-|-|..+-++-|...+.|+|.|||..++..|
T Consensus 9 PedlI~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsRDd 51 (53)
T PF11547_consen 9 PEDLINQAQVVLQGKSRNVIIRELQRTNLDVNLAVNNLLSRDD 51 (53)
T ss_dssp -HHHHHHHHHHSTTS-HHHHHHHHHHTTT-HHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHcCCcHHHHHHHHHHhcccHHHHHHHHhcccc
Confidence 455666543 357999999999999999999999999876543
No 58
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=26.56 E-value=1.1e+02 Score=34.29 Aligned_cols=37 Identities=19% Similarity=0.106 Sum_probs=18.2
Q ss_pred HHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHhhhhHH
Q 013613 362 SLREQQDDEYLASLLADREKEMNALKEAESLQLSRDE 398 (439)
Q Consensus 362 ~LR~qQDeaYlaSL~ADqEKe~k~~~e~E~~~~~eee 398 (439)
+|-.||..|--+-++..|-...+.++..|++|+.|||
T Consensus 396 llekqqrraeear~rkqqleae~e~kreearrkaeee 432 (708)
T KOG3654|consen 396 LLEKQQRRAEEARRRKQQLEAEKEQKREEARRKAEEE 432 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Confidence 4555676666666665543333333333444444333
No 59
>KOG3228 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.04 E-value=1.8e+02 Score=29.11 Aligned_cols=62 Identities=26% Similarity=0.270 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhh--h-ceeEEEeeCC-Cceeeeeee
Q 013613 366 QQDDEYLASLLADREKEMNALKEAESLQLSRDESQKKILEEEVVKL--L-SFGCLIYSPC-SFVLKTTFL 431 (439)
Q Consensus 366 qQDeaYlaSL~ADqEKe~k~~~e~E~~~~~eee~~~k~~ee~~~k~--~-s~~~~~~~p~-~~~~~~~f~ 431 (439)
.-|+.=.+.|.|-++|-.+.+.+.++++. +| ++.+|++.++- + ---||-+-|. +|.|+||+-
T Consensus 122 esDeDdt~aLlaele~ikkERaee~~~~e--~e--~k~~e~r~r~e~il~Gnplln~~~s~~f~vKRRWD 187 (226)
T KOG3228|consen 122 ESDEDDTQALLAELENIKKERAEEQARKE--EE--QKAEEERIRMENILFGNPLLNKEPSSSFKVKRRWD 187 (226)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHH--HH--hhhHHHHHHHHhhhcCCccccCCCcccceeecccc
Confidence 44666677788877775554444333331 11 22222222222 2 2234444443 488999863
No 60
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=24.25 E-value=88 Score=24.13 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=19.5
Q ss_pred HHHHHHhhCCCHHHHHHHHHHhC
Q 013613 9 VDTFTSITGASQSVALQKLEEYG 31 (439)
Q Consensus 9 IqQFMsITGASeavA~qyLEeh~ 31 (439)
+.+|-.++|.|.+.|+.+||-++
T Consensus 13 v~~~rd~lg~sRK~ai~lLE~lD 35 (50)
T PF09107_consen 13 VAEFRDLLGLSRKYAIPLLEYLD 35 (50)
T ss_dssp HHHHHHHHTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHCccHHHHHHHHHHHh
Confidence 77899999999999999998653
No 61
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=22.51 E-value=1.1e+02 Score=31.69 Aligned_cols=35 Identities=34% Similarity=0.378 Sum_probs=26.3
Q ss_pred HHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhh
Q 013613 8 TVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYF 42 (439)
Q Consensus 8 aIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy 42 (439)
++.=.|.+||++...|.++|++.++++--||-=.+
T Consensus 236 a~RIv~~aT~~~~~~A~~~L~~~~~~vK~AIvm~~ 270 (298)
T COG2103 236 AVRIVMEATGCSAEEAEALLEEAGGNVKLAIVMLL 270 (298)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCccHhHHHHHH
Confidence 34556778888888888888888888877776553
No 62
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.51 E-value=1.7e+02 Score=30.27 Aligned_cols=9 Identities=33% Similarity=0.781 Sum_probs=4.2
Q ss_pred eeeeeeecc
Q 013613 428 TTFLCYLKT 436 (439)
Q Consensus 428 ~~f~~~~~~ 436 (439)
+-|..|+|+
T Consensus 203 ~eFv~YIk~ 211 (299)
T KOG3054|consen 203 SEFVEYIKK 211 (299)
T ss_pred HHHHHHHHh
Confidence 345555544
No 63
>KOG3450 consensus Huntingtin interacting protein HYPK [General function prediction only]
Probab=21.44 E-value=1.4e+02 Score=27.20 Aligned_cols=40 Identities=25% Similarity=0.242 Sum_probs=33.3
Q ss_pred CcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhh
Q 013613 4 PTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFS 43 (439)
Q Consensus 4 p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~ 43 (439)
...+.|+=.|+=--.+.++|.+.|.+|.||+-+|+.+..+
T Consensus 79 IkkeDlelImnELei~k~~aer~LrE~~Gdvv~Alral~s 118 (119)
T KOG3450|consen 79 IKKEDLELIMNELEISKAAAERSLREHMGDVVEALRALTS 118 (119)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhc
Confidence 3456677778878889999999999999999999987643
No 64
>PLN03086 PRLI-interacting factor K; Provisional
Probab=21.30 E-value=3.2e+02 Score=30.62 Aligned_cols=37 Identities=27% Similarity=0.229 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHhhh
Q 013613 357 VMAQQSLREQQDDEYLASLLADREKEMNALKEAESLQLS 395 (439)
Q Consensus 357 ~~aq~~LR~qQDeaYlaSL~ADqEKe~k~~~e~E~~~~~ 395 (439)
..++.+.|+|-..+-.|-|+. |+|||+++++.++|.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 43 (567)
T PLN03086 7 RAREKLEREQRERKQRAKLKL--ERERKAKEEAAKQREA 43 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 356777887777766666665 4555665555555444
No 65
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.19 E-value=1.3e+02 Score=32.28 Aligned_cols=12 Identities=25% Similarity=0.279 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhh
Q 013613 182 EQMIQAAIEASK 193 (439)
Q Consensus 182 eemiRaAIEASK 193 (439)
++-||+|+--=|
T Consensus 33 eElY~LA~~fyK 44 (469)
T KOG3878|consen 33 EELYRLAFTFYK 44 (469)
T ss_pred HHHHHHHHHHHH
Confidence 567888888777
No 66
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=21.05 E-value=2.9e+02 Score=33.01 Aligned_cols=9 Identities=33% Similarity=0.682 Sum_probs=4.1
Q ss_pred cCCCchhhh
Q 013613 305 WGGISSKEL 313 (439)
Q Consensus 305 WGGIss~e~ 313 (439)
|||--++|.
T Consensus 426 ~g~r~eke~ 434 (1021)
T PTZ00266 426 YGGRVDKDH 434 (1021)
T ss_pred cccccchhH
Confidence 444444443
No 67
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=20.65 E-value=6e+02 Score=27.25 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=10.8
Q ss_pred CCchHHHHHHHHHhhhH
Q 013613 353 ASSSVMAQQSLREQQDD 369 (439)
Q Consensus 353 psps~~aq~~LR~qQDe 369 (439)
.-|+.++++-=|.||..
T Consensus 55 vD~~~v~~q~~~~q~q~ 71 (387)
T PRK09510 55 VDPGAVVEQYNRQQQQQ 71 (387)
T ss_pred cChHHHHHHHHHHHHhH
Confidence 36788888766655443
No 68
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=20.26 E-value=2.8e+02 Score=30.13 Aligned_cols=30 Identities=30% Similarity=0.201 Sum_probs=23.7
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHhhh
Q 013613 366 QQDDEYLASLLADREKEMNALKEAESLQLS 395 (439)
Q Consensus 366 qQDeaYlaSL~ADqEKe~k~~~e~E~~~~~ 395 (439)
-|..+--.+|+|-||...|+.+|+.++..+
T Consensus 306 rQKle~e~~l~a~qeakek~~KEAqareak 335 (442)
T PF06637_consen 306 RQKLEAEQGLQASQEAKEKAGKEAQAREAK 335 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888889999999888888887666555
Done!