Query 013613
Match_columns 439
No_of_seqs 112 out of 120
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 13:51:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013613.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013613hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v92_A NSFL1 cofactor P47; 3-h 99.2 6.1E-12 2.1E-16 90.0 5.1 45 1-46 2-46 (46)
2 2dal_A Protein KIAA0794; FAS a 99.0 1.5E-10 5.1E-15 89.2 5.1 43 4-46 14-56 (62)
3 2dzl_A Protein FAM100B; UBA-li 99.0 1E-10 3.4E-15 91.7 3.9 40 7-46 19-58 (66)
4 2dam_A ETEA protein; KIAA0887, 99.0 3.4E-10 1.2E-14 88.7 5.3 42 5-46 18-60 (67)
5 3e21_A HFAF1, FAS-associated f 98.8 4.3E-09 1.5E-13 77.8 3.7 39 5-43 5-44 (45)
6 3bq3_A Defective in cullin ned 98.6 1.4E-08 4.9E-13 97.6 3.8 46 2-47 12-57 (270)
7 1z96_A DNA-damage, UBA-domain 97.1 0.00062 2.1E-08 46.8 5.0 36 6-42 5-40 (40)
8 1wj7_A Hypothetical protein (R 97.1 0.00058 2E-08 58.4 5.7 41 6-46 40-80 (104)
9 4gew_A 5'-tyrosyl-DNA phosphod 97.0 0.00033 1.1E-08 67.4 3.7 39 6-44 46-84 (362)
10 1q0v_A Hydrophilic protein; ha 96.4 0.0056 1.9E-07 50.5 5.9 57 178-234 8-77 (81)
11 2g3q_A Protein YBL047C; endocy 96.2 0.0066 2.3E-07 42.9 4.9 41 3-44 2-42 (43)
12 1veg_A NEDD8 ultimate buster-1 96.1 0.01 3.4E-07 48.8 6.0 43 3-46 27-69 (83)
13 1oai_A Nuclear RNA export fact 95.9 0.011 3.6E-07 45.5 5.2 39 5-43 7-45 (59)
14 1vg5_A RSGI RUH-014, rhomboid 95.8 0.013 4.6E-07 46.8 5.6 42 4-46 28-69 (73)
15 2jp7_A MRNA export factor MEX6 95.4 0.019 6.4E-07 44.1 4.9 40 5-44 6-45 (57)
16 2dak_A Ubiquitin carboxyl-term 95.2 0.034 1.2E-06 42.5 5.6 44 2-46 6-49 (63)
17 1ify_A HHR23A, UV excision rep 95.2 0.016 5.6E-07 42.5 3.7 39 5-44 8-46 (49)
18 1wiv_A UBP14, ubiquitin-specif 95.2 0.048 1.6E-06 43.2 6.6 43 3-46 27-69 (73)
19 1wji_A Tudor domain containing 95.1 0.036 1.2E-06 42.9 5.5 43 3-46 7-49 (63)
20 2dkl_A Trinucleotide repeat co 94.5 0.047 1.6E-06 44.6 5.2 42 4-46 20-61 (85)
21 2jy5_A Ubiquilin-1; UBA, alter 94.5 0.069 2.3E-06 39.7 5.5 38 6-44 13-51 (52)
22 1dv0_A DNA repair protein HHR2 94.4 0.017 5.8E-07 42.3 2.1 41 5-46 4-44 (47)
23 2knz_A Ubiquilin-4; cytoplasm, 94.4 0.067 2.3E-06 39.8 5.3 38 7-45 13-51 (53)
24 2dah_A Ubiquilin-3; UBA domain 94.4 0.057 2E-06 40.6 4.9 41 6-47 10-51 (54)
25 2l2d_A OTU domain-containing p 94.2 0.078 2.7E-06 42.7 5.6 43 5-49 17-59 (73)
26 2cpw_A CBL-interacting protein 94.0 0.071 2.4E-06 41.2 4.9 42 4-46 18-60 (64)
27 2dai_A Ubadc1, ubiquitin assoc 93.9 0.15 5.1E-06 41.4 6.8 43 3-46 27-69 (83)
28 2cp9_A EF-TS, EF-TSMT, elongat 93.9 0.08 2.7E-06 41.7 5.0 39 3-41 7-45 (64)
29 1whc_A RSGI RUH-027, UBA/UBX 3 93.1 0.11 3.7E-06 40.1 4.5 43 3-46 7-50 (64)
30 2ekk_A UBA domain from E3 ubiq 93.0 0.18 6.1E-06 36.2 5.3 40 3-44 7-46 (47)
31 2dag_A Ubiquitin carboxyl-term 92.8 0.21 7E-06 39.6 5.9 43 3-46 7-50 (74)
32 1tr8_A Conserved protein (MTH1 92.7 0.16 5.5E-06 42.8 5.4 37 3-39 63-99 (102)
33 1vek_A UBP14, ubiquitin-specif 92.3 0.23 7.7E-06 40.3 5.7 43 3-46 27-70 (84)
34 1vej_A Riken cDNA 4931431F19; 92.1 0.27 9.3E-06 39.5 5.8 40 6-46 30-70 (74)
35 2lbc_A Ubiquitin carboxyl-term 90.9 0.43 1.5E-05 40.3 6.1 42 4-46 77-118 (126)
36 2bwb_A Ubiquitin-like protein 90.7 0.49 1.7E-05 34.4 5.4 37 6-43 8-45 (46)
37 1wr1_B Ubiquitin-like protein 90.6 0.52 1.8E-05 36.0 5.7 39 6-45 18-57 (58)
38 2crn_A Ubash3A protein; compac 90.4 0.49 1.7E-05 36.6 5.5 43 3-46 7-50 (64)
39 1wgn_A UBAP1, ubiquitin associ 90.3 0.39 1.3E-05 38.1 4.9 41 6-47 20-60 (63)
40 2klz_A Ataxin-3; UIM, ubiquiti 89.1 0.25 8.5E-06 37.8 2.8 33 179-223 4-38 (52)
41 2cwb_A Chimera of immunoglobul 85.0 1.3 4.5E-05 37.8 5.4 41 6-46 67-107 (108)
42 2ooa_A E3 ubiquitin-protein li 85.0 1.4 4.8E-05 33.8 5.0 37 4-41 10-46 (52)
43 2d9s_A CBL E3 ubiquitin protei 82.0 2.6 8.9E-05 32.4 5.4 39 3-42 7-45 (53)
44 2dna_A Unnamed protein product 81.5 3 0.0001 33.0 5.8 40 7-46 21-60 (67)
45 1q0v_A Hydrophilic protein; ha 80.6 0.55 1.9E-05 38.7 1.3 24 178-201 51-74 (81)
46 2cr5_A Reproduction 8; UBX dom 79.5 1.1 3.8E-05 37.0 2.8 21 413-433 23-43 (109)
47 1wgl_A TOLL-interacting protei 78.1 2.8 9.7E-05 32.0 4.5 44 3-46 7-51 (59)
48 4ae4_A Ubiquitin-associated pr 71.1 5.3 0.00018 34.1 5.0 39 7-46 78-116 (118)
49 3a1q_C Ubiquitin interaction m 71.1 0.72 2.5E-05 34.2 -0.4 40 180-224 5-44 (45)
50 2rr9_C Putative uncharacterize 70.9 0.62 2.1E-05 34.7 -0.7 40 180-224 2-41 (46)
51 2cp8_A NEXT to BRCA1 gene 1 pr 69.0 6.2 0.00021 30.2 4.4 39 8-46 12-50 (54)
52 3qx1_A FAS-associated factor 1 67.6 3.2 0.00011 32.3 2.7 20 413-432 7-26 (84)
53 1wj4_A KIAA0794 protein; UBX d 67.1 3.1 0.00011 35.4 2.7 21 413-433 43-63 (124)
54 1xb2_B EF-TS, elongation facto 64.4 5.6 0.00019 38.7 4.2 40 4-43 3-42 (291)
55 1otr_A Protein CUE2; protein-p 62.4 14 0.00048 27.5 5.1 39 7-45 6-45 (49)
56 1aip_C EF-TS, elongation facto 62.3 8.7 0.0003 35.8 4.9 36 6-41 4-39 (196)
57 2dzk_A UBX domain-containing p 62.2 4.7 0.00016 33.4 2.8 21 413-433 13-33 (109)
58 2juj_A E3 ubiquitin-protein li 56.3 12 0.0004 29.1 3.9 40 4-44 6-45 (56)
59 1oqy_A HHR23A, UV excision rep 55.1 8.1 0.00028 38.5 3.6 41 4-45 167-207 (368)
60 1s3s_G P47 protein; AAA ATPase 52.4 6.3 0.00022 33.5 2.1 21 413-433 52-72 (127)
61 2dhy_A CUE domain-containing p 47.6 37 0.0013 26.6 5.5 40 4-43 17-57 (67)
62 4ae4_A Ubiquitin-associated pr 46.0 23 0.00079 30.2 4.5 41 4-45 7-47 (118)
63 2qho_B E3 ubiquitin-protein li 36.0 35 0.0012 26.1 3.6 42 5-46 9-51 (53)
64 1vdl_A Ubiquitin carboxyl-term 34.8 47 0.0016 27.4 4.4 34 8-41 27-61 (80)
65 2d3g_P Ubiquitin interacting m 34.3 23 0.00077 23.9 2.0 18 181-198 3-20 (26)
66 2lbc_A Ubiquitin carboxyl-term 30.1 52 0.0018 27.5 4.2 42 4-46 2-44 (126)
67 2oo9_A E3 ubiquitin-protein li 28.2 90 0.0031 23.4 4.6 36 6-42 5-40 (46)
68 1l6x_B Minimized B-domain of p 25.5 21 0.00071 25.4 0.8 16 363-378 18-33 (34)
69 1yx4_A 26S proteasome non-ATPa 24.9 39 0.0013 30.0 2.6 18 210-227 37-54 (132)
70 1ufz_A Hypothetical protein BA 24.2 97 0.0033 25.6 4.6 38 9-46 38-77 (83)
71 3avx_A Elongation factor TS, e 22.8 9.9 0.00034 43.9 -2.0 41 1-41 1-41 (1289)
72 2qeu_A Putative carboxymuconol 22.6 38 0.0013 28.5 2.0 23 306-329 95-117 (141)
73 2lva_A Ubiquitin carboxyl-term 28.2 18 0.00062 32.0 0.0 34 8-41 21-55 (129)
74 2lva_A Ubiquitin carboxyl-term 27.8 19 0.00064 32.0 0.0 19 210-228 94-112 (129)
75 2di0_A Activating signal coint 21.6 65 0.0022 25.8 3.0 28 17-44 26-53 (71)
76 3k6g_A Telomeric repeat-bindin 21.2 1.5E+02 0.005 25.7 5.3 42 6-48 14-55 (111)
77 4b4t_W RPN10, 26S proteasome r 20.6 21 0.00072 34.1 0.0 18 210-227 223-240 (268)
78 3ihp_A Ubiquitin carboxyl-term 20.1 75 0.0026 34.6 4.1 42 4-46 719-760 (854)
No 1
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=99.25 E-value=6.1e-12 Score=90.03 Aligned_cols=45 Identities=27% Similarity=0.445 Sum_probs=40.9
Q ss_pred CCCCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613 1 MTRPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH 46 (439)
Q Consensus 1 ma~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~ 46 (439)
|+. .++.|.+|++|||++..+|++||+.++|||+.||+.||..++
T Consensus 2 M~~-~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~~~ 46 (46)
T 1v92_A 2 AEE-RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDGG 46 (46)
T ss_dssp TTH-HHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHTCC
T ss_pred ccc-HHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 444 677899999999999999999999999999999999998764
No 2
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.5e-10 Score=89.23 Aligned_cols=43 Identities=37% Similarity=0.534 Sum_probs=40.4
Q ss_pred CcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613 4 PTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH 46 (439)
Q Consensus 4 p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~ 46 (439)
.+++.|+|||+|||+++.+|++||+.++|||+.||+.||..+.
T Consensus 14 ~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~~~ 56 (62)
T 2dal_A 14 ALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGGG 56 (62)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHSCC
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 3567899999999999999999999999999999999999886
No 3
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=1e-10 Score=91.73 Aligned_cols=40 Identities=20% Similarity=0.324 Sum_probs=38.3
Q ss_pred HHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613 7 ETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH 46 (439)
Q Consensus 7 eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~ 46 (439)
+.|.+||+|||+++++|++||+.++|||+.||+.||..+.
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~~~~ 58 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQETN 58 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 7899999999999999999999999999999999998765
No 4
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=3.4e-10 Score=88.73 Aligned_cols=42 Identities=26% Similarity=0.335 Sum_probs=39.5
Q ss_pred cHHHHHHHHHhhC-CCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613 5 TQETVDTFTSITG-ASQSVALQKLEEYGGNLNEAVNAYFSEGH 46 (439)
Q Consensus 5 ~~eaIqQFMsITG-ASeavA~qyLEeh~wdL~~AVNAYy~~~~ 46 (439)
.++.|+|||+||| ++..+|++||+.|+|||+.||+.||...+
T Consensus 18 ~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~~ 60 (67)
T 2dam_A 18 QTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQE 60 (67)
T ss_dssp HHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 4677999999999 99999999999999999999999999876
No 5
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=98.76 E-value=4.3e-09 Score=77.80 Aligned_cols=39 Identities=23% Similarity=0.315 Sum_probs=34.8
Q ss_pred cHHHHHHHHHhhCCCH-HHHHHHHHHhCCChHHHHHHhhh
Q 013613 5 TQETVDTFTSITGASQ-SVALQKLEEYGGNLNEAVNAYFS 43 (439)
Q Consensus 5 ~~eaIqQFMsITGASe-avA~qyLEeh~wdL~~AVNAYy~ 43 (439)
.++.|.+|.+|||++. ..|+.||+.|+|||+.||+.||-
T Consensus 5 ~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~~ 44 (45)
T 3e21_A 5 REMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVIP 44 (45)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC--
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHcC
Confidence 4677999999999996 99999999999999999999984
No 6
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=98.62 E-value=1.4e-08 Score=97.55 Aligned_cols=46 Identities=30% Similarity=0.478 Sum_probs=41.7
Q ss_pred CCCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCCc
Q 013613 2 TRPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGHR 47 (439)
Q Consensus 2 a~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~R 47 (439)
...+++.|.|||+|||+++++|++||+.|+|||+.|||+||.++..
T Consensus 12 ~~~~~~~i~qF~~iTg~~~~~A~~~L~~~~WdLe~Al~~ff~~~~~ 57 (270)
T 3bq3_A 12 ASPEQEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYDKEIG 57 (270)
T ss_dssp -CHHHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHHHHCC
T ss_pred ccchHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCccc
Confidence 4556788999999999999999999999999999999999998763
No 7
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=97.14 E-value=0.00062 Score=46.76 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhh
Q 013613 6 QETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYF 42 (439)
Q Consensus 6 ~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy 42 (439)
.+.|+++|.+ |.+...|++.|..++||++.|++.+|
T Consensus 5 ~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 5 NSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 5789999999 99999999999999999999999764
No 8
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.13 E-value=0.00058 Score=58.38 Aligned_cols=41 Identities=27% Similarity=0.473 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613 6 QETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH 46 (439)
Q Consensus 6 ~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~ 46 (439)
++.|++.|.+||+|+..|+..|.+++|||+.||+.+|....
T Consensus 40 eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~~ 80 (104)
T 1wj7_A 40 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNP 80 (104)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSS
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 56899999999999999999999999999999999997663
No 9
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=97.03 E-value=0.00033 Score=67.38 Aligned_cols=39 Identities=18% Similarity=0.430 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhc
Q 013613 6 QETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSE 44 (439)
Q Consensus 6 ~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~ 44 (439)
.++..+|-+|||+++++|.-||.+++|+|+.|||.||..
T Consensus 46 ~~~~~~f~~~~~~~~~~~~~~l~~~~w~~~~~~~~~~~~ 84 (362)
T 4gew_A 46 EQKLHEFAIITATDEAFAQSILQDVDWDLKKALDVFYGS 84 (362)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHTTSSSSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCcHHHHHHHHhhcCchHHHHHHHHcCC
Confidence 345889999999999999999999999999999999944
No 10
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=96.37 E-value=0.0056 Score=50.45 Aligned_cols=57 Identities=35% Similarity=0.407 Sum_probs=41.9
Q ss_pred CChHHHHHHHHHHHhhhhhhcCC---C-Ccc---------cccCCCCchHHHHHhhhchhHHHHHHHhhh
Q 013613 178 NDIEEQMIQAAIEASKQEASSGS---G-VVQ---------RELELPEDDEFSRAISLSLKTAEQEKTIRG 234 (439)
Q Consensus 178 NDiEeemiRaAIEASK~eaee~~---~-~~q---------~~~~~~eDdDLakAIsLS~ee~E~ek~lr~ 234 (439)
.+.+|+.||.||+.|=++..... . ..+ .....+||+||..||..|+++.|..|--+.
T Consensus 8 ~~~eDeDLkrAieLSL~Es~~~~~~~~yvp~~~~~~~~~~~~~~edeD~DLKAAIaASLrd~E~qK~~~~ 77 (81)
T 1q0v_A 8 PEDEEELIRKAIELSLKESRNSASSEPIVPVVESKNEVKRQEIEEEEDPDLKAAIQESLREAEEAKLRSE 77 (81)
T ss_dssp CSSHHHHHHHHHHHHHHCCCCCSCCCCCCCCCCCCCCCCCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCchHHHHHHHHHhHHHHcCCCCCCCCCCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999876552 1 111 012357799999999999999998875443
No 11
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=96.22 E-value=0.0066 Score=42.88 Aligned_cols=41 Identities=22% Similarity=0.350 Sum_probs=37.3
Q ss_pred CCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhc
Q 013613 3 RPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSE 44 (439)
Q Consensus 3 ~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~ 44 (439)
.|+.++|++.|++ |-++..|++.|..++||++.|+|-.|+.
T Consensus 2 ~p~e~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 2 TPKSLAVEELSGM-GFTEEEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp CHHHHHHHHHHTT-TSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHc-CCCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence 5778999999997 9999999999999999999999988753
No 12
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.08 E-value=0.01 Score=48.79 Aligned_cols=43 Identities=28% Similarity=0.481 Sum_probs=40.2
Q ss_pred CCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613 3 RPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH 46 (439)
Q Consensus 3 ~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~ 46 (439)
.+..+.|++.|.+ |.++..|++.|+..+||++.|++-.|+..+
T Consensus 27 ~~~ee~I~~Lv~M-GF~~~~A~~AL~~t~gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 27 SPSQESINQLVYM-GFDTVVAEAALRVFGGNVQLAAQTLAHHGG 69 (83)
T ss_dssp CCCHHHHHHHHHH-SCCHHHHHHHHHHTTTCHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 3568999999998 999999999999999999999999999887
No 13
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=95.93 E-value=0.011 Score=45.52 Aligned_cols=39 Identities=15% Similarity=0.285 Sum_probs=36.0
Q ss_pred cHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhh
Q 013613 5 TQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFS 43 (439)
Q Consensus 5 ~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~ 43 (439)
+++.|.+|+..||....=+.+.|+..+||++.|+..|-.
T Consensus 7 q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~ 45 (59)
T 1oai_A 7 QQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTH 45 (59)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 566799999999999999999999999999999999943
No 14
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.85 E-value=0.013 Score=46.84 Aligned_cols=42 Identities=17% Similarity=0.285 Sum_probs=38.2
Q ss_pred CcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613 4 PTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH 46 (439)
Q Consensus 4 p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~ 46 (439)
+.+++|++.|.+ |.++..|++.|+.++||++.||+-.|+..+
T Consensus 28 ~~ee~I~~L~eM-GF~r~~a~~AL~~~~~nve~Ave~Ll~~~~ 69 (73)
T 1vg5_A 28 ASEEQIQKLVAM-GFDRTQVEVALAAADDDLTVAVEILMSQSG 69 (73)
T ss_dssp CCHHHHHHHHTT-TCCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred ccHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 457899999997 899999999999999999999999998655
No 15
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=95.44 E-value=0.019 Score=44.09 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=36.7
Q ss_pred cHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhc
Q 013613 5 TQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSE 44 (439)
Q Consensus 5 ~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~ 44 (439)
+++.|.+|+..||....=+.+.|+..+||++.|+-.|-.-
T Consensus 6 q~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~~ 45 (57)
T 2jp7_A 6 QLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQSS 45 (57)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4677999999999999999999999999999999999553
No 16
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.19 E-value=0.034 Score=42.47 Aligned_cols=44 Identities=32% Similarity=0.432 Sum_probs=39.9
Q ss_pred CCCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613 2 TRPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH 46 (439)
Q Consensus 2 a~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~ 46 (439)
+.+..+.|++.|.+ |.++..|++.|...+||++.|++-.|+..+
T Consensus 6 ~~~~~~~v~~L~~M-GF~~~~a~~AL~~t~~nve~A~e~L~~~~~ 49 (63)
T 2dak_A 6 SGPPEDCVTTIVSM-GFSRDQALKALRATNNSLERAVDWIFSHID 49 (63)
T ss_dssp CCCCHHHHHHHHHH-TCCHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 35778999999997 999999999999999999999999998654
No 17
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.19 E-value=0.016 Score=42.46 Aligned_cols=39 Identities=15% Similarity=0.179 Sum_probs=35.6
Q ss_pred cHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhc
Q 013613 5 TQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSE 44 (439)
Q Consensus 5 ~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~ 44 (439)
..+.|++.|.+ |-++..|++.|+..+||++.|++-.|+.
T Consensus 8 ~~~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 8 YETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred CHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 46789999998 8999999999999999999999998873
No 18
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.18 E-value=0.048 Score=43.21 Aligned_cols=43 Identities=30% Similarity=0.463 Sum_probs=39.9
Q ss_pred CCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613 3 RPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH 46 (439)
Q Consensus 3 ~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~ 46 (439)
.+..+.|++.|.+ |-++..|++.|...+||++.||+-.|+.++
T Consensus 27 ~~~~~~v~~L~~M-GF~~~~a~~AL~~t~~nve~Ave~L~~~~~ 69 (73)
T 1wiv_A 27 DIDQSSVDTLLSF-GFAEDVARKALKASGGDIEKATDWVFNNSG 69 (73)
T ss_dssp SSCHHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 4678899999998 999999999999999999999999998876
No 19
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.07 E-value=0.036 Score=42.88 Aligned_cols=43 Identities=23% Similarity=0.390 Sum_probs=39.1
Q ss_pred CCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613 3 RPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH 46 (439)
Q Consensus 3 ~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~ 46 (439)
.+..++|++.|.+ |.+...|++.|..++||++.|++-.|+...
T Consensus 7 ~~~~~~I~~L~~M-GF~~~~a~~AL~~~~~nve~A~e~L~~~~~ 49 (63)
T 1wji_A 7 GVDEKALKHITEM-GFSKEASRQALMDNGNNLEAALNVLLTSNK 49 (63)
T ss_dssp SSCHHHHHHHHTT-TCCHHHHHHHHHHTTSCHHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 4678899999996 999999999999999999999999998765
No 20
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.54 E-value=0.047 Score=44.61 Aligned_cols=42 Identities=19% Similarity=0.263 Sum_probs=38.2
Q ss_pred CcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613 4 PTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH 46 (439)
Q Consensus 4 p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~ 46 (439)
++.+.|+|+|.+ |.++..|++.|...+|||+.|++-.|+..+
T Consensus 20 ~n~~~I~qL~~M-GF~~~~a~~AL~~~n~n~e~A~ewL~~h~~ 61 (85)
T 2dkl_A 20 IMSRLIKQLTDM-GFPREPAEEALKSNNMNLDQAMSALLEKKV 61 (85)
T ss_dssp HHHHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHTTSC
T ss_pred cCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHHCcC
Confidence 357889999997 999999999999999999999999998766
No 21
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=94.50 E-value=0.069 Score=39.65 Aligned_cols=38 Identities=24% Similarity=0.517 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhCC-CHHHHHHHHHHhCCChHHHHHHhhhc
Q 013613 6 QETVDTFTSITGA-SQSVALQKLEEYGGNLNEAVNAYFSE 44 (439)
Q Consensus 6 ~eaIqQFMsITGA-SeavA~qyLEeh~wdL~~AVNAYy~~ 44 (439)
.++|++.+.+ |- ++..|++.|...+||++.||+-.|+.
T Consensus 13 ~~~l~~L~~M-GF~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 13 QQQLEQLSAM-GFLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp HHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 4679999998 77 99999999999999999999998864
No 22
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=94.44 E-value=0.017 Score=42.30 Aligned_cols=41 Identities=22% Similarity=0.316 Sum_probs=37.7
Q ss_pred cHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613 5 TQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH 46 (439)
Q Consensus 5 ~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~ 46 (439)
.+++|++.+++ |.++..|++.|..++||++.|+|-.|+..+
T Consensus 4 e~eaI~rL~~m-GF~~~~a~~Al~a~~~n~e~A~~~Lf~~~~ 44 (47)
T 1dv0_A 4 EKEAIERLKAL-GFPESLVIQAYFACEKNENLAANFLLSQNF 44 (47)
T ss_dssp CHHHHTTTTTT-TCCHHHHHHHHTTTTSCHHHHHHHTTSCCC
T ss_pred hHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhCcC
Confidence 46789999998 999999999999999999999999998765
No 23
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=94.40 E-value=0.067 Score=39.76 Aligned_cols=38 Identities=24% Similarity=0.485 Sum_probs=34.0
Q ss_pred HHHHHHHHhhCC-CHHHHHHHHHHhCCChHHHHHHhhhcC
Q 013613 7 ETVDTFTSITGA-SQSVALQKLEEYGGNLNEAVNAYFSEG 45 (439)
Q Consensus 7 eaIqQFMsITGA-SeavA~qyLEeh~wdL~~AVNAYy~~~ 45 (439)
++|++.+.+ |- +...|++.|...+||++.||+-.|+.+
T Consensus 13 ~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 13 QQLEQLNSM-GFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 459999998 56 999999999999999999999998754
No 24
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.38 E-value=0.057 Score=40.64 Aligned_cols=41 Identities=24% Similarity=0.335 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhCCCHH-HHHHHHHHhCCChHHHHHHhhhcCCc
Q 013613 6 QETVDTFTSITGASQS-VALQKLEEYGGNLNEAVNAYFSEGHR 47 (439)
Q Consensus 6 ~eaIqQFMsITGASea-vA~qyLEeh~wdL~~AVNAYy~~~~R 47 (439)
+++|++.+.+ |.+.. .+++.|+..+||++.||+-.|+.++.
T Consensus 10 ~~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~ 51 (54)
T 2dah_A 10 QVQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQSSGP 51 (54)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 5689999998 88555 56999999999999999999998874
No 25
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}
Probab=94.20 E-value=0.078 Score=42.66 Aligned_cols=43 Identities=28% Similarity=0.390 Sum_probs=37.5
Q ss_pred cHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCCccC
Q 013613 5 TQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGHRDI 49 (439)
Q Consensus 5 ~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~R~~ 49 (439)
.+..|..|+.-|||..-.|+..|+-.+|||..|+|.| ++-|-+
T Consensus 17 mdavls~fvrstgaepgLaRDlleGKnWDl~AAL~D~--eqLrqv 59 (73)
T 2l2d_A 17 MDAVLSDFVRSTGAEPGLARDLLEGKNWDLTAALSDY--EQLRQV 59 (73)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH--HHHHHC
T ss_pred HHHHHHHHHHhcCCCcchhHHhhccCCccHhHHhhhH--HHHHHH
Confidence 4556889999999999999999999999999999999 555543
No 26
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.02 E-value=0.071 Score=41.17 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=38.2
Q ss_pred CcHHHHHHHHHhhCCCHHHHHHHHHHhCC-ChHHHHHHhhhcCC
Q 013613 4 PTQETVDTFTSITGASQSVALQKLEEYGG-NLNEAVNAYFSEGH 46 (439)
Q Consensus 4 p~~eaIqQFMsITGASeavA~qyLEeh~w-dL~~AVNAYy~~~~ 46 (439)
|..+.|+|.|.+ |-++..|++.|...+| |++.|+|-.|+..+
T Consensus 18 ~~e~~i~~L~~M-GF~~~~a~~AL~~t~~~nve~A~ewL~~~~~ 60 (64)
T 2cpw_A 18 KHGSALDVLLSM-GFPRARAQKALASTGGRSVQTACDWLFSHSG 60 (64)
T ss_dssp SCCCHHHHHHHH-TCCHHHHHHHHHHTTTSCHHHHHHHHHSCCS
T ss_pred CCHHHHHHHHHc-CCCHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Confidence 556789999997 9999999999999999 99999999998765
No 27
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.88 E-value=0.15 Score=41.45 Aligned_cols=43 Identities=14% Similarity=0.198 Sum_probs=39.4
Q ss_pred CCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613 3 RPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH 46 (439)
Q Consensus 3 ~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~ 46 (439)
.++.+.|+|.|.+ |-+...|++.|...+||++.|+|-.|+..+
T Consensus 27 ~~~e~~i~~L~~M-GF~~~~a~~AL~~t~~nve~A~ewL~~~~~ 69 (83)
T 2dai_A 27 RVDEAALRQLTEM-GFPENRATKALQLNHMSVPQAMEWLIEHAE 69 (83)
T ss_dssp SCCHHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHHGGG
T ss_pred CCCHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 3678899999997 999999999999999999999999998765
No 28
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=93.87 E-value=0.08 Score=41.68 Aligned_cols=39 Identities=26% Similarity=0.249 Sum_probs=35.6
Q ss_pred CCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHh
Q 013613 3 RPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAY 41 (439)
Q Consensus 3 ~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAY 41 (439)
..+.+.|...+..||++...+.+.|++.+|||+.||.-.
T Consensus 7 ~it~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~L 45 (64)
T 2cp9_A 7 GSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWL 45 (64)
T ss_dssp CCCCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 356788999999999999999999999999999999755
No 29
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=93.09 E-value=0.11 Score=40.10 Aligned_cols=43 Identities=9% Similarity=0.163 Sum_probs=38.5
Q ss_pred CCcHHHHHHHHHhhCCCHHHHHHHHHHh-CCChHHHHHHhhhcCC
Q 013613 3 RPTQETVDTFTSITGASQSVALQKLEEY-GGNLNEAVNAYFSEGH 46 (439)
Q Consensus 3 ~p~~eaIqQFMsITGASeavA~qyLEeh-~wdL~~AVNAYy~~~~ 46 (439)
.++.+.|+|+|.+ |-+...|++.|... +||++.|++-.|+..+
T Consensus 7 ~~~~~~v~~L~~M-GF~~~~a~~AL~~t~~~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 7 GAELTALESLIEM-GFPRGRAEKALALTGNQGIEAAMDWLMEHED 50 (64)
T ss_dssp CCCCCHHHHHHTT-TCCHHHHHHHHHHHTSCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHc-CCCHHHHHHHHHHhcCCCHHHHHHHHHhCCC
Confidence 4567899999996 99999999999999 6999999999998655
No 30
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.01 E-value=0.18 Score=36.23 Aligned_cols=40 Identities=13% Similarity=0.274 Sum_probs=36.0
Q ss_pred CCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhc
Q 013613 3 RPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSE 44 (439)
Q Consensus 3 ~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~ 44 (439)
.+..+.|++.|.+ |-+...|++.|...+ |++.|++-.|+.
T Consensus 7 ~~~~~~v~~L~~M-GF~~~~a~~AL~~~~-n~e~A~~~L~~h 46 (47)
T 2ekk_A 7 GVNQQQLQQLMDM-GFTREHAMEALLNTS-TMEQATEYLLTH 46 (47)
T ss_dssp SSCHHHHHHHHHH-HCCHHHHHHHHHHSC-SHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHc-CCCHHHHHHHHHHcC-CHHHHHHHHHcC
Confidence 4678899999996 999999999999996 999999988764
No 31
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.84 E-value=0.21 Score=39.64 Aligned_cols=43 Identities=12% Similarity=0.096 Sum_probs=38.9
Q ss_pred CCcHHHHHHHHHhhCCCHHHHHHHHHHhCC-ChHHHHHHhhhcCC
Q 013613 3 RPTQETVDTFTSITGASQSVALQKLEEYGG-NLNEAVNAYFSEGH 46 (439)
Q Consensus 3 ~p~~eaIqQFMsITGASeavA~qyLEeh~w-dL~~AVNAYy~~~~ 46 (439)
.++.+.|+|.|.+ |.++..|++.|...++ |++.|+|-.|+..+
T Consensus 7 ~~~e~~v~~L~~M-GF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 7 GLDESVIIQLVEM-GFPMDACRKAVYYTGNSGAEAAMNWVMSHMD 50 (74)
T ss_dssp SSCHHHHHHHHHH-SCCHHHHHHHHHHHTSCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHc-CCCHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 4688999999997 9999999999999985 89999999998665
No 32
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=92.67 E-value=0.16 Score=42.82 Aligned_cols=37 Identities=32% Similarity=0.482 Sum_probs=33.4
Q ss_pred CCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHH
Q 013613 3 RPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVN 39 (439)
Q Consensus 3 ~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVN 39 (439)
..+.+.|+-.|+=||+|...|.+.|++++|||=.||-
T Consensus 63 ~i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~ 99 (102)
T 1tr8_A 63 EIPEDDIELVMNQTGASREDATRALQETGGDLAEAIM 99 (102)
T ss_dssp CCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHH
Confidence 4577889999999999999999999999999987774
No 33
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=92.34 E-value=0.23 Score=40.33 Aligned_cols=43 Identities=23% Similarity=0.210 Sum_probs=38.5
Q ss_pred CCcHHHHHHHHHhhCCCHHHHHHHHHHhC-CChHHHHHHhhhcCC
Q 013613 3 RPTQETVDTFTSITGASQSVALQKLEEYG-GNLNEAVNAYFSEGH 46 (439)
Q Consensus 3 ~p~~eaIqQFMsITGASeavA~qyLEeh~-wdL~~AVNAYy~~~~ 46 (439)
.++.+.|++.|++ |.+...|++.|...+ ||++.|+|-.|+..+
T Consensus 27 ~~~e~~v~~L~~M-GF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~ 70 (84)
T 1vek_A 27 VANEEIVAQLVSM-GFSQLHCQKAAINTSNAGVEEAMNWLLSHMD 70 (84)
T ss_dssp CCCHHHHHHHHHH-TCCHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHc-CCCHHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 4578899999997 999999999999985 899999999998655
No 34
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=92.10 E-value=0.27 Score=39.48 Aligned_cols=40 Identities=18% Similarity=0.403 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhCC-CHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613 6 QETVDTFTSITGA-SQSVALQKLEEYGGNLNEAVNAYFSEGH 46 (439)
Q Consensus 6 ~eaIqQFMsITGA-SeavA~qyLEeh~wdL~~AVNAYy~~~~ 46 (439)
+++|++.+.+ |. +...+++.|+..+||++.||+-.|+..+
T Consensus 30 e~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~ 70 (74)
T 1vej_A 30 QQELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLGASG 70 (74)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHTCCC
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 4689999998 76 6788899999999999999999998655
No 35
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=90.86 E-value=0.43 Score=40.26 Aligned_cols=42 Identities=33% Similarity=0.468 Sum_probs=38.2
Q ss_pred CcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613 4 PTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH 46 (439)
Q Consensus 4 p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~ 46 (439)
+..+.|++.|++ |.+...|++.|...+||++.|++-.|+..+
T Consensus 77 ~~e~~v~~L~~M-GF~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 77 PPEEIVAIITSM-GFQRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp CCHHHHHHHHHH-TSCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred cCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 677899999996 999999999999999999999999987544
No 36
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=90.69 E-value=0.49 Score=34.43 Aligned_cols=37 Identities=14% Similarity=0.360 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhCC-CHHHHHHHHHHhCCChHHHHHHhhh
Q 013613 6 QETVDTFTSITGA-SQSVALQKLEEYGGNLNEAVNAYFS 43 (439)
Q Consensus 6 ~eaIqQFMsITGA-SeavA~qyLEeh~wdL~~AVNAYy~ 43 (439)
+++|++.+++ |. +...+++.|+..+||++.||+-.|+
T Consensus 8 ~~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 8 EHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 4679999998 75 5777899999999999999998875
No 37
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=90.58 E-value=0.52 Score=36.04 Aligned_cols=39 Identities=13% Similarity=0.336 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhCC-CHHHHHHHHHHhCCChHHHHHHhhhcC
Q 013613 6 QETVDTFTSITGA-SQSVALQKLEEYGGNLNEAVNAYFSEG 45 (439)
Q Consensus 6 ~eaIqQFMsITGA-SeavA~qyLEeh~wdL~~AVNAYy~~~ 45 (439)
+++|++.+++ |. +...+++.|+..+||++.||+-.|+.+
T Consensus 18 ~~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~~~ 57 (58)
T 1wr1_B 18 EHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLNGD 57 (58)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 3579999998 75 577889999999999999999998753
No 38
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=90.38 E-value=0.49 Score=36.60 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=38.4
Q ss_pred CCcHHHHHHHHHhhCCCHHHHHHHHHHhCC-ChHHHHHHhhhcCC
Q 013613 3 RPTQETVDTFTSITGASQSVALQKLEEYGG-NLNEAVNAYFSEGH 46 (439)
Q Consensus 3 ~p~~eaIqQFMsITGASeavA~qyLEeh~w-dL~~AVNAYy~~~~ 46 (439)
+++.+.|+|.|.. |-+...|++.|...++ +++.|+|-.|+..+
T Consensus 7 ~~~e~~v~~L~~M-GF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~ 50 (64)
T 2crn_A 7 GSSPSLLEPLLAM-GFPVHTALKALAATGRKTAEEALAWLHDHCN 50 (64)
T ss_dssp CCSCSSHHHHHHT-SCCHHHHHHHHHHHTSCCHHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHc-CCCHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 5677889999995 9999999999999876 99999999998765
No 39
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=90.33 E-value=0.39 Score=38.08 Aligned_cols=41 Identities=20% Similarity=0.414 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCCc
Q 013613 6 QETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGHR 47 (439)
Q Consensus 6 ~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~R 47 (439)
.+.|.+.+++ |-+...|.+.|++.++||+.|++=.|+..|-
T Consensus 20 ~e~V~~LvsM-GFs~~qA~kALKat~~NvErAaDWLFSH~D~ 60 (63)
T 1wgn_A 20 RQCVETVVNM-GYSYECVLRAMKKKGENIEQILDYLFAHSGP 60 (63)
T ss_dssp HHHHHHHHHH-HCCHHHHHHHHHHHCSCHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 3557777654 7999999999999999999999999999883
No 40
>2klz_A Ataxin-3; UIM, ubiquitin-binding, hydrolase, neurodegenerati nucleus, phosphoprotein, spinocerebellar ataxia, transcript transcription regulation; NMR {Homo sapiens}
Probab=89.06 E-value=0.25 Score=37.77 Aligned_cols=33 Identities=42% Similarity=0.563 Sum_probs=27.2
Q ss_pred ChHHHHHHHHHHHhhhhhhcCCCCcccccCCCCch--HHHHHhhhch
Q 013613 179 DIEEQMIQAAIEASKQEASSGSGVVQRELELPEDD--EFSRAISLSL 223 (439)
Q Consensus 179 DiEeemiRaAIEASK~eaee~~~~~q~~~~~~eDd--DLakAIsLS~ 223 (439)
|++|++++.|+.-|.++- ..||+ ||.+||.||-
T Consensus 4 dEDEedlqrALalSRQE~------------dmEDeeadLrrAiqLSm 38 (52)
T 2klz_A 4 DEDEEDLQRALALSRQEI------------DMEDEEADLRRAIQLSM 38 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH------------CCSSSHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHh------------ccchhHHHHHHHHHHHh
Confidence 678889999999998854 34555 9999999985
No 41
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=85.01 E-value=1.3 Score=37.79 Aligned_cols=41 Identities=20% Similarity=0.428 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613 6 QETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH 46 (439)
Q Consensus 6 ~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~ 46 (439)
+++|++.+.+=-.++..+++.|...+||++.||+-.|+.+.
T Consensus 67 ~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~~ 107 (108)
T 2cwb_A 67 QPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGGA 107 (108)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 56788888876567899999999999999999999998764
No 42
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=84.98 E-value=1.4 Score=33.77 Aligned_cols=37 Identities=14% Similarity=0.089 Sum_probs=32.5
Q ss_pred CcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHh
Q 013613 4 PTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAY 41 (439)
Q Consensus 4 p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAY 41 (439)
+..+.|.+.|++ |.|...|+|.|...+||++.|-|-.
T Consensus 10 ~~~~~Ia~Lm~m-GFsr~~ai~AL~~a~nnve~AaniL 46 (52)
T 2ooa_A 10 NVDAKIAKLMGE-GYAFEEVKRALEIAQNNVEVARSIL 46 (52)
T ss_dssp -CHHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred ChHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 456899999996 9999999999999999999998753
No 43
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=81.98 E-value=2.6 Score=32.40 Aligned_cols=39 Identities=18% Similarity=0.072 Sum_probs=34.3
Q ss_pred CCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhh
Q 013613 3 RPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYF 42 (439)
Q Consensus 3 ~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy 42 (439)
.|..+.|.+.|++ |.|...|+|.|...+||++.|.|-..
T Consensus 7 ~~~e~~I~~L~~l-GF~r~~ai~AL~~a~nnve~Aa~iL~ 45 (53)
T 2d9s_A 7 GQLSSEIERLMSQ-GYSYQDIQKALVIAHNNIEMAKNILR 45 (53)
T ss_dssp SCSHHHHHHHHHH-TCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHc-CCCHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3566789999996 99999999999999999999988653
No 44
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=81.54 E-value=3 Score=33.00 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=34.4
Q ss_pred HHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613 7 ETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH 46 (439)
Q Consensus 7 eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~ 46 (439)
++|+|.+++=-.+....++.|+..+||++.||+-.|+..+
T Consensus 21 ~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~~ 60 (67)
T 2dna_A 21 KEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQG 60 (67)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCCS
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 3788888875567777799999999999999999999877
No 45
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=80.56 E-value=0.55 Score=38.72 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=20.3
Q ss_pred CChHHHHHHHHHHHhhhhhhcCCC
Q 013613 178 NDIEEQMIQAAIEASKQEASSGSG 201 (439)
Q Consensus 178 NDiEeemiRaAIEASK~eaee~~~ 201 (439)
.++||++++|||+||=++.|+...
T Consensus 51 ~edeD~DLKAAIaASLrd~E~qK~ 74 (81)
T 1q0v_A 51 EEEEDPDLKAAIQESLREAEEAKL 74 (81)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHHHHHHH
Confidence 467789999999999999987644
No 46
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=79.49 E-value=1.1 Score=37.05 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=19.1
Q ss_pred ceeEEEeeCCCceeeeeeeee
Q 013613 413 SFGCLIYSPCSFVLKTTFLCY 433 (439)
Q Consensus 413 s~~~~~~~p~~~~~~~~f~~~ 433 (439)
.+.|.|++|+|.|+.|||.+-
T Consensus 23 ~~~IqiRlpdG~r~~rrF~~~ 43 (109)
T 2cr5_A 23 VVTVALRCPNGRVLRRRFFKS 43 (109)
T ss_dssp EEEEEEECTTSCEEEEEEESS
T ss_pred cEEEEEECCCCCEEEEEeCCC
Confidence 688999999999999999863
No 47
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=78.07 E-value=2.8 Score=32.04 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=37.3
Q ss_pred CCcHHHHHHHHH-hhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613 3 RPTQETVDTFTS-ITGASQSVALQKLEEYGGNLNEAVNAYFSEGH 46 (439)
Q Consensus 3 ~p~~eaIqQFMs-ITGASeavA~qyLEeh~wdL~~AVNAYy~~~~ 46 (439)
.+.++.|.++.. |=+.+..+....|++++||++.|||+.++-.+
T Consensus 7 ~~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~ 51 (59)
T 1wgl_A 7 GCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGE 51 (59)
T ss_dssp SSCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSC
T ss_pred CCCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcC
Confidence 456778887754 57999999999999999999999999987555
No 48
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=71.14 E-value=5.3 Score=34.13 Aligned_cols=39 Identities=10% Similarity=0.150 Sum_probs=33.2
Q ss_pred HHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613 7 ETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH 46 (439)
Q Consensus 7 eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~ 46 (439)
+.|.+|+++ |-+...|++.|..+++|++.||+-.|+...
T Consensus 78 ~~v~~L~eM-GF~~~~a~~AL~~~~nd~erAlewL~~~~~ 116 (118)
T 4ae4_A 78 QLMSKFKEM-GFELKDIKEVLLLHNNDQDNALEDLMARAG 116 (118)
T ss_dssp HHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHHhcc
Confidence 357788775 899999999999999999999998887543
No 49
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=71.10 E-value=0.72 Score=34.24 Aligned_cols=40 Identities=33% Similarity=0.360 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHhhhhhhcCCCCcccccCCCCchHHHHHhhhchh
Q 013613 180 IEEQMIQAAIEASKQEASSGSGVVQRELELPEDDEFSRAISLSLK 224 (439)
Q Consensus 180 iEeemiRaAIEASK~eaee~~~~~q~~~~~~eDdDLakAIsLS~e 224 (439)
.||+|+.+|+.-|.+++..-+ -+...+|.-|.|||.-|+.
T Consensus 5 tEEEq~ALA~rmSeQEA~~vn-----~~eE~EdellrKAIaESLn 44 (45)
T 3a1q_C 5 SEEEQFALALKMSEQEAREVN-----NQEEKEEELLRKAIAESLN 44 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhHHHHHHhh-----hHHHHHHHHHHHHHHHHhc
Confidence 589999999999999886552 2233567779999987764
No 50
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens}
Probab=70.89 E-value=0.62 Score=34.71 Aligned_cols=40 Identities=33% Similarity=0.360 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHhhhhhhcCCCCcccccCCCCchHHHHHhhhchh
Q 013613 180 IEEQMIQAAIEASKQEASSGSGVVQRELELPEDDEFSRAISLSLK 224 (439)
Q Consensus 180 iEeemiRaAIEASK~eaee~~~~~q~~~~~~eDdDLakAIsLS~e 224 (439)
.||+|+.+|+.-|.+++.+- +-+...+|.-|.|||.-|+.
T Consensus 2 tEEEq~ALA~kmSeQEA~~v-----n~~eE~E~~llrKAIaESLn 41 (46)
T 2rr9_C 2 TEEEQFALALKMSEQEAREV-----NSQEEEEEELLRKAIAESLN 41 (46)
T ss_dssp CSHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhHHHHHHh-----hhHHHHHHHHHHHHHHHHHH
Confidence 47899999999999988765 22334567779999987764
No 51
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=69.02 E-value=6.2 Score=30.21 Aligned_cols=39 Identities=10% Similarity=0.103 Sum_probs=32.8
Q ss_pred HHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613 8 TVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH 46 (439)
Q Consensus 8 aIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~ 46 (439)
.++++...==.+...-++.|++++|||+.||+....-+.
T Consensus 12 ~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~ 50 (54)
T 2cp8_A 12 LMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLSG 50 (54)
T ss_dssp HHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHSS
T ss_pred HHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhccC
Confidence 466777766679999999999999999999999876554
No 52
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=67.56 E-value=3.2 Score=32.34 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=18.0
Q ss_pred ceeEEEeeCCCceeeeeeee
Q 013613 413 SFGCLIYSPCSFVLKTTFLC 432 (439)
Q Consensus 413 s~~~~~~~p~~~~~~~~f~~ 432 (439)
...|-|++|+|.|+.+||..
T Consensus 7 ~~~i~iRlpdG~r~~~~F~~ 26 (84)
T 3qx1_A 7 VSKLRIRTPSGEFLERRFLA 26 (84)
T ss_dssp EEEEEEECTTSCEEEEEEET
T ss_pred eEEEEEECCCCCEEEEEeCC
Confidence 46799999999999999985
No 53
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=67.15 E-value=3.1 Score=35.42 Aligned_cols=21 Identities=10% Similarity=-0.120 Sum_probs=19.0
Q ss_pred ceeEEEeeCCCceeeeeeeee
Q 013613 413 SFGCLIYSPCSFVLKTTFLCY 433 (439)
Q Consensus 413 s~~~~~~~p~~~~~~~~f~~~ 433 (439)
.+.|-|++|+|.||.|||...
T Consensus 43 ~t~IqIRlPdG~rl~~rF~~~ 63 (124)
T 1wj4_A 43 KAQLMLRYPDGKREQITLPEQ 63 (124)
T ss_dssp EEEEEEECTTSCEEEEEEETT
T ss_pred cEEEEEECCCCCEEEEEeCCC
Confidence 688999999999999999864
No 54
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=64.40 E-value=5.6 Score=38.75 Aligned_cols=40 Identities=25% Similarity=0.275 Sum_probs=35.9
Q ss_pred CcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhh
Q 013613 4 PTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFS 43 (439)
Q Consensus 4 p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~ 43 (439)
.+.+.|.+....||+.--...+.|.+++||++.|++-.-.
T Consensus 3 ~ta~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 3 SSKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4567899999999999999999999999999999987643
No 55
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=62.36 E-value=14 Score=27.51 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=31.8
Q ss_pred HHHHHHHHh-hCCCHHHHHHHHHHhCCChHHHHHHhhhcC
Q 013613 7 ETVDTFTSI-TGASQSVALQKLEEYGGNLNEAVNAYFSEG 45 (439)
Q Consensus 7 eaIqQFMsI-TGASeavA~qyLEeh~wdL~~AVNAYy~~~ 45 (439)
+.+++.+.+ =.++..++..-|++.+||++.||+...+..
T Consensus 6 ~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~ 45 (49)
T 1otr_A 6 SKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEN 45 (49)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 445554443 789999999999999999999999887654
No 56
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=62.32 E-value=8.7 Score=35.84 Aligned_cols=36 Identities=25% Similarity=0.274 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHh
Q 013613 6 QETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAY 41 (439)
Q Consensus 6 ~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAY 41 (439)
.+.|.+....||+.--...+.|.+++||++.||+-.
T Consensus 4 a~~VKeLRe~TGagmmdCKkAL~e~~GD~ekAie~L 39 (196)
T 1aip_C 4 MELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLL 39 (196)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 356999999999999999999999999999999865
No 57
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=62.17 E-value=4.7 Score=33.36 Aligned_cols=21 Identities=10% Similarity=-0.078 Sum_probs=18.7
Q ss_pred ceeEEEeeCCCceeeeeeeee
Q 013613 413 SFGCLIYSPCSFVLKTTFLCY 433 (439)
Q Consensus 413 s~~~~~~~p~~~~~~~~f~~~ 433 (439)
...|-|++|+|.|+.+||...
T Consensus 13 ~t~IqIRlpdG~rl~~rF~~~ 33 (109)
T 2dzk_A 13 IARIQFRLPDGSSFTNQFPSD 33 (109)
T ss_dssp CEEEEEECSSSCEEEEEECTT
T ss_pred cEEEEEECCCCCEEEEEeCCC
Confidence 578999999999999999763
No 58
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=56.31 E-value=12 Score=29.14 Aligned_cols=40 Identities=18% Similarity=0.057 Sum_probs=35.0
Q ss_pred CcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhc
Q 013613 4 PTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSE 44 (439)
Q Consensus 4 p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~ 44 (439)
|..+.|.+.|+. |-|...|+|.|.-.+.|++.|-|-...=
T Consensus 6 p~e~~Ia~L~sm-Gfsr~da~~AL~ia~Ndv~~AtNiLlEf 45 (56)
T 2juj_A 6 QLSSEIENLMSQ-GYSYQDIQKALVIAQNNIEMAKNILREF 45 (56)
T ss_dssp HHHHHHHHHHTT-TCCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred CChHHHHHHHHc-CCCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 567889999985 9999999999999999999999876443
No 59
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=55.12 E-value=8.1 Score=38.53 Aligned_cols=41 Identities=15% Similarity=0.130 Sum_probs=36.1
Q ss_pred CcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcC
Q 013613 4 PTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEG 45 (439)
Q Consensus 4 p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~ 45 (439)
...++|++.|++ |-++..+++.|...+||++.||+-.|+.-
T Consensus 167 ~~~~~i~~l~~M-Gf~~~~~~~AL~a~~nn~~~A~e~L~~gi 207 (368)
T 1oqy_A 167 EYETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLTGI 207 (368)
T ss_dssp THHHHHHHHHTT-TCCSHHHHHHHHHSCSSTTHHHHTTTTSS
T ss_pred chHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 356779999887 89999999999999999999999998753
No 60
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=52.40 E-value=6.3 Score=33.50 Aligned_cols=21 Identities=14% Similarity=-0.146 Sum_probs=19.0
Q ss_pred ceeEEEeeCCCceeeeeeeee
Q 013613 413 SFGCLIYSPCSFVLKTTFLCY 433 (439)
Q Consensus 413 s~~~~~~~p~~~~~~~~f~~~ 433 (439)
...|-|++|+|.||.+||.+.
T Consensus 52 ~t~IqIRlpdG~rl~~rF~~~ 72 (127)
T 1s3s_G 52 TTNIQIRLADGGRLVQKFNHS 72 (127)
T ss_dssp CCCEEEEETTTTEEEEECCSS
T ss_pred cEEEEEECCCCCEEEEEeCCC
Confidence 689999999999999999753
No 61
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.56 E-value=37 Score=26.65 Aligned_cols=40 Identities=10% Similarity=0.271 Sum_probs=33.0
Q ss_pred CcHHHHHHHHH-hhCCCHHHHHHHHHHhCCChHHHHHHhhh
Q 013613 4 PTQETVDTFTS-ITGASQSVALQKLEEYGGNLNEAVNAYFS 43 (439)
Q Consensus 4 p~~eaIqQFMs-ITGASeavA~qyLEeh~wdL~~AVNAYy~ 43 (439)
+.+++++++.. |=..+..+...-|++++||++.|||+.++
T Consensus 17 ~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ 57 (67)
T 2dhy_A 17 EFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp CSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34566666643 57899999999999999999999999876
No 62
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=46.02 E-value=23 Score=30.18 Aligned_cols=41 Identities=22% Similarity=0.485 Sum_probs=35.0
Q ss_pred CcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcC
Q 013613 4 PTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEG 45 (439)
Q Consensus 4 p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~ 45 (439)
..++.|+++++. |-+...+.+.|.++|+|.+.|+|-.|...
T Consensus 7 ~e~~~v~~l~~M-GFp~~~~~kAl~~~g~~~e~amewL~~h~ 47 (118)
T 4ae4_A 7 SERQCVETVVNM-GYSYECVLRAMKAAGANIEQILDYLFAHG 47 (118)
T ss_dssp HHHHHHHHHHHT-TCCHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHCcCHHHHHHHHHHhc
Confidence 346678888774 99999999999999999999999998753
No 63
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=36.01 E-value=35 Score=26.15 Aligned_cols=42 Identities=26% Similarity=0.374 Sum_probs=32.4
Q ss_pred cHHHHHHHH-HhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613 5 TQETVDTFT-SITGASQSVALQKLEEYGGNLNEAVNAYFSEGH 46 (439)
Q Consensus 5 ~~eaIqQFM-sITGASeavA~qyLEeh~wdL~~AVNAYy~~~~ 46 (439)
..+.|.|-- -+-|-|..+-++-|...+.|+|.|||..++..|
T Consensus 9 Pe~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsRDd 51 (53)
T 2qho_B 9 PEELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSRDD 51 (53)
T ss_dssp CHHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC---
T ss_pred cHHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhcccc
Confidence 455666443 357999999999999999999999999887554
No 64
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=34.81 E-value=47 Score=27.36 Aligned_cols=34 Identities=29% Similarity=0.410 Sum_probs=28.4
Q ss_pred HHHHHHHhhCCC-HHHHHHHHHHhCCChHHHHHHh
Q 013613 8 TVDTFTSITGAS-QSVALQKLEEYGGNLNEAVNAY 41 (439)
Q Consensus 8 aIqQFMsITGAS-eavA~qyLEeh~wdL~~AVNAY 41 (439)
-++|.-.|||.. ...-.+.|+..+|||..||--.
T Consensus 27 lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~L 61 (80)
T 1vdl_A 27 FLNQLREITGINDAQILQQALKDSNGNLELAVAFL 61 (80)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHH
Confidence 578999999985 5566789999999999999644
No 65
>2d3g_P Ubiquitin interacting motif from hepatocyte growth factor-regulated tyrosine kinase...; protein-protein complex, UIM and ubiquitin; 1.70A {Bos taurus}
Probab=34.27 E-value=23 Score=23.87 Aligned_cols=18 Identities=39% Similarity=0.473 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhhhhhhc
Q 013613 181 EEQMIQAAIEASKQEASS 198 (439)
Q Consensus 181 EeemiRaAIEASK~eaee 198 (439)
|++++.+||.-|+-+++.
T Consensus 3 EeEEl~LAlAlS~sEae~ 20 (26)
T 2d3g_P 3 EEEELQLALALSQSEAEE 20 (26)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 445566666666655543
No 66
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=30.15 E-value=52 Score=27.47 Aligned_cols=42 Identities=12% Similarity=0.034 Sum_probs=36.2
Q ss_pred CcHHHHHHHHHhhCCCHHHHHHHHHHhCC-ChHHHHHHhhhcCC
Q 013613 4 PTQETVDTFTSITGASQSVALQKLEEYGG-NLNEAVNAYFSEGH 46 (439)
Q Consensus 4 p~~eaIqQFMsITGASeavA~qyLEeh~w-dL~~AVNAYy~~~~ 46 (439)
++.+.+++.|. =|-+...|.+.|...++ +++.|++-.+...+
T Consensus 2 ~d~~~l~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~ 44 (126)
T 2lbc_A 2 IDESSVMQLAE-MGFPLEACRKAVYFTGNMGAEVAFNWIIVHME 44 (126)
T ss_dssp CCTHHHHHHHT-TSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHHHHHHhcc
Confidence 56678899988 69999999999999976 89999999877655
No 67
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=28.16 E-value=90 Score=23.41 Aligned_cols=36 Identities=19% Similarity=0.111 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhh
Q 013613 6 QETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYF 42 (439)
Q Consensus 6 ~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy 42 (439)
.+.|.+.|+. |-|...|+|.|--.+.|++.|-|-..
T Consensus 5 e~~I~~L~s~-Gf~~~~~~rAL~ia~Nnie~A~nIL~ 40 (46)
T 2oo9_A 5 SSEIENLMSQ-GYSYQDIQKALVIAQNNIEMAKNILR 40 (46)
T ss_dssp HHHHHHHHHT-TBCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhhccHHHHHHHHH
Confidence 5678888884 99999999999999999999988653
No 68
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=25.47 E-value=21 Score=25.36 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=13.7
Q ss_pred HHHhhhHHHHHHHHhh
Q 013613 363 LREQQDDEYLASLLAD 378 (439)
Q Consensus 363 LR~qQDeaYlaSL~AD 378 (439)
|-++|...|++||+-|
T Consensus 18 LtEeQrn~yI~slkdd 33 (34)
T 1l6x_B 18 LNEEQRNAKIKSIRDD 33 (34)
T ss_dssp CCHHHHHHHHHHHHHC
T ss_pred CCHHHHHhHHHHHhcc
Confidence 5689999999999865
No 69
>1yx4_A 26S proteasome non-ATPase regulatory subunit 4; polyubiquitin, UIM, hydrolase; NMR {Homo sapiens} PDB: 1yx5_A 1yx6_A 2kde_A 2kdf_A
Probab=24.92 E-value=39 Score=30.03 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=16.1
Q ss_pred CCchHHHHHhhhchhHHH
Q 013613 210 PEDDEFSRAISLSLKTAE 227 (439)
Q Consensus 210 ~eDdDLakAIsLS~ee~E 227 (439)
..|.+|+-|+.||+|++.
T Consensus 37 ~~DPeLa~ALr~Smeee~ 54 (132)
T 1yx4_A 37 SADPELALALRVSMEEQR 54 (132)
T ss_dssp GGCHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHhHHHHH
Confidence 468999999999999887
No 70
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=24.21 E-value=97 Score=25.57 Aligned_cols=38 Identities=8% Similarity=0.224 Sum_probs=31.4
Q ss_pred HHHHHHhhC--CCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613 9 VDTFTSITG--ASQSVALQKLEEYGGNLNEAVNAYFSEGH 46 (439)
Q Consensus 9 IqQFMsITG--ASeavA~qyLEeh~wdL~~AVNAYy~~~~ 46 (439)
+.+..+|-| +++.+-++..=+++.|++.|||.+++...
T Consensus 38 Ld~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~~~ 77 (83)
T 1ufz_A 38 LDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQDG 77 (83)
T ss_dssp HHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhccc
Confidence 445556666 68899999999999999999999998765
No 71
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=22.80 E-value=9.9 Score=43.89 Aligned_cols=41 Identities=24% Similarity=0.284 Sum_probs=37.3
Q ss_pred CCCCcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHh
Q 013613 1 MTRPTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAY 41 (439)
Q Consensus 1 ma~p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAY 41 (439)
||..+.+.|++....|||.--...+.|.+.+||++.||+-.
T Consensus 1 Ma~ita~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~L 41 (1289)
T 3avx_A 1 MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENM 41 (1289)
T ss_dssp -CCSCCSCTHHHHTTTCCCTTTTTTTTTTTTTCHHHHHHHH
T ss_pred CCccCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 77788899999999999999999999999999999999854
No 72
>2qeu_A Putative carboxymuconolactone decarboxylase; YP_555818.1, carboxymuconolactone decarboxylase family; HET: CIT GOL; 1.65A {Burkholderia xenovorans}
Probab=22.58 E-value=38 Score=28.50 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=17.7
Q ss_pred CCCchhhhhHHHHHHHHHhcccCC
Q 013613 306 GGISSKELDEAVMLEAALFGEAAT 329 (439)
Q Consensus 306 GGIss~e~dea~mleaamfggipe 329 (439)
-|+|.+|+.|++++ |++++|.|-
T Consensus 95 ~G~t~eeI~eai~~-a~~~~G~p~ 117 (141)
T 2qeu_A 95 AGLSVDELIEGILL-GIIVYGMPA 117 (141)
T ss_dssp TTCCHHHHHHHHHH-HHHHHCTHH
T ss_pred cCCCHHHHHHHHHH-HHHHcchHH
Confidence 39999999998877 556666665
No 73
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=28.19 E-value=18 Score=32.05 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=29.3
Q ss_pred HHHHHHHhhCCC-HHHHHHHHHHhCCChHHHHHHh
Q 013613 8 TVDTFTSITGAS-QSVALQKLEEYGGNLNEAVNAY 41 (439)
Q Consensus 8 aIqQFMsITGAS-eavA~qyLEeh~wdL~~AVNAY 41 (439)
.++|.-.|||.. ...=.+.|+..+|||..||--+
T Consensus 21 lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~L 55 (129)
T 2lva_A 21 LLNQLREITGIQDPSFLHEALKASNGDITQAVSLL 55 (129)
Confidence 478999999998 7777889999999999998544
No 74
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=27.85 E-value=19 Score=31.99 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=16.1
Q ss_pred CCchHHHHHhhhchhHHHH
Q 013613 210 PEDDEFSRAISLSLKTAEQ 228 (439)
Q Consensus 210 ~eDdDLakAIsLS~ee~E~ 228 (439)
.+.|||.+||.||+.|.-+
T Consensus 94 d~KDDLQ~AIALSLqES~~ 112 (129)
T 2lva_A 94 DNKDDLQAAIALSLLESPK 112 (129)
Confidence 4689999999999988654
No 75
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=21.62 E-value=65 Score=25.79 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHHhCCChHHHHHHhhhc
Q 013613 17 GASQSVALQKLEEYGGNLNEAVNAYFSE 44 (439)
Q Consensus 17 GASeavA~qyLEeh~wdL~~AVNAYy~~ 44 (439)
....--..+.|+.|+.|++.+||+.+.+
T Consensus 26 dLG~gfi~~~L~~y~~nvE~vin~LLE~ 53 (71)
T 2di0_A 26 DLGEGFILACLEYYHYDPEQVINNILEE 53 (71)
T ss_dssp SSCHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 5667778899999999999999999874
No 76
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=21.23 E-value=1.5e+02 Score=25.74 Aligned_cols=42 Identities=17% Similarity=0.291 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCCcc
Q 013613 6 QETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGHRD 48 (439)
Q Consensus 6 ~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~R~ 48 (439)
-+.|.++|.=|+.+..+-+|.|=|..|+|.+| -.|+.++-|.
T Consensus 14 ~~~i~~lMeef~~DL~sVTqAlLK~SGel~at-~~fL~~~~r~ 55 (111)
T 3k6g_A 14 IKIIRQLMEKFNLDLSTVTQAFLKNSGELEAT-SAFLASGQRA 55 (111)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHH-HHHHHHSSCT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHccccHHHH-HHHHhCCCcC
Confidence 46789999999999999999999999999555 4566666644
No 77
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.63 E-value=21 Score=34.09 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=0.0
Q ss_pred CCchHHHHHhhhchhHHH
Q 013613 210 PEDDEFSRAISLSLKTAE 227 (439)
Q Consensus 210 ~eDdDLakAIsLS~ee~E 227 (439)
..|++||-|+.||+||+.
T Consensus 223 ~~dpela~alr~s~eee~ 240 (268)
T 4b4t_W 223 SMDPELAMALRLSMEEEQ 240 (268)
T ss_dssp ------------------
T ss_pred CCCHHHHHHHHHhHHHHH
Confidence 469999999999998776
No 78
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=20.10 E-value=75 Score=34.62 Aligned_cols=42 Identities=33% Similarity=0.424 Sum_probs=36.2
Q ss_pred CcHHHHHHHHHhhCCCHHHHHHHHHHhCCChHHHHHHhhhcCC
Q 013613 4 PTQETVDTFTSITGASQSVALQKLEEYGGNLNEAVNAYFSEGH 46 (439)
Q Consensus 4 p~~eaIqQFMsITGASeavA~qyLEeh~wdL~~AVNAYy~~~~ 46 (439)
++.+.|.+.++ -|.+...|++.|++.++|++.||+-.|+..+
T Consensus 719 ~~~e~i~~l~~-mGf~~~~a~~aL~~t~~~~eraidwlfs~~d 760 (854)
T 3ihp_A 719 PPEDCVTTIVS-MGFSRDQALKALRATNNSLERAVDWIFSHID 760 (854)
T ss_dssp CCHHHHHHHHT-TTCCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHhhcCcHHHHHHhhhcCcc
Confidence 45566766655 5899999999999999999999999999877
Done!