BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013614
(439 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E04|A Chain A, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|B Chain B, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|C Chain C, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|D Chain D, Crystal Structure Of Human Fumarate Hydratase
Length = 490
Score = 610 bits (1573), Expect = e-175, Method: Compositional matrix adjust.
Identities = 296/413 (71%), Positives = 339/413 (82%), Gaps = 1/413 (0%)
Query: 26 YGACWRSYSTSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGI 85
Y + SFR E DTFG + VP+DK +GAQT RS NF IGG ERMP P+++AFGI
Sbjct: 19 YFQSMMASQNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPTPVIKAFGI 78
Query: 86 LKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIA 145
LK+ AA+VN +YGLDP I AIM+AA EVAEGKLNDHFPLVVWQTGSGTQ+NMN NEVI+
Sbjct: 79 LKRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVIS 138
Query: 146 NRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSL 204
NRA E+LG + G KI VHPNDHVN+SQSSNDTFPT MHIAAA+E + L+P L+ LH++L
Sbjct: 139 NRAIEMLGGELGSKIPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVLLPGLQKLHDAL 198
Query: 205 HSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTA 264
+KS EF I+KIGRTHTQDA PLTLGQEFSGY QVKY + R+ +PR+Y+LA GGTA
Sbjct: 199 DAKSKEFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMPRIYELAAGGTA 258
Query: 265 VGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKI 324
VGTGLNT+ GF K+A+ VA T LPFVTA NKFEALAAHDA VE SGA+NT A SLMKI
Sbjct: 259 VGTGLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKI 318
Query: 325 ANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGG 384
AND+R LGSGPR GLGELILPENEPGSSIMPGKVNPTQCEA+TMV AQV+GNHVA+TVGG
Sbjct: 319 ANDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGG 378
Query: 385 SNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE 437
SNGHFELNVFKPM+ +LHS RLLGDAS SF +NCV GIQAN ERI+KL++E
Sbjct: 379 SNGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNE 431
>pdb|1YFM|A Chain A, Recombinant Yeast Fumarase
Length = 488
Score = 567 bits (1461), Expect = e-162, Method: Compositional matrix adjust.
Identities = 284/411 (69%), Positives = 321/411 (78%), Gaps = 1/411 (0%)
Query: 26 YGACWRSYSTSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGI 85
Y R ++SFR E D FG I VP+DK WGAQTQRS QNF IGG RERMP P+V AFG+
Sbjct: 17 YKLNIRRMNSSFRTETDAFGEIHVPADKYWGAQTQRSFQNFKIGGARERMPLPLVHAFGV 76
Query: 86 LKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVI 144
LKK AA VN G LDP I KAI QAA EVA GKL+DHFPLVV+QTGSGTQSNMNANEVI
Sbjct: 77 LKKSAAIVNESLGGLDPKISKAIQQAADEVASGKLDDHFPLVVFQTGSGTQSNMNANEVI 136
Query: 145 ANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSL 204
+NRA EILG K G K VHPN+H N+SQSSNDTFPTVMHIAA+++ + LIP L L N+L
Sbjct: 137 SNRAIEILGGKIGSKQVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNELIPELTNLKNAL 196
Query: 205 HSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTA 264
+KS EF IVKIGRTH QDATPLTLGQEFSGY QV+ GI RV L + LAQGGTA
Sbjct: 197 EAKSKEFDHIVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTA 256
Query: 265 VGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKI 324
VGTGLNTK GFDVKIA +++ET L F TA N+FEALAAHDA VE SGALNT+A SL KI
Sbjct: 257 VGTGLNTKPGFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKI 316
Query: 325 ANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGG 384
A D+R LGSGPRCG EL+LPENEPGSSIMPGKVNPTQ EALT VC QV+GN+ AIT G
Sbjct: 317 AQDIRYLGSGPRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAG 376
Query: 385 SNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLL 435
S G FELNVFKP++ + LL+S+RL+ DA+ SF +CV GI+AN RI +LL
Sbjct: 377 SQGQFELNVFKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELL 427
>pdb|3GTD|A Chain A, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
pdb|3GTD|B Chain B, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
Length = 482
Score = 508 bits (1309), Expect = e-144, Method: Compositional matrix adjust.
Identities = 248/401 (61%), Positives = 301/401 (75%), Gaps = 4/401 (0%)
Query: 36 SFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNM 95
++R E D+FG I + WGAQTQRSL NF I +++MP+ ++RA ILKKCAA+VN
Sbjct: 24 NYRIESDSFGEIQIEEKFYWGAQTQRSLNNFKIS--KQKMPKILIRALAILKKCAAQVNY 81
Query: 96 EYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGH 154
E+G L+ I +I +A + G+ D+FPLVVWQTGSGTQ+NMN NEVIA+ A E L
Sbjct: 82 EFGDLEYKIATSIDKAIDRILAGEFEDNFPLVVWQTGSGTQTNMNMNEVIASIANEELTG 141
Query: 155 KRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKD 213
K+G K VHPNDHVN+ QSSND+FPT MHIA + T +LIP L L L KS ++
Sbjct: 142 KKGGKFPVHPNDHVNKGQSSNDSFPTAMHIATVLATKQQLIPALNNLLTYLQDKSKDWDK 201
Query: 214 IVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKK 273
I+KIGRTH QDATPLTL QEFSGY TQ++Y ++R+ L ++Y LAQGGTAVGTG+N+K
Sbjct: 202 IIKIGRTHLQDATPLTLKQEFSGYITQIEYALERIEDALKKVYLLAQGGTAVGTGINSKI 261
Query: 274 GFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGS 333
GFD+K A VAE T PF TA NKFE+LAAHDA VE SG LNT+A SLMKIAND+RLLGS
Sbjct: 262 GFDIKFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSGTLNTIAVSLMKIANDIRLLGS 321
Query: 334 GPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNV 393
GPRCGLGEL LPENEPGSSIMPGKVNPTQ EALTMVC QV+GNHV +T+ GSNGH ELNV
Sbjct: 322 GPRCGLGELHLPENEPGSSIMPGKVNPTQVEALTMVCTQVMGNHVTVTIAGSNGHLELNV 381
Query: 394 FKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 434
FKP+I +L S+ LL D+ SF +CV+G++ N RI+ L
Sbjct: 382 FKPVIIYNILQSIELLSDSVNSFVTHCVKGLEPNIARINTL 422
>pdb|4HGV|A Chain A, Crystal Structure Of A Fumarate Hydratase
pdb|4HGV|B Chain B, Crystal Structure Of A Fumarate Hydratase
pdb|4HGV|C Chain C, Crystal Structure Of A Fumarate Hydratase
pdb|4HGV|D Chain D, Crystal Structure Of A Fumarate Hydratase
Length = 495
Score = 506 bits (1302), Expect = e-143, Method: Compositional matrix adjust.
Identities = 256/403 (63%), Positives = 295/403 (73%), Gaps = 4/403 (0%)
Query: 35 TSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVN 94
TS R E DTFGPI V SD+ WGAQ QRSL NF IG E++ P IVRA GI+K+ AA+ N
Sbjct: 34 TSTRTETDTFGPIEVASDRYWGAQAQRSLGNFKIGWEKQ--PLAIVRALGIVKQAAARAN 91
Query: 95 MEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 153
G LDPAIG AI++AAQEV +GKL++HFPLVVWQTGSGTQSN NANEV++NRA E+LG
Sbjct: 92 XALGRLDPAIGDAIVKAAQEVIDGKLDEHFPLVVWQTGSGTQSNXNANEVVSNRAIELLG 151
Query: 154 HKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFK 212
G +K VHPNDHVN SQSSNDT+PT HIA A L+P LK LH +L K F
Sbjct: 152 GVXGSKKPVHPNDHVNXSQSSNDTYPTAXHIACAERVIHDLLPALKHLHKALEEKVKAFD 211
Query: 213 DIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTK 272
I+KIGRTHTQDATPLTLGQEFSGY QV I R+ LP + +LAQGGTAVGTGLN
Sbjct: 212 HIIKIGRTHTQDATPLTLGQEFSGYAAQVASSIKRIEXTLPGLCELAQGGTAVGTGLNAP 271
Query: 273 KGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLG 332
GF K+A +A T + F +A NKFEALAAHD+ V + GA+N AA+L KIAND+R LG
Sbjct: 272 VGFAEKVAEEIAAITGIGFTSAPNKFEALAAHDSXVFSHGAINATAAALFKIANDIRFLG 331
Query: 333 SGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELN 392
SGPR GLGEL LPENEPGSSI PGKVNPTQCEALT VC QV GNH A+T GS GHFELN
Sbjct: 332 SGPRSGLGELSLPENEPGSSIXPGKVNPTQCEALTQVCVQVFGNHAALTFAGSQGHFELN 391
Query: 393 VFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLL 435
V+ P+ A L S++LL DA+ SF NCV GI+A + I L
Sbjct: 392 VYNPLXAYNFLQSVQLLADAAISFTDNCVVGIEAREDNIKAAL 434
>pdb|3TV2|A Chain A, Structure Of A Class Ii Fumarate Hydratase From
Burkholderia Pseudomallei
Length = 459
Score = 494 bits (1273), Expect = e-140, Method: Compositional matrix adjust.
Identities = 247/402 (61%), Positives = 294/402 (73%), Gaps = 4/402 (0%)
Query: 38 REEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEY 97
R E+DTFG I VP+ +LWGAQTQRSLQNF I E++ PE ++ A ++K+ AA VN+E
Sbjct: 1 RMERDTFGEIAVPAARLWGAQTQRSLQNFKISTEKQS-PE-LIHALALIKRAAAAVNLEL 58
Query: 98 G-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKR 156
G L AI+ AA E+ G+ D FPL VWQTGSGTQ+NMN NEVIANRA+E+LG +R
Sbjct: 59 GVLAQDKANAIVAAADEIIAGRHADEFPLAVWQTGSGTQTNMNLNEVIANRASELLGGER 118
Query: 157 GE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIV 215
GE + VHPND VNR QSSND FPT MHIAAA L+P L+ L +L +K+ F DIV
Sbjct: 119 GESRAVHPNDDVNRGQSSNDVFPTAMHIAAARAIVDHLLPALRTLRATLDAKAAAFADIV 178
Query: 216 KIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGF 275
KIGRTH QDATPLTLGQEFSGY Q+ GI V LP +Y+LAQGGTAVGTGLN F
Sbjct: 179 KIGRTHLQDATPLTLGQEFSGYVAQLDQGIRHVEAALPHLYELAQGGTAVGTGLNAHPKF 238
Query: 276 DVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGP 335
+A+ + T LPFV+A NKFE +AA DA V GAL TVAASLMKIAND+R L SGP
Sbjct: 239 AAGVAAEIGRLTGLPFVSAPNKFEVMAAADALVFAHGALKTVAASLMKIANDIRWLASGP 298
Query: 336 RCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFK 395
RCGLGEL +PENEPGSSIMPGKVNPTQ EA+TM+C QV GN VA+ GG++G+FELNVF+
Sbjct: 299 RCGLGELSIPENEPGSSIMPGKVNPTQSEAVTMLCCQVFGNDVAVNFGGASGNFELNVFR 358
Query: 396 PMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE 437
PMIA +L S+RLL D + F +C GI+ NR RI LL+E
Sbjct: 359 PMIAHNVLQSVRLLADGAQGFNDHCAVGIEPNRARIDALLNE 400
>pdb|1FUO|A Chain A, Fumarase C With Bound Citrate
pdb|1FUO|B Chain B, Fumarase C With Bound Citrate
pdb|1YFE|A Chain A, Crystal Structure Of Apo Fumarase C From Escherichia Coli
Length = 467
Score = 488 bits (1257), Expect = e-138, Method: Compositional matrix adjust.
Identities = 243/404 (60%), Positives = 298/404 (73%), Gaps = 4/404 (0%)
Query: 36 SFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNM 95
+ R EKD+ G I VP+DKLWGAQTQRSL++F I E+MP ++ A + K+ AAKVN
Sbjct: 3 TVRSEKDSMGAIDVPADKLWGAQTQRSLEHFRIS--TEKMPTSLIHALALTKRAAAKVNE 60
Query: 96 EYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGH 154
+ GL AI QAA EV G+ +D FPL +WQTGSGTQSNMN NEV+ANRA+E+LG
Sbjct: 61 DLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGG 120
Query: 155 KRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKD 213
RG E+ VHPND VN+SQSSND FPT MH+AA + +LIP LK L +L+ KS F D
Sbjct: 121 VRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFAD 180
Query: 214 IVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKK 273
IVKIGRTH QDATPLTLGQE SG+ +++ + + LP + +LA GGTAVGTGLNT
Sbjct: 181 IVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHP 240
Query: 274 GFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGS 333
+ ++A +A T PFVTA NKFEALA DA V+ GAL +AASLMKIANDVR L S
Sbjct: 241 EYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLAS 300
Query: 334 GPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNV 393
GPRCG+GE+ +PENEPGSSIMPGKVNPTQCEALTM+C QV+GN VAI +GG++G+FELNV
Sbjct: 301 GPRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNV 360
Query: 394 FKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE 437
F+PM+ L S+RLL D SF K+C GI+ NRERI++LL+E
Sbjct: 361 FRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNE 404
>pdb|1FUP|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUP|B Chain B, Fumarase With Bound Pyromellitic Acid
pdb|1FUQ|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUQ|B Chain B, Fumarase With Bound Pyromellitic Acid
Length = 472
Score = 488 bits (1255), Expect = e-138, Method: Compositional matrix adjust.
Identities = 243/404 (60%), Positives = 298/404 (73%), Gaps = 4/404 (0%)
Query: 36 SFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNM 95
+ R EKD+ G I VP+DKLWGAQTQRSL++F I E+MP ++ A + K+ AAKVN
Sbjct: 3 TVRSEKDSMGAIDVPADKLWGAQTQRSLEHFRIS--TEKMPTSLIHALALTKRAAAKVNE 60
Query: 96 EYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGH 154
+ GL AI QAA EV G+ +D FPL +WQTGSGTQSNMN NEV+ANRA+E+LG
Sbjct: 61 DLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGG 120
Query: 155 KRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKD 213
RG E+ VHPND VN+SQSSND FPT MH+AA + +LIP LK L +L+ KS F D
Sbjct: 121 VRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFAD 180
Query: 214 IVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKK 273
IVKIGRTH QDATPLTLGQE SG+ +++ + + LP + +LA GGTAVGTGLNT
Sbjct: 181 IVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHP 240
Query: 274 GFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGS 333
+ ++A +A T PFVTA NKFEALA DA V+ GAL +AASLMKIANDVR L S
Sbjct: 241 EYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLAS 300
Query: 334 GPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNV 393
GPRCG+GE+ +PENEPGSSIMPGKVNPTQCEALTM+C QV+GN VAI +GG++G+FELNV
Sbjct: 301 GPRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNV 360
Query: 394 FKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE 437
F+PM+ L S+RLL D SF K+C GI+ NRERI++LL+E
Sbjct: 361 FRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNE 404
>pdb|1KQ7|A Chain A, E315q Mutant Form Of Fumarase C From E.Coli
pdb|1KQ7|B Chain B, E315q Mutant Form Of Fumarase C From E.Coli
Length = 467
Score = 487 bits (1254), Expect = e-138, Method: Compositional matrix adjust.
Identities = 242/404 (59%), Positives = 298/404 (73%), Gaps = 4/404 (0%)
Query: 36 SFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNM 95
+ R EKD+ G I VP+DKLWGAQTQRSL++F I E+MP ++ A + K+ AAKVN
Sbjct: 3 TVRSEKDSMGAIDVPADKLWGAQTQRSLEHFRIS--TEKMPTSLIHALALTKRAAAKVNE 60
Query: 96 EYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGH 154
+ GL AI QAA EV G+ +D FPL +WQTGSGTQSNMN NEV+ANRA+E+LG
Sbjct: 61 DLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGG 120
Query: 155 KRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKD 213
RG E+ VHPND VN+SQSSND FPT MH+AA + +LIP LK L +L+ KS F D
Sbjct: 121 VRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFAD 180
Query: 214 IVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKK 273
IVKIGRTH QDATPLTLGQE SG+ +++ + + LP + +LA GGTAVGTGLNT
Sbjct: 181 IVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHP 240
Query: 274 GFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGS 333
+ ++A +A T PFVTA NKFEALA DA V+ GAL +AASLMKIANDVR L S
Sbjct: 241 EYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLAS 300
Query: 334 GPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNV 393
GPRCG+GE+ +PEN+PGSSIMPGKVNPTQCEALTM+C QV+GN VAI +GG++G+FELNV
Sbjct: 301 GPRCGIGEISIPENQPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNV 360
Query: 394 FKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE 437
F+PM+ L S+RLL D SF K+C GI+ NRERI++LL+E
Sbjct: 361 FRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNE 404
>pdb|1FUR|A Chain A, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
pdb|1FUR|B Chain B, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
Length = 467
Score = 486 bits (1251), Expect = e-137, Method: Compositional matrix adjust.
Identities = 242/404 (59%), Positives = 298/404 (73%), Gaps = 4/404 (0%)
Query: 36 SFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNM 95
+ R EKD+ G I VP+DKLWGAQTQRSL++F I E+MP ++ A + K+ AAKVN
Sbjct: 3 TVRSEKDSMGAIDVPADKLWGAQTQRSLEHFRIS--TEKMPTSLIHALALTKRAAAKVNE 60
Query: 96 EYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGH 154
+ GL AI QAA EV G+ +D FPL +WQTGSGTQSNMN NEV+ANRA+E+LG
Sbjct: 61 DLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGG 120
Query: 155 KRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKD 213
RG E+ VHPND VN+SQSSND FPT MH+AA + +LIP LK L +L+ KS F D
Sbjct: 121 VRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFAD 180
Query: 214 IVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKK 273
IVKIGRT+ QDATPLTLGQE SG+ +++ + + LP + +LA GGTAVGTGLNT
Sbjct: 181 IVKIGRTNLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHP 240
Query: 274 GFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGS 333
+ ++A +A T PFVTA NKFEALA DA V+ GAL +AASLMKIANDVR L S
Sbjct: 241 EYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLAS 300
Query: 334 GPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNV 393
GPRCG+GE+ +PENEPGSSIMPGKVNPTQCEALTM+C QV+GN VAI +GG++G+FELNV
Sbjct: 301 GPRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNV 360
Query: 394 FKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE 437
F+PM+ L S+RLL D SF K+C GI+ NRERI++LL+E
Sbjct: 361 FRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNE 404
>pdb|2FUS|A Chain A, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
pdb|2FUS|B Chain B, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
Length = 467
Score = 486 bits (1251), Expect = e-137, Method: Compositional matrix adjust.
Identities = 242/404 (59%), Positives = 298/404 (73%), Gaps = 4/404 (0%)
Query: 36 SFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNM 95
+ R EKD+ G I VP+DKLWGAQTQRSL++F I E+MP ++ A + K+ AAKVN
Sbjct: 3 TVRSEKDSMGAIDVPADKLWGAQTQRSLEHFRIS--TEKMPTSLIHALALTKRAAAKVNE 60
Query: 96 EYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGH 154
+ GL AI QAA EV G+ +D FPL +WQTGSGTQSNMN NEV+ANRA+E+LG
Sbjct: 61 DLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGG 120
Query: 155 KRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKD 213
RG E+ V+PND VN+SQSSND FPT MH+AA + +LIP LK L +L+ KS F D
Sbjct: 121 VRGMERKVNPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFAD 180
Query: 214 IVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKK 273
IVKIGRTH QDATPLTLGQE SG+ +++ + + LP + +LA GGTAVGTGLNT
Sbjct: 181 IVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHP 240
Query: 274 GFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGS 333
+ ++A +A T PFVTA NKFEALA DA V+ GAL +AASLMKIANDVR L S
Sbjct: 241 EYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLAS 300
Query: 334 GPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNV 393
GPRCG+GE+ +PENEPGSSIMPGKVNPTQCEALTM+C QV+GN VAI +GG++G+FELNV
Sbjct: 301 GPRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNV 360
Query: 394 FKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE 437
F+PM+ L S+RLL D SF K+C GI+ NRERI++LL+E
Sbjct: 361 FRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNE 404
>pdb|1VDK|A Chain A, Crystal Structure Of Fumarase From Thermus Thermophilus
Hb8
pdb|1VDK|B Chain B, Crystal Structure Of Fumarase From Thermus Thermophilus
Hb8
Length = 466
Score = 466 bits (1198), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/402 (56%), Positives = 285/402 (70%), Gaps = 1/402 (0%)
Query: 37 FREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNME 96
+R E+DT G + VP+DK WGAQTQRSL+NF IG +R RMP I+RA+G+LKK AA+ N+E
Sbjct: 3 YRIERDTMGEVRVPADKYWGAQTQRSLENFRIGTDRFRMPLEIIRAYGMLKKAAARANLE 62
Query: 97 YG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHK 155
G L I KAI+QAA+EV +GK +DHFPLVV+QTGSGTQ+NMN NEVIANRA+EILG
Sbjct: 63 LGELPEEIAKAIIQAAEEVVQGKWDDHFPLVVFQTGSGTQTNMNVNEVIANRASEILGKP 122
Query: 156 RGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIV 215
G K HPNDHVNR QSSNDTFPT M++A A+ + RL P ++ L + +K+ F IV
Sbjct: 123 LGSKYAHPNDHVNRGQSSNDTFPTAMYVAVALALHQRLYPAVEGLIRTFTAKAQAFDQIV 182
Query: 216 KIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGF 275
K+GRTH DA P+TLGQE + Q+K + V +Y LA GGTAVGTGLN F
Sbjct: 183 KVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGGTAVGTGLNAHPRF 242
Query: 276 DVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGP 335
+A +AEET LPF AEN+F ALAAHD V GA+ T+A +LMKI NDVR L SGP
Sbjct: 243 GELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASGP 302
Query: 336 RCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFK 395
G+GE+ +P NEPGSSIMPGKVNPTQ EALTMV +V GN + GS G+F+LNV+K
Sbjct: 303 YAGIGEITIPANEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNVYK 362
Query: 396 PMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE 437
P++A L S+ LL DA ASF+ + +GI+ N ERI + L +
Sbjct: 363 PVMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQK 404
>pdb|3QBP|A Chain A, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|B Chain B, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|C Chain C, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|D Chain D, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
Length = 478
Score = 399 bits (1025), Expect = e-111, Method: Compositional matrix adjust.
Identities = 217/405 (53%), Positives = 275/405 (67%), Gaps = 16/405 (3%)
Query: 35 TSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGG---ERERMPEPIVRAFGILKKCAA 91
T +R E DT G + VP+ LW AQTQR+++NF I G ER + +RA G+LK A
Sbjct: 17 TEYRIEHDTMGEVRVPAKALWRAQTQRAVENFPISGRGLERAQ-----IRALGLLKGACA 71
Query: 92 KVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAE 150
+VNM+ GL P +AI+ AA E+A+G+ +D FP+ V+QTGSGT SNMN NEVIA+ A
Sbjct: 72 QVNMDLGLLAPEKAEAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNMNTNEVIASIAGA 131
Query: 151 ILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVE 210
VHPND VN SQSSNDTFPT HIAA S LIP L++L ++L +K++E
Sbjct: 132 ------NGVAVHPNDDVNMSQSSNDTFPTATHIAATEAAVSHLIPALEILQDALATKALE 185
Query: 211 FKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLN 270
++ +VK GRTH DA P+TLGQEFSGY Q++ GI+RV LPR+ +LA GGTAVGTGLN
Sbjct: 186 WQSVVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRATLPRLGELAIGGTAVGTGLN 245
Query: 271 TKKGFDVKIASAVAEETSLP-FVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVR 329
+GF VK+ S + +T LP TA N FEA AA D VE SGAL T+A SL KIAND+R
Sbjct: 246 APEGFGVKVVSVLVSQTGLPQLRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDIR 305
Query: 330 LLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHF 389
+GSGP GL E+ LP+ +PGSSIMPGKVNP EA+T V AQVIGN A+ GG+NG F
Sbjct: 306 WMGSGPLTGLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGNDAAVAWGGANGAF 365
Query: 390 ELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 434
ELNV+ PM+A +L S LL + S F + C+ G+ AN E + +L
Sbjct: 366 ELNVYIPMMARNILESFTLLTNVSKLFAQRCIAGLTANAEHLREL 410
>pdb|4ADL|A Chain A, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|B Chain B, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|C Chain C, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|D Chain D, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADM|A Chain A, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|B Chain B, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|C Chain C, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|D Chain D, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
Length = 495
Score = 394 bits (1012), Expect = e-110, Method: Compositional matrix adjust.
Identities = 214/406 (52%), Positives = 275/406 (67%), Gaps = 16/406 (3%)
Query: 34 STSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGG---ERERMPEPIVRAFGILKKCA 90
S ++R E DT G + VP+ LW AQTQR+++NF I G ER + +RA G+LK
Sbjct: 29 SANYRIEHDTMGEVRVPAKALWRAQTQRAVENFPISGRGLERTQ-----IRALGLLKGAC 83
Query: 91 AKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAA 149
A+VN + GL P AI+ AA E+A+G+ +D FP+ V+QTGSGT SNMN NEVIA+ AA
Sbjct: 84 AQVNSDLGLLAPEKADAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNMNTNEVIASIAA 143
Query: 150 EILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSV 209
+G +HPND VN SQSSNDTFPT HIAA + LIP L+ LH++L +K++
Sbjct: 144 ------KGGVTLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKAL 197
Query: 210 EFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGL 269
++ +VK GRTH DA P+TLGQEFSGY Q++ GI+RV CLPR+ +LA GGTAVGTGL
Sbjct: 198 DWHTVVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGELAIGGTAVGTGL 257
Query: 270 NTKKGFDVKIASAVAEETSLP-FVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDV 328
N F V++ + + +T L TA N FEA AA D VE SGAL T+A SL KIAND+
Sbjct: 258 NAPDDFGVRVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDI 317
Query: 329 RLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGH 388
R +GSGP GL E+ LP+ +PGSSIMPGKVNP EA+T V AQVIGN AI GG+NG
Sbjct: 318 RWMGSGPLTGLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGNDAAIAWGGANGA 377
Query: 389 FELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 434
FELNV+ PM+A +L S +LL + S F + C+ G+ AN E + +L
Sbjct: 378 FELNVYIPMMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRL 423
>pdb|3NO9|A Chain A, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|B Chain B, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|C Chain C, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|D Chain D, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
Length = 475
Score = 393 bits (1010), Expect = e-110, Method: Compositional matrix adjust.
Identities = 214/406 (52%), Positives = 275/406 (67%), Gaps = 16/406 (3%)
Query: 34 STSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGG---ERERMPEPIVRAFGILKKCA 90
S ++R E DT G + VP+ LW AQTQR+++NF I G ER + +RA G+LK
Sbjct: 8 SANYRIEHDTMGEVRVPAKALWRAQTQRAVENFPISGRGLERTQ-----IRALGLLKGAC 62
Query: 91 AKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAA 149
A+VN + GL P AI+ AA E+A+G+ +D FP+ V+QTGSGT SNMN NEVIA+ AA
Sbjct: 63 AQVNSDLGLLAPEKADAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNMNTNEVIASIAA 122
Query: 150 EILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSV 209
+G +HPND VN SQSSNDTFPT HIAA + LIP L+ LH++L +K++
Sbjct: 123 ------KGGVTLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKAL 176
Query: 210 EFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGL 269
++ +VK GRTH DA P+TLGQEFSGY Q++ GI+RV CLPR+ +LA GGTAVGTGL
Sbjct: 177 DWHTVVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGELAIGGTAVGTGL 236
Query: 270 NTKKGFDVKIASAVAEETSLP-FVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDV 328
N F V++ + + +T L TA N FEA AA D VE SGAL T+A SL KIAND+
Sbjct: 237 NAPDDFGVRVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDI 296
Query: 329 RLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGH 388
R +GSGP GL E+ LP+ +PGSSIMPGKVNP EA+T V AQVIGN AI GG+NG
Sbjct: 297 RWMGSGPLTGLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGNDAAIAWGGANGA 356
Query: 389 FELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 434
FELNV+ PM+A +L S +LL + S F + C+ G+ AN E + +L
Sbjct: 357 FELNVYIPMMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRL 402
>pdb|4APA|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
Length = 474
Score = 392 bits (1006), Expect = e-109, Method: Compositional matrix adjust.
Identities = 213/406 (52%), Positives = 275/406 (67%), Gaps = 16/406 (3%)
Query: 34 STSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGG---ERERMPEPIVRAFGILKKCA 90
S ++R E DT G + VP+ LW AQTQR+++NF I G ER + +RA G+LK
Sbjct: 7 SANYRIEHDTMGEVRVPAKALWRAQTQRAVENFPISGRGLERTQ-----IRALGLLKGAC 61
Query: 91 AKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAA 149
A+VN + GL P AI+ AA E+A+G+ +D FP+ V+QTGSGT SNMN NEVIA+ AA
Sbjct: 62 AQVNSDLGLLAPEKADAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNMNTNEVIASIAA 121
Query: 150 EILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSV 209
+G +HPND VN SQSSNDTFPT HIAA + LIP L+ LH++L +K++
Sbjct: 122 ------KGGVTLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKAL 175
Query: 210 EFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGL 269
++ +VK GRTH DA P+TLGQEFSGY Q++ GI+RV CLPR+ +LA GGTAVGTGL
Sbjct: 176 DWHTVVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGELAIGGTAVGTGL 235
Query: 270 NTKKGFDVKIASAVAEETSLP-FVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDV 328
N F V++ + + +T L TA N FEA AA D VE SGAL T+A SL KIAND+
Sbjct: 236 NAPDDFGVRVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDI 295
Query: 329 RLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGH 388
R +GSGP GL E+ LP+ +PG+SIMPGKVNP EA+T V AQVIGN AI GG+NG
Sbjct: 296 RWMGSGPLTGLAEIQLPDLQPGASIMPGKVNPVLPEAVTQVAAQVIGNDAAIAWGGANGA 355
Query: 389 FELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 434
FELNV+ PM+A +L S +LL + S F + C+ G+ AN E + +L
Sbjct: 356 FELNVYIPMMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRL 401
>pdb|3RD8|A Chain A, Crystal Structure Of Fumarate Hydratase Class Ii
Mycobacterium Smegmatis
Length = 489
Score = 392 bits (1006), Expect = e-109, Method: Compositional matrix adjust.
Identities = 218/403 (54%), Positives = 269/403 (66%), Gaps = 16/403 (3%)
Query: 37 FREEKDTFGPILVPSDKLWGAQTQRSLQNFDI---GGERERMPEPIVRAFGILKKCAAKV 93
+R E DT G + VP D LW AQTQR+++NF I G ER + +RA G+LK A+V
Sbjct: 29 YRIEHDTMGEVRVPKDALWRAQTQRAVENFPISFRGLERTQ-----IRALGLLKAACAQV 83
Query: 94 NMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEIL 152
N + GL DP AI+ AA E+AEGK +D FP+ V+QTGSGT SNMN NEVIA+ AA
Sbjct: 84 NKDLGLLDPEKADAIIAAAGEIAEGKHDDQFPIDVFQTGSGTSSNMNTNEVIASIAAA-- 141
Query: 153 GHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFK 212
VHPNDHVN SQSSNDTFPT HIAA LIP L+VLH SL +K+ +++
Sbjct: 142 ----NGVTVHPNDHVNMSQSSNDTFPTATHIAATEAAVRHLIPALEVLHASLAAKAKQWR 197
Query: 213 DIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTK 272
+VK GRTH DA P+TLGQEF GY Q++ GI+RV LPR+ +LA GGTAVGTGLN
Sbjct: 198 TVVKSGRTHLMDAVPVTLGQEFGGYARQIEAGIERVKATLPRLGELAIGGTAVGTGLNAP 257
Query: 273 KGFDVKIASAVAEETSLP-FVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLL 331
+GF K+ + ET L TA + FEA AA D VE SGAL T+A SL KIAND+R +
Sbjct: 258 EGFGAKVVEVLVNETGLAELRTAVDSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWM 317
Query: 332 GSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFEL 391
GSGP GL E+ LP+ +PGSSIMPGKVNP EA+T V QV+GN AI GG++G FEL
Sbjct: 318 GSGPLTGLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVACQVVGNDAAIAFGGASGAFEL 377
Query: 392 NVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 434
NV+ PM+A LL S LL + S F + C+ G+ AN ER+ +L
Sbjct: 378 NVYIPMMARNLLESFTLLSNVSRLFAERCIDGLVANEERLREL 420
>pdb|4APB|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
Length = 474
Score = 391 bits (1004), Expect = e-109, Method: Compositional matrix adjust.
Identities = 213/406 (52%), Positives = 274/406 (67%), Gaps = 16/406 (3%)
Query: 34 STSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGG---ERERMPEPIVRAFGILKKCA 90
S ++R E DT G + VP+ LW AQTQR+++NF I G ER + +RA G+LK
Sbjct: 7 SANYRIEHDTMGEVRVPAKALWRAQTQRAVENFPISGRGLERTQ-----IRALGLLKGAC 61
Query: 91 AKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAA 149
A+VN + GL P AI+ AA E+A+G+ +D FP+ V+QTGSGT SNMN NEVIA+ AA
Sbjct: 62 AQVNSDLGLLAPEKADAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNMNTNEVIASIAA 121
Query: 150 EILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSV 209
+G +HPND VN SQSSNDTFPT HIAA + LIP L+ LH++L +K++
Sbjct: 122 ------KGGVTLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKAL 175
Query: 210 EFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGL 269
++ +VK GRTH DA P+TLGQEFSGY Q++ GI+RV CLPR+ +LA GGTAVGTGL
Sbjct: 176 DWHTVVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGELAIGGTAVGTGL 235
Query: 270 NTKKGFDVKIASAVAEETSLP-FVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDV 328
N F V++ + + +T L TA N FEA AA D VE SGAL T+A SL KIAND+
Sbjct: 236 NAPDDFGVRVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDI 295
Query: 329 RLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGH 388
R +GSGP GL E+ LP+ +PG SIMPGKVNP EA+T V AQVIGN AI GG+NG
Sbjct: 296 RWMGSGPLTGLAEIQLPDLQPGCSIMPGKVNPVLPEAVTQVAAQVIGNDAAIAWGGANGA 355
Query: 389 FELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 434
FELNV+ PM+A +L S +LL + S F + C+ G+ AN E + +L
Sbjct: 356 FELNVYIPMMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRL 401
>pdb|3RRP|A Chain A, Crystal Structure Of Fumarate Hydratase Fum From
Mycobacterium Abscessus With Malate Bound
pdb|3RRP|B Chain B, Crystal Structure Of Fumarate Hydratase Fum From
Mycobacterium Abscessus With Malate Bound
Length = 471
Score = 380 bits (976), Expect = e-106, Method: Compositional matrix adjust.
Identities = 214/403 (53%), Positives = 267/403 (66%), Gaps = 14/403 (3%)
Query: 37 FREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGG---ERERMPEPIVRAFGILKKCAAKV 93
+R E DT G + VP++ LW AQTQR+++NF I G ER + +RA G+LK A+V
Sbjct: 11 YRIEHDTMGEVRVPAEALWRAQTQRAVENFPISGRGLERTQ-----IRALGLLKGACAQV 65
Query: 94 NMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEIL 152
N + GL AI+ AAQE+A+GK +D FP+ V+QTGSGT SNMNANEVIA+ AA+
Sbjct: 66 NKDLGLLAAEKADAIIAAAQEIADGKHDDQFPIDVFQTGSGTSSNMNANEVIASIAAQ-- 123
Query: 153 GHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFK 212
+VHPND VN SQSSNDTFPT H+AA LIP L+ L +L +K+ +K
Sbjct: 124 --ATPPVVVHPNDDVNMSQSSNDTFPTATHLAATEAAVRDLIPALEYLQQALATKAKAWK 181
Query: 213 DIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTK 272
+VK GRTH DA P+TLGQEF GY Q++ GI+RV LPR+ +L GGTAVGTGLN
Sbjct: 182 TVVKSGRTHLMDAVPVTLGQEFGGYARQIEAGIERVKATLPRLGELPIGGTAVGTGLNAP 241
Query: 273 KGFDVKIASAVAEETSLP-FVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLL 331
GF K+ + + T L TA + FEA AA D VE SGAL T+AASL KIAND+R +
Sbjct: 242 DGFGAKVVEVLKQSTGLSELKTASDSFEAQAARDGLVEGSGALKTIAASLTKIANDIRWM 301
Query: 332 GSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFEL 391
GSGP GLGE+ LP+ +PGSSIMPGKVNP EA+T V AQVIGN AITVGG +G FEL
Sbjct: 302 GSGPLTGLGEIQLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGNDAAITVGGLSGAFEL 361
Query: 392 NVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 434
NV+ P++A LL S LL + S F CV G+ AN + + L
Sbjct: 362 NVYIPVMARNLLESFTLLANVSRLFVDKCVDGLVANEDHLRTL 404
>pdb|1J3U|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|1J3U|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|3R6Q|A Chain A, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|B Chain B, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|C Chain C, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|D Chain D, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|E Chain E, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|F Chain F, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|G Chain G, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|H Chain H, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6V|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|C Chain C, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|D Chain D, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|E Chain E, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|F Chain F, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|G Chain G, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|H Chain H, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
Length = 468
Score = 333 bits (855), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 176/406 (43%), Positives = 245/406 (60%), Gaps = 5/406 (1%)
Query: 34 STSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKV 93
+T R EKD G +P D +G QT R+ +NF I G R PE ++++ GI+KK AA
Sbjct: 2 NTDVRIEKDFLGEKEIPKDAYYGVQTIRATENFPITGYRIH-PE-LIKSLGIVKKSAALA 59
Query: 94 NMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEIL 152
NME GL D +G+ I++AA EV EGK ND F + Q G+GT NMNANEVIANRA E++
Sbjct: 60 NMEVGLLDKEVGQYIVKAADEVIEGKWNDQFIVDPIQGGAGTSINMNANEVIANRALELM 119
Query: 153 GHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEF 211
G ++G + PN HVN SQS+ND FPT HIA N +LI K + K+ EF
Sbjct: 120 GEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSLLN-QLIETTKYMQQEFMKKADEF 178
Query: 212 KDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNT 271
++K+GRTH QDA P+ LGQEF Y + I+R+ +Y + G TAVGTGLN
Sbjct: 179 AGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNA 238
Query: 272 KKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLL 331
+ + +A+ + P +A++ +A D + E S AL ++ KIAND+RL+
Sbjct: 239 DPEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLM 298
Query: 332 GSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFEL 391
SGPR GL E++LP +PGSSIMPGKVNP E + V QV GN + IT G FEL
Sbjct: 299 ASGPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFEL 358
Query: 392 NVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE 437
NV +P++ L+ S+ ++ + SF +NC++GI+AN ER+ + + +
Sbjct: 359 NVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEK 404
>pdb|3R6Y|A Chain A, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|B Chain B, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|C Chain C, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|D Chain D, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|E Chain E, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|F Chain F, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|G Chain G, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|H Chain H, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
Length = 401
Score = 333 bits (855), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 243/402 (60%), Gaps = 5/402 (1%)
Query: 34 STSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKV 93
+T R EKD G +P D +G QT R+ +NF I G R PE ++++ GI+KK AA
Sbjct: 2 NTDVRIEKDFLGEKEIPKDAYYGVQTIRATENFPITGYRIH-PE-LIKSLGIVKKSAALA 59
Query: 94 NMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEIL 152
NME GL D +G+ I++AA EV EGK ND F + Q G+GT NMNANEVIANRA E++
Sbjct: 60 NMEVGLLDKEVGQYIVKAADEVIEGKWNDQFIVDPIQGGAGTSINMNANEVIANRALELM 119
Query: 153 GHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEF 211
G ++G + PN HVN SQS+ND FPT HIA N +LI K + K+ EF
Sbjct: 120 GEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSLLN-QLIETTKYMQQEFMKKADEF 178
Query: 212 KDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNT 271
++K+GRTH QDA P+ LGQEF Y + I+R+ +Y + G TAVGTGLN
Sbjct: 179 AGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNA 238
Query: 272 KKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLL 331
+ + +A+ + P +A++ +A D + E S AL ++ KIAND+RL+
Sbjct: 239 DPEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLM 298
Query: 332 GSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFEL 391
SGPR GL E++LP +PGSSIMPGKVNP E + V QV GN + IT G FEL
Sbjct: 299 ASGPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFEL 358
Query: 392 NVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISK 433
NV +P++ L+ S+ ++ + SF +NC++GI+AN ER+ +
Sbjct: 359 NVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKE 400
>pdb|3OCF|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|B Chain B, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|C Chain C, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|D Chain D, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
Length = 478
Score = 299 bits (766), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 167/397 (42%), Positives = 234/397 (58%), Gaps = 7/397 (1%)
Query: 38 REEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEY 97
R E+D+ G +P D +G QT R+++NF + +VRA ++KK AA N +
Sbjct: 24 RREQDSLGERDIPMDAYFGIQTLRAVENFSLSDVALNHIPALVRALAMVKKAAATANYKL 83
Query: 98 GLDPAIG-KAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKR 156
P AI+ A ++ +G L + F + V+Q G+GT SNMNANEVIANRA E LG R
Sbjct: 84 RQLPEPKYAAIVAACDDIIDGLLMEQFVVDVFQGGAGTSSNMNANEVIANRALEHLGRPR 143
Query: 157 GE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIV 215
G+ + +HPND VN SQS+ND +PT + +A + N ++ L L + +K EF ++
Sbjct: 144 GDYQTIHPNDDVNMSQSTNDVYPTAVRLALLLSQN-QVQTALHRLIAAFEAKGREFATVI 202
Query: 216 KIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRV--ICCLPRMYQLAQGGTAVGTGLNTKK 273
KIGRT QDA P+TLGQEF + ++ R+ + L R L GGTA+GT +N
Sbjct: 203 KIGRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFREVNL--GGTAIGTRINASH 260
Query: 274 GFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGS 333
+ + +++ + + N EA AFV SG L +A L KIAND+RLL S
Sbjct: 261 AYAEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSS 320
Query: 334 GPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNV 393
GPR GLGE+ LP +PGSSIMPGKVNP E++ VC QVIGN + +T+ +G +LN
Sbjct: 321 GPRSGLGEIRLPAVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQLNA 380
Query: 394 FKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRER 430
F+P+I +L S+RLLG A + + CV GI+AN ER
Sbjct: 381 FEPLIVYNILSSMRLLGRAMTNLAERCVDGIEANVER 417
>pdb|3OCE|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|B Chain B, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|C Chain C, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|D Chain D, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
Length = 474
Score = 298 bits (763), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 167/397 (42%), Positives = 234/397 (58%), Gaps = 7/397 (1%)
Query: 38 REEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEY 97
R E+D+ G +P D +G QT R+++NF + +VRA ++KK AA N +
Sbjct: 7 RREQDSLGERDIPMDAYFGIQTLRAVENFSLSDVALNHIPALVRALAMVKKAAATANYKL 66
Query: 98 GLDPAIG-KAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKR 156
P AI+ A ++ +G L + F + V+Q G+GT SNMNANEVIANRA E LG R
Sbjct: 67 RQLPEPKYAAIVAACDDIIDGLLMEQFVVDVFQGGAGTSSNMNANEVIANRALEHLGRPR 126
Query: 157 GE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIV 215
G+ + +HPND VN SQS+ND +PT + +A + N ++ L L + +K EF ++
Sbjct: 127 GDYQTIHPNDDVNMSQSTNDVYPTAVRLALLLSQN-QVQTALHRLIAAFEAKGREFATVI 185
Query: 216 KIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRV--ICCLPRMYQLAQGGTAVGTGLNTKK 273
KIGRT QDA P+TLGQEF + ++ R+ + L R L GGTA+GT +N
Sbjct: 186 KIGRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFREVNL--GGTAIGTRINASH 243
Query: 274 GFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGS 333
+ + +++ + + N EA AFV SG L +A L KIAND+RLL S
Sbjct: 244 AYAEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSS 303
Query: 334 GPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNV 393
GPR GLGE+ LP +PGSSIMPGKVNP E++ VC QVIGN + +T+ +G +LN
Sbjct: 304 GPRSGLGEIRLPAVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQLNA 363
Query: 394 FKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRER 430
F+P+I +L S+RLLG A + + CV GI+AN ER
Sbjct: 364 FEPLIVYNILSSMRLLGRAMTNLAERCVDGIEANVER 400
>pdb|1JSW|A Chain A, Native L-Aspartate Ammonia Lyase
pdb|1JSW|B Chain B, Native L-Aspartate Ammonia Lyase
pdb|1JSW|C Chain C, Native L-Aspartate Ammonia Lyase
pdb|1JSW|D Chain D, Native L-Aspartate Ammonia Lyase
Length = 478
Score = 291 bits (746), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 165/400 (41%), Positives = 236/400 (59%), Gaps = 6/400 (1%)
Query: 34 STSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGER-ERMPEPIVRAFGILKKCAAK 92
S + R E+D G VP+D +G T R+++NF I + +PE VR ++KK AA
Sbjct: 2 SNNIRIEEDLLGTREVPADAYYGVHTLRAIENFYISNNKISDIPE-FVRGMVMVKKAAAM 60
Query: 93 VNMEYGLDP-AIGKAIMQAAQEVAE-GKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAE 150
N E P ++ AI+ A EV GK D FP+ V+Q G+GT NMN NEV+AN E
Sbjct: 61 ANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLE 120
Query: 151 ILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSV 209
++GH++GE + ++PNDHVN+ QS+ND +PT IA + +L+ + L K+V
Sbjct: 121 LMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAV-YSSLIKLVDAINQLREGFERKAV 179
Query: 210 EFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGL 269
EF+DI+K+GRT QDA P+TLGQEF ++ +K + + + ++ G TA+GTGL
Sbjct: 180 EFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAIGTGL 239
Query: 270 NTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVR 329
NT K + +AE T P V AE+ EA + A+V GAL +A + KI ND+R
Sbjct: 240 NTPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLR 299
Query: 330 LLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHF 389
LL SGPR GL E+ LPE + GSSIMP KVNP E + VC +VIGN +T+ G
Sbjct: 300 LLSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQL 359
Query: 390 ELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRE 429
+LNV +P+I + S+ +L +A + + C+ GI AN+E
Sbjct: 360 QLNVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKE 399
>pdb|3C8T|A Chain A, Crystal Structure Of Fumarate Lyase From Mesorhizobium Sp.
Bnc1
Length = 451
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 98/223 (43%), Gaps = 16/223 (7%)
Query: 170 SQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLT 229
+Q DT TV+ I + SR I +++ +L + + +D GRTH Q A P+T
Sbjct: 104 TQDIMDT-ATVLQIRDGLALISRRIESVR---KALAALARNHRDTPMAGRTHLQHALPVT 159
Query: 230 LGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSL 289
G + + + + R+ PR+ + G + +G DV+ A +
Sbjct: 160 FGYKAAVWLSAFDRHAARLEEISPRVLVVEFSGASGTLASLGTRGLDVQRELARELNLGV 219
Query: 290 PFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--EN 347
P +T + A DA ET L V+ SL K+A D+ ++ + LGE+ P +
Sbjct: 220 PSITWHS------ARDAVAETVQFLALVSGSLGKLAMDISIMMT---TELGEVAEPFVRH 270
Query: 348 EPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFE 390
SS MP K NP CE L + A+++ NH + FE
Sbjct: 271 RGASSTMPQKQNPVSCE-LILAGARIVRNHATSMLDAMIHDFE 312
>pdb|1RE5|A Chain A, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|B Chain B, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|C Chain C, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|D Chain D, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
Length = 450
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 93/214 (43%), Gaps = 16/214 (7%)
Query: 166 HVNRSQSSNDTFPT--VMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQ 223
+V+ +S D T V+ + A++ + +L L ++L ++++ D +GRT Q
Sbjct: 99 YVHLGATSQDAMDTGLVLQLRDALDL---IEADLGKLADTLSQQALKHADTPLVGRTWLQ 155
Query: 224 DATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAV 283
ATP+TLG + +G + R+ PR+ L GG + K V A A+
Sbjct: 156 HATPVTLGMKLAGVLGALTRHRQRLQELRPRLLVLQFGGASGSLAALGSKAMPV--AEAL 213
Query: 284 AEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELI 343
AE+ L E + D VE + L VA SL K D+ LL + GE+
Sbjct: 214 AEQ--LKLTLPEQPWH--TQRDRLVEFASVLGLVAGSLGKFGRDISLL---MQTEAGEVF 266
Query: 344 LPE--NEPGSSIMPGKVNPTQCEALTMVCAQVIG 375
P + GSS MP K NP L +V G
Sbjct: 267 EPSAPGKGGSSTMPHKRNPVGAAVLIGAATRVPG 300
>pdb|4EEI|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
pdb|4EEI|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
Length = 438
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 98/201 (48%), Gaps = 22/201 (10%)
Query: 188 ETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGI-- 245
++ S +I +L+ L +SL +K+ E K+I+ +GR+H A P++ GQ+F G + K +
Sbjct: 108 DSMSYVIKDLEALCDSLLTKAEETKEIITMGRSHGMFAEPMSFGQKFLGAYVEFKRRLKD 167
Query: 246 --DRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAA 303
D L + A G + T + KK D I EE S + + + ++
Sbjct: 168 LKDFQKDGLTVQFSGAVGNYCILTTEDEKKAAD--ILGLPVEEVSTQVIPRDRIAKLISI 225
Query: 304 HDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELI--LPENEPGSSIMPGKVNPT 361
H +A+++ ++A ++R L R + E+ + + GSS MP K NP
Sbjct: 226 H----------GLIASAIERLAVEIRHLH---RSDVFEVYEGFSKGQKGSSTMPHKKNPI 272
Query: 362 QCEALTMVCAQVIGNHVAITV 382
E LT + A+++ +HV+I +
Sbjct: 273 STENLTGM-ARMLRSHVSIAL 292
>pdb|2E9F|A Chain A, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|C Chain C, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|D Chain D, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|B Chain B, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
Length = 462
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 72/167 (43%), Gaps = 15/167 (8%)
Query: 218 GRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAV-GTGLNTKKGFD 276
G TH Q A P+ L F Y +K R+ R+ + G A+ GTG + F
Sbjct: 156 GYTHLQRAQPVLLAHWFLAYYEMLKRDAGRLEDAKERLNESPLGAAALAGTGFPIDRHFT 215
Query: 277 VKIASAVAEETSLPF-VTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGP 335
+ L F N +A+A+ D +E ALN L ++A ++ +L S
Sbjct: 216 AR---------ELGFKAPMRNSLDAVASRDFALEVLSALNIGMLHLSRMAEEL-ILYSTE 265
Query: 336 RCGLGELILPEN-EPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAIT 381
G E+ P+ GSSIMP K NP E + +V+G V ++
Sbjct: 266 EFGFVEV--PDAFATGSSIMPQKKNPDILELIRAKAGRVLGAFVGLS 310
>pdb|2QGA|B Chain B, Plasmodium Vivax Adenylosuccinate Lyase Pv003765 With Amp
Bound
pdb|2QGA|C Chain C, Plasmodium Vivax Adenylosuccinate Lyase Pv003765 With Amp
Bound
Length = 465
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 92/228 (40%), Gaps = 31/228 (13%)
Query: 150 EILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSV 209
E L + + E ++ ++V+ +S D N +IP L+ + L +V
Sbjct: 99 EKLKNSKREDLLKIKEYVHYLCTSEDINNVAYATCLKACLNDVVIPCLEKIMLKLKDLAV 158
Query: 210 EFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYG---IDRVICCLP--------RMYQL 258
E+ + + RTH Q A+ T G+E + + ++ + I RV C +++
Sbjct: 159 EYSHVPLLSRTHGQPASSTTFGKEMANFYARIHHHVGVIRRVKVCAKFNGAVGNFNAHKV 218
Query: 259 AQGGTA-VGT-GLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNT 316
A T V T GL KK F++ + + + HD E L
Sbjct: 219 ASKDTDWVNTIGLFLKKHFNLTYSIYCTQ---------------IQDHDYICELCDGLAR 263
Query: 317 VAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCE 364
+L+ + D+ L S L +L + E E GSS MP KVNP E
Sbjct: 264 ANGTLIDLCVDIWLYISN---NLLKLKVKEKEVGSSTMPHKVNPIDFE 308
>pdb|1Q5N|A Chain A, Crystal Structure Of Beta-Carboxy-Cis,Cis-Muconate
Cycloisomerase (Cmle) From Acinetobacter Calcoaceticus
Sp. Adp1
Length = 454
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 11/157 (7%)
Query: 206 SKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAV 265
S++ ++ V +GRT Q A P+TLG + + + + K +DR+ R+ +AQ G AV
Sbjct: 142 SQAQTYRHQVMMGRTWLQQALPITLGHKLARWASAFKRDLDRINAIKARVL-VAQLGGAV 200
Query: 266 GTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIA 325
G+ + + + + A A++ L E D VE + L + ++ K+A
Sbjct: 201 GSLASLQDQGSI-VVEAYAKQLKLGQTACTWHGE----RDRIVEIASVLGIITGNVGKMA 255
Query: 326 NDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNP 360
D L+ + + E+ P + GSS MP K NP
Sbjct: 256 RDWSLM---MQTEIAEVFEPTAKGRGGSSTMPHKRNP 289
>pdb|1F1O|A Chain A, Structural Studies Of Adenylosuccinate Lyases
Length = 431
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 78/183 (42%), Gaps = 15/183 (8%)
Query: 188 ETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDR 247
+ N L+ +L+ + + K+ E K V +GRTH A P T G + + + ++K ++R
Sbjct: 108 QANDILLKDLERFVDIIKEKAKEHKYTVMMGRTHGVHAEPTTFGLKLALWHEEMKRNLER 167
Query: 248 VICCLPRMYQLAQGGTAVGT---GLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAH 304
++ A+ G VG + T D + V E+ L + H
Sbjct: 168 --------FKQAKAGIEVGKISGAVGTYANIDPFVEQYVCEKLGLKAAPISTQTLQRDRH 219
Query: 305 DAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCE 364
++ T L +A S+ K A ++R L + E + + GSS MP K NP E
Sbjct: 220 ADYMAT---LALIATSIEKFAVEIRGLQKSETREVEEF-FAKGQKGSSAMPHKRNPIGSE 275
Query: 365 ALT 367
+T
Sbjct: 276 NMT 278
>pdb|2HVG|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Plasmodium Vivax
pdb|2HVG|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Plasmodium Vivax
Length = 482
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 91/228 (39%), Gaps = 31/228 (13%)
Query: 150 EILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSV 209
E L + + E ++ ++V+ +S D N +IP L+ + L +V
Sbjct: 116 EKLKNSKREDLLKIKEYVHYLCTSEDINNVAYATCLKACLNDVVIPCLEKIXLKLKDLAV 175
Query: 210 EFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYG---IDRVICCLP--------RMYQL 258
E+ + + RTH Q A+ T G+E + + ++ + I RV C +++
Sbjct: 176 EYSHVPLLSRTHGQPASSTTFGKEXANFYARIHHHVGVIRRVKVCAKFNGAVGNFNAHKV 235
Query: 259 AQGGTA-VGT-GLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNT 316
A T V T GL KK F++ + + + HD E L
Sbjct: 236 ASKDTDWVNTIGLFLKKHFNLTYSIYCTQ---------------IQDHDYICELCDGLAR 280
Query: 317 VAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCE 364
+L+ + D+ L S L +L + E E GSS P KVNP E
Sbjct: 281 ANGTLIDLCVDIWLYISN---NLLKLKVKEKEVGSSTXPHKVNPIDFE 325
>pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3U|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 431
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 113/283 (39%), Gaps = 53/283 (18%)
Query: 172 SSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLG 231
+S+D T +A +E L+ +LK + L + +K IGRTH A P + G
Sbjct: 93 TSSDVLDTANSLAL-VEAGKILLESLKEFCDVLWEVANRYKHTPTIGRTHGVHAEPTSFG 151
Query: 232 QEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPF 291
+ G+ +++K + R L + V G KI+ AV ++P
Sbjct: 152 LKVLGWYSEMKRNVQR----------LERAIEEVSYG---------KISGAVGNYANVPP 192
Query: 292 VTAENKFEALAAHDAFVETS-----------GALNTVAASLMKIANDVRLLGSGPRCGLG 340
E L V T L VAA + +IA ++R L R +
Sbjct: 193 EVEEKALSYLGLKPEPVSTQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQ---RTEVL 249
Query: 341 ELILP--ENEPGSSIMPGKVNPTQCEALT----MVCAQVIGNHVAITVGG----SNGHFE 390
E+ P + + GSS MP K NP CE LT M+ A V + I + S+ E
Sbjct: 250 EVEEPFRKGQRGSSAMPHKKNPITCERLTGLSRMMRAYVDPSLENIALWHERDISHSSVE 309
Query: 391 LNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISK 433
VF P L + + +A+ N VR ++ N ER+ K
Sbjct: 310 RYVF-PDATQTLYYMI-----VTAT---NVVRNMKVNEERMKK 343
>pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3C|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 429
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 113/283 (39%), Gaps = 53/283 (18%)
Query: 172 SSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLG 231
+S+D T +A +E L+ +LK + L + +K IGRTH A P + G
Sbjct: 92 TSSDVLDTANSLAL-VEAGKILLESLKEFCDVLWEVANRYKHTPTIGRTHGVHAEPTSFG 150
Query: 232 QEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPF 291
+ G+ +++K + R L + V G KI+ AV ++P
Sbjct: 151 LKVLGWYSEMKRNVQR----------LERAIEEVSYG---------KISGAVGNYANVPP 191
Query: 292 VTAENKFEALAAHDAFVETS-----------GALNTVAASLMKIANDVRLLGSGPRCGLG 340
E L V T L VAA + +IA ++R L R +
Sbjct: 192 EVEEKALSYLGLKPEPVSTQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQ---RTEVL 248
Query: 341 ELILP--ENEPGSSIMPGKVNPTQCEALT----MVCAQVIGNHVAITVGG----SNGHFE 390
E+ P + + GSS MP K NP CE LT M+ A V + I + S+ E
Sbjct: 249 EVEEPFRKGQRGSSAMPHKKNPITCERLTGLSRMMRAYVDPSLENIALWHERDISHSSVE 308
Query: 391 LNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISK 433
VF P L + + +A+ N VR ++ N ER+ K
Sbjct: 309 RYVF-PDATQTLYYMI-----VTAT---NVVRNMKVNEERMKK 342
>pdb|1DOF|A Chain A, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|B Chain B, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|C Chain C, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|D Chain D, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
Length = 403
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 101/227 (44%), Gaps = 35/227 (15%)
Query: 166 HVNRSQSSNDTFPT-----VMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRT 220
+V+ +SND T + AA++ +R + + L S + ++K + +GRT
Sbjct: 89 YVHYGATSNDIIDTAWALLIRRALAAVKEKARAVGD------QLASMARKYKTLEMVGRT 142
Query: 221 HTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIA 280
H Q A P+TLG +F+ Y ++ ++ L + A+ G AVGT + + +++
Sbjct: 143 HGQWAEPITLGFKFANYYYELYIACRQL--ALAEEFIRAKIGGAVGT-MASWGELGLEVR 199
Query: 281 SAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLG 340
VAE LP + +A ++F + AL +AA ++A ++R
Sbjct: 200 RRVAERLGLPHHVITTQ---VAPRESFAVLASALALMAAVFERLAVEIR----------- 245
Query: 341 ELILPE------NEPGSSIMPGKVNPTQCEALTMVCAQVIG-NHVAI 380
EL PE GSS MP K NPT E + + V HVA
Sbjct: 246 ELSRPEIGEVVEGGGGSSAMPHKANPTASERIVSLARYVRALTHVAF 292
>pdb|3GZH|A Chain A, Crystal Structure Of Phosphate-Bound Adenylosuccinate
Lyase From E. Coli
Length = 482
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 75/183 (40%), Gaps = 28/183 (15%)
Query: 193 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 252
++P + L + + +V+++DI + RTH Q ATP T+G+E + V Y ++R L
Sbjct: 169 ILPYWRQLIDGIKDLAVQYRDIPLLSRTHGQPATPSTIGKEMAN----VAYRMERQYRQL 224
Query: 253 PRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEE--TSL-----PFVTAENKFEALAAHD 305
++ L + AVG + +EE TSL P+ T + HD
Sbjct: 225 NQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQWNPYTT------QIEPHD 278
Query: 306 AFVETSGALNTVAASLMKIANDVR----LLGSGPRCGLGELILPENEPGSSIMPGKVNPT 361
E + L+ DV L + GE+ GSS MP KVNP
Sbjct: 279 YIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEI-------GSSTMPHKVNPI 331
Query: 362 QCE 364
E
Sbjct: 332 DFE 334
>pdb|1TJ7|A Chain A, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
pdb|1TJ7|B Chain B, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
Length = 457
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 86/219 (39%), Gaps = 12/219 (5%)
Query: 158 EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKI 217
+K+ ++ +S ND T + + +T S L+ + L ++L + +D V
Sbjct: 94 DKVGQLGKKLHTGRSRNDQVATDLKLWCK-DTVSELLTANRQLQSALVETAQNNQDAVMP 152
Query: 218 GRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDV 277
G TH Q A P+T Y + R+ L R+ + +G G +++
Sbjct: 153 GYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRL-----DVSPLGCGALAGTAYEI 207
Query: 278 KIASAVAEETSLPFVTA-ENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPR 336
L F +A N ++++ D +E A L + A D+ +G
Sbjct: 208 DREQLAG---WLGFASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTG-E 263
Query: 337 CGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIG 375
G EL GSS+MP K NP E + C +V G
Sbjct: 264 AGFVELS-DRVTSGSSLMPQKKNPDALELIRGKCGRVQG 301
>pdb|2PFM|A Chain A, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
pdb|2PFM|B Chain B, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
Length = 444
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 77/180 (42%), Gaps = 9/180 (5%)
Query: 188 ETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDR 247
+ N ++ +L+ + L +K+ E K + +GRTH A P T G + + ++K ++R
Sbjct: 119 QANEIILKDLENFVSILANKAKEHKYTIMMGRTHGVHAEPTTFGLKLGLWYEEMKRNVER 178
Query: 248 VICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAF 307
++ + AVGT N D + V E L + H +
Sbjct: 179 FKQA-ANTVRVGKLSGAVGTYAN----IDPFVEKYVCENLGLEAAPISTQTLQRDRHAHY 233
Query: 308 VETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALT 367
+ T L +A S+ K+A ++R L + E + + GSS MP K NP E +T
Sbjct: 234 MST---LALIATSIEKMAVEIRGLQKSETREVEE-AFAKGQKGSSAMPHKRNPIGSENMT 289
>pdb|2X75|A Chain A, Staphylococcus Aureus Adenylosuccinate Lyase
Length = 431
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 95/229 (41%), Gaps = 18/229 (7%)
Query: 147 RAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHS 206
+ +E LG +R K VH +S D T + + N + +L+ + L
Sbjct: 76 QVSETLGEER--KWVH------YGLTSTDVVDTALSFVIK-QANDIIEKDLERFIDVLAE 126
Query: 207 KSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVG 266
K+ +K + +GRTH A P T G + + + T+++ + R + ++ + AVG
Sbjct: 127 KAKNYKYTLMMGRTHGVHAEPTTFGVKMALWYTEMQRNLQRFKQVREEI-EVGKMSGAVG 185
Query: 267 TGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIAN 326
T N +I S V + + + H ++ T L +A SL K A
Sbjct: 186 TFANIPP----EIESYVCKHLGIGTAPVSTQTLQRDRHAYYIAT---LALIATSLEKFAV 238
Query: 327 DVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIG 375
++R L + E + + GSS MP K NP E +T + + G
Sbjct: 239 EIRNLQKTETREVEEA-FAKGQKGSSAMPHKRNPIGSENITGISRVIRG 286
>pdb|4EFC|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Trypanosoma Brucei, Tb427tmp.160.5560
pdb|4EFC|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Trypanosoma Brucei, Tb427tmp.160.5560
Length = 472
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 90/212 (42%), Gaps = 24/212 (11%)
Query: 162 HPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTH 221
H + V+ +S D T + + + +P L + SL SK V++ D+ + RTH
Sbjct: 128 HVTEFVHFGLTSQDINNTAIPMMIRDAIVTLYLPALDGIIGSLTSKLVDW-DVPMLARTH 186
Query: 222 TQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGT---------GLNTK 272
Q A+P L +EF + +++ R +C +P + G A G +N +
Sbjct: 187 GQPASPTNLAKEFVVWIERLREQ-RRQLCEVPTT---GKFGGATGNFNAHLVAYPSVNWR 242
Query: 273 KGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLG 332
D+ +A + + EN ++ LA A + L+ + L+ + DV
Sbjct: 243 AFADMFLAKYLGLKRQQATTQIEN-YDHLA---ALCDACARLHVI---LIDMCRDVWQYI 295
Query: 333 SGPRCGLGELILPENEPGSSIMPGKVNPTQCE 364
S G + + E E GSS MP KVNP E
Sbjct: 296 S---MGFFKQKVKEGEVGSSTMPHKVNPIDFE 324
>pdb|2PTQ|A Chain A, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171n With Bound Amp And Fumarate
pdb|2PTQ|B Chain B, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171n With Bound Amp And Fumarate
Length = 462
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 75/183 (40%), Gaps = 28/183 (15%)
Query: 193 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 252
++P + L + L +V+++DI + RT+ Q ATP T+G+E + V Y ++R L
Sbjct: 143 ILPYWRQLIDGLKDLAVQYRDIPLLSRTNGQPATPSTIGKEMAN----VAYRMERQYRQL 198
Query: 253 PRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEE--TSL-----PFVTAENKFEALAAHD 305
++ L + AVG + +EE TSL P+ T + HD
Sbjct: 199 NQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQWNPYTT------QIEPHD 252
Query: 306 AFVETSGALNTVAASLMKIANDVR----LLGSGPRCGLGELILPENEPGSSIMPGKVNPT 361
E + L+ DV L + GE+ GSS MP KVNP
Sbjct: 253 YIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEI-------GSSTMPHKVNPI 305
Query: 362 QCE 364
E
Sbjct: 306 DFE 308
>pdb|2PTR|A Chain A, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171a With Bound Adenylosuccinate Substrate
pdb|2PTR|B Chain B, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171a With Bound Adenylosuccinate Substrate
Length = 462
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 74/183 (40%), Gaps = 28/183 (15%)
Query: 193 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 252
++P + L + L +V+++DI + RT Q ATP T+G+E + V Y ++R L
Sbjct: 143 ILPYWRQLIDGLKDLAVQYRDIPLLSRTAGQPATPSTIGKEMAN----VAYRMERQYRQL 198
Query: 253 PRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEE--TSL-----PFVTAENKFEALAAHD 305
++ L + AVG + +EE TSL P+ T + HD
Sbjct: 199 NQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQWNPYTT------QIEPHD 252
Query: 306 AFVETSGALNTVAASLMKIANDVR----LLGSGPRCGLGELILPENEPGSSIMPGKVNPT 361
E + L+ DV L + GE+ GSS MP KVNP
Sbjct: 253 YIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEI-------GSSTMPHKVNPI 305
Query: 362 QCE 364
E
Sbjct: 306 DFE 308
>pdb|2PTS|A Chain A, Crystal Structure Of Wild Type Escherichia Coli
Adenylosuccinate Lyase
Length = 462
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 73/183 (39%), Gaps = 28/183 (15%)
Query: 193 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 252
++P + L + L +V+++DI + RTH Q ATP T+G+E + V Y +R L
Sbjct: 143 ILPYWRQLIDGLKDLAVQYRDIPLLSRTHGQPATPSTIGKEXAN----VAYRXERQYRQL 198
Query: 253 PRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEE--TSL-----PFVTAENKFEALAAHD 305
++ L + AVG + +EE TSL P+ T + HD
Sbjct: 199 NQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQWNPYTT------QIEPHD 252
Query: 306 AFVETSGALNTVAASLMKIANDVR----LLGSGPRCGLGELILPENEPGSSIMPGKVNPT 361
E + L+ DV L + GE+ GSS P KVNP
Sbjct: 253 YIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEI-------GSSTXPHKVNPI 305
Query: 362 QCE 364
E
Sbjct: 306 DFE 308
>pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|B Chain B, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|C Chain C, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|D Chain D, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 103/251 (41%), Gaps = 26/251 (10%)
Query: 134 TQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRL 193
TQS+ + I R E++G G+ + +S N+ T + + ++++ +
Sbjct: 82 TQSDEDIQTAIERRLKELIGDIAGK--------LQTGRSRNEQVVTDLKLL--LKSSISV 131
Query: 194 IPN--LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICC 251
I L+++ + ++E DI+ G TH Q A P+ Q + + +R+
Sbjct: 132 ISTHLLQLIKTLVERAAIEI-DIIMPGYTHLQKALPIRWSQFLLSHAVALTRDSERLGEV 190
Query: 252 LPRMYQLAQG-GTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVET 310
R+ L G G G L D ++ + + TS+ N +A++ D VE
Sbjct: 191 KKRITVLPLGSGVLAGNPLE----IDRELLRSELDMTSITL----NSIDAISERDFVVEL 242
Query: 311 SGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCEALTMV 369
+ L K+A D+ + + G + L + GSS++P K NP E +
Sbjct: 243 ISVATLLMIHLSKLAEDLIIFST---TEFGFVTLSDAYSTGSSLLPQKKNPDSLELIRSK 299
Query: 370 CAQVIGNHVAI 380
+V G AI
Sbjct: 300 AGRVFGRLAAI 310
>pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck
pdb|1AUW|B Chain B, H91n Delta 2 Crystallin From Duck
pdb|1AUW|C Chain C, H91n Delta 2 Crystallin From Duck
pdb|1AUW|D Chain D, H91n Delta 2 Crystallin From Duck
Length = 468
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 104/252 (41%), Gaps = 30/252 (11%)
Query: 135 QSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLI 194
QS+ + N R E++G G+ H RS+ ND T + + M+ + +I
Sbjct: 85 QSDEDINTANERRLKELIGDIAGKL------HTGRSR--NDQVVTDLKLF--MKNSLSII 134
Query: 195 PN--LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 252
L+++ + ++E D++ G TH Q A P+ Q + + +R+
Sbjct: 135 STHLLQLIKTLVERAAIEI-DVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVK 193
Query: 253 PRMYQLAQG-GTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETS 311
R+ L G G G L+ D ++ + E S+ N +A++ D VE
Sbjct: 194 KRINVLPLGSGALAGNPLD----IDREMLRSELEFASISL----NSMDAISERDFVVEFL 245
Query: 312 GALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEP---GSSIMPGKVNPTQCEALTM 368
+ L K+A D+ ++ S G L +++ GSS+MP K NP E +
Sbjct: 246 SFATLLMIHLSKMAEDL-IIYSTSEFGF----LTDSDAFSTGSSLMPQKKNPDSLELIRS 300
Query: 369 VCAQVIGNHVAI 380
+V G +I
Sbjct: 301 KAGRVFGRLASI 312
>pdb|1HY0|A Chain A, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 105/260 (40%), Gaps = 32/260 (12%)
Query: 125 LVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIA 184
+VV Q+ Q+ ANE R E++G G+ H RS++ V +
Sbjct: 79 IVVTQSDEDIQT---ANE---RRLKELIGDIAGKL------HTGRSRNEQ----VVTDLK 122
Query: 185 AAMETNSRLIPN--LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVK 242
M+ + +I L+++ + ++E D++ G TH Q A P+ Q + +
Sbjct: 123 LFMKNSLSIISTHLLQLIKTLVERAAIEI-DVILPGYTHLQKAQPIRWSQFLLSHAVALT 181
Query: 243 YGIDRVICCLPRMYQLAQG-GTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEAL 301
+R+ R+ L G G G L+ D ++ + E S+ N +A+
Sbjct: 182 RDSERLGEVKKRINVLPLGSGALAGNPLD----IDREMLRSELEFASISL----NSMDAI 233
Query: 302 AAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNP 360
+ D VE + L K+A D+ + + G L L + GSS+MP K NP
Sbjct: 234 SERDFVVEFLSVATLLLIHLSKMAEDLIIYSTSE---FGFLTLSDAFSTGSSLMPQKKNP 290
Query: 361 TQCEALTMVCAQVIGNHVAI 380
E + +V G +I
Sbjct: 291 DSLELIRSKSGRVFGRLASI 310
>pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|B Chain B, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|D Chain D, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
Length = 468
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 102/250 (40%), Gaps = 26/250 (10%)
Query: 135 QSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLI 194
QS+ + + R E++G G+ H RS+ ND T + + M+ + +I
Sbjct: 85 QSDEDIHTANERRLKELIGDIAGKL------HTGRSR--NDQVVTDLKLF--MKNSLSII 134
Query: 195 PN--LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 252
L+++ + ++E D++ G TH Q A P+ Q + + +R+
Sbjct: 135 STHLLQLIKTLVERAAIEI-DVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVK 193
Query: 253 PRMYQLAQG-GTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETS 311
R+ L G G G L+ D ++ + E S+ N +A++ D VE
Sbjct: 194 KRINVLPLGSGALAGNPLD----IDREMLRSELEFASISL----NSMDAISERDFVVEFL 245
Query: 312 GALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCEALTMVC 370
+ L K+A D+ + + G L L + GSS+MP K NP E +
Sbjct: 246 SFATLLMIHLSKMAEDLIIYSTSE---FGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKA 302
Query: 371 AQVIGNHVAI 380
+V G +I
Sbjct: 303 GRVFGRLASI 312
>pdb|1U15|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|B Chain B, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|C Chain C, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|D Chain D, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U16|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm) In Complex With Sulfate
Length = 472
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 68/170 (40%), Gaps = 13/170 (7%)
Query: 213 DIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQG-GTAVGTGLNT 271
D++ G TH Q A P+ Q + + +R+ R+ L G G G L+
Sbjct: 152 DVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLD- 210
Query: 272 KKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLL 331
D ++ + E S+ N +A++ D VE + L K+A D+ +
Sbjct: 211 ---IDREMLRSELEFASISL----NSMDAISERDFVVEFLSVATLLLIHLSKMAEDLIIY 263
Query: 332 GSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAI 380
+ G L L + GSS+MP K NP E + +V G +I
Sbjct: 264 STSE---FGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASI 310
>pdb|1XWO|A Chain A, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|B Chain B, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|C Chain C, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|D Chain D, Crystal Structrue Of Goose Delta Crystallin
Length = 465
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 103/260 (39%), Gaps = 30/260 (11%)
Query: 128 WQTGSG--TQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 185
W G TQS+ + + R E++G G+ +N +S N+ T + +
Sbjct: 73 WSKGVFVVTQSDEDIHTANERRLKELIGDIAGK--------LNTGRSRNEQVVTDLKLF- 123
Query: 186 AMETNSRLIPN--LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKY 243
M+ + +I L+++ + ++E D++ G TH Q A P+ Q + +
Sbjct: 124 -MKNSLSVISTHLLQLIKTLVERAAIEI-DVILPGYTHLQKAQPIRWSQFLLSHAVALTR 181
Query: 244 GIDRVICCLPRMYQLAQG-GTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAE-NKFEAL 301
+R+ R+ L G G G L+ + + L F + N +A+
Sbjct: 182 DSERLGEVKRRINVLPLGSGALAGNPLDIDREM---------LRSELDFASISLNSMDAI 232
Query: 302 AAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNP 360
+ D VE + L K+A D+ + + G L L + GSS+MP K NP
Sbjct: 233 SERDFVVEFLSVATLLMIHLSKMAEDLIIYSTSE---FGFLTLSDAFSTGSSLMPQKKNP 289
Query: 361 TQCEALTMVCAQVIGNHVAI 380
E + +V G +I
Sbjct: 290 DSLELIRSKAGRVFGRLASI 309
>pdb|1K7W|A Chain A, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|B Chain B, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|C Chain C, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
Length = 468
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 102/250 (40%), Gaps = 26/250 (10%)
Query: 135 QSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLI 194
QS+ + + R E++G G+ H RS+ ND T + + M+ + +I
Sbjct: 85 QSDEDIHTANERRLKELIGDIAGKL------HTGRSR--NDQVVTDLKLF--MKNSLSII 134
Query: 195 PN--LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 252
L+++ + ++E D++ G TH Q A P+ Q + + +R+
Sbjct: 135 STHLLQLIKTLVERAAIEI-DVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVK 193
Query: 253 PRMYQLAQG-GTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETS 311
R+ L G G G L+ D ++ + E S+ N +A++ D VE
Sbjct: 194 KRINVLPLGSGALAGNPLD----IDREMLRSELEFASISL----NSMDAISERDFVVEFL 245
Query: 312 GALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCEALTMVC 370
+ L K+A D+ + + G L L + G+S+MP K NP E +
Sbjct: 246 SFATLLMIHLSKMAEDLIIYSTSE---FGFLTLSDAFSTGASLMPQKKNPDSLELIRSKA 302
Query: 371 AQVIGNHVAI 380
+V G +I
Sbjct: 303 GRVFGRLASI 312
>pdb|1TJU|A Chain A, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|B Chain B, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|C Chain C, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|D Chain D, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
Length = 474
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 102/250 (40%), Gaps = 26/250 (10%)
Query: 135 QSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLI 194
QS+ + + R E++G G+ H RS+ ND T + + M+ + +I
Sbjct: 85 QSDEDIHTANERRLKELIGDIAGKL------HTGRSR--NDQVVTDLKLF--MKNSLSII 134
Query: 195 PN--LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 252
L+++ + ++E D++ G +H Q A P+ Q + + +R+
Sbjct: 135 STHLLQLIKTLVERAAIEI-DVILPGYSHLQKAQPIRWSQFLLSHAVALTRDSERLGEVK 193
Query: 253 PRMYQLAQG-GTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETS 311
R+ L G G G L+ D ++ + E S+ N +A++ D VE
Sbjct: 194 KRINVLPLGSGALAGNPLD----IDREMLRSELEFASISL----NSMDAISERDFVVEFL 245
Query: 312 GALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCEALTMVC 370
+ L K+A D+ + + G L L + GSS+MP K NP E +
Sbjct: 246 SFATLLMIHLSKMAEDLIIYSTSE---FGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKA 302
Query: 371 AQVIGNHVAI 380
+V G +I
Sbjct: 303 GRVFGRLASI 312
>pdb|1TJV|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJW|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
Length = 474
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 101/250 (40%), Gaps = 26/250 (10%)
Query: 135 QSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLI 194
QS+ + + R E++G G+ H RS+ ND T + + M+ + +I
Sbjct: 85 QSDEDIHTANERRLKELIGDIAGKL------HTGRSR--NDQVVTDLKLF--MKNSLSII 134
Query: 195 PN--LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 252
L+++ + ++E D++ G H Q A P+ Q + + +R+
Sbjct: 135 STHLLQLIKTLVERAAIEI-DVILPGYDHLQKAQPIRWSQFLLSHAVALTRDSERLGEVK 193
Query: 253 PRMYQLAQG-GTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETS 311
R+ L G G G L+ D ++ + E S+ N +A++ D VE
Sbjct: 194 KRINVLPLGSGALAGNPLD----IDREMLRSELEFASISL----NSMDAISERDFVVEFL 245
Query: 312 GALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCEALTMVC 370
+ L K+A D+ + + G L L + GSS+MP K NP E +
Sbjct: 246 SFATLLMIHLSKMAEDLIIYSTSE---FGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKA 302
Query: 371 AQVIGNHVAI 380
+V G +I
Sbjct: 303 GRVFGRLASI 312
>pdb|1YIS|A Chain A, Structural Genomics Of Caenorhabditis Elegans:
Adenylosuccinate Lyase
Length = 478
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 52/273 (19%), Positives = 112/273 (41%), Gaps = 36/273 (13%)
Query: 183 IAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLG----------- 231
+ A ++ ++ + + L + S++ K++V +GRTH Q A+ +T+G
Sbjct: 117 LIAYRDSIDHILKRFATVIDRLAAFSLKNKEVVTVGRTHYQTASLVTVGKRGVLWAQELL 176
Query: 232 ---QEFSGYTTQVKY-GIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEET 287
Q S + + ++ GI L G + L+ ++ + A +
Sbjct: 177 XAFQSLSEFRDKXRFRGIKGATGTQDSFLTLFAGDESKVEALD-------ELVTKKANFS 229
Query: 288 SLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP-- 345
+ +T + + F +L+ + A+ K+ D+R+L + GEL+ P
Sbjct: 230 NRFLITGQTYSRQQDSQLVF-----SLSLLGAAAKKVCTDIRVLQA-----FGELLEPFE 279
Query: 346 ENEPGSSIMPGKVNPTQCEALTMVCAQVIGN-HVAITVGGSNGHFELNVFKPMIASGLLH 404
+++ GSS P K NP + E + ++I A+T+ G E + L+
Sbjct: 280 KDQIGSSAXPYKKNPXKSERCCALSRKLINAPQEALTILADQG-LERTLDDSAGRRXLIP 338
Query: 405 SLRLLGDASASFEKNCVRGIQANRERISKLLHE 437
+ L +A + +N G+ + + K++ +
Sbjct: 339 DVLLTAEALLTTLQNIFEGLSVQTDNVKKIVED 371
>pdb|4FLC|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
Query: 308 VETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCEA 365
+E L ++ AS+ KI D+RLL + L E+ P + + GSS MP K NP + E
Sbjct: 252 IEVLSVLASLGASVHKICTDIRLLAN-----LKEMEEPFEKQQIGSSAMPYKRNPMRSE- 305
Query: 366 LTMVCAQVIGNHVAITV 382
C + H+ V
Sbjct: 306 ----CCCSLARHLMTLV 318
>pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|B Chain B, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|D Chain D, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 447
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 104/259 (40%), Gaps = 28/259 (10%)
Query: 128 WQTGSGT--QSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 185
W G QS+ + + R E++G G+ +N +S ND T + +
Sbjct: 58 WSKGVFVVKQSDEDIHTANERRLKELIGDIAGK--------LNTGRSRNDQVVTDLKLF- 108
Query: 186 AMETNSRLIPN--LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKY 243
M+ + +I L+++ + ++E D++ G T+ Q A P+ Q + +
Sbjct: 109 -MKNSLSIISTHLLQLIKTLVERAAIEI-DVILPGYTNLQKAQPIRWSQFLLSHAVALTR 166
Query: 244 GIDRVICCLPRMYQLAQG-GTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALA 302
+R+ R+ L G G G L+ D ++ + E S+ N +A++
Sbjct: 167 DSERLGEVKKRINVLPLGSGALAGNPLD----IDREMLRSELEFASISL----NSMDAIS 218
Query: 303 AHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPT 361
D VE + L K+A D+ + + G L L + GSS+MP K NP
Sbjct: 219 ERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSE---FGFLTLSDAFSTGSSLMPQKKNPD 275
Query: 362 QCEALTMVCAQVIGNHVAI 380
E + +V G +I
Sbjct: 276 SLELIRSKSGRVFGRLASI 294
>pdb|2VD6|A Chain A, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|B Chain B, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|C Chain C, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|D Chain D, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate
Length = 503
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 308 VETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCE 364
+E L ++ AS+ KI D+RLL + L E+ P + + GSS MP K NP + E
Sbjct: 271 IEVLSVLASLGASVHKICTDIRLLAN-----LKEMEEPFEKQQIGSSAMPYKRNPMRSE 324
>pdb|2J91|A Chain A, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|B Chain B, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|C Chain C, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|D Chain D, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
Length = 503
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 308 VETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCE 364
+E L ++ AS+ KI D+RLL + L E+ P + + GSS MP K NP + E
Sbjct: 271 IEVLSVLASLGASVHKICTDIRLLAN-----LKEMEEPFEKQQIGSSAMPYKRNPMRSE 324
>pdb|4FFX|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 308 VETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCE 364
+E L ++ AS+ KI D+RLL + L E+ P + + GSS MP K NP + E
Sbjct: 252 IEVLSVLASLGASVHKICTDIRLLAN-----LKEMEEPFEKQQIGSSAMPYKRNPMRSE 305
>pdb|3BHG|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Legionella Pneumophila
Length = 459
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 58/156 (37%), Gaps = 14/156 (8%)
Query: 213 DIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVI-CCLPRMYQLAQGGTAVGTGLNT 271
D+ + RTH Q ATP T G+E + ++K ++ +P + A G
Sbjct: 166 DVAXLSRTHGQPATPTTXGKELVNFVARLKRPQQQLAEVLIPAKFNGAVGNYNAHVAAYP 225
Query: 272 KKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVR-- 329
+ + A+ V L F + E HD E S + L+ D+
Sbjct: 226 EVDWRKHCANFVT-SLGLSFNAYTTQIE---PHDGIAEVSQIXVRINNILLDYTQDIWSY 281
Query: 330 -LLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCE 364
LG + + E E GSS P KVNP E
Sbjct: 282 ISLGYFKQKTIAE------EVGSSTXPHKVNPIDFE 311
>pdb|4A2C|A Chain A, Crystal Structure Of Galactitol-1-Phosphate Dehydrogenase
From Escherichia Coli
pdb|4A2C|B Chain B, Crystal Structure Of Galactitol-1-Phosphate Dehydrogenase
From Escherichia Coli
Length = 346
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Query: 227 PLTLGQEFSGYTTQVKYGIDRV-----ICCLPRM 255
P+TLG EFSGY V G+D + + C+P +
Sbjct: 54 PITLGHEFSGYIDAVGSGVDDLHPGDAVACVPLL 87
>pdb|1K62|A Chain A, Crystal Structure Of The Human Argininosuccinate Lyase
Q286r Mutant
pdb|1K62|B Chain B, Crystal Structure Of The Human Argininosuccinate Lyase
Q286r Mutant
Length = 464
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 102/269 (37%), Gaps = 26/269 (9%)
Query: 107 IMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDH 166
I+ +VAE F L S + ANE R E++G G+ H
Sbjct: 63 ILHGLDKVAEEWAQGTFKL-----NSNDEDIHTANE---RRLKELIGATAGKL------H 108
Query: 167 VNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDAT 226
RS+ ND T + + +T S L L L ++ ++ +D++ G TH Q A
Sbjct: 109 TGRSR--NDQVVTDLRLWMR-QTCSTLSGLLWELIRTMVDRAEAERDVLFPGYTHLQRAQ 165
Query: 227 PLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEE 286
P+ + + +R++ R+ L G A+ G D ++ A E
Sbjct: 166 PIRWSHWILSHAVALTRDSERLLEVRKRINVLPLGSGAIA---GNPLGVDRELLRA---E 219
Query: 287 TSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPE 346
+ +T N +A + D E + L ++A D+ L + + +
Sbjct: 220 LNFGAITL-NSMDATSERDFVAEFLFWRSLCMTHLSRMAEDLILYCTKEFSFVQ--LSDA 276
Query: 347 NEPGSSIMPGKVNPTQCEALTMVCAQVIG 375
GSS+MP K NP E + +V G
Sbjct: 277 YSTGSSLMPRKKNPDSLELIRSKAGRVFG 305
>pdb|1AOS|A Chain A, Human Argininosuccinate Lyase
pdb|1AOS|B Chain B, Human Argininosuccinate Lyase
Length = 464
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 102/269 (37%), Gaps = 26/269 (9%)
Query: 107 IMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDH 166
I+ +VAE F L S + ANE R E++G G+ H
Sbjct: 63 ILHGLDKVAEEWAQGTFKL-----NSNDEDIHTANE---RRLKELIGATAGKL------H 108
Query: 167 VNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDAT 226
RS+ ND T + + +T S L L L ++ ++ +D++ G TH Q A
Sbjct: 109 TGRSR--NDQVVTDLRLWMR-QTCSTLSGLLWELIRTMVDRAEAERDVLFPGYTHLQRAQ 165
Query: 227 PLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEE 286
P+ + + +R++ R+ L G A+ G D ++ A E
Sbjct: 166 PIRWSHWILSHAVALTRDSERLLEVRKRINVLPLGSGAIA---GNPLGVDRELLRA---E 219
Query: 287 TSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPE 346
+ +T N +A + D E + L ++A D+ L + + +
Sbjct: 220 LNFGAITL-NSMDATSERDFVAEFLFWRSLCMTHLSRMAEDLILYCTKEFSFVQ--LSDA 276
Query: 347 NEPGSSIMPGKVNPTQCEALTMVCAQVIG 375
GSS+MP K NP E + +V G
Sbjct: 277 YSTGSSLMPQKKNPDSLELIRSKAGRVFG 305
>pdb|2FEL|A Chain A, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|B Chain B, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|D Chain D, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|C Chain C, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|E Chain E, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|F Chain F, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|G Chain G, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|H Chain H, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|I Chain I, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|J Chain J, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|L Chain L, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|K Chain K, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|A Chain A, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|B Chain B, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|D Chain D, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|C Chain C, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|E Chain E, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|F Chain F, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|H Chain H, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|G Chain G, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|I Chain I, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|J Chain J, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|L Chain L, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|K Chain K, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
Length = 359
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 305 DAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCE 364
D E + L+ V +L K D+ L+ +G I GSS MP K NP E
Sbjct: 232 DGIAEFANLLSLVTGTLGKFGQDIALMAE-----IGSEIRLSGGGGSSAMPHKQNPVNAE 286
Query: 365 ALTMVC 370
L +
Sbjct: 287 TLVTLA 292
>pdb|1JLH|A Chain A, Human Glucose-6-Phosphate Isomerase
pdb|1JLH|B Chain B, Human Glucose-6-Phosphate Isomerase
pdb|1JLH|C Chain C, Human Glucose-6-Phosphate Isomerase
pdb|1JLH|D Chain D, Human Glucose-6-Phosphate Isomerase
Length = 558
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 376 NHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERI 431
NH ++T+ ++GH ++ K ++ + +R+L D + S RG++A RER+
Sbjct: 38 NHFSLTLNTNHGHILVDYSKNLVTEDV---MRMLVDLAKS------RGVEAARERM 84
>pdb|3DOH|A Chain A, Crystal Structure Of A Thermostable Esterase
pdb|3DOH|B Chain B, Crystal Structure Of A Thermostable Esterase
pdb|3DOI|A Chain A, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
pdb|3DOI|B Chain B, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
Length = 380
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 100 DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEK 159
DP G I + + +PLVV+ G+G + N +V NR A + R +
Sbjct: 151 DPETGVEIPYRLFVPKDVNPDRKYPLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQ- 209
Query: 160 IVHP 163
+VHP
Sbjct: 210 VVHP 213
>pdb|1IAT|A Chain A, Crystal Structure Of Human Phosphoglucose
IsomeraseNEUROLEUKINAUTOCRINE MOTILITY FACTORMATURATION
FACTOR
Length = 557
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 376 NHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERI 431
NH ++T+ ++GH ++ K ++ + +R+L D + S RG++A RER+
Sbjct: 37 NHFSLTLNTNHGHILVDYSKNLVTEDV---MRMLVDLAKS------RGVEAARERM 83
>pdb|1IRI|A Chain A, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1IRI|B Chain B, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1IRI|C Chain C, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1IRI|D Chain D, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1JIQ|A Chain A, Crystal Structure Of Human Autocrine Motility Factor
pdb|1JIQ|B Chain B, Crystal Structure Of Human Autocrine Motility Factor
pdb|1JIQ|C Chain C, Crystal Structure Of Human Autocrine Motility Factor
pdb|1JIQ|D Chain D, Crystal Structure Of Human Autocrine Motility Factor
pdb|1NUH|A Chain A, The Crystal Structure Of Human Phosphoglucose Isomerase
Complexed With 5-Phosphoarabinonate
Length = 558
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 376 NHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERI 431
NH ++T+ ++GH ++ K ++ + +R+L D + S RG++A RER+
Sbjct: 38 NHFSLTLNTNHGHILVDYSKNLVTEDV---MRMLVDLAKS------RGVEAARERM 84
>pdb|2G0W|A Chain A, Crystal Structure Of A Putative Sugar Isomerase (Lmo2234)
From Listeria Monocytogenes At 1.70 A Resolution
pdb|2G0W|B Chain B, Crystal Structure Of A Putative Sugar Isomerase (Lmo2234)
From Listeria Monocytogenes At 1.70 A Resolution
Length = 296
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 73 ERMPEP-IVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAE--GKLNDHFPLVVWQ 129
E++PE I+ A G L A ++ + P G A +QAA VAE G+ N W
Sbjct: 128 EKIPEEQIIVALGELCDRAEELIIGLEFXPYSGVADLQAAWRVAEACGRDNAQLICDTWH 187
Query: 130 TGSGTQSNMNANEVIANRAAEI 151
Q+ + V A+R I
Sbjct: 188 WARANQTAESIKNVPADRIVSI 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,622,259
Number of Sequences: 62578
Number of extensions: 510064
Number of successful extensions: 1151
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1009
Number of HSP's gapped (non-prelim): 78
length of query: 439
length of database: 14,973,337
effective HSP length: 102
effective length of query: 337
effective length of database: 8,590,381
effective search space: 2894958397
effective search space used: 2894958397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)