RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 013614
(439 letters)
>gnl|CDD|215069 PLN00134, PLN00134, fumarate hydratase; Provisional.
Length = 458
Score = 801 bits (2071), Expect = 0.0
Identities = 345/396 (87%), Positives = 362/396 (91%), Gaps = 2/396 (0%)
Query: 44 FGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPA 102
GPI VP+DKLWGAQTQRSLQNF+IGGERERMPEPIVRAFGI+KK AAKVNMEYG LDP
Sbjct: 1 MGPIQVPADKLWGAQTQRSLQNFEIGGERERMPEPIVRAFGIVKKAAAKVNMEYGLLDPD 60
Query: 103 IGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEK-IV 161
IGKAIMQAA EVAEGKL+DHFPLVVWQTGSGTQ+NMNANEVIANRAAEILG GEK V
Sbjct: 61 IGKAIMQAADEVAEGKLDDHFPLVVWQTGSGTQTNMNANEVIANRAAEILGGPVGEKSPV 120
Query: 162 HPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTH 221
HPNDHVNRSQSSNDTFPT MHIAAA E +SRLIP LK LH SL +KS EFKDIVKIGRTH
Sbjct: 121 HPNDHVNRSQSSNDTFPTAMHIAAATEIHSRLIPALKELHESLRAKSFEFKDIVKIGRTH 180
Query: 222 TQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIAS 281
QDA PLTLGQEFSGY TQVKYG++RV C LPR+Y+LAQGGTAVGTGLNTKKGFD KIA+
Sbjct: 181 LQDAVPLTLGQEFSGYATQVKYGLNRVQCTLPRLYELAQGGTAVGTGLNTKKGFDEKIAA 240
Query: 282 AVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGE 341
AVAEET LPFVTA NKFEALAAHDAFVE SGALNTVA SLMKIAND+RLLGSGPRCGLGE
Sbjct: 241 AVAEETGLPFVTAPNKFEALAAHDAFVELSGALNTVAVSLMKIANDIRLLGSGPRCGLGE 300
Query: 342 LILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASG 401
L LPENEPGSSIMPGKVNPTQCEALTMVCAQV+GNHVAITVGGS GHFELNVFKP+IA
Sbjct: 301 LNLPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAITVGGSAGHFELNVFKPLIAYN 360
Query: 402 LLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE 437
LLHS+RLLGDASASF KNCVRGI+ANRERISKLLHE
Sbjct: 361 LLHSIRLLGDASASFRKNCVRGIEANRERISKLLHE 396
>gnl|CDD|234779 PRK00485, fumC, fumarate hydratase; Reviewed.
Length = 464
Score = 788 bits (2039), Expect = 0.0
Identities = 271/406 (66%), Positives = 312/406 (76%), Gaps = 4/406 (0%)
Query: 34 STSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKV 93
R EKD+ G + VP+D LWGAQTQRSL+NF IGGER MP ++RA +LKK AA+V
Sbjct: 1 MMETRIEKDSMGEVEVPADALWGAQTQRSLENFPIGGER--MPRELIRALALLKKAAARV 58
Query: 94 NMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEIL 152
N E G LD AI+ AA EV GK +DHFPL VWQTGSGTQSNMN NEVIANRA+E+L
Sbjct: 59 NAELGLLDAEKADAIVAAADEVIAGKHDDHFPLDVWQTGSGTQSNMNVNEVIANRASELL 118
Query: 153 GHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEF 211
G + G K VHPNDHVN SQSSNDTFPT MHIAA + RL+P L+ L ++L +K+ EF
Sbjct: 119 GGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAVLAIVERLLPALEHLRDTLAAKAEEF 178
Query: 212 KDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNT 271
DIVKIGRTH QDATPLTLGQEFSGY Q+++GI+R+ LP +Y+LA GGTAVGTGLN
Sbjct: 179 ADIVKIGRTHLQDATPLTLGQEFSGYAAQLEHGIERIEAALPHLYELALGGTAVGTGLNA 238
Query: 272 KKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLL 331
GF ++A +AE T LPFVTA NKFEALAAHDA VE SGAL T+A SLMKIAND+R L
Sbjct: 239 HPGFAERVAEELAELTGLPFVTAPNKFEALAAHDALVEASGALKTLAVSLMKIANDIRWL 298
Query: 332 GSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFEL 391
SGPRCGLGE+ LPENEPGSSIMPGKVNPTQCEALTMVCAQV+GN A+T GS G+FEL
Sbjct: 299 ASGPRCGLGEISLPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNDAAVTFAGSQGNFEL 358
Query: 392 NVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE 437
NVFKP+IA L S+RLL DA SF +CV GI+ NRERI +LL
Sbjct: 359 NVFKPVIAYNFLQSIRLLADAMRSFADHCVVGIEPNRERIKELLER 404
>gnl|CDD|176465 cd01362, Fumarase_classII, Class II fumarases. This subgroup
contains Escherichia coli fumarase C, human
mitochondrial fumarase, and related proteins. It is a
member of the Lyase class I family. Members of this
family for the most part catalyze similar
beta-elimination reactions in which a C-N or C-O bond is
cleaved with the release of fumarate as one of the
products. These proteins are active as tetramers. The
four active sites of the homotetrameric enzyme are each
formed by residues from three different subunits.
Fumarase catalyzes the reversible hydration/dehydration
of fumarate to L-malate during the Krebs cycle.
Length = 455
Score = 778 bits (2012), Expect = 0.0
Identities = 279/402 (69%), Positives = 317/402 (78%), Gaps = 4/402 (0%)
Query: 38 REEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEY 97
R EKD+ G + VP+D LWGAQTQRSL+NF IGGER MP ++RA G+LKK AA+ N E
Sbjct: 1 RIEKDSMGEVEVPADALWGAQTQRSLENFPIGGER--MPRELIRALGLLKKAAAQANAEL 58
Query: 98 G-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKR 156
G LD AI+QAA EV GKL+DHFPLVVWQTGSGTQ+NMN NEVIANRA E+LG
Sbjct: 59 GLLDEEKADAIVQAADEVIAGKLDDHFPLVVWQTGSGTQTNMNVNEVIANRAIELLGGVL 118
Query: 157 GEK-IVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIV 215
G K VHPNDHVN SQSSNDTFPT MHIAAA+ RL+P LK L ++L +K+ EFKDIV
Sbjct: 119 GSKKPVHPNDHVNMSQSSNDTFPTAMHIAAALALQERLLPALKHLIDALDAKADEFKDIV 178
Query: 216 KIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGF 275
KIGRTH QDATPLTLGQEFSGY Q+++ I R+ LPR+Y+LA GGTAVGTGLN GF
Sbjct: 179 KIGRTHLQDATPLTLGQEFSGYAAQLEHAIARIEAALPRLYELALGGTAVGTGLNAHPGF 238
Query: 276 DVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGP 335
K+A+ +AE T LPFVTA NKFEALAAHDA VE SGAL T+A SLMKIAND+R LGSGP
Sbjct: 239 AEKVAAELAELTGLPFVTAPNKFEALAAHDALVEASGALKTLAVSLMKIANDIRWLGSGP 298
Query: 336 RCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFK 395
RCGLGEL LPENEPGSSIMPGKVNPTQCEALTMV AQV+GN AIT+ GS+G+FELNVFK
Sbjct: 299 RCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNDAAITIAGSSGNFELNVFK 358
Query: 396 PMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE 437
P+I LL S+RLL DA SF CV GI+ NRERI++LL
Sbjct: 359 PVIIYNLLQSIRLLADACRSFADKCVAGIEPNRERIAELLER 400
>gnl|CDD|176468 cd01596, Aspartase_like, aspartase (L-aspartate ammonia-lyase) and
fumarase class II enzymes. This group contains
aspartase (L-aspartate ammonia-lyase), fumarase class II
enzymes, and related proteins. It is a member of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. Aspartase catalyzes the
reversible deamination of aspartic acid. Fumarase
catalyzes the reversible hydration/dehydration of
fumarate to L-malate during the Krebs cycle.
Length = 450
Score = 735 bits (1900), Expect = 0.0
Identities = 243/401 (60%), Positives = 286/401 (71%), Gaps = 3/401 (0%)
Query: 38 REEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEY 97
R EKD+ G + VP+D +GAQTQR+L+NF I GER MP ++RA ++KK AA N E
Sbjct: 1 RIEKDSLGEVEVPADAYYGAQTQRALENFPISGER--MPPELIRALALVKKAAALANAEL 58
Query: 98 G-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKR 156
G LD AI+QA EV GKL+D FPL VWQTGSGT +NMN NEVIANRA E+LG K+
Sbjct: 59 GLLDEEKADAIVQACDEVIAGKLDDQFPLDVWQTGSGTSTNMNVNEVIANRALELLGGKK 118
Query: 157 GEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVK 216
G+ VHPND VN SQSSND FP HIAAA+ RL+P L+ L ++L +K+ EF DIVK
Sbjct: 119 GKYPVHPNDDVNNSQSSNDDFPPAAHIAAALALLERLLPALEQLQDALDAKAEEFADIVK 178
Query: 217 IGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFD 276
IGRTH QDA PLTLGQEFSGY Q+ I R+ L R+ +L GGTAVGTGLN G+
Sbjct: 179 IGRTHLQDAVPLTLGQEFSGYAAQLARDIARIEAALERLRELNLGGTAVGTGLNAPPGYA 238
Query: 277 VKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPR 336
K+A+ +AE T LPFVTA N FEA AAHDA VE SGAL T+A SL KIAND+RLL SGPR
Sbjct: 239 EKVAAELAELTGLPFVTAPNLFEATAAHDALVEVSGALKTLAVSLSKIANDLRLLSSGPR 298
Query: 337 CGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKP 396
GLGE+ LP N+PGSSIMPGKVNP EA+ MV AQVIGN AIT+ GS G ELNVFKP
Sbjct: 299 AGLGEINLPANQPGSSIMPGKVNPVIPEAVNMVAAQVIGNDTAITMAGSAGQLELNVFKP 358
Query: 397 MIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE 437
+IA LL S+RLL +A SF CV GI+AN ER + +
Sbjct: 359 VIAYNLLQSIRLLANACRSFRDKCVEGIEANEERCKEYVEN 399
>gnl|CDD|223192 COG0114, FumC, Fumarase [Energy production and conversion].
Length = 462
Score = 728 bits (1881), Expect = 0.0
Identities = 270/405 (66%), Positives = 311/405 (76%), Gaps = 4/405 (0%)
Query: 35 TSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVN 94
++R E DT G + VP+D LWGAQTQRSL+NF IGGE+ MP I+RA G+LKK AA+VN
Sbjct: 1 MTYRIEHDTMGEVEVPADALWGAQTQRSLENFPIGGEK--MPREIIRALGLLKKAAAQVN 58
Query: 95 MEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 153
+ G LDP AI+ AA EV GK +DHFPL VWQTGSGTQSNMN NEVIANRA+E+LG
Sbjct: 59 ADLGLLDPEKADAIIAAADEVLAGKHDDHFPLDVWQTGSGTQSNMNVNEVIANRASELLG 118
Query: 154 HKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFK 212
+ G K VHPNDHVN SQSSNDTFPT MHIAA + +RLIP LK L +L +K+ EF
Sbjct: 119 GELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAVLAVVNRLIPALKHLIKTLAAKAEEFA 178
Query: 213 DIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTK 272
D+VKIGRTH QDATPLTLGQEFSGY Q+++ ++R+ LP +Y+LA GGTAVGTGLN
Sbjct: 179 DVVKIGRTHLQDATPLTLGQEFSGYAAQLEHALERIEASLPHLYELAIGGTAVGTGLNAH 238
Query: 273 KGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLG 332
F K+A +AE T LPFVTA NKFEALAAHDA VE SGAL T+A SLMKIAND+R LG
Sbjct: 239 PEFGEKVAEELAELTGLPFVTAPNKFEALAAHDALVEASGALRTLAVSLMKIANDIRWLG 298
Query: 333 SGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELN 392
SGPRCGLGE+ LPENEPGSSIMPGKVNPTQCEALTMV AQVIGN AI GS G+FELN
Sbjct: 299 SGPRCGLGEIELPENEPGSSIMPGKVNPTQCEALTMVAAQVIGNDAAIAFAGSQGNFELN 358
Query: 393 VFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE 437
VFKP+IA L S+RLL DA SF +C+ GI+ N ERI +LL
Sbjct: 359 VFKPVIAYNFLQSVRLLADAMRSFADHCIVGIEPNEERIKELLER 403
>gnl|CDD|130052 TIGR00979, fumC_II, fumarate hydratase, class II. Putative
fumarases from several species (Mycobacterium
tuberculosis, Streptomyces coelicolor, Pseudomonas
aeruginosa) branch deeply, although within the same
branch of a phylogenetic tree rooted by aspartate
ammonia-lyase sequences, and score between the trusted
and noise cutoffs [Energy metabolism, TCA cycle].
Length = 458
Score = 671 bits (1733), Expect = 0.0
Identities = 273/403 (67%), Positives = 314/403 (77%), Gaps = 4/403 (0%)
Query: 37 FREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNME 96
FR EKD+ G I VP+DK WGAQTQRSL+NF IG E+MP ++ AF ILKK AA VN +
Sbjct: 1 FRIEKDSMGEIQVPADKYWGAQTQRSLENFKIG--TEKMPLELIHAFAILKKAAAIVNED 58
Query: 97 YG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHK 155
G LD AI+QAA E+ GKL+DHFPLVVWQTGSGTQSNMN NEVIANRA E+LG K
Sbjct: 59 LGKLDAKKADAIVQAADEILAGKLDDHFPLVVWQTGSGTQSNMNVNEVIANRAIELLGGK 118
Query: 156 RGEK-IVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDI 214
G K VHPNDHVN+SQSSNDTFPT MHIAA + ++LIP L+ L +L +KS EF I
Sbjct: 119 LGSKQPVHPNDHVNKSQSSNDTFPTAMHIAAVLAIKNQLIPALENLKKTLDAKSKEFAHI 178
Query: 215 VKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKG 274
VKIGRTH QDATPLTLGQEFSGY Q+++G++R+ LP +Y+LA GGTAVGTGLNT G
Sbjct: 179 VKIGRTHLQDATPLTLGQEFSGYVAQLEHGLERIAYSLPHLYELAIGGTAVGTGLNTHPG 238
Query: 275 FDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSG 334
FD K+A +A+ET LPFVTA NKFEALAAHDA VE GAL T+AASLMKIAND+R LGSG
Sbjct: 239 FDEKVAEEIAKETGLPFVTAPNKFEALAAHDAIVEAHGALKTLAASLMKIANDIRWLGSG 298
Query: 335 PRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVF 394
PRCGLGEL +PENEPGSSIMPGKVNPTQCEALTMVC QV+GN I GS G+FELNVF
Sbjct: 299 PRCGLGELFIPENEPGSSIMPGKVNPTQCEALTMVCVQVMGNDATIGFAGSQGNFELNVF 358
Query: 395 KPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE 437
KP+I L S+RLL DA SF +CV GI+ N+ERI +LL+
Sbjct: 359 KPVIIYNFLQSVRLLSDAMESFRDHCVVGIEPNKERIQQLLNN 401
>gnl|CDD|237031 PRK12273, aspA, aspartate ammonia-lyase; Provisional.
Length = 472
Score = 509 bits (1314), Expect = e-180
Identities = 183/405 (45%), Positives = 244/405 (60%), Gaps = 3/405 (0%)
Query: 34 STSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKV 93
+ R EKD G VP+D +G T R+++NF I G + ++RA ++KK AA
Sbjct: 2 MMNTRIEKDLLGEREVPADAYYGIHTLRAVENFPISGVKISDYPELIRALAMVKKAAALA 61
Query: 94 NMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEIL 152
N E G LD AI+ A E+ GKL+D F + V Q G+GT +NMNANEVIANRA E+L
Sbjct: 62 NKELGLLDEEKADAIVAACDEILAGKLHDQFVVDVIQGGAGTSTNMNANEVIANRALELL 121
Query: 153 GHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEF 211
GH++GE + VHPNDHVN SQS+ND +PT + IA + +L+ L+ L + +K+ EF
Sbjct: 122 GHEKGEYQYVHPNDHVNMSQSTNDAYPTAIRIALLLSLR-KLLDALEQLQEAFEAKAKEF 180
Query: 212 KDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNT 271
DI+K+GRT QDA P+TLGQEF Y + R+ + ++ G TA+GTGLN
Sbjct: 181 ADILKMGRTQLQDAVPMTLGQEFGAYAVALAEDRKRLYRAAELLREVNLGATAIGTGLNA 240
Query: 272 KKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLL 331
G+ + +AE T LP V AE+ EA AFVE SGAL +A L KI ND+RLL
Sbjct: 241 PPGYIELVVEKLAEITGLPLVPAEDLIEATQDTGAFVEVSGALKRLAVKLSKICNDLRLL 300
Query: 332 GSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFEL 391
SGPR GL E+ LP + GSSIMPGKVNP E + VC QVIGN +T+ G EL
Sbjct: 301 SSGPRAGLNEINLPAVQAGSSIMPGKVNPVIPEVVNQVCFQVIGNDTTVTMAAEAGQLEL 360
Query: 392 NVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLH 436
NV +P+IA L S+ +L +A + + C+ GI AN ER + +
Sbjct: 361 NVMEPVIAYNLFESISILTNACRTLREKCIDGITANEERCREYVE 405
>gnl|CDD|176462 cd01357, Aspartase, Aspartase. This subgroup contains Escherichia
coli aspartase (L-aspartate ammonia-lyase), Bacillus
aspartase and related proteins. It is a member of the
Lyase class I family, which includes both aspartase
(L-aspartate ammonia-lyase) and fumarase class II
enzymes. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. Aspartase catalyzes the reversible deamination
of aspartic acid.
Length = 450
Score = 502 bits (1294), Expect = e-177
Identities = 189/395 (47%), Positives = 252/395 (63%), Gaps = 5/395 (1%)
Query: 38 REEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEY 97
R E D G VP+D +G QT R+L+NF I G + + ++RA ++KK AA N E
Sbjct: 1 RIEHDLLGEREVPADAYYGIQTLRALENFPISGLK--IHPELIRALAMVKKAAALANAEL 58
Query: 98 G-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKR 156
G LD +AI++A E+ GKL+D F + V Q G+GT +NMNANEVIANRA E+LGH++
Sbjct: 59 GLLDEEKAEAIVKACDEIIAGKLHDQFVVDVIQGGAGTSTNMNANEVIANRALELLGHEK 118
Query: 157 GE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIV 215
GE + VHPNDHVN SQS+ND +PT + +A + +L+ L L + +K+ EF D++
Sbjct: 119 GEYQYVHPNDHVNMSQSTNDVYPTALRLALILLLR-KLLDALAALQEAFQAKAREFADVL 177
Query: 216 KIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGF 275
K+GRT QDA P+TLGQEF Y T +K R+ R+ ++ GGTA+GTG+N G+
Sbjct: 178 KMGRTQLQDAVPMTLGQEFGAYATALKRDRARIYKARERLREVNLGGTAIGTGINAPPGY 237
Query: 276 DVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGP 335
+ ++E T LP AEN +A DAFVE SGAL +A L KIAND+RLL SGP
Sbjct: 238 IELVVEKLSEITGLPLKRAENLIDATQNTDAFVEVSGALKRLAVKLSKIANDLRLLSSGP 297
Query: 336 RCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFK 395
R GLGE+ LP +PGSSIMPGKVNP E + V QVIGN + IT+ G ELNVF+
Sbjct: 298 RAGLGEINLPAVQPGSSIMPGKVNPVIPEVVNQVAFQVIGNDLTITMAAEAGQLELNVFE 357
Query: 396 PMIASGLLHSLRLLGDASASFEKNCVRGIQANRER 430
P+IA LL S+ +L +A + + C+ GI AN ER
Sbjct: 358 PVIAYNLLESIDILTNAVRTLRERCIDGITANEER 392
>gnl|CDD|171490 PRK12425, PRK12425, fumarate hydratase; Provisional.
Length = 464
Score = 490 bits (1263), Expect = e-172
Identities = 228/400 (57%), Positives = 276/400 (69%), Gaps = 4/400 (1%)
Query: 38 REEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEY 97
R E D+ GPI VP D WGAQTQRSL NF IG ER MP ++ A ++KK AA+VN
Sbjct: 3 RTETDSLGPIEVPEDAYWGAQTQRSLINFAIGKER--MPLAVLHALALIKKAAARVNDRN 60
Query: 98 G-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKR 156
G L I + I QAA EV +G+ +D FPLVVWQTGSGTQSNMN NEVIA RA E+ G+ R
Sbjct: 61 GDLPADIARLIEQAADEVLDGQHDDQFPLVVWQTGSGTQSNMNVNEVIAGRANELAGNGR 120
Query: 157 GEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIV 215
G K VHPNDHVNRSQSSND FPT MHIAAA + +L+P + L L +S +V
Sbjct: 121 GGKSPVHPNDHVNRSQSSNDCFPTAMHIAAAQAVHEQLLPAIAELSGGLAEQSARHAKLV 180
Query: 216 KIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGF 275
K GRTH DATP+T GQE S + Q+ Y + LP + +LAQGGTAVGTGLN GF
Sbjct: 181 KTGRTHMMDATPITFGQELSAFVAQLDYAERAIRAALPAVCELAQGGTAVGTGLNAPHGF 240
Query: 276 DVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGP 335
IA+ +A + LPFVTA NKF ALA H+ V SGAL T+A +LMKIAND+RLLGSGP
Sbjct: 241 AEAIAAELAALSGLPFVTAPNKFAALAGHEPLVSLSGALKTLAVALMKIANDLRLLGSGP 300
Query: 336 RCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFK 395
R GL E+ LP NEPGSSIMPGKVNPTQCEAL+M+ QV+GN I S GH +LNVFK
Sbjct: 301 RAGLAEVRLPANEPGSSIMPGKVNPTQCEALSMLACQVMGNDATIGFAASQGHLQLNVFK 360
Query: 396 PMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLL 435
P+I LL S+RLL D +F+++CV G++ + E+++ L
Sbjct: 361 PVIIHNLLQSIRLLADGCRNFQQHCVAGLEPDAEQMAAHL 400
>gnl|CDD|183992 PRK13353, PRK13353, aspartate ammonia-lyase; Provisional.
Length = 473
Score = 481 bits (1240), Expect = e-168
Identities = 187/399 (46%), Positives = 249/399 (62%), Gaps = 5/399 (1%)
Query: 34 STSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKV 93
+ + R E D G VP++ +G QT R+++NF I G + + ++RAF +KK AA
Sbjct: 2 NKNMRIEHDLLGEKEVPAEAYYGIQTLRAVENFPITGYK--IHPELIRAFAQVKKAAALA 59
Query: 94 NMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEIL 152
N + G L I +AI+QA E+ GKL+D F + Q G+GT +NMNANEVIANRA E+L
Sbjct: 60 NADLGLLPRRIAEAIVQACDEILAGKLHDQFIVDPIQGGAGTSTNMNANEVIANRALELL 119
Query: 153 GHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEF 211
G ++G+ V PNDHVN +QS+ND FPT + IAA L+ + L + K+ EF
Sbjct: 120 GGEKGDYHYVSPNDHVNMAQSTNDVFPTAIRIAALNLL-EGLLAAMGALQDVFEEKAAEF 178
Query: 212 KDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNT 271
++K+GRT QDA P+TLGQEFS Y +K R+ +Y++ GGTAVGTGLN
Sbjct: 179 DHVIKMGRTQLQDAVPITLGQEFSAYARALKRDRKRIQQAREHLYEVNLGGTAVGTGLNA 238
Query: 272 KKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLL 331
+ ++ +A T LP V AE+ +A DAFVE SGAL A +L KIAND+RLL
Sbjct: 239 DPEYIERVVKHLAAITGLPLVGAEDLVDATQNTDAFVEVSGALKVCAVNLSKIANDLRLL 298
Query: 332 GSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFEL 391
SGPR GLGE+ LP +PGSSIMPGKVNP E + + QVIGN V IT+ G EL
Sbjct: 299 SSGPRTGLGEINLPAVQPGSSIMPGKVNPVMPEVVNQIAFQVIGNDVTITLAAEAGQLEL 358
Query: 392 NVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRER 430
NV +P+IA LL S+ +L +A +F NCV+GI+AN ER
Sbjct: 359 NVMEPVIAFNLLESISILTNACRAFTDNCVKGIEANEER 397
>gnl|CDD|223958 COG1027, AspA, Aspartate ammonia-lyase [Amino acid transport and
metabolism].
Length = 471
Score = 456 bits (1176), Expect = e-159
Identities = 182/399 (45%), Positives = 246/399 (61%), Gaps = 3/399 (0%)
Query: 34 STSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKV 93
ST R E+D G +P++ +G T R+++NF I G + +RA ++KK AA
Sbjct: 1 STDMRIERDLLGEREIPAEVYYGIHTLRAVENFPISGLKISDVPEFIRAMAMVKKAAALA 60
Query: 94 NMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEIL 152
N E G L I AI++A E+ +GK +D F + V+Q G+GT +NMNANEVIANRA E+L
Sbjct: 61 NKELGALPKEIADAIVKACDEILDGKCHDQFVVDVYQGGAGTSTNMNANEVIANRALELL 120
Query: 153 GHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEF 211
GH++GE + +HPNDHVN SQS+ND +PT IA ++ +LI L+ L + K+ EF
Sbjct: 121 GHEKGEYQYLHPNDHVNMSQSTNDAYPTAFRIAV-YKSLRKLIDALEDLIEAFERKAKEF 179
Query: 212 KDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNT 271
DI+K+GRT QDA P+TLGQEF + +K I R+ + ++ GGTA+GTG+N
Sbjct: 180 ADILKMGRTQLQDAVPMTLGQEFGAFAVALKEDIKRIYRAAELLLEVNLGGTAIGTGINA 239
Query: 272 KKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLL 331
KG+ + +AE T LP V AEN EA AFV SGAL +A L KI ND+RLL
Sbjct: 240 PKGYIELVVKKLAEVTGLPLVPAENLIEATQDTGAFVMVSGALKRLAVKLSKICNDLRLL 299
Query: 332 GSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFEL 391
SGPR GL E+ LP + GSSIMPGKVNP E + VC +VIGN IT+ G +L
Sbjct: 300 SSGPRAGLNEINLPAVQAGSSIMPGKVNPVIPEVVNQVCFKVIGNDTTITMAAEAGQLQL 359
Query: 392 NVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRER 430
NV +P+IA L S+ +L +A + + C+ GI AN ER
Sbjct: 360 NVMEPVIAYALFESISILTNACRNLREKCIDGITANEER 398
>gnl|CDD|213564 TIGR00839, aspA, aspartate ammonia-lyase. This enzyme, aspartate
ammonia-lyase, shows local homology to a number of other
lyases, as modeled by Pfam model pfam00206. Fumarate
hydratase scores as high as 570 bits against this model
[Energy metabolism, Amino acids and amines].
Length = 468
Score = 389 bits (1000), Expect = e-132
Identities = 165/396 (41%), Positives = 231/396 (58%), Gaps = 4/396 (1%)
Query: 38 REEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEY 97
R E+D G VP+D +G T R+ +NF I + VR ++KK AA N E
Sbjct: 1 RIEEDLLGEREVPADAYYGIHTLRASENFYISNNKISDIPEFVRGMVMVKKAAALANKEL 60
Query: 98 G-LDPAIGKAIMQAAQEVAE-GKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHK 155
G + +I AI+ A E+ GK +D FP+ V+Q G+GT NMN NEVIAN A E++GH+
Sbjct: 61 GTIPESIANAIVAACDEILNNGKCHDQFPVDVYQGGAGTSVNMNTNEVIANLALELMGHQ 120
Query: 156 RGEKIV-HPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDI 214
+GE +PNDHVN+SQS+ND +PT IA + +L+ + L + K+ EF DI
Sbjct: 121 KGEYQYLNPNDHVNKSQSTNDAYPTGFRIAV-YSSLIKLVDAINQLRDGFEQKAKEFADI 179
Query: 215 VKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKG 274
+K+GRT QDA P+TLGQEF ++ ++ + + + ++ G TA+GTGLNT
Sbjct: 180 LKMGRTQLQDAVPMTLGQEFEAFSILLEEEVKNIKRTAELLLEVNLGATAIGTGLNTPPE 239
Query: 275 FDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSG 334
+ + +AE T LP V AEN EA + A+V GAL +A + KI ND+RLL SG
Sbjct: 240 YSPLVVKKLAEVTGLPCVPAENLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSG 299
Query: 335 PRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVF 394
PR GL E+ LPE + GSSIMP KVNP E + VC +VIGN +T+ G +LNV
Sbjct: 300 PRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTLAAEAGQLQLNVM 359
Query: 395 KPMIASGLLHSLRLLGDASASFEKNCVRGIQANRER 430
+P+I + S+ +L +A + CV GI AN+E
Sbjct: 360 EPVIGQAMFESIHILTNACYNLTDKCVNGITANKEI 395
>gnl|CDD|215787 pfam00206, Lyase_1, Lyase.
Length = 312
Score = 373 bits (961), Expect = e-128
Identities = 159/333 (47%), Positives = 190/333 (57%), Gaps = 23/333 (6%)
Query: 45 GPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIG 104
G VP+D L G T RS NF + E + LKK AAK N+
Sbjct: 1 GRFTVPADALMGIFTDRSRFNFRLSEEDIK-------GLAALKKAAAKANVLL---KEEA 50
Query: 105 KAIMQAAQEVAE-GKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHP 163
AI++A EVAE GK +D FPL V Q GSGT NMN NEVI E+LG VHP
Sbjct: 51 AAIIKALDEVAEEGKADDAFPLKVIQEGSGTAVNMNLNEVIG----ELLGQL-----VHP 101
Query: 164 NDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQ 223
ND V+ QSSND PT + +A + + L+P L L ++L K+ EF D+VK GRTH Q
Sbjct: 102 NDKVHTGQSSNDQVPTALRLALKLALSEVLLPALGQLIDALKEKAKEFADVVKPGRTHLQ 161
Query: 224 DATPLTLGQEFSGYTTQVKYGIDRVICCLPRM-YQLAQGGTAVGTGLNTKKGFDVKIASA 282
DATP+TLGQE SGY + ++R+ LPR+ + GGTAVGTGLN F +A
Sbjct: 162 DATPVTLGQELSGYAVALTRDLERLKQLLPRILVEPLGGGTAVGTGLNADPEFAELLAKE 221
Query: 283 VAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGEL 342
+ T LP V A N FEA + DA VE SGAL +A L K AND+RLL SGP G EL
Sbjct: 222 LGFFTGLP-VPAPNSFEATSDRDAVVEFSGALALLATHLSKFANDLRLLSSGP-FGFVEL 279
Query: 343 ILPENEPGSSIMPGKVNPTQCEALTMVCAQVIG 375
LPE EPGSSIMPGKVNP Q E L +V G
Sbjct: 280 SLPEGEPGSSIMPGKVNPDQLELLRGKAGRVFG 312
>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which
catalyze similar beta-elimination reactions. The Lyase
class I family contains class II fumarase, aspartase,
adenylosuccinate lyase (ASL), argininosuccinate lyase
(ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate
cycloisomerase (pCMLE), and related proteins. It belongs
to the Lyase_I superfamily. Proteins of this family for
the most part catalyze similar beta-elimination
reactions in which a C-N or C-O bond is cleaved with the
release of fumarate as one of the products. These
proteins are active as tetramers. The four active sites
of the homotetrameric enzyme are each formed by residues
from three different subunits.
Length = 325
Score = 349 bits (898), Expect = e-119
Identities = 121/350 (34%), Positives = 165/350 (47%), Gaps = 27/350 (7%)
Query: 80 VRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNM 138
+RA ++K AK E G L +AI+ A E+ EG D Q GSGT M
Sbjct: 1 IRADLQVEKAHAKALAELGLLPKEAAEAILAALDEILEGIAADQV----EQEGSGTHDVM 56
Query: 139 NANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLK 198
EV+A RA E+ N + S++ A + L+P LK
Sbjct: 57 AVEEVLAERAGEL------------NGGYVHTGRSSNDIVDTALRLALRDALDILLPALK 104
Query: 199 VLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQL 258
L ++L +K+ E KD V GRTH QDA P TLG E + + +++ ++R+ L R+ L
Sbjct: 105 ALIDALAAKAEEHKDTVMPGRTHLQDAQPTTLGHELAAWAAELERDLERLEEALKRLNVL 164
Query: 259 AQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVA 318
GG AVGTG N ++A + F A N +A++ D VE AL +A
Sbjct: 165 PLGGGAVGTGANAPPIDRERVAELLGF-----FGPAPNSTQAVSDRDFLVELLSALALLA 219
Query: 319 ASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCEALTMVCAQVIGNH 377
SL KIAND+RLL SG GE+ LP+ +PGSSIMP KVNP E + + +VIGN
Sbjct: 220 VSLSKIANDLRLLSSG---EFGEVELPDAKQPGSSIMPQKVNPVILELVRGLAGRVIGNL 276
Query: 378 VAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQAN 427
A+ G E NV P+ L S LL A G++ N
Sbjct: 277 AALLEALKGGPLEDNVDSPVEREALPDSFDLLDAALRLLTGVL-EGLEVN 325
>gnl|CDD|237743 PRK14515, PRK14515, aspartate ammonia-lyase; Provisional.
Length = 479
Score = 341 bits (876), Expect = e-113
Identities = 168/402 (41%), Positives = 246/402 (61%), Gaps = 5/402 (1%)
Query: 38 REEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEY 97
R EKD G VP+ +G QT R+++NF I G + + E +++AF I+KK AA N +
Sbjct: 12 RIEKDFLGEKEVPNYAYYGVQTMRAVENFPITGYK--IHEGLIKAFAIVKKAAALANTDV 69
Query: 98 G-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKR 156
G L+ G AI +AAQE+ +GK +DHF + Q G+GT NMNANEVIANRA E+LG ++
Sbjct: 70 GRLELNKGGAIAEAAQEILDGKWHDHFIVDPIQGGAGTSMNMNANEVIANRALELLGMEK 129
Query: 157 GEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIV 215
G+ + PN HVN +QS+ND FPT +HIA L+ + +H+ K+ +F ++
Sbjct: 130 GDYHYISPNSHVNMAQSTNDAFPTAIHIATLNALE-GLLQTMGYMHDVFELKAEQFDHVI 188
Query: 216 KIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGF 275
K+GRTH QDA P+ LGQEF Y+ ++ + R+ +Y++ G TAVGTGLN +
Sbjct: 189 KMGRTHLQDAVPIRLGQEFKAYSRVLERDMKRIQQSRQHLYEVNMGATAVGTGLNADPEY 248
Query: 276 DVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGP 335
+ +A + LP V AE+ +A DA+ E S AL ++ KIAND+RL+ SGP
Sbjct: 249 IEAVVKHLAAISELPLVGAEDLVDATQNTDAYTEVSAALKVCMMNMSKIANDLRLMASGP 308
Query: 336 RCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFK 395
R GL E++LP +PGSSIMPGKVNP E + + QVIGN I + G ELNV +
Sbjct: 309 RVGLAEIMLPARQPGSSIMPGKVNPVMPEVINQIAFQVIGNDHTICLASEAGQLELNVME 368
Query: 396 PMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE 437
P++ LL S+ ++ + +F NC++GI+AN +R+ + + +
Sbjct: 369 PVLVFNLLQSISIMNNGFRAFTDNCLKGIEANEDRLKEYVEK 410
>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the
lyase class I family, histidine ammonia-lyase and
phenylalanine ammonia-lyase, which catalyze similar
beta-elimination reactions. Lyase class I_like
superfamily of enzymes that catalyze beta-elimination
reactions and are active as homotetramers. The four
active sites of the homotetrameric enzyme are each
formed by residues from three different subunits. This
superfamily contains the lyase class I family, histidine
ammonia-lyase and phenylalanine ammonia-lyase. The lyase
class I family comprises proteins similar to class II
fumarase, aspartase, adenylosuccinate lyase,
argininosuccinate lyase, and 3-carboxy-cis, cis-muconate
lactonizing enzyme which, for the most part catalyze
similar beta-elimination reactions in which a C-N or C-O
bond is cleaved with the release of fumarate as one of
the products. Histidine or phenylalanine ammonia-lyase
catalyze a beta-elimination of ammonia from histidine
and phenylalanine, respectively.
Length = 231
Score = 193 bits (493), Expect = 2e-59
Identities = 86/279 (30%), Positives = 109/279 (39%), Gaps = 62/279 (22%)
Query: 138 MNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNL 197
EV+A RA E+ G G +VH S++ T A + L+P L
Sbjct: 14 ALVEEVLAGRAGELAGGLHGSALVH-------KGRSSNDIGTTALRLALRDALDDLLPLL 66
Query: 198 KVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQ 257
K L ++L K+ K V GRTH QDA P+TLG E + + ++R+
Sbjct: 67 KALIDALALKAEAHKGTVMPGRTHLQDAQPVTLGYELRAWAQVLGRDLERL--------- 117
Query: 258 LAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTV 317
+AVAE AL
Sbjct: 118 ---------------------EEAAVAE------------------------ALDALALA 132
Query: 318 AASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNH 377
AA L KIA D+RLL SG LGE LP +PGSSIMP KVNP E + + VIGN
Sbjct: 133 AAHLSKIAEDLRLLLSGEFGELGEPFLP-GQPGSSIMPQKVNPVAAELVRGLAGLVIGNL 191
Query: 378 VAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASF 416
VA+ G N P + L SL LL DA
Sbjct: 192 VAVLTALKGGPERDNEDSPSMREILADSLLLLIDALRLL 230
>gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase
(ASL)_like. This group contains ASL, prokaryotic-type
3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and
related proteins. These proteins are members of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. ASL catalyzes two steps in the
de novo purine biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and; the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP). pCMLE catalyzes the
cyclization of 3-carboxy-cis,cis-muconate (3CM) to
4-carboxy-muconolactone, in the beta-ketoadipate
pathway. ASL deficiency has been linked to several
pathologies including psychomotor retardation with
autistic features, epilepsy and muscle wasting.
Length = 381
Score = 98.0 bits (245), Expect = 2e-22
Identities = 77/275 (28%), Positives = 121/275 (44%), Gaps = 33/275 (12%)
Query: 170 SQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLT 229
SQ NDT + + A++ ++P+L L ++L ++E KD +GRTH Q A P T
Sbjct: 89 SQDINDT-ALALQLRDALD---IILPDLDALIDALAKLALEHKDTPMLGRTHGQHALPTT 144
Query: 230 LGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLN-TKKGFDVKIASAVAEETS 288
G++F+ + ++ ++R+ R+ G AVGT + KG +V VAE+
Sbjct: 145 FGKKFAVWAAELLRHLERLEEARERVLVGGISG-AVGTHASLGPKGPEV--EERVAEKLG 201
Query: 289 LPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--E 346
L + E D E AL +A +L KIA D+RLL R +GE+ P +
Sbjct: 202 LKVPPITTQIE---PRDRIAELLSALALIAGTLEKIATDIRLLQ---RTEIGEVEEPFEK 255
Query: 347 NEPGSSIMPGKVNPTQCEALT----MVCAQVIGNHVAITV----GGSNGHFELNVFKPMI 398
+ GSS MP K NP E + +V A + S+ E N+ P
Sbjct: 256 GQVGSSTMPHKRNPIDSENIEGLARLVRALAAPALENLVQWHERDLSDSSVERNIL-PDA 314
Query: 399 ASGLLHSLRLLGDASASFEKNCVRGIQANRERISK 433
L +L L + + G+ N ER+ +
Sbjct: 315 FLLLDAALSRL--------QGLLEGLVVNPERMRR 341
>gnl|CDD|223094 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and
metabolism].
Length = 438
Score = 90.0 bits (224), Expect = 1e-19
Identities = 64/201 (31%), Positives = 95/201 (47%), Gaps = 16/201 (7%)
Query: 170 SQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLT 229
SQ DT + + A++ ++P+LK L +L ++E KD +GRTH Q A P T
Sbjct: 98 SQDIIDT-ALALQLKEALDL---ILPDLKRLIEALAELALEHKDTPMLGRTHGQPAEPTT 153
Query: 230 LGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTK-KGFDVKIASAVAEETS 288
G++F+ + ++ ++R+ R+ GG AVGT G +V VAE+
Sbjct: 154 FGKKFANWLAELLRHLERLEEAEERIIVGKIGG-AVGTLAALGDLGAEV--EERVAEKLG 210
Query: 289 LPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--E 346
L + D E AL +A SL K A D+RLL R +GE+ P +
Sbjct: 211 LKPAPISTQVS---PRDRIAEFFSALALLAGSLEKFARDIRLLQ---RTEVGEVEEPFAK 264
Query: 347 NEPGSSIMPGKVNPTQCEALT 367
+ GSS MP K NP E +T
Sbjct: 265 GQVGSSAMPHKRNPIDSENVT 285
>gnl|CDD|233192 TIGR00928, purB, adenylosuccinate lyase. This family consists of
adenylosuccinate lyase, the enzyme that catalyzes step 8
in the purine biosynthesis pathway for de novo synthesis
of IMP and also the final reaction in the two-step
sequence from IMP to AMP [Purines, pyrimidines,
nucleosides, and nucleotides, Purine ribonucleotide
biosynthesis].
Length = 435
Score = 82.0 bits (203), Expect = 7e-17
Identities = 57/183 (31%), Positives = 81/183 (44%), Gaps = 22/183 (12%)
Query: 193 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 252
++P LK L + L +VE+KD V +GRTH Q A P TLG++F+ + D + L
Sbjct: 116 ILPKLKQLIDRLKDLAVEYKDTVMLGRTHGQHAEPTTLGKKFALW-------ADEMKRQL 168
Query: 253 PRMYQLAQGGT------AVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDA 306
R+ Q + AVGT + ++ V E L V + E D
Sbjct: 169 ERLLQAKERIKVGGISGAVGTHAAAYPLVE-EVEERVTEFLGLKPVPISTQIE---PRDR 224
Query: 307 FVETSGALNTVAASLMKIANDVRLLGSGPRCGLGEL--ILPENEPGSSIMPGKVNPTQCE 364
E AL +A +L K A D+RLL R E+ + + GSS MP K NP E
Sbjct: 225 HAELLDALALLATTLEKFAVDIRLL---QRTEHFEVEEPFGKGQVGSSAMPHKRNPIDFE 281
Query: 365 ALT 367
+
Sbjct: 282 NVC 284
>gnl|CDD|176469 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate
cycloisomerase (CMLE)_like. This subgroup contains
pCLME and related proteins, and belongs to the Lyase
class I family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. CMLE catalyzes the cyclization of
3-carboxy-cis,cis-muconate (3CM) to
4-carboxy-muconolactone in the beta-ketoadipate pathway.
This pathway is responsible for the catabolism of a
variety of aromatic compounds into intermediates of the
citric cycle in prokaryotic and eukaryotic
micro-organisms.
Length = 437
Score = 80.8 bits (200), Expect = 2e-16
Identities = 52/180 (28%), Positives = 80/180 (44%), Gaps = 14/180 (7%)
Query: 204 LHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGT 263
L + +D +GRTH Q A P+T G + + + +++ +R+ PR+ + GG
Sbjct: 129 LARLAATHRDTPMVGRTHLQHALPITFGLKVAVWLSELLRHRERLDELRPRVLVVQFGG- 187
Query: 264 AVGTGLN-TKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLM 322
A GT + +G V A+A E L A D E + L + +L
Sbjct: 188 AAGTLASLGDQGLAV--QEALAAELGL----GVPAIPWHTARDRIAELASFLALLTGTLG 241
Query: 323 KIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAI 380
KIA DV LL + +GE+ P + GSS MP K NP CE + A+ + A+
Sbjct: 242 KIARDVYLLM---QTEIGEVAEPFAKGRGGSSTMPHKRNPVGCELIV-ALARRVPGLAAL 297
>gnl|CDD|176464 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase
(ASL)_subgroup 1. This subgroup contains bacterial and
archeal proteins similar to ASL, a member of the Lyase
class I family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASL catalyzes two steps in the de novo purine
biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and, the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP).
Length = 387
Score = 76.4 bits (189), Expect = 4e-15
Identities = 58/200 (29%), Positives = 92/200 (46%), Gaps = 20/200 (10%)
Query: 173 SNDTFPTVMHIAAAM---ETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLT 229
S+D V+ A A+ E ++ +LK L L K++E KD V +GRTH A P T
Sbjct: 91 SSD----VVDTALALQLREALDIILKDLKELLEVLKKKALEHKDTVMVGRTHGIHAEPTT 146
Query: 230 LGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSL 289
G +F+ + + K ++R+ R+ + + AVGT N ++ VAE+ L
Sbjct: 147 FGLKFALWYAEFKRHLERLKEARERI-LVGKISGAVGTYAN----LGPEVEERVAEKLGL 201
Query: 290 PFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--EN 347
+ + D E L +A++L KIA ++R L R + E+ P +
Sbjct: 202 KPEPISTQ---VIQRDRHAEYLSTLALIASTLEKIATEIRHL---QRTEVLEVEEPFSKG 255
Query: 348 EPGSSIMPGKVNPTQCEALT 367
+ GSS MP K NP E +
Sbjct: 256 QKGSSAMPHKRNPILSENIC 275
>gnl|CDD|235792 PRK06390, PRK06390, adenylosuccinate lyase; Provisional.
Length = 451
Score = 70.7 bits (173), Expect = 3e-13
Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 24/208 (11%)
Query: 172 SSNDTFPTVMHIAAAMETN---SRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPL 228
+SND T A A++ + S + ++K L +L E+KD +GRTH Q A+P+
Sbjct: 101 TSNDINDT----ATALQIHDFVSIIKDDIKNLMETLIKLIDEYKDSPMMGRTHGQHASPI 156
Query: 229 TLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNT-KKGFDVK-----IASA 282
T G +F+ Y ++ +DR+ R + G VGTG K D++ I
Sbjct: 157 TFGLKFAVYLDEMSRHLDRLTEMGDRAFAGKVLG-PVGTGAALGKDALDIQNRVMEILGI 215
Query: 283 VAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGEL 342
+E S V D ++E +N ++ +L KIA ++R L + E
Sbjct: 216 YSEIGSTQIVN----------RDRYIEYLSVINGISVTLEKIATEIRNLQRPEIDEVSEY 265
Query: 343 ILPENEPGSSIMPGKVNPTQCEALTMVC 370
E++ GSS MP KVNP E + +
Sbjct: 266 FDEESQVGSSSMPSKVNPINSENVVSLS 293
>gnl|CDD|236283 PRK08540, PRK08540, adenylosuccinate lyase; Reviewed.
Length = 449
Score = 69.2 bits (170), Expect = 9e-13
Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 18/174 (10%)
Query: 197 LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMY 256
LK L L K+ E K+ V IGRTH Q A P T G F+ + ++++ ++R+ PR+
Sbjct: 126 LKKLRGVLLKKAEEHKNTVCIGRTHGQHAVPTTYGMRFAIWASEIQRHLERLEQLKPRV- 184
Query: 257 QLAQGGTAVGT----GLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSG 312
+ Q AVGT G +KG +++ V E L V N+ H F+
Sbjct: 185 CVGQMTGAVGTQAAFG---EKGIEIQ--KRVMEILGLKPVLISNQVIQRDRHAEFMMF-- 237
Query: 313 ALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCE 364
L +A +L KI ++R L R +GE+ + + GSS MP K NP E
Sbjct: 238 -LANIATTLDKIGLEIRNL---QRTEIGEVEEEFGKKQVGSSTMPHKRNPITSE 287
>gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase. This model describes
argininosuccinate lyase, but may include examples of
avian delta crystallins, in which argininosuccinate
lyase activity may or may not be present and the
biological role is to provide the optically clear
cellular protein of the eye lens [Amino acid
biosynthesis, Glutamate family].
Length = 455
Score = 66.6 bits (163), Expect = 6e-12
Identities = 65/277 (23%), Positives = 104/277 (37%), Gaps = 33/277 (11%)
Query: 106 AIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPND 165
+ + +E EG + + I + +G G K+
Sbjct: 59 GLNELKEEGREGPFILDPDD------------EDIHMAIERELIDRVGEDLGGKL----- 101
Query: 166 HVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDA 225
H RS+ ND T + + + L L L ++L + + + + G TH Q A
Sbjct: 102 HTGRSR--NDQVATDLRLYLR-DHVLELAEALLDLQDALIELAEKHVETLMPGYTHLQRA 158
Query: 226 TPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAV-GTGLNTKKGFDVKIASAVA 284
P+TL Y + +R+ L R+ G A+ GTG + + +A
Sbjct: 159 QPITLAHHLLAYAEMLLRDYERLQDALKRVNVSPLGSGALAGTGFPIDREY-------LA 211
Query: 285 EETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELIL 344
E VT EN +A++ D +E + L + A D+ L +G G + L
Sbjct: 212 ELLGFDAVT-ENSLDAVSDRDFILELLFVAALIMVHLSRFAEDLILWSTGE---FGFVEL 267
Query: 345 P-ENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAI 380
P E GSSIMP K NP E + +V GN +
Sbjct: 268 PDEFSSGSSIMPQKKNPDVAELIRGKTGRVQGNLTGM 304
>gnl|CDD|233863 TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-muconate
cycloisomerase. Members of this family are
3-carboxy-cis,cis-muconate cycloisomerase, the enzyme
the catalyzes the second step in the protocatechuate
degradation to beta-ketoadipate and then to succinyl-CoA
and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate,
and vanillate all can be converted in one step to
protocatechuate. All members of the seed alignment for
this model were chosen from within protocatechuate
degradation operons of at least three genes of the
pathway, from genomes with the complete pathway through
beta-ketoadipate [Energy metabolism, Other].
Length = 338
Score = 59.4 bits (144), Expect = 1e-09
Identities = 65/207 (31%), Positives = 89/207 (42%), Gaps = 23/207 (11%)
Query: 166 HVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDA 225
+V+R +S D T + + L+ +L L ++L + +D GRT Q A
Sbjct: 92 YVHRGATSQDVIDTSLMLQLRDAL-DLLLADLGRLADALADLAARHRDTPMTGRTLLQQA 150
Query: 226 TPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGT--GLNTKKGFDVKIASAV 283
P T G + +G+ V DR+ R L GG A GT L T+ G +A+A+
Sbjct: 151 VPTTFGLKAAGWLAAVLRARDRLAALRTRALPLQFGG-AAGTLAALGTRGG---AVAAAL 206
Query: 284 AEETSLPFVTAENKFEALAAH---DAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLG 340
A LP AL H D E AL VA +L KIA D+ LL + +G
Sbjct: 207 AARLGLP-------LPALPWHTQRDRIAEFGSALALVAGALGKIAGDIALLS---QTEVG 256
Query: 341 ELILPENEP-GSSIMPGKVNPTQCEAL 366
E+ E GSS MP K NP L
Sbjct: 257 EVF--EAGGGGSSAMPHKRNPVGAALL 281
>gnl|CDD|181627 PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cycloisomerase;
Provisional.
Length = 452
Score = 59.3 bits (144), Expect = 2e-09
Identities = 67/204 (32%), Positives = 94/204 (46%), Gaps = 25/204 (12%)
Query: 170 SQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLT 229
SQ DT V+ + A++ L P+L L ++L + + + +GRT Q A P+T
Sbjct: 108 SQDIIDT-GLVLQLRDALD---LLEPDLDRLCDALATLAARHRATPMVGRTWLQQALPVT 163
Query: 230 LGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGT--GLNTKKGFDVKIASAVAEET 287
LG +F+G+ + R+ PR L Q G A GT L + V A A+A E
Sbjct: 164 LGLKFAGWLDALLRHRQRLAALRPRALVL-QFGGAAGTLASLGE-QALPV--AQALAAEL 219
Query: 288 SLPFVTAENKFEALAAH---DAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELIL 344
L AL H D E + AL +A +L KIA DV LL + +GE+
Sbjct: 220 QLA-------LPALPWHTQRDRIAEFASALGLLAGTLGKIARDVSLL---MQTEVGEVFE 269
Query: 345 P--ENEPGSSIMPGKVNPTQCEAL 366
P + GSS MP K NP C A+
Sbjct: 270 PAAAGKGGSSTMPHKRNPVGCAAV 293
>gnl|CDD|176470 cd01598, PurB, PurB_like adenylosuccinases (adenylsuccinate lyase,
ASL). This subgroup contains EcASL, the product of the
purB gene in Escherichia coli, and related proteins. It
is a member of the Lyase class I family of the Lyase_I
superfamily. Members of the Lyase class I family
function as homotetramers to catalyze similar
beta-elimination reactions in which a Calpha-N or
Calpha-O bond is cleaved with the subsequent release of
fumarate as one of the products. The four active sites
of the homotetrameric enzyme are each formed by residues
from three different subunits. ASL catalyzes two
non-sequential steps in the de novo purine biosynthesis
pathway: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and; the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP).
Length = 425
Score = 53.8 bits (130), Expect = 7e-08
Identities = 57/198 (28%), Positives = 86/198 (43%), Gaps = 44/198 (22%)
Query: 181 MHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQ 240
+ I A N ++P LK + +SL + E+ D+ + RTH Q ATP TLG+E + +
Sbjct: 111 LMIKEAR--NEVILPLLKEIIDSLKKLAKEYADVPMLSRTHGQPATPTTLGKELAVFV-- 166
Query: 241 VKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIAS-------AVAEE--TSL-- 289
Y ++R L ++ L + AVG F+ + + +E TSL
Sbjct: 167 --YRLERQYKQLKQIEILGKFNGAVGN-------FNAHLVAYPDVDWRKFSEFFVTSLGL 217
Query: 290 ---PFVTA-ENKFEALAAHDAFVETSGAL---NTVAASLMKIANDVRLLGSGPRCGLGEL 342
P+ T E HD E AL NT+ L+ + D+ S G +
Sbjct: 218 TWNPYTTQIEP-------HDYIAELFDALARINTI---LIDLCRDIWGYIS---LGYFKQ 264
Query: 343 ILPENEPGSSIMPGKVNP 360
+ + E GSS MP KVNP
Sbjct: 265 KVKKGEVGSSTMPHKVNP 282
>gnl|CDD|215348 PLN02646, PLN02646, argininosuccinate lyase.
Length = 474
Score = 53.6 bits (129), Expect = 1e-07
Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 13/193 (6%)
Query: 192 RLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICC 251
+ +K L +L + + D+V G TH Q A P+ L + Q++ R++ C
Sbjct: 141 VIRKRIKTLQVALVELAEKNVDLVVPGYTHLQRAQPVLLSHWLLSHVEQLERDAGRLVDC 200
Query: 252 LPRMYQLAQGGTAV-GTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVET 310
PR+ G A+ GTGL + A + + N +A++ D +E
Sbjct: 201 RPRVNFCPLGSCALAGTGLPIDRFM---TAKDLGFTAPMR-----NSIDAVSDRDFVLEF 252
Query: 311 SGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCEALTMV 369
A + A L ++ + L S G + + GSSIMP K NP E +
Sbjct: 253 LFANSITAIHLSRLGEEWVLWASEE---FGFVTPSDAVSTGSSIMPQKKNPDPMELVRGK 309
Query: 370 CAQVIGNHVAITV 382
A+VIG+ V +
Sbjct: 310 SARVIGDLVTVLA 322
>gnl|CDD|223243 COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and
metabolism].
Length = 459
Score = 51.9 bits (125), Expect = 4e-07
Identities = 63/246 (25%), Positives = 95/246 (38%), Gaps = 32/246 (13%)
Query: 142 EVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAM-----ETNSRLIPN 196
I R E +G G K+ H RS+ ND +A + + L+
Sbjct: 87 TAIEARLIERIGDV-GGKL-----HTGRSR--ND------QVATDLRLWLRDKLLELLEL 132
Query: 197 LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMY 256
+++L +L + E + V G TH Q A P+T Y + I+R+ L R+
Sbjct: 133 IRILQKALLDLAEEHAETVMPGYTHLQRAQPVTFAHHLLAYAEMLARDIERLRDALKRVN 192
Query: 257 QLAQG-GTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALN 315
G G GT + AE VT N +A++ D +E A
Sbjct: 193 VSPLGAGALAGTPFPIDRER-------TAELLGFDAVT-RNSLDAVSDRDFILEFLSAAA 244
Query: 316 TVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCEALTMVCAQVI 374
+ L ++A D+ L S G + LP+ GSSIMP K NP E + +VI
Sbjct: 245 LIMVHLSRLAEDLILWSSPE---FGFIELPDEFSTGSSIMPQKKNPDVLELIRGKAGRVI 301
Query: 375 GNHVAI 380
G +
Sbjct: 302 GALTGL 307
>gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase
(ASL)_subgroup 2. This subgroup contains mainly
eukaryotic proteins similar to ASL, a member of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. ASL catalyzes two steps in the
de novo purine biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and, the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP). ASL deficiency has
been linked to several pathologies including psychomotor
retardation with autistic features, epilepsy and muscle
wasting.
Length = 436
Score = 51.2 bits (123), Expect = 6e-07
Identities = 45/187 (24%), Positives = 82/187 (43%), Gaps = 30/187 (16%)
Query: 193 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 252
++P L + + L ++E+KD+ +G TH Q A T+G+ + + + +
Sbjct: 115 ILPKLAAVIDRLAEFALEYKDLPTLGFTHYQPAQLTTVGKRACLWIQDLLMDLRNLERLR 174
Query: 253 PRM-YQLAQGGTAVGTG---LNTKKGFDVKIAS---AVAEETSLPFV------TAENKFE 299
+ ++ +G GT L+ +G K+ + V ++ V T K +
Sbjct: 175 DDLRFRGVKG--TTGTQASFLDLFEGDHDKVEALDELVTKKAGFKKVYPVTGQTYSRKVD 232
Query: 300 ALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGK 357
++ AL+++ A+ KIA D+RLL L E+ P + + GSS MP K
Sbjct: 233 --------IDVLNALSSLGATAHKIATDIRLLA-----NLKEVEEPFEKGQIGSSAMPYK 279
Query: 358 VNPTQCE 364
NP + E
Sbjct: 280 RNPMRSE 286
>gnl|CDD|180954 PRK07380, PRK07380, adenylosuccinate lyase; Provisional.
Length = 431
Score = 50.8 bits (122), Expect = 8e-07
Identities = 52/188 (27%), Positives = 92/188 (48%), Gaps = 14/188 (7%)
Query: 193 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 252
L+ L+ L ++ ++ E ++ V IGR+H A P+T G + +G+ + +R + L
Sbjct: 113 LLEELEDLIQAIRYQAREHRNTVMIGRSHGIHAEPITFGFKLAGWLAETLRNRER-LVRL 171
Query: 253 PRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSG 312
+ Q AVGT NT D ++ + ++ L TA + + H +V+T
Sbjct: 172 REDIAVGQISGAVGTYANT----DPRVEAITCQKLGLKPDTASTQVISRDRHAEYVQT-- 225
Query: 313 ALNTVAASLMKIANDVRLLGSGPRCGLGEL--ILPENEPGSSIMPGKVNPTQCEALTMVC 370
L V ASL + A ++R L R + E+ + + GSS MP K NP + E L+ +
Sbjct: 226 -LALVGASLERFATEIRNL---QRTDVLEVEEYFAKGQKGSSAMPHKRNPIRSERLSGL- 280
Query: 371 AQVIGNHV 378
A+V+ ++
Sbjct: 281 ARVLRSYA 288
>gnl|CDD|176463 cd01359, Argininosuccinate_lyase, Argininosuccinate lyase
(argininosuccinase, ASAL). This group contains ASAL and
related proteins. It is a member of the Lyase class I
family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASAL is a cytosolic enzyme which catalyzes the
reversible breakdown of argininosuccinate to arginine
and fumarate during arginine biosynthesis. In ureotelic
species ASAL also catalyzes a reaction involved in the
production of urea. Included in this group are the major
soluble avian eye lens proteins from duck, delta 1 and
delta 2 crystallin. Of these two isoforms only delta 2
has retained ASAL activity. These crystallins may have
evolved by, gene recruitment of ASAL followed by gene
duplication. In humans, mutations in ASAL result in the
autosomal recessive disorder argininosuccinic aciduria.
Length = 435
Score = 48.7 bits (117), Expect = 3e-06
Identities = 69/275 (25%), Positives = 108/275 (39%), Gaps = 33/275 (12%)
Query: 172 SSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLG 231
S ND T + + + L+ L L +L ++ E D + G TH Q A P+T G
Sbjct: 86 SRNDQVATDLRLYL-RDALLELLELLLDLQRALLDRAEEHADTIMPGYTHLQRAQPITFG 144
Query: 232 QEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTA-VGTGLNTKKGFDVKIASAVAEETSLP 290
Y ++ ++R+ R+ G A GT + AE L
Sbjct: 145 HYLLAYAEMLERDLERLADAYKRVNVSPLGAGALAGTTFPIDRER-------TAEL--LG 195
Query: 291 F--VTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN- 347
F T EN +A++ D +E A + L ++A D+ L + G + LP+
Sbjct: 196 FDGPT-ENSLDAVSDRDFVLEFLSAAALLMVHLSRLAEDLILWSTQEF---GFVELPDAY 251
Query: 348 EPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAI--TVGG--SNGHFELNVFKPMI---AS 400
GSSIMP K NP E + +VIG + T+ G + +L K +
Sbjct: 252 STGSSIMPQKKNPDVLELIRGKAGRVIGALAGLLTTLKGLPLAYNKDLQEDKEPLFDAVD 311
Query: 401 GLLHSLRLLGDASASFEKNCVRGIQANRERISKLL 435
L+ SLRLL + + N ER+ +
Sbjct: 312 TLIASLRLLTG--------VISTLTVNPERMREAA 338
>gnl|CDD|181000 PRK07492, PRK07492, adenylosuccinate lyase; Provisional.
Length = 435
Score = 48.4 bits (116), Expect = 4e-06
Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 31/195 (15%)
Query: 193 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 252
L+ +L + +L ++ E KD IGR+H A P T G + + + + +R++
Sbjct: 116 LLADLDRVLAALKKRAFEHKDTPTIGRSHGIHAEPTTFGLKLARFYAEFARNRERLVAAR 175
Query: 253 PRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAA-------HD 305
+ A G AVGT N D ++ VA++ L K E ++ H
Sbjct: 176 EEIATCAISG-AVGTFAN----IDPRVEEHVAKKLGL-------KPEPVSTQVIPRDRHA 223
Query: 306 AFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQC 363
F T L +A+S+ ++A ++R L R + E + GSS MP K NP
Sbjct: 224 MFFAT---LGVIASSIERLAIEIRHL---QRTEVLEAEEFFSPGQKGSSAMPHKRNPVLT 277
Query: 364 EALT----MVCAQVI 374
E LT +V + V+
Sbjct: 278 ENLTGLARLVRSYVV 292
>gnl|CDD|180664 PRK06705, PRK06705, argininosuccinate lyase; Provisional.
Length = 502
Score = 47.7 bits (113), Expect = 8e-06
Identities = 59/227 (25%), Positives = 92/227 (40%), Gaps = 26/227 (11%)
Query: 170 SQSSNDTFPTVMHIA-------AAMETNS------RLIPNLKVLHNSLHSKSVEFKDIVK 216
SQ + F + MHI M S RL+ + +L S+ + + K+ +
Sbjct: 99 SQEAKSDFVSNMHIGRSRNDMGVTMYRMSLRRYVLRLMEHHLLLQESILQLAADHKETIM 158
Query: 217 IGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFD 276
THTQ A P T G YT + + R + + + Y+L L+T F
Sbjct: 159 PAYTHTQPAQPTTFGH----YTLAIYDTMQRDLERMKKTYKLLNQSPMGAAALSTTS-FP 213
Query: 277 VKIASAVAEETSLPFVTA-ENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGP 335
+K VA+ L F EN ++A+A D +E S L + + + +D LL +
Sbjct: 214 IK-RERVAD--LLGFTNVIENSYDAVAGADYLLEVSSLLMVMMTNTSRWIHDFLLLATKE 270
Query: 336 RCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITV 382
G+ + SSIMP K NP E + + +G A TV
Sbjct: 271 YDGI--TVARPYVQISSIMPQKRNPVSIEHARAITSSALGE--AFTV 313
>gnl|CDD|236352 PRK08937, PRK08937, adenylosuccinate lyase; Provisional.
Length = 216
Score = 44.6 bits (106), Expect = 3e-05
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 8/124 (6%)
Query: 313 ALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQ 372
L +A SL K AN++RLL E + + GSS MP K NP E +T A+
Sbjct: 22 VLALIATSLEKFANEIRLL-QRSEIREVEEPFAKGQKGSSAMPHKRNPIGSERIT-GLAR 79
Query: 373 VIGNHVAITVGGSNGHFELNVF-KPM--IASGLLHSLRLLGDASASFEKNCVRGIQANRE 429
V+ +++ + E ++ IA L + L D + N + + E
Sbjct: 80 VLRSYLVTALENVPLWHERDLSHSSAERIA--LPDAF-LALDYILNRFVNILENLVVFPE 136
Query: 430 RISK 433
I +
Sbjct: 137 NIER 140
>gnl|CDD|236452 PRK09285, PRK09285, adenylosuccinate lyase; Provisional.
Length = 456
Score = 42.8 bits (102), Expect = 2e-04
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 193 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEF 234
L+P L+ L ++L + E+ D+ + RTH Q ATP TLG+E
Sbjct: 143 LLPALRELIDALKELAHEYADVPMLSRTHGQPATPTTLGKEM 184
Score = 30.5 bits (70), Expect = 1.8
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 346 ENEPGSSIMPGKVNP 360
E GSS MP KVNP
Sbjct: 290 AGEIGSSTMPHKVNP 304
>gnl|CDD|183425 PRK12308, PRK12308, bifunctional argininosuccinate
lyase/N-acetylglutamate synthase; Provisional.
Length = 614
Score = 40.5 bits (95), Expect = 0.001
Identities = 66/275 (24%), Positives = 104/275 (37%), Gaps = 33/275 (12%)
Query: 166 HVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDA 225
H RS+ ND T + + + +L+ L L + + + + V G TH Q A
Sbjct: 104 HTGRSR--NDQVATDLKLWCR-QQGQQLLLALDQLQQQMVNVAERHQGTVLPGYTHLQRA 160
Query: 226 TPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQG-GTAVGTGLNTKKGFDVKIASAVA 284
P+T Y + R+ L R+ G G GT + A+A
Sbjct: 161 QPVTFAHWCLAYVEMFERDYSRLEDALTRLDTCPLGSGALAGTAYPIDR-------EALA 213
Query: 285 EETSLPFVTA-ENKFEALAAHDAFVETSGALNTVAASLM---KIANDVRLLGSGPRCGLG 340
+L F A N ++++ D +E ++ + S++ ++A D+ SG G
Sbjct: 214 H--NLGFRRATRNSLDSVSDRDHVMEL---MSVASISMLHLSRLAEDLIFYNSGES---G 265
Query: 341 ELILPEN-EPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAI--TVGGSNGHFELNVFKPM 397
+ L + GSS+MP K NP E + +V G + TV L K M
Sbjct: 266 FIELADTVTSGSSLMPQKKNPDALELIRGKTGRVYGALAGMMMTVKA----LPLAYNKDM 321
Query: 398 I--ASGLLHSLRLLGDASASFEKNCVRGIQANRER 430
GL +L D C GI+ N ER
Sbjct: 322 QEDKEGLFDALDTWND-CMEMAALCFDGIKVNGER 355
>gnl|CDD|178440 PLN02848, PLN02848, adenylosuccinate lyase.
Length = 458
Score = 40.5 bits (95), Expect = 0.002
Identities = 53/189 (28%), Positives = 80/189 (42%), Gaps = 34/189 (17%)
Query: 190 NSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVI 249
NS ++P + + ++ S + EF + + RTH Q A+P TLG+E + Y + R
Sbjct: 143 NSVVLPTMDEIIKAISSLAHEFAYVPMLSRTHGQPASPTTLGKEMA----NFAYRLSRQR 198
Query: 250 CCLPRMYQLAQGGTAVGTGLNTKKGFDVKIAS-------AVAEE--TSL-----PFVTAE 295
L + + AVG ++ +++ AVAEE TSL P+VT
Sbjct: 199 KQLSEVKIKGKFAGAVGN-------YNAHMSAYPEVDWPAVAEEFVTSLGLTFNPYVT-- 249
Query: 296 NKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMP 355
+ HD E A++ L+ D+ S G + I E GSS MP
Sbjct: 250 ----QIEPHDYMAELFNAVSRFNNILIDFDRDIWSYIS---LGYFKQITKAGEVGSSTMP 302
Query: 356 GKVNPTQCE 364
KVNP E
Sbjct: 303 HKVNPIDFE 311
>gnl|CDD|179143 PRK00855, PRK00855, argininosuccinate lyase; Provisional.
Length = 459
Score = 37.8 bits (89), Expect = 0.009
Identities = 53/202 (26%), Positives = 78/202 (38%), Gaps = 36/202 (17%)
Query: 172 SSNDTFPTVMHIAAAM-----ETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDAT 226
S ND +A + + + L L +L + E D + G TH Q A
Sbjct: 110 SRND------QVATDLRLYLRDEIDEIAELLLELQKALLDLAEEHADTIMPGYTHLQRAQ 163
Query: 227 PLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTA-VGTGLNTKKGFDVKIASAVAE 285
P+T G Y + ++R+ R+ + G A GT + AE
Sbjct: 164 PVTFGHHLLAYAEMLARDLERLRDARKRVNRSPLGSAALAGTTFPIDRER-------TAE 216
Query: 286 ETSLPF--VTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELI 343
L F VT EN +A++ D +E A + + L ++A ++ L S G EL
Sbjct: 217 L--LGFDGVT-ENSLDAVSDRDFALEFLSAASLLMVHLSRLAEELILWSS-QEFGFVEL- 271
Query: 344 LPENEP-----GSSIMPGKVNP 360
P GSSIMP K NP
Sbjct: 272 -----PDAFSTGSSIMPQKKNP 288
>gnl|CDD|168324 PRK05975, PRK05975, 3-carboxy-cis,cis-muconate cycloisomerase;
Provisional.
Length = 351
Score = 37.3 bits (87), Expect = 0.011
Identities = 39/149 (26%), Positives = 60/149 (40%), Gaps = 12/149 (8%)
Query: 218 GRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDV 277
G T Q A P+T+ + + + DR+ ++ L GG A GT L G
Sbjct: 152 GHTRMQAAIPITVADRLASWRAPLLRHRDRLEALRADVFPLQFGG-AAGT-LEKLGGKAA 209
Query: 278 KIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRC 337
+ + +A+ L E+ + + D + + L+ V SL K D+ L+
Sbjct: 210 AVRARLAKRLGL-----EDAPQWHSQRDFIADFAHLLSLVTGSLGKFGQDIALMAQ---- 260
Query: 338 GLGELILPENEPGSSIMPGKVNPTQCEAL 366
G+ I GSS MP K NP E L
Sbjct: 261 -AGDEISLSGGGGSSAMPHKQNPVAAETL 288
>gnl|CDD|181437 PRK08470, PRK08470, adenylosuccinate lyase; Provisional.
Length = 442
Score = 36.3 bits (84), Expect = 0.026
Identities = 49/204 (24%), Positives = 91/204 (44%), Gaps = 20/204 (9%)
Query: 172 SSNDTFPTVMHIAAAMETNSRL---IPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPL 228
+S+D T A A++ L I ++K L ++ +++E KD + +GR+H P+
Sbjct: 93 TSSDCIDT----AVALQMRDSLKLIIEDVKNLMEAIKKRALEHKDTLMVGRSHGIHGEPI 148
Query: 229 TLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETS 288
T G + + ++K + + + + + + A+G + +++ V EE
Sbjct: 149 TFGLVLAIWYDEIKRHLKALEHTME-VISVGKISGAMGNFAHAP----LELEELVCEELG 203
Query: 289 LPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGL--GELILPE 346
L N+ + D + + AL +A+S KIA +R L R + E +
Sbjct: 204 LKPAPVSNQ---VIQRDRYARLASALALLASSCEKIAVAIRHL---QRTEVYEAEEYFSK 257
Query: 347 NEPGSSIMPGKVNPTQCEALTMVC 370
+ GSS MP K NP E +T +C
Sbjct: 258 GQKGSSAMPHKRNPVLSENITGLC 281
>gnl|CDD|179883 PRK04833, PRK04833, argininosuccinate lyase; Provisional.
Length = 455
Score = 33.4 bits (77), Expect = 0.25
Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 21/176 (11%)
Query: 213 DIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQ--LAQGGTAVGTGLN 270
D V G TH Q A P+T Y + R+ L R+ L G A GT
Sbjct: 148 DAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGSGALA-GTAYE 206
Query: 271 TKKGFDVKIASAVAEETSLPFVTA-ENKFEALAAHDAFVETSGALNTVAASLM---KIAN 326
+ ++A L F +A N ++++ D +E L+ + S++ + A
Sbjct: 207 IDR---EQLAG------WLGFASATRNSLDSVSDRDHVLEL---LSDASISMVHLSRFAE 254
Query: 327 DVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITV 382
D+ SG G EL GSS+MP K NP E + C +V G + +
Sbjct: 255 DLIFFNSG-EAGFVELS-DRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMLM 308
>gnl|CDD|214497 smart00062, PBPb, Bacterial periplasmic substrate-binding proteins.
bacterial proteins, eukaryotic ones are in PBPe.
Length = 219
Score = 31.9 bits (73), Expect = 0.44
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 274 GFDVKIASAVAEETSLPF----VTAENKFEALAAHDAFVETSGALNT 316
GFDV +A A+A+E L V+ ++ AL + V +G T
Sbjct: 24 GFDVDLAKAIAKELGLKVEFVEVSFDSLLTALKSGKIDVVAAGMTIT 70
>gnl|CDD|235791 PRK06389, PRK06389, argininosuccinate lyase; Provisional.
Length = 434
Score = 32.2 bits (73), Expect = 0.53
Identities = 35/167 (20%), Positives = 60/167 (35%), Gaps = 18/167 (10%)
Query: 218 GRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQG---GTAVGTGLNTKKG 274
G TH + A P+T + Y +K + I L + G G G +
Sbjct: 147 GYTHFRQAMPMT----VNTYINYIKSILYHHINNLDSFLMDLREMPYGYGSGYGSPSSVK 202
Query: 275 FDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSG 334
F+ ++E + + + S ++++A L +I D+ +
Sbjct: 203 FNQ-----MSELLGMEKNIKNPVYSSSLYIKTIENISYLISSLAVDLSRICQDIIIYYEN 257
Query: 335 PRCGLGELILP-ENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAI 380
G + +P E GSS+MP K NP E + A+ I I
Sbjct: 258 -----GIITIPDEFTTGSSLMPNKRNPDYLELFQGIAAESISVLSFI 299
>gnl|CDD|240082 cd04731, HisF, The cyclase subunit of imidazoleglycerol phosphate
synthase (HisF). Imidazole glycerol phosphate synthase
(IGPS) catalyzes the fifth step of histidine
biosynthesis, the formation of the imidazole ring. IGPS
converts
N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-
carboxamide ribonucleotide (PRFAR) to imidazole glycerol
phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide)
ribonucleotide (AICAR). This conversion involves two
tightly coupled reactions in distinct active sites of
IGPS. The two catalytic domains can be fused, like in
fungi and plants, or peformed by a heterodimer
(HisH-glutaminase and HisF-cyclase), like in bacteria.
Length = 243
Score = 30.5 bits (70), Expect = 1.3
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 13/57 (22%)
Query: 271 TKKGFDVKIASAVAEETSLPFV------TAENKFEALAAHDAFVETSGALNTVAASL 321
TKKG+D+++ AV+ ++P + E+ EA A AL AAS+
Sbjct: 176 TKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGA----DAAL---AASI 225
>gnl|CDD|238078 cd00134, PBPb, Bacterial periplasmic transport systems use
membrane-bound complexes and substrate-bound,
membrane-associated, periplasmic binding proteins (PBPs)
to transport a wide variety of substrates, such as,
amino acids, peptides, sugars, vitamins and inorganic
ions. PBPs have two cell-membrane translocation
functions: bind substrate, and interact with the
membrane bound complex. A diverse group of periplasmic
transport receptors for lysine/arginine/ornithine (LAO),
glutamine, histidine, sulfate, phosphate, molybdate, and
methanol are included in the PBPb CD.
Length = 218
Score = 30.4 bits (69), Expect = 1.5
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 274 GFDVKIASAVAEETSLPF----VTAENKFEALAAHDAFVETSGALNT 316
GFDV +A A+A+E + V + AL + + +G T
Sbjct: 23 GFDVDLAKAIAKELGVKVKFVEVDWDGLITALKSGKVDLIAAGMTIT 69
>gnl|CDD|197308 cd09074, INPP5c, Catalytic domain of inositol polyphosphate
5-phosphatases. Inositol polyphosphate 5-phosphatases
(5-phosphatases) are signal-modifying enzymes, which
hydrolyze the 5-phosphate from the inositol ring of
specific 5-position phosphorylated phosphoinositides
(PIs) and inositol phosphates (IPs), such as PI(4,5)P2,
PI(3,4,5)P3, PI(3,5)P2, I(1,4,5)P3, and I(1,3,4,5)P4.
These enzymes are Mg2+-dependent, and belong to the
large EEP (exonuclease/endonuclease/phosphatase)
superfamily that contains functionally diverse enzymes
that share a common catalytic mechanism of cleaving
phosphodiester bonds. In addition to this INPP5c domain,
5-phosphatases often contain additional domains and
motifs, such as the SH2 domain, the Sac-1 domain, the
proline-rich domain (PRD), CAAX, RhoGAP
(RhoGTPase-activating protein), and SKICH [SKIP
(skeletal muscle- and kidney-enriched inositol
phosphatase) carboxyl homology] domains, that are
important for protein-protein interactions and/or for
the subcellular localization of these enzymes.
5-phosphatases incorporate into large signaling
complexes, and regulate diverse cellular processes
including postsynaptic vesicular trafficking, insulin
signaling, cell growth and survival, and endocytosis.
Loss or gain of function of 5-phosphatases is implicated
in certain human diseases. This family also contains a
functionally unrelated nitric oxide transport protein,
Cimex lectularius (bedbug) nitrophorin, which catalyzes
a heme-assisted S-nitrosation of a proximal thiolate;
the heme however binds at a site distinct from the
active site of the 5-phosphatases.
Length = 299
Score = 30.4 bits (69), Expect = 1.6
Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 251 CLPRMYQLAQGGTAVGTGLNTK---KGFDVKIASAVAEETSLPFVTAENKFEALAAHDAF 307
LP++ L G VGTG K KG V I +TS FV + LAA
Sbjct: 96 HLPQIKDLEVEGVTVGTGGGGKLGNKGG-VAI-RFQINDTSFCFVNSH-----LAAGQEE 148
Query: 308 VETS 311
VE
Sbjct: 149 VERR 152
>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase;
Provisional.
Length = 347
Score = 30.2 bits (68), Expect = 2.1
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 13/84 (15%)
Query: 180 VMHIAAAMETNSRLIPNLKVLHNSL---HSKSVEFKDIVKI--GRTHTQDATPLTLGQEF 234
V + IP +K + L S + DI +I H P+TLG EF
Sbjct: 5 VNDTDGIVRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNGAHYY---PITLGHEF 61
Query: 235 SGYTTQVKYGIDR-----VICCLP 253
SGY V G+D + C+P
Sbjct: 62 SGYVEAVGSGVDDLHPGDAVACVP 85
>gnl|CDD|240476 cd12896, SPRY_PRY_TRIM65, PRY/SPRY domain in tripartite
motif-containing domain 65 (TRIM65). This domain,
consisting of the distinct N-terminal PRY subdomain
followed by the SPRY subdomain, is found at the
C-terminus of TRIM65 proteins (composed of
RING/B-box/coiled-coil core and also known as RBCC
proteins). The SPRY/PRY combination is a possible
component of immune defense. This protein family has not
been characterized.
Length = 182
Score = 29.7 bits (67), Expect = 2.2
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 55 WGAQTQ-RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDP 101
WG Q Q + GE +++ P G+ C A YGL
Sbjct: 104 WGLQVQEDCYSAWH-NGEEQQLQGPSYTKLGVSLDCEAGTLTFYGLGD 150
>gnl|CDD|235034 PRK02395, PRK02395, hypothetical protein; Provisional.
Length = 279
Score = 29.7 bits (67), Expect = 3.0
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 97 YGLDPAIGKAIMQAAQEVA-EGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHK 155
G PA+ I A+ V + + + L V G GT+ N N+ + I A +
Sbjct: 109 VGTHPAMADVIAARARSVTGDPDVGEDTALAV--VGHGTERNENSAKAIYYHADRLRERG 166
Query: 156 R 156
R
Sbjct: 167 R 167
>gnl|CDD|235162 PRK03815, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 401
Score = 29.6 bits (67), Expect = 3.1
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 9 RLLGGGSTTSQLAGTLRYGACWRSYSTSFREE-KDTFGPILVPSDK 53
L G G TT LA L+ + F E KD G +L+PS+
Sbjct: 4 SLFGYGKTTKALAKFLKKFGGVDIFDDKFTESHKDEEGNLLLPSND 49
>gnl|CDD|189052 cd09882, PIN_MtRv0301, PIN domain of the Rv0301 toxin of
Mycobacterium tuberculosis and other uncharacterized,
annotated PilT protein domain proteins. Virulence
associated protein C (VapC)-like PIN (PilT N terminus)
domain of Mycobacterium tuberculosis protein Rv0301 and
similar bacterial proteins are included in this
subfamily. They are PIN domain homologs of the
Mycobacterium tuberculosis VapC and Neisseria
gonorrhoeae FitB toxins of the prokaryotic
toxin/antitoxin operons, VapBC and FitAB, respectively,
which are believed to be involved in growth inhibition
by regulating translation. These toxins are nearly
always co-expressed with an antitoxin, a cognate protein
inhibitor, forming an inert protein complex.
Disassociation of the protein complex activates the
ribonuclease activity of the toxin by an, as yet
undefined mechanism. VapC-like PIN domains are homologs
of flap endonuclease-1 (FEN1)-like PIN domains, but lack
the extensive arch/clamp region and the H3TH
(helix-3-turn-helix) domain, an atypical
helix-hairpin-helix-2-like region, seen in FEN1-like PIN
domains. PIN domains within this subgroup contain four
highly conserved acidic residues. These putative active
site residues are thought to bind Mg2+ and/or Mn2+ ions
and be essential for single-stranded ribonuclease
activity.
Length = 128
Score = 28.4 bits (64), Expect = 3.3
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
Query: 271 TKKGF------DVKIASAVAEETSLPFVTAENKFEALAAH 304
KKG D+ IA A A E L + + F+ +AA
Sbjct: 83 RKKGITIRSTVDLLIA-ATALEHGLTLLHNDRDFDTIAAV 121
>gnl|CDD|235010 PRK02186, PRK02186, argininosuccinate lyase; Provisional.
Length = 887
Score = 29.8 bits (67), Expect = 3.4
Identities = 43/219 (19%), Positives = 76/219 (34%), Gaps = 29/219 (13%)
Query: 223 QDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQG-GTAVGTGLNTKKGFDVKIAS 281
Q A P +LG + + + G G GT F +A
Sbjct: 565 QPALPGSLGHYLLAVDGALARETHALFALFEHIDVCPLGAGAGGGTTFPIDPEF---VAR 621
Query: 282 AVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGE 341
+ E A N +A+A+ D + A+ ++ L ++A D++L +
Sbjct: 622 LLGFEQP-----APNSLDAVASRDGVLHFLSAMAAISTVLSRLAQDLQLWTTRE---FAL 673
Query: 342 LILPEN-EPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHF--ELNVFKPMI 398
+ LP+ GSS++P K NP E + V G + + F PM
Sbjct: 674 VSLPDALTGGSSMLPQKKNPFLLEFVKGRAGVVAGALASASAALGKTPFSNSFEAGSPMN 733
Query: 399 ASGLLHSLRLLGDASASFEKNC------VRGIQANRERI 431
+ A A+ E + G++A++ R+
Sbjct: 734 G--------PIAQACAAIEDAAAVLVLLIDGLEADQARM 764
>gnl|CDD|130598 TIGR01535, glucan_glucosid, glucan 1,4-alpha-glucosidase. Glucan
1,4-alpha-glucosidase catalyzes the hydrolysis of
terminal 1,4-linked alpha-D-glucose residues from
non-reducing ends of polysaccharides, releasing a
beta-D-glucose monomer. Some forms of this enzyme can
hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds
in polysaccharides as well [Energy metabolism,
Biosynthesis and degradation of polysaccharides].
Length = 648
Score = 29.8 bits (67), Expect = 3.7
Identities = 14/70 (20%), Positives = 26/70 (37%)
Query: 87 KKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIAN 146
KK ++ + DP I++ E +G + D+ ++ N+ VI
Sbjct: 67 KKGRYRITKQIFTDPKRNALILKVTFEALKGSIGDYKLYLLLDPHLANTGGGNSGYVIKY 126
Query: 147 RAAEILGHKR 156
E+L K
Sbjct: 127 ANNEMLMAKG 136
>gnl|CDD|153283 cd07599, BAR_Rvs167p, The Bin/Amphiphysin/Rvs (BAR) domain of
Saccharomyces cerevisiae Reduced viability upon
starvation protein 167 and similar proteins. BAR
domains are dimerization, lipid binding and curvature
sensing modules found in many different proteins with
diverse functions. This subfamily is composed of fungal
proteins with similarity to Saccharomyces cerevisiae
Reduced viability upon starvation protein 167 (Rvs167p)
and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S.
cerevisiae Rvs167p plays a role in regulation of the
actin cytoskeleton, endocytosis, and sporulation. It
forms a heterodimer with another BAR domain protein
Rvs161p. Rvs161p and Rvs167p share common functions but
are not interchangeable. Their BAR domains cannot be
replaced with each other and the overexpression of one
cannot suppress the mutant phenotypes of the other.
Rvs167p also interacts with the GTPase activating
protein (GAP) Gyp5p, which is involved in ER to Golgi
vesicle trafficking. BAR domains form dimers that bind
to membranes, induce membrane bending and curvature, and
may also be involved in protein-protein interactions.
Length = 216
Score = 29.1 bits (66), Expect = 4.1
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 160 IVHPNDHVNRSQSSNDTFPTVMHIAAAMET-NSRLIPNLKVLHNSLHSKSVEFKDIVK 216
IV P + V + T + A+E L+ L+ + + E K +K
Sbjct: 53 IVGPKESVGSHPAPESTLARLSRYVKALEELKKELLEELEFFEERVILPAKELKKYIK 110
>gnl|CDD|200222 TIGR02965, xanthine_xdhB, xanthine dehydrogenase, molybdopterin
binding subunit. Members of the protein family are the
molybdopterin-containing large subunit (or, in,
eukaryotes, the molybdopterin-binding domain) of
xanthine dehydrogenase, and enzyme that reduces the
purine pool by catabolizing xanthine to urate. This
model is based primarily on bacterial sequences; it does
not manage to include all eukaryotic xanthine
dehydrogenases and thereby discriminate them from the
closely related enzyme aldehyde dehydrogenase [Purines,
pyrimidines, nucleosides, and nucleotides, Other].
Length = 758
Score = 29.6 bits (67), Expect = 4.2
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 10/44 (22%)
Query: 257 QLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPF----VTAEN 296
L GGT +G GLNT K+A VAEE + +TA +
Sbjct: 461 HLNHGGTEMGQGLNT------KVAQVVAEEFQVDIDRVKITATD 498
>gnl|CDD|227510 COG5183, SSM4, Protein involved in mRNA turnover and stability [RNA
processing and modification].
Length = 1175
Score = 29.2 bits (65), Expect = 5.3
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 170 SQSSNDTFPTVMHIAAAMETN-SRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPL 228
S S+N+ V + + N SR + N++ + ++ H S F+ IV +
Sbjct: 259 SDSNNNVINPVSDNVPSRDMNDSRNVENVRPVRSNDHMNSFLFRPIVDSIS-------GM 311
Query: 229 TLGQEFS 235
TL FS
Sbjct: 312 TLPDSFS 318
>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog
Ypt1. Rab1/Ypt1 subfamily. Rab1 is found in every
eukaryote and is a key regulatory component for the
transport of vesicles from the ER to the Golgi
apparatus. Studies on mutations of Ypt1, the yeast
homolog of Rab1, showed that this protein is necessary
for the budding of vesicles of the ER as well as for
their transport to, and fusion with, the Golgi
apparatus. GTPase activating proteins (GAPs) interact
with GTP-bound Rab and accelerate the hydrolysis of GTP
to GDP. Guanine nucleotide exchange factors (GEFs)
interact with GDP-bound Rabs to promote the formation of
the GTP-bound state. Rabs are further regulated by
guanine nucleotide dissociation inhibitors (GDIs), which
facilitate Rab recycling by masking C-terminal lipid
binding and promoting cytosolic localization. Most Rab
GTPases contain a lipid modification site at the
C-terminus, with sequence motifs CC, CXC, or CCX. Lipid
binding is essential for membrane attachment, a key
feature of most Rab proteins. Due to the presence of
truncated sequences in this CD, the lipid modification
site is not available for annotation.
Length = 166
Score = 28.1 bits (63), Expect = 5.9
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 269 LNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGAL 314
L KK D A A+E +PF+ K A +AF+ + +
Sbjct: 119 LTDKKVVDYTEAKEFADELGIPFLETSAK-NATNVEEAFMTMAREI 163
>gnl|CDD|178459 PLN02868, PLN02868, acyl-CoA thioesterase family protein.
Length = 413
Score = 28.9 bits (65), Expect = 6.1
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 318 AASLMKIANDVRLLGSGPRCGLGELILPENEPG 350
++SL KIA V G GE ++ E EPG
Sbjct: 21 SSSLKKIAEVVVPKRYGK----GEYVVREGEPG 49
>gnl|CDD|235510 PRK05573, rplU, 50S ribosomal protein L21; Validated.
Length = 103
Score = 26.6 bits (60), Expect = 9.6
Identities = 6/13 (46%), Positives = 11/13 (84%)
Query: 149 AEILGHKRGEKIV 161
AE++ H RG+K++
Sbjct: 61 AEVVEHGRGKKVI 73
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.132 0.385
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,676,980
Number of extensions: 2065291
Number of successful extensions: 1824
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1731
Number of HSP's successfully gapped: 79
Length of query: 439
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 339
Effective length of database: 6,502,202
Effective search space: 2204246478
Effective search space used: 2204246478
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)