Your job contains 1 sequence.
>013616
MLIDGPKQGNVIPDGFNPNYLKVYYGRLFPHADIFKWMSYGNDGRHPACDKSYFGRREFS
FTLDNDIYLRFQSFNSESELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNVFAPVE
RELIFDIDITDYDDVRYCCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRR
GVHCWVCDGKARRLTNEQRGAIADYFRVYKGNENSNKKVSFPGPLHPFLVRSYTEVLREF
FEEKLLLSQNLFSTEERYEKILSMIPDESVTSELRGKWQENRRSSNSKEDINFFRWEQLK
NTLQSGKQKVQGLRRCVEEIVFAFTYPRLDMEVSKHRNHLLKAPFCVHPKTGRVCIPIDP
KDCEEFDPTTVPTLSELLRELNTGDSRMDVDNEWEKTSLGKSIRFFRSSFLQPLLKSCKE
EMESGYKAKIQQTKNSLSW
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 013616
(439 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|G8JKZ3 - symbol:PRIM1 "DNA primase" species:991... 916 6.3e-92 1
UNIPROTKB|P49642 - symbol:PRIM1 "DNA primase small subuni... 902 1.9e-90 1
ASPGD|ASPL0000041026 - symbol:AN3033 species:162425 "Emer... 877 2.1e-90 2
ZFIN|ZDB-GENE-990603-6 - symbol:prim1 "primase polypeptid... 899 4.0e-90 1
MGI|MGI:97757 - symbol:Prim1 "DNA primase, p49 subunit" s... 898 5.1e-90 1
UNIPROTKB|I3LGL1 - symbol:LOC100622817 "DNA primase" spec... 885 1.2e-88 1
UNIPROTKB|F1LQA1 - symbol:Prim1 "DNA primase" species:101... 860 5.4e-86 1
FB|FBgn0011762 - symbol:DNApol-alpha50 "DNA polymerase al... 839 9.1e-84 1
POMBASE|SPAC6B12.10c - symbol:spp1 "DNA primase catalytic... 808 1.8e-80 1
UNIPROTKB|F8VNY2 - symbol:PRIM1 "DNA primase" species:960... 791 1.1e-78 1
CGD|CAL0004759 - symbol:orf19.4030 species:5476 "Candida ... 712 5.2e-75 2
SGD|S000001447 - symbol:PRI1 "Subunit of DNA primase" spe... 688 9.2e-68 1
WB|WBGene00004180 - symbol:pri-1 species:6239 "Caenorhabd... 605 5.7e-59 1
UNIPROTKB|F1LNK6 - symbol:Prim1 "DNA primase" species:101... 577 5.3e-56 1
RGD|621380 - symbol:Prim1 "DNA primase, p49 subunit" spec... 574 1.1e-55 1
DICTYBASE|DDB_G0285853 - symbol:polA4 "DNA primase small ... 557 7.0e-54 1
WB|WBGene00020761 - symbol:T24C4.5 species:6239 "Caenorha... 454 5.7e-43 1
UNIPROTKB|F8VSB2 - symbol:PRIM1 "DNA primase small subuni... 402 1.9e-37 1
UNIPROTKB|F1PDB3 - symbol:PRIM1 "Uncharacterized protein"... 397 6.3e-37 1
UNIPROTKB|H0YIP2 - symbol:PRIM1 "DNA primase small subuni... 265 1.4e-22 1
UNIPROTKB|F1SL96 - symbol:F1SL96 "Uncharacterized protein... 229 1.5e-18 1
>UNIPROTKB|G8JKZ3 [details] [associations]
symbol:PRIM1 "DNA primase" species:9913 "Bos taurus"
[GO:0030894 "replisome" evidence=IEA] [GO:0003896 "DNA primase
activity" evidence=IEA] InterPro:IPR002755 InterPro:IPR014052
Pfam:PF01896 GO:GO:0003896 GO:GO:0030894
GeneTree:ENSGT00390000011466 KO:K02684 OMA:GRRGAHC
PANTHER:PTHR10536 TIGRFAMs:TIGR00335 CTD:5557 EMBL:DAAA02013526
RefSeq:NP_001139337.1 UniGene:Bt.92437 Ensembl:ENSBTAT00000027860
GeneID:506240 KEGG:bta:506240 Uniprot:G8JKZ3
Length = 418
Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
Identities = 185/416 (44%), Positives = 272/416 (65%)
Query: 18 PNYLKVYYGRLFPHADIFKWMSYGNDGRHPACDKSYFGRREFSFTLDNDIYLRFQSFNSE 77
P LK+YY RLFP+ ++W++YG K+YF REFSFTL +DIY+R+QSFN++
Sbjct: 10 PELLKLYYRRLFPYGQYYRWLNYGG------VVKNYFQHREFSFTLKDDIYIRYQSFNNQ 63
Query: 78 SELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNVFAPVERELIFDIDITDYDDVRY 137
S+LE +++ P KIDIG VYS P + + G F E+EL+FDID+TDYDDVR
Sbjct: 64 SDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGA---FQAQEKELVFDIDMTDYDDVRR 120
Query: 138 CCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRGVHCWVCDGKARRLTNE 197
CCS AD+C +CW LMT+AI +ID AL++DFGF H LWVYSGRRGVHCWVCD R+L++
Sbjct: 121 CCSSADICSKCWTLMTMAIHIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSA 180
Query: 198 QRGAIADYFRVYKGNENSNKKVSFPGPLHPFLVRSYTEVLREFFEEKLLLSQNLFSTEER 257
R I +Y + KG ++ KKV +HPF VR +++++FE+ L+ Q++ ++
Sbjct: 181 VRSGIVEYLSLVKGGQDVKKKVHLSEKIHPF-VRKSINIIKKYFEQYALVDQDILENKQS 239
Query: 258 YEKILSMIPDESVTSELRGKWQENRRSSNSKEDINFFRWEQLKNTLQSGKQKVQGLRRC- 316
++KIL+++P E+V EL+ +Q R SNS + RWE LKNT+ QK +C
Sbjct: 240 WDKILALVP-ETVRDELQQGFQ---RQSNSPQ-----RWETLKNTINK-YQKNNKNDKCG 289
Query: 317 --VE-EIVFAFTYPRLDMEVSKHRNHLLKAPFCVHPKTGRVCIPIDPKDCEEFDPTTVPT 373
+E EI+ + +PRLD+ VSK NHLLK+PF VHPKTGR+ +PID + ++FDP TVPT
Sbjct: 290 LWLEWEIMLQYCFPRLDINVSKGINHLLKSPFSVHPKTGRISVPIDLQKVDQFDPFTVPT 349
Query: 374 LSELLRELNTGDSRMDVDNEWEKTSLGKSIRFFRSSFLQPLLKSCKEEMESGYKAK 429
+S + EL+ ++ + +N E + ++ + R+S L P +K ++ +E+ K++
Sbjct: 350 ISSICHELDVISTKEEKENGTESDTKHRTRDYKRTS-LAPFVKVFEQFLENLDKSR 404
>UNIPROTKB|P49642 [details] [associations]
symbol:PRIM1 "DNA primase small subunit" species:9606 "Homo
sapiens" [GO:0003896 "DNA primase activity" evidence=IEA]
[GO:0030894 "replisome" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006269 "DNA replication, synthesis of
RNA primer" evidence=TAS] [GO:0000082 "G1/S transition of mitotic
cell cycle" evidence=TAS] [GO:0000084 "S phase of mitotic cell
cycle" evidence=TAS] [GO:0000216 "M/G1 transition of mitotic cell
cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006270 "DNA replication
initiation" evidence=TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=TAS] [GO:0032201 "telomere
maintenance via semi-conservative replication" evidence=TAS]
InterPro:IPR002755 InterPro:IPR014052 Pfam:PF01896
Reactome:REACT_115566 GO:GO:0005654 Reactome:REACT_21300
GO:GO:0046872 GO:GO:0000082 GO:GO:0006270 GO:GO:0000216
GO:GO:0000084 GO:GO:0000722 GO:GO:0003896 Reactome:REACT_383
GO:GO:0006271 GO:GO:0032201 GO:GO:0030894 eggNOG:COG1467
HOGENOM:HOG000196041 KO:K02684 PANTHER:PTHR10536 TIGRFAMs:TIGR00335
EMBL:X74330 EMBL:BC005266 EMBL:U89689 IPI:IPI00027704 PIR:S45630
RefSeq:NP_000937.1 UniGene:Hs.534339 ProteinModelPortal:P49642
IntAct:P49642 MINT:MINT-234425 STRING:P49642 PhosphoSite:P49642
DMDM:1346792 PaxDb:P49642 PRIDE:P49642 DNASU:5557
Ensembl:ENST00000338193 GeneID:5557 KEGG:hsa:5557 UCSC:uc001smd.3
CTD:5557 GeneCards:GC12M057125 HGNC:HGNC:9369 HPA:HPA040010
MIM:176635 neXtProt:NX_P49642 PharmGKB:PA33739 HOVERGEN:HBG003006
InParanoid:P49642 OrthoDB:EOG4WQ12H ChiTaRS:PRIM1 GenomeRNAi:5557
NextBio:21534 ArrayExpress:P49642 Bgee:P49642 CleanEx:HS_PRIM1
Genevestigator:P49642 GermOnline:ENSG00000198056 Uniprot:P49642
Length = 420
Score = 902 (322.6 bits), Expect = 1.9e-90, P = 1.9e-90
Identities = 185/421 (43%), Positives = 272/421 (64%)
Query: 18 PNYLKVYYGRLFPHADIFKWMSYGNDGRHPACDKSYFGRREFSFTLDNDIYLRFQSFNSE 77
P LK+YY RLFP++ ++W++YG K+YF REFSFTL +DIY+R+QSFN++
Sbjct: 10 PELLKLYYRRLFPYSQYYRWLNYGG------VIKNYFQHREFSFTLKDDIYIRYQSFNNQ 63
Query: 78 SELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNVFAPVERELIFDIDITDYDDVRY 137
S+LE +++ P KIDIG VYS P + + G F E+EL+FDID+TDYDDVR
Sbjct: 64 SDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGA---FQAQEKELVFDIDMTDYDDVRR 120
Query: 138 CCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRGVHCWVCDGKARRLTNE 197
CCS AD+C +CW LMT+AI++ID AL++DFGF H LWVYSGRRGVHCWVCD R+L++
Sbjct: 121 CCSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSA 180
Query: 198 QRGAIADYFRVYKGNENSNKKVSFPGPLHPFLVRSYTEVLREFFEEKLLLSQNLFSTEER 257
R I +Y + KG ++ KKV +HPF +R +++++FEE L++Q++ +E
Sbjct: 181 VRSGIVEYLSLVKGGQDVKKKVHLSEKIHPF-IRKSINIIKKYFEEYALVNQDILENKES 239
Query: 258 YEKILSMIPDESVTSELRGKWQENRRSSNSKEDINFFRWEQLKNTLQSGKQKVQGLRR-- 315
++KIL+++P E++ EL+ +Q +S NS + RWE LK + ++ +
Sbjct: 240 WDKILALVP-ETIHDELQQSFQ---KSHNSLQ-----RWEHLKKVASRYQNNIKNDKYGP 290
Query: 316 CVE-EIVFAFTYPRLDMEVSKHRNHLLKAPFCVHPKTGRVCIPIDPKDCEEFDPTTVPTL 374
+E EI+ + +PRLD+ VSK NHLLK+PF VHPKTGR+ +PID + ++FDP TVPT+
Sbjct: 291 WLEWEIMLQYCFPRLDINVSKGINHLLKSPFSVHPKTGRISVPIDLQKVDQFDPFTVPTI 350
Query: 375 SELLRELNT----------GDSRMDVDN---EWEKTSLGKSIRFFRSSFLQPLLKSCKEE 421
S + REL+ ++ DV + +++KTSL ++ F FL+ L KS K E
Sbjct: 351 SFICRELDAISTNEEEKEENEAESDVKHRTRDYKKTSLAPYVKVFEH-FLENLDKSRKGE 409
Query: 422 M 422
+
Sbjct: 410 L 410
>ASPGD|ASPL0000041026 [details] [associations]
symbol:AN3033 species:162425 "Emericella nidulans"
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003896 "DNA primase activity"
evidence=IEA] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR002755 InterPro:IPR014052 Pfam:PF01896 EMBL:BN001306
EMBL:AACD01000051 GO:GO:0003896 GO:GO:0030894 eggNOG:COG1467
HOGENOM:HOG000196041 KO:K02684 PANTHER:PTHR10536 TIGRFAMs:TIGR00335
OrthoDB:EOG4CVKGS RefSeq:XP_660637.1 ProteinModelPortal:Q5B8U7
STRING:Q5B8U7 EnsemblFungi:CADANIAT00010046 GeneID:2874466
KEGG:ani:AN3033.2 OMA:EIGPVYN Uniprot:Q5B8U7
Length = 521
Score = 877 (313.8 bits), Expect = 2.1e-90, Sum P(2) = 2.1e-90
Identities = 168/365 (46%), Positives = 240/365 (65%)
Query: 24 YYGRLFPHADIFKWMSYGNDGRHPACDKSYFGRREFSFTLDNDIYLRFQSFNSESELENS 83
+Y RLFP +F+W+ N G P+ D FG REF+ TL ND YLR+QS+ +
Sbjct: 95 FYQRLFPFRYLFQWL---NHGIVPSPD---FGNREFALTLQNDAYLRYQSYPTADLFRKD 148
Query: 84 IKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNVFAPVERELIFDIDITDYDDVRYCCSGAD 143
I + PS+ +IGPVY+ +P R G P+ +EL+FDID+TDYDD+R CC+ A+
Sbjct: 149 ILKMNPSRFEIGPVYNRNPRDRKTLGSGQ---LKPLAKELVFDIDLTDYDDIRTCCTKAN 205
Query: 144 VCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRGVHCWVCDGKARRLTNEQRGAIA 203
+C +CW +T+AIKV+DTALR DFGF HILWVYSGRRG H WVCD +AR L++++R IA
Sbjct: 206 ICAKCWAFVTMAIKVVDTALRQDFGFQHILWVYSGRRGAHAWVCDSRARNLSDDRRRGIA 265
Query: 204 DYFRVYKGNENSNKKVSFPGPLHPFLVRSYTEVLREFFEEKLLLSQNLFSTEERYEKILS 263
Y + +G NS K+V+ PLHP + RS E+L+ +F + L+ Q+ F++ E+ +++LS
Sbjct: 266 GYLDLVRGGTNSGKRVNLKRPLHPHMTRSL-EILKPYFVQTTLVDQDTFASPEQEQRLLS 324
Query: 264 MIPDESVTSELRGKWQE--NRRSSNSKEDINFFRWEQLKNTLQSGKQKVQGLRRCVEEIV 321
++PD+ + LR KW+ +R S+N DI+ +TL LR ++IV
Sbjct: 325 LLPDKGLNDSLRRKWESAPDRSSTNKWADIDALAKAGKSSTLNPAT-----LREAKQDIV 379
Query: 322 FAFTYPRLDMEVSKHRNHLLKAPFCVHPKTGRVCIPIDPKDCEEFDPTTVPTLSELLREL 381
+TYPRLD EVSK HLLK+PF +HP TGRVC+PID ++ E+FDP +VPT+S+LL E+
Sbjct: 380 LEYTYPRLDSEVSKKMIHLLKSPFVIHPGTGRVCVPIDIRNVEKFDPLSVPTVSQLLSEI 439
Query: 382 NTGDS 386
++ DS
Sbjct: 440 DSWDS 444
Score = 44 (20.5 bits), Expect = 2.1e-90, Sum P(2) = 2.1e-90
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 393 EWEKTSLGKSIRFFRSSFLQPLLK 416
++EKTSL I +FRS F+ L K
Sbjct: 475 DYEKTSLKPYIDYFRS-FIAGLNK 497
>ZFIN|ZDB-GENE-990603-6 [details] [associations]
symbol:prim1 "primase polypeptide 1" species:7955
"Danio rerio" [GO:0003896 "DNA primase activity" evidence=IEA]
[GO:0006269 "DNA replication, synthesis of RNA primer"
evidence=IEA] [GO:0030894 "replisome" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] InterPro:IPR002755 InterPro:IPR014052 Pfam:PF01896
ZFIN:ZDB-GENE-990603-6 GO:GO:0003896 GO:GO:0030894 KO:K02684
PANTHER:PTHR10536 TIGRFAMs:TIGR00335 CTD:5557 HOVERGEN:HBG003006
EMBL:BC047856 IPI:IPI00914406 RefSeq:NP_958856.1 UniGene:Dr.160075
ProteinModelPortal:Q7ZUR8 STRING:Q7ZUR8 GeneID:30440 KEGG:dre:30440
NextBio:20806838 ArrayExpress:Q7ZUR8 Uniprot:Q7ZUR8
Length = 425
Score = 899 (321.5 bits), Expect = 4.0e-90, P = 4.0e-90
Identities = 187/424 (44%), Positives = 266/424 (62%)
Query: 18 PNYLKVYYGRLFPHADIFKWMSYGNDGRHPACDKSYFGRREFSFTLDNDIYLRFQSFNSE 77
P+ L +YY RLFP + F+W+SYG K+YF REFSFTL +DIY+R+QSF+S+
Sbjct: 12 PDLLPLYYRRLFPFSQYFRWLSYGG------VSKNYFQNREFSFTLKDDIYVRYQSFSSQ 65
Query: 78 SELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNVFAPVERELIFDIDITDYDDVRY 137
+ELE +++ P KIDIG VYS P++ + G F +E+EL+FDID+TDYDDVR
Sbjct: 66 NELEKEMQKMVPYKIDIGAVYSHRPSQHNTVKSG---TFQALEKELVFDIDMTDYDDVRR 122
Query: 138 CCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRGVHCWVCDGKARRLTNE 197
CCS AD+C +CW LMT+AI+++D ALR+DFGF H+LWVYSGRRGVHCWVCD AR+L+
Sbjct: 123 CCSAADICSKCWTLMTIAIRILDRALREDFGFHHLLWVYSGRRGVHCWVCDDAARKLSVA 182
Query: 198 QRGAIADYFRVYKGNENSNKKVSFPGPLHPFLVRSYTEVLREFFEEKLLLSQNLFSTEER 257
R A+A+Y + KG E + +KV P+HPF+ RS + V+ +F + ++ Q++ +E
Sbjct: 183 ARSAVAEYLSLVKGGEETLRKVVLSDPIHPFISRSLS-VVEHYFPQYAIVDQDILGNKES 241
Query: 258 YEKILSMIPDESVTSELRGKWQENRRSSNSKEDINFFRWEQLKNTLQSGKQKVQ-GLRRC 316
+K+L+++P E + +L +Q N KE + RW++L+ + K + G +
Sbjct: 242 VDKVLALLP-EDIKKDLIEYYQ------NHKEPMK--RWDRLRQLVDHKKSSSKKGGQYY 292
Query: 317 VEEIVFAFTYPRLDMEVSKHRNHLLKAPFCVHPKTGRVCIPIDPKDCEEFDPTTVPTLSE 376
+EI+ + YPRLD+ VSK NHLLK+PF VHPKTGR+ +PID K+ + FDP VPT+S
Sbjct: 293 DKEIMLQYCYPRLDVNVSKGVNHLLKSPFSVHPKTGRISVPIDLKELDTFDPFEVPTISL 352
Query: 377 LLRELNT--GDSRMDVD-----NEWE-----------KTSLGKSIRFFRSSFLQPLLKSC 418
+ EL D D D NE E +TSL K ++ FL + +S
Sbjct: 353 ICEELEKPRADEAEDEDVKDKENEQEAAERRRIRDYKRTSLAKYVKVL-DRFLDSMARSR 411
Query: 419 KEEM 422
K EM
Sbjct: 412 KGEM 415
>MGI|MGI:97757 [details] [associations]
symbol:Prim1 "DNA primase, p49 subunit" species:10090 "Mus
musculus" [GO:0003896 "DNA primase activity" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006269 "DNA replication, synthesis
of RNA primer" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0030894 "replisome" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR002755
InterPro:IPR014052 Pfam:PF01896 MGI:MGI:97757 GO:GO:0046872
GO:GO:0003896 GO:GO:0030894 eggNOG:COG1467 HOGENOM:HOG000196041
KO:K02684 PANTHER:PTHR10536 TIGRFAMs:TIGR00335 CTD:5557
HOVERGEN:HBG003006 OrthoDB:EOG4WQ12H EMBL:J04620 EMBL:D13544
IPI:IPI00322337 PIR:A33269 RefSeq:NP_032947.1 UniGene:Mm.2903
ProteinModelPortal:P20664 IntAct:P20664 STRING:P20664
PhosphoSite:P20664 PRIDE:P20664 Ensembl:ENSMUST00000026461
GeneID:19075 KEGG:mmu:19075 InParanoid:P20664 NextBio:295606
Bgee:P20664 CleanEx:MM_PRIM1 Genevestigator:P20664
GermOnline:ENSMUSG00000025395 Uniprot:P20664
Length = 417
Score = 898 (321.2 bits), Expect = 5.1e-90, P = 5.1e-90
Identities = 187/419 (44%), Positives = 264/419 (63%)
Query: 18 PNYLKVYYGRLFPHADIFKWMSYGNDGRHPACDKSYFGRREFSFTLDNDIYLRFQSFNSE 77
P LK+YY RLFP+A ++W++YG K+YF REFSFTL +DIY+R+QSFN++
Sbjct: 10 PELLKLYYRRLFPYAQYYRWLNYGG------VTKNYFQHREFSFTLKDDIYIRYQSFNNQ 63
Query: 78 SELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNVFAPVERELIFDIDITDYDDVRY 137
SELE +++ P KIDIG VYS P + + G F E+EL+FDID+TDYDDVR
Sbjct: 64 SELEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGA---FQAQEKELVFDIDMTDYDDVRR 120
Query: 138 CCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRGVHCWVCDGKARRLTNE 197
CCS AD+C +CW LMT+A+++ID AL++DFGF H LWVYSGRRGVHCWVCD R+L++
Sbjct: 121 CCSSADICSKCWTLMTMAMRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSA 180
Query: 198 QRGAIADYFRVYKGNENSNKKVSFPGPLHPFLVRSYTEVLREFFEEKLLLSQNLFSTEER 257
R I +Y + KG ++ KKV +HPF VR +++++FEE L+ Q++ +E
Sbjct: 181 VRSGIVEYLSLVKGGQDVKKKVHLNEKVHPF-VRKSINIIKKYFEEYALVGQDILENKEN 239
Query: 258 YEKILSMIPDESVTSELRGKWQENRRSSNSKEDINFFRWEQLKNTLQSGKQ-KVQGLRRC 316
++KIL+++P E++ EL+ +Q+ S RWE L+ S + K
Sbjct: 240 WDKILALVP-ETIHDELQRGFQKFHSSPQ--------RWEHLRKVANSSQNMKNDKCGPW 290
Query: 317 VE-EIVFAFTYPRLDMEVSKHRNHLLKAPFCVHPKTGRVCIPIDPKDCEEFDPTTVPTLS 375
+E E++ + +PRLD+ VSK NHLLK+PF VHPKTGR+ +PID ++FDP TVPT+S
Sbjct: 291 LEWEVMLQYCFPRLDVNVSKGVNHLLKSPFSVHPKTGRISVPIDFHKVDQFDPFTVPTIS 350
Query: 376 ELLREL------------NTGDSRMDVDNEWEKTSLGKSIRFFRSSFLQPLLKSCKEEM 422
+ REL N DS+ V ++KTSL ++ F FL+ L KS K E+
Sbjct: 351 AICRELDMVSTHEKEKEENEADSKHRVRG-YKKTSLAPYVKVFEQ-FLENLDKSRKGEL 407
>UNIPROTKB|I3LGL1 [details] [associations]
symbol:LOC100622817 "DNA primase" species:9823 "Sus scrofa"
[GO:0030894 "replisome" evidence=IEA] [GO:0003896 "DNA primase
activity" evidence=IEA] InterPro:IPR002755 InterPro:IPR014052
Pfam:PF01896 GO:GO:0003896 GO:GO:0030894
GeneTree:ENSGT00390000011466 OMA:GRRGAHC PANTHER:PTHR10536
TIGRFAMs:TIGR00335 EMBL:FP565365 Ensembl:ENSSSCT00000026608
Uniprot:I3LGL1
Length = 385
Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
Identities = 176/369 (47%), Positives = 246/369 (66%)
Query: 18 PNYLKVYYGRLFPHADIFKWMSYGNDGRHPACDKSYFGRREFSFTLDNDIYLRFQSFNSE 77
P LK+YY RLFP+A ++W++YG K+YF REFSFTL +DIY+R+QSFN++
Sbjct: 10 PELLKLYYRRLFPYAQYYRWLNYGG------VVKNYFQHREFSFTLKDDIYIRYQSFNNQ 63
Query: 78 SELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNVFAPVERELIFDIDITDYDDVRY 137
SELE +++ P KIDIG VYS P + + G F E+EL+FDID+TDYDDVR
Sbjct: 64 SELEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGA---FQAQEKELVFDIDMTDYDDVRR 120
Query: 138 CCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRGVHCWVCDGKARRLTNE 197
CCS AD+C +CW LMT+AI +ID AL++DFGF H LWVYSGRRGVHCWVCD R+L++
Sbjct: 121 CCSSADICSKCWTLMTMAIHIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSA 180
Query: 198 QRGAIADYFRVYKGNENSNKKVSFPGPLHPFLVRSYTEVLREFFEEKLLLSQNLFSTEER 257
R I +Y + KG ++ KKV +HPF VR +++++FEE L+ QN+ +E
Sbjct: 181 VRSGIVEYLSLVKGGQDVKKKVHLNEKIHPF-VRKSINIIKKYFEEYALVGQNILENKES 239
Query: 258 YEKILSMIPDESVTSELRGKWQENRRSSNSKEDINFFRWEQLKNTLQSGKQKVQGLRRC- 316
++KIL+++P E++ EL+ +Q+++ NS + RWE LK S Q +C
Sbjct: 240 WDKILALVP-ETMHDELQQSFQKHQ---NSLQ-----RWEYLKKAA-SRYQNNSKNDKCG 289
Query: 317 --VE-EIVFAFTYPRLDMEVSKHRNHLLKAPFCVHPKTGRVCIPIDPKDCEEFDPTTVPT 373
+E EI+ + +PRLD+ VSK NHLLK+PF VHPKTGR+ +PID + ++FDP TVPT
Sbjct: 290 PWLEWEIMLQYCFPRLDINVSKGINHLLKSPFSVHPKTGRISVPIDLQKVDQFDPFTVPT 349
Query: 374 LSELLRELN 382
+S + EL+
Sbjct: 350 ISSICHELD 358
>UNIPROTKB|F1LQA1 [details] [associations]
symbol:Prim1 "DNA primase" species:10116 "Rattus
norvegicus" [GO:0003896 "DNA primase activity" evidence=IEA]
[GO:0030894 "replisome" evidence=IEA] InterPro:IPR002755
InterPro:IPR014052 Pfam:PF01896 RGD:621380 GO:GO:0003896
GO:GO:0030894 PANTHER:PTHR10536 TIGRFAMs:TIGR00335 IPI:IPI00551777
Ensembl:ENSRNOT00000045511 ArrayExpress:F1LQA1 Uniprot:F1LQA1
Length = 417
Score = 860 (307.8 bits), Expect = 5.4e-86, P = 5.4e-86
Identities = 174/416 (41%), Positives = 265/416 (63%)
Query: 18 PNYLKVYYGRLFPHADIFKWMSYGNDGRHPACDKSYFGRREFSFTLDNDIYLRFQSFNSE 77
P LK+YY RLFP+A ++W++YG K+YF REFSFTL +DIY+R+QSFN++
Sbjct: 10 PELLKLYYRRLFPYAQYYRWLNYGG------VTKNYFQHREFSFTLKDDIYIRYQSFNNQ 63
Query: 78 SELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNVFAPVERELIFDIDITDYDDVRY 137
S +++ +++G VYS P++ + G F E+EL+FDID+TDYDDVR
Sbjct: 64 SXXXKEMQKTNTILLELGAVYSHRPSQHNTVKLGA---FQAQEKELVFDIDMTDYDDVRR 120
Query: 138 CCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRGVHCWVCDGKARRLTNE 197
CCS AD+C +CW LMT+A+++ID AL++DFGF H LWVYSGRRGVHCWVCD R+L++
Sbjct: 121 CCSSADICSKCWTLMTMAMRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSA 180
Query: 198 QRGAIADYFRVYKGNENSNKKVSFPGPLHPFLVRSYTEVLREFFEEKLLLSQNLFSTEER 257
R I +Y + KG + KKV +HPF VR +++++FEE L+ Q++ +E
Sbjct: 181 VRSGIVEYLSLIKGGHDVKKKVHLNEKVHPF-VRKSINIIKKYFEEYALVDQDILENQEN 239
Query: 258 YEKILSMIPDESVTSELRGKWQENRRSSNSKEDINFFRWEQLKNTLQSGKQKVQGLRRC- 316
++KIL+++P E++ EL+ +Q R +S + RWE L+ + S Q + +C
Sbjct: 240 WDKILALVP-ENIHDELQKGFQ---RFHSSPQ-----RWEYLRK-VASAPQNTKN-DKCG 288
Query: 317 --VE-EIVFAFTYPRLDMEVSKHRNHLLKAPFCVHPKTGRVCIPIDPKDCEEFDPTTVPT 373
+E EI+ + +PRLD+ VSK NHLLK+PF VHPKTGR+ +PID + ++FDP VPT
Sbjct: 289 PWLEWEIMLQYCFPRLDINVSKGVNHLLKSPFSVHPKTGRISVPIDFQKVDQFDPFVVPT 348
Query: 374 LSELLRELNTGDSRMDVDNEWEKTSLGKSIRFFRSSFLQPLLKSCKEEMESGYKAK 429
+S + REL+ S + + E +T +R ++ + L P +K ++ +E+ K++
Sbjct: 349 ISAICRELDVV-STTEKEKEENETDSRHRVRDYKRTSLAPYVKVFEQFLENLDKSR 403
>FB|FBgn0011762 [details] [associations]
symbol:DNApol-alpha50 "DNA polymerase alpha 50kD"
species:7227 "Drosophila melanogaster" [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=ISS;NAS;IDA] [GO:0006260 "DNA
replication" evidence=NAS;IDA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS;NAS] [GO:0006269 "DNA
replication, synthesis of RNA primer" evidence=IEA;ISS] [GO:0003896
"DNA primase activity" evidence=IEA;NAS] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR002755 InterPro:IPR014052 Pfam:PF01896
EMBL:AE014296 GO:GO:0022008 GO:GO:0046872 GO:GO:0003896
GO:GO:0003887 GO:GO:0006269 GO:GO:0005658 eggNOG:COG1467
GeneTree:ENSGT00390000011466 KO:K02684 OMA:GRRGAHC
PANTHER:PTHR10536 TIGRFAMs:TIGR00335 EMBL:X79801 EMBL:AY071217
PIR:A55070 RefSeq:NP_523972.2 UniGene:Dm.6051
ProteinModelPortal:Q24317 DIP:DIP-20251N IntAct:Q24317
MINT:MINT-776576 STRING:Q24317 PaxDb:Q24317
EnsemblMetazoa:FBtr0076603 GeneID:38942 KEGG:dme:Dmel_CG7108
CTD:38942 FlyBase:FBgn0011762 InParanoid:Q24317 OrthoDB:EOG42NGFV
PhylomeDB:Q24317 GenomeRNAi:38942 NextBio:811126 Bgee:Q24317
GermOnline:CG7108 Uniprot:Q24317
Length = 438
Score = 839 (300.4 bits), Expect = 9.1e-84, P = 9.1e-84
Identities = 178/433 (41%), Positives = 252/433 (58%)
Query: 6 PKQGNVIPDGFNPNYLK----VYYGRLFPHADIFKWMSYGNDGRHPACDKSYFGRREFSF 61
P+Q +NP L+ VYY RLFPH ++W+SYG+ + + F RE SF
Sbjct: 13 PQQQTTAVHAYNPEVLQDMLPVYYRRLFPHLPFYRWLSYGSS------EDAIFSNREISF 66
Query: 62 TLDNDIYLRFQSFNSESELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNVFAPVER 121
TL +DIY+R+ F++++ELE I + P KIDIGPV P K H GG PV+R
Sbjct: 67 TLQDDIYIRYLCFDTQAELEKEICSRNPIKIDIGPVMHSKP-KNHRSIPGG---LTPVQR 122
Query: 122 ELIFDIDITDYDDVRYCCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRG 181
EL+FDID+TDYD+VR CCSGA VCL+CW M +A +V+D ALR+DFGF+HI+W++SGRRG
Sbjct: 123 ELVFDIDMTDYDEVRTCCSGAGVCLKCWKFMVLAARVLDVALREDFGFEHIIWIFSGRRG 182
Query: 182 VHCWVCDGKARRLTNEQRGAIADYFRV--YKGNENSNK-KVSFPGPLHPFLVRSYTEVLR 238
+HCWVCD +AR L R A+A+Y + Y N + S H L R+ +++
Sbjct: 183 IHCWVCDYQARHLDGRGRYAVAEYLNIITYASFAGGNSPRCSMGDRPHHSLKRAL-KIVE 241
Query: 239 EFFEEKLLLSQNLFSTEERYEKILSMIPDESVTSELRGKWQENRRSSNSKEDI--NFFRW 296
FEE +L QNLF T + K+L+M+ D++ EL Q+N + +F ++
Sbjct: 242 PMFEEIVLEDQNLFGTPKGVTKLLNMVHDDAARGELESYMQKNLEDGAHSRLVWESFIKY 301
Query: 297 EQLKNTLQSGKQKVQGLRRCVEEIVFAFTYPRLDMEVSKHRNHLLKAPFCVHPKTGRVCI 356
T + + L+ V EI YPRLD+ V++ NHLLKAPFC+HP TG+VC+
Sbjct: 302 ANSMRTSTTSAWS-RKLKNIVAEIQLGLLYPRLDINVTRGFNHLLKAPFCIHPATGKVCV 360
Query: 357 PIDPKDCEEFDPTTVPTLSELLRELNTGDSR----MDVDNE------WEKTSLGKSIRFF 406
P +FDPTTVPT+++LL E+N D + M+ + +KTS+ K + F
Sbjct: 361 PFSVSAVAKFDPTTVPTITQLLHEINAFDDKSKSYMEAPEDKSRIKDHKKTSMFKGVVVF 420
Query: 407 RSSFLQPLLKSCK 419
FL+ L +S K
Sbjct: 421 EE-FLRKLERSQK 432
>POMBASE|SPAC6B12.10c [details] [associations]
symbol:spp1 "DNA primase catalytic subunit Spp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0003896 "DNA primase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=TAS] [GO:0006269 "DNA
replication, synthesis of RNA primer" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR002755 InterPro:IPR014052
Pfam:PF01896 PomBase:SPAC6B12.10c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0000790 GO:GO:0000723
GO:GO:0003896 GO:GO:0005658 eggNOG:COG1467 HOGENOM:HOG000196041
KO:K02684 OMA:GRRGAHC PANTHER:PTHR10536 TIGRFAMs:TIGR00335
PIR:T39017 RefSeq:NP_593765.1 ProteinModelPortal:O14215
IntAct:O14215 STRING:O14215 EnsemblFungi:SPAC6B12.10c.1
GeneID:2543323 KEGG:spo:SPAC6B12.10c OrthoDB:EOG4CVKGS
NextBio:20804339 Uniprot:O14215
Length = 454
Score = 808 (289.5 bits), Expect = 1.8e-80, P = 1.8e-80
Identities = 162/388 (41%), Positives = 238/388 (61%)
Query: 3 IDGPKQGNVIPDGFNPNYLKVYYGRLFPHADIFKWMSYGNDGRHPACDKSYFGRREFSFT 62
+DG KQG V + + YY LFP +F+W+++G P F REF+FT
Sbjct: 22 LDGAKQGAV-----DSETMIQYYRHLFPWKYLFQWLNHG-----PVVTND-FAHREFAFT 70
Query: 63 LDNDIYLRFQSFNSESELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNVFAPVERE 122
L ND Y+R+ SF++ EL+ CPS+ ++GPVYS +P R + + F P+++E
Sbjct: 71 LPNDAYIRYLSFSNWEELKKEALNLCPSRFEVGPVYSANPRDRKTIRK---STFHPLKKE 127
Query: 123 LIFDIDITDYDDVRYCCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRGV 182
L+FDID+TDYDDVR CCS ++C +CWP +T+A++V+D +DFGF HILWVYSGRRG+
Sbjct: 128 LVFDIDMTDYDDVRTCCSKTNICEKCWPFITIAVQVLDICFHEDFGFKHILWVYSGRRGI 187
Query: 183 HCWVCDGKARRLTNEQRGAIADYFRVYKGNENSNKKV--SFPGPLHPFLVRSYTEVLREF 240
H W+CD A L + R IA Y +V GN ++ + PLHP L RS +L+
Sbjct: 188 HAWICDEIACSLDDRSRRMIASYLQVVVGNPQGGVRLINNLKRPLHPHLTRSLN-ILKSA 246
Query: 241 FEEKLLLSQNLFSTEERYEKILSMIPDESVTSELRGKWQ-ENRRSSNSKEDINFFRWEQL 299
F + +L Q+ ++++E E +L ++PD+ + S LR KW+ + RSS +K W +
Sbjct: 247 FVKIVLEDQDPWASKEGAENLLKLLPDKDLASALRKKWEVDPERSSKNK-------WSDI 299
Query: 300 KNTLQSGKQKVQGLRRCV-----EEIVFAFTYPRLDMEVSKHRNHLLKAPFCVHPKTGRV 354
L SG + + V ++IV + YPRLD+EVS+H NHLLK+PFCVHP T RV
Sbjct: 300 DTVLASGS--IASISPSVIAIAKQDIVLTYLYPRLDVEVSRHLNHLLKSPFCVHPGTSRV 357
Query: 355 CIPIDPKDCEEFDPTTVPTLSELLRELN 382
C+PID + + F+P VPT+++LL+EL+
Sbjct: 358 CVPIDIERMDSFNPLKVPTVNDLLQELD 385
>UNIPROTKB|F8VNY2 [details] [associations]
symbol:PRIM1 "DNA primase" species:9606 "Homo sapiens"
[GO:0003896 "DNA primase activity" evidence=IEA] [GO:0030894
"replisome" evidence=IEA] InterPro:IPR002755 InterPro:IPR014052
Pfam:PF01896 GO:GO:0003896 GO:GO:0030894 EMBL:AC117378
PANTHER:PTHR10536 TIGRFAMs:TIGR00335 HGNC:HGNC:9369 ChiTaRS:PRIM1
IPI:IPI01021236 ProteinModelPortal:F8VNY2 Ensembl:ENST00000550770
ArrayExpress:F8VNY2 Bgee:F8VNY2 Uniprot:F8VNY2
Length = 328
Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
Identities = 155/336 (46%), Positives = 224/336 (66%)
Query: 18 PNYLKVYYGRLFPHADIFKWMSYGN-DGRHPACDKSYFGRREFSFTLDNDIYLRFQSFNS 76
P LK+YY RLFP++ ++W++YG DG K+YF REFSFTL +DIY+R+QSFN+
Sbjct: 10 PELLKLYYRRLFPYSQYYRWLNYGGGDG----VIKNYFQHREFSFTLKDDIYIRYQSFNN 65
Query: 77 ESELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNVFAPVERELIFDIDITDYDDVR 136
+S+LE +++ P KIDIG VYS P + + G F E+EL+FDID+TDYDDVR
Sbjct: 66 QSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGA---FQAQEKELVFDIDMTDYDDVR 122
Query: 137 YCCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRGVHCWVCDGKARRLTN 196
CCS AD+C +CW LMT+AI++ID AL++DFGF H LWVYSGRRGVHCWVCD R+L++
Sbjct: 123 RCCSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSS 182
Query: 197 EQRGAIADYFRVYKGNENSNKKVSFPGPLHPFLVRSYTEVLREFFEEKLLLSQNLFSTEE 256
R I +Y + KG ++ KKV +HPF +R +++++FEE L++Q++ +E
Sbjct: 183 AVRSGIVEYLSLVKGGQDVKKKVHLSEKIHPF-IRKSINIIKKYFEEYALVNQDILENKE 241
Query: 257 RYEKILSMIPDESVTSELRGKWQENRRSSNSKEDINFFRWEQLKNTLQSGKQKVQGLRR- 315
++KIL+++P E++ EL+ +Q +S NS + RWE LK + ++ +
Sbjct: 242 SWDKILALVP-ETIHDELQQSFQ---KSHNSLQ-----RWEHLKKVASRYQNNIKNDKYG 292
Query: 316 -CVE-EIVFAFTYPRLDMEVSKHRNHLLKAPFCVHP 349
+E EI+ + +PRLD+ VSK NHLLK+PF VHP
Sbjct: 293 PWLEWEIMLQYCFPRLDINVSKGINHLLKSPFSVHP 328
>CGD|CAL0004759 [details] [associations]
symbol:orf19.4030 species:5476 "Candida albicans" [GO:0005658
"alpha DNA polymerase:primase complex" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003896 "DNA
primase activity" evidence=IEA] [GO:0006269 "DNA replication,
synthesis of RNA primer" evidence=IEA] [GO:0000723 "telomere
maintenance" evidence=IEA] InterPro:IPR002755 InterPro:IPR014052
Pfam:PF01896 CGD:CAL0004759 GO:GO:0003896 EMBL:AACQ01000012
GO:GO:0030894 EMBL:AACQ01000011 eggNOG:COG1467 KO:K02684
PANTHER:PTHR10536 TIGRFAMs:TIGR00335 RefSeq:XP_721938.1
RefSeq:XP_722099.1 ProteinModelPortal:Q5AJZ0 STRING:Q5AJZ0
GeneID:3636269 GeneID:3636401 KEGG:cal:CaO19.11513
KEGG:cal:CaO19.4030 Uniprot:Q5AJZ0
Length = 452
Score = 712 (255.7 bits), Expect = 5.2e-75, Sum P(2) = 5.2e-75
Identities = 150/397 (37%), Positives = 230/397 (57%)
Query: 21 LKVYYGRLFPHADIFKWMSYGNDGRHPACDKSYFGRREFSFTLDNDIYLRFQSFNSESEL 80
+K YY RL P IF+W+S+ P D F REF++ + IY R+ SF + E
Sbjct: 29 MKFYYQRLLPFRYIFQWLSHSPK---PTKD---FTMREFAYEYRSKIYQRYNSFGTLEEF 82
Query: 81 ENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNVFAPVERELIFDIDITDYDDVRYCCS 140
+ S+ P++ +IG VY ++P +R + F P +EL+FDID+TDYDD+R CC
Sbjct: 83 KKSVVTANPTRFEIGAVYKINPKERKNLPK---QAFKPESKELVFDIDLTDYDDIRTCCQ 139
Query: 141 GADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRGVHCWVCDGKARRLTNEQRG 200
G D+C +CW + V K+I+ ALR+DFGF+H++WV+SGRRG HCWV D +AR L R
Sbjct: 140 GTDICCKCWKFIQVGSKIIEAALREDFGFEHLVWVFSGRRGAHCWVSDKRARELDETSRK 199
Query: 201 AIADYFRVYKGNENSNKKVSFPGPLHPFLVRSYTEVLREFFEEKLLLSQNLFST--EE-- 256
AI DY V ++N N ++ P HP + RS+ E++++ F +L Q+ ++T EE
Sbjct: 200 AIIDYLDVLS-SKNQNGSLNIKKPFHPHVERSF-EIVKKEFLNVILQEQDPWNTTSEETK 257
Query: 257 ---RYEKILSMIPDESVTSELRGKWQENRRSSNSKEDINFFRWEQLK----NTLQSGKQK 309
+ +++L+ IP++++ EL+ KW+ S SKE +W+ + N L+S Q
Sbjct: 258 AWKQVDELLAFIPNKALQIELKNKWKGQTFGSTSKE-----KWDDISTVASNVLKSNSQV 312
Query: 310 VQGLRRCVEEIVFAFTYPRLDMEVSKHRNHLLKAPFCVHPKTGRVCIPIDP--------- 360
Q L ++I+ + YPRLD++VS+ HLLK+PFC+HP TG VC+P DP
Sbjct: 313 AQ-LTEAKKDIIIYYMYPRLDVQVSRQVIHLLKSPFCIHPGTGNVCVPFDPLKNISGNPA 371
Query: 361 KDCEEFDPTTVPTLSELLRELNTGD-SRMDVDNEWEK 396
D F+P + P L ++ EL + +R D ++ EK
Sbjct: 372 DDDYGFNPKSAPNLRKIQNELEEWEQNRSDENDSQEK 408
Score = 63 (27.2 bits), Expect = 5.2e-75, Sum P(2) = 5.2e-75
Identities = 25/78 (32%), Positives = 40/78 (51%)
Query: 359 DPKDCEE-FDPTTVPTLSELLREL--------NTGDSRMDVDNEWEKTSLGKSIRFFRSS 409
+P D + F+P + P L ++ EL + DS+ V ++EKTSL I +F +
Sbjct: 369 NPADDDYGFNPKSAPNLRKIQNELEEWEQNRSDENDSQEKVIADYEKTSLKPYIDYF-AK 427
Query: 410 FLQPLLKSCKEEMESGYK 427
F+ LLK EE++ K
Sbjct: 428 FVNNLLK---EELKGTEK 442
>SGD|S000001447 [details] [associations]
symbol:PRI1 "Subunit of DNA primase" species:4932
"Saccharomyces cerevisiae" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030894 "replisome" evidence=IEA] [GO:0006269 "DNA replication,
synthesis of RNA primer" evidence=IEA;IDA] [GO:0003896 "DNA primase
activity" evidence=IEA;IGI;IMP;IDA] [GO:0043596 "nuclear
replication fork" evidence=IDA] [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA;IMP] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IDA] [GO:0006270 "DNA
replication initiation" evidence=IC] [GO:0006273 "lagging strand
elongation" evidence=IC] InterPro:IPR002755 InterPro:IPR014052
Pfam:PF01896 SGD:S000001447 GO:GO:0005524 GO:GO:0046872
EMBL:BK006942 GO:GO:0006270 EMBL:X79743 GO:GO:0003896 GO:GO:0006273
GO:GO:0005658 EMBL:Z37996 eggNOG:COG1467
GeneTree:ENSGT00390000011466 HOGENOM:HOG000196041 KO:K02684
OMA:GRRGAHC PANTHER:PTHR10536 TIGRFAMs:TIGR00335 OrthoDB:EOG4CVKGS
EMBL:Y00458 EMBL:AY692859 PIR:S48352 RefSeq:NP_012273.1
ProteinModelPortal:P10363 DIP:DIP-2534N IntAct:P10363
MINT:MINT-572443 STRING:P10363 PaxDb:P10363 PeptideAtlas:P10363
EnsemblFungi:YIR008C GeneID:854825 KEGG:sce:YIR008C CYGD:YIR008c
NextBio:977680 Genevestigator:P10363 GermOnline:YIR008C
Uniprot:P10363
Length = 409
Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
Identities = 159/421 (37%), Positives = 237/421 (56%)
Query: 10 NVIPDGFNPNYLKVYYGRLFPHADIFKWMSYGNDGRHPACDKSYFGRREFSFTLDNDIYL 69
+V +G + + ++ YY L+P IF W+ N P+ D REF+ + Y
Sbjct: 4 SVKTNGPSSSDMEYYYKSLYPFKHIFNWL---NHSPKPSRDMI---NREFAMAFRSGAYK 57
Query: 70 RFQSFNSESELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNVFAPVERELIFDIDI 129
R+ SFNS + + I++ P + +IG +Y+ P +R + + +E+EL+FDID+
Sbjct: 58 RYNSFNSVQDFKAQIEKANPDRFEIGAIYNKPPRERDTLLK---SELKALEKELVFDIDM 114
Query: 130 TDYDDVRYCCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRGVHCWVCDG 189
DYD R CCSGA VC +CW +++A+K+ +TALR+DFG+ +WV+SGRRG HCWV D
Sbjct: 115 DDYDAFRTCCSGAQVCSKCWKFISLAMKITNTALREDFGYKDFIWVFSGRRGAHCWVSDK 174
Query: 190 KARRLTNEQRGAIADYFRVYKGNENSNKKVSFPGPLHPFLVRSYTEVLREFFEEKLLLSQ 249
+AR LT+ QR + DY V + + N++K+++ P HP L RS E L+ FF +L Q
Sbjct: 175 RARALTDVQRRNVLDYVNVIR-DRNTDKRLALKRPYHPHLARSL-EQLKPFFVSIMLEEQ 232
Query: 250 NLFSTEER-YEKILSMIPDESVTSELRGKWQENRRSSNSKEDINFFRWEQLKNTLQSG-K 307
N + ++ + +L + D+ + L+ W +N R S SKE N +Q+ +L G K
Sbjct: 233 NPWEDDQHAIQTLLPALYDKQLIDSLKKYWLDNPRRS-SKEKWNDI--DQIATSLFKGPK 289
Query: 308 QK--VQGLRRCVEEIVFAFTYPRLDMEVSKHRNHLLKAPFCVHPKTGRVCIPIDPKDCEE 365
Q + LR C E++V YP+LD+EV+K HLLKAPFC+HP TG VC+PID E
Sbjct: 290 QDSHIIKLRECKEDLVLMTLYPKLDVEVTKQTIHLLKAPFCIHPATGNVCVPID----ES 345
Query: 366 FDPTTVPTLSELLRELNTGDSRMDVDNEWEKTSLGKSIRFFR---SSFLQPLLKSCKEEM 422
F P P L +L E M+ +N+ T+L I F+ SS L+ L S K E
Sbjct: 346 FAPEKAPKLIDLQTE-------MEKNNDVSLTALQPFINQFQAYVSSLLKNELGSVKRER 398
Query: 423 E 423
E
Sbjct: 399 E 399
>WB|WBGene00004180 [details] [associations]
symbol:pri-1 species:6239 "Caenorhabditis elegans"
[GO:0003896 "DNA primase activity" evidence=IEA] [GO:0006269 "DNA
replication, synthesis of RNA primer" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0051301 "cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] InterPro:IPR002755 InterPro:IPR014052
Pfam:PF01896 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0002119 GO:GO:0046872 GO:GO:0000910 GO:GO:0040035 EMBL:Z22179
GO:GO:0003896 GO:GO:0030894 PIR:S40976 RefSeq:NP_001255015.1
ProteinModelPortal:P34471 IntAct:P34471 MINT:MINT-226566
STRING:P34471 PaxDb:P34471 EnsemblMetazoa:F58A4.4a.1
EnsemblMetazoa:F58A4.4a.2 GeneID:176358 KEGG:cel:CELE_F58A4.4
UCSC:F58A4.4 CTD:176358 WormBase:F58A4.4 eggNOG:COG1467
GeneTree:ENSGT00390000011466 HOGENOM:HOG000196041 InParanoid:P34471
KO:K02684 OMA:GRRGAHC NextBio:892232 PANTHER:PTHR10536
TIGRFAMs:TIGR00335 Uniprot:P34471
Length = 410
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 147/412 (35%), Positives = 216/412 (52%)
Query: 18 PNYLKVYYGRLFPHADIFKWMSYG-NDGRHPACDKSYFGRREFSFTLDNDIYLRFQSFNS 76
P L +YY FP KW+ YG N+G YF RREF+F L +D+++R++S+N
Sbjct: 9 PQDLPIYYKNFFPVKPFTKWLRYGQNNG-------DYFNRREFAFILADDVHIRYRSYND 61
Query: 77 ESELENSIKEKCPSKIDIGPVYSVDPA--KRHAYAQGGDNVFAPVERELIFDIDITDYDD 134
E ++ P K+DIG VY+ +P KRH Q VEREL+FDID+TDYD
Sbjct: 62 EHAFFKALSSTNPEKLDIGAVYNHEPINNKRHTDYQA-------VERELVFDIDLTDYDP 114
Query: 135 VRYCCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRGVHCWVCDGKARRL 194
VR CC A VC +CW M +A+K++D L D F F +WV+SGRRGVHCWV D KAR L
Sbjct: 115 VRNCCKDATVCPKCWKFMVLAVKILDFQLEDMFDFKARMWVFSGRRGVHCWVGDKKARML 174
Query: 195 TNEQRGAIADYFRVYKGN---ENSNKKVSFPGPLHPFLVRSYTEVLREFFEEKLLLSQNL 251
N QR AIA ++K N E + + + P + ++ L++ EK++ Q
Sbjct: 175 NNYQRSAIATRLNLFKKNGQCEVTEGRAKMT-KVPPIVRDAFNVALKDGVFEKMIYDQGW 233
Query: 252 FSTEE---RYEKILSMIPDESVTS--ELRGKWQENRRSSNSKEDINFFRWEQLKNTLQSG 306
E+ Y K +S + + + S E QE D ++ + K+ L
Sbjct: 234 LDKEDFITEY-KFMSEVGRDDLRSLSETYKTPQERWNMIRGLFDDDYRKSLSPKDGLLDF 292
Query: 307 KQKVQGL-RRCVEEIVFAFTYPRLDMEVSKHRNHLLKAPFCVHPKTGRVCIPIDPKDCEE 365
K +QG R + V YPRLD+ VS NHLLK+PFC+HPKTG V +P++ EE
Sbjct: 293 K--MQGRDRNYLLYFVLQRCYPRLDVNVSTGTNHLLKSPFCIHPKTGNVAVPLNVGKIEE 350
Query: 366 FDPTTVPTLSELLRELNTGDSRMDVDNEWEKTSLGKSIRFFRSSFLQPLLKS 417
FD + P + ++ EL++ + N+ + S + ++ L P +++
Sbjct: 351 FDVSKCPRIDHVVEELSS--LLAERGNDENEDSKNRKFLAYKHGALAPYVEN 400
>UNIPROTKB|F1LNK6 [details] [associations]
symbol:Prim1 "DNA primase" species:10116 "Rattus
norvegicus" [GO:0003896 "DNA primase activity" evidence=IEA]
[GO:0030894 "replisome" evidence=IEA] InterPro:IPR002755
InterPro:IPR014052 Pfam:PF01896 RGD:621380 GO:GO:0003896
GO:GO:0030894 GeneTree:ENSGT00390000011466 PANTHER:PTHR10536
IPI:IPI00950150 Ensembl:ENSRNOT00000065593 ArrayExpress:F1LNK6
Uniprot:F1LNK6
Length = 297
Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
Identities = 118/292 (40%), Positives = 184/292 (63%)
Query: 142 ADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRGVHCWVCDGKARRLTNEQRGA 201
AD+C +CW LMT+A+++ID AL++DFGF H LWVYSGRRGVHCWVCD R+L++ R
Sbjct: 4 ADICSKCWTLMTMAMRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRSG 63
Query: 202 IADYFRVYKGNENSNKKVSFPGPLHPFLVRSYTEVLREFFEEKLLLSQNLFSTEERYEKI 261
I +Y + KG + KKV +HPF VR +++++FEE L+ Q++ +E ++KI
Sbjct: 64 IVEYLSLIKGGHDVKKKVHLNEKVHPF-VRKSINIIKKYFEEYALVDQDILENQENWDKI 122
Query: 262 LSMIPDESVTSELRGKWQENRRSSNSKEDINFFRWEQLKNTLQSGKQKVQGLRRC---VE 318
L+++P+ V EL+ +Q R +S + RWE L+ + S Q + +C +E
Sbjct: 123 LALVPETPVHDELQKGFQ---RFHSSPQ-----RWEYLRK-VASAPQNTKN-DKCGPWLE 172
Query: 319 -EIVFAFTYPRLDMEVSKHRNHLLKAPFCVHPKTGRVCIPIDPKDCEEFDPTTVPTLSEL 377
EI+ + +PRLD+ VSK NHLLK+PF VHPKTGR+ +PID + ++FDP VPT+S +
Sbjct: 173 WEIMLQYCFPRLDINVSKGVNHLLKSPFSVHPKTGRISVPIDFQKVDQFDPFVVPTISAI 232
Query: 378 LRELNTGDSRMDVDNEWEKTSLGKSIRFFRSSFLQPLLKSCKEEMESGYKAK 429
REL+ S + + E +T +R ++ + L P +K ++ +E+ K++
Sbjct: 233 CRELDVV-STTEKEKEENETDSRHRVRDYKRTSLAPYVKVFEQFLENLDKSR 283
>RGD|621380 [details] [associations]
symbol:Prim1 "DNA primase, p49 subunit" species:10116 "Rattus
norvegicus" [GO:0003896 "DNA primase activity" evidence=NAS]
[GO:0006260 "DNA replication" evidence=NAS] [GO:0030894 "replisome"
evidence=IEA] InterPro:IPR002755 InterPro:IPR014052 Pfam:PF01896
RGD:621380 GO:GO:0003896 GO:GO:0030894 HOGENOM:HOG000196041
KO:K02684 PANTHER:PTHR10536 CTD:5557 HOVERGEN:HBG003006
EMBL:BC088272 IPI:IPI00948532 RefSeq:NP_001008768.1
UniGene:Rn.92497 STRING:Q5M832 Ensembl:ENSRNOT00000064210
GeneID:246327 KEGG:rno:246327 UCSC:RGD:621380 InParanoid:Q5M832
NextBio:623762 Genevestigator:Q5M832 Uniprot:Q5M832
Length = 296
Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
Identities = 119/292 (40%), Positives = 185/292 (63%)
Query: 142 ADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRGVHCWVCDGKARRLTNEQRGA 201
AD+C +CW LMT+A+++ID AL++DFGF H LWVYSGRRGVHCWVCD R+L++ R
Sbjct: 4 ADICSKCWTLMTMAMRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRSG 63
Query: 202 IADYFRVYKGNENSNKKVSFPGPLHPFLVRSYTEVLREFFEEKLLLSQNLFSTEERYEKI 261
I +Y + KG + KKV +HPF VR +++++FEE L+ Q++ +E ++KI
Sbjct: 64 IVEYLSLIKGGHDVKKKVHLNEKVHPF-VRKSINIIKKYFEEYALVDQDILENQENWDKI 122
Query: 262 LSMIPDESVTSELRGKWQENRRSSNSKEDINFFRWEQLKNTLQSGKQKVQGLRRC---VE 318
L+++P E+V EL+ +Q R +S + RWE L+ + S Q + +C +E
Sbjct: 123 LALVP-ETVHDELQKGFQ---RFHSSPQ-----RWEYLRK-VASAPQNTKN-DKCGPWLE 171
Query: 319 -EIVFAFTYPRLDMEVSKHRNHLLKAPFCVHPKTGRVCIPIDPKDCEEFDPTTVPTLSEL 377
EI+ + +PRLD+ VSK NHLLK+PF VHPKTGR+ +PID + ++FDP VPT+S +
Sbjct: 172 WEIMLQYCFPRLDINVSKGVNHLLKSPFSVHPKTGRISVPIDFQKVDQFDPFVVPTISAI 231
Query: 378 LRELNTGDSRMDVDNEWEKTSLGKSIRFFRSSFLQPLLKSCKEEMESGYKAK 429
REL+ S + + E +T +R ++ + L P +K ++ +E+ K++
Sbjct: 232 CRELDVV-STTEKEKEENETDSRHRVRDYKRTSLAPYVKVFEQFLENLDKSR 282
>DICTYBASE|DDB_G0285853 [details] [associations]
symbol:polA4 "DNA primase small subunit"
species:44689 "Dictyostelium discoideum" [GO:0006269 "DNA
replication, synthesis of RNA primer" evidence=IEA;ISS] [GO:0003896
"DNA primase activity" evidence=IEA] [GO:0006273 "lagging strand
elongation" evidence=ISS] [GO:0006270 "DNA replication initiation"
evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0030894 "replisome" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] InterPro:IPR002755 InterPro:IPR014052 Pfam:PF01896
dictyBase:DDB_G0285853 GO:GO:0006270 EMBL:AAFI02000082
GO:GO:0003896 GO:GO:0003887 GO:GO:0006273 GO:GO:0006269
GO:GO:0005658 eggNOG:COG1467 KO:K02684 OMA:GRRGAHC
PANTHER:PTHR10536 TIGRFAMs:TIGR00335 RefSeq:XP_637963.1
STRING:Q54MM7 EnsemblProtists:DDB0232279 GeneID:8625316
KEGG:ddi:DDB_G0285853 InParanoid:Q54MM7 Uniprot:Q54MM7
Length = 409
Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
Identities = 127/381 (33%), Positives = 213/381 (55%)
Query: 21 LKVYYGRLFPHADIFKWMSYGNDGRHPACDKSYFGRREFSFTLD---NDIYLRFQSFNSE 77
L+ YY +LFP ++ W++ + K F RREFS ++ + +R +SFN
Sbjct: 22 LREYYDKLFPFDLLYDWLTINSINEKEEDKKRAFERREFSVRINKVSSSFVIRNKSFNRV 81
Query: 78 SELENSIKEK--------CPSKIDIGPVYSVDPAKRHAYAQGGDNVFAPVERELIFDIDI 129
+L+ +K + P ++DIGP+ S +P+K+ A D + PV +EL+FDID+
Sbjct: 82 EDLKEFLKGRQNIDGVYEVPERLDIGPICSWEPSKK---ATVSD--YQPVSKELVFDIDV 136
Query: 130 TDYDDVRYCCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRGVHCWVCDG 189
DY+ +R CCS +C +CW + V+ + ID LR+ FGF I++V+SGRRG+H WV D
Sbjct: 137 DDYNPIRVCCSSTSLCEKCWGFLAVSAEFIDNYLRECFGFQQIMYVFSGRRGLHIWVSDR 196
Query: 190 KARRLTNEQRGAIADYFRVYKGNENSNKKVSFPGPLHPFLVRSYTEVLREFFEEKLLLSQ 249
A+ LT E R +I ++ RV E S ++ P L RS+ ++L FE+ ++ Q
Sbjct: 197 AAQHLTRENRASILNHIRV----ELSQNQI-------PILKRSFDQILLPHFEKCIIEEQ 245
Query: 250 NLFSTEERYEKILSMIP------DESVT---SE-LRGKWQENRRSSNSKEDINFFRWEQL 299
+F+ E++ + LS++P D +T SE + K +E + + S +I W +
Sbjct: 246 QIFTNEKQRKNFLSLLPISYKRQDRKITLTPSEDIEKKLKEIQDENLSNSEI----WFAV 301
Query: 300 KNTLQSGKQKVQGLRRCVEEIVFAFTYPRLDMEVSKHRNHLLKAPFCVHPKTGRVCIPID 359
K+ L+ L+ + +VF +T PR+D V+ +HLLK+PFC+HP T ++C+P+D
Sbjct: 302 KSYLEDNN-----LKEHLYNLVFHYTMPRIDEPVTIGLDHLLKSPFCIHPDTKKLCVPLD 356
Query: 360 PKDCEEFDPTTVPTLSELLRE 380
+ +F+P VPT+ +L+ +
Sbjct: 357 INEIYKFNPNQVPTVDQLIND 377
>WB|WBGene00020761 [details] [associations]
symbol:T24C4.5 species:6239 "Caenorhabditis elegans"
[GO:0003896 "DNA primase activity" evidence=IEA] [GO:0006269 "DNA
replication, synthesis of RNA primer" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
InterPro:IPR002755 InterPro:IPR014052 Pfam:PF01896 GO:GO:0009792
GO:GO:0006898 GO:GO:0003896 GO:GO:0030894 eggNOG:COG1467
GeneTree:ENSGT00390000011466 HOGENOM:HOG000196041 KO:K02684
PANTHER:PTHR10536 EMBL:FO081214 PIR:T33670 RefSeq:NP_497283.2
ProteinModelPortal:Q9TZ34 STRING:Q9TZ34 PaxDb:Q9TZ34
EnsemblMetazoa:T24C4.5 GeneID:188846 KEGG:cel:CELE_T24C4.5
UCSC:T24C4.5 CTD:188846 WormBase:T24C4.5 InParanoid:Q9TZ34
NextBio:940300 Uniprot:Q9TZ34
Length = 318
Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
Identities = 107/296 (36%), Positives = 154/296 (52%)
Query: 18 PNYLKVYYGRLFPHADIFKWMSYG-NDGRHPACDKSYFGRREFSFTLDNDIYLRFQSFNS 76
P L +YY FP KW+ YG N G YF RREF+F L +D+++R++S+N
Sbjct: 9 PQDLPIYYKNFFPVKPFTKWLCYGQNYG-------DYFNRREFTFILADDVHIRYRSYND 61
Query: 77 ESELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNVFAPVERELIFDIDITDYDDVR 136
E ++ P K+DIG VY+ +P Y + VEREL+FDID+TDYD VR
Sbjct: 62 EHSFVKALSSTNPEKLDIGAVYNHEPINNKRYTD-----YQAVERELVFDIDLTDYDPVR 116
Query: 137 YCCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRGVHCWVCDGKARRLTN 196
CC A VC +CW M +A++++D L + F F +WV+SGRRGVHCWV D KAR L N
Sbjct: 117 NCCKDATVCPKCWKFMVLAVRILDFQLEEMFNFKARMWVFSGRRGVHCWVGDKKARMLNN 176
Query: 197 EQRGAIADYFRVYKGN---ENSNKKVSFPGPLHPFLVRSYTEVLREFFEEKLLLSQNLFS 253
QR AIA ++K N E + + + P + ++ L++ EK++ Q
Sbjct: 177 NQRSAIATRLNLFKKNGQCEVTEGRAKLTR-VPPTVRDAFNVALKDGVFEKMIYEQGWLD 235
Query: 254 TEERYEKILSMIPDESVTSELRGKWQENRRSSNSKEDINFFRWEQLKNTLQSGKQK 309
+ R+ I D SE G+ + RR S S + RW L+ + +K
Sbjct: 236 ND-RF------IIDYQYMSEF-GR-DDLRRISESFKTPQE-RWHMLRGLFDNDYRK 281
>UNIPROTKB|F8VSB2 [details] [associations]
symbol:PRIM1 "DNA primase small subunit" species:9606 "Homo
sapiens" [GO:0003896 "DNA primase activity" evidence=IEA]
InterPro:IPR002755 InterPro:IPR014052 Pfam:PF01896 GO:GO:0003896
EMBL:AC117378 PANTHER:PTHR10536 HGNC:HGNC:9369 ChiTaRS:PRIM1
IPI:IPI01022277 ProteinModelPortal:F8VSB2 Ensembl:ENST00000552590
ArrayExpress:F8VSB2 Bgee:F8VSB2 Uniprot:F8VSB2
Length = 185
Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
Identities = 76/147 (51%), Positives = 104/147 (70%)
Query: 18 PNYLKVYYGRLFPHADIFKWMSYGNDGRHPACDKSYFGRREFSFTLDNDIYLRFQSFNSE 77
P LK+YY RLFP++ ++W++YG K+YF REFSFTL +DIY+R+QSFN++
Sbjct: 10 PELLKLYYRRLFPYSQYYRWLNYGG------VIKNYFQHREFSFTLKDDIYIRYQSFNNQ 63
Query: 78 SELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNVFAPVERELIFDIDITDYDDVRY 137
S+LE +++ P KIDIG VYS P + + G F E+EL+FDID+TDYDDVR
Sbjct: 64 SDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGA---FQAQEKELVFDIDMTDYDDVRR 120
Query: 138 CCSGADVCLECWPLMTVAIKVIDTALR 164
CCS AD+C +CW LMT+AI++ID AL+
Sbjct: 121 CCSSADICPKCWTLMTMAIRIIDRALK 147
>UNIPROTKB|F1PDB3 [details] [associations]
symbol:PRIM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003896 "DNA primase activity" evidence=IEA]
InterPro:IPR002755 InterPro:IPR014052 Pfam:PF01896 GO:GO:0003896
GeneTree:ENSGT00390000011466 PANTHER:PTHR10536 EMBL:AAEX03006933
Ensembl:ENSCAFT00000000231 OMA:SADICSN Uniprot:F1PDB3
Length = 157
Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
Identities = 75/150 (50%), Positives = 104/150 (69%)
Query: 18 PNYLKVYYGRLFPHADIFKWMSYGNDGRHPACDKSYFGRREFSFTLDNDIYLRFQSFNSE 77
P LK+YY RLFP+A ++W++YG K+YF REFSFTL +DIY+R+QSF+++
Sbjct: 10 PELLKLYYRRLFPYAQYYRWLNYGG------VIKNYFQHREFSFTLKDDIYIRYQSFSNQ 63
Query: 78 SELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNVFAPVERELIFDIDITDYDDVRY 137
+LE +++ P KIDIG VYS P + + G F E+EL+FDID+TDYDDVR
Sbjct: 64 RDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGA---FQAQEKELVFDIDMTDYDDVRR 120
Query: 138 CCSGADVCLECWPLMTVAIKVIDTALRDDF 167
CCS AD+C +CW LMT+AI++ID AL+ +
Sbjct: 121 CCSSADICSKCWTLMTMAIRIIDRALKGKY 150
>UNIPROTKB|H0YIP2 [details] [associations]
symbol:PRIM1 "DNA primase small subunit" species:9606 "Homo
sapiens" [GO:0003896 "DNA primase activity" evidence=IEA]
InterPro:IPR002755 InterPro:IPR014052 Pfam:PF01896 GO:GO:0003896
EMBL:AC117378 PANTHER:PTHR10536 HGNC:HGNC:9369 ChiTaRS:PRIM1
Ensembl:ENST00000549549 Bgee:H0YIP2 Uniprot:H0YIP2
Length = 152
Score = 265 (98.3 bits), Expect = 1.4e-22, P = 1.4e-22
Identities = 58/155 (37%), Positives = 96/155 (61%)
Query: 231 RSYTEVLREFFEEKLLLSQNLFSTEERYEKILSMIPDESVTSELRGKWQENRRSSNSKED 290
R +++++FEE L++Q++ +E ++KIL+++P++S ++S NS +
Sbjct: 1 RKSINIIKKYFEEYALVNQDILENKESWDKILALVPEKSF-----------QKSHNSLQ- 48
Query: 291 INFFRWEQLKNTLQSGKQKVQGLRR--CVE-EIVFAFTYPRLDMEVSKHRNHLLKAPFCV 347
RWE LK + ++ + +E EI+ + +PRLD+ VSK NHLLK+PF V
Sbjct: 49 ----RWEHLKKVASRYQNNIKNDKYGPWLEWEIMLQYCFPRLDINVSKGINHLLKSPFSV 104
Query: 348 HPKTGRVCIPIDPKDCEEFDPTTVPTLSELLRELN 382
HPKTGR+ +PID + ++FDP TVPT+S + REL+
Sbjct: 105 HPKTGRISVPIDLQKVDQFDPFTVPTISFICRELD 139
>UNIPROTKB|F1SL96 [details] [associations]
symbol:F1SL96 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003896 "DNA primase activity" evidence=IEA]
InterPro:IPR002755 InterPro:IPR014052 Pfam:PF01896 GO:GO:0003896
GeneTree:ENSGT00390000011466 PANTHER:PTHR10536 EMBL:CU468457
Ensembl:ENSSSCT00000000442 OMA:ANQKESE Uniprot:F1SL96
Length = 169
Score = 229 (85.7 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 52/146 (35%), Positives = 82/146 (56%)
Query: 283 RSSNSKEDINFFRWEQLKNTLQSGKQKVQGLRRC---VE-EIVFAFTYPRLDMEVSKHRN 338
+ S K + RWE LK S Q +C +E EI+ + +PRLD+ VSK N
Sbjct: 6 QQSFQKHQNSLQRWEYLKKAA-SRYQNNSKNDKCGPWLEWEIMLQYCFPRLDINVSKGIN 64
Query: 339 HLLKAPFCVHPKTGRVCIPIDPKDCEEFDPTTVPTLSELLRELNTGDSRMDVDNEWEKTS 398
HLLK+PF VHPKTGR+ +PID + ++FDP TVPT+S + EL+ + + ++
Sbjct: 65 HLLKSPFSVHPKTGRISVPIDLQKVDQFDPFTVPTISSICHELDAISTNEEEKENGAESG 124
Query: 399 LGKSIRFFRSSFLQPLLKSCKEEMES 424
+ R ++ + L P +K ++ +E+
Sbjct: 125 IKHRTRDYKKTSLAPFVKVFEQFLEN 150
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.138 0.431 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 439 439 0.00089 118 3 11 22 0.39 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 622 (66 KB)
Total size of DFA: 309 KB (2158 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 37.61u 0.14s 37.75t Elapsed: 00:00:01
Total cpu time: 37.62u 0.14s 37.76t Elapsed: 00:00:01
Start: Sat May 11 07:57:17 2013 End: Sat May 11 07:57:18 2013