BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013616
(439 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1G71|A Chain A, Crystal Structure Of Pyrococcus Furiosus Dna Primase
pdb|1G71|B Chain B, Crystal Structure Of Pyrococcus Furiosus Dna Primase
Length = 347
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 122 ELIFDIDITDYDDVRYCCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRG 181
EL+FDID D R VC C K LR++ GF++I VYSG RG
Sbjct: 91 ELVFDIDAKDLPLKRCNHEPGTVCPICLEDAKELAKDTLIILREELGFENIHVVYSG-RG 149
Query: 182 VHCWVCDGKARRLTNEQRGAIADY 205
H + D A +L ++ R I +
Sbjct: 150 YHIRILDEWALQLDSKSRERILAF 173
>pdb|1V33|A Chain A, Crystal Structure Of Dna Primase From Pyrococcus
Horikoshii
pdb|1V34|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Dna Primase-utp
Complex
Length = 366
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 122 ELIFDIDITDYDDVRYCCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRG 181
EL+FDID D R VC C ++ LR++ GF+ I +YSG RG
Sbjct: 111 ELVFDIDAKDLPLRRCEHEPGTVCPICLNDAKEIVRDTVIILREELGFNDIHIIYSG-RG 169
Query: 182 VHCWVCDGKARRLTNEQRGAIADY 205
H V D A +L ++ R I +
Sbjct: 170 YHIRVLDEWALKLDSKSRERILSF 193
>pdb|1ZT2|A Chain A, Heterodimeric Structure Of The Core Primase.
pdb|1ZT2|C Chain C, Heterodimeric Structure Of The Core Primase
Length = 330
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 72/174 (41%), Gaps = 32/174 (18%)
Query: 57 REFSFT-LDNDIYLRFQSFNSESELENS-IKEKCPSKIDIGPVYSVDPAKRHAYAQGGDN 114
REF+ +D Y+R SF+S EL + + P + P+ R+ +
Sbjct: 36 REFALQPFGSDTYVRHLSFSSSEELRDYLVNRNLPLHLFYSSARYQLPSARNMEEK---- 91
Query: 115 VFAPVERELIFDID---ITDYDDVRYC--CSGADVCLECWPLMTVAIKVIDTA------- 162
A + +L+FDID + +R+C C A V +C ++ ++
Sbjct: 92 --AWMGSDLLFDIDADHLCKLRSIRFCPVCGNAVVSEKCERDNVETLEYVEMTSECIKRG 149
Query: 163 ----------LRDDFGFDHILWVYSGRRGVHCWV-CDGKARRLTNEQRGAIADY 205
L DDFG ++ +SG RG H V C G L +++R IA+Y
Sbjct: 150 LEQTRNLVEILEDDFGLKPKVY-FSGNRGFHVQVDCYGNCALLDSDERKEIAEY 202
>pdb|1ZBT|A Chain A, Crystal Structure Of Peptide Chain Release Factor 1 (rf-1)
(smu.1085) From Streptococcus Mutans At 2.34 A
Resolution
Length = 371
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 251 LFSTEERYEKILSMIPDESVTSELRGKWQENRRSSNSKEDINFFR-WEQLKNTLQSGKQK 309
L + E+RYE++ ++ D V S+ + + +R +NS+E + +R ++Q+ + ++
Sbjct: 19 LQAVEDRYEELGELLSDPDVVSDTKRFXELSREEANSRETVAVYREYKQVVQNIADAQEX 78
Query: 310 VQ 311
++
Sbjct: 79 IK 80
>pdb|3SCK|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From A Predicted Sars Coronavirus Civet Strain Complexed
With Human-Civet Chimeric Receptor Ace2
pdb|3SCK|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From A Predicted Sars Coronavirus Civet Strain Complexed
With Human-Civet Chimeric Receptor Ace2
pdb|3SCL|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From Sars Coronavirus Epidemic Strain Complexed With
Human-Civet Chimeric Receptor Ace2
pdb|3SCL|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From Sars Coronavirus Epidemic Strain Complexed With
Human-Civet Chimeric Receptor Ace2
Length = 603
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 329 LDMEVSKHRNHLLKAPFCVHPKTGRVCIPIDPKDCEEFDPTTVPTLSELLRELNTGDSRM 388
L + SK N +L ++ TG+VC P +P++C + P L+E++ + R+
Sbjct: 90 LSEDKSKRLNTILNTMSTIY-STGKVCNPDNPQECLLLE----PGLNEIMANSLDYNERL 144
Query: 389 DVDNEWEKTSLGKSIR 404
W ++ +GK +R
Sbjct: 145 WAWESW-RSEVGKQLR 159
>pdb|3D0G|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From The 2002-2003 Sars Coronavirus Human Strain
Complexed With Human-Civet Chimeric Receptor Ace2
pdb|3D0G|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From The 2002-2003 Sars Coronavirus Human Strain
Complexed With Human-Civet Chimeric Receptor Ace2
pdb|3D0H|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From The 2002-2003 Sars Coronavirus Civet Strain
Complexed With Human-Civet Chimeric Receptor Ace2
pdb|3D0H|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From The 2002-2003 Sars Coronavirus Civet Strain
Complexed With Human-Civet Chimeric Receptor Ace2
pdb|3D0I|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From The 2005-2006 Sars Coronavirus Civet Strain
Complexed With Human-Civet Chimeric Receptor Ace2
pdb|3D0I|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From The 2005-2006 Sars Coronavirus Civet Strain
Complexed With Human-Civet Chimeric Receptor Ace2
Length = 597
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 329 LDMEVSKHRNHLLKAPFCVHPKTGRVCIPIDPKDCEEFDPTTVPTLSELLRELNTGDSRM 388
L + SK N +L ++ TG+VC P +P++C + P L+E++ + R+
Sbjct: 90 LSEDKSKRLNTILNTMSTIY-STGKVCNPDNPQECLLLE----PGLNEIMANSLDYNERL 144
Query: 389 DVDNEWEKTSLGKSIR 404
W ++ +GK +R
Sbjct: 145 WAWESW-RSEVGKQLR 159
>pdb|1R42|A Chain A, Native Human Angiotensin Converting Enzyme-related
Carboxypeptidase (ace2)
pdb|1R4L|A Chain A, Inhibitor Bound Human Angiotensin Converting
Enzyme-Related Carboxypeptidase (Ace2)
Length = 615
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 334 SKHRNHLLKAPFCVHPKTGRVCIPIDPKDCEEFDPTTVPTLSELLRELNTGDSRMDVDNE 393
SK N +L ++ TG+VC P +P++C + P L+E++ + R+
Sbjct: 113 SKRLNTILNTMSTIY-STGKVCNPDNPQECLLLE----PGLNEIMANSLDYNERLWAWES 167
Query: 394 WEKTSLGKSIR 404
W ++ +GK +R
Sbjct: 168 W-RSEVGKQLR 177
>pdb|2AJF|A Chain A, Structure Of Sars Coronavirus Spike Receptor-Binding
Domain Complexed With Its Receptor
pdb|2AJF|B Chain B, Structure Of Sars Coronavirus Spike Receptor-Binding
Domain Complexed With Its Receptor
pdb|3KBH|A Chain A, Crystal Structure Of Nl63 Respiratory Coronavirus
Receptor-Binding Domain Complexed With Its Human
Receptor
pdb|3KBH|B Chain B, Crystal Structure Of Nl63 Respiratory Coronavirus
Receptor-Binding Domain Complexed With Its Human
Receptor
pdb|3KBH|C Chain C, Crystal Structure Of Nl63 Respiratory Coronavirus
Receptor-Binding Domain Complexed With Its Human
Receptor
pdb|3KBH|D Chain D, Crystal Structure Of Nl63 Respiratory Coronavirus
Receptor-Binding Domain Complexed With Its Human
Receptor
Length = 597
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 329 LDMEVSKHRNHLLKAPFCVHPKTGRVCIPIDPKDCEEFDPTTVPTLSELLRELNTGDSRM 388
L + SK N +L ++ TG+VC P +P++C + P L+E++ + R+
Sbjct: 90 LSEDKSKRLNTILNTMSTIY-STGKVCNPDNPQECLLLE----PGLNEIMANSLDYNERL 144
Query: 389 DVDNEWEKTSLGKSIR 404
W ++ +GK +R
Sbjct: 145 WAWESW-RSEVGKQLR 159
>pdb|3SCI|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From A Predicted Sars Coronavirus Human Strain Complexed
With Human Receptor Ace2
pdb|3SCI|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From A Predicted Sars Coronavirus Human Strain Complexed
With Human Receptor Ace2
pdb|3SCJ|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From A Predicted Sars Coronavirus Civet Strain Complexed
With Human Receptor Ace2
pdb|3SCJ|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From A Predicted Sars Coronavirus Civet Strain Complexed
With Human Receptor Ace2
Length = 603
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 329 LDMEVSKHRNHLLKAPFCVHPKTGRVCIPIDPKDCEEFDPTTVPTLSELLRELNTGDSRM 388
L + SK N +L ++ TG+VC P +P++C + P L+E++ + R+
Sbjct: 90 LSEDKSKRLNTILNTMSTIY-STGKVCNPDNPQECLLLE----PGLNEIMANSLDYNERL 144
Query: 389 DVDNEWEKTSLGKSIR 404
W ++ +GK +R
Sbjct: 145 WAWESW-RSEVGKQLR 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,185,192
Number of Sequences: 62578
Number of extensions: 625997
Number of successful extensions: 1255
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1250
Number of HSP's gapped (non-prelim): 15
length of query: 439
length of database: 14,973,337
effective HSP length: 102
effective length of query: 337
effective length of database: 8,590,381
effective search space: 2894958397
effective search space used: 2894958397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)