BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013616
(439 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P20664|PRI1_MOUSE DNA primase small subunit OS=Mus musculus GN=Prim1 PE=1 SV=1
Length = 417
Score = 352 bits (904), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 186/421 (44%), Positives = 263/421 (62%), Gaps = 39/421 (9%)
Query: 18 PNYLKVYYGRLFPHADIFKWMSYGNDGRHPACDKSYFGRREFSFTLDNDIYLRFQSFNSE 77
P LK+YY RLFP+A ++W++YG K+YF REFSFTL +DIY+R+QSFN++
Sbjct: 10 PELLKLYYRRLFPYAQYYRWLNYG------GVTKNYFQHREFSFTLKDDIYIRYQSFNNQ 63
Query: 78 SELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNVFAPVERELIFDIDITDYDDVRY 137
SELE +++ P KIDIG VYS P + + G F E+EL+FDID+TDYDDVR
Sbjct: 64 SELEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGA---FQAQEKELVFDIDMTDYDDVRR 120
Query: 138 CCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRGVHCWVCDGKARRLTNE 197
CCS AD+C +CW LMT+A+++ID AL++DFGF H LWVYSGRRGVHCWVCD R+L++
Sbjct: 121 CCSSADICSKCWTLMTMAMRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSA 180
Query: 198 QRGAIADYFRVYKGNENSNKKVSFPGPLHPFLVRSYTEVLREFFEEKLLLSQNLFSTEER 257
R I +Y + KG ++ KKV +HPF VR +++++FEE L+ Q++ +E
Sbjct: 181 VRSGIVEYLSLVKGGQDVKKKVHLNEKVHPF-VRKSINIIKKYFEEYALVGQDILENKEN 239
Query: 258 YEKILSMIPDESVTSELRGKWQENRRSSNSKEDINFFRWEQLKNTLQSGKQKVQGLRRCV 317
++KIL+++P E++ EL+ +Q+ S RWE L+ S + +C
Sbjct: 240 WDKILALVP-ETIHDELQRGFQKFHSSPQ--------RWEHLRKVANSSQNMKND--KCG 288
Query: 318 E----EIVFAFTYPRLDMEVSKHRNHLLKAPFCVHPKTGRVCIPIDPKDCEEFDPTTVPT 373
E++ + +PRLD+ VSK NHLLK+PF VHPKTGR+ +PID ++FDP TVPT
Sbjct: 289 PWLEWEVMLQYCFPRLDVNVSKGVNHLLKSPFSVHPKTGRISVPIDFHKVDQFDPFTVPT 348
Query: 374 LSELLREL------------NTGDSRMDVDNEWEKTSLGKSIRFFRSSFLQPLLKSCKEE 421
+S + REL N DS+ V ++KTSL ++ F FL+ L KS K E
Sbjct: 349 ISAICRELDMVSTHEKEKEENEADSKHRVRG-YKKTSLAPYVKVF-EQFLENLDKSRKGE 406
Query: 422 M 422
+
Sbjct: 407 L 407
>sp|P49642|PRI1_HUMAN DNA primase small subunit OS=Homo sapiens GN=PRIM1 PE=1 SV=1
Length = 420
Score = 351 bits (901), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 184/421 (43%), Positives = 269/421 (63%), Gaps = 36/421 (8%)
Query: 18 PNYLKVYYGRLFPHADIFKWMSYGNDGRHPACDKSYFGRREFSFTLDNDIYLRFQSFNSE 77
P LK+YY RLFP++ ++W++YG K+YF REFSFTL +DIY+R+QSFN++
Sbjct: 10 PELLKLYYRRLFPYSQYYRWLNYG------GVIKNYFQHREFSFTLKDDIYIRYQSFNNQ 63
Query: 78 SELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNVFAPVERELIFDIDITDYDDVRY 137
S+LE +++ P KIDIG VYS P + + G F E+EL+FDID+TDYDDVR
Sbjct: 64 SDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGA---FQAQEKELVFDIDMTDYDDVRR 120
Query: 138 CCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRGVHCWVCDGKARRLTNE 197
CCS AD+C +CW LMT+AI++ID AL++DFGF H LWVYSGRRGVHCWVCD R+L++
Sbjct: 121 CCSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSA 180
Query: 198 QRGAIADYFRVYKGNENSNKKVSFPGPLHPFLVRSYTEVLREFFEEKLLLSQNLFSTEER 257
R I +Y + KG ++ KKV +HPF +R +++++FEE L++Q++ +E
Sbjct: 181 VRSGIVEYLSLVKGGQDVKKKVHLSEKIHPF-IRKSINIIKKYFEEYALVNQDILENKES 239
Query: 258 YEKILSMIPDESVTSELRGKWQENRRSSNSKEDINFFRWEQLKNTLQSGKQKVQGLRR-- 315
++KIL+++P E++ EL+ +Q +S NS + RWE LK + ++ +
Sbjct: 240 WDKILALVP-ETIHDELQQSFQ---KSHNSLQ-----RWEHLKKVASRYQNNIKNDKYGP 290
Query: 316 -CVEEIVFAFTYPRLDMEVSKHRNHLLKAPFCVHPKTGRVCIPIDPKDCEEFDPTTVPTL 374
EI+ + +PRLD+ VSK NHLLK+PF VHPKTGR+ +PID + ++FDP TVPT+
Sbjct: 291 WLEWEIMLQYCFPRLDINVSKGINHLLKSPFSVHPKTGRISVPIDLQKVDQFDPFTVPTI 350
Query: 375 SELLRELNTGDSRM----------DVDN---EWEKTSLGKSIRFFRSSFLQPLLKSCKEE 421
S + REL+ + DV + +++KTSL ++ F FL+ L KS K E
Sbjct: 351 SFICRELDAISTNEEEKEENEAESDVKHRTRDYKKTSLAPYVKVF-EHFLENLDKSRKGE 409
Query: 422 M 422
+
Sbjct: 410 L 410
>sp|Q24317|PRI1_DROME DNA primase small subunit OS=Drosophila melanogaster
GN=DNApol-alpha50 PE=2 SV=2
Length = 438
Score = 327 bits (838), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 177/436 (40%), Positives = 250/436 (57%), Gaps = 36/436 (8%)
Query: 5 GPKQGNVIPDGFNPNYLK----VYYGRLFPHADIFKWMSYGNDGRHPACDKSYFGRREFS 60
P+Q +NP L+ VYY RLFPH ++W+SYG+ + + F RE S
Sbjct: 12 APQQQTTAVHAYNPEVLQDMLPVYYRRLFPHLPFYRWLSYGSS------EDAIFSNREIS 65
Query: 61 FTLDNDIYLRFQSFNSESELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNVFAPVE 120
FTL +DIY+R+ F++++ELE I + P KIDIGPV P K H GG PV+
Sbjct: 66 FTLQDDIYIRYLCFDTQAELEKEICSRNPIKIDIGPVMHSKP-KNHRSIPGG---LTPVQ 121
Query: 121 RELIFDIDITDYDDVRYCCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRR 180
REL+FDID+TDYD+VR CCSGA VCL+CW M +A +V+D ALR+DFGF+HI+W++SGRR
Sbjct: 122 RELVFDIDMTDYDEVRTCCSGAGVCLKCWKFMVLAARVLDVALREDFGFEHIIWIFSGRR 181
Query: 181 GVHCWVCDGKARRLTNEQRGAIADYFRV--YKGNENSNKKVSFPGPLHPFLVRSYTEVLR 238
G+HCWVCD +AR L R A+A+Y + Y N G ++ +++
Sbjct: 182 GIHCWVCDYQARHLDGRGRYAVAEYLNIITYASFAGGNSPRCSMGDRPHHSLKRALKIVE 241
Query: 239 EFFEEKLLLSQNLFSTEERYEKILSMIPDESVTSELRGKWQENRRSSNSKEDINFFRWEQ 298
FEE +L QNLF T + K+L+M+ D++ EL Q+N + WE
Sbjct: 242 PMFEEIVLEDQNLFGTPKGVTKLLNMVHDDAARGELESYMQKNLEDGAHSRLV----WES 297
Query: 299 L---KNTLQSGKQKV--QGLRRCVEEIVFAFTYPRLDMEVSKHRNHLLKAPFCVHPKTGR 353
N++++ + L+ V EI YPRLD+ V++ NHLLKAPFC+HP TG+
Sbjct: 298 FIKYANSMRTSTTSAWSRKLKNIVAEIQLGLLYPRLDINVTRGFNHLLKAPFCIHPATGK 357
Query: 354 VCIPIDPKDCEEFDPTTVPTLSELLRELNTGD----SRMDVD------NEWEKTSLGKSI 403
VC+P +FDPTTVPT+++LL E+N D S M+ + +KTS+ K +
Sbjct: 358 VCVPFSVSAVAKFDPTTVPTITQLLHEINAFDDKSKSYMEAPEDKSRIKDHKKTSMFKGV 417
Query: 404 RFFRSSFLQPLLKSCK 419
F FL+ L +S K
Sbjct: 418 VVF-EEFLRKLERSQK 432
>sp|O14215|PRI1_SCHPO DNA primase small subunit OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=pri1 PE=1 SV=1
Length = 454
Score = 301 bits (772), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 162/388 (41%), Positives = 238/388 (61%), Gaps = 32/388 (8%)
Query: 3 IDGPKQGNVIPDGFNPNYLKVYYGRLFPHADIFKWMSYGNDGRHPACDKSYFGRREFSFT 62
+DG KQG V + + YY LFP +F+W+++G P F REF+FT
Sbjct: 22 LDGAKQGAV-----DSETMIQYYRHLFPWKYLFQWLNHG-----PVVTND-FAHREFAFT 70
Query: 63 LDNDIYLRFQSFNSESELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNVFAPVERE 122
L ND Y+R+ SF++ EL+ CPS+ ++GPVYS +P R + + F P+++E
Sbjct: 71 LPNDAYIRYLSFSNWEELKKEALNLCPSRFEVGPVYSANPRDRKTIRK---STFHPLKKE 127
Query: 123 LIFDIDITDYDDVRYCCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRGV 182
L+FDID+TDYDDVR CCS ++C +CWP +T+A++V+D +DFGF HILWVYSGRRG+
Sbjct: 128 LVFDIDMTDYDDVRTCCSKTNICEKCWPFITIAVQVLDICFHEDFGFKHILWVYSGRRGI 187
Query: 183 HCWVCDGKARRLTNEQRGAIADYFRVYKGNENSNKKV--SFPGPLHPFLVRSYTEVLREF 240
H W+CD A L + R IA Y +V GN ++ + PLHP L RS +L+
Sbjct: 188 HAWICDEIACSLDDRSRRMIASYLQVVVGNPQGGVRLINNLKRPLHPHLTRSLN-ILKSA 246
Query: 241 FEEKLLLSQNLFSTEERYEKILSMIPDESVTSELRGKWQ-ENRRSSNSKEDINFFRWEQL 299
F + +L Q+ ++++E E +L ++PD+ + S LR KW+ + RSS +K W +
Sbjct: 247 FVKIVLEDQDPWASKEGAENLLKLLPDKDLASALRKKWEVDPERSSKNK-------WSDI 299
Query: 300 KNTLQSGKQKVQGLRRCV-----EEIVFAFTYPRLDMEVSKHRNHLLKAPFCVHPKTGRV 354
L SG + + V ++IV + YPRLD+EVS+H NHLLK+PFCVHP T RV
Sbjct: 300 DTVLASG--SIASISPSVIAIAKQDIVLTYLYPRLDVEVSRHLNHLLKSPFCVHPGTSRV 357
Query: 355 CIPIDPKDCEEFDPTTVPTLSELLRELN 382
C+PID + + F+P VPT+++LL+EL+
Sbjct: 358 CVPIDIERMDSFNPLKVPTVNDLLQELD 385
>sp|Q25998|PRI1_PLAFK DNA primase small subunit OS=Plasmodium falciparum (isolate K1 /
Thailand) PE=3 SV=1
Length = 452
Score = 290 bits (743), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 177/442 (40%), Positives = 258/442 (58%), Gaps = 41/442 (9%)
Query: 9 GNVIPDGFNPNYLKVYYGRLFPHADIFKWMSYGND--GRHPAC-DKSYFGRREFSFTLDN 65
G++ N N L YY L P D++ W++Y ND G++ D +F +REFSFT
Sbjct: 7 GDIKDSIVNENDLIFYYRSLCPINDLYNWLNYKNDIKGKYTKLNDPHFFSKREFSFTCKK 66
Query: 66 ------DIYLRFQSFNSESELENSI-KEKCPSKIDIGPVYSVDPAKRHAYAQGGDNVFAP 118
+IY+R+ SF++ E +N + + P K DIG +Y+ +++ Q GD +F P
Sbjct: 67 SDQGKEEIYIRWLSFSNPEEFKNKLLSDLVPIKFDIGAIYNFPVSQKD---QKGD-IFLP 122
Query: 119 VERELIFDIDITDYDDVRYCCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSG 178
V++ELIFDID+ DYDD+R CC+ VC CW +TVAI ++DTALR+DF F+HILWVYSG
Sbjct: 123 VQKELIFDIDMNDYDDIRTCCTDKKVCKLCWKFLTVAIVLLDTALREDFSFEHILWVYSG 182
Query: 179 RRGVHCWVCDGKARRLTNEQRGAIADYFRVYKGNENSNKKVSFPGP-LHPFLVRSYTEVL 237
RRG+HCWV D R T + R A+ADY + G++ KKVS G +P R++
Sbjct: 183 RRGIHCWVADESCRYYTTDARAALADYLNILSGSDTKKKKVSIWGKDKYPMFERAFDICY 242
Query: 238 REFFEEKLLLSQNLFST-EERYEKILSMIPDES--VTSELRG------KWQENRRSSNSK 288
+ F + L+ Q+ F +K++ +P S VT L+ K N + NS+
Sbjct: 243 KYF--DVLMEEQDFFKKGSPHVQKLIDYLPYASGKVTDPLKAMKLNELKEYINNNNFNSR 300
Query: 289 EDINFFRWEQLKNTLQSG----KQKVQG---LRRCVEEIVFAFTYPRLDMEVSKHRNHLL 341
E F ++ + N L ++ V G + V+EIVF FTYPRLD+ VSK NHLL
Sbjct: 301 EI--FEKFSSIYNFLTPSNYFKRKNVSGNINMPSFVKEIVFHFTYPRLDINVSKEINHLL 358
Query: 342 KAPFCVHPKTGRVCIPIDPKDCEEFDPTTVPTLSELLREL--NTGDSRMDVDNEWEKTSL 399
K+PFC+H TGRVC+P+D K+ F+P +VPTL +LLRE + +S ++ +N +TSL
Sbjct: 359 KSPFCIHNSTGRVCVPLDIKNINNFNPQSVPTL-KLLREQFDDPKNSHIEAEN---RTSL 414
Query: 400 GKSIRFFRSSFLQPLLKSCKEE 421
I +FR F++ +L SC E+
Sbjct: 415 KPYIDYFRRHFIENILLSCVEK 436
>sp|Q7KQM1|PRI1_PLAF7 DNA primase small subunit OS=Plasmodium falciparum (isolate 3D7)
GN=PF14_0366 PE=3 SV=1
Length = 452
Score = 290 bits (743), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 177/442 (40%), Positives = 258/442 (58%), Gaps = 41/442 (9%)
Query: 9 GNVIPDGFNPNYLKVYYGRLFPHADIFKWMSYGND--GRHPAC-DKSYFGRREFSFTLDN 65
G++ N N L YY L P D++ W++Y ND G++ D +F +REFSFT
Sbjct: 7 GDIKDSIVNENDLIFYYRSLCPINDLYNWLNYKNDIKGKYTKLNDPHFFSKREFSFTCKK 66
Query: 66 ------DIYLRFQSFNSESELENSI-KEKCPSKIDIGPVYSVDPAKRHAYAQGGDNVFAP 118
+IY+R+ SF++ E +N + + P K DIG +Y+ +++ Q GD +F P
Sbjct: 67 SDQGKEEIYIRWLSFSNPEEFKNKLLSDLVPIKFDIGAIYNFPVSQKD---QKGD-IFLP 122
Query: 119 VERELIFDIDITDYDDVRYCCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSG 178
V++ELIFDID+ DYDD+R CC+ VC CW +TVAI ++DTALR+DF F+HILWVYSG
Sbjct: 123 VQKELIFDIDMNDYDDIRTCCTDKKVCKLCWKFLTVAIVLLDTALREDFSFEHILWVYSG 182
Query: 179 RRGVHCWVCDGKARRLTNEQRGAIADYFRVYKGNENSNKKVSFPGP-LHPFLVRSYTEVL 237
RRG+HCWV D R T + R A+ADY + G++ KKVS G +P R++
Sbjct: 183 RRGIHCWVADESCRYYTTDARAALADYLNILSGSDTKKKKVSIWGKDKYPMFERAFDICY 242
Query: 238 REFFEEKLLLSQNLFST-EERYEKILSMIPDES--VTSELRG------KWQENRRSSNSK 288
+ F + L+ Q+ F +K++ +P S VT L+ K N + NS+
Sbjct: 243 KYF--DVLMEEQDFFKKGSPHVQKLIDYLPYASGKVTDPLKAMKLNELKEYINNNNFNSR 300
Query: 289 EDINFFRWEQLKNTLQSG----KQKVQG---LRRCVEEIVFAFTYPRLDMEVSKHRNHLL 341
E F ++ + N L ++ V G + V+EIVF FTYPRLD+ VSK NHLL
Sbjct: 301 EI--FEKFSSIYNFLTPSNYFKRKNVSGNINMPSFVKEIVFHFTYPRLDINVSKEINHLL 358
Query: 342 KAPFCVHPKTGRVCIPIDPKDCEEFDPTTVPTLSELLREL--NTGDSRMDVDNEWEKTSL 399
K+PFC+H TGRVC+P+D K+ F+P +VPTL +LLRE + +S ++ +N +TSL
Sbjct: 359 KSPFCIHNSTGRVCVPLDIKNINNFNPQSVPTL-KLLREQFDDPKNSHIEAEN---RTSL 414
Query: 400 GKSIRFFRSSFLQPLLKSCKEE 421
I +FR F++ +L SC E+
Sbjct: 415 KPYIDYFRRHFIENILLSCVEK 436
>sp|P10363|PRI1_YEAST DNA primase small subunit OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PRI1 PE=1 SV=2
Length = 409
Score = 265 bits (676), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 157/422 (37%), Positives = 236/422 (55%), Gaps = 32/422 (7%)
Query: 9 GNVIPDGFNPNYLKVYYGRLFPHADIFKWMSYGNDGRHPACDKSYFGRREFSFTLDNDIY 68
+V +G + + ++ YY L+P IF W+ N P+ D REF+ + Y
Sbjct: 3 NSVKTNGPSSSDMEYYYKSLYPFKHIFNWL---NHSPKPSRD---MINREFAMAFRSGAY 56
Query: 69 LRFQSFNSESELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNVFAPVERELIFDID 128
R+ SFNS + + I++ P + +IG +Y+ P +R + +E+EL+FDID
Sbjct: 57 KRYNSFNSVQDFKAQIEKANPDRFEIGAIYNKPPRERDTLLKSE---LKALEKELVFDID 113
Query: 129 ITDYDDVRYCCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRGVHCWVCD 188
+ DYD R CCSGA VC +CW +++A+K+ +TALR+DFG+ +WV+SGRRG HCWV D
Sbjct: 114 MDDYDAFRTCCSGAQVCSKCWKFISLAMKITNTALREDFGYKDFIWVFSGRRGAHCWVSD 173
Query: 189 GKARRLTNEQRGAIADYFRVYKGNENSNKKVSFPGPLHPFLVRSYTEVLREFFEEKLLLS 248
+AR LT+ QR + DY V + + N++K+++ P HP L RS E L+ FF +L
Sbjct: 174 KRARALTDVQRRNVLDYVNVIR-DRNTDKRLALKRPYHPHLARSL-EQLKPFFVSIMLEE 231
Query: 249 QNLFSTEER-YEKILSMIPDESVTSELRGKWQENRRSSNSKEDINFFRWEQLKNTLQSGK 307
QN + ++ + +L + D+ + L+ W +N R S SKE N +Q+ +L G
Sbjct: 232 QNPWEDDQHAIQTLLPALYDKQLIDSLKKYWLDNPRRS-SKEKWNDI--DQIATSLFKGP 288
Query: 308 QK---VQGLRRCVEEIVFAFTYPRLDMEVSKHRNHLLKAPFCVHPKTGRVCIPIDPKDCE 364
++ + LR C E++V YP+LD+EV+K HLLKAPFC+HP TG VC+PID E
Sbjct: 289 KQDSHIIKLRECKEDLVLMTLYPKLDVEVTKQTIHLLKAPFCIHPATGNVCVPID----E 344
Query: 365 EFDPTTVPTLSELLRELNTGDSRMDVDNEWEKTSLGKSIRFFR---SSFLQPLLKSCKEE 421
F P P L +L E M+ +N+ T+L I F+ SS L+ L S K E
Sbjct: 345 SFAPEKAPKLIDLQTE-------MEKNNDVSLTALQPFINQFQAYVSSLLKNELGSVKRE 397
Query: 422 ME 423
E
Sbjct: 398 RE 399
>sp|P34471|PRI1_CAEEL DNA primase small subunit OS=Caenorhabditis elegans GN=pri-1 PE=3
SV=1
Length = 410
Score = 236 bits (601), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 143/392 (36%), Positives = 204/392 (52%), Gaps = 58/392 (14%)
Query: 18 PNYLKVYYGRLFPHADIFKWMSYGNDGRHPACDKSYFGRREFSFTLDNDIYLRFQSFNSE 77
P L +YY FP KW+ YG + + YF RREF+F L +D+++R++S+N E
Sbjct: 9 PQDLPIYYKNFFPVKPFTKWLRYGQN------NGDYFNRREFAFILADDVHIRYRSYNDE 62
Query: 78 SELENSIKEKCPSKIDIGPVYSVDPA--KRHAYAQGGDNVFAPVERELIFDIDITDYDDV 135
++ P K+DIG VY+ +P KRH Q VEREL+FDID+TDYD V
Sbjct: 63 HAFFKALSSTNPEKLDIGAVYNHEPINNKRHTDYQA-------VERELVFDIDLTDYDPV 115
Query: 136 RYCCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRGVHCWVCDGKARRLT 195
R CC A VC +CW M +A+K++D L D F F +WV+SGRRGVHCWV D KAR L
Sbjct: 116 RNCCKDATVCPKCWKFMVLAVKILDFQLEDMFDFKARMWVFSGRRGVHCWVGDKKARMLN 175
Query: 196 NEQRGAIADYFRVYKGN------ENSNKKVSFPGPLHPFLVRSYTEVLREFFEEKLLLSQ 249
N QR AIA ++K N E K P P + ++ L++ EK++ Q
Sbjct: 176 NYQRSAIATRLNLFKKNGQCEVTEGRAKMTKVP----PIVRDAFNVALKDGVFEKMIYDQ 231
Query: 250 NLFSTEERYE--KILSMIPDESVTS-------------ELRGKWQENRRSSNSKED--IN 292
E+ K +S + + + S +RG + ++ R S S +D ++
Sbjct: 232 GWLDKEDFITEYKFMSEVGRDDLRSLSETYKTPQERWNMIRGLFDDDYRKSLSPKDGLLD 291
Query: 293 FFRWEQLKNTLQSGKQKVQGL-RRCVEEIVFAFTYPRLDMEVSKHRNHLLKAPFCVHPKT 351
F K+QG R + V YPRLD+ VS NHLLK+PFC+HPKT
Sbjct: 292 F---------------KMQGRDRNYLLYFVLQRCYPRLDVNVSTGTNHLLKSPFCIHPKT 336
Query: 352 GRVCIPIDPKDCEEFDPTTVPTLSELLRELNT 383
G V +P++ EEFD + P + ++ EL++
Sbjct: 337 GNVAVPLNVGKIEEFDVSKCPRIDHVVEELSS 368
>sp|B9LPT9|PRIS_HALLT Probable DNA primase small subunit OS=Halorubrum lacusprofundi
(strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34)
GN=priA PE=3 SV=1
Length = 387
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 119/310 (38%), Gaps = 64/310 (20%)
Query: 90 SKIDIGPV--YSVDPAKRHAYAQGG--DNVFAPV-------ERELIFDIDITDYDDVRY- 137
S D+G V + D A RHAY D+ A +L+FD+D V
Sbjct: 51 SLYDLGDVDTFFADNAPRHAYFSAARYDDPGASTMSQKGWRSADLVFDLDADHLPGVDPD 110
Query: 138 CCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRGVHCWVCDGKARRLTNE 197
S ++ EC + ++++D L DDF FD + V+SG RG H V D R L +E
Sbjct: 111 ATSYPEMLAECKQAL---LRLLDF-LEDDFSFDDLTVVFSGGRGYHVHVRDESVRELDSE 166
Query: 198 QRGAIADYFRVYK----------GNENSNKKV-----SFPGPLHPFLVRSYTEVLREF-- 240
R + DY R + K+V + +H L+ Y + LRE
Sbjct: 167 ARREVVDYVRAIDLDTEGLIRTVSERGTTKRVLRTEGGWGARVHEALI-EYADDLREMDA 225
Query: 241 --FEEKLLLSQNLFSTEERYEKILSMIPDESVTSELRGKWQENRRSSNSKEDINFFRWEQ 298
E+L+ + E R E IL +R + +E
Sbjct: 226 EDARERLMELDGI--GEGRAETILGAF---------------DRNPTAVRE--------- 259
Query: 299 LKNTLQSGKQKVQGLRRCVEEIVFAFTYPRLDMEVSKHRNHLLKAPFCVHPKTGRVCIPI 358
+++G V+ L + V A +D V+ L++ P +H +G V PI
Sbjct: 260 --GNVEAGGPGVRRLVSALAARVTATDTAPIDEPVTTDTRRLIRLPRTLHGGSGLVVTPI 317
Query: 359 DPKDCEEFDP 368
D D + FDP
Sbjct: 318 DRDDLDAFDP 327
>sp|Q6L0W5|PRIS_PICTO Probable DNA primase small subunit OS=Picrophilus torridus (strain
ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)
GN=priA PE=3 SV=1
Length = 370
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 73/326 (22%), Positives = 128/326 (39%), Gaps = 40/326 (12%)
Query: 55 GRREFSFTLDNDIYLRFQSFNSESELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDN 114
+RE + + +R SF + E+E+ +K P + Y + P ++ + +
Sbjct: 27 SKREIGYIPFSGTMIRHLSFRNHREIESFVKRNTPRHLYYSSAYYIKPDEKRMEKKIWEG 86
Query: 115 VFAPVERELIFDIDITDYDDVRYCCSGADVCLECWPLMTVAIKV--IDTALRDDFGFD-- 170
ELIFD+D G+D L+ V V + L +DFGFD
Sbjct: 87 A------ELIFDLDAD-------HIPGSDKMTYEEILLEVKKHVSRLLNYLINDFGFDDD 133
Query: 171 HILWVYSGRRGVHCWVCDGKARRLTNEQRGAIADYFRVYKGNENSNKKVSFPGPLHPFLV 230
I +SG RG H V + L ++ R I +Y ++ ++ + S P L
Sbjct: 134 SIKLYFSGGRGYHVHVVSDRVYSLDSDARREIGNYIKMEDFTIDNIIRASREKPESGPLK 193
Query: 231 RSYTEVLREFFEEKLLLSQNLFSTEERYEKILSMIPDESVTSELRGKWQENRRSSNSKED 290
R + E + E + ++ L + +RY K L + D ++ + + SK D
Sbjct: 194 R-FNEYISEIYSDENYLKRFYNGDFDRYYKSLDVYKDGKKKIDIMRENNYEKFKIVSKRD 252
Query: 291 INFFRWEQLKNTLQSGKQKVQGLRRCVEEIVFAFTYPRLDMEVSKHRNHLLKAPFCVHPK 350
++ L N L K K +D V+ + L++ P +H K
Sbjct: 253 LDV-----LNNILNDFKDKYSA---------------EIDEPVTTDVHRLIRFPGSLHGK 292
Query: 351 TGRVCIPIDPKDCEEFDP--TTVPTL 374
TG P++ + + FDP + VP +
Sbjct: 293 TGLAVTPVNINEFDNFDPLISAVPEV 318
>sp|Q18GR9|PRIS_HALWD Probable DNA primase small subunit OS=Haloquadratum walsbyi (strain
DSM 16790) GN=priA PE=3 SV=1
Length = 385
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 101/253 (39%), Gaps = 25/253 (9%)
Query: 122 ELIFDIDITDYDDVR-YCCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRR 180
+LIFD+D V S AD+ C + ++ ID DDF FD V+SG R
Sbjct: 93 DLIFDLDADHLPGVNPDTTSYADMLTACKTELQTLLEFID----DDFNFDETQVVFSGGR 148
Query: 181 GVHCWVCDGKARRLTNEQRGAIADYFRVYKGN-ENSNKKVSFPGPLHPFLVR--SYTEVL 237
G H V D + R L + R I DY R N E + S G L + + +
Sbjct: 149 GYHVHVRDEQVRSLDSAARREIVDYIRAIDLNIETLIETQSNHGTTQRILKHRGGWGQRI 208
Query: 238 REFFEEKLLLSQNLFSTE--ERYEKILSMIPDESVTSELRGKWQENRRSSNSKEDINFFR 295
+ E + Q TE ER + + + T + G+ Q N + ++
Sbjct: 209 HKRLVELIETLQASDDTEALERLQSFEGIGTGRAET--ILGQIQNNPEAIHA-------- 258
Query: 296 WEQLKNTLQSGKQKVQGLRRCVEEIVFAFTYPRLDMEVSKHRNHLLKAPFCVHPKTGRVC 355
L++G ++ L + + F +D V+ N L++ P +H +G +
Sbjct: 259 -----GNLEAGGAGIRILADALAQTAFEAETAPIDEPVTTDTNRLIRLPGSLHGGSGLLV 313
Query: 356 IPIDPKDCEEFDP 368
P+D ++ F P
Sbjct: 314 TPLDREEIPSFHP 326
>sp|Q5V554|PRIS_HALMA Probable DNA primase small subunit OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=priA PE=3 SV=1
Length = 392
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 97/260 (37%), Gaps = 23/260 (8%)
Query: 122 ELIFDIDITDYDDVRYCCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRG 181
+L+FD+D D + G D E A++ + L DDFGFD + V+SG RG
Sbjct: 94 DLVFDLDA---DHLPSVVLGEDSYAEMLAKCKDALRRLLDFLEDDFGFDDLTIVFSGGRG 150
Query: 182 VHCWVCDGKARRLTNEQRGAIADYFRVYK-------GNENSNKKVSFPGPLHPFLVRSYT 234
H V D + R L + R + DY R E+ P + +
Sbjct: 151 YHVHVRDERIRHLERDARREVVDYVRGIGLEFDELVDEESVAGTAGRSSPAQKRTLSTEG 210
Query: 235 EVLREFFEEKLLLSQNLFSTEERYEKILSMIPDESVTSELRGKWQENRRSSNSKEDINFF 294
L + +L + EE L + + E + N SN
Sbjct: 211 GWSARAHRHMLAVVDDLLAMEE--ADALEQLQEYDGIGEGKATAALNAARSN-------- 260
Query: 295 RWEQLK-NTLQSGKQKVQGLRRCVEEIVFAFTYPRLDMEVSKHRNHLLKAPFCVHPKTGR 353
+EQL+ + Q + + E+V A P +D V+ N L++ P +H +G
Sbjct: 261 -YEQLEAGNIDVHPAFYQLAKILLHEVVAADNAP-IDEPVTTDTNRLIRLPGSLHGGSGL 318
Query: 354 VCIPIDPKDCEEFDPTTVPT 373
ID D + FDP P
Sbjct: 319 EVQRIDRDDLDAFDPLVDPV 338
>sp|O29516|PRIS_ARCFU Probable DNA primase small subunit OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=priA PE=3 SV=2
Length = 335
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 78/319 (24%), Positives = 120/319 (37%), Gaps = 69/319 (21%)
Query: 54 FGRREFSFT----LDNDIYLRFQSFNSESELENSIKEKCPSKIDIGPVYSVDPAKRHAYA 109
F REF+F L + + R SF SE++ I P+ I Y PA+
Sbjct: 26 FKNREFAFVPLELLPDFVMHRHISFRSETDFRAYILSNVPAHIYFSSAYYERPAEDKMEN 85
Query: 110 QGGDNVFAPVERELIFDIDITDYDDVRYCCSGADVCLECWPLMTVAIKVIDTALRDDFGF 169
+G + +LIFDID D + + LE + IK + LR DFG
Sbjct: 86 KGW------LGADLIFDIDA---DHLPVKAQSFEKALE---MAKREIKKLTAVLRADFGI 133
Query: 170 DHILWVYSGRRGVHCWVCDGKARRLTNEQRGAIADYFRVYKGNENSNKKVSFPGPLHPFL 229
+ +SG RG H V D + L + +R I DY R+ NS K V +
Sbjct: 134 RDMKIYFSGGRGYHVHVHDEEFLSLGSAERREIVDYLRL-----NSPKIVVEDRFANSNA 188
Query: 230 VRSYTEVLREFFEEKLLLSQNLFSTEERYEKILSMIPDESVTSELRGKWQENRRSSNSKE 289
+ LR+ EE DE +TS+L+ K + ++ +K+
Sbjct: 189 AKRVLNYLRKKLEE-----------------------DERLTSKLKIKPADLKKEKLTKK 225
Query: 290 DINFFRWEQLKNTLQSGKQKVQGLRRCVEEIVFAFTYPRLDMEVSKHRNHLLKAPFCVHP 349
I R VE+ ++ +D V+ L++ P +H
Sbjct: 226 VI-----------------------RAVEKFDYSALSIYIDAPVTADVKRLIRLPGSLHG 262
Query: 350 KTGRVCIPIDPKDCEEFDP 368
KTG ++ D E F+P
Sbjct: 263 KTGLRVTEVE--DIESFNP 279
>sp|Q2NI23|PRIS_METST Probable DNA primase small subunit OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=priA PE=3 SV=1
Length = 324
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 127/314 (40%), Gaps = 66/314 (21%)
Query: 57 REFSFT-LDNDIYLRFQSFNSESELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNV 115
REF F N R++ F + L+ IK K P + P +R + +
Sbjct: 37 REFGFDHYGNGPNDRYKVFVDDLRLKRFIKVKQPFAAYCSVAFYDKPNQRKGWQKS---- 92
Query: 116 FAPVERELIFDIDITDYDDVRYC-CSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILW 174
EL+FD+D D +R C C+ +VC +C + +I L DFG +I
Sbjct: 93 ------ELVFDVDAKDI-PIRTCDCAEGEVCEKCLNQAKEIVLMIRDVLSGDFGLTNINL 145
Query: 175 VYSGRRGVHCWVCDGKARRLTNEQRGAIADYFRVYKGNENSNKKVSFPGPLHPFLV---- 230
+YSG RG H V D ++E RG I Y K + SN + F L PF++
Sbjct: 146 IYSG-RGYHVRVLDEDVMDASSELRGDIIQYVTGSKLPDLSN-EYGF-NDLQPFIIPFGY 202
Query: 231 -RSYT---------------------EVLREFFEEKLLLSQNLFSTEE------RYEKIL 262
+++T ++LR+ + + LL ++L+ RY+K++
Sbjct: 203 PKNFTRWSKYTILHLRRSSKLDDVNNQLLRDVLKHRNLLQEDLWGMFRSNIGPIRYKKVM 262
Query: 263 SMIPDESVTSELRGKWQENRRSSNSKEDINFFRWEQLKNTLQSGKQKVQGLRRCVE---- 318
+ I + N + +++K I+ R +L +TL S L + +E
Sbjct: 263 NAIS------------RINMQITDTKVSIDLKRILRLPSTLHSKVSMKSTLIKNIETFDP 310
Query: 319 --EIVFAFTYPRLD 330
+ V F Y R D
Sbjct: 311 FDDAVPKFVYERND 324
>sp|A5UJA2|PRIS_METS3 Probable DNA primase small subunit OS=Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861) GN=priA PE=3 SV=1
Length = 324
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 141/337 (41%), Gaps = 65/337 (19%)
Query: 56 RREFSFTLD----NDIYLRFQSFNSESELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQG 111
+REF F + ND R++ F L+ ++ K P I + +P +R + +
Sbjct: 33 KREFGFDHNGKGPND---RYKVFRGSESLKKFLRYKAPFAAYISVAFYNNPRRREDWQKA 89
Query: 112 GDNVFAPVERELIFDIDITDYDDVRYC-CSGA-DVCLECWPLMTVAIKVIDTALRDDFGF 169
E IFD+D D +R C C G +VCL + + +IDT L+DD G
Sbjct: 90 ----------EYIFDVDAKDIP-IRSCQCDGVCEVCL--GQALEIVNSLIDT-LQDDLGL 135
Query: 170 DHILWVYSGRRGVHCWVCDGKARRLTNEQRGAIADYF---RVYKGN----ENSNKKVSFP 222
++I VYSG RG H + D + +E R + Y V K N + SNK +F
Sbjct: 136 NNIHLVYSG-RGYHIRILDEEMMTSGSELRSEVLKYVAGAEVPKSNFFNPDISNKSFNFE 194
Query: 223 GPLHPFLVRSYTEVLREFFEEKLLLS-QNLFSTEERYEKILSMIPDESVTSELRGKWQEN 281
H + Y+++ F +KL + Q+L EE E ++ D K++ +
Sbjct: 195 ---HFSIPVGYSKI----FTDKLKYNIQHLVGNEELDEINPKLMKDII-------KYRHH 240
Query: 282 RRSSNSKEDINFFRWEQLKNTLQSGKQKVQGLRRCVEEIVFAFTYPRLDMEVSKHRNHLL 341
+ N W K + G ++ + L + + + +D +VS +L
Sbjct: 241 LDNDN---------WGYFKRDI--GPRRYKNLTEAMARVNLS----TIDAKVSIDLKRIL 285
Query: 342 KAPFCVHPKTGRVCIPIDPKDCEEFDPT--TVPTLSE 376
+ P +H K C+ + K+ E FDP VP E
Sbjct: 286 RLPSSLHSKVSMKCMEV--KNRETFDPLQEAVPKFVE 320
>sp|C6A5C2|PRIS_THESM Probable DNA primase small subunit OS=Thermococcus sibiricus
(strain MM 739 / DSM 12597) GN=priA PE=3 SV=1
Length = 342
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 99/260 (38%), Gaps = 31/260 (11%)
Query: 122 ELIFDIDITDYDDVRYCCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRG 181
EL+FDID D R VC C K LR+DFGF++I +YSG RG
Sbjct: 93 ELVFDIDAKDLPLKRCNHETGKVCPICLDDAKELTKDTLLILREDFGFENIHLIYSG-RG 151
Query: 182 VHCWVCDGKARRLTNEQRGAIADYFRVYKGNENSNKKVSFPGPLHPFLVRSYTEVLREFF 241
H V D A L ++ R I Y +S ++++F +
Sbjct: 152 YHIRVLDDWALGLDSKAREKILSYI-------SSAEEITF----------------EDLQ 188
Query: 242 EEKLLLSQNLFST-EERYEKILSMIPDESVTSELRGKWQENRRSSNSKEDINFFRWEQLK 300
E K+LLS + R+ + + + + + K Q + E F + +
Sbjct: 189 ERKILLSSGYYRVFRLRFGYFIKRVSEYHLRNIGLNKRQIEQIIDGRDEIYENFVKKAMI 248
Query: 301 NTLQSGKQKVQGLRRCVEEIVFAFTYPRLDMEVSKHRNHLLKAPFCVHPKTGRVCIPI-- 358
+ G LR F+ Y D V+ +L+ P +H K G V I
Sbjct: 249 SAFSQGVGYKTLLRLFSLSTTFSKAY--FDGRVTVDVKRILRVPSSLHSKVGLVATYIGN 306
Query: 359 DPKDCEEFDP--TTVPTLSE 376
D KD E+F+P VP E
Sbjct: 307 DEKDLEKFNPFKDAVPKFRE 326
>sp|O26685|PRIS_METTH Probable DNA primase small subunit OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=priA PE=3 SV=1
Length = 323
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 121/307 (39%), Gaps = 45/307 (14%)
Query: 70 RFQSFNSESELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNVFAPVERELIFDIDI 129
R++ F E L ++ + P + +P KR + + ELIFD+D
Sbjct: 51 RYRVFRDERSLARFMRVRYPFAAYSSVAFYREPWKRKGWQRS----------ELIFDVDA 100
Query: 130 TDYDDVRYC-CSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRGVHCWVCD 188
D VR C C G VC C + ++ L+ D G I +YSG RG H V D
Sbjct: 101 KDLP-VRSCECDG--VCPTCLDEARELVLMMVDTLKGDLGLGDIHVIYSG-RGYHVRVLD 156
Query: 189 GKARRLTNEQRGAIADYFRVYKGNENSNKKVSFPGPLHPFLVRSYTEVLREFFEEKLLLS 248
+ L +E R A+ R G +K + V SY E + L
Sbjct: 157 PEVMELGSEVR---AEILRYTAGAREPRRKFTDG-------VSSY-----EMEHFSIPLG 201
Query: 249 QNLFSTEERYEKILSMIPDESVTSELRGKWQENRRSSN-SKEDINFFRWEQLKNTLQSGK 307
+ TE +L + DE + + R+ N ED RW + ++ + G
Sbjct: 202 YHRVFTERARHVLLHLRGDEDIEDVTARTVKTAVRNRNLILED----RWGEFRSVI--GP 255
Query: 308 QKVQGLRRCVEEIVFAFTYPRLDMEVSKHRNHLLKAPFCVHPKTGRVCIPIDPKDCEEFD 367
+ L + + +I LD +V+ +L+ P +H K +C+ + K+ E FD
Sbjct: 256 RVYPRLVKGISKINMRM----LDAKVTIDLKRILRLPTSLHSKVSMICMEV--KNPETFD 309
Query: 368 P--TTVP 372
P + VP
Sbjct: 310 PLKSAVP 316
>sp|A4WLS1|PRIS_PYRAR Probable DNA primase small subunit OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=priA PE=3 SV=1
Length = 312
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 9/153 (5%)
Query: 56 RREFSFTLDNDIYLRFQSFNSESELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNV 115
RREF+F +R +SFNS EL I EK P I Y P + +G
Sbjct: 24 RREFAFQPFGGGMVRHKSFNSVDELRRYIVEKTPKHIYHSVAYYERPGEEDMDRKGW--- 80
Query: 116 FAPVERELIFDIDITDYDDVRYCCSGADVCLECWP-LMTVAIKVIDTALRDDFGFDHILW 174
+ +L+FDID D+ + C A V L C K+ID +R +
Sbjct: 81 ---LGADLVFDID-GDHLNTEACKGSAVVSLRCLEDAKEETNKLIDILVR-ELDLRPTRI 135
Query: 175 VYSGRRGVHCWVCDGKARRLTNEQRGAIADYFR 207
V+SG RG H + + +L ++R + ++ +
Sbjct: 136 VFSGNRGFHIHITSEEVLKLGTKERREVVNFIK 168
>sp|Q8ZTY1|PRIS_PYRAE Probable DNA primase small subunit OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=priA PE=3 SV=1
Length = 312
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 9/153 (5%)
Query: 56 RREFSFTLDNDIYLRFQSFNSESELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNV 115
+REF+F + +R +SF S +L + EK P I Y P + +G
Sbjct: 24 KREFAFQPFSGGMVRHKSFKSLEDLRKFVVEKTPRHIYHSAAYYERPGEEDMERKGW--- 80
Query: 116 FAPVERELIFDIDITDYDDVRYCCSGADVCLECWP-LMTVAIKVIDTALRDDFGFDHILW 174
+ +LIFDID D+ D C V L C A K+ID ++ +
Sbjct: 81 ---IGADLIFDID-GDHLDTEACRESKIVSLRCLEDAREEANKLIDVLIQ-ELDLKPTRI 135
Query: 175 VYSGRRGVHCWVCDGKARRLTNEQRGAIADYFR 207
V+SG RG H V + +L + +R + +Y +
Sbjct: 136 VFSGNRGFHIHVSSEEVMKLGSRERRELVNYLK 168
>sp|Q0W8M0|PRIS_UNCMA Probable DNA primase small subunit OS=Uncultured methanogenic
archaeon RC-I GN=priA PE=3 SV=1
Length = 400
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 65/145 (44%), Gaps = 24/145 (16%)
Query: 70 RFQSFNSESELENSIKEKCPSKIDIGPVYSVDPAKRHAYA---QGGDNVFAPVERELIFD 126
R ++FNSE EL + ++ P+ Y RH A Q D + A +LIFD
Sbjct: 48 RHKAFNSEGELADYLRSMPPAH-----AYHSAAYYRHPQAPTMQEKDWLGA----DLIFD 98
Query: 127 IDITDYDDVRYCCSGA---DVCLECWPLMTVAIKVIDTALRDDFGFDH--ILWVYSGRRG 181
+D V+ G +V +E I++ID L DD GF + V+SG RG
Sbjct: 99 LDADHLPGVKNMTYGEMLDNVKVEI-------IRLIDEFLIDDLGFREKDMDIVFSGGRG 151
Query: 182 VHCWVCDGKARRLTNEQRGAIADYF 206
H V D + R L + +R I DY
Sbjct: 152 YHVHVRDERVRTLKSPERREIVDYL 176
>sp|A3DM85|PRIS_STAMF Probable DNA primase small subunit OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=priA PE=3 SV=1
Length = 377
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 76/192 (39%), Gaps = 33/192 (17%)
Query: 44 GRHPACDKSYFGRREFSF-TLDNDIYLRFQSFNSESELENSI-KEKCPSKIDIGPVYSVD 101
R P + Y +RE + +L+++ Y+R SF S + L N I EK P + Y
Sbjct: 21 SRKPLEEPLYIHKREIAIHSLEDEAYIRHLSFPSITHLYNFILNEKTPLHLYYSSAYYES 80
Query: 102 PAKRHAYAQGGDNVFAPVERELIFDIDITDY---DDVRYCCSGADVC----------LEC 148
P+ +G + +L+FD+D Y D + C + E
Sbjct: 81 PSVNKMELKGW------IGSDLMFDLDSDHYPGCDKILSICIEENTIYDGKIKTCPKTES 134
Query: 149 WPLMTVAIKV------------IDTALRDDFGFDHILWVYSGRRGVHCWVCDGKARRLTN 196
P++ IK I L D+ G +I +SG RG H V D K L +
Sbjct: 135 KPVIHPLIKTECIQKAYRDALRIKYILEDELGLKNIKIYFSGNRGFHVKVIDEKIWDLES 194
Query: 197 EQRGAIADYFRV 208
++R IA Y +
Sbjct: 195 DERREIASYISL 206
>sp|A1RRN3|PRIS_PYRIL Probable DNA primase small subunit OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=priA PE=3 SV=1
Length = 312
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 9/153 (5%)
Query: 56 RREFSFTLDNDIYLRFQSFNSESELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNV 115
+REF+F +R ++F + EL+ + EK P I Y P + +G
Sbjct: 24 KREFAFQYFEGGIVRHRAFKTLEELKKFVIEKTPRHIYHSSAYYERPGEEDMERKGW--- 80
Query: 116 FAPVERELIFDIDITDYDDVRYCCSGADVCLECW-PLMTVAIKVIDTALRDDFGFDHILW 174
+ +LIFDID D+ D C V + C A K+ID L + G
Sbjct: 81 ---LGADLIFDID-GDHLDTEACRESKLVSIACLNDAKEEANKLIDV-LTGELGLKPRRV 135
Query: 175 VYSGRRGVHCWVCDGKARRLTNEQRGAIADYFR 207
V+SG RG H V + + L ++R + +Y +
Sbjct: 136 VFSGNRGFHIHVSEEEVLTLGAKERRELVNYLK 168
>sp|Q973F6|PRIS_SULTO Probable DNA primase small subunit OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=priA PE=3
SV=2
Length = 318
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 35/192 (18%)
Query: 57 REFSFT-LDNDIYLRFQSFNSESELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNV 115
REF++ D++ Y+R SF+S EL I + P + P+ + +G
Sbjct: 31 REFAYQPFDSETYVRHLSFSSPQELRQYILQNVPLHLYYSSARYQLPSAKEMDEKGW--- 87
Query: 116 FAPVERELIFDIDITDYDDV---RYC-----------CSG------ADVCLECWPLMTVA 155
+ +L+FD+D + +V R+C C+G A++ EC +
Sbjct: 88 ---LGSDLLFDLDADEICEVKVRRFCPQDGYETLASNCNGEPPIEYAEITTECIMKVFEK 144
Query: 156 IKVIDTALRDDFGFDHILWVYSGRRGVHCWV-CDGKARRLTNEQRGAIADYFR------V 208
+I L++DFG + ++ +SG RG H V C L + R IA+YF +
Sbjct: 145 ALLIRDILKEDFGLNARIF-FSGNRGFHLRVTCYEDCALLDPDDRKEIAEYFTSPKPPVI 203
Query: 209 YKGNENSNKKVS 220
Y+GN + +++
Sbjct: 204 YEGNPGWSGRIA 215
>sp|A3MUU9|PRIS_PYRCJ Probable DNA primase small subunit OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=priA PE=3 SV=1
Length = 312
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 9/153 (5%)
Query: 56 RREFSFTLDNDIYLRFQSFNSESELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNV 115
+REF+F +R ++F + EL+ + EK P + P + +G
Sbjct: 24 KREFAFQPFVGGMVRHKAFKNLEELKRHLVEKTPRHVYYSTARYERPWEEDMERKGWLGA 83
Query: 116 FAPVERELIFDIDITDYDDVRYCCSGADVCLECWP-LMTVAIKVIDTALRDDFGFDHILW 174
+L+FDID D+ D C V L C A K+ID L ++ G
Sbjct: 84 ------DLVFDID-GDHLDTEACRESKVVSLACLEDAKEEANKLIDV-LTEELGLKPTKV 135
Query: 175 VYSGRRGVHCWVCDGKARRLTNEQRGAIADYFR 207
V+SG RG H V D + L ++R + +Y +
Sbjct: 136 VFSGNRGFHVHVVDEEVLALGQKERRELVNYLK 168
>sp|Q5JJ72|PRIS_PYRKO Probable DNA primase small subunit OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=priA PE=3
SV=1
Length = 346
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 127/323 (39%), Gaps = 48/323 (14%)
Query: 56 RREFSFTLDND-IYLRFQSFNSESELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDN 114
RREF F + R +F+ +LE+ I+ P + +P + +
Sbjct: 36 RREFGFDHTGEGPSDRKNAFSDVRDLEDYIRATAPYAAYSSVAFYRNPQEMEGWLGA--- 92
Query: 115 VFAPVERELIFDIDITDYDDVRYCCS---GADVCLECWPLMTVAIKVIDTALRDDFGFDH 171
EL+FDID D +R C + VC C + L++DFGF++
Sbjct: 93 -------ELVFDIDAKDLP-LRRCQNEHPSGQVCPICLEDAKELARDTLIILKEDFGFEN 144
Query: 172 ILWVYSGRRGVHCWVCDGKARRLTNEQRGAIADYFRVYKGNENSNKKVSFPGPLHPFLVR 231
I VYSG RG H V D A +L ++ R I Y ++ ++V+F +++
Sbjct: 145 IHVVYSG-RGYHIRVIDEWALKLDSKARERILSYV-------SAAEEVTFDDIQKRYIML 196
Query: 232 S--YTEVLREFFEEKLLLSQNLFSTEERYEKILSMIPDESVTSELRGKWQENRRSSNSKE 289
S Y V R F + + E L I + T+E E R ++
Sbjct: 197 SSGYFRVFRLRFG---------YFIQRINENHLKNIGLKRSTAE--KLLDEKTRQDIVEK 245
Query: 290 DINFFRWEQLKNTLQSGKQKVQGLRRCVEEIVFAFTYPR--LDMEVSKHRNHLLKAPFCV 347
+N K L + + V G R + + T+ + D V+ +L+ P +
Sbjct: 246 FVN-------KGLLAAFPEGV-GYRTLLRLFGLSTTFSKAYFDGRVTVDLKRILRLPSTL 297
Query: 348 HPKTGRVCIPI--DPKDCEEFDP 368
H K G V I D K E+FDP
Sbjct: 298 HSKVGLVATYIGSDEKRLEKFDP 320
>sp|Q9HPU3|PRIS_HALSA Probable DNA primase small subunit OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=priA PE=3
SV=2
Length = 391
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 105/250 (42%), Gaps = 14/250 (5%)
Query: 122 ELIFDIDITDYDDVRYCCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRG 181
+L+FD+D D + G D E A+ + L DFGF+ + +SG RG
Sbjct: 94 DLVFDLDA---DHLPRVTLGEDSYAEMLSKCKDALLRLLDFLERDFGFEELTVTFSGGRG 150
Query: 182 VHCWVCDGKARRLTNEQRGAIADYFRVYKGNENSNKKVSFPGPLHPFLVRSYTEVLREFF 241
H V D L +E+R I DY R GN+ + + + P+ + + TE +
Sbjct: 151 YHVHVRDAGVYELGSEERREIVDYVR---GNDLALETLVEAEPVGGRGLENPTE--KRML 205
Query: 242 EEKLLLSQNLFSTEERY-EKILSMIPDESVT--SELRGKWQENRRSSNSKEDINFFRWEQ 298
+ + + E + + ++ D++V +E G + + R+ + N ++
Sbjct: 206 PADGGWGRRVTTRLEAFADDLIERGEDDAVATLTEFDGVGERSARAIYNVVADNTTAVKR 265
Query: 299 LKNTLQSGKQKVQGLRRCVEEIVFAFTYPRLDMEVSKHRNHLLKAPFCVHPKTGRVCIPI 358
+ V RR ++E V A P +D V+ N L++ P +H +G +
Sbjct: 266 GNVDVHPAFLTVA--RRYIDETVAAEQAP-IDEPVTTDTNRLIRLPGSLHGGSGLEVQRL 322
Query: 359 DPKDCEEFDP 368
D ++FDP
Sbjct: 323 DRAALDDFDP 332
>sp|B0R5P1|PRIS_HALS3 Probable DNA primase small subunit OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=priA PE=3 SV=1
Length = 391
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 105/250 (42%), Gaps = 14/250 (5%)
Query: 122 ELIFDIDITDYDDVRYCCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRG 181
+L+FD+D D + G D E A+ + L DFGF+ + +SG RG
Sbjct: 94 DLVFDLDA---DHLPRVTLGEDSYAEMLSKCKDALLRLLDFLERDFGFEELTVTFSGGRG 150
Query: 182 VHCWVCDGKARRLTNEQRGAIADYFRVYKGNENSNKKVSFPGPLHPFLVRSYTEVLREFF 241
H V D L +E+R I DY R GN+ + + + P+ + + TE +
Sbjct: 151 YHVHVRDAGVYELGSEERREIVDYVR---GNDLALETLVEAEPVGGRGLENPTE--KRML 205
Query: 242 EEKLLLSQNLFSTEERY-EKILSMIPDESVT--SELRGKWQENRRSSNSKEDINFFRWEQ 298
+ + + E + + ++ D++V +E G + + R+ + N ++
Sbjct: 206 PADGGWGRRVTTRLEAFADDLIERGEDDAVATLTEFDGVGERSARAIYNVVADNTTAVKR 265
Query: 299 LKNTLQSGKQKVQGLRRCVEEIVFAFTYPRLDMEVSKHRNHLLKAPFCVHPKTGRVCIPI 358
+ V RR ++E V A P +D V+ N L++ P +H +G +
Sbjct: 266 GNVDVHPAFLTVA--RRYIDETVAAEQAP-IDEPVTTDTNRLIRLPGSLHGGSGLEVQRL 322
Query: 359 DPKDCEEFDP 368
D ++FDP
Sbjct: 323 DRAALDDFDP 332
>sp|B1YAF6|PRIS_PYRNV Probable DNA primase small subunit OS=Pyrobaculum neutrophilum
(strain DSM 2338 / JCM 9278 / V24Sta) GN=priA PE=3 SV=1
Length = 312
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 63/154 (40%), Gaps = 9/154 (5%)
Query: 56 RREFSFTLDNDIYLRFQSFNSESELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNV 115
+REF+F +R ++F S EL EK P + Y P + +G
Sbjct: 24 KREFAFQPFGGGMVRHKAFKSVEELRRFAVEKTPRHMYHSSAYYERPDEGDMERKGW--- 80
Query: 116 FAPVERELIFDIDITDYDDVRYCCSGADVCLECW-PLMTVAIKVIDTALRDDFGFDHILW 174
+ +LIFDID D+ D C V + C A K++D R+ G
Sbjct: 81 ---LGADLIFDID-GDHLDTEACRESKLVSIACLNDAREEANKLLDVLTRE-LGLKPRRI 135
Query: 175 VYSGRRGVHCWVCDGKARRLTNEQRGAIADYFRV 208
V+SG RG H V D + L +R + +Y +
Sbjct: 136 VFSGNRGFHVHVADEEVLALGARERRELVNYLKA 169
>sp|B6YV39|PRIS_THEON Probable DNA primase small subunit OS=Thermococcus onnurineus
(strain NA1) GN=priA PE=3 SV=1
Length = 346
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 74/321 (23%), Positives = 110/321 (34%), Gaps = 75/321 (23%)
Query: 70 RFQSFNSESELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNVFAPVERELIFDIDI 129
R F +LE+ IK P I DP + EL+FDID
Sbjct: 51 RKNVFMDVRDLEDYIKATAPYAIYSSVALYEDPKGMSGWLGA----------ELVFDIDA 100
Query: 130 TDYDDVRYCC---SGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRGVHCWV 186
D +R C VC C + L++DFGF+ + VYSG RG H V
Sbjct: 101 KDLP-LRRCGHIHEHGKVCPICLGDAKELARDTLVILKEDFGFEDVHVVYSG-RGYHIRV 158
Query: 187 CDGKARRLTNEQRGAIADYFRVYKGNENSNKKVSFPGPLHPFLVRSYTEVLREFFEEKLL 246
D A +L ++ R I Y ++ ++V+F + K++
Sbjct: 159 LDDWAIQLDSKSREKILAYI-------SAAEEVTF----------------EDIQSRKIM 195
Query: 247 LSQNLFSTEERYEKILSMIPDESVTSELRGKWQENRRSSNSKEDINFFRWEQLKNTLQSG 306
LS F LR + R + N +I R Q+K L+S
Sbjct: 196 LSSGYFR-----------------VFRLRFGYFIARANENHLLNIG-LRKGQVKKILESR 237
Query: 307 KQKVQGLRRCVEEIVF-----------------AFTYPRLDMEVSKHRNHLLKAPFCVHP 349
+ +G R F F+ D V+ +L+ P +H
Sbjct: 238 DEIYEGFVRKGLLTAFPQGIGYKTLARLFALSSTFSKAYFDGRVTVDVKRILRVPSSLHS 297
Query: 350 KTGRVCIPI--DPKDCEEFDP 368
K G V I D + E+F+P
Sbjct: 298 KVGLVATYIGSDERKLEKFNP 318
>sp|A0B688|PRIS_METTP Probable DNA primase small subunit OS=Methanosaeta thermophila
(strain DSM 6194 / PT) GN=priA PE=3 SV=1
Length = 395
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 81/342 (23%), Positives = 125/342 (36%), Gaps = 62/342 (18%)
Query: 57 REFSFTL-DNDIYLRFQSFNSESELENSIKEKCPSKIDIGPVYSVDP---AKRHAYAQGG 112
RE+ F D R +SF S EL + I+ P+ + Y + P + +G
Sbjct: 31 REWGFIFYDTPGMRRHRSFRSRKELVDYIRSTVPAHVYHSAAYYLKPDAPTMKEKIWKGA 90
Query: 113 DNVFAPVERELIFDIDITDYDDVRYCCSGADVCLECWPLMTVAIKVIDTALRDDFGFDH- 171
D LIFD+D + Y SG E + + L DFGFD
Sbjct: 91 D---------LIFDLDADHLAE--YRGSGIRDFREMLERVKGETMKLLEFLLSDFGFDER 139
Query: 172 -ILWVYSGRRGVHCWVCDGKARRLTNEQRGAIADYFR---------VYK----GNENSNK 217
I +SG RG H V D +L ++ R I DY ++K G+ +
Sbjct: 140 MISVAFSGGRGYHIHVRDKSVLKLRSDARREIVDYLTGRGLDPERFIHKIGVDGDAGVER 199
Query: 218 KVSFPGPLHPF---------LVRSYTEVLREF-FEEKLLLSQNLFSTEERYEKI-LSMIP 266
S GP + S LRE EE L L +N+ ++ ++ LS I
Sbjct: 200 ARSLRGPASDAPGWGGRINKAIESMVMHLRELDDEEALRLLKNVKGIGKQKARLFLSQIR 259
Query: 267 DESVTSELRGKWQENRRSSNSKEDINFFRWEQLKNTLQSGKQKVQGLRRCVEEIVFAFTY 326
+E+ +R +++FF+ SG + + +EE V A
Sbjct: 260 EENAIKSIRAG------------NLDFFKH-------ASGIWNLI-IPYIMEETVRALG- 298
Query: 327 PRLDMEVSKHRNHLLKAPFCVHPKTGRVCIPIDPKDCEEFDP 368
D V+ + L++ P +H TG + FDP
Sbjct: 299 GETDEPVTADVHRLIRFPESLHGGTGLRVTSLSINSLHAFDP 340
>sp|Q9V292|PRIS_PYRAB DNA primase small subunit OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=priA PE=3 SV=1
Length = 345
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 53/136 (38%), Gaps = 11/136 (8%)
Query: 70 RFQSFNSESELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNVFAPVERELIFDIDI 129
R S+ +LE+ IK P + + P + + EL+FDID
Sbjct: 49 RKNSYTDVRDLEDYIKATAPYAVYSSVAFYEKPQEMEGWLGA----------ELVFDIDA 98
Query: 130 TDYDDVRYCCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRGVHCWVCDG 189
D R VC C + L+++ GF+ + VYSG RG H V DG
Sbjct: 99 KDLPLRRCNHEPGKVCPICLNDAKEIARDTLIVLKEELGFEDVHVVYSG-RGYHIRVMDG 157
Query: 190 KARRLTNEQRGAIADY 205
A L ++ R I +
Sbjct: 158 WALSLDSKSRERILSF 173
>sp|Q9YEZ8|PRIS_AERPE Probable DNA primase small subunit OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=priA PE=3 SV=2
Length = 342
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 70/152 (46%), Gaps = 15/152 (9%)
Query: 57 REFSFTL-DNDIYLRFQSFNSESELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNV 115
REF+F L D D+Y+R F+S EL + + + P P R +G
Sbjct: 33 REFAFQLFDGDVYVRHIGFDSMEELLSYMAREAPKNAYYSVARYSLPTARSMEEKGW--- 89
Query: 116 FAPVERELIFDIDITDYDDVRYCCSG-ADVCLECWPLMTVAIKVIDTALRDDFGFDHILW 174
+ EL+FDID+ D + C D CL A+++++ AL DFG L+
Sbjct: 90 ---LGSELMFDIDV---DSLEGCGEVLGDSCLSRG--YKQAVRLVE-ALYRDFGVPSTLY 140
Query: 175 VYSGRRGVHCWVCDGKARRLTNEQRGAIADYF 206
++G RG H G RRL E+R IA YF
Sbjct: 141 -FTGNRGFHVLADCGWCRRLGREERREIARYF 171
>sp|Q12W69|PRIS_METBU Probable DNA primase small subunit OS=Methanococcoides burtonii
(strain DSM 6242) GN=priA PE=3 SV=1
Length = 390
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 73/331 (22%), Positives = 123/331 (37%), Gaps = 76/331 (22%)
Query: 70 RFQSFNSESELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNVFAPVERE------- 122
R +SF S E+E+ + P+ + Y P AP +E
Sbjct: 48 RHKSFGSAGEVEDYLTGMAPAHVYYSVAYYTYPN-------------APTMKEKQWLAAD 94
Query: 123 LIFDIDITDYDDVRYCCSGADVCLECWPLMTVAIKVIDTALRDDFGF--DHILWVYSGRR 180
LIFD+D D + + L+ T +K+ D L DDFGF + I V+SG R
Sbjct: 95 LIFDLDA---DHIPGAPNSYSDMLDHVKKET--LKLYDL-LTDDFGFKEEDIGAVFSGGR 148
Query: 181 GVHCWVCDGKARRLTNEQRGAIADYF-------------RVYKGNENSNKKVS--FP--- 222
G H + D + L + +R I DY + G+ S K FP
Sbjct: 149 GYHFHISDPRVLSLESAERREIVDYISGRGLNLDKIFVKKGVSGDAGSEKATMNVFPSED 208
Query: 223 -----GPLHPFLVRSYTEVLREFFEEKLLLSQNLFSTEERYEKILSMIPDESVTSELRGK 277
G ++ ++ E+ + EKL + ++ ++I+ ++ DE+ L+
Sbjct: 209 DGGWGGRINHHMIAYLRELAAKEDAEKLFTGFDRIG-KKTAKRIVEILRDETQVDLLKKG 267
Query: 278 WQENRRSSNSKEDINFFRWEQLKNTLQSGKQKVQGLRRCVEEIVFAFTYPRLDMEVSKHR 337
E N K+ +Q+ + R V E+ + P V+
Sbjct: 268 NMEALSRVN-------------KDIIQTLAE------RSVTELSASVDEP-----VTGDI 303
Query: 338 NHLLKAPFCVHPKTGRVCIPIDPKDCEEFDP 368
L++ P +H K+G + E+FDP
Sbjct: 304 KRLIRLPGSLHGKSGMCVTSLSISQLEDFDP 334
>sp|Q9P9H1|PRIS_PYRFU DNA primase small subunit OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=priA PE=1 SV=1
Length = 347
Score = 40.8 bits (94), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 122 ELIFDIDITDYDDVRYCCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRG 181
EL+FDID D R VC C K LR++ GF++I VYSG RG
Sbjct: 91 ELVFDIDAKDLPLKRCNHEPGTVCPICLEDAKELAKDTLIILREELGFENIHVVYSG-RG 149
Query: 182 VHCWVCDGKARRLTNEQRGAIADY 205
H + D A +L ++ R I +
Sbjct: 150 YHIRILDEWALQLDSKSRERILAF 173
>sp|O57934|PRIS_PYRHO DNA primase small subunit OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=priA PE=1 SV=1
Length = 346
Score = 40.4 bits (93), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 122 ELIFDIDITDYDDVRYCCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRG 181
EL+FDID D R VC C ++ LR++ GF+ I +YSG RG
Sbjct: 91 ELVFDIDAKDLPLRRCEHEPGTVCPICLNDAKEIVRDTVIILREELGFNDIHIIYSG-RG 149
Query: 182 VHCWVCDGKARRLTNEQRGAIADY 205
H V D A +L ++ R I +
Sbjct: 150 YHIRVLDEWALKLDSKSRERILSF 173
>sp|Q97Z83|PRIS_SULSO Probable DNA primase small subunit OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=priA
PE=1 SV=1
Length = 330
Score = 38.9 bits (89), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 72/174 (41%), Gaps = 32/174 (18%)
Query: 57 REFSFT-LDNDIYLRFQSFNSESELENS-IKEKCPSKIDIGPVYSVDPAKRHAYAQGGDN 114
REF+ +D Y+R SF+S EL + + P + P+ R+ +
Sbjct: 36 REFALQPFGSDTYVRHLSFSSSEELRDYLVNRNLPLHLFYSSARYQLPSARNMEEK---- 91
Query: 115 VFAPVERELIFDID---ITDYDDVRYC--CSGADVCLECWPLMTVAIKVIDTA------- 162
A + +L+FDID + +R+C C A V +C ++ ++
Sbjct: 92 --AWMGSDLLFDIDADHLCKLRSIRFCPVCGNAVVSEKCERDNVETLEYVEMTSECIKRG 149
Query: 163 ----------LRDDFGFDHILWVYSGRRGVHCWV-CDGKARRLTNEQRGAIADY 205
L DDFG ++ +SG RG H V C G L +++R IA+Y
Sbjct: 150 LEQTRNLVEILEDDFGLKPKVY-FSGNRGFHVQVDCYGNCALLDSDERKEIAEY 202
>sp|C3MYF5|PRIS_SULIM Probable DNA primase small subunit OS=Sulfolobus islandicus (strain
M.14.25 / Kamchatka #1) GN=priA PE=3 SV=1
Length = 330
Score = 38.9 bits (89), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 70/174 (40%), Gaps = 32/174 (18%)
Query: 57 REFSFT-LDNDIYLRFQSFNSESELENS-IKEKCPSKIDIGPVYSVDPAKRHAYAQGGDN 114
REF+ +D Y+R SF+S EL + + P + PA R +
Sbjct: 36 REFALQPFGSDTYIRHLSFSSSEELRDYLVNRNLPLHLFYSSARYQLPAARDMEEK---- 91
Query: 115 VFAPVERELIFDID---ITDYDDVRYC--CSGA-----------------DVCLECWPLM 152
A + +L+FDID I +R+C C A ++ EC
Sbjct: 92 --AWMGSDLLFDIDADHICKLRSIRFCPVCGNAITSEKCERDNVETLEYVEMTSECIKRG 149
Query: 153 TVAIKVIDTALRDDFGFDHILWVYSGRRGVHCWV-CDGKARRLTNEQRGAIADY 205
+ + L DDFG ++ +SG RG H V C G L +++R IA+Y
Sbjct: 150 LEEARNLVEILEDDFGLKPKVY-FSGNRGFHVQVDCYGDCALLDSDERKEIAEY 202
>sp|C3N549|PRIS_SULIA Probable DNA primase small subunit OS=Sulfolobus islandicus (strain
M.16.27) GN=priA PE=3 SV=1
Length = 330
Score = 38.9 bits (89), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 70/174 (40%), Gaps = 32/174 (18%)
Query: 57 REFSFT-LDNDIYLRFQSFNSESELENS-IKEKCPSKIDIGPVYSVDPAKRHAYAQGGDN 114
REF+ +D Y+R SF+S EL + + P + PA R +
Sbjct: 36 REFALQPFGSDTYIRHLSFSSSEELRDYLVNRNLPLHLFYSSARYQLPAARDMEEK---- 91
Query: 115 VFAPVERELIFDID---ITDYDDVRYC--CSGA-----------------DVCLECWPLM 152
A + +L+FDID I +R+C C A ++ EC
Sbjct: 92 --AWMGSDLLFDIDADHICKLRSIRFCPVCGNAITSEKCERDNVETLEYVEMTSECIKRG 149
Query: 153 TVAIKVIDTALRDDFGFDHILWVYSGRRGVHCWV-CDGKARRLTNEQRGAIADY 205
+ + L DDFG ++ +SG RG H V C G L +++R IA+Y
Sbjct: 150 LEEARNLVEILEDDFGLKPKVY-FSGNRGFHVQVDCYGDCALLDSDERKEIAEY 202
>sp|C3NDP7|PRIS_SULIY Probable DNA primase small subunit OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=priA PE=3 SV=1
Length = 330
Score = 38.5 bits (88), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 71/174 (40%), Gaps = 32/174 (18%)
Query: 57 REFSFT-LDNDIYLRFQSFNSESELENS-IKEKCPSKIDIGPVYSVDPAKRHAYAQGGDN 114
REF+ +D+Y+R SF+S EL + + P + P+ R +
Sbjct: 36 REFALQPFGSDMYIRHLSFSSSEELRDYLVNRNLPLHLFYSSARYQLPSARDMEEK---- 91
Query: 115 VFAPVERELIFDID---ITDYDDVRYC--CSGA-----------------DVCLECWPLM 152
A + +L+FDID I +R+C C A ++ EC
Sbjct: 92 --AWMGSDLLFDIDADHICKLRSIRFCPVCGNAITSEKCERDNVETLEYVEMTSECIKRG 149
Query: 153 TVAIKVIDTALRDDFGFDHILWVYSGRRGVHCWV-CDGKARRLTNEQRGAIADY 205
+ + L DDFG ++ +SG RG H V C G L +++R IA+Y
Sbjct: 150 LEEARNLVEILEDDFGLKPKVY-FSGNRGFHVQVDCYGDCALLDSDERKEIAEY 202
>sp|Q46C74|PRIS_METBF Probable DNA primase small subunit OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=priA PE=3 SV=1
Length = 414
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 79/355 (22%), Positives = 131/355 (36%), Gaps = 74/355 (20%)
Query: 57 REFSF----TLDNDIYLRFQSFNSESELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGG 112
RE++F ++ + + R ++F S E + + P+ + Y P R
Sbjct: 31 REWAFIFFDSMPDKMMHRHKAFGSPGEALDYLYGMAPAHVYNSTAYYEYPDARKM----- 85
Query: 113 DNVFAPVERELIFDIDITDYDDV--RYCCSGADVCLECWPLMTVAIKVIDTALRDDFGF- 169
N + ELIFD+D D Y V E + LM L +DFGF
Sbjct: 86 -NEKNWLGAELIFDLDADHLPDAPKNYADMLELVKKETFKLMDF--------LLEDFGFS 136
Query: 170 -DHILWVYSGRRGVHCWVCDGKARRLTNEQRGAIADY-----------FR-VYKGNENSN 216
I V+SG RG H V K +L + +R I +Y FR V E
Sbjct: 137 EQEIELVFSGGRGYHFHVRSPKVLKLGSAERREIVNYLSGRDLDFKYFFREVAMDGEFGT 196
Query: 217 KKVSFPG----PLHPFLV-------RSYTEVLREFFEEKL--LLSQNLFSTEERYEKI-- 261
+F G P LV R L ++ + + +++F RYEK+
Sbjct: 197 GSKTFKGMKNVPFKCTLVGYDSGWGRRIALYLTDYMKAECGKRYKKDMFPELRRYEKVGD 256
Query: 262 ------LSMIPDESVTSELRGKWQENRRSSNSKEDINFFRWEQLKNTLQSGKQKVQGLRR 315
+S+ E+ ++ K + + N K+ +F +R
Sbjct: 257 TTIKKLISLTNSENGLKDILEKGRLDFDVRNFKDIAAYF------------------MRE 298
Query: 316 CVEEIVFAFTYPRLDMEVSKHRNHLLKAPFCVHPKTGRVCIPIDPKDCEEFDPTT 370
VE+ + F +D V+ L++ P +H +G + + + E+FDP T
Sbjct: 299 SVEDFLHRFG-TSVDEPVTADIKRLIRVPGSLHGGSGMLVKKLALSELEKFDPLT 352
>sp|C3NI04|PRIS_SULIN Probable DNA primase small subunit OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=priA PE=3 SV=1
Length = 330
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 70/174 (40%), Gaps = 32/174 (18%)
Query: 57 REFSFT-LDNDIYLRFQSFNSESELENS-IKEKCPSKIDIGPVYSVDPAKRHAYAQGGDN 114
REF+ +D Y+R SF+S EL + + P + P+ R +
Sbjct: 36 REFALQPFGSDTYIRHLSFSSSEELRDYLVNRNLPLHLFYSSARYQLPSARDMEEK---- 91
Query: 115 VFAPVERELIFDID---ITDYDDVRYC--CSGA-----------------DVCLECWPLM 152
A + +L+FDID I +R+C C A ++ EC
Sbjct: 92 --AWMGSDLLFDIDADHICKLRSIRFCPVCGNAITSEKCERDNVETLEYVEMTSECIKRG 149
Query: 153 TVAIKVIDTALRDDFGFDHILWVYSGRRGVHCWV-CDGKARRLTNEQRGAIADY 205
+ + L DDFG ++ +SG RG H V C G L +++R IA+Y
Sbjct: 150 LEEARNLVEILEDDFGLKPKVY-FSGNRGFHVQVDCYGDCALLDSDERKEIAEY 202
>sp|C3MPG7|PRIS_SULIL Probable DNA primase small subunit OS=Sulfolobus islandicus (strain
L.S.2.15 / Lassen #1) GN=priA PE=3 SV=1
Length = 330
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 70/174 (40%), Gaps = 32/174 (18%)
Query: 57 REFSFT-LDNDIYLRFQSFNSESELENS-IKEKCPSKIDIGPVYSVDPAKRHAYAQGGDN 114
REF+ +D Y+R SF+S EL + + P + P+ R +
Sbjct: 36 REFALQPFGSDTYIRHLSFSSSEELRDYLVNRNLPLHLFYSSARYQLPSARDMEEK---- 91
Query: 115 VFAPVERELIFDID---ITDYDDVRYC--CSGA-----------------DVCLECWPLM 152
A + +L+FDID I +R+C C A ++ EC
Sbjct: 92 --AWMGSDLLFDIDADHICKLRSIRFCPVCGNAITSEKCERDNVETLEYVEMTSECIKRG 149
Query: 153 TVAIKVIDTALRDDFGFDHILWVYSGRRGVHCWV-CDGKARRLTNEQRGAIADY 205
+ + L DDFG ++ +SG RG H V C G L +++R IA+Y
Sbjct: 150 LEEARNLVEILEDDFGLKPKVY-FSGNRGFHVQVDCYGDCALLDSDERKEIAEY 202
>sp|C4KGQ2|PRIS_SULIK Probable DNA primase small subunit OS=Sulfolobus islandicus (strain
M.16.4 / Kamchatka #3) GN=priA PE=3 SV=1
Length = 330
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 69/174 (39%), Gaps = 32/174 (18%)
Query: 57 REFSFT-LDNDIYLRFQSFNSESELENS-IKEKCPSKIDIGPVYSVDPAKRHAYAQGGDN 114
REF+ +D Y+R SF+S EL + + P + P R +
Sbjct: 36 REFALQPFGSDTYIRHLSFSSSEELRDYLVNRNLPLHLFYSSARYQLPGARDMEEK---- 91
Query: 115 VFAPVERELIFDID---ITDYDDVRYC--CSGA-----------------DVCLECWPLM 152
A + +L+FDID I +R+C C A ++ EC
Sbjct: 92 --AWMGSDLLFDIDADHICKLRSIRFCPVCGNAITSEKCERDNVETLEYVEMTSECIKRG 149
Query: 153 TVAIKVIDTALRDDFGFDHILWVYSGRRGVHCWV-CDGKARRLTNEQRGAIADY 205
+ + L DDFG ++ +SG RG H V C G L +++R IA+Y
Sbjct: 150 LEEARNLVEILEDDFGLKPKVY-FSGNRGFHVQVDCYGDCALLDSDERKEIAEY 202
>sp|Q8PVZ4|PRIS_METMA Probable DNA primase small subunit OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=priA PE=3 SV=1
Length = 414
Score = 35.8 bits (81), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 64/156 (41%), Gaps = 18/156 (11%)
Query: 57 REFSFTLDNDI----YLRFQSFNSESELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGG 112
RE++F +D+ R +SF S E + + P+ + Y P R
Sbjct: 31 REWAFIFYDDMPEKMMHRHKSFGSPGEALDYLYGMAPAHVYNSTAYYEYPDARKM----- 85
Query: 113 DNVFAPVERELIFDIDITDYDDVRYCCSGADVCLECWPLMTVAIKVIDTALRDDFGFDH- 171
N + ELIFD+D D + LE T +K++D L DDFGF
Sbjct: 86 -NEKNWLGAELIFDLDA---DHLPNAPRNYADMLELVKKET--LKLMDFLL-DDFGFSEQ 138
Query: 172 -ILWVYSGRRGVHCWVCDGKARRLTNEQRGAIADYF 206
I V+SG RG H + K L + +R I +Y
Sbjct: 139 DIELVFSGGRGYHFHITSPKVLTLGSSERREIVNYL 174
>sp|Q4J9B0|PRIS_SULAC Probable DNA primase small subunit OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=priA PE=3 SV=1
Length = 322
Score = 35.8 bits (81), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 82/185 (44%), Gaps = 15/185 (8%)
Query: 57 REFSFT-LDNDIYLRFQSFNSESELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQG--GD 113
REF++ ++D Y+R +F+S EL + I P + P+ + +G G
Sbjct: 36 REFAYQPFNSDTYVRHLTFSSVDELRSFILSNVPLHLYFSAARYQIPSAKEMEQKGWLGS 95
Query: 114 NVFAPVERELIFDIDI----TDYDDVRYCCSG-----ADVCLECWPLMTVAIKVIDTALR 164
++ ++ + I +I++ + + + C G +++ ++C + V+ L
Sbjct: 96 DLLFDLDADDICEINVRRFCSGMEILSETCDGEVREISEITVDCINRVFENALVLKDILI 155
Query: 165 DDFGFDHILWVYSGRRGVHCWV-CDGKARRLTNEQRGAIADYFRVYKGNENSNKKVSFPG 223
DFG ++ +SG RG H V C + L +E R IA+Y SN + S PG
Sbjct: 156 QDFGLKPRIF-FSGNRGFHIRVDCYNEWANLDSEDRREIAEYIMSPSPPYESNSE-SGPG 213
Query: 224 PLHPF 228
L F
Sbjct: 214 WLGRF 218
>sp|B8GGQ0|PRIS_METPE Probable DNA primase small subunit OS=Methanosphaerula palustris
(strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=priA PE=3
SV=1
Length = 378
Score = 35.4 bits (80), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 50/138 (36%), Gaps = 16/138 (11%)
Query: 70 RFQSFNSESELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQGGDNVFAPVERELIFDIDI 129
R +F EL +K P+ + Y P +G +LIFD+D
Sbjct: 48 RHLAFGERQELTEYLKTMVPAHVFYSSAYYESPGAPTMAEKGWSGA------DLIFDLDA 101
Query: 130 TDYDDVRYCCSGADVCLECWPLMTVAIKVIDTALRDDFGFD--HILWVYSGRRGVHCWVC 187
Y A V E L+ V L D+ GF + V+SG RG H V
Sbjct: 102 DHIMHGSYQAMLARVKEEVQKLLAV--------LTDELGFSEKYCEVVFSGGRGYHIHVN 153
Query: 188 DGKARRLTNEQRGAIADY 205
D R + +R + +Y
Sbjct: 154 DLAVRSWGSAERREVVNY 171
>sp|Q9HJJ2|PRIS_THEAC Probable DNA primase small subunit OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=priA PE=3 SV=1
Length = 322
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 16/157 (10%)
Query: 54 FGRREFSFTLDNDIYLRFQSFNSESELENSIKEKCPSKIDIGPVYSVDPAKRHAYAQ--G 111
+RE + + +R N+ EL +++ P + Y P +R + G
Sbjct: 20 ISKREVGYMTFSGEVIRHLKINNRFELNMLLRDAAPMHVYSSAAYYRKPDERKMPEKEWG 79
Query: 112 GDNVFAPVERELIFDIDITDYDDVRYCCSGADVCLECWPLMTVAIKVIDTALRDDFGF-- 169
G +LIFD+D +D+ S ++ ++ + +++ L DFG
Sbjct: 80 G--------ADLIFDLD-SDHLPGSEKLSQKEMLIQ---IRDQTERLVSDFLIADFGIPK 127
Query: 170 DHILWVYSGRRGVHCWVCDGKARRLTNEQRGAIADYF 206
I +SG RG H + D + RL ++ R I DY
Sbjct: 128 SSIKIYFSGNRGYHVHISDDRVYRLGSDARREITDYI 164
>sp|A0RYW9|PRIS_CENSY Probable DNA primase small subunit OS=Cenarchaeum symbiosum (strain
A) GN=priA PE=3 SV=1
Length = 372
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 45/117 (38%), Gaps = 29/117 (24%)
Query: 120 ERELIFDIDITDYD-------DVRYCCS-----GADVCLECWPLMTVAIKV-----IDTA 162
E +LIFDID D R C S D C C P I V I A
Sbjct: 89 EADLIFDIDAKDLGLPCRKDHTFRRCSSCGRSHSGDGCPRCGPGAHDQISVLCKDCIGGA 148
Query: 163 ----------LRDDFGF--DHILWVYSGRRGVHCWVCDGKARRLTNEQRGAIADYFR 207
L +D G D ++ +SG G H + + + L + +RG +ADY R
Sbjct: 149 KKEVEKLMHILEEDLGVGRDSVVVYFSGNEGFHVHIGGTQFQGLGSRERGELADYVR 205
>sp|Q7XYS8|CHRDS_ARTSI Monoterpene synthase FDS-5, chloroplastic OS=Artemisia spiciformis
GN=FDS-5 PE=1 SV=1
Length = 394
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 367 DPTTVPTLSELLRELNTGDSRMDVDNEWEKTSLGKSIRFFRSSFLQPLLKSCKEEMESGY 426
DP V + E+ LN + D + + S+ K+I+ S +Q +LKSC E+M G+
Sbjct: 335 DPAKVAKVKEIYHALNLKGAYEDYETNLYENSM-KAIKAHPSIAVQAVLKSCLEKMYKGH 393
Query: 427 K 427
K
Sbjct: 394 K 394
>sp|P0C565|CPPAS_TANCI Chrysanthemyl diphosphate synthase, chloroplastic OS=Tanacetum
cinerariifolium PE=1 SV=1
Length = 395
Score = 33.1 bits (74), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 367 DPTTVPTLSELLRELNTGDSRMDVDNEWEKTSLGKSIRFFRSSFLQPLLKSCKEEMESGY 426
DP+ V + EL L+ + D + +TS+ SI+ + +Q +LKSC E+M G+
Sbjct: 336 DPSKVAKVKELYHALDLKGAYEDYETNLYETSM-TSIKAHPNIAVQAVLKSCLEKMYKGH 394
Query: 427 K 427
K
Sbjct: 395 K 395
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,983,031
Number of Sequences: 539616
Number of extensions: 7788769
Number of successful extensions: 16434
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 16357
Number of HSP's gapped (non-prelim): 99
length of query: 439
length of database: 191,569,459
effective HSP length: 121
effective length of query: 318
effective length of database: 126,275,923
effective search space: 40155743514
effective search space used: 40155743514
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)