Query 013616
Match_columns 439
No_of_seqs 188 out of 405
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 13:54:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013616.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013616hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v33_A DNA primase small subun 100.0 6.4E-90 2.2E-94 699.9 9.2 316 11-376 21-350 (366)
2 1zt2_A DNA primase small subun 100.0 5.2E-65 1.8E-69 510.9 14.9 232 14-363 11-269 (330)
3 2fao_A Probable ATP-dependent 95.3 0.015 5.1E-07 58.0 5.1 46 336-381 233-282 (309)
4 2iru_A Putative DNA ligase-lik 95.3 0.016 5.5E-07 57.6 5.3 66 121-204 135-200 (303)
5 4cpa_I Metallocarboxypeptidase 60.3 1.6 5.6E-05 29.9 -0.2 14 139-152 18-31 (38)
6 2hly_A AGR_C_4178P, hypothetic 46.7 4.6 0.00016 37.7 0.3 48 142-194 29-101 (207)
7 1gvf_A Tagatose-bisphosphate a 30.3 8.1 0.00028 37.8 -0.9 27 327-353 187-213 (286)
8 3q94_A Fructose-bisphosphate a 27.7 9 0.00031 37.6 -1.1 26 327-352 191-216 (288)
9 3bb7_A Interpain A; cysteine p 24.8 47 0.0016 32.8 3.5 17 174-190 251-274 (321)
10 2zxy_A Cytochrome C552, cytoch 23.5 44 0.0015 24.7 2.4 17 191-207 68-84 (87)
11 1c53_A Cytochrome C553; electr 23.5 37 0.0013 25.2 2.0 17 191-207 61-77 (79)
12 1pzw_A Transcription factor gr 23.3 53 0.0018 24.7 2.9 21 142-162 49-69 (80)
13 3j21_R 50S ribosomal protein L 20.9 26 0.00087 29.2 0.6 23 328-355 44-66 (97)
14 2obb_A Hypothetical protein; s 20.8 1.4E+02 0.0049 25.7 5.4 57 122-207 5-62 (142)
15 1kx2_A Mono-heme C-type cytoch 20.6 47 0.0016 24.9 2.1 16 192-207 63-78 (81)
16 1cch_A Cytochrome C551; electr 20.2 51 0.0018 24.2 2.2 15 193-207 65-79 (82)
No 1
>1v33_A DNA primase small subunit; nucleotidyl transferase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: DNA; 1.80A {Pyrococcus horikoshii} SCOP: d.264.1.1 PDB: 1v34_A* 1g71_A*
Probab=100.00 E-value=6.4e-90 Score=699.87 Aligned_cols=316 Identities=21% Similarity=0.322 Sum_probs=265.1
Q ss_pred CCCCCCChHHHHHHhhhcCChhhhhhhhccCCCCCCCCCCCCCCCCceeEEEe-CCCeeecccccCCHHHHHHHHHHhCC
Q 013616 11 VIPDGFNPNYLKVYYGRLFPHADIFKWMSYGNDGRHPACDKSYFGRREFSFTL-DNDIYLRFQSFNSESELENSIKEKCP 89 (439)
Q Consensus 11 ~~~~~~~~~~l~~YY~~lfP~~~~~~WL~y~~~~~~~~~~~~~~~~REfaf~~-~~~~y~R~~sF~~~~el~~~l~~~~P 89 (439)
|.-...++++|+.||+++||++++++||++ ++++|||||++ .+++|+||+||+|.+||+++|++++|
T Consensus 21 ~~~~~~~~~~l~~YY~r~fp~~~~~~wl~~------------~~~~REfaf~~~~~~~~~R~~sF~~~~el~~~l~~~~P 88 (366)
T 1v33_A 21 MLLREVTREERKNFYTNEWKVKDIPDFIVK------------TLELREFGFDHSGEGPSDRKNQYTDIRDLEDYIRATAP 88 (366)
T ss_dssp CCSCCCCHHHHHHHHHHTCCGGGSCHHHHT------------TGGGCCEEEESSSSCSCEEEECCSSHHHHHHHHHHHCC
T ss_pred eeeccCCHHHHHHHHHhhCCcccccccccc------------cCcCeEEEEEECCCCccccccccCCHHHHHHHHHHhCC
Confidence 555678899999999999999999999975 38999999997 68899999999999999999999999
Q ss_pred CceeeccccccCccchhhhccCCCCCcCcccceEEEeccCCCCCCcccc-cCCCccccccHHHHHHHHHHHHHHHhhhcC
Q 013616 90 SKIDIGPVYSVDPAKRHAYAQGGDNVFAPVERELIFDIDITDYDDVRYC-CSGADVCLECWPLMTVAIKVIDTALRDDFG 168 (439)
Q Consensus 90 ~~i~igavY~~~P~~~~~~~~~~~~~f~p~~~ELVFDID~~dyd~ir~C-C~~~~iC~kCw~~~~~a~klld~~L~~dFG 168 (439)
.|+|+|||||.+|.+++ +| .++||||||||||| ++|+| |++++||.+||.+|++|+++|+++|++|||
T Consensus 89 ~~iy~saayy~~P~~~k--------~~--~~~ELVFDID~~d~-diRtC~C~~~~iC~kC~~~~~~a~~~l~~~L~~dFG 157 (366)
T 1v33_A 89 YAVYSSVALYEKPQEME--------GW--LGTELVFDIDAKDL-PLRRCEHEPGTVCPICLNDAKEIVRDTVIILREELG 157 (366)
T ss_dssp SEEEEESEEEEETTTTE--------EE--EEECEEEEEEGGGC-SSCSSCSCTTCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEcceeecChhhcC--------Cc--cccceEEEecCCcC-CcCccCCCCcchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999853 35 78999999999999 69999 999999999999999999999999999999
Q ss_pred CceeEEEEeCCCceEEEeechhhccCChHHHHHHHhHhhhccCCC-cccceeeCCCCCCcchh----hHHHHHHHHHHHH
Q 013616 169 FDHILWVYSGRRGVHCWVCDGKARRLTNEQRGAIADYFRVYKGNE-NSNKKVSFPGPLHPFLV----RSYTEVLREFFEE 243 (439)
Q Consensus 169 f~~i~~VFSGrRG~H~wV~D~~ar~L~~e~R~aIvdYl~vv~G~~-~~~k~v~l~~~~hP~i~----r~~~~il~~~f~~ 243 (439)
|++++||||| |||||||||++||.|++++|+|||+||+++...+ +..+++++..+.||++. |++ .++.++|..
T Consensus 158 f~~i~~vfSG-RG~HvwV~D~~ar~l~~~~R~~IvdYl~~~~~~~~~~~~~v~~~~~~h~~~~~~~~r~~-~~~~~~f~~ 235 (366)
T 1v33_A 158 FNDIHIIYSG-RGYHIRVLDEWALKLDSKSRERILSFVSASEIEDVEEFRKLLLNKRGWFVLNHGYPRAF-RLRFGYFIL 235 (366)
T ss_dssp CCCEEEEECS-SEEEEEECCHHHHTCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHCGGGGGCSSSHHHHH-HHHHHHHHT
T ss_pred CceeEEEEeC-CeEEEEEecHHhhhcCHHHHHHHhhhEEeeccCCccccceeeccCCCCcccchhHHHHH-HHHHHHHHH
Confidence 9999999999 9999999999999999999999999999765322 23456776667888766 667 667778876
Q ss_pred HHhhhcCCCC---CHHHHHHHHccCCChhHHHHHHhhhhhccCCCCCcccchHHhHHHHHHHHhccchhhhhHHHHHHHH
Q 013616 244 KLLLSQNLFS---TEERYEKILSMIPDESVTSELRGKWQENRRSSNSKEDINFFRWEQLKNTLQSGKQKVQGLRRCVEEI 320 (439)
Q Consensus 244 ~il~~q~~l~---~~~~~~~lL~~lpd~~~~~~l~~~~~~~~~~~~~~~~~s~~~W~~l~~~~~~~~~~~~~~~~~~~ei 320 (439)
.++ +|++|. +++.++++|+.. .++.+ ..++.++|+++++.. ....+.. +.++
T Consensus 236 ~~~-~~~~l~~g~~~~~~~~~l~~~------~~~~~------------~~~s~~~w~~~~~~~-----~~~~~~~-l~~~ 290 (366)
T 1v33_A 236 RIK-LPHLINAGIRKSIAKSILKSK------EEIYE------------EFVRKAILAAFPQGV-----GIESLAK-LFAL 290 (366)
T ss_dssp TCC-HHHHHHTTCCHHHHHHHHHTH------HHHHH------------HTTTTCCGGGSCTTC-----HHHHHHH-HHHH
T ss_pred Hhh-hhhhhhccCCHHHHHHHHHHH------HHhhh------------cccchhhHHHHhhhh-----hhhHHHH-HHHH
Confidence 554 344544 677788877631 11111 124677888765321 1122333 3478
Q ss_pred HHHhhccccccccccccccccccCccccCCCccEEEEcCCCC--CCCCCCC--CCCcHHH
Q 013616 321 VFAFTYPRLDMEVSKHRNHLLKAPFCVHPKTGRVCIPIDPKD--CEEFDPT--TVPTLSE 376 (439)
Q Consensus 321 vl~~~ypRLD~~VTkd~nHLLKsPfcvHpkTG~vcVPid~~~--l~~FDP~--~VPtl~~ 376 (439)
+++++|||||+|||+|+|||||+|||||||||+|||||++++ ++.|||+ +|||+.+
T Consensus 291 v~~~~~~~lD~~VT~d~nhLLK~PfslHpkTG~vcvPid~~~~~~~~FDPl~daVPtf~~ 350 (366)
T 1v33_A 291 STRFSKSYFDGRVTVDLKRILRLPSTLHSKVGLIAKYVGTNERDVMRFNPFKHAVPKFRK 350 (366)
T ss_dssp HHHHHHTSSCHHHHHCTTCEEECTTSEETTTTEECCEEESSHHHHHHCCHHHHSCCGGGH
T ss_pred HHHhhhcccCcccccCcceeeecCccccCCCCcEEEEeccccccccccCCccccCCeecC
Confidence 899999999999999999999999999999999999999988 9999995 8999753
No 2
>1zt2_A DNA primase small subunit; heterodimeric complex, replication, transferase; HET: DNA; 3.33A {Sulfolobus solfataricus} SCOP: d.264.1.1
Probab=100.00 E-value=5.2e-65 Score=510.89 Aligned_cols=232 Identities=21% Similarity=0.337 Sum_probs=191.5
Q ss_pred CCCChHHHHHHhhhcCChhhhhhhhccCCCCCCCCCCCCCCCCceeEEE-eCCCeeecccccCCHHHHHHHHHH-hCCCc
Q 013616 14 DGFNPNYLKVYYGRLFPHADIFKWMSYGNDGRHPACDKSYFGRREFSFT-LDNDIYLRFQSFNSESELENSIKE-KCPSK 91 (439)
Q Consensus 14 ~~~~~~~l~~YY~~lfP~~~~~~WL~y~~~~~~~~~~~~~~~~REfaf~-~~~~~y~R~~sF~~~~el~~~l~~-~~P~~ 91 (439)
..+.+++|+.||++ ||.. .|.++++|||||+ +.+++|+||+||+|.+||+++|++ ++|.|
T Consensus 11 ~~~l~~~~~~YY~~-~~~~-----------------~~~~~~~REfaf~~~~~~~~~R~~sF~~~~el~~~l~~~~~P~~ 72 (330)
T 1zt2_A 11 TNLIKSFFRNYYLN-AELE-----------------LPKDMELREFALQPFGSDTYVRHLSFSSSEELRDYLVNRNLPLH 72 (330)
T ss_dssp CCHHHHHHHHHHHH-CCCC-----------------CCTTGGGSCEEEEETTCSSCCCCBCCSSHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHhc-CCCC-----------------CCCcccceEEEEEEcCCCeeeeecccCCHHHHHHHHHhccCCce
Confidence 45688999999998 7721 2788999999996 678899999999999999999999 99999
Q ss_pred eeeccccccCccchhhhccCCCCCcCcccceEEEeccCCCCC---CcccccCCC-----ccccccH--------------
Q 013616 92 IDIGPVYSVDPAKRHAYAQGGDNVFAPVERELIFDIDITDYD---DVRYCCSGA-----DVCLECW-------------- 149 (439)
Q Consensus 92 i~igavY~~~P~~~~~~~~~~~~~f~p~~~ELVFDID~~dyd---~ir~CC~~~-----~iC~kCw-------------- 149 (439)
+|||++||..|+++.+..+ +| ++||||||||||||| ++|+||+++ ++|+|||
T Consensus 73 v~~s~a~Y~~P~~~~m~~k----~~--~~rELVFDID~~d~d~~~~~r~C~~~~~~~~~~~C~kC~~~~~~~~~ic~~cl 146 (330)
T 1zt2_A 73 LFYSSARYQLPSARNMEEK----AW--MGSDLLFDIDADHLCKLRSIRFCPVCGNAVVSEKCERDNVETLEYVEMTSECI 146 (330)
T ss_dssp EEEESBCCSCTTCSSHHHH----CC--CCBCEEEEBCHHHHHCCEEEEECTTTCCBCSSSEETTTTEECEEEEECCHHHH
T ss_pred EEeccceecCccccccccc----Cc--CceeeEEEecCCcCcccccccccccccccccccccccccccccccchhhHHHH
Confidence 9999666666999777665 45 999999999999999 899999887 7888885
Q ss_pred HHHH-HHHHHHHHHHhhhcCCceeEEEEeCCCceEEEee-chhhccCChHHHHHHHhHhhhccCCCcccceeeCCCCCCc
Q 013616 150 PLMT-VAIKVIDTALRDDFGFDHILWVYSGRRGVHCWVC-DGKARRLTNEQRGAIADYFRVYKGNENSNKKVSFPGPLHP 227 (439)
Q Consensus 150 ~~~~-~a~klld~~L~~dFGf~~i~~VFSGrRG~H~wV~-D~~ar~L~~e~R~aIvdYl~vv~G~~~~~k~v~l~~~~hP 227 (439)
.+++ +|++|++ +|++||||+| +|||||||||||||| |+.|+.|++++|++||+|++++.+ . + +
T Consensus 147 ~~~k~~a~klld-~L~~dFGf~~-~ivFSG~RG~H~wV~~D~~a~~l~~~~R~~Iv~Y~~~~~~-~---~---~------ 211 (330)
T 1zt2_A 147 KRGLEQTRNLVE-ILEDDFGLKP-KVYFSGNRGFHVQVDCYGNCALLDSDERKEIAEYVMGIGV-P---G---Y------ 211 (330)
T ss_dssp HHHHHHHHHHHH-HHHHTTCCCC-EEEECSSSSEEEEECCCSGGGGCCHHHHHHHHHHHTTSSC-C---C---C------
T ss_pred HHHHHHHHHHHH-HHHHHcCCCe-eEEEeCCCceEEEEeCCHHHhhcCHHHHHHHHHHHHhccc-h---h---H------
Confidence 4443 6999999 9999999999 899999999999999 999999999999999999996421 1 0 1
Q ss_pred chhhHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHccCCChhHHHHHHhhhhhccCCCCCcccchHHhHHHHHHHHhccc
Q 013616 228 FLVRSYTEVLREFFEEKLLLSQNLFSTEERYEKILSMIPDESVTSELRGKWQENRRSSNSKEDINFFRWEQLKNTLQSGK 307 (439)
Q Consensus 228 ~i~r~~~~il~~~f~~~il~~q~~l~~~~~~~~lL~~lpd~~~~~~l~~~~~~~~~~~~~~~~~s~~~W~~l~~~~~~~~ 307 (439)
.++ ++.+.+|.+.+. +
T Consensus 212 --~~~-------------------~~~~~g~~~r~~----------------------------------------~--- 227 (330)
T 1zt2_A 212 --PGG-------------------SENAPGWVGRKN----------------------------------------R--- 227 (330)
T ss_dssp --SSC-------------------CTTSSSHHHHHH----------------------------------------T---
T ss_pred --HHh-------------------hccccchHHHHh----------------------------------------c---
Confidence 111 011112221110 0
Q ss_pred hhhhhHHHHHHHHHHHhhccccccccccccccccccCccccCCCccEEEEcCC-CCC
Q 013616 308 QKVQGLRRCVEEIVFAFTYPRLDMEVSKHRNHLLKAPFCVHPKTGRVCIPIDP-KDC 363 (439)
Q Consensus 308 ~~~~~~~~~~~eivl~~~ypRLD~~VTkd~nHLLKsPfcvHpkTG~vcVPid~-~~l 363 (439)
. ..+|+||++||+|+|||||+|||||||||++||||++ +++
T Consensus 228 -----------~----~~~~~iD~~Vt~d~~rLiR~P~SlH~KtG~~~~pi~~~~~l 269 (330)
T 1zt2_A 228 -----------G----INGVTIDEQVTIDVKRLIRIPNSLHGKSGLIVKRVPNLDDF 269 (330)
T ss_dssp -----------T----CCCCCBCHHHHHCSSCEEECTTCEETTTTEECCEESCTTTC
T ss_pred -----------c----CcccccCcceecCCceEEecCccEeCCCCeEEEEccccccC
Confidence 0 1479999999999999999999999999999999998 776
No 3
>2fao_A Probable ATP-dependent DNA ligase; polymerase, primase, NHEJ, hydrolase/transferase complex; 1.50A {Pseudomonas aeruginosa} PDB: 2faq_A* 2far_A*
Probab=95.33 E-value=0.015 Score=57.98 Aligned_cols=46 Identities=22% Similarity=0.419 Sum_probs=38.0
Q ss_pred ccccccccCccccCCCc-cEEEEcCCCCCCCC-CCC--CCCcHHHHHHhh
Q 013616 336 HRNHLLKAPFCVHPKTG-RVCIPIDPKDCEEF-DPT--TVPTLSELLREL 381 (439)
Q Consensus 336 d~nHLLKsPfcvHpkTG-~vcVPid~~~l~~F-DP~--~VPtl~~l~~e~ 381 (439)
+..+-+=+|+|+.+..| -|++||..++|+.- +|. ++.|+-+.+.++
T Consensus 233 ~~g~T~vapYS~Rarpga~VS~Pl~W~El~~~~~p~~fti~~v~~Rl~~~ 282 (309)
T 2fao_A 233 SRGASTVAAYSVRAREGLPVSVPVFREELDSLQGANQWNLRSLPQRLDEL 282 (309)
T ss_dssp STTCCEECTTCBCSSTTCBBCCEECGGGGGGCCCSCCCBTTTHHHHHHHH
T ss_pred CCCCeEEccCCCCCCCCCceecccCHHHhCCCCCcccCChhhHHHHHHhc
Confidence 45667789999999999 79999999999764 664 788888888874
No 4
>2iru_A Putative DNA ligase-like protein RV0938/MT0965; polymerase, primase, NHEJ, transferase; 1.65A {Mycobacterium tuberculosis} PDB: 2irx_A* 2iry_A* 2r9l_A* 3pky_A*
Probab=95.31 E-value=0.016 Score=57.58 Aligned_cols=66 Identities=20% Similarity=0.301 Sum_probs=44.1
Q ss_pred ceEEEeccCCCCCCcccccCCCccccccHHHHHHHHHHHHHHHhhhcCCceeEEEEeCCCceEEEeechhhccCChHHHH
Q 013616 121 RELIFDIDITDYDDVRYCCSGADVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRGVHCWVCDGKARRLTNEQRG 200 (439)
Q Consensus 121 ~ELVFDID~~dyd~ir~CC~~~~iC~kCw~~~~~a~klld~~L~~dFGf~~i~~VFSGrRG~H~wV~D~~ar~L~~e~R~ 200 (439)
-+||||+|-..-.+ |..+..|..++...| +++|.... ..-||++|+|++|-=+ ...+-++=+
T Consensus 135 D~lvfDLDP~~~~~--------------f~~v~~aA~~~r~~L-~~lGL~~f-~KTSGgkGlHV~vPl~--~~~~~~~vr 196 (303)
T 2iru_A 135 TRLVFDLDPGEGVM--------------MAQLAEVARAVRDLL-ADIGLVTF-PVTSGSKGLHLYTPLD--EPVSSRGAT 196 (303)
T ss_dssp EEEEEEEEECTTCC--------------HHHHHHHHHHHHHHH-HTTTCCCE-EEECSSSCEEEEEEEE--EEECHHHHH
T ss_pred CEEEEECCCCCCCC--------------HHHHHHHHHHHHHHH-HHcCCccc-eEccCCCeEEEEEEcC--CCCCHHHHH
Confidence 58999999874433 334455667777566 78899887 5789999999999421 134544444
Q ss_pred HHHh
Q 013616 201 AIAD 204 (439)
Q Consensus 201 aIvd 204 (439)
+.+.
T Consensus 197 ~fa~ 200 (303)
T 2iru_A 197 VLAK 200 (303)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 5
>4cpa_I Metallocarboxypeptidase inhibitor; hydrolase (C-terminal peptidase); 2.50A {Solanum tuberosum} SCOP: g.3.2.1 PDB: 1h20_A
Probab=60.30 E-value=1.6 Score=29.94 Aligned_cols=14 Identities=50% Similarity=1.177 Sum_probs=12.7
Q ss_pred cCCCccccccHHHH
Q 013616 139 CSGADVCLECWPLM 152 (439)
Q Consensus 139 C~~~~iC~kCw~~~ 152 (439)
|++++.|..||.|.
T Consensus 18 CS~gw~CqaC~nfa 31 (38)
T 4cpa_I 18 CSGAWFCQACWNSA 31 (38)
T ss_dssp SCCCSSCCEEETTT
T ss_pred cccchHHHHHHhhc
Confidence 88999999999875
No 6
>2hly_A AGR_C_4178P, hypothetical protein ATU2299; ATC2257, MCSG, structural genomics, PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens str} SCOP: d.3.1.19
Probab=46.67 E-value=4.6 Score=37.71 Aligned_cols=48 Identities=23% Similarity=0.432 Sum_probs=29.9
Q ss_pred CccccccHHHHHHHHHHHHHHHhhhcCCcee------------------------EEEEeCCCceEEEe-echhhccC
Q 013616 142 ADVCLECWPLMTVAIKVIDTALRDDFGFDHI------------------------LWVYSGRRGVHCWV-CDGKARRL 194 (439)
Q Consensus 142 ~~iC~kCw~~~~~a~klld~~L~~dFGf~~i------------------------~~VFSGrRG~H~wV-~D~~ar~L 194 (439)
++.-.-||-|...++-|| ++.++.|.. .|+.+| -|||||| ||..|...
T Consensus 29 Ad~~~Ac~fFs~~Ga~IL----~~hY~i~A~~~~G~aay~l~~~vl~Fg~~~edg~v~~~~-d~FH~WVe~Dg~~IDF 101 (207)
T 2hly_A 29 ADPASASMYFSTFGAFIL----QQHYKVKAVPKGGLAAYNLGGTVLLFADHREDGYVTGAG-ENFHCWVEADGWAIDF 101 (207)
T ss_dssp CCHHHHHHHHHHHHHHHH----HHHHCCCEEEEEEEEEEEETTEEEEESBCCC--CBCCSS-TTCEEEEEETTEEEET
T ss_pred CChhHHHHHHHHHHHHHH----HHHhcccceeccchhhhccCCceEEEeecccCCEEecCC-CceEEEEEECCEEeee
Confidence 455557898888776655 455555421 122223 4999999 78877643
No 7
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=30.29 E-value=8.1 Score=37.82 Aligned_cols=27 Identities=15% Similarity=0.427 Sum_probs=23.4
Q ss_pred cccccccccccccccccCccccCCCcc
Q 013616 327 PRLDMEVSKHRNHLLKAPFCVHPKTGR 353 (439)
Q Consensus 327 pRLD~~VTkd~nHLLKsPfcvHpkTG~ 353 (439)
|+||.+.-+.++..+..|..+||+||-
T Consensus 187 p~Ld~~~L~~I~~~~~vpLVlHGgSG~ 213 (286)
T 1gvf_A 187 PKIDFQRLAEIREVVDVPLVLHGASDV 213 (286)
T ss_dssp CCCCHHHHHHHHHHCCSCEEECCCTTC
T ss_pred CccCHHHHHHHHHhcCCCEEEECCCCC
Confidence 778888888888888899999999985
No 8
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=27.74 E-value=9 Score=37.57 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=23.0
Q ss_pred cccccccccccccccccCccccCCCc
Q 013616 327 PRLDMEVSKHRNHLLKAPFCVHPKTG 352 (439)
Q Consensus 327 pRLD~~VTkd~nHLLKsPfcvHpkTG 352 (439)
|+||-+.-+.++..+..|..+||+||
T Consensus 191 p~Ld~~~L~~I~~~v~vpLVlHGgSG 216 (288)
T 3q94_A 191 PNLGFAEMEQVRDFTGVPLVLHGGTG 216 (288)
T ss_dssp CCCCHHHHHHHHHHHCSCEEECCCTT
T ss_pred CccCHHHHHHHHHhcCCCEEEeCCCC
Confidence 77888888888888889999999998
No 9
>3bb7_A Interpain A; cysteine protease, zymogen activation, bacterial odontopatho hydrolase; 1.50A {Prevotella intermedia} PDB: 3bba_A
Probab=24.77 E-value=47 Score=32.83 Aligned_cols=17 Identities=35% Similarity=0.661 Sum_probs=12.9
Q ss_pred EEEeCC-------CceEEEeechh
Q 013616 174 WVYSGR-------RGVHCWVCDGK 190 (439)
Q Consensus 174 ~VFSGr-------RG~H~wV~D~~ 190 (439)
++++|. .|=|+||||--
T Consensus 251 V~~~G~~~~~~~~~~GHafV~DGY 274 (321)
T 3bb7_A 251 LIYGGVSPGSMGQDAGHAFVIDGY 274 (321)
T ss_dssp EEEEEC-------CCCEEEEEEEE
T ss_pred EEEEEecCCCCCCCCceEEEEccc
Confidence 677753 47899999974
No 10
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=23.49 E-value=44 Score=24.70 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=15.5
Q ss_pred hccCChHHHHHHHhHhh
Q 013616 191 ARRLTNEQRGAIADYFR 207 (439)
Q Consensus 191 ar~L~~e~R~aIvdYl~ 207 (439)
+..|+++++.+|+.||.
T Consensus 68 ~~~ls~~ei~~l~~yl~ 84 (87)
T 2zxy_A 68 LKGLSDAELKALADFIL 84 (87)
T ss_dssp GGGCCHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHH
Confidence 45899999999999997
No 11
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=23.46 E-value=37 Score=25.22 Aligned_cols=17 Identities=35% Similarity=0.685 Sum_probs=15.2
Q ss_pred hccCChHHHHHHHhHhh
Q 013616 191 ARRLTNEQRGAIADYFR 207 (439)
Q Consensus 191 ar~L~~e~R~aIvdYl~ 207 (439)
+..|+++++.+|+.||.
T Consensus 61 ~~~Ls~~ei~~l~~Yl~ 77 (79)
T 1c53_A 61 VKRYSDEEMKAMADYMS 77 (79)
T ss_pred HhhCCHHHHHHHHHHHH
Confidence 45799999999999996
No 12
>1pzw_A Transcription factor grauzone; dimerization, transcription regulation, treble-CLEF zinc FIN transcription; 2.00A {Drosophila melanogaster} SCOP: g.39.1.10
Probab=23.35 E-value=53 Score=24.66 Aligned_cols=21 Identities=14% Similarity=0.414 Sum_probs=15.9
Q ss_pred CccccccHHHHHHHHHHHHHH
Q 013616 142 ADVCLECWPLMTVAIKVIDTA 162 (439)
Q Consensus 142 ~~iC~kCw~~~~~a~klld~~ 162 (439)
..||..||..+..+.+.-...
T Consensus 49 ~~IC~~C~~~l~~~~~Fr~~c 69 (80)
T 1pzw_A 49 KVICNVCWTQVSEFHQFYVSI 69 (80)
T ss_dssp SEEEHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHH
Confidence 579999999988776655433
No 13
>3j21_R 50S ribosomal protein L21E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.94 E-value=26 Score=29.16 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=15.7
Q ss_pred ccccccccccccccccCccccCCCccEE
Q 013616 328 RLDMEVSKHRNHLLKAPFCVHPKTGRVC 355 (439)
Q Consensus 328 RLD~~VTkd~nHLLKsPfcvHpkTG~vc 355 (439)
.+|--|-|++=| =|.|++||+|+
T Consensus 44 k~~gsvqKGmPh-----k~yHGkTG~V~ 66 (97)
T 3j21_R 44 VIEPSYHKGMPD-----PRFHGRTGTVV 66 (97)
T ss_dssp CCCTTCCSSCCC-----GGGTTCEEEEE
T ss_pred EecCceEcCCCC-----cccCCCCeEEE
Confidence 355556666433 39999999985
No 14
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=20.78 E-value=1.4e+02 Score=25.71 Aligned_cols=57 Identities=23% Similarity=0.339 Sum_probs=33.7
Q ss_pred eEEEeccCCCCCCcccccCCC-ccccccHHHHHHHHHHHHHHHhhhcCCceeEEEEeCCCceEEEeechhhccCChHHHH
Q 013616 122 ELIFDIDITDYDDVRYCCSGA-DVCLECWPLMTVAIKVIDTALRDDFGFDHILWVYSGRRGVHCWVCDGKARRLTNEQRG 200 (439)
Q Consensus 122 ELVFDID~~dyd~ir~CC~~~-~iC~kCw~~~~~a~klld~~L~~dFGf~~i~~VFSGrRG~H~wV~D~~ar~L~~e~R~ 200 (439)
=++||||-|=+++ +. .|... ...+++.|. .|++. | +..++.|||-| ....
T Consensus 5 ~i~~DlDGTL~~~------~~~~i~~~----~~~~~~al~-~l~~~-G--~~iii~TgR~~---------------~~~~ 55 (142)
T 2obb_A 5 TIAVDFDGTIVEH------RYPRIGEE----IPFAVETLK-LLQQE-K--HRLILWSVREG---------------ELLD 55 (142)
T ss_dssp EEEECCBTTTBCS------CTTSCCCB----CTTHHHHHH-HHHHT-T--CEEEECCSCCH---------------HHHH
T ss_pred EEEEECcCCCCCC------CCcccccc----CHHHHHHHH-HHHHC-C--CEEEEEeCCCc---------------ccHH
Confidence 4689999873321 11 11111 112455555 44443 5 56778999987 5677
Q ss_pred HHHhHhh
Q 013616 201 AIADYFR 207 (439)
Q Consensus 201 aIvdYl~ 207 (439)
++++|+.
T Consensus 56 ~~~~~l~ 62 (142)
T 2obb_A 56 EAIEWCR 62 (142)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888876
No 15
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=20.64 E-value=47 Score=24.94 Aligned_cols=16 Identities=19% Similarity=0.299 Sum_probs=14.8
Q ss_pred ccCChHHHHHHHhHhh
Q 013616 192 RRLTNEQRGAIADYFR 207 (439)
Q Consensus 192 r~L~~e~R~aIvdYl~ 207 (439)
..||+++..+|+.||.
T Consensus 63 ~~Lsd~ei~~l~~Yi~ 78 (81)
T 1kx2_A 63 TDCTDEDYKAAIEFMS 78 (81)
T ss_dssp SSCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHH
Confidence 4899999999999997
No 16
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=20.17 E-value=51 Score=24.21 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=14.3
Q ss_pred cCChHHHHHHHhHhh
Q 013616 193 RLTNEQRGAIADYFR 207 (439)
Q Consensus 193 ~L~~e~R~aIvdYl~ 207 (439)
.|+++++.+|+.||.
T Consensus 65 ~ls~~ei~~l~~yl~ 79 (82)
T 1cch_A 65 PVTEEEAKILAEWVL 79 (82)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 799999999999997
Done!