Query 013617
Match_columns 439
No_of_seqs 446 out of 1195
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 13:55:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013617.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013617hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 2.7E-43 9.3E-48 335.5 26.9 397 6-432 25-434 (451)
2 3o7q_A L-fucose-proton symport 100.0 1.5E-42 5.1E-47 329.1 31.4 380 5-431 22-432 (438)
3 2gfp_A EMRD, multidrug resista 100.0 9.1E-40 3.1E-44 303.5 13.3 358 11-419 2-364 (375)
4 4gc0_A D-xylose-proton symport 100.0 4.4E-38 1.5E-42 302.9 21.0 411 8-436 11-467 (491)
5 4aps_A DI-OR tripeptide H+ sym 100.0 7.4E-36 2.5E-40 287.3 26.5 406 9-433 13-473 (491)
6 2cfq_A Lactose permease; trans 100.0 1.7E-34 5.8E-39 271.5 16.8 381 15-437 13-405 (417)
7 2xut_A Proton/peptide symporte 100.0 1.6E-30 5.6E-35 252.1 18.5 413 12-432 15-503 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.6 8E-15 2.8E-19 138.9 10.8 176 10-185 253-434 (451)
9 2cfq_A Lactose permease; trans 99.5 1.3E-14 4.5E-19 135.9 9.6 149 43-192 258-407 (417)
10 4aps_A DI-OR tripeptide H+ sym 99.5 4E-13 1.4E-17 128.7 17.8 175 236-431 13-196 (491)
11 3o7q_A L-fucose-proton symport 99.5 1.4E-12 4.9E-17 122.8 16.5 183 238-431 28-229 (438)
12 2xut_A Proton/peptide symporte 99.4 1.1E-12 3.8E-17 126.7 14.9 176 235-431 11-198 (524)
13 2gfp_A EMRD, multidrug resista 99.3 9.9E-13 3.4E-17 121.3 6.8 167 240-428 4-171 (375)
14 4gc0_A D-xylose-proton symport 99.3 9.7E-12 3.3E-16 119.1 13.1 178 14-192 282-470 (491)
15 3mkt_A Multi antimicrobial ext 67.0 75 0.0026 28.9 25.6 32 116-147 142-173 (460)
16 2jln_A MHP1; hydantoin, transp 54.8 1.4E+02 0.0047 27.9 14.6 52 127-178 20-73 (501)
17 2g9p_A Antimicrobial peptide l 46.6 2.7 9.1E-05 19.7 -0.6 13 64-76 3-15 (26)
18 2l2t_A Receptor tyrosine-prote 24.7 89 0.0031 17.8 3.1 13 423-435 26-38 (44)
19 2dw3_A Intrinsic membrane prot 24.3 1.1E+02 0.0038 19.7 3.8 30 163-192 32-61 (77)
20 2ks1_B Epidermal growth factor 23.9 93 0.0032 17.7 3.1 14 422-435 26-39 (44)
21 3d9s_A Aquaporin-5, AQP-5; aqu 20.9 1.2E+02 0.0042 25.4 4.8 22 163-184 203-224 (266)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=2.7e-43 Score=335.51 Aligned_cols=397 Identities=17% Similarity=0.226 Sum_probs=316.0
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHH
Q 013617 6 KRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWS 85 (439)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 85 (439)
+++..+..++++.+...++...+.+..|.+.+|+ .+..+.|++.+++.++..++++++|+++||+|||+++.++.++.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHH
Confidence 3467788888999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcC----CcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhccc
Q 013617 86 STCFWLKL----DPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYN 161 (439)
Q Consensus 86 ~~~~~~~~----~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 161 (439)
++.+++++ ++ |++.++++|+++|++.+...+...+++.|++|+|+|++++++.+.+..+|..++|.+++.+.+..
T Consensus 104 ~~~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 182 (451)
T 1pw4_A 104 AVMLFMGFVPWATS-SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 182 (451)
T ss_dssp HHHHHHHHCHHHHS-SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhccc-cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999 86 99999999999999999999999999999999999999999999999999999999999988888
Q ss_pred C-CchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHH
Q 013617 162 G-PNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWA 240 (439)
Q Consensus 162 ~-wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (439)
| ||+.|++.+++.++..++.++..||+|++...+.+++...+.. + .. +++.+++........++.+|+|.++.
T Consensus 183 g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (451)
T 1pw4_A 183 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYP-D-DY----NEKAEQELTAKQIFMQYVLPNKLLWY 256 (451)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------------CCTHHHHHHTSSCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhccccc-c-cc----hhhhhcccccccchHHHHHcCHHHHH
Confidence 8 9999999999888877777777788776543221111111000 0 00 00000011111112467889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHh--hhccccchhhhhHHHHHHH
Q 013617 241 IVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHL--ITKRILSVTRTRKFLNTVG 318 (439)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~~~~~~ 318 (439)
..+..++.......+..+.|.|+++.+|+++.+.+.+.....++.+++.++.+++.||+ ++|+ ....+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~----------~~~~~ 326 (451)
T 1pw4_A 257 IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG----------ATGVF 326 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH----------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch----------hHHHH
Confidence 99999999999999999999999998899999999999999999999999999999999 7777 55555
Q ss_pred HHHHH-HHHhhhcccC--ChhHHHHH-HHHHHHhhhcccccccccc-cccCCChhhHHHHHHHHHhhh-hHHHHHHHHHH
Q 013617 319 FMVAS-IALMALPIFR--SSNGAIFC-SSIALGFLALGRAGFAVNH-MDIAPRYAGIVMGISNTAGTL-AGIVGVDMTGK 392 (439)
Q Consensus 319 ~~~~~-~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~-g~~i~~~~~g~ 392 (439)
..+.. ++++.+...+ +.+..... .+.+.+..... +...... +..++++|+++.|+.+...++ |..++|.+.|.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~ 405 (451)
T 1pw4_A 327 FMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPV-MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 405 (451)
T ss_dssp HHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHH-HHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchH-HHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444 5555555543 22222222 22222222222 2333344 445557899999999999999 99999999999
Q ss_pred hhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhc
Q 013617 393 LLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFS 432 (439)
Q Consensus 393 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (439)
+.|.. +++..|++.+++.+++.++.+...
T Consensus 406 l~~~~-----------g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 406 TVDFF-----------GWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHSS-----------CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhc-----------CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988 799999998888888877766654
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=1.5e-42 Score=329.12 Aligned_cols=380 Identities=13% Similarity=0.070 Sum_probs=309.6
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHH
Q 013617 5 PKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLW 84 (439)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 84 (439)
++++..+..+++..+..+++....++..|.+.+++|.++.+.|++.+.+.+++.++.+++|+++||+|||+++.++.++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence 45566777888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhh---cCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhh-cc
Q 013617 85 SSTCFWL---KLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLV-KY 160 (439)
Q Consensus 85 ~~~~~~~---~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~ 160 (439)
+++.+++ ++++ +++.++++|+++|++.+...+...++++|++|+|+|++++++.+.+.++|..+++.+++.+. +.
T Consensus 102 ~~~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 102 ALGAALFWPAAEIM-NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred HHHHHHHHhccccc-cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999 8887 99999999999999999999999999999999999999999999999999999999999998 55
Q ss_pred cC-------------------------CchhHHHHhHHHHHHHHHHhhh-ccCCCCCCCCCCCcccccCccCcccchhhh
Q 013617 161 NG-------------------------PNSVFNAEAALGGMWSLLWFKY-ATDPPRSEHPKASAAGFGESLLPMRDQKVK 214 (439)
Q Consensus 161 ~~-------------------------wr~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (439)
.+ ||+.|++.+.+.++..++.++. .||++++++++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~------------------- 241 (438)
T 3o7q_A 181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSD------------------- 241 (438)
T ss_dssp SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCC-------------------
T ss_pred cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccc-------------------
Confidence 54 9999988887776655544432 23322211000
Q ss_pred hccccccccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCCcccccchhhhhhHHHHHHHHHHHH
Q 013617 215 VDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTY-FELGLQLSLQEMGSSKMMPYLNMFIFSNIGG 293 (439)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 293 (439)
+++++...++++++|+|.++...+..++..........+.|.| +++.+|+++.+++.......++.+++.++.+
T Consensus 242 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 316 (438)
T 3o7q_A 242 -----AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGT 316 (438)
T ss_dssp -----SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----ccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 1112234566889999999999999999999899999999999 8887899999999999999999999999999
Q ss_pred HHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHhhhcccccccccccccCCChhhHHHH
Q 013617 294 VVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMG 373 (439)
Q Consensus 294 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 373 (439)
++.||+++|+ .+..+.++..++.+.....++........+.+.+..... +.......+..|++++.+.+
T Consensus 317 ~l~~r~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 385 (438)
T 3o7q_A 317 WLISRFAPHK----------VLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQY-PTIFSLGIKNLGQDTKYGSS 385 (438)
T ss_dssp HHHHHSCHHH----------HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHH-HHHHHHHHSSCGGGHHHHHH
T ss_pred HHHHHhcchH----------HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH-HHHHHHHHhhccccccchhh
Confidence 9999999998 777777777777777776655544444444444433333 44444434444445888888
Q ss_pred HHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Q 013617 374 ISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLF 431 (439)
Q Consensus 374 ~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (439)
+.. ...+++.++|.+.|.+.|.. ++++..|.+.+++.++..+..+..
T Consensus 386 ~~~-~~~~g~~~~~~~~g~l~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T 3o7q_A 386 FIV-MTIIGGGIVTPVMGFVSDAA----------GNIPTAELIPALCFAVIFIFARFR 432 (438)
T ss_dssp HHH-HTTHHHHHHHHHHHHHHHHH----------TSSGGGGHHHHHHHHHHHHHHTTC
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHh----------cchHHHHHHHHHHHHHHHHHHHHH
Confidence 777 77899999999999999998 238888887766655554443333
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=9.1e-40 Score=303.51 Aligned_cols=358 Identities=12% Similarity=0.084 Sum_probs=289.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhh
Q 013617 11 VILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFW 90 (439)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~ 90 (439)
+..+++..++..++...+.+..|.+.+++|.|+++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 2 LLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 34567778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHH
Q 013617 91 LKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAE 170 (439)
Q Consensus 91 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~ 170 (439)
+++++ |++.+++.|+++|++.+...+...+++.|++|+|+|++++++.+....+|..++|.+++.+.+..+||+.|++.
T Consensus 82 ~~~~~-~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 160 (375)
T 2gfp_A 82 AVTTS-SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL 160 (375)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHhc-cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence 99997 99999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred hHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHHH
Q 013617 171 AALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHY 250 (439)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (439)
+++.++..+...+..||++++++++ ++..+++++.+|+|+++...+..++...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (375)
T 2gfp_A 161 LVLCAGVTFSMARWMPETRPVDAPR---------------------------TRLLTSYKTLFGNSGFNCYLLMLIGGLA 213 (375)
T ss_dssp HHHHHHHHCCCCCSSCCCSTTTCCC---------------------------CCTTTCSTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcccCCCCccc---------------------------ccHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 8888777665556666665443111 1123345678899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHh--h
Q 013617 251 ALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALM--A 328 (439)
Q Consensus 251 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 328 (439)
....+..+.|.|+++.+|.++.+.+.+.....++.+++..+.+++.||.+++. ...... ....+.. .
T Consensus 214 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~----------~~~~~~-~~~~~~~~~~ 282 (375)
T 2gfp_A 214 GIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM----------WQSVIC-CLLAGLLMWI 282 (375)
T ss_dssp HHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH----------HHHHHH-HHHTSSSSSH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH-HHHHHHHHHH
Confidence 99999999999999988999999999999999999999999999999887632 222211 1222222 1
Q ss_pred hccc--CChhHHHHH-HHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCC
Q 013617 329 LPIF--RSSNGAIFC-SSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLS 405 (439)
Q Consensus 329 ~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~ 405 (439)
.... ++.+..... .+.+.+. +...+.......+..||+|+++.|+.+...++|..++|.+.|.+.+..
T Consensus 283 ~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-------- 353 (375)
T 2gfp_A 283 PDWFGVMNVWTLLVPAALFFFGA-GMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTG-------- 353 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH--------
T ss_pred HhhhccccHHHHHHHHHHHHHHH-HHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCC--------
Confidence 1111 122222222 2233333 334455555555655689999999999999999999999999998765
Q ss_pred CcccchhHHHHHHH
Q 013617 406 SPESWRAVFFIPGL 419 (439)
Q Consensus 406 ~~~~~~~~~~~~~~ 419 (439)
++...+.+.++
T Consensus 354 ---~~~~~~~~~~~ 364 (375)
T 2gfp_A 354 ---QGSLGLLMTLM 364 (375)
T ss_dssp ---HHHHHHHHHHH
T ss_pred ---cccHHHHHHHH
Confidence 67777666433
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=4.4e-38 Score=302.89 Aligned_cols=411 Identities=14% Similarity=0.110 Sum_probs=286.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCC--------ccchhhhhhhhhhhhhhhcccccccccccCchHHHHH
Q 013617 8 YLIVILTFISTCVCYIERVGFSIAYTAAADAAGVN--------QSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLF 79 (439)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s--------~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~ 79 (439)
+.+....+++.++.++|...++.++|.+.++++.+ ..+.|++.+++.+|..++++++|+++||+|||+++.+
T Consensus 11 ~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~ 90 (491)
T 4gc0_A 11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKI 90 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 44445567788999999999999999999888542 3457899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcC------------------CcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhh
Q 013617 80 SFVLWSSTCFWLKL------------------DPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTS 141 (439)
Q Consensus 80 ~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 141 (439)
+.+++.++++++++ ++ |+++++++|+++|++.|...+....+++|+.|+++|++..++.+.
T Consensus 91 ~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~-~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~ 169 (491)
T 4gc0_A 91 AAVLFFISGVGSAWPELGFTSINPDNTVPVYLAG-YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQF 169 (491)
T ss_dssp HHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGG-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhh
Confidence 99999999999884 65 899999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhhhhhhhcc--------cCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchh-
Q 013617 142 GMYLGAAMGMLFLPSLVKY--------NGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQK- 212 (439)
Q Consensus 142 ~~~~g~~~g~~~~~~l~~~--------~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 212 (439)
+..+|..+++.++..+... .+||..+.+..+..++.. ...+..||+|++...+.+.++..+...+...+.
T Consensus 170 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~ 248 (491)
T 4gc0_A 170 AIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFL-MLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTL 248 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHH-HHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhh-hhhhcCCCChHHHHHcCchhHHHHhHHHhcCCch
Confidence 9999999999888776542 347777776666655544 444577999988755555444332111111000
Q ss_pred ----hhhccccccccccCchHHhhhcchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHH
Q 013617 213 ----VKVDNGGSAMKAAKIPWKRIVVNLPVWAI-VVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFI 287 (439)
Q Consensus 213 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 287 (439)
..+.++..+.++.........+.++.... ....+.+....+.+..+.|.+.++ .+.+..+........++..++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 327 (491)
T 4gc0_A 249 ATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-LGASTDIALLQTIIVGVINLT 327 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-cCCCccchhhHHHHHHHHHHH
Confidence 00000000011111111233334444433 333344445556666777777666 677777777777788899999
Q ss_pred HHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcc---cC-ChhHHHHHHHH-HHHhhhcccccccccccc
Q 013617 288 FSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPI---FR-SSNGAIFCSSI-ALGFLALGRAGFAVNHMD 362 (439)
Q Consensus 288 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 362 (439)
+.++.+++.||+|||+ ....+.....++++.+.. .. .....+...++ ..++.....+....+..|
T Consensus 328 ~~~~~~~l~dr~Grr~----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E 397 (491)
T 4gc0_A 328 FTVLAIMTVDKFGRKP----------LQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSE 397 (491)
T ss_dssp HHHHHHHHHHHHCSHH----------HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCcc----------hhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999998 666565555555444332 11 22222222222 222333333445567777
Q ss_pred cCC-ChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhccCCc
Q 013617 363 IAP-RYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTGER 436 (439)
Q Consensus 363 ~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (439)
..| +.|+++.|+.+..+++++.+++.+.+.+.+...... ..+....|++.+++++++.++.+++.+|+|
T Consensus 398 ~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~-----~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 398 IFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA-----HFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp SSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH-----HHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred hCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 776 789999999999999999999998887765321000 013456788888888888877766655543
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=7.4e-36 Score=287.30 Aligned_cols=406 Identities=14% Similarity=0.118 Sum_probs=278.4
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHH-HHHh-----hCCCccchhhhhhhhhhhhhhhcccccccccc-cCchHHHHHHH
Q 013617 9 LIVILTFISTCVCYIERVGFSIAYTA-AADA-----AGVNQSSKGTILSTFYYGYACSQVPGGWAAQK-IGGRKVLLFSF 81 (439)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~-----~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~ 81 (439)
..+..++...+...+......+..+. +.++ +|.+..+.+++.+.+.++..++++++|+++|| +|||+++..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~ 92 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGG 92 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 34455555666666666555555554 4444 99999999999999999999999999999999 89999999999
Q ss_pred HHHHHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcc--cchhhHHHhhhhhHHHHHHhhhhhhhhc
Q 013617 82 VLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHE--RSRSVSLTTSGMYLGAAMGMLFLPSLVK 159 (439)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 159 (439)
++.+++.+++++++ |++.++++|+++|++.+...+...++++|++|+++ |++++++.+.+.++|..++|.+++.+.+
T Consensus 93 ~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 171 (491)
T 4aps_A 93 VLIMLGHIVLALPF-GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE 171 (491)
T ss_dssp HHHHHHHHHHHSCC-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999997 99999999999999999999999999999999988 7778888999999999999999999999
Q ss_pred ccCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccch--------------hhhhcccc-c----
Q 013617 160 YNGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQ--------------KVKVDNGG-S---- 220 (439)
Q Consensus 160 ~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~-~---- 220 (439)
..|||+.|++.++..++..+...+..|+..+++.++.+.++..++..+..+. ....+..+ +
T Consensus 172 ~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 251 (491)
T 4aps_A 172 AAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYIN 251 (491)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchh
Confidence 9999999999887776655555444333222211111100000000000000 00000000 0
Q ss_pred ----------------cccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHH
Q 013617 221 ----------------AMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLN 284 (439)
Q Consensus 221 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 284 (439)
..++...+..+..+....+...+..+.....+.....++|.|.++..+.+..+.+.......+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (491)
T 4aps_A 252 LLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLF 331 (491)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHH
Confidence 0000011101111223345555556666666677778899999988888878888999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccC---------ChhHHHH-HHHHHHHhhhcccc
Q 013617 285 MFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFR---------SSNGAIF-CSSIALGFLALGRA 354 (439)
Q Consensus 285 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~~~~~~~~ 354 (439)
.+++.++.+++.||++||+. .+...+..+..+.++++..+.... +...... ..+.+.+..... +
T Consensus 332 ~~~~~~~~~~l~~r~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~-~ 405 (491)
T 4aps_A 332 IMLYTPFFAWLWTAWKKNQP-----SSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLIS-P 405 (491)
T ss_dssp HHHHHHHHHHHHHHTTTC--------CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTT-T
T ss_pred HHHHHHHHHHHHHHHhccCC-----CchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHh-H
Confidence 99999999999999999861 112234466666666666554421 2222222 223333333333 3
Q ss_pred cccccccc-cCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhcc
Q 013617 355 GFAVNHMD-IAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFST 433 (439)
Q Consensus 355 ~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (439)
.......+ .|++.|+++.|+.+...++|..++|.+.+.+.+. ++...|.+.+++++++.+..+...+
T Consensus 406 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 406 VGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK------------SEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp HHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS------------STTHHHHHTHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------------cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 5557899999999999999999999999887764 4667787777777777666655443
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=100.00 E-value=1.7e-34 Score=271.45 Aligned_cols=381 Identities=13% Similarity=0.116 Sum_probs=254.6
Q ss_pred HHHHHHHHHhhhhhHHHHHH-HHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHh---h
Q 013617 15 FISTCVCYIERVGFSIAYTA-AADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCF---W 90 (439)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~---~ 90 (439)
....+..........+.+|. +.+++|.|+.+.|++.+.+.+++.++++++|+++||+|||+++.++..+.+++.. .
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~ 92 (417)
T 2cfq_A 13 GLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFI 92 (417)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555566666 4566999999999999999999999999999999999999999998887655321 1
Q ss_pred hcCCcchH-HHHHHHHHHHhhhcccchhhHHHHhhhccCC--cccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhH
Q 013617 91 LKLDPNNV-FILVVARLLVGVSQGFIFPSIHTVLAQWVPP--HERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVF 167 (439)
Q Consensus 91 ~~~~~~~~-~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f 167 (439)
+.+++ .. ..+...+.+.|++.+...+.....+.++.++ ++|+...+.......+|..++|.+++.+.+ .+||+.|
T Consensus 93 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f 170 (417)
T 2cfq_A 93 FIFGP-LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVF 170 (417)
T ss_dssp HTHHH-HHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHH
Confidence 12222 11 1234556666666555444444444444432 456778888888899999999999999887 6899999
Q ss_pred HHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHH
Q 013617 168 NAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFT 247 (439)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (439)
++.++..++..+..++..||++++. ++ ++..+ +++++....++++++|+|+++...+..+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (417)
T 2cfq_A 171 WLGSGCALILAVLLFFAKTDAPSSA-TV---ANAVG---------------ANHSAFSLKLALELFRQPKLWFLSLYVIG 231 (417)
T ss_dssp TTTTTTTTTHHHHSCSSCCCCSCSS-CS---SSSSS---------------SCCCCCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccccccc-cc---ccccc---------------cccccccHHHHHHHhcCCchhhHHHHHHH
Confidence 9887775554444433333332211 00 00000 00011112345678899999887776666
Q ss_pred HHHHHHHHHHHHHHHHHHhhCC---cccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHH
Q 013617 248 FHYALYVLMNWLPTYFELGLQL---SLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASI 324 (439)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
....+..+..++|.|+++.++. +..+.+.......++.+++.++.+++.||+++|+ .+..+..+.++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~----------~l~~~~~~~~~ 301 (417)
T 2cfq_A 232 VSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN----------ALLLAGTIMSV 301 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH----------HHHHHHHHHHH
Confidence 6666666777889998775542 2344566677777888899999999999999998 66677777777
Q ss_pred HHhhhcccCChhHHHHHHHHHHHhhhcccccccccccccCC-ChhhHHHHHH-HHHhhhhHHHHHHHHHHhhcccccccc
Q 013617 325 ALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDIAP-RYAGIVMGIS-NTAGTLAGIVGVDMTGKLLEAAKTTYS 402 (439)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~-~~~~~~g~~i~~~~~g~l~~~~~~~~~ 402 (439)
..+.+...++.........+.........+....+..|..| +.|+++.+.. +...++|+.++|.+.|.+.|..
T Consensus 302 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~----- 376 (417)
T 2cfq_A 302 RIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI----- 376 (417)
T ss_dssp HHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-----
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-----
Confidence 66666555444433322222111111111222345555544 7899999994 8888899999999999999977
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHHHhccCCcc
Q 013617 403 DLSSPESWRAVFFIPGLLCILSSFVFLLFSTGERI 437 (439)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (439)
+++..|.+.+++.+++.++.+...+++|.
T Consensus 377 ------g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 377 ------GFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred ------CcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 78889999888888887776665554443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=1.6e-30 Score=252.09 Aligned_cols=413 Identities=13% Similarity=0.091 Sum_probs=241.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHH-HHHhhC------CCccchhhhhhhhhhhhhhhccccccccccc-CchHHHHHHHHH
Q 013617 12 ILTFISTCVCYIERVGFSIAYTA-AADAAG------VNQSSKGTILSTFYYGYACSQVPGGWAAQKI-GGRKVLLFSFVL 83 (439)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~------~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~ 83 (439)
..+.+..++..+......+.++. +.+++| .+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~ 94 (524)
T 2xut_A 15 PYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLI 94 (524)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 34455556666666555566655 667899 9999999999999999999999999999999 999999999999
Q ss_pred HHHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHH---HhhhhhHHHHHHhhhhhhhhcc
Q 013617 84 WSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSL---TTSGMYLGAAMGMLFLPSLVKY 160 (439)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~g~~~~~~l~~~ 160 (439)
.+++.+++++++.+++.+++.|+++|++.+...+...+++.|++|+++|++..+. .+...++|..++|.+++.+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (524)
T 2xut_A 95 YCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN 174 (524)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999998832799999999999999999999999999999999999876666 8999999999999999999988
Q ss_pred cCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccC-------ccCcccchhh--h-----------hcc-cc
Q 013617 161 NGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGE-------SLLPMRDQKV--K-----------VDN-GG 219 (439)
Q Consensus 161 ~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~--~-----------~~~-~~ 219 (439)
.+||+.|++.+++.++..+..++..++.++++.++.+..+..+ +.....+... . ... .+
T Consensus 175 ~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (524)
T 2xut_A 175 FGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPT 254 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccch
Confidence 9999999998887766555444333322211111000000000 0000000000 0 000 00
Q ss_pred -------------ccccccCchHH------------hhhcchhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhCCcc
Q 013617 220 -------------SAMKAAKIPWK------------RIVVNLPVWAIVVNNF---TFHYALYVLMNWLPTYFELGLQLSL 271 (439)
Q Consensus 220 -------------~~~~~~~~~~~------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~ 271 (439)
..+++...+++ +..+.++.+....... .....+......++.+..+ .+.+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 333 (524)
T 2xut_A 255 LGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQAND-MVKPQ 333 (524)
T ss_dssp TCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHH-SCCCS
T ss_pred hhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHh-cCCCe
Confidence 00000000110 0111222222111111 1111111112223333332 22221
Q ss_pred -cccchhhhhhHHHHHHHHHHHHHHH----HHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccC---------ChhH
Q 013617 272 -QEMGSSKMMPYLNMFIFSNIGGVVA----DHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFR---------SSNG 337 (439)
Q Consensus 272 -~~~~~~~~~~~~~~~~~~~~~g~l~----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 337 (439)
...+.+.....+..++...+.+++. ||.++|. .++..+..+.++.+++++.+.... +.+.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (524)
T 2xut_A 334 WFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKL------TALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFW 407 (524)
T ss_dssp SSCHHHHHTTSGGGHHHHGGGTTTC------------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHH
T ss_pred eecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCC------ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHH
Confidence 1345555555566666666665543 3333221 111245566666666666655431 2222
Q ss_pred HH-HHHHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccc-hhHHH
Q 013617 338 AI-FCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESW-RAVFF 415 (439)
Q Consensus 338 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~-~~~~~ 415 (439)
.. ...+.+.+.....+.......+..|+++|++++|+.+...++|+.++|.+.|.+.+..+.+..+.+ ..+. ...|+
T Consensus 408 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~ 486 (524)
T 2xut_A 408 QILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQT-GMSVTAFQMF 486 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHH-HSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc-cccccccHHH
Confidence 22 233333333333333344444455668999999999999999999999999999874310000000 0011 23366
Q ss_pred HHHHHHHHHHHHHHHhc
Q 013617 416 IPGLLCILSSFVFLLFS 432 (439)
Q Consensus 416 ~~~~~~~~~~~~~~~~~ 432 (439)
+.+++.+++.++.+...
T Consensus 487 ~~~~~~~~~~~~~~~~~ 503 (524)
T 2xut_A 487 FFAGFAILAAIVFALYA 503 (524)
T ss_dssp HHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777666655543
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.56 E-value=8e-15 Score=138.89 Aligned_cols=176 Identities=14% Similarity=0.108 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHh-hCCCccchhhhhhhhhhhhhhhccccccccccc--CchHHHHHHHHHHH-
Q 013617 10 IVILTFISTCVCYIERVGFSIAYTAAADA-AGVNQSSKGTILSTFYYGYACSQVPGGWAAQKI--GGRKVLLFSFVLWS- 85 (439)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~l~~~~~~~~- 85 (439)
.+....+..++............|.+.++ +|.++.+.+++.+...++..++.++.|++.||+ |||+.+..+..+..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~ 332 (451)
T 1pw4_A 253 LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT 332 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 34455556666666666777788887766 899999999999999999999999999999999 99999988877766
Q ss_pred HHHhhhcCCcc-hHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhH-HHHHHhhhhhhhhcccCC
Q 013617 86 STCFWLKLDPN-NVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYL-GAAMGMLFLPSLVKYNGP 163 (439)
Q Consensus 86 ~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~~w 163 (439)
++.++..+.++ +.+.+.+.-++.|++.+...+....++.|.+|+++|++++++.+....+ |..++|.+.+.+.+..||
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~ 412 (451)
T 1pw4_A 333 IATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW 412 (451)
T ss_dssp HHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 77777777642 6788888889999998888899999999999999999999999999999 999999999999999999
Q ss_pred chhHHHHhHHHHHHHHHHhhhc
Q 013617 164 NSVFNAEAALGGMWSLLWFKYA 185 (439)
Q Consensus 164 r~~f~~~~~~~~~~~~~~~~~~ 185 (439)
+..|++.+++.++..++.++..
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 413 DGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888877666555443
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.54 E-value=1.3e-14 Score=135.87 Aligned_cols=149 Identities=10% Similarity=0.016 Sum_probs=126.0
Q ss_pred ccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHH
Q 013617 43 QSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTV 122 (439)
Q Consensus 43 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 122 (439)
..+.++..+...++..++.++.|+++||+|||+++..+..+.+++..+.++.+ +.+.+++...+.+++.+...+....+
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT-SALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC-SHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888889999999999999999999999988888888888886 78888888888888877777778899
Q ss_pred hhhccCCcccchhhHH-HhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHHHHHHhhhccCCCCCC
Q 013617 123 LAQWVPPHERSRSVSL-TTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWFKYATDPPRSE 192 (439)
Q Consensus 123 i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (439)
++|.+|++.|+++.+. .+....+|..++|.+++.+.+..|++..|.+.+++.++..++.++..||+++.+
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 9999999999999998 488889999999999999998888999999888888777666665666544443
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.51 E-value=4e-13 Score=128.70 Aligned_cols=175 Identities=13% Similarity=0.106 Sum_probs=141.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hCCcccccchhhhhhHHHHHHHHHHHHHHHHH-hhhccccchhh
Q 013617 236 LPVWAIVVNNFTFHYALYVLMNWLPTYFELG-----LQLSLQEMGSSKMMPYLNMFIFSNIGGVVADH-LITKRILSVTR 309 (439)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~ 309 (439)
|.++......++....++....+++.|+++. +|.+..+.+++.+...++..++.++.|+++|| +|||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~------ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP------ 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH------
Confidence 4567777788888888999999999999998 89999999999999999999999999999999 89999
Q ss_pred hhHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHhhhcccccccccccc-cCCCh--hhHHHHHHHHHhhhhHHHH
Q 013617 310 TRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMD-IAPRY--AGIVMGISNTAGTLAGIVG 386 (439)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~g~~~~~~~~g~~i~ 386 (439)
.+..+.++..++.+.....++.+......++.....+...+.......| .++++ |+.+.++.+...++|..++
T Consensus 87 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 162 (491)
T 4aps_A 87 ----AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIA 162 (491)
T ss_dssp ----HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHH
Confidence 8888888888888888887776655554444333333333444555555 45566 8888998999999999999
Q ss_pred HHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Q 013617 387 VDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLF 431 (439)
Q Consensus 387 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (439)
|.+.+.+.+.. +|+..|++.++..+++.+.....
T Consensus 163 ~~~~~~l~~~~-----------g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 163 PLIVGAAQEAA-----------GYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHS-----------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhh-----------hHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999987 89999999888777776666544
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.45 E-value=1.4e-12 Score=122.85 Aligned_cols=183 Identities=13% Similarity=0.097 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHH
Q 013617 238 VWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTV 317 (439)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 317 (439)
+....+..+.............|.+.++ +|.+..+.+++.+...++..++.++.|+++||+|||+ .+..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~----------~l~~ 96 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQA-FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA----------GIIT 96 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHH----------HHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchH----------HHHH
Confidence 3445555566666666777778876555 9999999999999999999999999999999999999 8888
Q ss_pred HHHHHHHHHhhh---cccCChhHHHHHHHHHHHhhhccccccccccccc-CCChhhHHHHHHHHHhhhhHHHHHHHHHHh
Q 013617 318 GFMVASIALMAL---PIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDI-APRYAGIVMGISNTAGTLAGIVGVDMTGKL 393 (439)
Q Consensus 318 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l 393 (439)
+.++.+++.++. ...++.+..+...++.....+...+....+..|. ++|+|+++.++.+....+|..++|.+.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 176 (438)
T 3o7q_A 97 GLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888777 6666666555544443333333334444555554 558999999999999999999999999999
Q ss_pred h-cccccccc------C--------CCCcccchhHHHHHHHHHHHHHHHHHHh
Q 013617 394 L-EAAKTTYS------D--------LSSPESWRAVFFIPGLLCILSSFVFLLF 431 (439)
Q Consensus 394 ~-~~~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (439)
. +..+.... + .....+|+..|.+.++..++..+..+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 229 (438)
T 3o7q_A 177 ILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT 229 (438)
T ss_dssp HHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 54410000 0 0000018888887777766665555544
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.44 E-value=1.1e-12 Score=126.73 Aligned_cols=176 Identities=15% Similarity=0.076 Sum_probs=136.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC------CcccccchhhhhhHHHHHHHHHHHHHHHHHh-hhccccch
Q 013617 235 NLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQ------LSLQEMGSSKMMPYLNMFIFSNIGGVVADHL-ITKRILSV 307 (439)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~ 307 (439)
+|.++...+..++....++....+++.|+++.+| .++.+.+++.+...++..++.++.|+++||+ |||+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~---- 86 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN---- 86 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH----
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH----
Confidence 3556777788888888889999999999998889 9999999999999999999999999999999 9998
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhcccC-ChhHHHHHHHHHHHhhhcccccccccccc-cCCChhhHHHHH---HHHHhhhh
Q 013617 308 TRTRKFLNTVGFMVASIALMALPIFR-SSNGAIFCSSIALGFLALGRAGFAVNHMD-IAPRYAGIVMGI---SNTAGTLA 382 (439)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~---~~~~~~~g 382 (439)
.+..+.++..++.++....+ +.+......++.....+...+.......+ .++++|++..+. .+...++|
T Consensus 87 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g 160 (524)
T 2xut_A 87 ------TILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFG 160 (524)
T ss_dssp ------HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHH
Confidence 78888888888887777776 55544444333332333333444444455 455788766655 89999999
Q ss_pred HHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Q 013617 383 GIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLF 431 (439)
Q Consensus 383 ~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (439)
..++|.+.+.+.+.. +|+..|.+.++..+++.+..+..
T Consensus 161 ~~~g~~~~~~l~~~~-----------g~~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 161 SFFASLSMPLLLKNF-----------GAAVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp HHHHHHTSTHHHHTS-----------CHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhccc-----------cHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999876 89999998888877766665443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.34 E-value=9.9e-13 Score=121.33 Aligned_cols=167 Identities=14% Similarity=0.058 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHH
Q 013617 240 AIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGF 319 (439)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 319 (439)
...+..++.......+...+|.+.++ +|.|+.+.+++.+...++..++.++.|+++||+|||+ .+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~----------~~~~~~ 72 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARD-LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRP----------VILVGM 72 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCC----------CCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch----------hHHHHH
Confidence 44555666677777777788877655 8999999999999999999999999999999999999 777777
Q ss_pred HHHHHHHhhhcccCChhHHHHHHHHHHHhhhcccccccccccc-cCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhcccc
Q 013617 320 MVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMD-IAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAK 398 (439)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~ 398 (439)
.+..++.......++.+.......+.....+...+.......| .++|+|+++.+..+....+|..++|.+.+.+.+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~- 151 (375)
T 2gfp_A 73 SIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW- 151 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc-
Confidence 7777777777666555544444333333333333444444455 45689999999999999999999999999999877
Q ss_pred ccccCCCCcccchhHHHHHHHHHHHHHHHH
Q 013617 399 TTYSDLSSPESWRAVFFIPGLLCILSSFVF 428 (439)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (439)
+|+..+.+.++..++..+..
T Consensus 152 ----------~~~~~~~~~~~~~~~~~~~~ 171 (375)
T 2gfp_A 152 ----------NWRACYLFLLVLCAGVTFSM 171 (375)
T ss_dssp ----------HHHHHHHHHHHHHHHHHCCC
T ss_pred ----------cHHHHHHHHHHHHHHHHHHH
Confidence 89999998888777665533
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.32 E-value=9.7e-12 Score=119.05 Aligned_cols=178 Identities=10% Similarity=0.072 Sum_probs=130.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcC
Q 013617 14 TFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKL 93 (439)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~ 93 (439)
.....+........+....|.+.++.+.+..+.........+...++.++.+.+.||+|||+.++.+.....++.+..+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~ 361 (491)
T 4gc0_A 282 VMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGT 361 (491)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHH
Confidence 33334444444455566677788888888777777777888889999999999999999999999888777766655432
Q ss_pred C----cchHHHHH-HHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhc------ccC
Q 013617 94 D----PNNVFILV-VARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVK------YNG 162 (439)
Q Consensus 94 ~----~~~~~~l~-~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~------~~~ 162 (439)
. .++...+. ..-+..+++.+ ..+....+.+|.+|.+.|++++|+......+|..+++.+.+.+.+ ..+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~ 440 (491)
T 4gc0_A 362 AFYTQAPGIVALLSMLFYVAAFAMS-WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFH 440 (491)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHT
T ss_pred HHhcccchHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 2 11222222 22222333333 457888999999999999999999999999999998887766543 356
Q ss_pred CchhHHHHhHHHHHHHHHHhhhccCCCCCC
Q 013617 163 PNSVFNAEAALGGMWSLLWFKYATDPPRSE 192 (439)
Q Consensus 163 wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (439)
+...|++.++++++..+..+++.||++.+.
T Consensus 441 ~~~~~~i~~~~~~~~~i~~~~~~PETkg~t 470 (491)
T 4gc0_A 441 NGFSYWIYGCMGVLAALFMWKFVPETKGKT 470 (491)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHCCCCTTCC
T ss_pred hhHHHHHHHHHHHHHHHHHHheecCCCCCC
Confidence 778899999999988888888999876543
No 15
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=67.05 E-value=75 Score=28.88 Aligned_cols=32 Identities=6% Similarity=-0.114 Sum_probs=18.8
Q ss_pred hhhHHHHhhhccCCcccchhhHHHhhhhhHHH
Q 013617 116 FPSIHTVLAQWVPPHERSRSVSLTTSGMYLGA 147 (439)
Q Consensus 116 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~ 147 (439)
..............++|.+.....+....+-.
T Consensus 142 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (460)
T 3mkt_A 142 AYLLFQALRSFTDGMSLTKPAMVIGFIGLLLN 173 (460)
T ss_dssp HHHHHHHHTTTTCTTSCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 33444555666667777777766665544433
No 16
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=54.84 E-value=1.4e+02 Score=27.90 Aligned_cols=52 Identities=15% Similarity=-0.024 Sum_probs=25.5
Q ss_pred cCCccc-chhhHHHhhhhhHHHHHHhh-hhhhhhcccCCchhHHHHhHHHHHHH
Q 013617 127 VPPHER-SRSVSLTTSGMYLGAAMGML-FLPSLVKYNGPNSVFNAEAALGGMWS 178 (439)
Q Consensus 127 ~~~~~r-~~~~~~~~~~~~~g~~~g~~-~~~~l~~~~~wr~~f~~~~~~~~~~~ 178 (439)
.|+++| .+...+.....+....++.. +++.+....+|+..++...+-.++..
T Consensus 20 vp~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~ 73 (501)
T 2jln_A 20 TRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAV 73 (501)
T ss_dssp CCGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred CChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHH
Confidence 466666 45555554444444433333 33333334566666655444444433
No 17
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=46.55 E-value=2.7 Score=19.72 Aligned_cols=13 Identities=23% Similarity=0.325 Sum_probs=10.2
Q ss_pred ccccccccCchHH
Q 013617 64 GGWAAQKIGGRKV 76 (439)
Q Consensus 64 ~g~l~dr~Grr~~ 76 (439)
+|.+..+||||.+
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 5778889998864
No 18
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=24.70 E-value=89 Score=17.81 Aligned_cols=13 Identities=0% Similarity=-0.092 Sum_probs=5.5
Q ss_pred HHHHHHHHhccCC
Q 013617 423 LSSFVFLLFSTGE 435 (439)
Q Consensus 423 ~~~~~~~~~~~~~ 435 (439)
+....++++++++
T Consensus 26 i~~~~~~~~RRRr 38 (44)
T 2l2t_A 26 VGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhhh
Confidence 3334444444443
No 19
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=24.32 E-value=1.1e+02 Score=19.73 Aligned_cols=30 Identities=3% Similarity=-0.366 Sum_probs=14.4
Q ss_pred CchhHHHHhHHHHHHHHHHhhhccCCCCCC
Q 013617 163 PNSVFNAEAALGGMWSLLWFKYATDPPRSE 192 (439)
Q Consensus 163 wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (439)
|-.++.+...+.++..-.+-.++||..++.
T Consensus 32 ~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~a 61 (77)
T 2dw3_A 32 WAGGVFFGTLLLIGFFRVVGRMLPIQENQA 61 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTTCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchhcccC
Confidence 444444444444444444445667765544
No 20
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=23.94 E-value=93 Score=17.73 Aligned_cols=14 Identities=7% Similarity=0.078 Sum_probs=6.2
Q ss_pred HHHHHHHHHhccCC
Q 013617 422 ILSSFVFLLFSTGE 435 (439)
Q Consensus 422 ~~~~~~~~~~~~~~ 435 (439)
++....++++++++
T Consensus 26 ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 26 VVALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhhhH
Confidence 33444444554443
No 21
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=20.87 E-value=1.2e+02 Score=25.41 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=13.7
Q ss_pred CchhHHHHhHHHHHHHHHHhhh
Q 013617 163 PNSVFNAEAALGGMWSLLWFKY 184 (439)
Q Consensus 163 wr~~f~~~~~~~~~~~~~~~~~ 184 (439)
|.|.|++.-+++.+...+.+.+
T Consensus 203 ~~Wvy~vgP~~Ga~la~~~y~~ 224 (266)
T 3d9s_A 203 AHWVFWVGPIVGAVLAAILYFY 224 (266)
T ss_dssp THHHHHHHHHHHHHHHHHHHHH
T ss_pred CEeeeehHHHHHHHHHHHHHHH
Confidence 3778888777766655444433
Done!