BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013618
(439 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BTW|B Chain B, Crystal Structure Of Alr0975
Length = 254
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 78/158 (49%), Gaps = 7/158 (4%)
Query: 3 GCNKARKTLSGRPWRWFDESMLDCCEPL------EKVKEKGISFGKLVCLAHCAGAKVEA 56
G N A +T P+R F + E E V ++G + +L L G KV+
Sbjct: 94 GIN-APETAQYSPYRVFTQDNFFSNEKTKAVIAPEVVAKQGXTLDELGRLIASYGVKVKV 152
Query: 57 FRTNQSTIDDFRKYIIRCSASEDCHVISSYHRGAFKQTGTGHFSPIGGYHAGRDMALILD 116
+ + I+DFRK + + VI +Y R Q GH SP+ Y+ D LI D
Sbjct: 153 NHASDTNIEDFRKQVAENLKQDGNFVIVNYLRKEIGQERGGHISPLAAYNEQTDRFLIXD 212
Query: 117 VARFKYPPHWVPLTLLWEAMDRVDDATGQRRGFVLVSR 154
V+R+KYPP WV T LW+A + VD + + RGFV VS+
Sbjct: 213 VSRYKYPPVWVKTTDLWKAXNTVDSVSQKTRGFVFVSK 250
>pdb|2BTW|A Chain A, Crystal Structure Of Alr0975
pdb|2BU3|A Chain A, Acyl-Enzyme Intermediate Between Alr0975 And Glutathione
At Ph 3.4
pdb|2BU3|B Chain B, Acyl-Enzyme Intermediate Between Alr0975 And Glutathione
At Ph 3.4
Length = 254
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 77/158 (48%), Gaps = 7/158 (4%)
Query: 3 GCNKARKTLSGRPWRWFDESMLDCCEPL------EKVKEKGISFGKLVCLAHCAGAKVEA 56
G N A +T P+R F + E E V +G + +L L G KV+
Sbjct: 94 GIN-APETAQYSPYRVFTQDNFFSNEKTKAVIAPEVVARQGXTLDELGRLIASYGVKVKV 152
Query: 57 FRTNQSTIDDFRKYIIRCSASEDCHVISSYHRGAFKQTGTGHFSPIGGYHAGRDMALILD 116
+ + I+DFRK + + VI +Y R Q GH SP+ Y+ D LI D
Sbjct: 153 NHASDTNIEDFRKQVAENLKQDGNFVIVNYLRKEIGQERGGHISPLAAYNEQTDRFLIXD 212
Query: 117 VARFKYPPHWVPLTLLWEAMDRVDDATGQRRGFVLVSR 154
V+R+KYPP WV T LW+A + VD + + RGFV VS+
Sbjct: 213 VSRYKYPPVWVKTTDLWKAXNTVDSVSQKTRGFVFVSK 250
>pdb|1SZP|A Chain A, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|B Chain B, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|C Chain C, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|D Chain D, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|E Chain E, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|F Chain F, A Crystal Structure Of The Rad51 Filament
Length = 321
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 284 AEKVCCQGARILAGKFDSSERFYCRETCVKCLKANSDKPVTLVSGTVVNGSIEQ 337
A+K+ + AR++ F ++ F+ R + + CL S TL+ G V GSI +
Sbjct: 50 ADKLLNEAARLVPMGFVTAADFHMRRSELICLTTGSKNLDTLLGGGVETGSITE 103
>pdb|3LDA|A Chain A, Yeast Rad51 H352y Filament Interface Mutant
Length = 400
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 284 AEKVCCQGARILAGKFDSSERFYCRETCVKCLKANSDKPVTLVSGTVVNGSIEQ 337
A+K+ + AR++ F ++ F+ R + + CL S TL+ G V GSI +
Sbjct: 129 ADKLLNEAARLVPMGFVTAADFHMRRSELICLTTGSKNLDTLLGGGVETGSITE 182
>pdb|1DBZ|A Chain A, C153s Mutant Of Pea Fructose-1,6-Bisphosphatase
pdb|1DBZ|B Chain B, C153s Mutant Of Pea Fructose-1,6-Bisphosphatase
pdb|1DBZ|C Chain C, C153s Mutant Of Pea Fructose-1,6-Bisphosphatase
pdb|1DBZ|D Chain D, C153s Mutant Of Pea Fructose-1,6-Bisphosphatase
Length = 357
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 238 LALKEEVLRQVQETLLFKHVVTFLSSVNSCCRSMSVLVHKNELPDIAEKVCCQGARILAG 297
+ L +L+Q Q+ ++ + LSS++ C+ ++ LV + +I+ QGA + G
Sbjct: 19 ITLTSWLLQQEQKGIIDAELTIVLSSISMACKQIASLVQR---ANISNLTGTQGAVNIQG 75
Query: 298 KFDSSERFYCRETCVKCLKAN 318
+ E CL+++
Sbjct: 76 EDQKKLDVISNEVFSNCLRSS 96
>pdb|1D9Q|A Chain A, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
pdb|1D9Q|B Chain B, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
pdb|1D9Q|C Chain C, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
pdb|1D9Q|D Chain D, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
pdb|1DCU|A Chain A, Redox Signaling In The Chloroplast: Structure Of Oxidized
Pea Fructose-1,6-Bisphosphate Phosphatase
pdb|1DCU|B Chain B, Redox Signaling In The Chloroplast: Structure Of Oxidized
Pea Fructose-1,6-Bisphosphate Phosphatase
pdb|1DCU|C Chain C, Redox Signaling In The Chloroplast: Structure Of Oxidized
Pea Fructose-1,6-Bisphosphate Phosphatase
pdb|1DCU|D Chain D, Redox Signaling In The Chloroplast: Structure Of Oxidized
Pea Fructose-1,6-Bisphosphate Phosphatase
Length = 357
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 238 LALKEEVLRQVQETLLFKHVVTFLSSVNSCCRSMSVLVHKNELPDIAEKVCCQGARILAG 297
+ L +L+Q Q+ ++ + LSS++ C+ ++ LV + +I+ QGA + G
Sbjct: 19 ITLTSWLLQQEQKGIIDAELTIVLSSISMACKQIASLVQR---ANISNLTGTQGAVNIQG 75
Query: 298 KFDSSERFYCRETCVKCLKAN 318
+ E CL+++
Sbjct: 76 EDQKKLDVISNEVFSNCLRSS 96
>pdb|4DNX|A Chain A, The Structure Of The Atp Sulfurylase From Allochromatium
Vinosum In The Open State
pdb|4DNX|B Chain B, The Structure Of The Atp Sulfurylase From Allochromatium
Vinosum In The Open State
Length = 397
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 82 VISSYHRGAFKQTGTGHFSPIGGYHAGRD-----MALILDVARFKYPPHWVPLTLLWEAM 136
++SS G G G+FSP+ G+ D ++ L RF +P VPL L E+
Sbjct: 35 IVSSQAAGNAVMLGAGYFSPLDGFMNLADALSSAQSMTLTDGRF-FP---VPLLCLLESA 90
Query: 137 DRVDDAT 143
D + AT
Sbjct: 91 DAIAGAT 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,560,201
Number of Sequences: 62578
Number of extensions: 513420
Number of successful extensions: 1169
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1164
Number of HSP's gapped (non-prelim): 8
length of query: 439
length of database: 14,973,337
effective HSP length: 102
effective length of query: 337
effective length of database: 8,590,381
effective search space: 2894958397
effective search space used: 2894958397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)