Query 013618
Match_columns 439
No_of_seqs 133 out of 168
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 13:57:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013618.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013618hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bu3_A ALR0975 protein; phytoc 100.0 2.4E-60 8.1E-65 457.0 14.7 152 6-157 95-253 (254)
2 3k8u_A Putative ABC transporte 92.3 0.4 1.4E-05 41.0 7.6 95 35-155 46-140 (156)
3 3b79_A Toxin secretion ATP-bin 91.3 0.29 9.9E-06 39.9 5.3 82 35-136 36-117 (129)
4 3zua_A CLD, alpha-hemolysin tr 89.9 0.84 2.9E-05 38.4 7.1 81 35-136 43-123 (142)
5 3bdk_A D-mannonate dehydratase 68.0 19 0.00064 36.2 9.0 95 12-109 21-161 (386)
6 1tz9_A Mannonate dehydratase; 57.6 29 0.00099 33.3 7.9 70 15-87 14-117 (367)
7 1wjn_A Tubulin-folding protein 33.9 1.3E+02 0.0044 23.7 7.0 67 53-119 24-94 (97)
8 2l69_A Rossmann 2X3 fold prote 33.0 98 0.0034 26.6 6.4 41 39-83 14-54 (134)
9 1q06_A Transcriptional regulat 31.8 33 0.0011 29.1 3.3 37 13-49 33-69 (135)
10 2jml_A DNA binding domain/tran 30.5 22 0.00074 27.4 1.8 44 7-50 33-77 (81)
11 3erv_A Putative C39-like pepti 28.7 1.2E+02 0.0041 28.6 6.9 88 37-134 106-211 (236)
12 3gp4_A Transcriptional regulat 26.9 29 0.00098 29.9 2.1 40 9-49 32-71 (142)
13 3phx_A RNA-directed RNA polyme 24.8 24 0.00081 32.1 1.2 50 41-103 105-158 (185)
14 2vz4_A Tipal, HTH-type transcr 24.5 26 0.00088 28.5 1.3 43 7-49 28-70 (108)
15 1r8d_A Transcription activator 23.8 28 0.00097 28.2 1.4 44 7-50 29-72 (109)
16 1c4e_A Protein (gurmarin); swe 23.1 17 0.00059 25.2 -0.0 9 23-31 14-22 (35)
17 2j8a_A Histone-lysine N-methyl 22.7 40 0.0014 29.9 2.2 20 137-156 38-57 (136)
18 2zhg_A Redox-sensitive transcr 22.5 28 0.00097 30.4 1.2 42 7-49 38-79 (154)
19 2lkz_A RNA-binding protein 5; 22.0 1E+02 0.0035 24.3 4.4 17 139-155 45-61 (95)
20 2d3a_A Glutamine synthetase; l 21.2 88 0.003 31.0 4.6 59 41-101 173-254 (356)
21 2ojw_A Glutamine synthetase; a 20.7 75 0.0026 31.8 4.0 59 41-101 196-277 (384)
No 1
>2bu3_A ALR0975 protein; phytochelatin synthase, PCS, acyl-enzyme intermedia nostoc, glutathione metabolism, cysteine protease, transfer; HET: 3GC; 1.4A {Anabaena SP} SCOP: d.3.1.14 PDB: 2btw_A* 2btw_B
Probab=100.00 E-value=2.4e-60 Score=457.02 Aligned_cols=152 Identities=34% Similarity=0.600 Sum_probs=138.5
Q ss_pred CC-CCCcccCccccc-cccccc-----ccCChHHHHHcCCcHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHhcCC
Q 013618 6 KA-RKTLSGRPWRWF-DESMLD-----CCEPLEKVKEKGISFGKLVCLAHCAGAKVEAFRTNQSTIDDFRKYIIRCSASE 78 (439)
Q Consensus 6 ~~-~~r~WKGpWRWf-~EsmLd-----CC~ple~Vk~~GITL~e~~cLA~CnG~~Vq~~r~d~~SldeFR~~V~~~~ss~ 78 (439)
.+ |+|.|||||||| +|+||+ ||.|++.|+++||||+||+|||+|+|++|++|++++.++++||+.|+++++++
T Consensus 95 id~P~~~wk~pwr~~Tqe~mld~~~~~~~~~~~~v~~~GiTL~el~~La~c~G~~v~~y~a~~~sl~~fR~~v~~~~~~~ 174 (254)
T 2bu3_A 95 INAPETAQYSPYRVFTQDNFFSNEKTKAVIAPEVVARQGMTLDELGRLIASYGVKVKVNHASDTNIEDFRKQVAENLKQD 174 (254)
T ss_dssp CCC--------CCCCCTTTTTC---CTTTSCHHHHHHHCCCHHHHHHHHHTTTCEEEEEEGGGSCHHHHHHHHHHHHTCT
T ss_pred CCCCCccccCceeeechHhHhcccccccccChhhhccCCcCHHHHHHHHHhCCceEEEEECCcCcHHHHHHHHHHHhCCC
Confidence 45 999999999999 789998 99999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEecccccccCCCccccccccccCCCCeEEEEecCCCCCCceeeehhHHHHhccccCCCCCceeeEEEEeCCCC
Q 013618 79 DCHVISSYHRGAFKQTGTGHFSPIGGYHAGRDMALILDVARFKYPPHWVPLTLLWEAMDRVDDATGQRRGFVLVSRPHR 157 (439)
Q Consensus 79 d~~lIVnY~R~~LgQtG~GHFSPIGGYh~~sD~VLILDVARfKYPP~WVpl~~L~eAM~tiD~~TgrsRG~lllsk~~~ 157 (439)
+++|||||+|++|||+|+||||||||||+++|+|||||||||||||||||+++||+||+++|++||++||||+|++.++
T Consensus 175 ~~~vvvny~R~~l~q~G~GHfSPIggY~~~~D~vLIlDVar~kYpp~WV~~~~L~~Am~~~D~~s~~~RG~~li~~~~~ 253 (254)
T 2bu3_A 175 GNFVIVNYLRKEIGQERGGHISPLAAYNEQTDRFLIMDVSRYKYPPVWVKTTDLWKAMNTVDSVSQKTRGFVFVSKTQD 253 (254)
T ss_dssp TEEEEEEEEGGGGTCSSSEEEEEEEEEETTTTEEEECCSCTTTCCCEEEEHHHHHHHHSSEETTTTEECEEEEEEC---
T ss_pred CcEEEEEeEccccCCCCCCceeceeeEcCCCCeEEEEecCccCCCCEeeeHHHHHHHHhcccccCCCcceEEEEecccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998763
No 2
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=92.32 E-value=0.4 Score=41.00 Aligned_cols=95 Identities=14% Similarity=0.156 Sum_probs=66.2
Q ss_pred HcCCcHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHhcCCCcEEEEEecccccccCCCccccccccccCCCCeEEE
Q 013618 35 EKGISFGKLVCLAHCAGAKVEAFRTNQSTIDDFRKYIIRCSASEDCHVISSYHRGAFKQTGTGHFSPIGGYHAGRDMALI 114 (439)
Q Consensus 35 ~~GITL~e~~cLA~CnG~~Vq~~r~d~~SldeFR~~V~~~~ss~d~~lIVnY~R~~LgQtG~GHFSPIGGYh~~sD~VLI 114 (439)
+.|+|+.++...|+..|++++.++.+ ++.|+ + ..-.-.+|+...+. .|.|||--|-+++ .+.|+|
T Consensus 46 ~~g~s~~~l~~~a~~~Gl~a~~~~~~---~~~~~--l----~~~~lP~I~~~~~~----g~~~hfvVl~~~~--~~~v~I 110 (156)
T 3k8u_A 46 KQGTTALGIVEAAKKLGFETRSIKAD---MTLFD--Y----NDLTYPFIVHVIKG----KRLQHYYVVYGSQ--NNQLII 110 (156)
T ss_dssp TTBCCHHHHHHHHHHTTEEEEEEECC---GGGGG--C----TTCCSCEEEEEEET----TEEEEEEEEEEEE--TTEEEE
T ss_pred CCCcCHHHHHHHHHHCCCeeEEEEee---hhhhh--H----hcCCCCEEEEEEec----CCCcEEEEEEEEc--CCEEEE
Confidence 47899999999999999999999864 33331 1 12234566655332 1358999998887 468999
Q ss_pred EecCCCCCCceeeehhHHHHhccccCCCCCceeeEEEEeCC
Q 013618 115 LDVARFKYPPHWVPLTLLWEAMDRVDDATGQRRGFVLVSRP 155 (439)
Q Consensus 115 LDVARfKYPP~WVpl~~L~eAM~tiD~~TgrsRG~lllsk~ 155 (439)
.|.+.- -.+.+++.+++-+.- .|++++-++
T Consensus 111 ~DP~~g-~~~~~ls~~ef~~~w----------~G~~l~~~p 140 (156)
T 3k8u_A 111 GDPDPS-VKVTRMSKERFQSEW----------TGLAIFLAP 140 (156)
T ss_dssp EECSTT-TEEEEEEHHHHHHHE----------EEEEEEEEE
T ss_pred EcCCCC-cceEEEcHHHHHhhC----------ceEEEEEEc
Confidence 999742 128999999876554 377765443
No 3
>3b79_A Toxin secretion ATP-binding protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus rimd 2210633}
Probab=91.30 E-value=0.29 Score=39.94 Aligned_cols=82 Identities=16% Similarity=0.109 Sum_probs=60.3
Q ss_pred HcCCcHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHhcCCCcEEEEEecccccccCCCccccccccccCCCCeEEE
Q 013618 35 EKGISFGKLVCLAHCAGAKVEAFRTNQSTIDDFRKYIIRCSASEDCHVISSYHRGAFKQTGTGHFSPIGGYHAGRDMALI 114 (439)
Q Consensus 35 ~~GITL~e~~cLA~CnG~~Vq~~r~d~~SldeFR~~V~~~~ss~d~~lIVnY~R~~LgQtG~GHFSPIGGYh~~sD~VLI 114 (439)
..|+|+..+...|+..|++++.++.+ ++++.+. .-..|+... .|||--|-+++.+...++|
T Consensus 36 ~~g~s~~~l~~~a~~~Gl~~~~~~~~---~~~L~~l--------~lP~I~~~~--------~~h~vVl~~~~~~~~~~~i 96 (129)
T 3b79_A 36 DGKLTPFLLPRAAERAGLVAKENRAE---LEKISSL--------ILPAILVLK--------GGDSCVLNSINMETREAEV 96 (129)
T ss_dssp TTBCCTTTHHHHHHHHTEEEEEEECC---GGGSCGG--------GCSEEEEEG--------GGEEEEEEEEETTTTEEEE
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEECC---HHHCCcC--------CCCEEEEEc--------CCCEEEEEEEcCCCceEEE
Confidence 46999999999999999999998854 4443221 123444442 4799999999976668999
Q ss_pred EecCCCCCCceeeehhHHHHhc
Q 013618 115 LDVARFKYPPHWVPLTLLWEAM 136 (439)
Q Consensus 115 LDVARfKYPP~WVpl~~L~eAM 136 (439)
.|.+. ...+.+++.+++-+.-
T Consensus 97 ~dp~~-~~g~~~~~~~ef~~~w 117 (129)
T 3b79_A 97 TTLES-GMVPISIPLEDLLEQY 117 (129)
T ss_dssp ECTTT-TTSCEEEEHHHHHHHE
T ss_pred EccCC-CCCcEEeeHHHHHhhC
Confidence 99862 3467999999975544
No 4
>3zua_A CLD, alpha-hemolysin translocation ATP-binding protein; C39 peptidase-like domain, ABC transporter, haemolysin, HYDR heteronuclear; NMR {Escherichia coli}
Probab=89.89 E-value=0.84 Score=38.37 Aligned_cols=81 Identities=16% Similarity=0.170 Sum_probs=58.1
Q ss_pred HcCCcHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHhcCCCcEEEEEecccccccCCCccccccccccCCCCeEEE
Q 013618 35 EKGISFGKLVCLAHCAGAKVEAFRTNQSTIDDFRKYIIRCSASEDCHVISSYHRGAFKQTGTGHFSPIGGYHAGRDMALI 114 (439)
Q Consensus 35 ~~GITL~e~~cLA~CnG~~Vq~~r~d~~SldeFR~~V~~~~ss~d~~lIVnY~R~~LgQtG~GHFSPIGGYh~~sD~VLI 114 (439)
+.|+|+.++...|+..|++++.++. +++++.+ -.-..|+.. .++.|| -|.+++.+.+.++|
T Consensus 43 ~~g~s~~~l~~aa~~~Gl~a~~~~~---~~~~L~~--------l~lP~Il~~-------~~g~~~-Vv~~~~~~~~~~~I 103 (142)
T 3zua_A 43 GTGLGLTSWLLAAKSLELKVKQVKK---TIDRLNF--------ISLPALVWR-------EDGRHF-ILTKVSKEANRYLI 103 (142)
T ss_dssp SSCCCHHHHHHHHHTTTEEEEEEEC---CHHHHTT--------SSSSEEECC-------TTSCCE-EEEEEETTTTEEEE
T ss_pred cCCcCHHHHHHHHHHCCCeeEEeec---CHHHHhc--------CCCCEEEEE-------cCCCEE-EEEEEeCCCCEEEE
Confidence 4799999999999999999999985 4555432 123455521 223466 45568877789999
Q ss_pred EecCCCCCCceeeehhHHHHhc
Q 013618 115 LDVARFKYPPHWVPLTLLWEAM 136 (439)
Q Consensus 115 LDVARfKYPP~WVpl~~L~eAM 136 (439)
.|.+.-+ +.+++.+++-+.-
T Consensus 104 ~dP~~g~--~~~~s~~ef~~~w 123 (142)
T 3zua_A 104 FDLEQRN--PRVLEQSEFEALY 123 (142)
T ss_dssp EETTTTE--EEEEEHHHHHHHC
T ss_pred EcCCCCC--cEEecHHHHHhhC
Confidence 9997533 8999999876654
No 5
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=68.02 E-value=19 Score=36.23 Aligned_cols=95 Identities=19% Similarity=0.341 Sum_probs=58.1
Q ss_pred ccCcccccccccccccCChHHHHHc-CCc-------------------HHHHHHHHHhcCCeEEEEec-----C------
Q 013618 12 SGRPWRWFDESMLDCCEPLEKVKEK-GIS-------------------FGKLVCLAHCAGAKVEAFRT-----N------ 60 (439)
Q Consensus 12 WKGpWRWf~EsmLdCC~ple~Vk~~-GIT-------------------L~e~~cLA~CnG~~Vq~~r~-----d------ 60 (439)
=|--||||.+.- -..++.+++- |.+ ..++..+++.+|+.+.+... +
T Consensus 21 m~~~~rW~g~~d---~~~L~~i~q~~G~~gIe~~l~~~~~g~~w~~~~i~~lk~~l~~~GL~i~~i~s~~~~~~i~~~~~ 97 (386)
T 3bdk_A 21 MKMSFRWYGKKD---PVTLEEIKAIPGMQGIVTAVYDVPVGQAWPLENILELKKMVEEAGLEITVIESIPVHEDIKQGKP 97 (386)
T ss_dssp BCCCCBCCCTTC---SSCHHHHHTSTTCCEEEECCCSSCSSSCCCHHHHHHHHHHHHTTTCEEEEEECCCCCHHHHTTCT
T ss_pred hhcEEEecCCCC---HHHHHHHHhcCCCCEEEeCCcccCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccccccCcH
Confidence 466799997622 3588889998 854 34666777889999876531 1
Q ss_pred --CCCHHHHHHHHHHHhcCCCcEEEEEec------cccccc-CCCc----cc--cccccccCCC
Q 013618 61 --QSTIDDFRKYIIRCSASEDCHVISSYH------RGAFKQ-TGTG----HF--SPIGGYHAGR 109 (439)
Q Consensus 61 --~~SldeFR~~V~~~~ss~d~~lIVnY~------R~~LgQ-tG~G----HF--SPIGGYh~~s 109 (439)
+..++.|++.|..+..-.-..|..||. |..+-- ..+| -| +++++||++.
T Consensus 98 ~r~~~ie~~k~~i~~aa~lGi~~v~~nf~p~~~w~rt~~~~~~~~G~~~~~f~~~~~~~~d~~~ 161 (386)
T 3bdk_A 98 NRDALIENYKTSIRNVGAAGIPVVCYNFMPVFDWTRSDLHHPLPDGSTSLAFLKSDLAGVDPVA 161 (386)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEECCCSSCSCCCSEEEEECTTSCEEEEEEGGGGSSCCC--
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEcCcccccccccccccccCCCccccccchhhhhcccchh
Confidence 124567777777665444445666775 544421 1123 23 5778887654
No 6
>1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium; 2.90A {Enterococcus faecalis} SCOP: c.1.15.6
Probab=57.56 E-value=29 Score=33.30 Aligned_cols=70 Identities=19% Similarity=0.323 Sum_probs=44.3
Q ss_pred ccccccc-ccccccCChHHHHHc-CC-------------------cHHHHHHHHHhcCCeEEEEecCCC-----------
Q 013618 15 PWRWFDE-SMLDCCEPLEKVKEK-GI-------------------SFGKLVCLAHCAGAKVEAFRTNQS----------- 62 (439)
Q Consensus 15 pWRWf~E-smLdCC~ple~Vk~~-GI-------------------TL~e~~cLA~CnG~~Vq~~r~d~~----------- 62 (439)
-||||.. +.- ..++.+++. |. .+.++..+++.+|+++..++....
T Consensus 14 ~~~~~g~~~~~---~~L~~i~~~~G~~~ve~~~~~~~~g~~~~~~~~~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~r 90 (367)
T 1tz9_A 14 GFRWYGAAGDA---IPLKHIRQIPGITGVVGTLLNKLPGDVWTVAEIQALKQSVEQEGLALLGIESVAIHDAIKAGTDQR 90 (367)
T ss_dssp CCBCCCTTTCC---SCHHHHTTSTTCCEEEECCSSSCTTCCCCHHHHHHHHHHHHHTTCEEEEECSCCCCHHHHHTCSTH
T ss_pred eeeecCCCCCh---HHHHHHhhcCCCCeEEecCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEEecCCCcHHHhcCCcCH
Confidence 4888876 322 357788888 76 345777888899999987654322
Q ss_pred --CHHHHHHHHHHHhcCCCcEEEEEec
Q 013618 63 --TIDDFRKYIIRCSASEDCHVISSYH 87 (439)
Q Consensus 63 --SldeFR~~V~~~~ss~d~~lIVnY~ 87 (439)
.++.|++.+..+..-.-..+++||.
T Consensus 91 ~~~i~~~~~~i~~a~~lG~~~v~~n~~ 117 (367)
T 1tz9_A 91 DHYIDNYRQTLRNLGKCGISLVCYSFK 117 (367)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 2455666666554434445666543
No 7
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=33.90 E-value=1.3e+02 Score=23.66 Aligned_cols=67 Identities=12% Similarity=0.105 Sum_probs=39.8
Q ss_pred eEEEEecCCCCHHHHHHHHHHHhcCCCcEEEEEecccc---cccCCCccccccccccCCCC-eEEEEecCC
Q 013618 53 KVEAFRTNQSTIDDFRKYIIRCSASEDCHVISSYHRGA---FKQTGTGHFSPIGGYHAGRD-MALILDVAR 119 (439)
Q Consensus 53 ~Vq~~r~d~~SldeFR~~V~~~~ss~d~~lIVnY~R~~---LgQtG~GHFSPIGGYh~~sD-~VLILDVAR 119 (439)
.++.......|+.+|+..|...+.-+-..+-+.|.-.. ....=.-...++|-|+.+.+ .+.|.|.++
T Consensus 24 ~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d~~p 94 (97)
T 1wjn_A 24 ILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRWSGP 94 (97)
T ss_dssp CEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEECCSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEEecCC
Confidence 33444445689999999999876543333333333111 11111245669999999774 677777654
No 8
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=32.98 E-value=98 Score=26.63 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=32.4
Q ss_pred cHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 013618 39 SFGKLVCLAHCAGAKVEAFRTNQSTIDDFRKYIIRCSASEDCHVI 83 (439)
Q Consensus 39 TL~e~~cLA~CnG~~Vq~~r~d~~SldeFR~~V~~~~ss~d~~lI 83 (439)
||.+|..+.+-||.+|.++| |-.++...+.+....-|.-++
T Consensus 14 tlrkfkdiikkngfkvrtvr----spqelkdsieelvkkynativ 54 (134)
T 2l69_A 14 TLRKFKDIIKKNGFKVRTVR----SPQELKDSIEELVKKYNATIV 54 (134)
T ss_dssp HHHHHHHHHHHTTCEEEEEC----SHHHHHHHHHHHTTCCCCEEE
T ss_pred HHHHHHHHHHhcCceEEEec----CHHHHHHHHHHHHHHhCCeEE
Confidence 78899999999999999887 567788888877765554433
No 9
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=31.77 E-value=33 Score=29.09 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=29.3
Q ss_pred cCcccccccccccccCChHHHHHcCCcHHHHHHHHHh
Q 013618 13 GRPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHC 49 (439)
Q Consensus 13 KGpWRWf~EsmLdCC~ple~Vk~~GITL~e~~cLA~C 49 (439)
.|.+|.|+++-+..=.-+-..++.|+|++++..+...
T Consensus 33 ~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~eI~~~l~~ 69 (135)
T 1q06_A 33 ENGYRTYTQQHLNELTLLRQARQVGFNLEESGELVNL 69 (135)
T ss_dssp TTSCEECCHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 6889999997766444455567899999999998865
No 10
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=30.48 E-value=22 Score=27.40 Aligned_cols=44 Identities=11% Similarity=0.293 Sum_probs=32.3
Q ss_pred CCCCcccCcccccccccccccCChHHHH-HcCCcHHHHHHHHHhc
Q 013618 7 ARKTLSGRPWRWFDESMLDCCEPLEKVK-EKGISFGKLVCLAHCA 50 (439)
Q Consensus 7 ~~~r~WKGpWRWf~EsmLdCC~ple~Vk-~~GITL~e~~cLA~Cn 50 (439)
.|.|.-.|..|.|+++-+..-.-+-..+ +.|++++++..+....
T Consensus 33 ~p~r~~~~g~R~Y~~~dl~~l~~I~~l~~~~G~sl~ei~~~l~~~ 77 (81)
T 2jml_A 33 RPLRSEGNNYRVYSREEVEAVRRVARLIQEEGLSVSEAIAQVKTE 77 (81)
T ss_dssp CCBSSSCSSSCEECHHHHHHHHHHHHHHHHTSTHHHHHHHHHHHS
T ss_pred CCcCCCCCCeeecCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHcc
Confidence 4555433779999997776555556677 8999999999887654
No 11
>3erv_A Putative C39-like peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Bacillus anthracis}
Probab=28.65 E-value=1.2e+02 Score=28.60 Aligned_cols=88 Identities=19% Similarity=0.145 Sum_probs=56.6
Q ss_pred CCcHHHHHHHHHhcC-CeEEEEecCCCCHHHHHHHHHHHhcCCCcEEEEEe--ccccc------------cc---CCCcc
Q 013618 37 GISFGKLVCLAHCAG-AKVEAFRTNQSTIDDFRKYIIRCSASEDCHVISSY--HRGAF------------KQ---TGTGH 98 (439)
Q Consensus 37 GITL~e~~cLA~CnG-~~Vq~~r~d~~SldeFR~~V~~~~ss~d~~lIVnY--~R~~L------------gQ---tG~GH 98 (439)
||--..+..+|+..+ ..+ +.-...++++..+.|.+ +..|||-. .=+.+ |. +..+|
T Consensus 106 giy~~~i~~~a~~y~~~~~--~dltG~sl~~L~~~I~~-----G~PVIv~~t~~~~p~~~~~~~~W~~~~G~~~~~~~~H 178 (236)
T 3erv_A 106 GVYHGPLFQLAKKYLPNKA--VDLTGKSIEELYKSVKA-----GQPVVIITNATFAPLDEDEFTTWETNNGDVSITYNEH 178 (236)
T ss_dssp CCCHHHHHHHHHHHCTTTE--EECTTSCHHHHHHHHHT-----TCCEEEEEETTSSCCCGGGCEEEEETTEEEEECTTEE
T ss_pred eeecHHHHHHHHHHhhcce--eecCCCCHHHHHHHHHC-----CCeEEEEEeCCcccccccccceeecCCCceeeccCCe
Confidence 555667888998885 333 23334588888877753 44555522 11111 11 34679
Q ss_pred ccccccccCCCCeEEEEecCCCCCCceeeehhHHHH
Q 013618 99 FSPIGGYHAGRDMALILDVARFKYPPHWVPLTLLWE 134 (439)
Q Consensus 99 FSPIGGYh~~sD~VLILDVARfKYPP~WVpl~~L~e 134 (439)
|--|=|||. +.|.|.|.+.-+ ...+++.+++-+
T Consensus 179 ~VVl~GYd~--~~vyi~DP~~g~-~~~~vs~~eFe~ 211 (236)
T 3erv_A 179 CVVLIGYDQ--ESVYIRDPLKDS-LDVKVPREKFEQ 211 (236)
T ss_dssp EEEEEEECS--SEEEEECTTSCC-SCCEEEHHHHHH
T ss_pred EEEEEEEeC--CEEEEECCCCCC-ccEEEcHHHHHH
Confidence 999999997 699999998643 347888766433
No 12
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=26.92 E-value=29 Score=29.94 Aligned_cols=40 Identities=15% Similarity=0.081 Sum_probs=32.2
Q ss_pred CCcccCcccccccccccccCChHHHHHcCCcHHHHHHHHHh
Q 013618 9 KTLSGRPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHC 49 (439)
Q Consensus 9 ~r~WKGpWRWf~EsmLdCC~ple~Vk~~GITL~e~~cLA~C 49 (439)
.|. .+..|.|+++-+..-.-+-..++.|+|++++..+...
T Consensus 32 ~r~-~~g~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~~ 71 (142)
T 3gp4_A 32 HRN-ESGVRKFGAEDLRWILFTRQMRRAGLSIEALIDYLAL 71 (142)
T ss_dssp CBC-TTSCBCBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCC-CCCCeeeCHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 444 7889999998777655666778899999999988764
No 13
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=24.84 E-value=24 Score=32.11 Aligned_cols=50 Identities=18% Similarity=0.105 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCeEEEEecCCCC----HHHHHHHHHHHhcCCCcEEEEEecccccccCCCccccccc
Q 013618 41 GKLVCLAHCAGAKVEAFRTNQST----IDDFRKYIIRCSASEDCHVISSYHRGAFKQTGTGHFSPIG 103 (439)
Q Consensus 41 ~e~~cLA~CnG~~Vq~~r~d~~S----ldeFR~~V~~~~ss~d~~lIVnY~R~~LgQtG~GHFSPIG 103 (439)
-|+..||+..+..+.+|..+..+ +..| .....+..+.+.| .|++||++|-
T Consensus 105 iEL~Als~~~~v~I~V~~~d~~~~~~~i~~f------~~~~~~~~I~L~Y-------~g~~HYdsl~ 158 (185)
T 3phx_A 105 LEASMLAKEMGITIIIWTVAASDEVEAGIKF------GDGDVFTAVNLLH-------SGQTHFDALR 158 (185)
T ss_dssp HHHHHHHHHHCCCEEEEEC--CCBCCEEEEE------SSCCTTTSEEEEE-------ETTTEEEEEE
T ss_pred HHHHHHHHHHCCcEEEEEecCCCCceEEEEc------CCCCCCCEEEEEE-------CCCcCchhce
Confidence 48899999999999998765433 2222 1112245677788 4679998763
No 14
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=24.51 E-value=26 Score=28.48 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=31.5
Q ss_pred CCCCcccCcccccccccccccCChHHHHHcCCcHHHHHHHHHh
Q 013618 7 ARKTLSGRPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHC 49 (439)
Q Consensus 7 ~~~r~WKGpWRWf~EsmLdCC~ple~Vk~~GITL~e~~cLA~C 49 (439)
.|.+.=.|..|.|+++-+..-.-+-..++.|++++++..+...
T Consensus 28 ~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~~I~~~l~~ 70 (108)
T 2vz4_A 28 VPSERSHAGHRRYSDADLDRLQQILFYRELGFPLDEVAALLDD 70 (108)
T ss_dssp CCSEECSSCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHTC
T ss_pred CCCccCCCCCeecCHHHHHHHHHHHHHHHCCCCHHHHHHHHhC
Confidence 3444346789999997666444455567899999999998864
No 15
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=23.83 E-value=28 Score=28.23 Aligned_cols=44 Identities=14% Similarity=0.253 Sum_probs=31.2
Q ss_pred CCCCcccCcccccccccccccCChHHHHHcCCcHHHHHHHHHhc
Q 013618 7 ARKTLSGRPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHCA 50 (439)
Q Consensus 7 ~~~r~WKGpWRWf~EsmLdCC~ple~Vk~~GITL~e~~cLA~Cn 50 (439)
.|.+.=.|..|+|+++-+..=.-+-..++.|++++++..+....
T Consensus 29 ~p~~~~~~g~R~Y~~~dl~~l~~I~~l~~~G~~l~~I~~~l~~~ 72 (109)
T 1r8d_A 29 NPSALTDAGYRLYSDADLERLQQILFFKEIGFRLDEIKEMLDHP 72 (109)
T ss_dssp CCSEECTTCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHCT
T ss_pred CCCeECCCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHhCC
Confidence 34443467899999966654334445678899999999988753
No 16
>1c4e_A Protein (gurmarin); sweet taste suppression, cystine knot, sweet taste transduction, plant protein; HET: PCA; NMR {Gymnema sylvestre} SCOP: g.3.4.1 PDB: 1gur_A*
Probab=23.11 E-value=17 Score=25.25 Aligned_cols=9 Identities=89% Similarity=1.859 Sum_probs=7.7
Q ss_pred cccccCChH
Q 013618 23 MLDCCEPLE 31 (439)
Q Consensus 23 mLdCC~ple 31 (439)
-||||+|+|
T Consensus 14 yldcceple 22 (35)
T 1c4e_A 14 YLDCCEPLE 22 (35)
T ss_dssp TCCCSSSCC
T ss_pred hhcccChhh
Confidence 479999987
No 17
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=22.68 E-value=40 Score=29.95 Aligned_cols=20 Identities=10% Similarity=-0.024 Sum_probs=16.3
Q ss_pred cccCCCCCceeeEEEEeCCC
Q 013618 137 DRVDDATGQRRGFVLVSRPH 156 (439)
Q Consensus 137 ~tiD~~TgrsRG~lllsk~~ 156 (439)
...|+.||+||||-.|.-.+
T Consensus 38 li~Dp~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 38 AFNDPNSALPLHVYLIKYAS 57 (136)
T ss_dssp EEECTTTCCEEEEEEEECC-
T ss_pred EEecCCCCceeeEEEEEECC
Confidence 34699999999999998664
No 18
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=22.45 E-value=28 Score=30.38 Aligned_cols=42 Identities=10% Similarity=0.079 Sum_probs=31.4
Q ss_pred CCCCcccCcccccccccccccCChHHHHHcCCcHHHHHHHHHh
Q 013618 7 ARKTLSGRPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHC 49 (439)
Q Consensus 7 ~~~r~WKGpWRWf~EsmLdCC~ple~Vk~~GITL~e~~cLA~C 49 (439)
.|.|. .|..|.|+++-+..=.-+-..++.|++++++..+...
T Consensus 38 ~p~r~-~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~eI~~~l~~ 79 (154)
T 2zhg_A 38 TSIRN-SGNQRRYKRDVLRYVAIIKIAQRIGIPLATIGEAFGV 79 (154)
T ss_dssp CCEEC-TTSCEEBCTTHHHHHHHHHHHHHHTCCHHHHHHHHCC
T ss_pred CcccC-CCCCEEeCHHHHHHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 35554 6789999997766444455667889999999998864
No 19
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=21.98 E-value=1e+02 Score=24.27 Aligned_cols=17 Identities=41% Similarity=0.589 Sum_probs=13.2
Q ss_pred cCCCCCceeeEEEEeCC
Q 013618 139 VDDATGQRRGFVLVSRP 155 (439)
Q Consensus 139 iD~~TgrsRG~lllsk~ 155 (439)
.|+.||++|||--|.=.
T Consensus 45 ~d~~tg~srG~aFV~f~ 61 (95)
T 2lkz_A 45 KDKQTQQNRGFAFVQLS 61 (95)
T ss_dssp CCSSSSSCSSEEEEECS
T ss_pred ecCCCCCCceEeEEEEC
Confidence 47889999998777643
No 20
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A*
Probab=21.25 E-value=88 Score=30.96 Aligned_cols=59 Identities=14% Similarity=0.181 Sum_probs=44.0
Q ss_pred HHHHHHHHhcCCeEEEEecCC------------------CCHHHHHHHHHHHhcCCCcEEEEEeccccc-c-cCCCc---
Q 013618 41 GKLVCLAHCAGAKVEAFRTNQ------------------STIDDFRKYIIRCSASEDCHVISSYHRGAF-K-QTGTG--- 97 (439)
Q Consensus 41 ~e~~cLA~CnG~~Vq~~r~d~------------------~SldeFR~~V~~~~ss~d~~lIVnY~R~~L-g-QtG~G--- 97 (439)
+++...+...|+.|+..|..- ..+-.||..|++.... ..+.++|.=|.+ | +.|.|
T Consensus 173 ~~i~~~l~~~Gi~ve~~h~E~~pgQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~--~G~~aTFmpKP~~~d~~GSG~H~ 250 (356)
T 2d3a_A 173 DAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEI--AGVVVTFDPKPIPGDWNGAGAHT 250 (356)
T ss_dssp HHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHHHHHH--HTEEEECCSCSSCSSSCCCBEEE
T ss_pred HHHHHHHHHCCCCEEEeecCcCCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHH--hCCEEEECCCccCCCCCCCcceE
Confidence 466677788999999888642 1345689999987643 359999999999 3 58877
Q ss_pred cccc
Q 013618 98 HFSP 101 (439)
Q Consensus 98 HFSP 101 (439)
|+|-
T Consensus 251 H~Sl 254 (356)
T 2d3a_A 251 NYST 254 (356)
T ss_dssp EEEC
T ss_pred Eech
Confidence 7775
No 21
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A
Probab=20.73 E-value=75 Score=31.82 Aligned_cols=59 Identities=19% Similarity=0.213 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCeEEEEecCC------------------CCHHHHHHHHHHHhcCCCcEEEEEeccccc-c-cCCCc---
Q 013618 41 GKLVCLAHCAGAKVEAFRTNQ------------------STIDDFRKYIIRCSASEDCHVISSYHRGAF-K-QTGTG--- 97 (439)
Q Consensus 41 ~e~~cLA~CnG~~Vq~~r~d~------------------~SldeFR~~V~~~~ss~d~~lIVnY~R~~L-g-QtG~G--- 97 (439)
+++...+...|+.|+..+..- ..+-.||..|++.... ..+.++|.=|.+ | +.|.|
T Consensus 196 ~~i~~~l~~~Gi~ve~~h~E~~pgQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~--~Gl~aTFmpKP~~~d~~GSG~H~ 273 (384)
T 2ojw_A 196 EAHYRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCED--FGVIATFDPKPIPGNWNGAGCHT 273 (384)
T ss_dssp HHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETTHHHHHHHHHHHHHHHHHHH--HTCEEECCSCSSCSSSCCCBEEE
T ss_pred HHHHHHHHHCCCCeEeeecCCCCcceEEEcCCCcHHHHHHHHHHHHHHHHHHHHH--hCCEEEEeccccCCCCCCCeeeE
Confidence 466677788999999888642 1344699999987643 358999999999 7 58877
Q ss_pred cccc
Q 013618 98 HFSP 101 (439)
Q Consensus 98 HFSP 101 (439)
|+|-
T Consensus 274 H~Sl 277 (384)
T 2ojw_A 274 NFST 277 (384)
T ss_dssp EEEC
T ss_pred Eeeh
Confidence 6665
Done!