Query 013618
Match_columns 439
No_of_seqs 133 out of 168
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 13:57:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013618.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013618hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bu3a1 d.3.1.14 (A:29-238) Pr 100.0 3.2E-59 2.3E-63 436.0 14.6 146 8-153 59-210 (210)
2 d1q06a_ a.6.1.3 (A:) Transcrip 48.8 2.9 0.00021 33.0 1.4 43 7-49 27-69 (127)
3 d1r8da_ a.6.1.3 (A:) Multidrug 35.7 6.2 0.00045 30.2 1.4 43 7-49 29-71 (109)
4 d2hi6a1 c.8.2.3 (A:1-132) Hypo 30.8 14 0.001 30.1 2.9 27 109-135 49-75 (132)
5 d2ajta1 b.43.2.2 (A:329-498) L 30.7 33 0.0024 29.3 5.5 46 28-74 119-164 (170)
6 d1c4ea_ g.3.4.1 (A:) Gurmarin, 23.1 8.1 0.00059 25.2 -0.0 9 23-31 14-22 (35)
7 d1zkha1 d.15.1.1 (A:1-86) Spli 23.0 1.1E+02 0.0079 22.3 6.6 51 60-115 30-80 (86)
8 d1r8ea1 a.6.1.3 (A:3-120) Tran 21.9 18 0.0013 27.7 1.8 34 14-47 38-71 (118)
9 d1of9a_ a.64.1.4 (A:) Ameobapo 21.2 35 0.0025 24.2 3.2 45 174-218 6-50 (77)
10 d1tz9a_ c.1.15.6 (A:) Mannonat 21.0 1.1E+02 0.0082 28.1 7.7 70 14-87 3-105 (353)
No 1
>d2bu3a1 d.3.1.14 (A:29-238) Primitive phytochelatin synthase {Nostoc sp. pcc 7120 [TaxId: 103690]}
Probab=100.00 E-value=3.2e-59 Score=435.96 Aligned_cols=146 Identities=36% Similarity=0.607 Sum_probs=136.2
Q ss_pred CCCcccCcccccccccc------cccCChHHHHHcCCcHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHhcCCCcE
Q 013618 8 RKTLSGRPWRWFDESML------DCCEPLEKVKEKGISFGKLVCLAHCAGAKVEAFRTNQSTIDDFRKYIIRCSASEDCH 81 (439)
Q Consensus 8 ~~r~WKGpWRWf~EsmL------dCC~ple~Vk~~GITL~e~~cLA~CnG~~Vq~~r~d~~SldeFR~~V~~~~ss~d~~ 81 (439)
|++.||||||||+|+|+ +||.+++.|+++||||+||+|||+|+|++|+++|+++.++++||+.|++++++++++
T Consensus 59 P~~~~~~p~~~~tq~~l~~~~~~~~~~~~~~v~~~G~Tl~el~~la~~~g~~v~~~~~~~~s~d~FR~~v~~~~~~~~~~ 138 (210)
T d2bu3a1 59 PETAQYSPYRVFTQDNFFSNEKTKAVIAPEVVARQGMTLDELGRLIASYGVKVKVNHASDTNIEDFRKQVAENLKQDGNF 138 (210)
T ss_dssp --------CCCCCTTTTTC---CTTTSCHHHHHHHCCCHHHHHHHHHTTTCEEEEEEGGGSCHHHHHHHHHHHHTCTTEE
T ss_pred CCccccCccccccccccccchhhhhccCHHHHHHcCCcHHHHHHHHHhCCCeeEEEeCCcccHHHHHHHHHHHhCCCCCE
Confidence 99999999999999998 789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccccccCCCccccccccccCCCCeEEEEecCCCCCCceeeehhHHHHhccccCCCCCceeeEEEEe
Q 013618 82 VISSYHRGAFKQTGTGHFSPIGGYHAGRDMALILDVARFKYPPHWVPLTLLWEAMDRVDDATGQRRGFVLVS 153 (439)
Q Consensus 82 lIVnY~R~~LgQtG~GHFSPIGGYh~~sD~VLILDVARfKYPP~WVpl~~L~eAM~tiD~~TgrsRG~llls 153 (439)
|||||+|++|||+|+||||||||||+++|+|||||||||||||||||+++||+||+++|++||++||||+||
T Consensus 139 vivny~r~~l~q~G~GHfSPI~gY~~~~d~vlilDvar~kypp~Wv~~~~L~~am~t~D~~t~~~RG~i~is 210 (210)
T d2bu3a1 139 VIVNYLRKEIGQERGGHISPLAAYNEQTDRFLIMDVSRYKYPPVWVKTTDLWKAMNTVDSVSQKTRGFVFVS 210 (210)
T ss_dssp EEEEEEGGGGTCSSSEEEEEEEEEETTTTEEEECCSCTTTCCCEEEEHHHHHHHHSSEETTTTEECEEEEEE
T ss_pred EEEEecCcccCcCCCcceeeEEEEcCCCCEEEEEecCcccCCCeEeEHHHHHHHHhccccCCCCcceEEEeC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia coli [TaxId: 562]}
Probab=48.85 E-value=2.9 Score=32.98 Aligned_cols=43 Identities=14% Similarity=0.170 Sum_probs=33.0
Q ss_pred CCCCcccCcccccccccccccCChHHHHHcCCcHHHHHHHHHh
Q 013618 7 ARKTLSGRPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHC 49 (439)
Q Consensus 7 ~~~r~WKGpWRWf~EsmLdCC~ple~Vk~~GITL~e~~cLA~C 49 (439)
.|.+...|.+|+|++.-+..=.-+-..+..|++++++..+...
T Consensus 27 ~p~~r~~~gyR~Y~~~~i~~l~~I~~lr~~G~sl~eI~~~l~~ 69 (127)
T d1q06a_ 27 TPPMRSENGYRTYTQQHLNELTLLRQARQVGFNLEESGELVNL 69 (127)
T ss_dssp CCCEECTTSCEECCHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCccCCcCcccchHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4555677999999997776544555678899999999887754
No 3
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]}
Probab=35.73 E-value=6.2 Score=30.15 Aligned_cols=43 Identities=14% Similarity=0.257 Sum_probs=32.0
Q ss_pred CCCCcccCcccccccccccccCChHHHHHcCCcHHHHHHHHHh
Q 013618 7 ARKTLSGRPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHC 49 (439)
Q Consensus 7 ~~~r~WKGpWRWf~EsmLdCC~ple~Vk~~GITL~e~~cLA~C 49 (439)
.|.+.=+|.+|+|++.-+..=.-+-..++.|++++++..+...
T Consensus 29 ~p~~r~~~gyR~Y~~~~~~~l~~I~~lr~~G~sl~eI~~~l~~ 71 (109)
T d1r8da_ 29 NPSALTDAGYRLYSDADLERLQQILFFKEIGFRLDEIKEMLDH 71 (109)
T ss_dssp CCSEECTTCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHC
T ss_pred CCcccCCcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 3444457889999996665444555678899999999998764
No 4
>d2hi6a1 c.8.2.3 (A:1-132) Hypothetical protein AF0055 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=30.83 E-value=14 Score=30.09 Aligned_cols=27 Identities=15% Similarity=0.053 Sum_probs=21.7
Q ss_pred CCeEEEEecCCCCCCceeeehhHHHHh
Q 013618 109 RDMALILDVARFKYPPHWVPLTLLWEA 135 (439)
Q Consensus 109 sD~VLILDVARfKYPP~WVpl~~L~eA 135 (439)
.+.+|+++..+..--|-||++......
T Consensus 49 ~gkILv~p~~~gSt~~~~vl~~~~~~g 75 (132)
T d2hi6a1 49 AGRILVFPGGKGSTVGSYVLLNLRKNG 75 (132)
T ss_dssp TTSEEEESCCSCCSSCTTHHHHHHHHT
T ss_pred cCcEEEeecCCCCcchHHHHHHHHHcC
Confidence 578999999998888888887776543
No 5
>d2ajta1 b.43.2.2 (A:329-498) L-arabinose isomerase AraA {Escherichia coli [TaxId: 562]}
Probab=30.70 E-value=33 Score=29.28 Aligned_cols=46 Identities=9% Similarity=0.181 Sum_probs=37.3
Q ss_pred CChHHHHHcCCcHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHH
Q 013618 28 EPLEKVKEKGISFGKLVCLAHCAGAKVEAFRTNQSTIDDFRKYIIRC 74 (439)
Q Consensus 28 ~ple~Vk~~GITL~e~~cLA~CnG~~Vq~~r~d~~SldeFR~~V~~~ 74 (439)
-+.+.|...|.+.+++.++|+-.|+++.+.. .+.++.+|++.++-+
T Consensus 119 gaHHtvls~g~~~~~l~d~A~~~gIE~v~I~-~~t~~~~~~~~l~~n 164 (170)
T d2ajta1 119 GAHHTVFSHALNLNDMRQFAEMHDIEITVID-NDTRLPAFKDALRWN 164 (170)
T ss_dssp CCSEEEEESSCCHHHHHHHHHHTTCEEEEES-TTCCHHHHHHHHHHH
T ss_pred CCCeEEEEeccCHHHHHHHHHHhCCEEEEEC-CCCCHHHHHHHHHHH
Confidence 4455566789999999999999999996554 457999999998743
No 6
>d1c4ea_ g.3.4.1 (A:) Gurmarin, a sweet taste-suppressing polypeptide {Gymnema sylvestre [TaxId: 4068]}
Probab=23.11 E-value=8.1 Score=25.25 Aligned_cols=9 Identities=89% Similarity=1.859 Sum_probs=7.7
Q ss_pred cccccCChH
Q 013618 23 MLDCCEPLE 31 (439)
Q Consensus 23 mLdCC~ple 31 (439)
-||||+|+|
T Consensus 14 yldcceple 22 (35)
T d1c4ea_ 14 YLDCCEPLE 22 (35)
T ss_dssp TCCCSSSCC
T ss_pred hhcccChhh
Confidence 479999987
No 7
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.03 E-value=1.1e+02 Score=22.28 Aligned_cols=51 Identities=10% Similarity=0.086 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEEecccccccCCCccccccccccCCCCeEEEE
Q 013618 60 NQSTIDDFRKYIIRCSASEDCHVISSYHRGAFKQTGTGHFSPIGGYHAGRDMALIL 115 (439)
Q Consensus 60 d~~SldeFR~~V~~~~ss~d~~lIVnY~R~~LgQtG~GHFSPIGGYh~~sD~VLIL 115 (439)
...++.++++.|.+...-+-....+-|..+.|. +++ .++.|+-+.+..+.|
T Consensus 30 ~~~tV~~lK~~I~~~~~ip~~~q~Li~~Gk~L~---D~~--tL~dY~I~~gsti~l 80 (86)
T d1zkha1 30 LTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIK---DSN--SLAYYNMANGAVIHL 80 (86)
T ss_dssp TTSBHHHHHHHHHHHTCCCTTTEEEEETTEEEC---TTS--BHHHHTCCTTEEEEE
T ss_pred CCChHHHHHHHHHhhhcCChHHEEEEeCCcCcC---CCC--CHHHcCCCCCCEEEE
Confidence 347999999999998877777788889988884 344 899999999888876
No 8
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=21.90 E-value=18 Score=27.68 Aligned_cols=34 Identities=15% Similarity=0.295 Sum_probs=26.8
Q ss_pred CcccccccccccccCChHHHHHcCCcHHHHHHHH
Q 013618 14 RPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLA 47 (439)
Q Consensus 14 GpWRWf~EsmLdCC~ple~Vk~~GITL~e~~cLA 47 (439)
+..|+|++.-+..=.-+-..++.|++++++..+.
T Consensus 38 ~gyR~Y~~~~l~~l~~I~~lr~~g~sl~eIk~~l 71 (118)
T d1r8ea1 38 TSYRYYTDSQLIHLDLIKSLKYIGTPLEEMKKAQ 71 (118)
T ss_dssp TCCEEEETGGGGHHHHHHHHHHTTCCHHHHHHHT
T ss_pred CCcccccHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 5599999977775555666788999999987764
No 9
>d1of9a_ a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica [TaxId: 5759]}
Probab=21.19 E-value=35 Score=24.22 Aligned_cols=45 Identities=9% Similarity=0.209 Sum_probs=33.3
Q ss_pred HHHHHHHhhhhhhhccCCCCCHHHHHHHHHhcCCcchhhHHhhhe
Q 013618 174 GIAKYLVDEVPKIVKSKDFKDFEEVLTVLFTSLPSNFGEFVKWVA 218 (439)
Q Consensus 174 ~~ak~l~~d~p~ll~~~~~~~~~~vl~~v~~slP~~~~~~ikwv~ 218 (439)
.+.+++++.+-.++++....+|.+.+..+.+.+|+.+...=+.++
T Consensus 6 ~~C~~~v~~~~~l~~~~t~~~I~~~l~~~C~~lp~~~~~~C~~~v 50 (77)
T d1of9a_ 6 NLCTGLINTLENLLTTKGADKVKDYISSLCNKASGFIATLCTKVL 50 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCSHHHHHHHHHHHTTCSSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHCChHHHHHhHHHH
Confidence 455677777767776555567999999999999998886554444
No 10
>d1tz9a_ c.1.15.6 (A:) Mannonate dehydratase UxuA {Enterococcus faecalis (Streptococcus faecalis) [TaxId: 1351]}
Probab=21.03 E-value=1.1e+02 Score=28.06 Aligned_cols=70 Identities=17% Similarity=0.343 Sum_probs=41.3
Q ss_pred CcccccccccccccCChHHHHHc-CCc----------------HH---HHHHHHHhcCCeEEEEecCC------------
Q 013618 14 RPWRWFDESMLDCCEPLEKVKEK-GIS----------------FG---KLVCLAHCAGAKVEAFRTNQ------------ 61 (439)
Q Consensus 14 GpWRWf~EsmLdCC~ple~Vk~~-GIT----------------L~---e~~cLA~CnG~~Vq~~r~d~------------ 61 (439)
--||||-+.- ==.+|+.|+.. |+| ++ ++....+.+|++..+.-.-+
T Consensus 3 ~~~rw~g~~~--d~v~L~~i~Q~~G~~~iv~~l~~~~~G~~W~~~~i~~~k~~ie~~GL~~~vvEs~pv~e~Ik~g~~~~ 80 (353)
T d1tz9a_ 3 WGFRWYGAAG--DAIPLKHIRQIPGITGVVGTLLNKLPGDVWTVAEIQALKQSVEQEGLALLGIESVAIHDAIKAGTDQR 80 (353)
T ss_dssp ECCBCCCTTT--CCSCHHHHTTSTTCCEEEECCSSSCTTCCCCHHHHHHHHHHHHHTTCEEEEECSCCCCHHHHHTCSTH
T ss_pred cceeccCCCC--CcccHHHHhhhcCCcchhhcCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEecCCCChHHhhcCCCcH
Confidence 3599998621 13578888885 643 34 44466678999877663211
Q ss_pred -CCHHHHHHHHHHHhcCCCcEEEEEec
Q 013618 62 -STIDDFRKYIIRCSASEDCHVISSYH 87 (439)
Q Consensus 62 -~SldeFR~~V~~~~ss~d~~lIVnY~ 87 (439)
.-++.+.+.|+...+.. .=++.|+
T Consensus 81 ~~~Ien~~~slrnla~aG--I~~icYN 105 (353)
T d1tz9a_ 81 DHYIDNYRQTLRNLGKCG--ISLVCYS 105 (353)
T ss_dssp HHHHHHHHHHHHHHHHTT--CCEEEEC
T ss_pred HHHHHHHHHHHHHHHHcC--CCEEEEE
Confidence 24556666666554332 3344443
Done!