Query 013619
Match_columns 439
No_of_seqs 175 out of 1382
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:41:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013619.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013619hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00112 malate dehydrogenase 100.0 2E-108 5E-113 848.6 43.4 435 4-439 3-444 (444)
2 TIGR01757 Malate-DH_plant mala 100.0 5.5E-92 1.2E-96 717.3 40.3 383 55-439 2-387 (387)
3 PRK05442 malate dehydrogenase; 100.0 5.5E-73 1.2E-77 569.2 34.1 325 93-420 1-326 (326)
4 COG0039 Mdh Malate/lactate deh 100.0 5.4E-72 1.2E-76 553.4 33.7 308 97-420 1-311 (313)
5 TIGR01759 MalateDH-SF1 malate 100.0 1.8E-71 3.8E-76 557.7 34.8 318 94-415 1-322 (323)
6 cd05295 MDH_like Malate dehydr 100.0 8.4E-70 1.8E-74 561.7 34.5 318 92-417 119-451 (452)
7 cd01338 MDH_choloroplast_like 100.0 3.8E-69 8.3E-74 541.1 33.9 320 95-418 1-322 (322)
8 cd05290 LDH_3 A subgroup of L- 100.0 7.2E-69 1.6E-73 535.9 33.1 298 98-413 1-306 (307)
9 cd00704 MDH Malate dehydrogena 100.0 5.3E-69 1.2E-73 540.3 31.5 315 97-416 1-322 (323)
10 KOG1496 Malate dehydrogenase [ 100.0 4.8E-69 1E-73 503.3 25.0 327 93-421 1-331 (332)
11 TIGR01758 MDH_euk_cyt malate d 100.0 1.6E-67 3.5E-72 529.8 32.3 318 98-417 1-323 (324)
12 KOG1495 Lactate dehydrogenase 100.0 1.5E-67 3.3E-72 500.6 28.6 303 95-416 19-330 (332)
13 PLN02602 lactate dehydrogenase 100.0 3.6E-67 7.7E-72 531.2 33.1 325 74-416 14-348 (350)
14 TIGR01771 L-LDH-NAD L-lactate 100.0 5.3E-67 1.2E-71 521.0 31.1 294 101-411 1-299 (299)
15 TIGR01756 LDH_protist lactate 100.0 9.3E-67 2E-71 521.2 31.8 305 113-420 2-312 (313)
16 cd05293 LDH_1 A subgroup of L- 100.0 2.7E-66 6E-71 518.6 34.2 303 95-414 2-311 (312)
17 PRK00066 ldh L-lactate dehydro 100.0 3.7E-66 8.1E-71 518.6 34.7 305 94-416 4-313 (315)
18 PLN00135 malate dehydrogenase 100.0 2.5E-66 5.4E-71 517.0 32.4 302 116-420 2-308 (309)
19 cd01336 MDH_cytoplasmic_cytoso 100.0 4E-66 8.7E-71 520.3 33.0 319 95-416 1-324 (325)
20 cd05291 HicDH_like L-2-hydroxy 100.0 2.7E-64 5.8E-69 503.7 34.7 301 97-414 1-305 (306)
21 cd00300 LDH_like L-lactate deh 100.0 1.5E-63 3.3E-68 497.0 33.3 297 99-413 1-299 (300)
22 PTZ00117 malate dehydrogenase; 100.0 1.2E-61 2.6E-66 487.0 36.2 309 94-420 3-318 (319)
23 cd05292 LDH_2 A subgroup of L- 100.0 3.8E-61 8.3E-66 481.3 33.8 300 97-414 1-306 (308)
24 cd05294 LDH-like_MDH_nadp A la 100.0 1.5E-60 3.1E-65 477.2 32.4 305 97-415 1-308 (309)
25 TIGR01763 MalateDH_bact malate 100.0 2.1E-60 4.4E-65 475.2 33.0 300 96-415 1-304 (305)
26 PTZ00082 L-lactate dehydrogena 100.0 5.8E-60 1.3E-64 474.8 35.6 305 93-415 3-319 (321)
27 cd01337 MDH_glyoxysomal_mitoch 100.0 6.8E-60 1.5E-64 471.0 30.2 290 97-414 1-304 (310)
28 TIGR01772 MDH_euk_gproteo mala 100.0 1.9E-59 4E-64 468.4 30.4 292 98-416 1-306 (312)
29 PRK06223 malate dehydrogenase; 100.0 4.8E-58 1E-62 458.2 33.7 301 96-416 2-306 (307)
30 cd01339 LDH-like_MDH L-lactate 100.0 6.4E-57 1.4E-61 449.2 33.1 295 99-413 1-299 (300)
31 PTZ00325 malate dehydrogenase; 100.0 1.2E-56 2.5E-61 449.7 32.4 300 93-420 5-317 (321)
32 PRK05086 malate dehydrogenase; 100.0 9.5E-55 2.1E-59 435.6 31.7 295 97-419 1-309 (312)
33 PLN00106 malate dehydrogenase 100.0 1.9E-54 4.1E-59 434.0 31.0 292 95-414 17-322 (323)
34 cd00650 LDH_MDH_like NAD-depen 100.0 4.4E-52 9.5E-57 407.0 29.1 258 99-413 1-262 (263)
35 KOG1494 NAD-dependent malate d 100.0 1.9E-40 4.1E-45 317.1 20.8 303 94-421 26-340 (345)
36 PF02866 Ldh_1_C: lactate/mala 100.0 3.6E-36 7.8E-41 277.4 18.6 168 248-419 1-173 (174)
37 cd05197 GH4_glycoside_hydrolas 100.0 3.5E-31 7.6E-36 275.1 29.7 284 97-404 1-379 (425)
38 PRK15076 alpha-galactosidase; 100.0 9.1E-31 2E-35 272.7 29.9 283 96-405 1-374 (431)
39 PF00056 Ldh_1_N: lactate/mala 100.0 2E-32 4.3E-37 244.5 14.6 140 97-245 1-141 (141)
40 cd05296 GH4_P_beta_glucosidase 100.0 4.6E-29 9.9E-34 258.9 32.7 285 97-404 1-368 (419)
41 cd05298 GH4_GlvA_pagL_like Gly 100.0 2.4E-27 5.1E-32 247.0 31.3 282 97-405 1-383 (437)
42 cd05297 GH4_alpha_glucosidase_ 100.0 1.9E-27 4E-32 247.8 30.2 285 97-405 1-377 (423)
43 COG1486 CelF Alpha-galactosida 99.9 2.7E-25 6E-30 227.8 26.4 288 95-405 2-386 (442)
44 PF02056 Glyco_hydro_4: Family 99.7 3.9E-17 8.5E-22 151.3 14.9 156 98-265 1-183 (183)
45 PF03807 F420_oxidored: NADP o 98.0 9.2E-06 2E-10 66.9 6.0 95 98-224 1-96 (96)
46 TIGR01915 npdG NADPH-dependent 98.0 5.4E-05 1.2E-09 72.3 11.1 103 97-226 1-105 (219)
47 PF01210 NAD_Gly3P_dh_N: NAD-d 97.9 6E-05 1.3E-09 68.3 8.3 99 98-222 1-103 (157)
48 PRK08293 3-hydroxybutyryl-CoA 97.8 8.6E-05 1.9E-09 73.8 9.8 104 96-225 3-121 (287)
49 PF02737 3HCDH_N: 3-hydroxyacy 97.8 4.1E-05 8.8E-10 71.2 6.6 101 98-225 1-115 (180)
50 COG2085 Predicted dinucleotide 97.8 0.00033 7.1E-09 66.4 11.8 96 96-225 1-96 (211)
51 PRK07819 3-hydroxybutyryl-CoA 97.8 0.00012 2.5E-09 73.0 9.3 75 94-179 3-91 (286)
52 PF03721 UDPG_MGDP_dh_N: UDP-g 97.8 8.6E-05 1.9E-09 69.4 7.8 105 97-221 1-119 (185)
53 PRK05808 3-hydroxybutyryl-CoA 97.7 0.0001 2.2E-09 72.9 8.8 123 96-246 3-139 (282)
54 PRK06130 3-hydroxybutyryl-CoA 97.7 0.00029 6.3E-09 70.6 11.3 76 94-179 2-86 (311)
55 PRK07066 3-hydroxybutyryl-CoA 97.7 0.0002 4.3E-09 72.6 9.9 124 96-246 7-140 (321)
56 PRK06035 3-hydroxyacyl-CoA deh 97.7 0.00026 5.5E-09 70.5 10.3 102 97-223 4-122 (291)
57 PRK07530 3-hydroxybutyryl-CoA 97.7 0.00018 3.9E-09 71.6 9.1 74 96-180 4-91 (292)
58 COG1004 Ugd Predicted UDP-gluc 97.6 0.00048 1E-08 70.8 11.5 113 97-230 1-129 (414)
59 PLN02545 3-hydroxybutyryl-CoA 97.6 0.00029 6.3E-09 70.2 9.4 74 95-180 3-91 (295)
60 PRK07680 late competence prote 97.5 0.00069 1.5E-08 66.8 10.9 100 97-226 1-100 (273)
61 PRK12439 NAD(P)H-dependent gly 97.5 0.00071 1.5E-08 69.0 10.5 108 93-227 4-116 (341)
62 PRK12491 pyrroline-5-carboxyla 97.5 0.00088 1.9E-08 66.3 10.8 68 97-179 3-70 (272)
63 PRK09260 3-hydroxybutyryl-CoA 97.4 0.001 2.2E-08 66.1 10.8 74 97-180 2-89 (288)
64 PF11975 Glyco_hydro_4C: Famil 97.4 0.00095 2.1E-08 64.4 9.9 66 335-406 139-204 (232)
65 COG0345 ProC Pyrroline-5-carbo 97.4 0.00071 1.5E-08 66.7 9.1 98 96-225 1-98 (266)
66 PRK00094 gpsA NAD(P)H-dependen 97.4 0.0012 2.6E-08 66.1 10.7 105 96-226 1-109 (325)
67 COG1250 FadB 3-hydroxyacyl-CoA 97.3 0.00072 1.6E-08 68.0 8.5 143 96-266 3-177 (307)
68 PRK14620 NAD(P)H-dependent gly 97.3 0.0015 3.3E-08 65.9 10.5 104 97-226 1-110 (326)
69 PLN02353 probable UDP-glucose 97.3 0.0011 2.5E-08 70.6 9.8 123 96-228 1-134 (473)
70 PRK07531 bifunctional 3-hydrox 97.3 0.0016 3.4E-08 69.9 10.7 74 96-179 4-87 (495)
71 TIGR03026 NDP-sugDHase nucleot 97.2 0.002 4.3E-08 67.3 10.8 106 97-222 1-120 (411)
72 PLN02688 pyrroline-5-carboxyla 97.2 0.0024 5.3E-08 62.3 10.4 98 97-226 1-99 (266)
73 PRK07679 pyrroline-5-carboxyla 97.2 0.0028 6.1E-08 62.7 10.6 68 97-179 4-72 (279)
74 PRK11730 fadB multifunctional 97.2 0.0016 3.5E-08 72.8 9.9 121 97-246 314-449 (715)
75 PRK08268 3-hydroxy-acyl-CoA de 97.2 0.0015 3.3E-08 70.2 9.2 75 94-179 5-93 (507)
76 PRK11154 fadJ multifunctional 97.1 0.0018 3.9E-08 72.4 9.7 104 96-226 309-427 (708)
77 PF03446 NAD_binding_2: NAD bi 97.1 0.0018 3.8E-08 59.0 7.9 64 96-179 1-64 (163)
78 TIGR03376 glycerol3P_DH glycer 97.1 0.0046 9.9E-08 63.3 11.4 108 98-222 1-116 (342)
79 TIGR02441 fa_ox_alpha_mit fatt 97.1 0.0021 4.4E-08 72.2 9.7 103 97-226 336-452 (737)
80 PTZ00345 glycerol-3-phosphate 97.1 0.0051 1.1E-07 63.5 11.6 108 93-222 8-129 (365)
81 PRK07634 pyrroline-5-carboxyla 97.1 0.0053 1.2E-07 59.1 11.1 70 95-179 3-73 (245)
82 PF10727 Rossmann-like: Rossma 97.1 0.0014 3.1E-08 57.6 6.5 103 94-230 8-114 (127)
83 PRK12921 2-dehydropantoate 2-r 97.0 0.0031 6.8E-08 62.6 9.6 106 97-230 1-110 (305)
84 PLN03209 translocon at the inn 97.0 0.0043 9.2E-08 67.3 11.0 120 93-223 77-208 (576)
85 PRK06129 3-hydroxyacyl-CoA deh 97.0 0.0038 8.3E-08 62.7 10.1 75 96-180 2-90 (308)
86 PRK06522 2-dehydropantoate 2-r 97.0 0.0036 7.9E-08 62.0 9.7 104 97-230 1-108 (304)
87 PRK14618 NAD(P)H-dependent gly 97.0 0.0038 8.3E-08 63.1 10.0 75 95-179 3-81 (328)
88 TIGR02279 PaaC-3OHAcCoADH 3-hy 97.0 0.0019 4.2E-08 69.4 8.2 74 95-179 4-91 (503)
89 TIGR02440 FadJ fatty oxidation 97.0 0.0033 7.1E-08 70.2 10.2 104 96-226 304-422 (699)
90 TIGR02437 FadB fatty oxidation 97.0 0.0032 6.9E-08 70.5 10.0 104 96-226 313-430 (714)
91 PRK15057 UDP-glucose 6-dehydro 97.0 0.0048 1E-07 64.2 10.6 118 97-231 1-127 (388)
92 PRK11880 pyrroline-5-carboxyla 97.0 0.0051 1.1E-07 60.1 10.2 97 96-226 2-98 (267)
93 PRK06928 pyrroline-5-carboxyla 96.9 0.0076 1.6E-07 59.7 11.3 71 96-180 1-72 (277)
94 PRK08655 prephenate dehydrogen 96.9 0.0098 2.1E-07 62.9 12.3 66 97-180 1-66 (437)
95 COG0240 GpsA Glycerol-3-phosph 96.9 0.0051 1.1E-07 62.2 9.4 111 96-236 1-124 (329)
96 PLN02166 dTDP-glucose 4,6-dehy 96.9 0.011 2.3E-07 62.6 12.1 113 94-223 118-234 (436)
97 PLN02695 GDP-D-mannose-3',5'-e 96.8 0.003 6.4E-08 65.0 7.5 129 73-223 1-137 (370)
98 COG0300 DltE Short-chain dehyd 96.8 0.02 4.4E-07 56.5 12.7 117 94-224 4-144 (265)
99 PRK08229 2-dehydropantoate 2-r 96.8 0.011 2.3E-07 59.9 11.1 105 96-228 2-113 (341)
100 PRK07417 arogenate dehydrogena 96.8 0.0071 1.5E-07 59.9 9.6 65 97-180 1-65 (279)
101 PRK15182 Vi polysaccharide bio 96.7 0.013 2.9E-07 61.6 11.6 75 95-185 5-89 (425)
102 COG1748 LYS9 Saccharopine dehy 96.7 0.0092 2E-07 61.9 10.0 76 96-182 1-78 (389)
103 PRK11064 wecC UDP-N-acetyl-D-m 96.7 0.013 2.8E-07 61.6 11.2 113 96-228 3-126 (415)
104 PRK12549 shikimate 5-dehydroge 96.7 0.0071 1.5E-07 60.3 8.8 74 95-179 126-199 (284)
105 PTZ00431 pyrroline carboxylate 96.7 0.0077 1.7E-07 59.1 8.9 61 97-179 4-64 (260)
106 PRK07502 cyclohexadienyl dehyd 96.6 0.022 4.8E-07 57.0 12.0 68 97-180 7-74 (307)
107 PF01488 Shikimate_DH: Shikima 96.6 0.0058 1.3E-07 54.0 6.8 76 95-183 11-86 (135)
108 KOG1502 Flavonol reductase/cin 96.6 0.019 4E-07 58.2 10.7 121 95-226 5-131 (327)
109 PLN02427 UDP-apiose/xylose syn 96.5 0.0058 1.3E-07 62.9 6.9 115 94-223 12-136 (386)
110 PLN02206 UDP-glucuronate decar 96.4 0.03 6.4E-07 59.3 11.9 113 94-223 117-233 (442)
111 CHL00194 ycf39 Ycf39; Provisio 96.4 0.015 3.2E-07 58.3 9.0 108 97-222 1-109 (317)
112 TIGR03589 PseB UDP-N-acetylglu 96.3 0.018 3.8E-07 58.1 9.2 117 96-222 4-124 (324)
113 PF01118 Semialdhyde_dh: Semia 96.3 0.0061 1.3E-07 52.7 4.8 75 98-181 1-75 (121)
114 KOG2304 3-hydroxyacyl-CoA dehy 96.3 0.0066 1.4E-07 58.2 5.2 108 93-226 8-134 (298)
115 PLN02778 3,5-epimerase/4-reduc 96.3 0.061 1.3E-06 53.7 12.5 88 96-211 9-101 (298)
116 PRK14619 NAD(P)H-dependent gly 96.2 0.02 4.3E-07 57.5 8.9 80 96-224 4-84 (308)
117 PRK14982 acyl-ACP reductase; P 96.2 0.018 3.9E-07 58.9 8.5 97 96-228 155-252 (340)
118 PF01073 3Beta_HSD: 3-beta hyd 96.2 0.016 3.4E-07 57.6 7.8 113 101-225 2-117 (280)
119 COG2910 Putative NADH-flavin r 96.2 0.022 4.7E-07 53.2 7.9 104 97-224 1-106 (211)
120 PRK06476 pyrroline-5-carboxyla 96.1 0.011 2.4E-07 57.7 6.3 69 97-180 1-69 (258)
121 PLN02650 dihydroflavonol-4-red 96.1 0.032 6.8E-07 56.6 9.9 116 96-223 5-128 (351)
122 PRK11908 NAD-dependent epimera 96.1 0.011 2.4E-07 59.8 6.5 108 96-223 1-118 (347)
123 PF02719 Polysacc_synt_2: Poly 96.1 0.0056 1.2E-07 61.2 4.1 122 99-229 1-139 (293)
124 PRK15181 Vi polysaccharide bio 96.1 0.071 1.5E-06 54.1 12.3 117 95-222 14-140 (348)
125 PLN00198 anthocyanidin reducta 96.1 0.03 6.6E-07 56.3 9.3 116 95-223 8-131 (338)
126 cd05213 NAD_bind_Glutamyl_tRNA 96.0 0.032 6.8E-07 56.3 9.1 103 95-228 177-279 (311)
127 PRK05708 2-dehydropantoate 2-r 95.9 0.052 1.1E-06 54.5 10.4 123 96-248 2-127 (305)
128 PLN02662 cinnamyl-alcohol dehy 95.9 0.051 1.1E-06 53.9 10.1 105 96-211 4-116 (322)
129 COG1893 ApbA Ketopantoate redu 95.9 0.024 5.3E-07 57.1 7.7 109 97-234 1-112 (307)
130 cd01065 NAD_bind_Shikimate_DH 95.9 0.035 7.6E-07 49.3 7.9 75 95-183 18-92 (155)
131 PRK10675 UDP-galactose-4-epime 95.9 0.093 2E-06 52.5 11.8 116 97-223 1-124 (338)
132 PF13460 NAD_binding_10: NADH( 95.9 0.017 3.6E-07 52.5 5.8 90 99-222 1-97 (183)
133 PRK08507 prephenate dehydrogen 95.8 0.09 2E-06 51.8 11.2 66 97-180 1-66 (275)
134 PLN02989 cinnamyl-alcohol dehy 95.8 0.063 1.4E-06 53.5 10.2 117 95-223 4-129 (325)
135 KOG1205 Predicted dehydrogenas 95.8 0.05 1.1E-06 54.2 9.1 119 96-228 12-155 (282)
136 PLN02214 cinnamoyl-CoA reducta 95.7 0.064 1.4E-06 54.4 9.9 110 95-222 9-126 (342)
137 COG0287 TyrA Prephenate dehydr 95.7 0.14 3.1E-06 51.0 11.9 109 96-236 3-112 (279)
138 KOG2711 Glycerol-3-phosphate d 95.7 0.13 2.9E-06 52.1 11.6 128 94-242 19-167 (372)
139 PTZ00142 6-phosphogluconate de 95.7 0.059 1.3E-06 57.6 9.7 105 96-229 1-110 (470)
140 TIGR00872 gnd_rel 6-phosphoglu 95.6 0.044 9.5E-07 54.8 8.3 96 97-225 1-96 (298)
141 TIGR01505 tartro_sem_red 2-hyd 95.6 0.041 8.8E-07 54.6 8.0 63 98-180 1-63 (291)
142 TIGR01777 yfcH conserved hypot 95.6 0.028 6E-07 54.7 6.5 96 99-211 1-100 (292)
143 PRK08267 short chain dehydroge 95.6 0.044 9.5E-07 52.7 7.8 117 96-224 1-137 (260)
144 PRK10538 malonic semialdehyde 95.6 0.056 1.2E-06 51.7 8.5 115 97-224 1-135 (248)
145 PLN02896 cinnamyl-alcohol dehy 95.5 0.17 3.7E-06 51.3 12.3 114 95-223 9-138 (353)
146 PRK06545 prephenate dehydrogen 95.5 0.11 2.3E-06 53.5 10.8 68 97-180 1-68 (359)
147 TIGR02371 ala_DH_arch alanine 95.5 0.046 9.9E-07 55.5 8.0 75 94-180 126-200 (325)
148 TIGR03466 HpnA hopanoid-associ 95.5 0.038 8.2E-07 54.7 7.2 111 97-223 1-113 (328)
149 TIGR01745 asd_gamma aspartate- 95.5 0.1 2.2E-06 53.9 10.4 72 97-181 1-73 (366)
150 PRK07102 short chain dehydroge 95.5 0.12 2.5E-06 49.2 10.3 46 96-150 1-46 (243)
151 PRK13304 L-aspartate dehydroge 95.5 0.079 1.7E-06 52.2 9.3 70 96-181 1-70 (265)
152 PLN02240 UDP-glucose 4-epimera 95.4 0.22 4.7E-06 50.2 12.7 118 95-223 4-132 (352)
153 TIGR02622 CDP_4_6_dhtase CDP-g 95.4 0.06 1.3E-06 54.5 8.5 117 96-223 4-127 (349)
154 PRK11559 garR tartronate semia 95.4 0.073 1.6E-06 52.8 8.9 64 97-180 3-66 (296)
155 COG2084 MmsB 3-hydroxyisobutyr 95.4 0.058 1.2E-06 53.9 7.9 66 97-181 1-66 (286)
156 PLN02256 arogenate dehydrogena 95.4 0.24 5.2E-06 49.9 12.5 93 94-223 34-128 (304)
157 COG1086 Predicted nucleoside-d 95.3 0.11 2.3E-06 56.2 10.1 127 93-229 247-387 (588)
158 PRK12746 short chain dehydroge 95.2 0.32 6.8E-06 46.4 12.5 46 97-150 7-52 (254)
159 PRK12939 short chain dehydroge 95.2 0.22 4.8E-06 47.1 11.3 113 96-223 7-143 (250)
160 TIGR03206 benzo_BadH 2-hydroxy 95.2 0.26 5.7E-06 46.7 11.7 46 96-150 3-48 (250)
161 PRK06598 aspartate-semialdehyd 95.2 0.15 3.3E-06 52.7 10.6 73 96-181 1-74 (369)
162 PRK06194 hypothetical protein; 95.2 0.21 4.6E-06 48.7 11.2 46 96-150 6-51 (287)
163 PRK05866 short chain dehydroge 95.2 0.22 4.8E-06 49.4 11.5 112 97-223 41-178 (293)
164 PRK08291 ectoine utilization p 95.1 0.072 1.6E-06 54.2 8.1 75 95-180 131-205 (330)
165 PRK08125 bifunctional UDP-gluc 95.1 0.053 1.1E-06 60.2 7.6 114 93-223 312-432 (660)
166 PRK13394 3-hydroxybutyrate deh 95.1 0.17 3.6E-06 48.4 10.2 114 96-223 7-144 (262)
167 PLN02583 cinnamoyl-CoA reducta 95.1 0.14 3.1E-06 50.8 9.9 117 96-223 6-128 (297)
168 PRK06196 oxidoreductase; Provi 95.1 0.32 6.8E-06 48.6 12.4 114 96-223 26-156 (315)
169 cd05311 NAD_bind_2_malic_enz N 95.0 0.19 4.1E-06 48.5 10.3 101 96-226 25-132 (226)
170 COG4221 Short-chain alcohol de 95.0 0.13 2.9E-06 50.0 9.1 117 97-225 7-142 (246)
171 PRK09987 dTDP-4-dehydrorhamnos 95.0 0.053 1.2E-06 53.9 6.7 99 97-222 1-103 (299)
172 PRK06249 2-dehydropantoate 2-r 95.0 0.072 1.6E-06 53.5 7.7 105 95-228 4-112 (313)
173 TIGR01035 hemA glutamyl-tRNA r 95.0 0.052 1.1E-06 57.0 6.8 104 96-228 180-283 (417)
174 PRK15461 NADH-dependent gamma- 95.0 0.037 8.1E-07 55.3 5.5 65 96-180 1-65 (296)
175 PRK07326 short chain dehydroge 95.0 0.36 7.8E-06 45.4 11.9 45 97-150 7-51 (237)
176 PRK07231 fabG 3-ketoacyl-(acyl 95.0 0.32 6.9E-06 46.1 11.6 46 96-150 5-50 (251)
177 cd01078 NAD_bind_H4MPT_DH NADP 94.9 0.099 2.2E-06 48.7 7.8 75 95-181 27-106 (194)
178 PLN02986 cinnamyl-alcohol dehy 94.9 0.19 4.1E-06 50.1 10.3 114 96-222 5-127 (322)
179 cd01487 E1_ThiF_like E1_ThiF_l 94.9 0.059 1.3E-06 49.8 6.2 32 98-134 1-32 (174)
180 cd00757 ThiF_MoeB_HesA_family 94.9 0.099 2.2E-06 50.2 8.0 79 96-181 21-120 (228)
181 PLN02572 UDP-sulfoquinovose sy 94.9 0.1 2.2E-06 55.2 8.8 26 95-120 46-71 (442)
182 PRK08618 ornithine cyclodeamin 94.9 0.078 1.7E-06 53.8 7.6 75 95-180 126-200 (325)
183 PRK11150 rfaD ADP-L-glycero-D- 94.9 0.2 4.4E-06 49.5 10.5 106 99-223 2-116 (308)
184 PF02558 ApbA: Ketopantoate re 94.9 0.15 3.2E-06 45.2 8.4 120 99-249 1-125 (151)
185 PRK06407 ornithine cyclodeamin 94.9 0.087 1.9E-06 53.0 7.6 75 94-179 115-189 (301)
186 PRK06728 aspartate-semialdehyd 94.8 0.065 1.4E-06 55.0 6.8 76 93-181 2-77 (347)
187 PRK12490 6-phosphogluconate de 94.8 0.15 3.4E-06 50.9 9.4 63 97-179 1-66 (299)
188 PRK07424 bifunctional sterol d 94.8 0.16 3.6E-06 53.2 9.9 103 95-210 177-290 (406)
189 COG1712 Predicted dinucleotide 94.8 0.18 3.9E-06 48.6 9.0 97 97-226 1-97 (255)
190 PRK05650 short chain dehydroge 94.8 0.3 6.4E-06 47.3 11.0 113 97-224 1-137 (270)
191 PRK06141 ornithine cyclodeamin 94.7 0.1 2.2E-06 52.7 7.9 73 95-180 124-197 (314)
192 PLN02657 3,8-divinyl protochlo 94.7 0.56 1.2E-05 48.7 13.6 27 94-120 58-84 (390)
193 PRK07825 short chain dehydroge 94.7 0.51 1.1E-05 45.7 12.5 115 96-224 5-138 (273)
194 PLN00141 Tic62-NAD(P)-related 94.7 0.064 1.4E-06 51.7 6.0 28 93-120 14-41 (251)
195 PRK12429 3-hydroxybutyrate deh 94.7 0.42 9.1E-06 45.4 11.6 114 96-224 4-141 (258)
196 TIGR02992 ectoine_eutC ectoine 94.6 0.11 2.4E-06 52.7 7.9 74 95-180 128-202 (326)
197 PRK07069 short chain dehydroge 94.6 0.53 1.2E-05 44.6 12.2 116 98-224 1-139 (251)
198 PRK07478 short chain dehydroge 94.6 0.56 1.2E-05 44.8 12.5 114 96-224 6-144 (254)
199 PRK07024 short chain dehydroge 94.6 0.26 5.6E-06 47.4 10.1 44 97-149 3-46 (257)
200 PRK08213 gluconate 5-dehydroge 94.6 0.47 1E-05 45.5 11.9 120 95-224 11-150 (259)
201 PRK00258 aroE shikimate 5-dehy 94.6 0.16 3.4E-06 50.4 8.6 74 95-182 122-195 (278)
202 COG0569 TrkA K+ transport syst 94.5 0.039 8.5E-07 53.1 4.1 69 97-181 1-75 (225)
203 PRK08340 glucose-1-dehydrogena 94.5 0.34 7.4E-06 46.6 10.7 77 97-183 1-87 (259)
204 PRK08265 short chain dehydroge 94.5 0.13 2.8E-06 49.8 7.6 45 96-149 6-50 (261)
205 PF02423 OCD_Mu_crystall: Orni 94.5 0.1 2.3E-06 52.7 7.2 73 95-179 127-199 (313)
206 PRK12937 short chain dehydroge 94.5 0.51 1.1E-05 44.6 11.6 29 93-121 2-30 (245)
207 PRK07814 short chain dehydroge 94.5 0.38 8.3E-06 46.4 10.9 118 96-224 10-148 (263)
208 PRK08339 short chain dehydroge 94.4 0.68 1.5E-05 44.9 12.7 114 97-224 9-145 (263)
209 PRK07523 gluconate 5-dehydroge 94.4 0.44 9.6E-06 45.5 11.2 114 96-224 10-147 (255)
210 PRK05671 aspartate-semialdehyd 94.4 0.1 2.2E-06 53.4 7.0 74 94-181 2-75 (336)
211 PRK07904 short chain dehydroge 94.4 0.53 1.1E-05 45.5 11.8 120 95-224 7-147 (253)
212 PRK07340 ornithine cyclodeamin 94.4 0.12 2.6E-06 52.0 7.5 73 94-180 123-196 (304)
213 PF01113 DapB_N: Dihydrodipico 94.4 0.12 2.6E-06 45.0 6.5 74 97-179 1-74 (124)
214 PRK07806 short chain dehydroge 94.4 0.32 7E-06 46.1 10.2 24 97-120 7-30 (248)
215 PRK08643 acetoin reductase; Va 94.4 0.46 1E-05 45.4 11.3 118 97-224 3-140 (256)
216 PRK12825 fabG 3-ketoacyl-(acyl 94.4 0.79 1.7E-05 43.0 12.7 26 96-121 6-31 (249)
217 PRK09599 6-phosphogluconate de 94.4 0.25 5.4E-06 49.4 9.6 63 97-179 1-66 (301)
218 PRK07774 short chain dehydroge 94.4 0.47 1E-05 45.0 11.1 46 96-150 6-51 (250)
219 PLN02383 aspartate semialdehyd 94.4 0.089 1.9E-06 54.0 6.4 73 95-181 6-78 (344)
220 PRK05653 fabG 3-ketoacyl-(acyl 94.3 0.3 6.6E-06 45.8 9.7 46 96-150 5-50 (246)
221 PLN02780 ketoreductase/ oxidor 94.3 0.54 1.2E-05 47.4 12.0 47 96-151 53-99 (320)
222 PRK07832 short chain dehydroge 94.3 0.7 1.5E-05 44.8 12.4 119 97-225 1-140 (272)
223 PRK07454 short chain dehydroge 94.3 0.68 1.5E-05 43.8 12.0 115 95-224 5-143 (241)
224 TIGR02354 thiF_fam2 thiamine b 94.3 0.11 2.3E-06 49.2 6.3 34 95-133 20-53 (200)
225 PRK09186 flagellin modificatio 94.2 0.49 1.1E-05 45.1 11.1 46 96-150 4-49 (256)
226 PRK14806 bifunctional cyclohex 94.2 0.2 4.3E-06 56.3 9.5 94 97-222 4-97 (735)
227 PRK07666 fabG 3-ketoacyl-(acyl 94.2 0.7 1.5E-05 43.6 11.9 75 96-183 7-95 (239)
228 COG0451 WcaG Nucleoside-diphos 94.2 0.17 3.8E-06 49.5 8.0 101 97-210 1-105 (314)
229 TIGR01181 dTDP_gluc_dehyt dTDP 94.2 0.13 2.9E-06 50.3 7.2 116 98-222 1-124 (317)
230 PRK08085 gluconate 5-dehydroge 94.2 0.4 8.6E-06 45.9 10.2 47 96-151 9-55 (254)
231 PRK07890 short chain dehydroge 94.2 0.52 1.1E-05 44.9 11.0 78 96-183 5-93 (258)
232 TIGR01214 rmlD dTDP-4-dehydror 94.2 0.15 3.2E-06 49.8 7.3 96 98-223 1-100 (287)
233 PRK12827 short chain dehydroge 94.1 1.1 2.3E-05 42.3 13.0 119 96-224 6-148 (249)
234 TIGR02415 23BDH acetoin reduct 94.1 0.34 7.4E-06 46.1 9.7 112 98-223 2-137 (254)
235 PRK00045 hemA glutamyl-tRNA re 94.1 0.16 3.5E-06 53.5 8.0 106 95-228 181-286 (423)
236 PRK06180 short chain dehydroge 94.1 0.23 4.9E-06 48.5 8.6 40 96-144 4-43 (277)
237 TIGR00873 gnd 6-phosphoglucona 94.1 0.45 9.7E-06 50.9 11.4 103 98-230 1-108 (467)
238 PF00899 ThiF: ThiF family; I 94.1 0.17 3.6E-06 44.4 6.9 78 96-180 2-100 (135)
239 PRK06197 short chain dehydroge 94.1 0.6 1.3E-05 46.2 11.6 116 96-224 16-153 (306)
240 PRK13940 glutamyl-tRNA reducta 94.1 0.1 2.2E-06 54.8 6.3 73 96-183 181-253 (414)
241 PRK12480 D-lactate dehydrogena 94.0 0.25 5.5E-06 50.3 8.9 91 96-224 146-236 (330)
242 PLN00203 glutamyl-tRNA reducta 94.0 0.15 3.3E-06 55.0 7.7 74 96-182 266-339 (519)
243 PF01370 Epimerase: NAD depend 93.9 0.051 1.1E-06 51.0 3.5 159 99-279 1-174 (236)
244 PRK06198 short chain dehydroge 93.9 1 2.2E-05 43.1 12.6 46 96-149 6-51 (260)
245 PRK06124 gluconate 5-dehydroge 93.9 0.45 9.8E-06 45.4 10.2 120 94-225 9-149 (256)
246 PLN02712 arogenate dehydrogena 93.9 0.31 6.8E-06 54.3 10.1 65 94-179 50-115 (667)
247 PRK05565 fabG 3-ketoacyl-(acyl 93.9 1.2 2.6E-05 41.8 13.0 47 96-150 5-51 (247)
248 PRK08945 putative oxoacyl-(acy 93.9 0.98 2.1E-05 42.9 12.4 119 95-224 11-153 (247)
249 PRK05717 oxidoreductase; Valid 93.9 0.14 3E-06 49.1 6.5 25 96-120 10-34 (255)
250 PRK06139 short chain dehydroge 93.9 0.45 9.7E-06 48.3 10.4 115 96-223 7-143 (330)
251 PRK06823 ornithine cyclodeamin 93.9 0.23 4.9E-06 50.3 8.2 75 94-180 126-200 (315)
252 PRK07589 ornithine cyclodeamin 93.8 0.19 4E-06 51.7 7.6 74 95-180 128-201 (346)
253 PRK07453 protochlorophyllide o 93.8 0.58 1.3E-05 46.8 11.1 46 96-150 6-51 (322)
254 PRK06181 short chain dehydroge 93.8 0.88 1.9E-05 43.6 11.9 74 97-183 2-89 (263)
255 PRK08040 putative semialdehyde 93.8 0.13 2.9E-06 52.5 6.4 73 95-181 3-75 (336)
256 PRK12826 3-ketoacyl-(acyl-carr 93.8 1.2 2.5E-05 42.1 12.6 46 96-150 6-51 (251)
257 TIGR02356 adenyl_thiF thiazole 93.8 0.3 6.4E-06 46.2 8.3 79 95-180 20-119 (202)
258 PRK12384 sorbitol-6-phosphate 93.8 0.82 1.8E-05 43.7 11.6 116 97-224 3-142 (259)
259 PRK08644 thiamine biosynthesis 93.8 0.24 5.1E-06 47.3 7.7 35 95-134 27-61 (212)
260 PLN02350 phosphogluconate dehy 93.7 0.3 6.6E-06 52.5 9.3 101 95-224 5-109 (493)
261 PRK06138 short chain dehydroge 93.7 0.82 1.8E-05 43.3 11.4 45 96-149 5-49 (252)
262 PRK07109 short chain dehydroge 93.7 0.88 1.9E-05 46.1 12.2 113 97-224 9-145 (334)
263 cd01483 E1_enzyme_family Super 93.7 0.29 6.3E-06 43.2 7.7 77 98-181 1-98 (143)
264 TIGR01809 Shik-DH-AROM shikima 93.7 0.16 3.4E-06 50.6 6.6 71 96-180 125-198 (282)
265 PRK09072 short chain dehydroge 93.7 0.63 1.4E-05 44.8 10.7 75 95-183 4-91 (263)
266 PRK06199 ornithine cyclodeamin 93.7 0.23 4.9E-06 51.7 7.9 76 95-179 154-230 (379)
267 PRK12936 3-ketoacyl-(acyl-carr 93.6 0.27 5.8E-06 46.4 7.9 115 96-225 6-141 (245)
268 PRK12829 short chain dehydroge 93.6 0.9 1.9E-05 43.4 11.6 27 95-121 10-36 (264)
269 PRK11199 tyrA bifunctional cho 93.6 0.25 5.4E-06 51.2 8.2 79 96-223 98-176 (374)
270 PLN02712 arogenate dehydrogena 93.6 0.68 1.5E-05 51.7 12.0 94 95-224 368-462 (667)
271 PRK06172 short chain dehydroge 93.6 0.82 1.8E-05 43.6 11.2 46 96-150 7-52 (253)
272 PRK05876 short chain dehydroge 93.6 0.78 1.7E-05 44.9 11.3 113 97-223 7-143 (275)
273 PF03435 Saccharop_dh: Sacchar 93.6 0.11 2.3E-06 53.7 5.4 74 99-183 1-78 (386)
274 PRK05867 short chain dehydroge 93.5 1.1 2.4E-05 42.8 12.0 75 96-183 9-97 (253)
275 PRK06182 short chain dehydroge 93.5 0.26 5.7E-06 47.8 7.8 110 96-223 3-133 (273)
276 cd01485 E1-1_like Ubiquitin ac 93.5 0.41 8.9E-06 45.1 8.7 32 96-132 19-50 (198)
277 KOG0409 Predicted dehydrogenas 93.5 0.25 5.5E-06 49.4 7.5 103 96-221 35-154 (327)
278 COG0677 WecC UDP-N-acetyl-D-ma 93.5 0.65 1.4E-05 48.3 10.7 77 96-185 9-97 (436)
279 PRK06949 short chain dehydroge 93.5 0.8 1.7E-05 43.6 11.0 46 96-150 9-54 (258)
280 PRK14874 aspartate-semialdehyd 93.5 0.17 3.6E-06 51.6 6.5 72 96-181 1-72 (334)
281 KOG1429 dTDP-glucose 4-6-dehyd 93.5 0.1 2.2E-06 51.9 4.7 75 96-182 27-101 (350)
282 PRK07067 sorbitol dehydrogenas 93.5 0.36 7.7E-06 46.3 8.5 116 97-224 7-141 (257)
283 PRK09291 short chain dehydroge 93.5 1.2 2.7E-05 42.3 12.2 24 97-120 3-26 (257)
284 PLN02253 xanthoxin dehydrogena 93.5 1.3 2.8E-05 43.1 12.5 115 96-224 18-156 (280)
285 PRK08703 short chain dehydroge 93.4 1.1 2.4E-05 42.4 11.8 45 97-150 7-51 (239)
286 PRK07201 short chain dehydroge 93.4 0.82 1.8E-05 50.3 12.3 103 97-211 1-115 (657)
287 PRK09242 tropinone reductase; 93.4 1.3 2.8E-05 42.3 12.3 115 96-223 9-147 (257)
288 PRK06482 short chain dehydroge 93.4 0.29 6.2E-06 47.5 7.8 24 97-120 3-26 (276)
289 PRK05884 short chain dehydroge 93.4 0.3 6.5E-06 46.2 7.8 44 97-149 1-44 (223)
290 COG1090 Predicted nucleoside-d 93.4 0.58 1.3E-05 46.5 9.7 94 99-211 1-99 (297)
291 PLN02260 probable rhamnose bio 93.4 0.71 1.5E-05 51.2 11.8 91 93-211 377-472 (668)
292 PLN02968 Probable N-acetyl-gam 93.4 0.14 3E-06 53.3 5.7 27 95-121 37-63 (381)
293 PRK08300 acetaldehyde dehydrog 93.4 1.6 3.6E-05 44.0 13.2 24 95-119 3-26 (302)
294 PRK08063 enoyl-(acyl carrier p 93.4 1.3 2.9E-05 41.9 12.2 46 97-150 5-50 (250)
295 PRK07677 short chain dehydroge 93.3 1.4 3E-05 42.1 12.4 113 97-223 2-138 (252)
296 COG0373 HemA Glutamyl-tRNA red 93.3 0.18 3.9E-06 52.9 6.4 73 95-183 177-249 (414)
297 COG0136 Asd Aspartate-semialde 93.3 0.27 5.8E-06 50.0 7.5 72 96-181 1-75 (334)
298 PRK05993 short chain dehydroge 93.2 0.24 5.3E-06 48.3 7.1 109 97-223 5-135 (277)
299 PRK06128 oxidoreductase; Provi 93.2 1.9 4.1E-05 42.7 13.5 117 97-224 56-193 (300)
300 PRK05855 short chain dehydroge 93.2 0.89 1.9E-05 48.7 11.9 115 96-224 315-453 (582)
301 PRK08219 short chain dehydroge 93.2 0.53 1.2E-05 43.8 9.0 24 96-119 3-26 (227)
302 TIGR01472 gmd GDP-mannose 4,6- 93.2 0.28 6.1E-06 49.4 7.6 24 97-120 1-24 (343)
303 PRK13302 putative L-aspartate 93.1 0.17 3.6E-06 50.1 5.7 72 95-181 5-76 (271)
304 PRK00048 dihydrodipicolinate r 93.1 1.5 3.2E-05 43.0 12.3 67 96-179 1-67 (257)
305 PLN02686 cinnamoyl-CoA reducta 93.1 0.3 6.6E-06 50.1 7.7 119 94-223 51-180 (367)
306 PRK06101 short chain dehydroge 93.0 0.31 6.7E-06 46.4 7.3 40 97-145 2-41 (240)
307 PRK07035 short chain dehydroge 93.0 1.6 3.6E-05 41.4 12.4 46 97-151 9-54 (252)
308 PRK05557 fabG 3-ketoacyl-(acyl 93.0 2.1 4.5E-05 40.1 12.9 26 95-120 4-29 (248)
309 PRK06940 short chain dehydroge 93.0 0.94 2E-05 44.3 10.8 86 99-198 5-101 (275)
310 PRK12747 short chain dehydroge 93.0 1.9 4.1E-05 41.1 12.7 47 96-150 4-50 (252)
311 cd05312 NAD_bind_1_malic_enz N 92.9 0.079 1.7E-06 52.7 3.0 131 97-252 26-171 (279)
312 PRK07063 short chain dehydroge 92.9 1.5 3.2E-05 42.0 11.9 116 96-224 7-146 (260)
313 PRK08324 short chain dehydroge 92.9 1.2 2.7E-05 49.7 12.7 115 97-223 423-558 (681)
314 PRK05479 ketol-acid reductoiso 92.8 0.54 1.2E-05 48.0 9.0 66 94-179 15-80 (330)
315 PRK12828 short chain dehydroge 92.8 0.4 8.6E-06 44.9 7.6 46 96-150 7-52 (239)
316 TIGR00507 aroE shikimate 5-deh 92.8 0.5 1.1E-05 46.5 8.5 73 95-182 116-188 (270)
317 PRK07074 short chain dehydroge 92.8 1.9 4.1E-05 41.1 12.4 44 97-149 3-46 (257)
318 PRK06125 short chain dehydroge 92.7 2.2 4.8E-05 40.9 12.9 117 96-223 7-140 (259)
319 PRK05865 hypothetical protein; 92.7 0.47 1E-05 54.2 9.3 103 97-225 1-105 (854)
320 smart00859 Semialdhyde_dh Semi 92.7 0.53 1.1E-05 40.3 7.6 23 98-120 1-23 (122)
321 PRK09135 pteridine reductase; 92.7 0.73 1.6E-05 43.4 9.3 25 96-120 6-30 (249)
322 PRK08263 short chain dehydroge 92.7 0.26 5.7E-06 47.9 6.4 114 97-223 4-136 (275)
323 PRK05875 short chain dehydroge 92.7 2.4 5.2E-05 41.0 13.1 46 96-150 7-52 (276)
324 PRK06718 precorrin-2 dehydroge 92.7 0.27 5.9E-06 46.5 6.2 69 95-181 9-79 (202)
325 PRK12744 short chain dehydroge 92.6 1.8 3.9E-05 41.5 12.0 26 96-121 8-33 (257)
326 PRK08277 D-mannonate oxidoredu 92.6 1.5 3.3E-05 42.5 11.6 46 96-150 10-55 (278)
327 PRK08251 short chain dehydroge 92.6 2.7 5.8E-05 39.8 13.1 77 97-184 3-93 (248)
328 PLN02653 GDP-mannose 4,6-dehyd 92.6 1.1 2.4E-05 45.1 10.9 25 96-120 6-30 (340)
329 PRK10084 dTDP-glucose 4,6 dehy 92.5 1.3 2.9E-05 44.5 11.5 105 97-211 1-114 (352)
330 KOG1430 C-3 sterol dehydrogena 92.5 0.38 8.3E-06 49.6 7.5 112 94-211 2-116 (361)
331 PRK06924 short chain dehydroge 92.5 0.23 5E-06 47.3 5.6 26 96-121 1-26 (251)
332 PRK07985 oxidoreductase; Provi 92.5 1.6 3.4E-05 43.3 11.7 25 97-121 50-74 (294)
333 PRK07097 gluconate 5-dehydroge 92.5 1.7 3.6E-05 42.0 11.6 115 96-225 10-148 (265)
334 PRK06153 hypothetical protein; 92.5 0.2 4.3E-06 52.0 5.3 56 73-133 150-208 (393)
335 TIGR03325 BphB_TodD cis-2,3-di 92.4 0.22 4.8E-06 48.0 5.4 42 95-145 4-45 (262)
336 PRK05599 hypothetical protein; 92.4 1.2 2.6E-05 42.7 10.4 118 97-225 1-139 (246)
337 PRK08642 fabG 3-ketoacyl-(acyl 92.4 0.64 1.4E-05 44.1 8.5 26 95-120 4-29 (253)
338 PRK07062 short chain dehydroge 92.4 2.2 4.8E-05 41.0 12.3 115 97-224 9-147 (265)
339 PRK06500 short chain dehydroge 92.3 0.56 1.2E-05 44.4 8.0 43 97-148 7-49 (249)
340 cd01491 Ube1_repeat1 Ubiquitin 92.3 0.58 1.3E-05 46.8 8.3 77 97-180 20-113 (286)
341 TIGR02853 spore_dpaA dipicolin 92.3 0.89 1.9E-05 45.4 9.7 67 96-180 151-217 (287)
342 PRK06057 short chain dehydroge 92.2 2.1 4.6E-05 40.9 12.0 45 96-149 7-51 (255)
343 PRK08664 aspartate-semialdehyd 92.2 0.62 1.3E-05 47.8 8.7 25 96-120 3-27 (349)
344 PRK06046 alanine dehydrogenase 92.2 0.45 9.7E-06 48.3 7.5 74 95-180 128-201 (326)
345 TIGR01963 PHB_DH 3-hydroxybuty 92.2 2.1 4.6E-05 40.5 11.8 74 97-183 2-89 (255)
346 PRK07576 short chain dehydroge 92.1 1.6 3.4E-05 42.3 11.0 46 96-150 9-54 (264)
347 PF04321 RmlD_sub_bind: RmlD s 92.1 0.52 1.1E-05 46.7 7.7 98 97-222 1-100 (286)
348 TIGR01832 kduD 2-deoxy-D-gluco 92.1 1.6 3.6E-05 41.3 10.9 26 96-121 5-30 (248)
349 TIGR01724 hmd_rel H2-forming N 92.1 0.91 2E-05 46.1 9.3 68 97-180 1-89 (341)
350 PRK15059 tartronate semialdehy 92.0 0.24 5.1E-06 49.6 5.2 63 97-180 1-63 (292)
351 PRK12823 benD 1,6-dihydroxycyc 92.0 2.6 5.6E-05 40.3 12.3 26 96-121 8-33 (260)
352 TIGR00465 ilvC ketol-acid redu 92.0 0.81 1.8E-05 46.4 9.0 65 96-180 3-67 (314)
353 PRK06200 2,3-dihydroxy-2,3-dih 92.0 0.51 1.1E-05 45.4 7.3 45 96-149 6-50 (263)
354 PLN02260 probable rhamnose bio 91.9 1.3 2.7E-05 49.3 11.3 115 95-223 5-132 (668)
355 PRK12935 acetoacetyl-CoA reduc 91.9 1.9 4.1E-05 40.8 11.1 47 96-150 6-52 (247)
356 PRK06179 short chain dehydroge 91.9 1.4 3.1E-05 42.4 10.4 25 96-120 4-28 (270)
357 COG2423 Predicted ornithine cy 91.9 0.39 8.4E-06 49.0 6.6 74 95-179 129-202 (330)
358 PRK12743 oxidoreductase; Provi 91.9 3 6.6E-05 39.9 12.6 25 97-121 3-27 (256)
359 PRK05786 fabG 3-ketoacyl-(acyl 91.9 1.3 2.8E-05 41.7 9.8 46 96-150 5-50 (238)
360 PRK09134 short chain dehydroge 91.9 1.7 3.8E-05 41.6 10.9 26 95-120 8-33 (258)
361 cd01492 Aos1_SUMO Ubiquitin ac 91.9 0.38 8.2E-06 45.4 6.1 32 96-132 21-52 (197)
362 PRK10217 dTDP-glucose 4,6-dehy 91.9 0.36 7.7E-06 48.8 6.4 103 96-210 1-114 (355)
363 COG0289 DapB Dihydrodipicolina 91.8 1.7 3.7E-05 42.9 10.7 74 95-178 1-75 (266)
364 PF00185 OTCace: Aspartate/orn 91.8 0.66 1.4E-05 42.2 7.4 74 96-180 2-81 (158)
365 PRK14027 quinate/shikimate deh 91.8 0.35 7.6E-06 48.3 6.1 74 96-180 127-202 (283)
366 PRK08416 7-alpha-hydroxysteroi 91.8 2 4.4E-05 41.3 11.3 47 96-150 8-54 (260)
367 PRK06901 aspartate-semialdehyd 91.8 0.87 1.9E-05 46.2 8.9 69 96-181 3-73 (322)
368 PRK12475 thiamine/molybdopteri 91.8 0.56 1.2E-05 48.0 7.7 33 96-133 24-56 (338)
369 PRK12320 hypothetical protein; 91.8 0.29 6.2E-06 54.8 6.0 100 97-222 1-101 (699)
370 PRK06947 glucose-1-dehydrogena 91.8 1.8 4E-05 40.9 10.9 46 97-150 3-48 (248)
371 PRK08217 fabG 3-ketoacyl-(acyl 91.8 2.5 5.5E-05 39.8 11.8 46 96-150 5-50 (253)
372 PRK13243 glyoxylate reductase; 91.7 0.31 6.8E-06 49.7 5.8 100 96-231 150-251 (333)
373 PRK08862 short chain dehydroge 91.7 2.9 6.2E-05 39.8 12.2 46 96-150 5-50 (227)
374 TIGR02197 heptose_epim ADP-L-g 91.7 0.66 1.4E-05 45.6 8.0 108 99-223 1-114 (314)
375 PF02826 2-Hacid_dh_C: D-isome 91.7 0.42 9.2E-06 44.0 6.1 93 96-224 36-129 (178)
376 PRK06701 short chain dehydroge 91.7 2.6 5.6E-05 41.6 12.1 138 74-224 20-183 (290)
377 COG1091 RfbD dTDP-4-dehydrorha 91.6 0.44 9.6E-06 47.5 6.5 95 97-222 1-99 (281)
378 PRK06935 2-deoxy-D-gluconate 3 91.6 2.2 4.8E-05 40.8 11.3 26 96-121 15-40 (258)
379 PRK06113 7-alpha-hydroxysteroi 91.6 2.2 4.7E-05 40.8 11.3 47 96-151 11-57 (255)
380 PRK06077 fabG 3-ketoacyl-(acyl 91.5 2 4.3E-05 40.6 10.8 26 96-121 6-31 (252)
381 PRK05872 short chain dehydroge 91.5 2.1 4.6E-05 42.2 11.3 76 96-183 9-96 (296)
382 PRK08818 prephenate dehydrogen 91.4 1.1 2.3E-05 46.6 9.3 87 95-223 3-89 (370)
383 PF01408 GFO_IDH_MocA: Oxidore 91.4 0.49 1.1E-05 39.9 5.8 67 97-180 1-70 (120)
384 PRK08589 short chain dehydroge 91.4 3.5 7.6E-05 40.0 12.6 116 96-224 6-142 (272)
385 PRK06914 short chain dehydroge 91.3 2.1 4.6E-05 41.4 11.0 44 97-149 4-47 (280)
386 PRK07201 short chain dehydroge 91.3 1.8 3.9E-05 47.6 11.6 112 97-223 372-509 (657)
387 PRK12742 oxidoreductase; Provi 91.3 1.1 2.5E-05 42.0 8.8 26 96-121 6-31 (237)
388 PRK00436 argC N-acetyl-gamma-g 91.3 0.38 8.3E-06 49.2 5.9 25 96-120 2-26 (343)
389 PF03949 Malic_M: Malic enzyme 91.2 0.94 2E-05 44.6 8.3 131 97-251 26-171 (255)
390 PRK05597 molybdopterin biosynt 91.2 0.51 1.1E-05 48.6 6.7 78 96-180 28-126 (355)
391 TIGR01296 asd_B aspartate-semi 91.2 0.32 7E-06 49.7 5.2 70 98-181 1-70 (339)
392 PRK08936 glucose-1-dehydrogena 91.1 3.1 6.7E-05 39.9 11.8 26 96-121 7-32 (261)
393 PRK08628 short chain dehydroge 91.1 4 8.7E-05 38.9 12.6 25 97-121 8-32 (258)
394 PRK07688 thiamine/molybdopteri 91.1 0.76 1.7E-05 47.0 7.8 33 96-133 24-56 (339)
395 TIGR01746 Thioester-redct thio 91.1 2.4 5.1E-05 42.2 11.4 106 98-211 1-126 (367)
396 TIGR01179 galE UDP-glucose-4-e 91.1 1.9 4.2E-05 42.2 10.6 109 98-222 1-120 (328)
397 PRK05690 molybdopterin biosynt 91.0 0.9 2E-05 44.3 8.0 25 96-121 32-56 (245)
398 PRK07060 short chain dehydroge 91.0 1.6 3.4E-05 41.2 9.5 41 96-145 9-49 (245)
399 PRK14106 murD UDP-N-acetylmura 90.9 0.8 1.7E-05 48.1 8.1 111 96-225 5-117 (450)
400 COG0078 ArgF Ornithine carbamo 90.9 1.2 2.6E-05 44.7 8.7 76 95-179 152-228 (310)
401 PRK12557 H(2)-dependent methyl 90.9 1.7 3.8E-05 44.5 10.3 56 109-179 32-88 (342)
402 PRK08264 short chain dehydroge 90.9 2.4 5.1E-05 39.9 10.6 27 95-121 5-31 (238)
403 PRK12749 quinate/shikimate deh 90.8 0.93 2E-05 45.3 8.0 73 96-180 124-204 (288)
404 PRK15469 ghrA bifunctional gly 90.8 0.38 8.3E-06 48.6 5.3 91 96-222 136-226 (312)
405 TIGR02355 moeB molybdopterin s 90.8 0.89 1.9E-05 44.2 7.7 25 96-121 24-48 (240)
406 PRK08278 short chain dehydroge 90.8 4.5 9.7E-05 39.3 12.7 25 96-120 6-30 (273)
407 PRK11863 N-acetyl-gamma-glutam 90.6 1.6 3.4E-05 44.3 9.4 26 96-121 2-27 (313)
408 PRK07775 short chain dehydroge 90.6 3 6.5E-05 40.5 11.3 26 96-121 10-35 (274)
409 PRK07574 formate dehydrogenase 90.5 0.9 1.9E-05 47.4 7.8 101 97-231 193-295 (385)
410 TIGR01692 HIBADH 3-hydroxyisob 90.5 0.86 1.9E-05 45.2 7.4 60 101-180 1-60 (288)
411 COG0169 AroE Shikimate 5-dehyd 90.4 0.9 2E-05 45.4 7.5 72 96-180 126-198 (283)
412 cd01075 NAD_bind_Leu_Phe_Val_D 90.4 0.99 2.1E-05 42.6 7.4 67 95-181 27-94 (200)
413 PRK08762 molybdopterin biosynt 90.3 0.93 2E-05 46.9 7.8 79 95-180 134-233 (376)
414 PRK08605 D-lactate dehydrogena 90.3 0.67 1.5E-05 47.2 6.6 63 96-180 146-208 (332)
415 PRK15116 sulfur acceptor prote 90.2 1.1 2.4E-05 44.4 7.9 35 95-134 29-63 (268)
416 PRK08306 dipicolinate synthase 90.0 1.1 2.3E-05 45.1 7.6 67 96-180 152-218 (296)
417 TIGR01850 argC N-acetyl-gamma- 89.9 0.6 1.3E-05 47.9 6.0 25 97-121 1-25 (346)
418 PRK08226 short chain dehydroge 89.9 3.5 7.7E-05 39.4 11.1 26 96-121 6-31 (263)
419 cd00762 NAD_bind_malic_enz NAD 89.9 0.26 5.7E-06 48.4 3.1 134 97-254 26-174 (254)
420 PRK12938 acetyacetyl-CoA reduc 89.8 4.9 0.00011 37.9 11.8 24 97-120 4-27 (246)
421 PRK05693 short chain dehydroge 89.6 3.7 7.9E-05 39.7 11.0 25 96-120 1-25 (274)
422 TIGR01829 AcAcCoA_reduct aceto 89.5 5.5 0.00012 37.3 11.9 24 98-121 2-25 (242)
423 PRK07831 short chain dehydroge 89.5 5.5 0.00012 38.2 12.0 46 96-150 17-63 (262)
424 PRK06114 short chain dehydroge 89.5 3.5 7.6E-05 39.4 10.6 26 96-121 8-33 (254)
425 cd00755 YgdL_like Family of ac 89.4 0.89 1.9E-05 44.1 6.4 33 96-133 11-43 (231)
426 PRK04207 glyceraldehyde-3-phos 89.3 1.1 2.3E-05 46.0 7.1 78 96-181 1-87 (341)
427 PRK08269 3-hydroxybutyryl-CoA 89.3 2.2 4.9E-05 43.1 9.4 55 159-229 64-120 (314)
428 PRK05600 thiamine biosynthesis 89.2 1 2.2E-05 46.7 7.0 25 96-121 41-65 (370)
429 TIGR01470 cysG_Nterm siroheme 89.2 1.3 2.9E-05 41.9 7.3 68 96-181 9-78 (205)
430 PRK13303 L-aspartate dehydroge 89.2 3 6.4E-05 41.1 10.0 24 96-120 1-24 (265)
431 KOG1014 17 beta-hydroxysteroid 89.2 0.57 1.2E-05 47.1 4.9 115 99-225 52-189 (312)
432 PRK13301 putative L-aspartate 89.2 2 4.4E-05 42.5 8.7 98 97-228 3-101 (267)
433 PRK05854 short chain dehydroge 89.1 6.5 0.00014 39.3 12.6 46 96-150 14-59 (313)
434 cd00401 AdoHcyase S-adenosyl-L 89.0 1.7 3.7E-05 45.8 8.5 91 95-224 201-291 (413)
435 PF00106 adh_short: short chai 88.9 4 8.7E-05 35.9 9.9 115 98-226 2-138 (167)
436 PRK12367 short chain dehydroge 88.9 2.4 5.2E-05 41.0 9.0 24 97-120 15-38 (245)
437 TIGR02632 RhaD_aldol-ADH rhamn 88.8 1.7 3.6E-05 48.7 8.8 45 97-150 415-459 (676)
438 PRK08223 hypothetical protein; 88.8 1.6 3.4E-05 43.8 7.7 33 96-133 27-59 (287)
439 PLN02928 oxidoreductase family 88.8 0.75 1.6E-05 47.2 5.7 103 97-223 160-263 (347)
440 PLN03129 NADP-dependent malic 88.8 0.36 7.9E-06 52.5 3.5 132 96-254 321-469 (581)
441 PRK12824 acetoacetyl-CoA reduc 88.8 8 0.00017 36.2 12.4 24 97-120 3-26 (245)
442 PRK15438 erythronate-4-phospha 88.7 0.81 1.8E-05 47.6 5.9 61 95-180 115-175 (378)
443 KOG1201 Hydroxysteroid 17-beta 88.6 3.8 8.3E-05 41.1 10.2 119 95-224 37-174 (300)
444 TIGR01289 LPOR light-dependent 88.6 4.9 0.00011 40.2 11.3 115 97-223 4-143 (314)
445 PRK01710 murD UDP-N-acetylmura 88.4 1.9 4.1E-05 45.7 8.6 98 92-204 10-108 (458)
446 PRK07856 short chain dehydroge 88.4 1.2 2.7E-05 42.4 6.6 26 96-121 6-31 (252)
447 COG0002 ArgC Acetylglutamate s 88.3 0.78 1.7E-05 46.9 5.3 27 95-121 1-27 (349)
448 PRK00257 erythronate-4-phospha 88.2 1.2 2.5E-05 46.5 6.7 60 96-180 116-175 (381)
449 COG3967 DltE Short-chain dehyd 88.2 4.9 0.00011 38.6 10.0 113 96-223 5-139 (245)
450 PRK05476 S-adenosyl-L-homocyst 88.0 1.8 3.9E-05 45.7 8.0 92 95-225 211-302 (425)
451 KOG2666 UDP-glucose/GDP-mannos 87.6 1.8 3.8E-05 43.9 7.1 82 96-185 1-91 (481)
452 PRK06484 short chain dehydroge 87.5 1.6 3.4E-05 46.6 7.4 116 96-223 5-141 (520)
453 PLN03139 formate dehydrogenase 87.5 1.8 3.9E-05 45.2 7.5 102 96-231 199-302 (386)
454 cd01489 Uba2_SUMO Ubiquitin ac 87.4 1.9 4E-05 43.8 7.4 31 98-133 1-31 (312)
455 PRK07877 hypothetical protein; 87.4 1.2 2.7E-05 50.0 6.7 34 96-134 107-140 (722)
456 PRK06484 short chain dehydroge 87.4 1.6 3.4E-05 46.6 7.3 120 95-225 268-403 (520)
457 PRK12548 shikimate 5-dehydroge 87.2 2.3 4.9E-05 42.4 7.8 74 96-180 126-207 (289)
458 TIGR01831 fabG_rel 3-oxoacyl-( 87.1 3.8 8.3E-05 38.5 9.1 23 99-121 1-23 (239)
459 TIGR00978 asd_EA aspartate-sem 87.0 1.2 2.6E-05 45.5 5.9 25 97-121 1-25 (341)
460 TIGR03693 ocin_ThiF_like putat 86.9 4.1 9E-05 44.8 10.0 81 95-183 128-215 (637)
461 PRK09310 aroDE bifunctional 3- 86.9 1.5 3.2E-05 47.0 6.7 67 96-180 332-398 (477)
462 TIGR00670 asp_carb_tr aspartat 86.7 4.5 9.7E-05 40.8 9.7 73 95-179 149-223 (301)
463 COG4007 Predicted dehydrogenas 86.7 7.6 0.00017 38.4 10.7 88 96-210 1-109 (340)
464 PRK09330 cell division protein 86.7 4.5 9.7E-05 42.2 9.9 28 95-123 12-39 (384)
465 PRK06463 fabG 3-ketoacyl-(acyl 86.5 7.2 0.00016 37.2 10.7 25 96-120 7-31 (255)
466 PLN02819 lysine-ketoglutarate 86.5 0.69 1.5E-05 53.9 4.1 78 94-181 567-657 (1042)
467 PLN02996 fatty acyl-CoA reduct 86.3 11 0.00023 40.7 12.9 42 168-210 108-149 (491)
468 TIGR00518 alaDH alanine dehydr 86.3 1.4 3E-05 45.7 5.9 72 95-183 166-241 (370)
469 PRK08177 short chain dehydroge 86.1 1.5 3.3E-05 41.1 5.7 25 96-120 1-25 (225)
470 TIGR00936 ahcY adenosylhomocys 86.0 2.6 5.5E-05 44.3 7.7 91 95-224 194-284 (406)
471 PRK07578 short chain dehydroge 86.0 2 4.4E-05 39.4 6.4 23 97-119 1-23 (199)
472 PTZ00317 NADP-dependent malic 85.9 3.7 7.9E-05 44.7 9.0 137 96-254 297-449 (559)
473 PRK12550 shikimate 5-dehydroge 85.8 1.9 4E-05 42.8 6.3 64 97-180 123-186 (272)
474 PLN02494 adenosylhomocysteinas 85.8 2.6 5.6E-05 45.1 7.7 95 95-228 253-347 (477)
475 PRK07878 molybdopterin biosynt 85.7 2.7 5.9E-05 43.9 7.8 32 96-132 42-73 (392)
476 KOG1203 Predicted dehydrogenas 85.7 2.3 5E-05 44.6 7.1 30 92-121 75-104 (411)
477 COG5322 Predicted dehydrogenas 85.6 1.8 3.9E-05 42.9 5.9 74 97-183 168-241 (351)
478 cd01484 E1-2_like Ubiquitin ac 85.6 3.2 7E-05 40.3 7.7 32 98-134 1-32 (234)
479 PRK07411 hypothetical protein; 85.6 2.6 5.7E-05 43.9 7.6 26 95-121 37-62 (390)
480 PTZ00075 Adenosylhomocysteinas 85.4 2.5 5.4E-05 45.3 7.4 91 95-224 253-343 (476)
481 PRK14192 bifunctional 5,10-met 85.3 2.3 4.9E-05 42.5 6.7 26 95-121 158-184 (283)
482 TIGR01830 3oxo_ACP_reduc 3-oxo 85.3 5.6 0.00012 37.1 9.1 22 99-120 1-22 (239)
483 PRK08993 2-deoxy-D-gluconate 3 85.3 10 0.00022 36.2 11.1 24 97-120 11-34 (253)
484 PRK08303 short chain dehydroge 85.1 11 0.00024 37.6 11.6 25 97-121 9-33 (305)
485 PRK06841 short chain dehydroge 85.1 3.1 6.8E-05 39.5 7.4 26 96-121 15-40 (255)
486 PRK09730 putative NAD(P)-bindi 85.1 8.1 0.00018 36.2 10.2 46 97-150 2-47 (247)
487 TIGR00036 dapB dihydrodipicoli 85.1 1.6 3.6E-05 43.0 5.5 25 96-120 1-25 (266)
488 PRK09496 trkA potassium transp 85.0 1 2.2E-05 47.2 4.3 67 97-180 1-73 (453)
489 COG1052 LdhA Lactate dehydroge 85.0 2.8 6E-05 42.8 7.3 100 96-231 146-247 (324)
490 TIGR01851 argC_other N-acetyl- 84.9 4.5 9.7E-05 41.0 8.6 25 97-121 2-26 (310)
491 PRK06523 short chain dehydroge 84.9 3.1 6.7E-05 39.7 7.3 25 96-120 9-33 (260)
492 PRK07889 enoyl-(acyl carrier p 84.9 3.5 7.7E-05 39.7 7.7 78 97-183 8-96 (256)
493 PRK12481 2-deoxy-D-gluconate 3 84.8 2.6 5.7E-05 40.3 6.8 26 96-121 8-33 (251)
494 PLN02306 hydroxypyruvate reduc 84.7 3.5 7.6E-05 43.0 8.0 103 97-222 166-272 (386)
495 COG1064 AdhP Zn-dependent alco 84.7 6.4 0.00014 40.4 9.6 93 95-225 166-262 (339)
496 PRK07792 fabG 3-ketoacyl-(acyl 84.6 16 0.00035 36.2 12.5 76 96-184 12-101 (306)
497 PRK13535 erythrose 4-phosphate 84.6 2.9 6.3E-05 42.8 7.2 24 96-120 1-24 (336)
498 PRK07791 short chain dehydroge 84.5 20 0.00044 35.1 13.1 26 96-121 6-31 (286)
499 cd01488 Uba3_RUB Ubiquitin act 84.4 2.3 4.9E-05 42.8 6.2 30 98-132 1-30 (291)
500 cd01080 NAD_bind_m-THF_DH_Cycl 84.4 1.7 3.6E-05 40.1 4.8 55 95-183 43-98 (168)
No 1
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=100.00 E-value=2.4e-108 Score=848.58 Aligned_cols=435 Identities=83% Similarity=1.291 Sum_probs=410.6
Q ss_pred eeeecCCC-----ccccceeccccccccccccCccccccCCCCCCCCCCeeEEEeccc-ccccccccCCCCCCCCCccee
Q 013619 4 VAQLSPSS-----YTETTRLSSSQLSLSSTHLSSLRRRAFRPIIGPRNPTISCSVNQV-QAPVAVEQDDPKSKTNDCYGV 77 (439)
Q Consensus 4 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gv 77 (439)
||+++++. .+++++++++|+++++++++.|+|+.|+|++|.++++|+|||+++ |+|+++++++++.| +|||||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 81 (444)
T PLN00112 3 VAELSTPKVTSPFLNTSSRLRSSQLGLSRTHLSNHFRRALLPRRRATNARISCSVNQASQAPAAVQEKGVKTK-KECYGV 81 (444)
T ss_pred chhccccccccccccchhhccccccccccccccccccccccccccccccceeeccccccCCCccccccccccC-CCceEE
Confidence 56666553 568889999999999999999999999999999999999999999 88888888887666 999999
Q ss_pred eEEeecccchHHHhhccCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCC
Q 013619 78 FCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL 157 (439)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~ 157 (439)
||++||+.+|++.+.|+++.||+||||+|+||+++++.|+.+++++.|+.|.++|+++|+++++++|++|||+|+++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~ 161 (444)
T PLN00112 82 FCLTYDLKAEEETKSWKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLL 161 (444)
T ss_pred EEEEEecccchhhhcCCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999779999999999999999998788877777789999999999999999987776
Q ss_pred ccEEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCC
Q 013619 158 REVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAP 237 (439)
Q Consensus 158 ~~v~i~~~~~eal~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~k~s~ 237 (439)
.++++++++|++++|||+||+++|.|++|||+|.|++..|++||+++++.|+++++|+++||++|||||+||++++++++
T Consensus 162 ~~v~i~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~~k~sg 241 (444)
T PLN00112 162 REVSIGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALICLKNAP 241 (444)
T ss_pred CceEEecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHHHHHcC
Confidence 67888899999999999999999999999999999999999999999999999547999999999999999999999997
Q ss_pred CCCCCceeccccchHHHHHHHHHHHhCCCcccceeeEEEeccCCcceeccccceecCcchhhhhhhccccHHHHHHHHHH
Q 013619 238 SIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317 (439)
Q Consensus 238 ~~p~kvig~gt~LDs~R~~~~lA~~lgv~~~~V~~~~V~GeHGdt~Vp~~S~~~I~G~pi~~~i~~~~~~~~ei~~~v~~ 317 (439)
.+|+|+||+||.||++||+++||+++||++++|++++||||||++|||+||+++|+|+|+.+++.+.+|+.++|.+++++
T Consensus 242 ~~~~rViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGdsqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~ 321 (444)
T PLN00112 242 NIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQK 321 (444)
T ss_pred CCCcceEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEecCCCceeeccceeEECCccHHHhhccccchHHHHHHHHHH
Confidence 66669999999999999999999999999999987789999999999999999999999999988777888999999999
Q ss_pred hHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCCCCCHH
Q 013619 318 RGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDY 397 (439)
Q Consensus 318 ~~~~Ii~~kG~s~~~s~A~~i~~aI~~il~~~d~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~~L~~~ 397 (439)
+|++|+++||+++|+++|.+++++|++|+.|+|+++|+|+|++++|++||+++|++||+||++|++|+++++++++|+++
T Consensus 322 ~g~~Ii~~kG~t~~~s~a~ai~~~I~ail~~~d~~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~el~L~~~ 401 (444)
T PLN00112 322 RGGVLIKKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKDVEIDDY 401 (444)
T ss_pred HHHHHHhccCchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEEeCCcccCCCCCeEEEeEEEEeCCeeEEECCCCCCCHH
Confidence 99999999999999899999999999999888999999999999994499989999999999999999999966999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcccccC-CCCCCCCCCC
Q 013619 398 LRKRIAKTEQELLAEKKCVAHLTGEGIAFCDL-PEDTMLPGEM 439 (439)
Q Consensus 398 E~~~l~~sa~~l~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~ 439 (439)
|+++|++|+++|.+|++++.|++|+..+.|++ |+||||||||
T Consensus 402 E~~~l~~Sa~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (444)
T PLN00112 402 LRERIKKSEAELLAEKRCVAHLTGEGGAFCDLRPEDTMLPGEM 444 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccccCCCCC
Confidence 99999999999999999999999999999999 8999999998
No 2
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=100.00 E-value=5.5e-92 Score=717.26 Aligned_cols=383 Identities=78% Similarity=1.256 Sum_probs=360.1
Q ss_pred ccccccccccCCCCCCCCCcceeeEEeecccchHH--HhhccCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEe
Q 013619 55 QVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEE--TKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL 132 (439)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~--~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l 132 (439)
..|+|+.|.|++++.. ++||||||++||+++|++ .++|+++.||+||||+|+||+++|+.|+.+++++++++|.|+|
T Consensus 2 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L 80 (387)
T TIGR01757 2 AKQVQAGVATAEAAAT-KKCYGVFCLSYDLKNEDKSLTKSWKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKL 80 (387)
T ss_pred chhhhcccchhhHHhh-hcceEEEEEEeecCcchhHHHhcCCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEE
Confidence 3588888777777774 899999999999999988 4568889999999977999999999999999999888899999
Q ss_pred cccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhc
Q 013619 133 LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVA 212 (439)
Q Consensus 133 ~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a 212 (439)
+|+|+++++++|++|||+|+++++..++++++++|++++|||+||+++|.|++||++|.+++..|++|++++++.|++++
T Consensus 81 ~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a 160 (387)
T TIGR01757 81 LGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVA 160 (387)
T ss_pred eccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999867766788888999999999999999999999999999999999999999999999986
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHCCCCCCCceeccccchHHHHHHHHHHHhCCCcccceeeEEEeccCCcceecccccee
Q 013619 213 SRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARI 292 (439)
Q Consensus 213 ~p~aivIvvtNPvd~~t~i~~k~s~~~p~kvig~gt~LDs~R~~~~lA~~lgv~~~~V~~~~V~GeHGdt~Vp~~S~~~I 292 (439)
+|+++|||+|||+|+||+++++.++.+|+|+||+||.||++||+++||+++++++++|++++||||||++|||+||+++|
T Consensus 161 ~~~~iviVVsNPvDv~t~v~~k~sg~~~~rviG~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGds~vp~~S~a~V 240 (387)
T TIGR01757 161 SKNCKVLVVGNPCNTNALIAMKNAPNIPRKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHSTTQVPDFVNAKI 240 (387)
T ss_pred CCCeEEEEcCCcHHHHHHHHHHHcCCCcccEEEecchhHHHHHHHHHHHHHCcChhHcceeEEEecCCCcEEecceeeEE
Confidence 79999999999999999999999966666999999999999999999999999999997669999999999999999999
Q ss_pred cCcchhhhhhhccccHHHHHHHHHHhHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCc-cCCCCc
Q 013619 293 NGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNP-YGIAED 371 (439)
Q Consensus 293 ~G~pi~~~i~~~~~~~~ei~~~v~~~~~~Ii~~kG~s~~~s~A~~i~~aI~~il~~~d~~~v~~~sv~~~G~~-yGip~d 371 (439)
+|+|+.+++++.+|+.++|.++++++|++|++.||+++|+++|.+++++|++|+.|+|+++++|+|++++| + ||+|+|
T Consensus 241 ~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~~KG~t~~~s~a~ai~~~i~ai~~g~d~~~il~vsv~~~G-e~YGi~~g 319 (387)
T TIGR01757 241 GGRPAKEVIKDTKWLEEEFTPTVQKRGGALIKKWGRSSAASTAVSIADAIKSLVVPTPEGDWFSTGVYTDG-NPYGIAEG 319 (387)
T ss_pred CCEEhHHhcccccchHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEeCC-cccCCCCC
Confidence 99999998876678789999999999999999999999988999999999999988899999999999999 6 999899
Q ss_pred eEEEEEEEEcCCCceEeecCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCCCCCCCCCCC
Q 013619 372 IVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPEDTMLPGEM 439 (439)
Q Consensus 372 v~~svPv~ig~~Gv~~iv~~~~L~~~E~~~l~~sa~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 439 (439)
++||+||++|++|+++++.+++|+++|+++|++|+++|++|++++.|+++.+...|..|+|||+|||.
T Consensus 320 v~~S~Pvvig~~Gv~~Iv~~l~L~~~E~~~l~~Sa~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (387)
T TIGR01757 320 LVFSMPCRSKGDGDYELATDVSMDDFLRERIRKSEDELLKEKECVAHLIGEGNAYCAVPEDTMLPGEN 387 (387)
T ss_pred EEEEEEEEEeCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCcccCCCCC
Confidence 99999999999999999646999999999999999999999999999999999999999999999995
No 3
>PRK05442 malate dehydrogenase; Provisional
Probab=100.00 E-value=5.5e-73 Score=569.25 Aligned_cols=325 Identities=53% Similarity=0.859 Sum_probs=295.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCC
Q 013619 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (439)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~d 172 (439)
|++|+||+||||+|+||+++++.|+.+++++.++++.|+|+|+..+.++++|+++||+|+++++...+++++++|++++|
T Consensus 1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~d 80 (326)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKD 80 (326)
T ss_pred CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCC
Confidence 57889999999779999999999999999984455667776665566789999999999986666567888899999999
Q ss_pred CcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Cceeccccch
Q 013619 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (439)
Q Consensus 173 ADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvig~gt~LD 251 (439)
||+||++||.|+|||++|.+++..|++|+++++++|+++++|++++|++|||+|+||+++++.+|++|+ |+||+ |.||
T Consensus 81 aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~-t~LD 159 (326)
T PRK05442 81 ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIAMKNAPDLPAENFTAM-TRLD 159 (326)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHHHHHcCCCCHHHEEee-eHHH
Confidence 999999999999999999999999999999999999998668999999999999999999999978997 89999 9999
Q ss_pred HHHHHHHHHHHhCCCcccceeeEEEeccCCcceeccccceecCcchhhhhhhccccHHHHHHHHHHhHHHHHHhcCCccH
Q 013619 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSA 331 (439)
Q Consensus 252 s~R~~~~lA~~lgv~~~~V~~~~V~GeHGdt~Vp~~S~~~I~G~pi~~~i~~~~~~~~ei~~~v~~~~~~Ii~~kG~s~~ 331 (439)
++||+++||+++++++++|++++||||||++|||+||+++|+|+|+.+++.+.+|..+++.+++++++++|++.||+++|
T Consensus 160 s~R~r~~la~~l~v~~~~V~~~vV~GeHG~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t~~ 239 (326)
T PRK05442 160 HNRALSQLAAKAGVPVADIKKMTVWGNHSATQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEARGASSA 239 (326)
T ss_pred HHHHHHHHHHHhCcChHHeEEeEEEECCcCceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHhCcCCccH
Confidence 99999999999999999999855799999999999999999999999998766677889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCCCCCHHHHHHHHHHHHHHHH
Q 013619 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLA 411 (439)
Q Consensus 332 ~s~A~~i~~aI~~il~~~d~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~~L~~~E~~~l~~sa~~l~~ 411 (439)
+..+.++++.+++|+.+.++++++|+|++++| +||+|+|++||+||++| +|+++++++++|+++|+++|++|++.|++
T Consensus 240 ~~a~~~~~~iv~ail~~~~~~~i~~~sv~~~g-~ygi~~~v~~s~P~~ig-~Gv~~iv~~l~L~~~E~~~l~~s~~~l~~ 317 (326)
T PRK05442 240 ASAANAAIDHVRDWVLGTPEGDWVSMGVPSDG-SYGIPEGLIFGFPVTCE-NGEYEIVQGLEIDDFSREKIDATLAELEE 317 (326)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEEEecC-ccCCcCCeEEEEEEEEc-CcEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 74444468888888842228999999999999 89999999999999999 99999976799999999999999999999
Q ss_pred HHHHHHHhh
Q 013619 412 EKKCVAHLT 420 (439)
Q Consensus 412 ~~~~v~~~~ 420 (439)
+++++.|++
T Consensus 318 ~~~~~~~~~ 326 (326)
T PRK05442 318 ERDAVKHLL 326 (326)
T ss_pred HHHHHHhhC
Confidence 999999985
No 4
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=5.4e-72 Score=553.38 Aligned_cols=308 Identities=28% Similarity=0.440 Sum_probs=283.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEec-CcccccCCCcE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDAEW 175 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~-~~~eal~dADi 175 (439)
+||+|||| |+||+++|+.|+..++..+ +.| +|+++++++|.++||.|+.+.....+.++. ++|++++|||+
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~e---l~L----iDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDi 72 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSE---LVL----IDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADI 72 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccce---EEE----EEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCE
Confidence 59999997 9999999999976665533 666 577789999999999999865556677766 68999999999
Q ss_pred EEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeccccchHHH
Q 013619 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENR 254 (439)
Q Consensus 176 VIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvig~gt~LDs~R 254 (439)
||++||.||||||+|+||+..|++|+++++++|+++ +|+++|+|+|||+|+|||++|+++ ++|+ |+||+||.||++|
T Consensus 73 VvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~-~~d~ivlVvtNPvD~~ty~~~k~s-g~p~~rvig~gt~LDsaR 150 (313)
T COG0039 73 VVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKY-APDAIVLVVTNPVDILTYIAMKFS-GFPKNRVIGSGTVLDSAR 150 (313)
T ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCeEEEEecCcHHHHHHHHHHhc-CCCccceecccchHHHHH
Confidence 999999999999999999999999999999999999 699999999999999999999999 5676 8999999999999
Q ss_pred HHHHHHHHhCCCcccceeeEEEeccCCcceeccccceecCcchhhhhh-hccccHHHHHHHHHHhHHHHHHhcCCccHHH
Q 013619 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIK-DHKWLEEGFTETIQKRGGLLIKKWGRSSAAS 333 (439)
Q Consensus 255 ~~~~lA~~lgv~~~~V~~~~V~GeHGdt~Vp~~S~~~I~G~pi~~~i~-~~~~~~~ei~~~v~~~~~~Ii~~kG~s~~~s 333 (439)
|+++||+++|+++++|++ ||+|||||+|||+||+++|+|+|+.++++ ++.|..+++.++++++|++|++.||...+.+
T Consensus 151 ~~~~lae~~~v~~~~V~~-~ViGeHGdt~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~kG~~t~~~ 229 (313)
T COG0039 151 FRTFLAEKLGVSPKDVHA-YVIGEHGDTMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAKGAGTYYG 229 (313)
T ss_pred HHHHHHHHhCCChhHcee-eEeccCCCceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHccCccchhh
Confidence 999999999999999997 89999999999999999999999999988 5668889999999999999999998744557
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCCCCCHHHHHHHHHHHHHHHHHH
Q 013619 334 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEK 413 (439)
Q Consensus 334 ~A~~i~~aI~~il~~~d~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~~L~~~E~~~l~~sa~~l~~~~ 413 (439)
+|.+++++.++|+ .|+++|+|+|++++| +||+ +|+|||+||++|++|+++++ +++|+++||++|++|+++|++.+
T Consensus 230 ~A~a~a~~~~ail--~d~~~vl~~s~~l~G-~yg~-~dv~~gvP~~lg~~Gv~~ii-e~~l~~~E~~~l~~s~~~lk~~i 304 (313)
T COG0039 230 PAAALARMVEAIL--RDEKRVLPVSVYLDG-EYGV-EDVYFGVPAVLGKNGVEEIL-ELLLSDDEQEKLDKSAEELKKNI 304 (313)
T ss_pred HHHHHHHHHHHHH--cCCCceEEEEEeecC-ccCc-CCeEEEeeEEEcCCCcEEEe-cCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 688999999999999 7995 89999999999999999999 69999999999999999999999
Q ss_pred HHHHHhh
Q 013619 414 KCVAHLT 420 (439)
Q Consensus 414 ~~v~~~~ 420 (439)
+.+.++.
T Consensus 305 ~~~~~~~ 311 (313)
T COG0039 305 ELVKELV 311 (313)
T ss_pred HHHHHhh
Confidence 9998775
No 5
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=100.00 E-value=1.8e-71 Score=557.72 Aligned_cols=318 Identities=57% Similarity=0.902 Sum_probs=289.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCC
Q 013619 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (439)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (439)
++|.||+||||+|+||+++++.|+.+++++-++++.|+|+|+..+.++++|+++||+|+++++...++++.++|++++||
T Consensus 1 ~~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~da 80 (323)
T TIGR01759 1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDV 80 (323)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCC
Confidence 57899999997799999999999999998744455666665544557799999999999866655667888999999999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCC-CeEEEEeCCchhHHHHHHHHHCCCCCC-Cceeccccch
Q 013619 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR-NVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (439)
Q Consensus 174 DiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p-~aivIvvtNPvd~~t~i~~k~s~~~p~-kvig~gt~LD 251 (439)
|+||++||.|+|||++|.+++..|++|+++++++|+++ +| ++++|++|||+|+||+++++.++++|+ |+||+ |.||
T Consensus 81 DvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~-~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~-t~LD 158 (323)
T TIGR01759 81 DAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKV-AKKDVKVLVVGNPANTNALIASKNAPDIPPKNFSAM-TRLD 158 (323)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEe-eHHH
Confidence 99999999999999999999999999999999999999 57 999999999999999999999867887 88998 9999
Q ss_pred HHHHHHHHHHHhCCCcccceeeEEEeccCCcceeccccceecCcchhhhhhhccccHHHHHHHHHHhHHHHHHhcCCccH
Q 013619 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSA 331 (439)
Q Consensus 252 s~R~~~~lA~~lgv~~~~V~~~~V~GeHGdt~Vp~~S~~~I~G~pi~~~i~~~~~~~~ei~~~v~~~~~~Ii~~kG~s~~ 331 (439)
++||+++||+++|++|++|++++||||||++|||+||+++|+|+|+.+++.+..|+.+++.+++++++++|++.||+++|
T Consensus 159 s~R~r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t~~ 238 (323)
T TIGR01759 159 HNRAKYQLAAKAGVPVSDVKNVIIWGNHSNTQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEARGASSA 238 (323)
T ss_pred HHHHHHHHHHHhCcChHHeEEeEEEecCCCceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHhccCCcch
Confidence 99999999999999999998767999999999999999999999999988765576789999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCC--CcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCCCCCHHHHHHHHHHHHHH
Q 013619 332 ASTAVSIVDAMKSLVTPTPE--GDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQEL 409 (439)
Q Consensus 332 ~s~A~~i~~aI~~il~~~d~--~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~~L~~~E~~~l~~sa~~l 409 (439)
++.|.++++.+++|+ +|+ ++++|+|++++|++||+|+|+|||+||++|++|+++++++++|+++|+++|++|++.|
T Consensus 239 ~~~a~a~~~iv~ail--~~~~~~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv~~iv~~l~L~~~E~~~l~~sa~~l 316 (323)
T TIGR01759 239 ASAANAAIDHVRDWV--TGTPEGDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVEGLPLDDFVRGKLDATEDEL 316 (323)
T ss_pred HHHHHHHHHHHHHHH--cCCCCCcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 778889999999999 455 9999999999995599999999999999999999999955999999999999999999
Q ss_pred HHHHHH
Q 013619 410 LAEKKC 415 (439)
Q Consensus 410 ~~~~~~ 415 (439)
++++++
T Consensus 317 k~~~~~ 322 (323)
T TIGR01759 317 LEEKEE 322 (323)
T ss_pred HHHHhc
Confidence 999865
No 6
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=8.4e-70 Score=561.66 Aligned_cols=318 Identities=29% Similarity=0.434 Sum_probs=295.5
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccC
Q 013619 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (439)
Q Consensus 92 ~~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~ 171 (439)
.++++.+|+|+||+|+||++|++.|+++++|+.|++|.|+|+|++.++++++|++|||+|++++++..+.+++++|++++
T Consensus 119 ~~~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~~~~ea~~ 198 (452)
T cd05295 119 SKINPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTTDLDVAFK 198 (452)
T ss_pred cCCCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEECCHHHhC
Confidence 46678999999999999999999999999999999999999887768999999999999999888777888899999999
Q ss_pred CCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCC--CeEEEEeCCchhHHHHHHHHHCCCCCC-Cceeccc
Q 013619 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR--NVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALT 248 (439)
Q Consensus 172 dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p--~aivIvvtNPvd~~t~i~~k~s~~~p~-kvig~gt 248 (439)
|||+||+++|.|++|||+|.|++..|++||++++++|+++ +| ++++|++|||+|+||++++++++++|+ |+||+||
T Consensus 199 daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~-a~~~~~VlVv~tNPvD~~t~i~~k~apgiP~~rVig~gt 277 (452)
T cd05295 199 DAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKN-AKEDVKVIVAGRTFLNLKTSILIKYAPSIPRKNIIAVAR 277 (452)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHh-CCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEecc
Confidence 9999999999999999999999999999999999999999 47 889999999999999999999988997 8899999
Q ss_pred cchHHHHHHHHHHHhCCCcccceeeEEEeccCCcceeccccceecC------------cchhhhhhhccccHHHHHHHHH
Q 013619 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARING------------LPVKEIIKDHKWLEEGFTETIQ 316 (439)
Q Consensus 249 ~LDs~R~~~~lA~~lgv~~~~V~~~~V~GeHGdt~Vp~~S~~~I~G------------~pi~~~i~~~~~~~~ei~~~v~ 316 (439)
||++|++++||+++||++++|++++||||||++|||+||+++|+| +|+.+++.+.+|..+++.+.++
T Consensus 278 -lds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~~~~v~ 356 (452)
T cd05295 278 -LQENRAKALLARKLNVNSAGIKDVIVWGNIGGNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEFVATLK 356 (452)
T ss_pred -hHHHHHHHHHHHHhCcCHHHceeeEEEEccCCceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHHHHHHH
Confidence 779999999999999999999888999999999999999999988 9999998777788889999999
Q ss_pred HhHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCCCCCH
Q 013619 317 KRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDD 396 (439)
Q Consensus 317 ~~~~~Ii~~kG~s~~~s~A~~i~~aI~~il~~~d~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~~L~~ 396 (439)
++++ +++|.+ ++++|.++++++++|+.++++++|+|+||+++| +||+|+|++||+||+++++|++.+. +++|++
T Consensus 357 ~rg~---~rkgsT-~~siA~A~~~iv~ail~~t~~~~ilsvsv~sdG-~YGip~gv~~S~Pviig~~Gve~V~-~L~L~e 430 (452)
T cd05295 357 SLSS---SLNHEA-AISPAHAIATTLSYWYHGSPPGEIFSLGVISEG-WYGIPEGIVFSMPVKFQNGSWEVVT-DLELSE 430 (452)
T ss_pred HHHH---hccCCh-HHHHHHHHHHHHHHHHhCCCCCeEEEEEEeecc-ccCCcCCEEEEEEEEEeCCeEEEEe-CCCCCH
Confidence 9988 455544 557999999999999976556899999999999 8999999999999999999999887 799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013619 397 YLRKRIAKTEQELLAEKKCVA 417 (439)
Q Consensus 397 ~E~~~l~~sa~~l~~~~~~v~ 417 (439)
+|+++|++|+++|.+|++.+.
T Consensus 431 ~E~~kL~~S~~eL~~E~~~~~ 451 (452)
T cd05295 431 ILREVLKRITSDLIQEKLVAL 451 (452)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999998874
No 7
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=3.8e-69 Score=541.14 Aligned_cols=320 Identities=58% Similarity=0.923 Sum_probs=292.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (439)
|++||+||||+|+||+++++.|+.+++++.++++.|+|+|+..+.++++|+++||+|+++++..++++++++|++++|||
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daD 80 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDAD 80 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCC
Confidence 57899999977999999999999999998556677777766556677999999999998666666788889999999999
Q ss_pred EEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcC-CCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeccccchH
Q 013619 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS-RNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (439)
Q Consensus 175 iVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~-p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvig~gt~LDs 252 (439)
+||+++|.|++||++|.+++..|++|+++++++|+++ + |++++|++|||+|+||+++++.++++|+ |+||+ |.||+
T Consensus 81 ivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~ViG~-t~LDs 158 (322)
T cd01338 81 WALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDV-ASRDVKVLVVGNPCNTNALIAMKNAPDIPPDNFTAM-TRLDH 158 (322)
T ss_pred EEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCCeEEEEecCcHHHHHHHHHHHcCCCChHheEEe-hHHHH
Confidence 9999999999999999999999999999999999999 6 5999999999999999999999966887 89999 99999
Q ss_pred HHHHHHHHHHhCCCcccceeeEEEeccCCcceeccccceecCcchhhhhhhccccHHHHHHHHHHhHHHHHHhcCCccHH
Q 013619 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAA 332 (439)
Q Consensus 253 ~R~~~~lA~~lgv~~~~V~~~~V~GeHGdt~Vp~~S~~~I~G~pi~~~i~~~~~~~~ei~~~v~~~~~~Ii~~kG~s~~~ 332 (439)
+||++++|+++|+++++|++++||||||+++||+||+++++|+|+.+++.+.+|..+++.+++++++++|++.||+++|+
T Consensus 159 ~Rl~~~la~~lgv~~~~v~~~~V~GeHG~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t~~~ 238 (322)
T cd01338 159 NRAKSQLAKKAGVPVTDVKNMVIWGNHSPTQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKARGASSAA 238 (322)
T ss_pred HHHHHHHHHHhCcChhHeEEEEEEeCCcccEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHhCcCCccHH
Confidence 99999999999999999998667999999999999999999999998887666778899999999999999999999997
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCCCCCHHHHHHHHHHHHHHHHH
Q 013619 333 STAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAE 412 (439)
Q Consensus 333 s~A~~i~~aI~~il~~~d~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~~L~~~E~~~l~~sa~~l~~~ 412 (439)
..+.++++.+++|+...+++.++|+|++++| +||+|+|++||+||++|++|+++++ +++|+++|+++|++|++.|+++
T Consensus 239 ~~a~a~~~iv~ail~~~~~~~i~~~sv~~~g-~yg~~~~v~~s~P~~ig~~Gv~~i~-~l~L~~~E~~~l~~s~~~l~~~ 316 (322)
T cd01338 239 SAANAAIDHMRDWVLGTPEGDWFSMAVPSDG-SYGIPEGLIFSFPVRSKGGGYEIVE-GLEIDDFAREKIDATLAELLEE 316 (322)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEEEccC-ccCCCCCeEEEEEEEEeCCEEEEEe-CCCCCHHHHHHHHHHHHHHHHH
Confidence 4446999999999943223699999999999 8999999999999999999999998 6999999999999999999999
Q ss_pred HHHHHH
Q 013619 413 KKCVAH 418 (439)
Q Consensus 413 ~~~v~~ 418 (439)
++.+.|
T Consensus 317 ~~~~~~ 322 (322)
T cd01338 317 REAVKH 322 (322)
T ss_pred HHHhhC
Confidence 999987
No 8
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=7.2e-69 Score=535.88 Aligned_cols=298 Identities=22% Similarity=0.315 Sum_probs=273.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCC--ccEEEecCcccccCCCcE
Q 013619 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL--REVKIGINPYELFEDAEW 175 (439)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~--~~v~i~~~~~eal~dADi 175 (439)
||+|||| |+||+++|+.|+.++++++ |+| +|+++++++|+++||+|+. ++. .+++++.++|++++|||+
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~e---lvL----~Di~~~~a~g~a~DL~~~~-~~~~~~~~~i~~~~y~~~~~aDi 71 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSE---IVL----IDVNEGVAEGEALDFHHAT-ALTYSTNTKIRAGDYDDCADADI 71 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCE---EEE----EeCCcchhhHHHHHHHhhh-ccCCCCCEEEEECCHHHhCCCCE
Confidence 8999996 9999999999999999875 777 5778899999999999986 343 357777889999999999
Q ss_pred EEEeCCcCCCCCCc--hhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeccccchH
Q 013619 176 ALLIGAKPRGPGME--RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (439)
Q Consensus 176 VIitag~~~kpg~~--r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvig~gt~LDs 252 (439)
||+|+|.|+|||++ |+|++..|++|++++++.|+++ +|++++|++|||+|+|||++++.+ ++|+ |+||+||.|||
T Consensus 72 vvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~-~p~~i~ivvsNPvDv~t~~~~k~s-g~p~~rviG~gt~LDs 149 (307)
T cd05290 72 IVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKV-TKEAVIILITNPLDIAVYIAATEF-DYPANKVIGTGTMLDT 149 (307)
T ss_pred EEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEecCcHHHHHHHHHHHh-CcChhheecccchHHH
Confidence 99999999999998 6999999999999999999999 699999999999999999999999 6776 99999999999
Q ss_pred HHHHHHHHHHhCCCcccceeeEEEeccCCcceeccccceecCcchhhhhhh---ccccHHHHHHHHHHhHHHHHHhcCCc
Q 013619 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD---HKWLEEGFTETIQKRGGLLIKKWGRS 329 (439)
Q Consensus 253 ~R~~~~lA~~lgv~~~~V~~~~V~GeHGdt~Vp~~S~~~I~G~pi~~~i~~---~~~~~~ei~~~v~~~~~~Ii~~kG~s 329 (439)
+||+++||+++|+++++|++ ||||||||+|||+||+++|+|+|+.+++.. +.|..+++.++++++|++|++.||.+
T Consensus 150 ~R~~~~la~~l~v~~~~V~~-~ViGeHGds~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~KG~t 228 (307)
T cd05290 150 ARLRRIVADKYGVDPKNVTG-YVLGEHGSHAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNRKGWT 228 (307)
T ss_pred HHHHHHHHHHhCCCcccEEE-EEEecCCCceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHccCee
Confidence 99999999999999999998 899999999999999999999999998752 23446889999999999999999999
Q ss_pred cHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCCCCCHHHHHHHHHHHHHH
Q 013619 330 SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQEL 409 (439)
Q Consensus 330 ~~~s~A~~i~~aI~~il~~~d~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~~L~~~E~~~l~~sa~~l 409 (439)
+|+ +|.++++.+.+|+ .|+++++|+|++++| +|| ++|+|+|+||++|++|+++++ +++|+++|+++|++|++.|
T Consensus 229 ~~~-ia~a~~~ii~ail--~d~~~v~~vsv~~~G-~yg-~~~v~~svP~~ig~~Gv~~i~-~l~L~~~E~~~l~~s~~~i 302 (307)
T cd05290 229 NAG-IAKSASRLIKAIL--LDERSILPVCTLLSG-EYG-LSDVALSLPTVIGAKGIERVL-EIPLDEWELEKLHKSAKAI 302 (307)
T ss_pred hHH-HHHHHHHHHHHHH--hCCCeEEEEEEeeCC-ccC-CCCEEEEEEEEEeCCCceEec-CCCCCHHHHHHHHHHHHHH
Confidence 885 6678888888888 688999999999999 799 589999999999999999999 5999999999999999999
Q ss_pred HHHH
Q 013619 410 LAEK 413 (439)
Q Consensus 410 ~~~~ 413 (439)
++..
T Consensus 303 ~~~~ 306 (307)
T cd05290 303 RETI 306 (307)
T ss_pred HHHh
Confidence 8754
No 9
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=5.3e-69 Score=540.28 Aligned_cols=315 Identities=51% Similarity=0.780 Sum_probs=286.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (439)
.||+||||+|+||+++++.|+.++++++++++.|+|+|++.+.++++|+++||.|+.+++.+.++++.++|++++|||+|
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence 38999998899999999999999999866666777765443338999999999999866666667878899999999999
Q ss_pred EEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeccccchHHHH
Q 013619 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (439)
Q Consensus 177 Iitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvig~gt~LDs~R~ 255 (439)
|++||.|++||++|.+++..|++|++++++.|+++++|++++|++|||+|+||+++++.++.+|+ |+||+ |.|||+||
T Consensus 81 VitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~vig~-t~LDs~R~ 159 (323)
T cd00704 81 ILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIALKNAPNLPPKNFTAL-TRLDHNRA 159 (323)
T ss_pred EEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEe-eHHHHHHH
Confidence 99999999999999999999999999999999999559999999999999999999999954687 77877 99999999
Q ss_pred HHHHHHHhCCCcccceeeEEEeccCCcceeccccceecCcchhhhh---hhccccHHHHHHHHHHhHHHHHHhcCCccHH
Q 013619 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEII---KDHKWLEEGFTETIQKRGGLLIKKWGRSSAA 332 (439)
Q Consensus 256 ~~~lA~~lgv~~~~V~~~~V~GeHGdt~Vp~~S~~~I~G~pi~~~i---~~~~~~~~ei~~~v~~~~~~Ii~~kG~s~~~ 332 (439)
|++||++++++|++|++++||||||++|||+||+++|+|.|+.++. .+++|..+++.+++++++++|++.||+++|+
T Consensus 160 r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~~kg~t~~~ 239 (323)
T cd00704 160 KAQVARKLGVRVSDVKNVIIWGNHSNTQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKKRGASSAA 239 (323)
T ss_pred HHHHHHHhCcCHHHceeeeEEecccCceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHhccCcchhH
Confidence 9999999999999998778999999999999999999999998874 2335667899999999999999999999997
Q ss_pred HHHHHHHHHHHHhhcCCCCC--cEEEEeeeeCCCcc-CCCCceEEEEEEEEcCCCceEeecCCCCCHHHHHHHHHHHHHH
Q 013619 333 STAVSIVDAMKSLVTPTPEG--DWFSSGVYTNGNPY-GIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQEL 409 (439)
Q Consensus 333 s~A~~i~~aI~~il~~~d~~--~v~~~sv~~~G~~y-Gip~dv~~svPv~ig~~Gv~~iv~~~~L~~~E~~~l~~sa~~l 409 (439)
++|.++++.+++|+ +|++ +++|+|++++| +| |+|+|++||+||++|++||++++ +++|+++|+++|++|++.|
T Consensus 240 ~~a~a~~~iv~ail--~~~~~~~v~~~s~~~~g-~y~gi~~~v~~s~P~~ig~~Gv~~v~-~l~L~~~E~~~l~~s~~~l 315 (323)
T cd00704 240 SAAKAIADHVKDWL--FGTPPGEIVSMGVYSPG-NPYGIPPGIVFSFPCTCKGGGWHVVE-DLKLNDWLREKLKATEEEL 315 (323)
T ss_pred HHHHHHHHHHHHHH--hCCCCCcEEEEEEEeCC-ccCCCCCceEEEEEEEEcCCEEEEec-CCCCCHHHHHHHHHHHHHH
Confidence 78999999999999 4666 99999999999 79 99999999999999999999988 6999999999999999999
Q ss_pred HHHHHHH
Q 013619 410 LAEKKCV 416 (439)
Q Consensus 410 ~~~~~~v 416 (439)
+++++++
T Consensus 316 ~~~~~~~ 322 (323)
T cd00704 316 IEEKEIA 322 (323)
T ss_pred HHHHHhh
Confidence 9999876
No 10
>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=4.8e-69 Score=503.28 Aligned_cols=327 Identities=49% Similarity=0.721 Sum_probs=319.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCC
Q 013619 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (439)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~d 172 (439)
|+++.+|.|.||+|+||+++++.|+.+.+|+.|++|.|+|+|+.+..+.|+|+.|+|+|+++|++..+.++++..++|+|
T Consensus 1 ~~epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~PlL~~Vvattd~~~afkd 80 (332)
T KOG1496|consen 1 MKEPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCALPLLKGVVATTDEVEAFKD 80 (332)
T ss_pred CCCceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhhhHHHhhhcccChhhhhcc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCceeccccchH
Q 013619 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDE 252 (439)
Q Consensus 173 ADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~kvig~gt~LDs 252 (439)
.|+.|+.++.||++||+|.|++..|.+||++.+.++++||+|+++|+|++||+|+++.++.++++.+|+++|...|+||.
T Consensus 81 v~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~k~ApsIP~kNfs~lTRLDh 160 (332)
T KOG1496|consen 81 VDVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILKKFAPSIPEKNFSALTRLDH 160 (332)
T ss_pred CcEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHhhhCCCCchhcchhhhhhch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcccceeeEEEeccCCcceeccccceecC----cchhhhhhhccccHHHHHHHHHHhHHHHHHhcCC
Q 013619 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARING----LPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGR 328 (439)
Q Consensus 253 ~R~~~~lA~~lgv~~~~V~~~~V~GeHGdt~Vp~~S~~~I~G----~pi~~~i~~~~~~~~ei~~~v~~~~~~Ii~~kG~ 328 (439)
+|+..+||.++||+.++|++++|||||+.+|+|++.+++|++ +|+.+.++|..|+.++|.+.|++||..+|++|+.
T Consensus 161 NRA~~QlA~klgv~~~~VkNviIWGNHSsTQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~ark~ 240 (332)
T KOG1496|consen 161 NRALAQLALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIKARKL 240 (332)
T ss_pred hhHHHHHHHhhCCchhhcceeEEecccccccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhhhhhh
Confidence 999999999999999999999999999999999999999986 8999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCCCCCHHHHHHHHHHHHH
Q 013619 329 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQE 408 (439)
Q Consensus 329 s~~~s~A~~i~~aI~~il~~~d~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~~L~~~E~~~l~~sa~~ 408 (439)
++++|+|.+++|+|++|+.|++++.|++++|+++| .||+|+|..||+||++.+ |-|+++++++++|+.|+++..++++
T Consensus 241 SSA~SaA~aacDhi~dw~~gTpeG~fvSmgV~sDG-sYgip~gli~SfPv~~k~-g~wkiVqgl~iddf~r~km~~t~~E 318 (332)
T KOG1496|consen 241 SSAMSAAKAACDHIRDWWFGTPEGTFVSMGVYSDG-SYGIPDGLIFSFPVTIKN-GDWKIVQGLPIDDFSREKMDLTAKE 318 (332)
T ss_pred hhhhhHHHhHhhhhhheecCCCCccEEEEeeecCC-CCCCCCCeEEEcceEecC-CceEEEcCcchhHHHHHhhhhhHHH
Confidence 99999999999999999999999999999999999 599999999999999974 9999999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 013619 409 LLAEKKCVAHLTG 421 (439)
Q Consensus 409 l~~~~~~v~~~~~ 421 (439)
|.+|++++.|+++
T Consensus 319 L~eEkd~a~~~l~ 331 (332)
T KOG1496|consen 319 LKEEKDLAYSCLS 331 (332)
T ss_pred HHHhHHHHHHhhc
Confidence 9999999999875
No 11
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=100.00 E-value=1.6e-67 Score=529.80 Aligned_cols=318 Identities=47% Similarity=0.713 Sum_probs=284.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEEE
Q 013619 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (439)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVI 177 (439)
||+||||+|+||+++++.|+.+++++.++++.|+|+|++.+.++++|+++||.|+++++...+..++++|++++|||+||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 69999987999999999999999986333456666666556667999999999998666555554557799999999999
Q ss_pred EeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCceeccccchHHHHHH
Q 013619 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKC 257 (439)
Q Consensus 178 itag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~kvig~gt~LDs~R~~~ 257 (439)
++||.|+++|++|.+++..|++|+++++++|+++++|++++|++|||+|+||++++++++++|+++||+||.|||+||++
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~~~sg~~~~~vig~gt~LDs~R~r~ 160 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVLSNYAPSIPPKNFSALTRLDHNRALA 160 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCcceEEEeeehHHHHHHH
Confidence 99999999999999999999999999999999985599999999999999999999999878879999999999999999
Q ss_pred HHHHHhCCCcccceeeEEEeccCCcceeccccceec-C---cchhhhhhhccccHHHHHHHHHHhHHHHHHhcCCccHHH
Q 013619 258 QLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIN-G---LPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAS 333 (439)
Q Consensus 258 ~lA~~lgv~~~~V~~~~V~GeHGdt~Vp~~S~~~I~-G---~pi~~~i~~~~~~~~ei~~~v~~~~~~Ii~~kG~s~~~s 333 (439)
+||+++|+++++|++++||||||++|||+||+++|+ | +|+.+++.+.+|+.+++.+++++++++|++.+|++...+
T Consensus 161 ~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~~t~~~ 240 (324)
T TIGR01758 161 QVAERAGVPVSDVKNVIIWGNHSSTQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRARKLSSALS 240 (324)
T ss_pred HHHHHhCCChhhceEeEEEECCCCCcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhccCCCHHHH
Confidence 999999999999987799999999999999999999 9 999998876557678999999999999999776455557
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCc-cCCCCceEEEEEEEEcCCCceEeecCCCCCHHHHHHHHHHHHHHHHH
Q 013619 334 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNP-YGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAE 412 (439)
Q Consensus 334 ~A~~i~~aI~~il~~~d~~~v~~~sv~~~G~~-yGip~dv~~svPv~ig~~Gv~~iv~~~~L~~~E~~~l~~sa~~l~~~ 412 (439)
+|.++++.+++|+.|.|+++++|+|++++| + ||+|+|++||+||++|++|++ ++.+++|+++|+++|++|++.|+++
T Consensus 241 ia~~~~~i~~ai~~~~~~~~i~~vs~~~~g-~~yg~~~~v~~s~P~~ig~g~~~-~i~el~L~~~E~~~l~~s~~~lk~~ 318 (324)
T TIGR01758 241 AAKAAVDQMHDWVLGTPEGTFVSMGVYSDG-SPYGVPKGLIFSFPVTCKNGEWK-IVEGLCVDDSSRKKLALTAKELEEE 318 (324)
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEEEeecCC-cccCCCCceEEEEEEEEcCCeEE-EecCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999977799999999999999 8 999889999999999955554 4546999999999999999999999
Q ss_pred HHHHH
Q 013619 413 KKCVA 417 (439)
Q Consensus 413 ~~~v~ 417 (439)
++++.
T Consensus 319 ~~~~~ 323 (324)
T TIGR01758 319 RDEAL 323 (324)
T ss_pred HHHhh
Confidence 98873
No 12
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=1.5e-67 Score=500.57 Aligned_cols=303 Identities=21% Similarity=0.334 Sum_probs=279.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEe-cCcccccCCC
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDA 173 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~dA 173 (439)
+..||+|+|+ |+||.++++.|+..++.+| ++| +|.++++++|.+|||+|++ +|++.-++. ..||.+.+|+
T Consensus 19 ~~~KItVVG~-G~VGmAca~siL~k~Lade---l~l----vDv~~dklkGE~MDLqH~s-~f~~~~~V~~~~Dy~~sa~S 89 (332)
T KOG1495|consen 19 KHNKITVVGV-GQVGMACAISILLKGLADE---LVL----VDVNEDKLKGEMMDLQHGS-AFLSTPNVVASKDYSVSANS 89 (332)
T ss_pred cCceEEEEcc-chHHHHHHHHHHHhhhhhc---eEE----EecCcchhhhhhhhhcccc-ccccCCceEecCcccccCCC
Confidence 4679999995 9999999999999999875 777 5788999999999999998 677555554 4599999999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeccccchH
Q 013619 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (439)
Q Consensus 174 DiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvig~gt~LDs 252 (439)
++||+|||..+++|++|++++++|+.||+.+.+++.+| +|++++|+++||+|+|||+.||.+ +||+ |+||+||.|||
T Consensus 90 ~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~y-Spd~~llvvSNPVDilTYv~wKLS-gfP~nRViGsGcnLDs 167 (332)
T KOG1495|consen 90 KLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKY-SPDCILLVVSNPVDILTYVTWKLS-GFPKNRVIGSGCNLDS 167 (332)
T ss_pred cEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCchHHHHHHHHHHc-CCcccceeccCcCccH
Confidence 99999999988999999999999999999999999999 899999999999999999999999 7998 99999999999
Q ss_pred HHHHHHHHHHhCCCcccceeeEEEeccCCcceeccccceecCcchhhhhhhc-------cccHHHHHHHHHHhHHHHHHh
Q 013619 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH-------KWLEEGFTETIQKRGGLLIKK 325 (439)
Q Consensus 253 ~R~~~~lA~~lgv~~~~V~~~~V~GeHGdt~Vp~~S~~~I~G~pi~~~i~~~-------~~~~~ei~~~v~~~~~~Ii~~ 325 (439)
+|||++++++||++|+++++ +|+|||||+.||+||.+.|.|.++.++..+. .| +++.+++...+|+|++.
T Consensus 168 aRFryLi~~~Lg~~pss~hg-wIiGEHGdSsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w--~eihK~v~~sayevikl 244 (332)
T KOG1495|consen 168 ARFRYLIGNRLGVHPSSCHG-WIIGEHGDSSVPVWSGVNIAGVSLKDLNPDLGTDYDPENW--KEIHKQVVDSAYEVIKL 244 (332)
T ss_pred HHHHHHHHHHhCCCcccceE-EEeeccCCccceecccccccceEHhHhChhhcCCCCHHHH--HHHHHHHHHHHHHHHHh
Confidence 99999999999999999997 8999999999999999999999999887642 24 57889999999999999
Q ss_pred cCCccHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCCCCCHHHHHHHHHH
Q 013619 326 WGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKT 405 (439)
Q Consensus 326 kG~s~~~s~A~~i~~aI~~il~~~d~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~~L~~~E~~~l~~s 405 (439)
||+|+|+ .+.++++.+.+|+ .|+++++|+|+..+| .|||.+|+|+|+||+++++|+..++ ..+|+++|.++|++|
T Consensus 245 KGyTswa-Iglsva~l~~ail--~n~~~i~~Vst~~kg-~~gI~~dVflSlPc~l~~~Gi~~vv-~~~Lt~~E~akL~kS 319 (332)
T KOG1495|consen 245 KGYTSWA-IGLSVADLAQAIL--RNLRRIHPVSTMVKG-LYGIDDDVFLSLPCLLGANGITHVV-KQKLTDEEVAKLKKS 319 (332)
T ss_pred cCchHHH-HHHHHHHHHHHHH--hCcCceeeeeecccc-ccCCCCceEEecceeecCCchhhhh-cccCCHHHHHHHHHH
Confidence 9999995 7777777777777 799999999999999 8999889999999999999999999 699999999999999
Q ss_pred HHHHHHHHHHH
Q 013619 406 EQELLAEKKCV 416 (439)
Q Consensus 406 a~~l~~~~~~v 416 (439)
|+.|++.++.+
T Consensus 320 a~tl~~~q~~l 330 (332)
T KOG1495|consen 320 AKTLLEAQKSL 330 (332)
T ss_pred HHHHHHHHHhc
Confidence 99999987653
No 13
>PLN02602 lactate dehydrogenase
Probab=100.00 E-value=3.6e-67 Score=531.20 Aligned_cols=325 Identities=20% Similarity=0.297 Sum_probs=285.2
Q ss_pred cceeeEEeec-ccchHHHhhc-cCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhc
Q 013619 74 CYGVFCLTYD-LKAEEETKSW-KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (439)
Q Consensus 74 ~~gv~~~~~~-~~~~~~~~~~-~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~ 151 (439)
-|++||+... ..... ..|. ++.+||+|||| |+||+++++.|+..+++++ |.| +|+++++++|+++||+|
T Consensus 14 ~~~~~~~~~~~~~~~~-~~m~~~~~~KI~IIGa-G~VG~~~a~~l~~~~l~~e---l~L----iDi~~~~~~g~a~DL~~ 84 (350)
T PLN02602 14 GLDLSQAFFKPIHNSS-PPSPTRRHTKVSVVGV-GNVGMAIAQTILTQDLADE---LAL----VDVNPDKLRGEMLDLQH 84 (350)
T ss_pred hhhhhhhhhhcccccc-cccccCCCCEEEEECC-CHHHHHHHHHHHhCCCCCE---EEE----EeCCCchhhHHHHHHHh
Confidence 4568887766 33332 1131 22379999996 9999999999999999875 777 57788999999999999
Q ss_pred ccCCCCccEEEec-CcccccCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHH
Q 013619 152 SLFPLLREVKIGI-NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (439)
Q Consensus 152 ~~~~~~~~v~i~~-~~~eal~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~ 230 (439)
++ ++...+.+.. ++|++++|||+||+++|.|++||++|.|++.+|++|++++++.|+++ +|++++|++|||+|++|+
T Consensus 85 ~~-~~~~~~~i~~~~dy~~~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivivvtNPvdv~t~ 162 (350)
T PLN02602 85 AA-AFLPRTKILASTDYAVTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLIVSNPVDVLTY 162 (350)
T ss_pred hh-hcCCCCEEEeCCCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCchHHHHH
Confidence 97 4554456653 68999999999999999999999999999999999999999999998 799999999999999999
Q ss_pred HHHHHCCCCCC-CceeccccchHHHHHHHHHHHhCCCcccceeeEEEeccCCcceeccccceecCcchhhhhhhc--ccc
Q 013619 231 ICLKNAPSIPA-KNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH--KWL 307 (439)
Q Consensus 231 i~~k~s~~~p~-kvig~gt~LDs~R~~~~lA~~lgv~~~~V~~~~V~GeHGdt~Vp~~S~~~I~G~pi~~~i~~~--~~~ 307 (439)
++++++ ++|+ |+||+||.||++|++++||+++|+++++|++ +||||||++|||+||+++|+|+|+.+++... .++
T Consensus 163 ~~~k~s-g~p~~rviG~gt~LDs~R~r~~lA~~l~v~~~~V~~-~ViGeHGds~vp~wS~~~i~G~pl~~~~~~~~~~~~ 240 (350)
T PLN02602 163 VAWKLS-GFPANRVIGSGTNLDSSRFRFLIADHLDVNAQDVQA-YIVGEHGDSSVALWSSVSVGGVPVLSFLEKQQIAYE 240 (350)
T ss_pred HHHHHh-CCCHHHEEeecchHHHHHHHHHHHHHhCCCccceee-eEEecCCCceEeeeeeeeECCEEHHHHhhccCCccC
Confidence 999999 5887 8899999999999999999999999999997 8999999999999999999999999987541 111
Q ss_pred ---HHHHHHHHHHhHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCC-CceEEEEEEEEcCC
Q 013619 308 ---EEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIA-EDIVFSMPCRSKGD 383 (439)
Q Consensus 308 ---~~ei~~~v~~~~~~Ii~~kG~s~~~s~A~~i~~aI~~il~~~d~~~v~~~sv~~~G~~yGip-~dv~~svPv~ig~~ 383 (439)
.+++.++++++|++|++.||.++|+ +|.++++++.+++ .|+++++|+|++++| +||+| +|+|+|+||++|++
T Consensus 241 ~~~~~~i~~~v~~~g~eIi~~KG~t~~g-ia~a~a~ii~ail--~d~~~v~~vsv~~~g-~Yg~~~~~v~~s~P~~ig~~ 316 (350)
T PLN02602 241 KETLEEIHRAVVDSAYEVIKLKGYTSWA-IGYSVASLVRSLL--RDQRRIHPVSVLAKG-FHGIDEGDVFLSLPAQLGRN 316 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccHHH-HHHHHHHHHHHHH--hcCCCeEEEEEeccc-ccCCCCCCcEEEEEEEEeCC
Confidence 4679999999999999999998874 6777778888887 689999999999999 89994 89999999999999
Q ss_pred CceEeecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013619 384 GDYELVKDVIFDDYLRKRIAKTEQELLAEKKCV 416 (439)
Q Consensus 384 Gv~~iv~~~~L~~~E~~~l~~sa~~l~~~~~~v 416 (439)
|+++++ +++|+++|+++|++|+++|++..+.+
T Consensus 317 Gi~~i~-~l~L~~~E~~~l~~sa~~l~~~~~~~ 348 (350)
T PLN02602 317 GVLGVV-NVHLTDEEAERLRKSAKTLWEVQSQL 348 (350)
T ss_pred eeEEEe-cCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999 59999999999999999999876654
No 14
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=100.00 E-value=5.3e-67 Score=521.04 Aligned_cols=294 Identities=22% Similarity=0.333 Sum_probs=271.2
Q ss_pred EEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEEEEeC
Q 013619 101 VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIG 180 (439)
Q Consensus 101 IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVIita 180 (439)
|||| |+||+++++.|+..+++++ |.| +|+++++++|+++||+|+.+.+..+++++.++|++++|||+||+++
T Consensus 1 iIGa-G~VG~~~a~~l~~~~l~~e---l~L----~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVita 72 (299)
T TIGR01771 1 IIGA-GNVGSSTAFALLNQGIADE---IVL----IDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITA 72 (299)
T ss_pred CCCc-CHHHHHHHHHHHhcCCCCE---EEE----EeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECC
Confidence 7995 9999999999999999875 777 5778899999999999998555456788889999999999999999
Q ss_pred CcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeccccchHHHHHHHH
Q 013619 181 AKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAKCQL 259 (439)
Q Consensus 181 g~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvig~gt~LDs~R~~~~l 259 (439)
|.|+||||+|.+++.+|++|++++++.|+++ +|++++|++|||+|+||+++++++ ++|+ |+||+||.||++|+++++
T Consensus 73 g~~rk~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~d~~t~~~~~~s-g~p~~~viG~gt~LDs~R~~~~l 150 (299)
T TIGR01771 73 GAPQKPGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVATNPVDILTYVAWKLS-GFPKNRVIGSGTVLDTARLRYLL 150 (299)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHh-CCCHHHEEeccchHHHHHHHHHH
Confidence 9999999999999999999999999999998 799999999999999999999998 7887 889999999999999999
Q ss_pred HHHhCCCcccceeeEEEeccCCcceeccccceecCcchhhhhhh----ccccHHHHHHHHHHhHHHHHHhcCCccHHHHH
Q 013619 260 ALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD----HKWLEEGFTETIQKRGGLLIKKWGRSSAASTA 335 (439)
Q Consensus 260 A~~lgv~~~~V~~~~V~GeHGdt~Vp~~S~~~I~G~pi~~~i~~----~~~~~~ei~~~v~~~~~~Ii~~kG~s~~~s~A 335 (439)
|+++|+++++|++ +||||||++|||+||+++|+|+|+.+++.+ .+|..+++.++++++|++|++.||+++|+ +|
T Consensus 151 a~~l~v~~~~V~~-~v~GeHG~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~kG~t~~~-~a 228 (299)
T TIGR01771 151 AEKLGVDPQSVHA-YIIGEHGDSEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRKGATYYG-IG 228 (299)
T ss_pred HHHhCcCcCeEEE-EEEecCCCceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhhcCCeeeHH-HH
Confidence 9999999999997 899999999999999999999999998754 13346789999999999999999999886 67
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCCCCCHHHHHHHHHHHHHHHH
Q 013619 336 VSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLA 411 (439)
Q Consensus 336 ~~i~~aI~~il~~~d~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~~L~~~E~~~l~~sa~~l~~ 411 (439)
.++++++++|+ .|+++++|+|++++| +||+ +|+|||+||++|++|+++++ +++|+++|+++|++|++.|++
T Consensus 229 ~a~~~~i~ail--~d~~~v~~~s~~~~g-~yg~-~~~~~s~P~~ig~~Gv~~i~-~l~L~~~E~~~l~~s~~~ik~ 299 (299)
T TIGR01771 229 MAVARIVEAIL--HDENRVLPVSAYLDG-EYGI-KDVYIGVPAVLGRNGVEEII-ELPLSDEEKEAFQKSAETLKK 299 (299)
T ss_pred HHHHHHHHHHH--cCCCcEEEEEEEecc-cCCC-CCEEEEEEEEEeCCeeEEEc-cCCCCHHHHHHHHHHHHHHhC
Confidence 78888898888 689999999999999 7998 68999999999999999999 599999999999999999873
No 15
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=100.00 E-value=9.3e-67 Score=521.21 Aligned_cols=305 Identities=35% Similarity=0.571 Sum_probs=272.7
Q ss_pred HHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEEEEeCCcCCCCCCchhh
Q 013619 113 LFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAG 192 (439)
Q Consensus 113 a~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVIitag~~~kpg~~r~~ 192 (439)
.+.|+++++|+ |++|.|+|+|+..++++++|+++||.|++++......++++.+++++|||+||+|||.|++||++|.+
T Consensus 2 ~~~~~~g~~~g-~~~~~l~L~D~~~~~~~a~g~a~Dl~d~~~~~~~~~i~~~~~~~~~~daDiVVitaG~~~k~g~tR~d 80 (313)
T TIGR01756 2 SHWIANGDLYG-NRPVCLHLLEIPPALNRLEALAMELEDCAFPNLAGTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRAD 80 (313)
T ss_pred cceeccCcccC-CCeEEEEEecCCCccchhHhHHHHHHHhccccCCceEecCCHHHHhCCCCEEEECCCCCCCcCCCHHH
Confidence 46788899999 89999999887777799999999999998444333334444447999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHH-HHCCCCCCCceeccccchHHHHHHHHHHHhCCCcccce
Q 013619 193 LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICL-KNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271 (439)
Q Consensus 193 ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~-k~s~~~p~kvig~gt~LDs~R~~~~lA~~lgv~~~~V~ 271 (439)
++..|++|+++++++|++++.++++||++|||+|+||++++ +.+ ++|+++||+||.||++||+++||++++++|++|+
T Consensus 81 ll~~N~~I~~~i~~~i~~~a~~~~ivivvtNPvDv~t~v~~~~~s-g~p~~vig~gt~LDsaR~r~~la~~l~v~~~~V~ 159 (313)
T TIGR01756 81 LLTKNTPIFKATGEALSEYAKPTVKVLVIGNPVNTNCLVAMLHAP-KLSAENFSSLCMLDHNRAVSRIASKLKVPVDHIY 159 (313)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCchHHHHHHHHHHcC-CCCHHHEEecccHHHHHHHHHHHHHhCcChhhee
Confidence 99999999999999999995356899999999999999994 765 8998899999999999999999999999999998
Q ss_pred eeEEEeccCCcceecccccee--cCcchhhh--hhhccccHHHHHHHHHHhHHHHHHhcCCccHHHHHHHHHHHHHHhhc
Q 013619 272 NMTIWGNHSTTQVPDFLNARI--NGLPVKEI--IKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVT 347 (439)
Q Consensus 272 ~~~V~GeHGdt~Vp~~S~~~I--~G~pi~~~--i~~~~~~~~ei~~~v~~~~~~Ii~~kG~s~~~s~A~~i~~aI~~il~ 347 (439)
+++||||||++|||+||+++| +|.|+..+ +. .+|..+++.++++++|++|++.||.++|+.+|.++++++++|+.
T Consensus 160 ~~~V~GeHG~s~vp~~S~~~V~~~G~~~~~~~~~~-~~~~~~~i~~~v~~~g~~Ii~~kg~t~~~~~a~ai~~iv~ail~ 238 (313)
T TIGR01756 160 HVVVWGNHAESMVADLTHAEFTKNGKHQKVFDELC-RDYPEPDFFEVIAQRAWKILEMRGFTSAASPVKASLQHMKAWLF 238 (313)
T ss_pred eeEEEECCCCceeecccccEEecCCeehhHhhhcC-cHhHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHHHhc
Confidence 867999999999999999999 99996544 42 24668899999999999999999999998777899999999997
Q ss_pred CCCCCcEEEEeeeeCC-CccCCCCceEEEEEEEEcCCCceEeecCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013619 348 PTPEGDWFSSGVYTNG-NPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLT 420 (439)
Q Consensus 348 ~~d~~~v~~~sv~~~G-~~yGip~dv~~svPv~ig~~Gv~~iv~~~~L~~~E~~~l~~sa~~l~~~~~~v~~~~ 420 (439)
++|+++++|+||+++| .+||+|+|++||+||++|++|+++++++++|+++|+++|++|+++|++|++++.+++
T Consensus 239 ~~~~~~i~pvsv~l~~~g~YGi~~~v~~s~P~vig~~Gv~~ive~l~L~~~E~~~l~~Sa~~l~~e~~~~~~~~ 312 (313)
T TIGR01756 239 GTRPGEVLSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVENFELNPWLKTKLAQTEKDLFEERETALKAL 312 (313)
T ss_pred CCCCCeEEEEEEEecCCCccCCCCCEEEEEEEEEeCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6688999999999852 279998899999999999999999996599999999999999999999999998865
No 16
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.7e-66 Score=518.57 Aligned_cols=303 Identities=20% Similarity=0.306 Sum_probs=274.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEe-cCcccccCCC
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDA 173 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~dA 173 (439)
+.+||+|||| |+||+++++.|+.+++.++ |.| +|+++++++|+++||+|+. ++.....+. +++|++++||
T Consensus 2 ~~~Ki~IiGa-G~VG~~~a~~l~~~~~~~e---l~L----iD~~~~~~~g~a~Dl~~~~-~~~~~~~v~~~~dy~~~~~a 72 (312)
T cd05293 2 PRNKVTVVGV-GQVGMACAISILAKGLADE---LVL----VDVVEDKLKGEAMDLQHGS-AFLKNPKIEADKDYSVTANS 72 (312)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCE---EEE----EeCCccHHHHHHHHHHHhh-ccCCCCEEEECCCHHHhCCC
Confidence 4579999996 9999999999999998864 766 5777889999999999998 444322443 5789999999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeccccchH
Q 013619 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (439)
Q Consensus 174 DiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvig~gt~LDs 252 (439)
|+||+++|.|++|||+|.+++.+|++|++++++.|+++ +|++++|++|||+|++|+++++++ ++|+ |+||+||.||+
T Consensus 73 divvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~d~~t~~~~k~s-g~p~~~viG~gt~Ld~ 150 (312)
T cd05293 73 KVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNPVDIMTYVAWKLS-GLPKHRVIGSGCNLDS 150 (312)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccChHHHHHHHHHHHh-CCCHHHEEecCchHHH
Confidence 99999999999999999999999999999999999999 799999999999999999999998 7887 88999999999
Q ss_pred HHHHHHHHHHhCCCcccceeeEEEeccCCcceeccccceecCcchhhhhhh-----ccccHHHHHHHHHHhHHHHHHhcC
Q 013619 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD-----HKWLEEGFTETIQKRGGLLIKKWG 327 (439)
Q Consensus 253 ~R~~~~lA~~lgv~~~~V~~~~V~GeHGdt~Vp~~S~~~I~G~pi~~~i~~-----~~~~~~ei~~~v~~~~~~Ii~~kG 327 (439)
+|++++||+++|+++++|++ +||||||++|||+||+++|+|+|+.+++.. .+...+++.++++++|++|++.||
T Consensus 151 ~R~~~~la~~l~v~~~~v~~-~v~GeHG~s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kg 229 (312)
T cd05293 151 ARFRYLIAERLGVAPSSVHG-WIIGEHGDSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLKG 229 (312)
T ss_pred HHHHHHHHHHhCCChhhEEE-EEeecCCCCccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999997 899999999999999999999999998632 111247899999999999999999
Q ss_pred CccHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCCCCCHHHHHHHHHHHH
Q 013619 328 RSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQ 407 (439)
Q Consensus 328 ~s~~~s~A~~i~~aI~~il~~~d~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~~L~~~E~~~l~~sa~ 407 (439)
.++|+ +|.++++.+++|+ +|++.++|++++++| +||+|+|++||+||++|++|+++++ .++|+++|+++|++|++
T Consensus 230 ~t~~~-~a~a~~~ii~ail--~d~~~~~~vsv~~~g-~yg~~~d~~~svP~~ig~~Gi~~i~-~l~L~~~E~~~l~~s~~ 304 (312)
T cd05293 230 YTSWA-IGLSVADLVDAIL--RNTGRVHSVSTLVKG-LHGIEDEVFLSLPCILGENGITHVI-KQPLTEEEQEKLQKSAD 304 (312)
T ss_pred CchHH-HHHHHHHHHHHHH--cCCCeEEEEEEEeCC-ccCCCCCeEEEEeEEEeCCceEEEe-cCCCCHHHHHHHHHHHH
Confidence 98885 6788888898888 688999999999999 7999999999999999999999999 59999999999999999
Q ss_pred HHHHHHH
Q 013619 408 ELLAEKK 414 (439)
Q Consensus 408 ~l~~~~~ 414 (439)
.|++..+
T Consensus 305 ~i~~~~~ 311 (312)
T cd05293 305 TLWEVQK 311 (312)
T ss_pred HHHHHhh
Confidence 9998654
No 17
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=100.00 E-value=3.7e-66 Score=518.57 Aligned_cols=305 Identities=22% Similarity=0.345 Sum_probs=278.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCC
Q 013619 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (439)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (439)
++.+||+|||| |+||+++++.|+..+++++ |.| +|+++++++|+++||+|+. ++..++.+++++|++++||
T Consensus 4 ~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~e---l~L----~D~~~~~~~g~~~Dl~~~~-~~~~~~~i~~~~~~~~~~a 74 (315)
T PRK00066 4 KQHNKVVLVGD-GAVGSSYAYALVNQGIADE---LVI----IDINKEKAEGDAMDLSHAV-PFTSPTKIYAGDYSDCKDA 74 (315)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCCE---EEE----EeCCCchhHHHHHHHHhhc-cccCCeEEEeCCHHHhCCC
Confidence 45689999996 9999999999999998864 766 5778899999999999998 5555678888999999999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeccccchH
Q 013619 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (439)
Q Consensus 174 DiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvig~gt~LDs 252 (439)
|+||+++|.|++||++|.+++..|++|++++++.++++ +|++++|++|||+|++|+++++++ ++|+ |+||+||.||+
T Consensus 75 divIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~-~~~~~vivvsNP~d~~~~~~~k~s-g~p~~~viG~gt~LDs 152 (315)
T PRK00066 75 DLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMAS-GFDGIFLVASNPVDILTYATWKLS-GFPKERVIGSGTSLDS 152 (315)
T ss_pred CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCcHHHHHHHHHHHh-CCCHHHEeecCchHHH
Confidence 99999999999999999999999999999999999999 699999999999999999999998 6887 88999999999
Q ss_pred HHHHHHHHHHhCCCcccceeeEEEeccCCcceeccccceecCcchhhhhhhcccc----HHHHHHHHHHhHHHHHHhcCC
Q 013619 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL----EEGFTETIQKRGGLLIKKWGR 328 (439)
Q Consensus 253 ~R~~~~lA~~lgv~~~~V~~~~V~GeHGdt~Vp~~S~~~I~G~pi~~~i~~~~~~----~~ei~~~v~~~~~~Ii~~kG~ 328 (439)
+|+++++|+++|+++++|++ +||||||+++||+||+++|+|+|+.+++.+..|. .+++.+++++++++|++.||+
T Consensus 153 ~R~~~~la~~l~v~~~~V~~-~viGeHG~s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~kg~ 231 (315)
T PRK00066 153 ARFRYMLSEKLDVDPRSVHA-YIIGEHGDTEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEKKGA 231 (315)
T ss_pred HHHHHHHHHHhCCCcccEEE-EEEecCCCcceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 99999999999999999997 8999999999999999999999999988654443 347999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCCCCCHHHHHHHHHHHHH
Q 013619 329 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQE 408 (439)
Q Consensus 329 s~~~s~A~~i~~aI~~il~~~d~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~~L~~~E~~~l~~sa~~ 408 (439)
++|+ +|.++++.+.+|+ .|++.++|+|++++| +|| ++|+|||+||++|++|+++++ +++|+++|+++|++|+++
T Consensus 232 t~~~-~a~~~~~i~~ail--~~~~~v~~~sv~~~g-~yg-~~~v~~S~Pv~ig~~Gv~~i~-~l~L~~~E~~~L~~s~~~ 305 (315)
T PRK00066 232 TYYG-IAMALARITKAIL--NNENAVLPVSAYLEG-QYG-EEDVYIGVPAVVNRNGIREIV-ELPLNDDEKQKFAHSADV 305 (315)
T ss_pred ehHH-HHHHHHHHHHHHH--cCCCeEEEEEEEecc-ccC-CCCEEEEeEEEEeCCcEEEEc-CCCCCHHHHHHHHHHHHH
Confidence 9874 6667777777777 689999999999999 899 589999999999999999999 699999999999999999
Q ss_pred HHHHHHHH
Q 013619 409 LLAEKKCV 416 (439)
Q Consensus 409 l~~~~~~v 416 (439)
|++..+.+
T Consensus 306 l~~~~~~~ 313 (315)
T PRK00066 306 LKEIMDEA 313 (315)
T ss_pred HHHHHHHh
Confidence 99887643
No 18
>PLN00135 malate dehydrogenase
Probab=100.00 E-value=2.5e-66 Score=516.99 Aligned_cols=302 Identities=40% Similarity=0.638 Sum_probs=273.5
Q ss_pred HHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHH
Q 013619 116 LAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLD 195 (439)
Q Consensus 116 L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVIitag~~~kpg~~r~~ll~ 195 (439)
|+++++|+.+++|.|+|+|++.++++++|++|||.|+++++...+++++++|++++|||+||++||.|++||++|.+++.
T Consensus 2 ~~~g~~~g~~~~~~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~ 81 (309)
T PLN00135 2 IARGVMLGPDQPVILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKGVNIAVMVGGFPRKEGMERKDVMS 81 (309)
T ss_pred cccccccCCCCeEEEEEecCcccccchhhHHHHHHhhhHHhcCCcEecCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHH
Confidence 56788999778999999876666699999999999998666556666666699999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCceeccccchHHHHHHHHHHHhCCCcccceeeEE
Q 013619 196 INGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275 (439)
Q Consensus 196 ~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~kvig~gt~LDs~R~~~~lA~~lgv~~~~V~~~~V 275 (439)
.|++|++++++.|+++++|++++|++|||+|+|||++++.++.+++|+||+||.||++||+++||+++|+++++|+.++|
T Consensus 82 ~N~~I~~~i~~~i~~~~~p~aivivvsNPvDv~t~~~~~~sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V 161 (309)
T PLN00135 82 KNVSIYKSQASALEKHAAPDCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVII 161 (309)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEeCCcHHHHHHHHHHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEE
Confidence 99999999999999964799999999999999999999999544449999999999999999999999999999965699
Q ss_pred EeccCCcceecccccee----cCcchhhhhhhccccHHHHHHHHHHhHHHHHHh-cCCccHHHHHHHHHHHHHHhhcCCC
Q 013619 276 WGNHSTTQVPDFLNARI----NGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK-WGRSSAASTAVSIVDAMKSLVTPTP 350 (439)
Q Consensus 276 ~GeHGdt~Vp~~S~~~I----~G~pi~~~i~~~~~~~~ei~~~v~~~~~~Ii~~-kG~s~~~s~A~~i~~aI~~il~~~d 350 (439)
|||||++|||+||+++| +|+|+.+++.+.+|+.+++.+++++++++|++. +|+++| ++|.++++++++|+.++|
T Consensus 162 lGeHG~s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~kg~t~~-~ia~a~~~iv~ai~~~~~ 240 (309)
T PLN00135 162 WGNHSSTQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKARKLSSAL-SAASSACDHIRDWVLGTP 240 (309)
T ss_pred EEcCCCceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHccCccHHH-HHHHHHHHHHHHHHhCCc
Confidence 99999999999999999 999999987665577899999999999999996 666655 588899999999885447
Q ss_pred CCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013619 351 EGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLT 420 (439)
Q Consensus 351 ~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~~L~~~E~~~l~~sa~~l~~~~~~v~~~~ 420 (439)
++.++|+|++++| +||+|+|++||+||+++++|++.++ +++|+++|+++|++|+++|+++++.+.|.+
T Consensus 241 ~~~v~~vsv~~~g-~YGi~~~v~~s~P~vlg~~gve~v~-~l~L~~~E~~~l~~S~~~lk~~~~~~~~~~ 308 (309)
T PLN00135 241 EGTWVSMGVYSDG-SYGVPPGLIYSFPVTCEKGEWSIVQ-GLSIDEFSRKKMDATAKELKEEKELAYSCL 308 (309)
T ss_pred CCeEEEEEEEecC-ccCCcCCeEEEEEEEEECCEEEEec-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999 8999889999999999999999888 699999999999999999999999998765
No 19
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=4e-66 Score=520.26 Aligned_cols=319 Identities=50% Similarity=0.768 Sum_probs=284.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (439)
+|.||+||||+|+||+++++.|+.+++++.++...|+++|.+.+.++++|+++|+.|+++++..++++..+.+++++|||
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aD 80 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVD 80 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCC
Confidence 47899999988999999999999999885212223444544445567899999999997666666766666689999999
Q ss_pred EEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCceeccccchHHH
Q 013619 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENR 254 (439)
Q Consensus 175 iVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~kvig~gt~LDs~R 254 (439)
+||++||.|++++++|.+++..|++|++++++.|+++++|++++|++|||+|+||+++++.++++|+++||+||.||++|
T Consensus 81 iVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~~~~~~~~~ig~gt~LDs~R 160 (325)
T cd01336 81 VAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALILLKYAPSIPKENFTALTRLDHNR 160 (325)
T ss_pred EEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHHHHHcCCCCHHHEEeeehHHHHH
Confidence 99999999999999999999999999999999999995589999999999999999999998789887799999999999
Q ss_pred HHHHHHHHhCCCcccceeeEEEeccCCcceeccccceec----CcchhhhhhhccccHHHHHHHHHHhHHHHHHh-cCCc
Q 013619 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIN----GLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK-WGRS 329 (439)
Q Consensus 255 ~~~~lA~~lgv~~~~V~~~~V~GeHGdt~Vp~~S~~~I~----G~pi~~~i~~~~~~~~ei~~~v~~~~~~Ii~~-kG~s 329 (439)
|+++||+++++++++|++++||||||++|||+||+++|+ |+|+.+++.+.+|+.+++.+++++++++|++. +|.+
T Consensus 161 ~r~~la~~l~v~~~~v~~~~V~GeHG~s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~~~g~t 240 (325)
T cd01336 161 AKSQIALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAVIKARKLSS 240 (325)
T ss_pred HHHHHHHHhCcChhhceEeEEEEcCCCCeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHHHHHccccch
Confidence 999999999999999987679999999999999999999 99999998776677899999999999999996 4455
Q ss_pred cHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCCCCCHHHHHHHHHHHHHH
Q 013619 330 SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQEL 409 (439)
Q Consensus 330 ~~~s~A~~i~~aI~~il~~~d~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~~L~~~E~~~l~~sa~~l 409 (439)
. .++|.++++.+++|+.+.+++.++|+|++++| +||+|+|++||+||++|++|+++++ +++|+++|+++|++|++.|
T Consensus 241 ~-~~~a~~~~~i~~ail~~~~~~~v~~vs~~~~g-~yg~~~~v~~s~P~~ig~~Gv~~i~-~~~L~~~E~~~l~~s~~~l 317 (325)
T cd01336 241 A-MSAAKAICDHVHDWWFGTPEGEFVSMGVYSDG-SYGVPEGLIFSFPVTCKNGKWKIVQ-GLSIDDFSREKIDATAKEL 317 (325)
T ss_pred H-HHHHHHHHHHHHHHHcCCCCCeEEEEEEecCC-CcCCCCceEEEEEEEEeCCEEEEec-CCCCCHHHHHHHHHHHHHH
Confidence 4 46889999999999953346999999999999 8999999999999999999999998 6999999999999999999
Q ss_pred HHHHHHH
Q 013619 410 LAEKKCV 416 (439)
Q Consensus 410 ~~~~~~v 416 (439)
+++++.+
T Consensus 318 ~~e~~~~ 324 (325)
T cd01336 318 VEEKETA 324 (325)
T ss_pred HHHHHhh
Confidence 9999875
No 20
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=100.00 E-value=2.7e-64 Score=503.68 Aligned_cols=301 Identities=22% Similarity=0.354 Sum_probs=273.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (439)
+||+|||+ |+||+++++.|+..++..+ |.| +|+++++++++++||+|+.+.....+.+..++++++++||+|
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~e---i~l----~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIV 72 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADE---LVL----IDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIV 72 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCE---EEE----EeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEE
Confidence 48999995 9999999999999887653 777 577889999999999998743434556667889999999999
Q ss_pred EEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeccccchHHHH
Q 013619 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (439)
Q Consensus 177 Iitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvig~gt~LDs~R~ 255 (439)
|+++|.|++||++|.+++.+|++|++++++.|+++ +|+++||++|||+|+||+++++++ ++|+ |+||+||.||++|+
T Consensus 73 Iitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~-~~~~~vivvsNP~d~~~~~~~~~~-g~p~~~v~g~gt~LDs~R~ 150 (306)
T cd05291 73 VITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKAS-GFDGIFLVASNPVDVITYVVQKLS-GLPKNRVIGTGTSLDTARL 150 (306)
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEecChHHHHHHHHHHHh-CcCHHHEeeccchHHHHHH
Confidence 99999999999999999999999999999999998 799999999999999999999997 7887 88999999999999
Q ss_pred HHHHHHHhCCCcccceeeEEEeccCCcceeccccceecCcchhhhhhhcccc---HHHHHHHHHHhHHHHHHhcCCccHH
Q 013619 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL---EEGFTETIQKRGGLLIKKWGRSSAA 332 (439)
Q Consensus 256 ~~~lA~~lgv~~~~V~~~~V~GeHGdt~Vp~~S~~~I~G~pi~~~i~~~~~~---~~ei~~~v~~~~~~Ii~~kG~s~~~ 332 (439)
+++||+++|+++++|++ +||||||+++||+||+++|+|+|+.+++.+..|. .+++.++++++|++|++.||+++|+
T Consensus 151 ~~~la~~l~v~~~~v~~-~V~G~Hg~s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~kg~t~~~ 229 (306)
T cd05291 151 RRALAEKLNVDPRSVHA-YVLGEHGDSQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIINGKGATYYG 229 (306)
T ss_pred HHHHHHHHCCCcccceE-EEEecCCCceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHHccCccHHH
Confidence 99999999999999997 8999999999999999999999999988654454 5789999999999999999998875
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCCCCCHHHHHHHHHHHHHHHHH
Q 013619 333 STAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAE 412 (439)
Q Consensus 333 s~A~~i~~aI~~il~~~d~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~~L~~~E~~~l~~sa~~l~~~ 412 (439)
+|.++++.+++|+ .|++.++|+|++++| +||. +|+|||+||++|++|+++++ +++|+++|+++|++|+++|++.
T Consensus 230 -~a~a~~~~~~ail--~~~~~v~~~s~~~~g-~yg~-~~v~~s~P~~ig~~Gv~~i~-~~~l~~~E~~~l~~s~~~l~~~ 303 (306)
T cd05291 230 -IATALARIVKAIL--NDENAILPVSAYLDG-EYGE-KDVYIGVPAIIGRNGVEEVI-ELDLTEEEQEKFEKSADIIKEN 303 (306)
T ss_pred -HHHHHHHHHHHHH--cCCCEEEEEEEEecc-ccCC-CCEEEEEEEEEeCCCEEEEE-CCCCCHHHHHHHHHHHHHHHHH
Confidence 5668888888888 689999999999999 7995 89999999999999999999 5999999999999999999986
Q ss_pred HH
Q 013619 413 KK 414 (439)
Q Consensus 413 ~~ 414 (439)
.+
T Consensus 304 ~~ 305 (306)
T cd05291 304 IK 305 (306)
T ss_pred hh
Confidence 54
No 21
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=100.00 E-value=1.5e-63 Score=496.96 Aligned_cols=297 Identities=24% Similarity=0.347 Sum_probs=273.2
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEe-cCcccccCCCcEEE
Q 013619 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEWAL 177 (439)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~dADiVI 177 (439)
|+|||| |+||+++++.|+..+++++ |.| +|+++++++|+++||+|+...+ ...++. +++|++++|||+||
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~e---l~l----~D~~~~~~~g~~~DL~~~~~~~-~~~~i~~~~~~~~l~~aDiVI 71 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASE---LVL----VDVNEEKAKGDALDLSHASAFL-ATGTIVRGGDYADAADADIVV 71 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCE---EEE----EeCCccHHHHHHHhHHHhcccc-CCCeEEECCCHHHhCCCCEEE
Confidence 689995 9999999999999998864 777 5778899999999999998543 333443 46699999999999
Q ss_pred EeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeccccchHHHHH
Q 013619 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAK 256 (439)
Q Consensus 178 itag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvig~gt~LDs~R~~ 256 (439)
+++|.|++||++|.+++.+|+++++++++.|+++ +|++++|++|||+|+||+++++++ ++|+ |+||+||.||++|++
T Consensus 72 itag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~-~p~~~viv~sNP~d~~~~~~~~~s-g~~~~kviG~gt~lDs~r~~ 149 (300)
T cd00300 72 ITAGAPRKPGETRLDLINRNAPILRSVITNLKKY-GPDAIILVVSNPVDILTYVAQKLS-GLPKNRVIGSGTLLDSARFR 149 (300)
T ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccChHHHHHHHHHHHh-CcCHHHEEecCCcHHHHHHH
Confidence 9999999999999999999999999999999999 699999999999999999999998 5886 899999999999999
Q ss_pred HHHHHHhCCCcccceeeEEEeccCCcceeccccceecCcchhhhhhhccccHHHHHHHHHHhHHHHHHhcCCccHHHHHH
Q 013619 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAV 336 (439)
Q Consensus 257 ~~lA~~lgv~~~~V~~~~V~GeHGdt~Vp~~S~~~I~G~pi~~~i~~~~~~~~ei~~~v~~~~~~Ii~~kG~s~~~s~A~ 336 (439)
+++|+++|+++++|++ +||||||++|||+||+++|+|+|+.+++++.+|..+++.+++++++++|++.||+++|+ +|.
T Consensus 150 ~~la~~l~v~~~~v~~-~viGeHg~s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~~kg~t~~~-~a~ 227 (300)
T cd00300 150 SLLAEKLDVDPQSVHA-YVLGEHGDSQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRLKGATNYG-IAT 227 (300)
T ss_pred HHHHHHhCCCcccEEE-EEEeccCCceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHccCcchHH-HHH
Confidence 9999999999999997 89999999999999999999999999987766888999999999999999999998874 788
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCCCCCHHHHHHHHHHHHHHHHHH
Q 013619 337 SIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEK 413 (439)
Q Consensus 337 ~i~~aI~~il~~~d~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~~L~~~E~~~l~~sa~~l~~~~ 413 (439)
++++.+++|+ +|+++++|+|++++| +||. +|++||+||++|++|+++++ +++|+++|+++|++|+++|++..
T Consensus 228 a~~~~~~ai~--~~~~~v~~~s~~~~g-~yg~-~~~~~s~Pv~ig~~Gi~~i~-~l~L~~~E~~~l~~s~~~l~~~~ 299 (300)
T cd00300 228 AIADIVKSIL--LDERRVLPVSAVQEG-QYGI-EDVALSVPAVVGREGVVRIL-EIPLTEDEEAKLQKSAEALKEVL 299 (300)
T ss_pred HHHHHHHHHH--cCCCeEEEEEEEecC-ccCC-CCEEEEEEEEEeCCCeEEEe-cCCCCHHHHHHHHHHHHHHHHHh
Confidence 8999999988 689999999999999 8994 89999999999999999999 59999999999999999998754
No 22
>PTZ00117 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-61 Score=486.97 Aligned_cols=309 Identities=23% Similarity=0.337 Sum_probs=276.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEe-cCcccccCC
Q 013619 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFED 172 (439)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~d 172 (439)
.+.+||+|||| |+||+++++.++..++ . +|.| +|+++++++|.++|+.|+.........+. +++|++++|
T Consensus 3 ~~~~KI~IIGa-G~vG~~ia~~l~~~~~-~---~l~L----~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l~~ 73 (319)
T PTZ00117 3 VKRKKISMIGA-GQIGSTVALLILQKNL-G---DVVL----YDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDIKD 73 (319)
T ss_pred CCCcEEEEECC-CHHHHHHHHHHHHCCC-C---eEEE----EECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHhCC
Confidence 35679999996 9999999999998886 3 2666 46777888999999999863222334443 478899999
Q ss_pred CcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Cceeccccch
Q 013619 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (439)
Q Consensus 173 ADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvig~gt~LD 251 (439)
||+||+++|.|+++|++|.|++..|.++++++++.|+++ +|++|+|++|||+|++|+++++++ ++|+ |+||+||.||
T Consensus 74 ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivvsNP~di~t~~~~~~s-~~p~~rviG~gt~ld 151 (319)
T PTZ00117 74 SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICVTNPLDCMVKVFQEKS-GIPSNKICGMAGVLD 151 (319)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecChHHHHHHHHHHhh-CCCcccEEEecchHH
Confidence 999999999999999999999999999999999999999 799999999999999999999988 7885 9999999999
Q ss_pred HHHHHHHHHHHhCCCcccceeeEEEeccCCcceeccccceecCcchhhhhhhcccc---HHHHHHHHHHhHHHHHHh--c
Q 013619 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL---EEGFTETIQKRGGLLIKK--W 326 (439)
Q Consensus 252 s~R~~~~lA~~lgv~~~~V~~~~V~GeHGdt~Vp~~S~~~I~G~pi~~~i~~~~~~---~~ei~~~v~~~~~~Ii~~--k 326 (439)
++|++++||+++|+++++|++ +|+||||++|||+||+++|+|+|+.+++++..|. .+++.+++++++++|++. |
T Consensus 152 s~R~~~~la~~l~v~~~~v~~-~viGeHg~~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~~k 230 (319)
T PTZ00117 152 SSRFRCNLAEKLGVSPGDVSA-VVIGGHGDLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLLKK 230 (319)
T ss_pred HHHHHHHHHHHhCCCcccceE-EEeecCCCcEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999996 8999999999999999999999999987654454 467899999999999996 6
Q ss_pred CCccHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCCCCCHHHHHHHHHHH
Q 013619 327 GRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTE 406 (439)
Q Consensus 327 G~s~~~s~A~~i~~aI~~il~~~d~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~~L~~~E~~~l~~sa 406 (439)
|.+.| ++|.++++++.+|+ .|+++++|+|++++| +||++ |++||+||++|++|+++++ +++|+++||++|++|+
T Consensus 231 g~t~~-~~a~a~~~~~~ail--~~~~~v~~~s~~~~g-~yg~~-~~~~s~P~~ig~~Gv~~i~-~l~l~~~E~~~l~~s~ 304 (319)
T PTZ00117 231 GSAFF-APAAAIVAMIEAYL--KDEKRVLVCSVYLNG-QYNCK-NLFVGVPVVIGGKGIEKVI-ELELNAEEKELFDKSI 304 (319)
T ss_pred CChHH-HHHHHHHHHHHHHh--cCCCeEEEEEEEecc-ccCCC-CeEEEEEEEEeCCeEEEEe-CCCCCHHHHHHHHHHH
Confidence 65554 58888999999988 588999999999999 79994 9999999999999999999 5999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 013619 407 QELLAEKKCVAHLT 420 (439)
Q Consensus 407 ~~l~~~~~~v~~~~ 420 (439)
+.|++..+.+-||+
T Consensus 305 ~~l~~~~~~~~~~~ 318 (319)
T PTZ00117 305 ESIQELTQKAKALI 318 (319)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998885
No 23
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=3.8e-61 Score=481.31 Aligned_cols=300 Identities=22% Similarity=0.343 Sum_probs=273.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (439)
|||+|||+ |.||+++++.|+..++..+ +.| +|++++++++.++|+.|+. ++.....+.++++++++|||+|
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~e---v~l----~D~~~~~~~g~a~dl~~~~-~~~~~~~i~~~d~~~l~~aDiV 71 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASE---IVL----VDINKAKAEGEAMDLAHGT-PFVKPVRIYAGDYADCKGADVV 71 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCE---EEE----EECCchhhhhHHHHHHccc-cccCCeEEeeCCHHHhCCCCEE
Confidence 69999996 9999999999999887654 766 5778888999999999986 4544556777899999999999
Q ss_pred EEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeccccchHHHH
Q 013619 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (439)
Q Consensus 177 Iitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvig~gt~LDs~R~ 255 (439)
|+++|.|++++++|.+++..|+++++++++.|+++ +|++++++++||+|+||+++++.+ ++|+ |+||+||.||++|+
T Consensus 72 iita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~-~~~giiiv~tNP~d~~~~~~~~~s-g~p~~~viG~gt~LDs~R~ 149 (308)
T cd05292 72 VITAGANQKPGETRLDLLKRNVAIFKEIIPQILKY-APDAILLVVTNPVDVLTYVAYKLS-GLPPNRVIGSGTVLDTARF 149 (308)
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHHHHH-CcCHHHeecccchhhHHHH
Confidence 99999999999999999999999999999999999 699999999999999999999998 7887 88999999999999
Q ss_pred HHHHHHHhCCCcccceeeEEEeccCCcceeccccceecCcchhhhhhhc--c---ccHHHHHHHHHHhHHHHHHhcCCcc
Q 013619 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH--K---WLEEGFTETIQKRGGLLIKKWGRSS 330 (439)
Q Consensus 256 ~~~lA~~lgv~~~~V~~~~V~GeHGdt~Vp~~S~~~I~G~pi~~~i~~~--~---~~~~ei~~~v~~~~~~Ii~~kG~s~ 330 (439)
+++||+++++++++|++ +||||||++|||+||+++|+|+|+.+++... . +..+++.+++++++++|++.||.++
T Consensus 150 ~~~la~~~~v~~~~v~~-~viGeHg~~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~kg~t~ 228 (308)
T cd05292 150 RYLLGEHLGVDPRSVHA-YIIGEHGDSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERKGATY 228 (308)
T ss_pred HHHHHHHhCCCccceec-eeeccCCCcEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHcCCccH
Confidence 99999999999999997 8999999999999999999999999887542 1 2357899999999999999999988
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCCCCCHHHHHHHHHHHHHHH
Q 013619 331 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELL 410 (439)
Q Consensus 331 ~~s~A~~i~~aI~~il~~~d~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~~L~~~E~~~l~~sa~~l~ 410 (439)
|+ +|.++++.+++|+ .|++.++|+|++++| +||+ +|+|||+||+||++|+++++ +++|+++|+++|++|++.|+
T Consensus 229 ~~-~a~a~~~i~~ail--~~~~~v~~~s~~~~g-~yg~-~~~~~s~P~~ig~~Gv~~i~-~~~L~~~E~~~l~~s~~~i~ 302 (308)
T cd05292 229 YA-IGLALARIVEAIL--RDENSVLTVSSLLDG-QYGI-KDVALSLPCIVGRSGVERVL-PPPLSEEEEEALRASAEVLK 302 (308)
T ss_pred HH-HHHHHHHHHHHHH--cCCCcEEEEEEEEcc-cCCC-CCEEEEEEEEEeCCceEEec-CCCCCHHHHHHHHHHHHHHH
Confidence 75 5677888888888 689999999999999 7998 79999999999999999999 59999999999999999999
Q ss_pred HHHH
Q 013619 411 AEKK 414 (439)
Q Consensus 411 ~~~~ 414 (439)
+..+
T Consensus 303 ~~~~ 306 (308)
T cd05292 303 EAIE 306 (308)
T ss_pred HHHh
Confidence 8765
No 24
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=100.00 E-value=1.5e-60 Score=477.21 Aligned_cols=305 Identities=24% Similarity=0.372 Sum_probs=269.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEe-cCcccccCCCcE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEW 175 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~dADi 175 (439)
|||+|+||+|+||+++++.|+..+++++ |.| +|.+.+.+++++.++||.|+........++. +++|++++|||+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~---v~l--vd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~l~~aDi 75 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKE---INL--ISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSDVAGSDI 75 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCE---EEE--EECcccccccccccchhhhchhccCCCcEEEECCCHHHhCCCCE
Confidence 6999999779999999999999988753 655 3333344899999999998753222223443 346899999999
Q ss_pred EEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeccccchHHH
Q 013619 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENR 254 (439)
Q Consensus 176 VIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvig~gt~LDs~R 254 (439)
||+++|.|++||++|.+++..|+++++++++.|+++ +|+++||+++||+|++|+++++++ ++|+ |+||+||.||++|
T Consensus 76 Viitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~-~~~~~viv~~npvd~~t~~~~~~~-g~~~~~viG~gt~LDs~R 153 (309)
T cd05294 76 VIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEF-APDTKILVVTNPVDVMTYKALKES-GFDKNRVFGLGTHLDSLR 153 (309)
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCchHHHHHHHHHhc-CCCHHHEeeccchHHHHH
Confidence 999999999999999999999999999999999998 699999999999999999999999 5887 8999999999999
Q ss_pred HHHHHHHHhCCCcccceeeEEEeccCCcceeccccceecCcchhhhhhhccccHHHHHHHHHHhHHHHHHhcCCccHHHH
Q 013619 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAST 334 (439)
Q Consensus 255 ~~~~lA~~lgv~~~~V~~~~V~GeHGdt~Vp~~S~~~I~G~pi~~~i~~~~~~~~ei~~~v~~~~~~Ii~~kG~s~~~s~ 334 (439)
++++||+++++++++|++ +|+||||++|||+||+++|+|+|+.++++..++..+++.++++++|++|++.||+++| ++
T Consensus 154 ~~~~la~~l~v~~~~v~~-~viGeHg~s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~kg~t~~-~~ 231 (309)
T cd05294 154 FKVAIAKHFNVHISEVHT-RIIGEHGDSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISLKGGSEY-GP 231 (309)
T ss_pred HHHHHHHHHCcChHHeEE-EEEecCCCceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHhcCCchh-hH
Confidence 999999999999999997 8999999999999999999999999986533455688999999999999999999877 47
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEeeeeCCCcc-CCCCceEEEEEEEEcCCCceEeecCCCCCHHHHHHHHHHHHHHHHHH
Q 013619 335 AVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPY-GIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEK 413 (439)
Q Consensus 335 A~~i~~aI~~il~~~d~~~v~~~sv~~~G~~y-Gip~dv~~svPv~ig~~Gv~~iv~~~~L~~~E~~~l~~sa~~l~~~~ 413 (439)
|.++++.+++|+ +|++.++|++|+++| +| |++ |+++|+||++|++|+++++ +++|+++|+++|++|++.|++..
T Consensus 232 a~~~~~ii~ail--~~~~~v~~vsv~~~g-~~~~~~-~~~~svP~~ig~~Gv~~i~-~l~l~~~E~~~l~~s~~~i~~~~ 306 (309)
T cd05294 232 ASAISNLVRTIA--NDERRILTVSTYLEG-EIDGIR-DVCIGVPVKLGKNGIEEIV-PIEMDDDEREAFRKSAEIVKKYT 306 (309)
T ss_pred HHHHHHHHHHHH--CCCCeEEEEEEEECC-ccCCCC-CeEEEeEEEEcCCccEEEe-CCCCCHHHHHHHHHHHHHHHHHH
Confidence 777777777777 689999999999999 66 996 9999999999999999999 59999999999999999999866
Q ss_pred HH
Q 013619 414 KC 415 (439)
Q Consensus 414 ~~ 415 (439)
+.
T Consensus 307 ~~ 308 (309)
T cd05294 307 RE 308 (309)
T ss_pred hc
Confidence 53
No 25
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=100.00 E-value=2.1e-60 Score=475.23 Aligned_cols=300 Identities=22% Similarity=0.358 Sum_probs=264.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEe-cCcccccCCCc
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAE 174 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~dAD 174 (439)
.|||+|||+ |.||+.+|+.++..++. + +.| +|++++..+|.++|+.|.........+++ +++|++++|||
T Consensus 1 ~~KV~VIGa-G~vG~~iA~~la~~g~~-~---Vvl----vDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~~~~aD 71 (305)
T TIGR01763 1 RKKISVIGA-GFVGATTAFRLAEKELA-D---LVL----LDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYADTANSD 71 (305)
T ss_pred CCEEEEECc-CHHHHHHHHHHHHcCCC-e---EEE----EeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHHhCCCC
Confidence 369999995 99999999999988764 2 666 46677788889999988752222222343 56788899999
Q ss_pred EEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeccccchHH
Q 013619 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (439)
Q Consensus 175 iVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvig~gt~LDs~ 253 (439)
+||+++|.|+++|++|.+++..|.+++++++++|.++ +|++++|++|||+|+||+++++++ ++|+ |+||+||.|||+
T Consensus 72 iVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~-~p~~~iIv~tNP~di~t~~~~~~s-g~~~~rviG~g~~lds~ 149 (305)
T TIGR01763 72 IVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEH-SPNPIIVVVSNPLDAMTYVAWQKS-GFPKERVIGQAGVLDSA 149 (305)
T ss_pred EEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHHHHH-CcCHHHEEEeccchHHH
Confidence 9999999999999999999999999999999999998 799999999999999999999998 6886 999999999999
Q ss_pred HHHHHHHHHhCCCcccceeeEEEeccCCcceeccccceecCcchhhhhhhccccHHHHHHHHHHhHHHHHHh--cCCccH
Q 013619 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK--WGRSSA 331 (439)
Q Consensus 254 R~~~~lA~~lgv~~~~V~~~~V~GeHGdt~Vp~~S~~~I~G~pi~~~i~~~~~~~~ei~~~v~~~~~~Ii~~--kG~s~~ 331 (439)
|++++||++|++++++|++ +|||||||+|||+||+++|+|+|+.+++.++. .+++.++++++|++|++. ||.+.|
T Consensus 150 R~~~~la~~l~v~~~~v~~-~v~GeHg~s~~~~wS~~~i~g~~~~~~~~~~~--~~~l~~~v~~~g~~ii~~~~kg~t~~ 226 (305)
T TIGR01763 150 RFRTFIAMELGVSVQDVTA-CVLGGHGDAMVPLVRYSTVAGIPVADLISAER--IAEIVERTRKGGGEIVNLLKQGSAYY 226 (305)
T ss_pred HHHHHHHHHhCcCHHHeee-eEEecCCCcEEeeeeeeEECCEEHHHhcCHHH--HHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 9999999999999999997 89999999999999999999999999875432 478999999999999996 556665
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCCCCCHHHHHHHHHHHHHHHH
Q 013619 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLA 411 (439)
Q Consensus 332 ~s~A~~i~~aI~~il~~~d~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~~L~~~E~~~l~~sa~~l~~ 411 (439)
++|.++++.+.+++ .|++.++|+|++++| +||+ +|+|+|+||++|++|+++++ +++|+++|+++|++|++.|++
T Consensus 227 -~~a~~~~~i~~ai~--~~~~~v~~~s~~~~~-~yg~-~~v~~s~P~~ig~~Gv~~i~-~~~l~~~E~~~l~~s~~~i~~ 300 (305)
T TIGR01763 227 -APAASVVEMVEAIL--KDRKRVLPCAAYLDG-QYGI-DGIYVGVPVILGKNGVEHIY-ELKLDQSELALLNKSAKIVDE 300 (305)
T ss_pred -HHHHHHHHHHHHHh--CCCCeEEEEEEEecc-cCCC-CceEEEEEEEEeCCeEEEEe-CCCCCHHHHHHHHHHHHHHHH
Confidence 46777777777777 689999999999999 8999 79999999999999999999 599999999999999999998
Q ss_pred HHHH
Q 013619 412 EKKC 415 (439)
Q Consensus 412 ~~~~ 415 (439)
..+.
T Consensus 301 ~~~~ 304 (305)
T TIGR01763 301 NCKM 304 (305)
T ss_pred HHhc
Confidence 7653
No 26
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=5.8e-60 Score=474.84 Aligned_cols=305 Identities=20% Similarity=0.292 Sum_probs=269.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEe-cCcccccC
Q 013619 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFE 171 (439)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~ 171 (439)
+.+++||+|||| |+||+++++.++..++. +|+| +|++++++++.++|+.|.........++. +++|++++
T Consensus 3 ~~~~~KI~IIGa-G~vG~~ia~~la~~gl~----~i~L----vDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l~ 73 (321)
T PTZ00082 3 MIKRRKISLIGS-GNIGGVMAYLIVLKNLG----DVVL----FDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDIA 73 (321)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCC----eEEE----EeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHhC
Confidence 456689999995 99999999999988873 2666 46777888999999999863222334554 47889999
Q ss_pred CCcEEEEeCCcCCCCCC-----chhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Ccee
Q 013619 172 DAEWALLIGAKPRGPGM-----ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFH 245 (439)
Q Consensus 172 dADiVIitag~~~kpg~-----~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvig 245 (439)
|||+||+++|.|++||+ +|.+++..|+++++++++.|+++ +|++++|++|||+|++++++++.+ ++|+ |+||
T Consensus 74 ~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~-~p~a~~iv~sNP~di~t~~~~~~s-g~p~~rviG 151 (321)
T PTZ00082 74 GSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKY-CPNAFVIVITNPLDVMVKLLQEHS-GLPKNKVCG 151 (321)
T ss_pred CCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHHHhc-CCChhhEEE
Confidence 99999999999999999 99999999999999999999999 699999999999999999999998 7875 9999
Q ss_pred ccccchHHHHHHHHHHHhCCCcccceeeEEEeccCCcceeccccceecCcchhhhhhhccc---cHHHHHHHHHHhHHHH
Q 013619 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW---LEEGFTETIQKRGGLL 322 (439)
Q Consensus 246 ~gt~LDs~R~~~~lA~~lgv~~~~V~~~~V~GeHGdt~Vp~~S~~~I~G~pi~~~i~~~~~---~~~ei~~~v~~~~~~I 322 (439)
+||.||++|++++||+++|+++++|++ +|+||||++|||+||+++|+|.|+.++++...+ ..+++.++++++|++|
T Consensus 152 lgt~lds~R~~~~la~~l~v~~~~v~~-~viGeHg~s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i 230 (321)
T PTZ00082 152 MAGVLDSSRLRTYIAEKLGVNPRDVHA-SVIGAHGDKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEI 230 (321)
T ss_pred ecCcccHHHHHHHHHHHhCCCccccee-eEEecCCCceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999997 899999999999999999999999998643211 2578999999999999
Q ss_pred HHh--cCCccHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCCCCCHHHHH
Q 013619 323 IKK--WGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRK 400 (439)
Q Consensus 323 i~~--kG~s~~~s~A~~i~~aI~~il~~~d~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~~L~~~E~~ 400 (439)
++. +|.+.| ++|.++++.+++|+ .|+++++|+|++++| +||+ +|+|+|+||++|++|+++++ +++|+++|++
T Consensus 231 ~~~~gkg~t~~-~ia~a~~~i~~ail--~d~~~v~~vs~~~~g-~yg~-~~v~~s~P~~ig~~Gv~~i~-~~~l~~~E~~ 304 (321)
T PTZ00082 231 VDLLGTGSAYF-APAAAAIEMAEAYL--KDKKRVLPCSAYLEG-QYGH-KDIYMGTPAVIGANGVEKII-ELDLTPEEQK 304 (321)
T ss_pred HhhcCCCccHH-HHHHHHHHHHHHHH--cCCCcEEEEEEEecc-cCCC-CCeEEEEEEEEeCCeEEEEe-CCCCCHHHHH
Confidence 995 566665 57888888888888 689999999999999 7999 79999999999999999999 5999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 013619 401 RIAKTEQELLAEKKC 415 (439)
Q Consensus 401 ~l~~sa~~l~~~~~~ 415 (439)
+|++|++.|++..+.
T Consensus 305 ~l~~sa~~i~~~~~~ 319 (321)
T PTZ00082 305 KFDESIKEVKRLEAL 319 (321)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999987654
No 27
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=6.8e-60 Score=470.96 Aligned_cols=290 Identities=24% Similarity=0.295 Sum_probs=249.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCc---ccccCCC
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP---YELFEDA 173 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~---~eal~dA 173 (439)
|||+||||+|+||+++|+.|+.++++++ |+| +|++ +++|+++||+|+.. ..+++...++ |++++||
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~e---lvL----iDi~--~a~g~alDL~~~~~--~~~i~~~~~~~~~y~~~~da 69 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSE---LAL----YDIV--NTPGVAADLSHINT--PAKVTGYLGPEELKKALKGA 69 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcE---EEE----EecC--ccceeehHhHhCCC--cceEEEecCCCchHHhcCCC
Confidence 6999999779999999999999998764 666 4565 88999999999972 1234432133 8999999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHH----HHHHHHHCCCCCC-Cceeccc
Q 013619 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN----ALICLKNAPSIPA-KNFHALT 248 (439)
Q Consensus 174 DiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~----t~i~~k~s~~~p~-kvig~gt 248 (439)
|+||+|+|.|++||++|+|++..|++|++++++.|+++ +|++|+|++|||+|+| |+++++.+ ++|+ |+||+|+
T Consensus 70 DivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvtNPvDv~~~i~t~~~~~~s-~~p~~rviG~~~ 147 (310)
T cd01337 70 DVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIISNPVNSTVPIAAEVLKKAG-VYDPKRLFGVTT 147 (310)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchhhHHHHHHHHHHHhc-CCCHHHEEeeec
Confidence 99999999999999999999999999999999999999 7999999999999998 88889988 6887 8999976
Q ss_pred cchHHHHHHHHHHHhCCCcccceeeEEEecc-CCcceeccccceecCcchhhhhhhccccHHHHHHHHHHhHHHHHHhc-
Q 013619 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNH-STTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKW- 326 (439)
Q Consensus 249 ~LDs~R~~~~lA~~lgv~~~~V~~~~V~GeH-Gdt~Vp~~S~~~I~G~pi~~~i~~~~~~~~ei~~~v~~~~~~Ii~~k- 326 (439)
|||+|++++||+++|+++++|+. +||||| ||+|||+||++++. .++ .+ ++ .+++.++++++|++|++.|
T Consensus 148 -LDs~R~~~~la~~l~v~~~~V~~-~v~GeHsGds~vp~~S~~~~~----~~~-~~-~~-~~~i~~~v~~~g~~Ii~~k~ 218 (310)
T cd01337 148 -LDVVRANTFVAELLGLDPAKVNV-PVIGGHSGVTILPLLSQCQPP----FTF-DQ-EE-IEALTHRIQFGGDEVVKAKA 218 (310)
T ss_pred -hHHHHHHHHHHHHhCcCHHHEEE-EEEecCCCCceeccccccccc----ccC-CH-HH-HHHHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999995 999999 89999999999753 332 12 11 5789999999999999974
Q ss_pred --CCccHHHHHHHHHHHHHHhhcC-CCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCC-CCCHHHHHHH
Q 013619 327 --GRSSAASTAVSIVDAMKSLVTP-TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDV-IFDDYLRKRI 402 (439)
Q Consensus 327 --G~s~~~s~A~~i~~aI~~il~~-~d~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~-~L~~~E~~~l 402 (439)
|.++| ++|.++++++++|+.. .+++.+++++ +.+| + |. +|+|||+||++|++|+++++ ++ +|+++|+++|
T Consensus 219 gkg~t~~-~~a~a~~~iv~aIl~~~~~~~~~~~~s-~~~~-~-g~-~~v~~s~P~~ig~~Gv~~i~-~l~~L~~~E~~~l 292 (310)
T cd01337 219 GAGSATL-SMAYAGARFANSLLRGLKGEKGVIECA-YVES-D-VT-EAPFFATPVELGKNGVEKNL-GLGKLNDYEKKLL 292 (310)
T ss_pred CCCCcch-hHHHHHHHHHHHHHHhcCCCcceEEEE-EEec-c-CC-CceEEEEEEEEeCCeEEEEe-CCCCCCHHHHHHH
Confidence 66655 5888888889888843 3456788887 7777 4 75 79999999999999999998 58 6999999999
Q ss_pred HHHHHHHHHHHH
Q 013619 403 AKTEQELLAEKK 414 (439)
Q Consensus 403 ~~sa~~l~~~~~ 414 (439)
++|++.|++..+
T Consensus 293 ~~S~~~i~~~~~ 304 (310)
T cd01337 293 EAALPELKKNIE 304 (310)
T ss_pred HHHHHHHHHHHh
Confidence 999999987655
No 28
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=100.00 E-value=1.9e-59 Score=468.44 Aligned_cols=292 Identities=24% Similarity=0.244 Sum_probs=246.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEec-Cc--ccccCCCc
Q 013619 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NP--YELFEDAE 174 (439)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~-~~--~eal~dAD 174 (439)
||+||||+|+||+++|+.|+.+++..+ |+| +|+++ ++|+++||+|+. ...+++.++ ++ |++++|||
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~e---lvL----~Di~~--a~g~a~DL~~~~--~~~~i~~~~~~~~~~~~~~daD 69 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSE---LSL----YDIAG--AAGVAADLSHIP--TAASVKGFSGEEGLENALKGAD 69 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcE---EEE----ecCCC--CcEEEchhhcCC--cCceEEEecCCCchHHHcCCCC
Confidence 799999779999999999999988754 666 45554 679999999976 222344322 33 99999999
Q ss_pred EEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhH----HHHHHHHHCCCCCC-Cceecccc
Q 013619 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT----NALICLKNAPSIPA-KNFHALTR 249 (439)
Q Consensus 175 iVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~----~t~i~~k~s~~~p~-kvig~gt~ 249 (439)
+||+++|.|++||++|++++..|++|++++++.|+++ +|++++|++|||+|+ ||+++++.+ ++|+ |+||+|+
T Consensus 70 ivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvsNPvDv~~~i~t~~~~~~s-g~p~~rViG~g~- 146 (312)
T TIGR01772 70 VVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVITNPVNSTVPIAAEVLKKKG-VYDPNKLFGVTT- 146 (312)
T ss_pred EEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEecCchhhHHHHHHHHHHHhc-CCChHHEEeeec-
Confidence 9999999999999999999999999999999999999 799999999999998 888899998 6887 8999987
Q ss_pred chHHHHHHHHHHHhCCCcccceeeEEEeccCC-cceeccccceecCcchhhhhhhccccHHHHHHHHHHhHHHHHHh---
Q 013619 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNHST-TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK--- 325 (439)
Q Consensus 250 LDs~R~~~~lA~~lgv~~~~V~~~~V~GeHGd-t~Vp~~S~~~I~G~pi~~~i~~~~~~~~ei~~~v~~~~~~Ii~~--- 325 (439)
||++||+++||+++|+++++|+. +||||||+ +|||+||++++. +. +.+++ .+++.++++++|++|++.
T Consensus 147 LDsaR~r~~la~~l~v~~~~v~~-~ViGeHg~~s~vp~~S~~~~~--~~---~~~~~--~~~i~~~v~~~g~~Ii~~k~g 218 (312)
T TIGR01772 147 LDIVRANTFVAELKGKDPMEVNV-PVIGGHSGETIIPLISQCPGK--VL---FTEDQ--LEALIHRIQNAGTEVVKAKAG 218 (312)
T ss_pred chHHHHHHHHHHHhCCCHHHeEE-EEEEecCCCcccccccccccc--CC---CCHHH--HHHHHHHHHHHHHHHHhCccC
Confidence 99999999999999999999996 99999987 999999999842 32 22221 578999999999999996
Q ss_pred cCCccHHHHHHHHHHHHHHhhcC-CCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCC-CCCHHHHHHHH
Q 013619 326 WGRSSAASTAVSIVDAMKSLVTP-TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDV-IFDDYLRKRIA 403 (439)
Q Consensus 326 kG~s~~~s~A~~i~~aI~~il~~-~d~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~-~L~~~E~~~l~ 403 (439)
+|.++| ++|.++++.+.+++.. .|++.++|++ +++| +||. +|+|||+||++|++|+++++ ++ +|+++|+++|+
T Consensus 219 kg~t~~-~ia~a~~~iv~ail~~~~d~~~v~~~s-~~~g-~yg~-~~v~~s~P~~ig~~Gv~~i~-~~~~L~~~E~~~l~ 293 (312)
T TIGR01772 219 AGSATL-SMAFAGARFVLSLVRGLKGEEGVVECA-YVES-DGVT-EATFFATPLLLGKNGVEKRL-GIGKLSSFEEKMLN 293 (312)
T ss_pred CCChhH-HHHHHHHHHHHHHHHhhCCCccEEEEE-EEcc-CCCc-CceEEEEEEEEcCCeeEEEE-ccCCCCHHHHHHHH
Confidence 466655 3555555444444421 4678999955 8999 7997 79999999999999999999 58 99999999999
Q ss_pred HHHHHHHHHHHHH
Q 013619 404 KTEQELLAEKKCV 416 (439)
Q Consensus 404 ~sa~~l~~~~~~v 416 (439)
+|++.|++..+.=
T Consensus 294 ~S~~~i~~~~~~g 306 (312)
T TIGR01772 294 GALPELKKNIKKG 306 (312)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999876643
No 29
>PRK06223 malate dehydrogenase; Reviewed
Probab=100.00 E-value=4.8e-58 Score=458.20 Aligned_cols=301 Identities=22% Similarity=0.364 Sum_probs=268.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEe-cCcccccCCCc
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAE 174 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~dAD 174 (439)
|+||+|||| |+||+++++.++..++. + |.| +|++++++++.++|+.|.........+++ +.++++++|||
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-e---v~L----~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~~~~aD 72 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELG-D---VVL----FDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYEDIAGSD 72 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCe-E---EEE----EECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHHHCCCC
Confidence 579999996 99999999999987764 3 666 46678889999999998753333334554 46789999999
Q ss_pred EEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeccccchHH
Q 013619 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (439)
Q Consensus 175 iVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvig~gt~LDs~ 253 (439)
+||+++|.|+++|++|.+++.+|+++++++++.|+++ +|++++|++|||+|++|+++++++ ++|+ |+||+||.||++
T Consensus 73 iVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~-~~~~~viv~tNP~d~~~~~~~~~s-~~~~~~viG~gt~lds~ 150 (307)
T PRK06223 73 VVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKY-APDAIVIVVTNPVDAMTYVALKES-GFPKNRVIGMAGVLDSA 150 (307)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHHHHh-CCCcccEEEeCCCcHHH
Confidence 9999999999999999999999999999999999998 699999999999999999999998 6876 899999999999
Q ss_pred HHHHHHHHHhCCCcccceeeEEEeccCCcceeccccceecCcchhhhhhhccccHHHHHHHHHHhHHHHHHh--cCCccH
Q 013619 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK--WGRSSA 331 (439)
Q Consensus 254 R~~~~lA~~lgv~~~~V~~~~V~GeHGdt~Vp~~S~~~I~G~pi~~~i~~~~~~~~ei~~~v~~~~~~Ii~~--kG~s~~ 331 (439)
||+++||+++++++++|++ +|+||||++++|+||+++|+|.|+.+++.+ +| .+++.+.+++++++|++. +|++.+
T Consensus 151 r~~~~la~~l~v~~~~v~~-~viGehg~s~~p~~S~~~v~g~~~~~~~~~-~~-~~~l~~~v~~~~~~ii~~~~kg~t~~ 227 (307)
T PRK06223 151 RFRTFIAEELNVSVKDVTA-FVLGGHGDSMVPLVRYSTVGGIPLEDLLSK-EK-LDEIVERTRKGGAEIVGLLKTGSAYY 227 (307)
T ss_pred HHHHHHHHHhCcChhhCcc-cEEcCCCCcceEchhhCEECCEEHHHhCCh-HH-HHHHHHHHHHHHHHHHhhcccCChhH
Confidence 9999999999999999997 899999999999999999999999988543 34 578999999999999985 676655
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCCCCCHHHHHHHHHHHHHHHH
Q 013619 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLA 411 (439)
Q Consensus 332 ~s~A~~i~~aI~~il~~~d~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~~L~~~E~~~l~~sa~~l~~ 411 (439)
+.|..+++.+.+++ .|++.++|+|++++| +||+ +|++||+||+++++|+++++ +++|+++|+++|++|+++|++
T Consensus 228 -~~A~~~~~ii~ail--~~~~~~~~~~v~~~g-~yg~-~~~~~s~P~~i~~~Gv~~i~-~~~l~~~e~~~l~~s~~~l~~ 301 (307)
T PRK06223 228 -APAASIAEMVEAIL--KDKKRVLPCSAYLEG-EYGV-KDVYVGVPVKLGKNGVEKII-ELELDDEEKAAFDKSVEAVKK 301 (307)
T ss_pred -HHHHHHHHHHHHHH--cCCCcEEEEEEEecC-cCCC-CCeEEEeEEEEeCCeEEEEe-CCCCCHHHHHHHHHHHHHHHH
Confidence 47777888888888 588999999999999 6999 89999999999999999999 699999999999999999998
Q ss_pred HHHHH
Q 013619 412 EKKCV 416 (439)
Q Consensus 412 ~~~~v 416 (439)
..+.+
T Consensus 302 ~~~~~ 306 (307)
T PRK06223 302 LIEAL 306 (307)
T ss_pred HHHhc
Confidence 77643
No 30
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=100.00 E-value=6.4e-57 Score=449.18 Aligned_cols=295 Identities=23% Similarity=0.363 Sum_probs=261.4
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEe-cCcccccCCCcEEE
Q 013619 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEWAL 177 (439)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~dADiVI 177 (439)
|+|||| |.||+.+++.++..++. + |.| +|++++++++.++|+.|.........++. +.++++++|||+||
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~-e---V~L----~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~l~dADiVI 71 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELG-D---VVL----LDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDIAGSDVVV 71 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCc-E---EEE----EeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHHhCCCCEEE
Confidence 689996 99999999999988765 3 666 46667888999999998753222333443 35689999999999
Q ss_pred EeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeccccchHHHHH
Q 013619 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAK 256 (439)
Q Consensus 178 itag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvig~gt~LDs~R~~ 256 (439)
+++|.|+++|++|.+++..|.+++++++++|+++ +|++++|++|||+|++|+++++++ ++|+ |+||+||.||++|++
T Consensus 72 it~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~-~p~~~iIv~sNP~di~t~~~~~~s-~~~~~rviGlgt~lds~r~~ 149 (300)
T cd01339 72 ITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKY-APNAIVIVVTNPLDVMTYVAYKAS-GFPRNRVIGMAGVLDSARFR 149 (300)
T ss_pred EecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHHHHh-CCCHHHEEEecchHHHHHHH
Confidence 9999999999999999999999999999999998 699999999999999999999998 6776 999999999999999
Q ss_pred HHHHHHhCCCcccceeeEEEeccCCcceeccccceecCcchhhhhhhccccHHHHHHHHHHhHHHHHHhc--CCccHHHH
Q 013619 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKW--GRSSAAST 334 (439)
Q Consensus 257 ~~lA~~lgv~~~~V~~~~V~GeHGdt~Vp~~S~~~I~G~pi~~~i~~~~~~~~ei~~~v~~~~~~Ii~~k--G~s~~~s~ 334 (439)
++||+++++++++|++ +|+|+||++++|+||+++|+|.|+.+++.+++ .+++.+++++++++|++.| |+++| ++
T Consensus 150 ~~la~~l~v~~~~v~~-~v~G~hg~~~~~~~s~~~v~g~~~~~~~~~~~--~~~~~~~v~~~~~~ii~~k~~g~t~~-~~ 225 (300)
T cd01339 150 YFIAEELGVSVKDVQA-MVLGGHGDTMVPLPRYSTVGGIPLTELITKEE--IDEIVERTRNGGAEIVNLLKTGSAYY-AP 225 (300)
T ss_pred HHHHHHhCCCccceEE-EEEeCCCCcceecceecEECCEEHHHhcChHH--HHHHHHHHHHHHHHHHhhcCCCchhH-HH
Confidence 9999999999999997 89999999999999999999999999876543 5789999999999999966 77766 36
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCCCCCHHHHHHHHHHHHHHHHHH
Q 013619 335 AVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEK 413 (439)
Q Consensus 335 A~~i~~aI~~il~~~d~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~~L~~~E~~~l~~sa~~l~~~~ 413 (439)
|.++++++.+|+ .|++.++|+|++++| +||++ |++||+||++|++|+++++ ++.|+++|+++|++|++.|++..
T Consensus 226 a~~~~~i~~ail--~~~~~i~~~s~~~~g-~yg~~-~~~~s~P~~ig~~G~~~~~-~l~l~~~E~~~l~~s~~~l~~~~ 299 (300)
T cd01339 226 AAAIAEMVEAIL--KDKKRVLPCSAYLEG-EYGIK-DIFVGVPVVLGKNGVEKII-ELDLTDEEKEAFDKSVESVKELI 299 (300)
T ss_pred HHHHHHHHHHHH--cCCCcEEEEEEEecc-ccCCC-CeEEEEEEEEeCCeEEEEe-CCCCCHHHHHHHHHHHHHHHHHh
Confidence 777777777777 589999999999999 89995 9999999999999999999 59999999999999999998754
No 31
>PTZ00325 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-56 Score=449.66 Aligned_cols=300 Identities=24% Similarity=0.257 Sum_probs=258.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEec--Cc-ccc
Q 013619 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NP-YEL 169 (439)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~--~~-~ea 169 (439)
..||.||+||||+|+||+++++.|+..+++.+ |.| +|+ ++++++++||+|+.. ...+...+ ++ |++
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~e---lvL----~Di--~~~~g~a~Dl~~~~~--~~~v~~~td~~~~~~~ 73 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSE---LSL----YDI--VGAPGVAADLSHIDT--PAKVTGYADGELWEKA 73 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCE---EEE----Eec--CCCcccccchhhcCc--CceEEEecCCCchHHH
Confidence 35788999999779999999999998877654 666 344 568899999999863 22333222 23 899
Q ss_pred cCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHH----HHCCCCCC-Cce
Q 013619 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICL----KNAPSIPA-KNF 244 (439)
Q Consensus 170 l~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~----k~s~~~p~-kvi 244 (439)
++|||+||+++|.|++|+++|.+++..|++++++++++|+++ +|+++|+++|||+|.|+++++ +.+ ++|+ |+|
T Consensus 74 l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvdv~~~~~~~~~~~~s-g~p~~~vi 151 (321)
T PTZ00325 74 LRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVNSTVPIAAETLKKAG-VYDPRKLF 151 (321)
T ss_pred hCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHHhhhhhcc-CCChhhee
Confidence 999999999999999999999999999999999999999998 799999999999999999995 776 6777 899
Q ss_pred eccccchHHHHHHHHHHHhCCCcccceeeEEEeccCC-cceeccccceecCcchhhhhhhccccHHHHHHHHHHhHHHHH
Q 013619 245 HALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHST-TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLI 323 (439)
Q Consensus 245 g~gt~LDs~R~~~~lA~~lgv~~~~V~~~~V~GeHGd-t~Vp~~S~~~I~G~pi~~~i~~~~~~~~ei~~~v~~~~~~Ii 323 (439)
|+|+ |||+||+++||+++|++|++|++ |||||||| +|||+||++ |.|+.+ ++ .+++.++++++|++|+
T Consensus 152 G~g~-LDs~R~r~~la~~l~v~~~~V~~-~VlGeHGd~s~v~~~S~~---g~~l~~----~~--~~~i~~~v~~~g~~Ii 220 (321)
T PTZ00325 152 GVTT-LDVVRARKFVAEALGMNPYDVNV-PVVGGHSGVTIVPLLSQT---GLSLPE----EQ--VEQITHRVQVGGDEVV 220 (321)
T ss_pred echh-HHHHHHHHHHHHHhCcChhheEE-EEEeecCCcccccchhcc---CCCCCH----HH--HHHHHHHHHHHHHHHH
Confidence 9986 99999999999999999999996 99999999 899999999 778642 12 5789999999999999
Q ss_pred Hhc---CCccHHHHHHHHHHHHHHhhcC-CCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCCCCCHHHH
Q 013619 324 KKW---GRSSAASTAVSIVDAMKSLVTP-TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLR 399 (439)
Q Consensus 324 ~~k---G~s~~~s~A~~i~~aI~~il~~-~d~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~~L~~~E~ 399 (439)
+.| |.+.| ++|.++++.+++|+.. +|++.++|++ +++| +||+ +|+|+|+||++|++|++++++.++|+++|+
T Consensus 221 ~~k~~kg~t~~-g~a~a~~~i~~ail~~~~~~~~v~~~~-~~~g-~yg~-~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~ 296 (321)
T PTZ00325 221 KAKEGAGSATL-SMAYAAAEWSTSVLKALRGDKGIVECA-FVES-DMRP-ECPFFSSPVELGKEGVERVLPIGPLNAYEE 296 (321)
T ss_pred hcccCCCCchH-HHHHHHHHHHHHHHhhcCCCCCeEEEE-EEec-CCCC-CCeEEEEEEEEcCCeeEEEcCCCCCCHHHH
Confidence 976 55655 5888888888888843 4588899995 8999 7997 799999999999999999994389999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 013619 400 KRIAKTEQELLAEKKCVAHLT 420 (439)
Q Consensus 400 ~~l~~sa~~l~~~~~~v~~~~ 420 (439)
++|++|++.|++..+.=..|+
T Consensus 297 ~~l~~S~~~i~~~~~~~~~~~ 317 (321)
T PTZ00325 297 ELLEAAVPDLKKNIEKGLEFA 317 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998887666655
No 32
>PRK05086 malate dehydrogenase; Provisional
Probab=100.00 E-value=9.5e-55 Score=435.60 Aligned_cols=295 Identities=23% Similarity=0.285 Sum_probs=250.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHh-cCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEE--ecCcccccCCC
Q 013619 97 VNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI--GINPYELFEDA 173 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~-~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i--~~~~~eal~dA 173 (439)
|||+||||+|+||+++++.|.. .+... ++.| +|++ +..+++++||+|.. ....++. ..+.+++++|+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~---el~L----~d~~-~~~~g~alDl~~~~--~~~~i~~~~~~d~~~~l~~~ 70 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGS---ELSL----YDIA-PVTPGVAVDLSHIP--TAVKIKGFSGEDPTPALEGA 70 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCcc---EEEE----EecC-CCCcceehhhhcCC--CCceEEEeCCCCHHHHcCCC
Confidence 7999999889999999999865 34433 3555 3555 34678899998752 2122332 22338999999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHH----HHCCCCCC-Cceeccc
Q 013619 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICL----KNAPSIPA-KNFHALT 248 (439)
Q Consensus 174 DiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~----k~s~~~p~-kvig~gt 248 (439)
|+||+++|.+++++++|.+++..|+++++++++.|+++ +|+++|+++|||+|+||++++ +++ ++|+ |+||+|+
T Consensus 71 DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~D~~t~~~~~~~~~~s-g~p~~rvig~~~ 148 (312)
T PRK05086 71 DVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPVNTTVAIAAEVLKKAG-VYDKNKLFGVTT 148 (312)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchHHHHHHHHHHHHHhc-CCCHHHEEeeec
Confidence 99999999999999999999999999999999999999 799999999999999999987 887 7887 8999987
Q ss_pred cchHHHHHHHHHHHhCCCcccceeeEEEeccCC-cceeccccceecCcchhhhhhhccccHHHHHHHHHHhHHHHHHhc-
Q 013619 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNHST-TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKW- 326 (439)
Q Consensus 249 ~LDs~R~~~~lA~~lgv~~~~V~~~~V~GeHGd-t~Vp~~S~~~I~G~pi~~~i~~~~~~~~ei~~~v~~~~~~Ii~~k- 326 (439)
||++|++++||+++|+++++|+. +||||||+ +|||+||++ +|.|+.+ ++ .+++.++++++|++|++.|
T Consensus 149 -Lds~R~~~~ia~~l~~~~~~v~~-~v~GeHg~~s~~p~~S~~--~g~~l~~----~~--~~~i~~~v~~~g~~ii~~k~ 218 (312)
T PRK05086 149 -LDVIRSETFVAELKGKQPGEVEV-PVIGGHSGVTILPLLSQV--PGVSFTE----QE--VADLTKRIQNAGTEVVEAKA 218 (312)
T ss_pred -HHHHHHHHHHHHHhCCChhheEE-EEEEecCCCceecccccc--CCccCCH----HH--HHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999996 99999976 999999999 8988743 22 5789999999999999977
Q ss_pred --CCccHHHHHHHHHHHHHHhhcC-CCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCC-CCCHHHHHHH
Q 013619 327 --GRSSAASTAVSIVDAMKSLVTP-TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDV-IFDDYLRKRI 402 (439)
Q Consensus 327 --G~s~~~s~A~~i~~aI~~il~~-~d~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~-~L~~~E~~~l 402 (439)
|.+.| ++|.++++.+++|+.+ .|+++++|++ +++| + |. +|+|||+||++|++|++++++ + +|+++|+++|
T Consensus 219 ~~g~t~~-~~a~a~~~~v~ai~~~~~~~~~v~~~~-~~~~-~-g~-~~v~~s~P~~ig~~Gv~~i~~-~~~L~~~E~~~l 292 (312)
T PRK05086 219 GGGSATL-SMGQAAARFGLSLVRALQGEQGVVECA-YVEG-D-GK-YARFFAQPVLLGKNGVEERLP-IGTLSAFEQNAL 292 (312)
T ss_pred CCCCchh-hHHHHHHHHHHHHHhcCCCCCcEEEEE-EEec-c-CC-cceEEEEEEEEcCCeeEEEcC-CCCCCHHHHHHH
Confidence 66655 5888999999998865 5688899976 8888 4 76 789999999999999999995 6 9999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 013619 403 AKTEQELLAEKKCVAHL 419 (439)
Q Consensus 403 ~~sa~~l~~~~~~v~~~ 419 (439)
++|++.|++..+.=..|
T Consensus 293 ~~s~~~i~~~~~~g~~~ 309 (312)
T PRK05086 293 EGMLDTLKKDIALGEEF 309 (312)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999887654444
No 33
>PLN00106 malate dehydrogenase
Probab=100.00 E-value=1.9e-54 Score=434.05 Aligned_cols=292 Identities=24% Similarity=0.288 Sum_probs=248.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCc---ccccC
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP---YELFE 171 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~---~eal~ 171 (439)
.+.||+||||+|+||+++++.|+.++++++ |.| +|+++ ++|+++||+|+.... .+.-.+++ |++++
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~e---l~L----~Di~~--~~g~a~Dl~~~~~~~--~i~~~~~~~d~~~~l~ 85 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSE---LHL----YDIAN--TPGVAADVSHINTPA--QVRGFLGDDQLGDALK 85 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCE---EEE----EecCC--CCeeEchhhhCCcCc--eEEEEeCCCCHHHHcC
Confidence 457999999779999999999999998864 666 45554 789999999997421 33321234 89999
Q ss_pred CCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchh----HHHHHHHHHCCCCCC-Cceec
Q 013619 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN----TNALICLKNAPSIPA-KNFHA 246 (439)
Q Consensus 172 dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd----~~t~i~~k~s~~~p~-kvig~ 246 (439)
|||+||+++|.|++||++|.+++..|++|+++++++++++ +|+++|+++|||+| ++++++++.+ ++|+ |+||+
T Consensus 86 ~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~-~p~aivivvSNPvD~~~~i~t~~~~~~s-~~p~~~viG~ 163 (323)
T PLN00106 86 GADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKH-CPNALVNIISNPVNSTVPIAAEVLKKAG-VYDPKKLFGV 163 (323)
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCCccccHHHHHHHHHHcC-CCCcceEEEE
Confidence 9999999999999999999999999999999999999999 69999999999999 8999999988 6776 89999
Q ss_pred cccchHHHHHHHHHHHhCCCcccceeeEEEeccC-CcceeccccceecCcchhhhhhhccccHHHHHHHHHHhHHHHHHh
Q 013619 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHS-TTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK 325 (439)
Q Consensus 247 gt~LDs~R~~~~lA~~lgv~~~~V~~~~V~GeHG-dt~Vp~~S~~~I~G~pi~~~i~~~~~~~~ei~~~v~~~~~~Ii~~ 325 (439)
|+ ||++||++++|+++|+++.+|++ +|+|||| ++|||+||++++. .+ +.++ ..+++.++++++|++|++.
T Consensus 164 ~~-LDs~Rl~~~lA~~lgv~~~~V~~-~ViGeHg~~s~vp~~S~~~~~----~~-~~~~--~~~~i~~~v~~~g~~Ii~~ 234 (323)
T PLN00106 164 TT-LDVVRANTFVAEKKGLDPADVDV-PVVGGHAGITILPLLSQATPK----VS-FTDE--EIEALTKRIQNGGTEVVEA 234 (323)
T ss_pred ec-chHHHHHHHHHHHhCCChhheEE-EEEEeCCCccEeeehhcceec----cc-CCHH--HHHHHHHHHHHHHHHHHhC
Confidence 86 99999999999999999999997 8999996 5999999999643 22 2121 2578999999999999996
Q ss_pred ---cCCccHHHHHHHHHHHHHHhhcC-CCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCC-CCCHHHHH
Q 013619 326 ---WGRSSAASTAVSIVDAMKSLVTP-TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDV-IFDDYLRK 400 (439)
Q Consensus 326 ---kG~s~~~s~A~~i~~aI~~il~~-~d~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~-~L~~~E~~ 400 (439)
+|.+.| ++|.++++++++|+.+ .|++.++|+| +.+| +| .+++|||+||++|++|++++++ + +|+++|++
T Consensus 235 k~~kg~t~~-~~a~a~~~ii~ail~~~~~~~~v~~~s-~~~~-~~--~~~v~~s~P~~ig~~Gv~~i~~-~~~L~~~E~~ 308 (323)
T PLN00106 235 KAGAGSATL-SMAYAAARFADACLRGLNGEADVVECS-YVQS-EV--TELPFFASKVRLGRNGVEEVLG-LGPLSEYEQK 308 (323)
T ss_pred ccCCCCchH-HHHHHHHHHHHHHHhccCCCceEEEEE-EECc-cc--CCceEEEEEEEEcCCeeEEEcC-CCCCCHHHHH
Confidence 466655 5888888989988853 2477999999 6777 45 2349999999999999999994 6 99999999
Q ss_pred HHHHHHHHHHHHHH
Q 013619 401 RIAKTEQELLAEKK 414 (439)
Q Consensus 401 ~l~~sa~~l~~~~~ 414 (439)
+|++|++.|++..+
T Consensus 309 ~l~~S~~~i~~~~~ 322 (323)
T PLN00106 309 GLEALKPELKASIE 322 (323)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998754
No 34
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=100.00 E-value=4.4e-52 Score=407.03 Aligned_cols=258 Identities=36% Similarity=0.516 Sum_probs=229.0
Q ss_pred EEEEcCCCchHHHHHHHHHhcC--CCCCCCceEEEecccccchhhHHHHHHHHhcccCCC-CccEEEecCcccccCCCcE
Q 013619 99 IAVSGAAGMIANHLLFKLAAGE--VLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFEDAEW 175 (439)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~--l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~-~~~v~i~~~~~eal~dADi 175 (439)
|+||||+|++|.++++.|+..+ ... +|.| +|++++++++.++||+|..... ..+++.+++.|++++|||+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~---el~L----~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDi 73 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAI---ELVL----YDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADV 73 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcce---EEEE----EeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCE
Confidence 6899977999999999999888 432 3655 4667799999999999997544 3456666666999999999
Q ss_pred EEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeccccchHHH
Q 013619 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENR 254 (439)
Q Consensus 176 VIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvig~gt~LDs~R 254 (439)
||+++|.|+++|++|.+++.+|++++++++++|+++ +|++|+|++|||+|.+|+++++++ ++|+ |+||+|| ||++|
T Consensus 74 Vv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~~i~~tNP~d~~t~~~~~~s-g~~~~kviG~~~-ld~~r 150 (263)
T cd00650 74 VIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKY-SPDAWIIVVSNPVDIITYLVWRYS-GLPKEKVIGLGT-LDPIR 150 (263)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHHHHh-CCCchhEEEeec-chHHH
Confidence 999999999999999999999999999999999999 699999999999999999999998 6876 9999999 99999
Q ss_pred HHHHHHHHhCCCcccceeeEEEeccCCcceeccccceecCcchhhhhhhccccHHHHHHHHHHhHHHHHHhcCCccHHHH
Q 013619 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAST 334 (439)
Q Consensus 255 ~~~~lA~~lgv~~~~V~~~~V~GeHGdt~Vp~~S~~~I~G~pi~~~i~~~~~~~~ei~~~v~~~~~~Ii~~kG~s~~~s~ 334 (439)
++++||+++++++++|+. +|||+||++++|+||+++ +
T Consensus 151 ~~~~la~~l~v~~~~v~~-~v~G~hg~~~~~~~s~~~------------------------------------------~ 187 (263)
T cd00650 151 FRRILAEKLGVDPDDVKV-YILGEHGGSQVPDWSTVR------------------------------------------I 187 (263)
T ss_pred HHHHHHHHhCCCccceEE-EEEEcCCCceEeccccch------------------------------------------H
Confidence 999999999999999995 999999999999999875 2
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCCCCCHHHHHHHHHHHHHHHHHH
Q 013619 335 AVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEK 413 (439)
Q Consensus 335 A~~i~~aI~~il~~~d~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~~L~~~E~~~l~~sa~~l~~~~ 413 (439)
|.++++.+++|+ +|++.++|++++++| +||+|+|++||+||+++++|++++++ ++|+++|+++|+++++.++...
T Consensus 188 a~~~~~ii~ai~--~~~~~~~~v~v~~~g-~ygi~~~~~~s~P~~i~~~Gi~~~~~-~~l~~~e~~~l~~s~~~~~~~~ 262 (263)
T cd00650 188 ATSIADLIRSLL--NDEGEILPVGVRNNG-QIGIPDDVVVSVPCIVGKNGVEEPIE-VGLTDFELEKLQKSADTLKKEL 262 (263)
T ss_pred HHHHHHHHHHHH--cCCCEEEEEEEEeCC-ccCCcCCEEEEEEEEEeCCceEEEec-CCCCHHHHHHHHHHHHHHHHHh
Confidence 334444455555 689999999999999 89998999999999999999999995 8999999999999999988764
No 35
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=1.9e-40 Score=317.09 Aligned_cols=303 Identities=25% Similarity=0.272 Sum_probs=239.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEe---cCccccc
Q 013619 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG---INPYELF 170 (439)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~---~~~~eal 170 (439)
.+..||+|.||+|.||+.|...|...++.++ +.| + |+. ...|++.||.|.... ..+.-. .+.++++
T Consensus 26 ~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~---LaL--Y--Di~--~~~GVaaDlSHI~T~--s~V~g~~g~~~L~~al 94 (345)
T KOG1494|consen 26 QRGLKVAVLGAAGGIGQPLSLLLKLNPLVSE---LAL--Y--DIA--NTPGVAADLSHINTN--SSVVGFTGADGLENAL 94 (345)
T ss_pred cCcceEEEEecCCccCccHHHHHhcCcccce---eee--e--ecc--cCCcccccccccCCC--CceeccCChhHHHHHh
Confidence 4567999999999999999999999888764 555 3 332 568999999998632 233322 2467899
Q ss_pred CCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHH---HHHCCCCCCCceecc
Q 013619 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALIC---LKNAPSIPAKNFHAL 247 (439)
Q Consensus 171 ~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~---~k~s~~~p~kvig~g 247 (439)
++||+|||-||.||||||+|.||+..|+-|+++++..+.++ ||++.+.++|||+|....++ +|+.+-++++.+...
T Consensus 95 ~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~-cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGV 173 (345)
T KOG1494|consen 95 KGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKC-CPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGV 173 (345)
T ss_pred cCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhh-CccceeEeecCcccccchHHHHHHHHcCCCCccceece
Confidence 99999999999999999999999999999999999999998 89999999999999776653 567778887655566
Q ss_pred ccchHHHHHHHHHHHhCCCc-ccceeeEEEecc-CCcceeccccceecCcchhhhhhhccccHHHHHHHHHHhHHHHHHh
Q 013619 248 TRLDENRAKCQLALKAGVFY-DKVSNMTIWGNH-STTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK 325 (439)
Q Consensus 248 t~LDs~R~~~~lA~~lgv~~-~~V~~~~V~GeH-Gdt~Vp~~S~~~I~G~pi~~~i~~~~~~~~ei~~~v~~~~~~Ii~~ 325 (439)
|.||..|++.++++.++++| ++++ ++|+|.| |.|.+|++|+.+ |...+-.+ ..++++.+++..|-|+++.
T Consensus 174 TtLDvVRA~tFv~~~~~~~p~~~v~-VPVIGGHaG~TIlPLlSQ~~----p~~~~~~~---~~~~Lt~RiQ~gGtEVV~A 245 (345)
T KOG1494|consen 174 TTLDVVRANTFVAEVLNLDPAEDVD-VPVIGGHAGITIIPLLSQCK----PPFRFTDD---EIEALTHRIQNGGTEVVKA 245 (345)
T ss_pred ehhhhhhHHHHHHHHhCCCchhcCC-cceecCcCCceEeeecccCC----CcccCCHH---HHHHHHHHHHhCCceEEEe
Confidence 88999999999999999999 5577 7999999 579999999997 54433222 2578999999999998875
Q ss_pred c-CCccH-HHHHHHHHHHHHHhhcC-C-CCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCCCCCHHHHHH
Q 013619 326 W-GRSSA-ASTAVSIVDAMKSLVTP-T-PEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKR 401 (439)
Q Consensus 326 k-G~s~~-~s~A~~i~~aI~~il~~-~-d~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~~L~~~E~~~ 401 (439)
| |..++ .|.|++-++...+++.+ . +++.+-+.-|++. .+++| ||+.|+++|++|++++....+|+++|++.
T Consensus 246 KaGaGSATLSMAyAga~fa~s~lrgl~G~~~v~ecafV~s~--~~~~~---fFaspv~Lg~~Gv~~v~~l~~lsd~E~~~ 320 (345)
T KOG1494|consen 246 KAGAGSATLSMAYAGAKFADSLLRGLNGDEDVVECAFVASP--VTELP---FFATPVTLGKKGVEEVLGLGKLSDYEEKA 320 (345)
T ss_pred ccCCCchhhhHHHHHHHHHHHHHHHhCCCCCeEEEeEEecc--ccCcc---ceeceEEecCCceeeecCCCccCHHHHHH
Confidence 4 44444 45555544444444333 2 3444444445555 36775 99999999999999999778999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 013619 402 IAKTEQELLAEKKCVAHLTG 421 (439)
Q Consensus 402 l~~sa~~l~~~~~~v~~~~~ 421 (439)
|+.+..+|++.++.=..|..
T Consensus 321 l~~~~~eLk~sI~KGv~F~~ 340 (345)
T KOG1494|consen 321 LEAAKPELKKSIEKGVTFVK 340 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHh
Confidence 99999999998877666553
No 36
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=100.00 E-value=3.6e-36 Score=277.45 Aligned_cols=168 Identities=28% Similarity=0.414 Sum_probs=152.5
Q ss_pred ccchHHHHHHHHHHHhCCCcccceeeEEEeccCCcceeccccceecCcchhhhhhh----ccccHHHHHHHHHHhHHHHH
Q 013619 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD----HKWLEEGFTETIQKRGGLLI 323 (439)
Q Consensus 248 t~LDs~R~~~~lA~~lgv~~~~V~~~~V~GeHGdt~Vp~~S~~~I~G~pi~~~i~~----~~~~~~ei~~~v~~~~~~Ii 323 (439)
|.||++||+++||+++|++|++|+. +||||||++|||+||+++|+|.|+.++.+. .+|..+++.++++++|++|+
T Consensus 1 T~LDs~R~~~~la~~l~v~~~~v~~-~ViGeHg~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii 79 (174)
T PF02866_consen 1 TMLDSARFRYFLAEKLGVNPSSVNA-YVIGEHGDSQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII 79 (174)
T ss_dssp THHHHHHHHHHHHHHHTSGGGGEEE-EEEBSSSTTEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCccceEE-EEEecCCcceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence 7899999999999999999999995 999999999999999999999999876543 24567899999999999999
Q ss_pred HhcCCccHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCc-eEEEEEEEEcCCCceEeecCCCCCHHHHHHH
Q 013619 324 KKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAED-IVFSMPCRSKGDGDYELVKDVIFDDYLRKRI 402 (439)
Q Consensus 324 ~~kG~s~~~s~A~~i~~aI~~il~~~d~~~v~~~sv~~~G~~yGip~d-v~~svPv~ig~~Gv~~iv~~~~L~~~E~~~l 402 (439)
+.||++.+.++|.++++.+.+|+ .|++.++|+|++++| +||++++ +|||+||++|++|++++++.++|+++|+++|
T Consensus 80 ~~k~g~t~~s~A~a~~~~v~ail--~~~~~i~~~sv~~~g-~yg~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l 156 (174)
T PF02866_consen 80 KAKGGSTSYSIAAAAARIVEAIL--KDERRILPVSVYLDG-EYGIPDGCVYFSVPVVIGKNGVEKIVEDLPLSEEEQEKL 156 (174)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHH--TTHTEEEEEEEEEES-GGGEESSSEEEEEEEEEETTEEEEEECSBSSTHHHHHHH
T ss_pred eeccccCcCCHHHHHHHHHHHHh--hcccccccceecccc-ccCcccccceecceEEEcCCeeEEEeCCCCCCHHHHHHH
Confidence 99944444568999999999999 578999999999999 7999765 9999999999999999995599999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 013619 403 AKTEQELLAEKKCVAHL 419 (439)
Q Consensus 403 ~~sa~~l~~~~~~v~~~ 419 (439)
++|+++|++.++.+.+|
T Consensus 157 ~~sa~~l~~~i~~~~~f 173 (174)
T PF02866_consen 157 KESAKELKKEIEKGLEF 173 (174)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999999887
No 37
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=100.00 E-value=3.5e-31 Score=275.05 Aligned_cols=284 Identities=17% Similarity=0.165 Sum_probs=204.9
Q ss_pred CEEEEEcCCCchHHH--HHHHHHhcC-CCCCCCceEEEecccccchhhHH---HHHHHHhcccCCCCccEEEecCccccc
Q 013619 97 VNIAVSGAAGMIANH--LLFKLAAGE-VLGPDQPIALKLLGSERSLQALE---GVAMELEDSLFPLLREVKIGINPYELF 170 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~--la~~L~~~~-l~~~~~~I~L~l~~~d~~~e~l~---g~a~DL~~~~~~~~~~v~i~~~~~eal 170 (439)
|||+|||| |+. ++ +...|+... -+. ..+|.|+ |+++++++ .++..+.+.. ...-++..++|..+|+
T Consensus 1 ~KI~iIGg-GS~-~tp~li~~l~~~~~~l~-~~ei~L~----Did~~Rl~~v~~l~~~~~~~~-g~~~~v~~ttD~~~Al 72 (425)
T cd05197 1 VKIAIIGG-GSS-FTPELVSGLLKTPEELP-ISEVTLY----DIDEERLDIILTIAKRYVEEV-GADIKFEKTMDLEDAI 72 (425)
T ss_pred CEEEEECC-chH-hHHHHHHHHHcChhhCC-CCEEEEE----cCCHHHHHHHHHHHHHHHHhh-CCCeEEEEeCCHHHHh
Confidence 69999997 543 33 444444443 122 1457664 34445554 3444444332 2224678899999999
Q ss_pred CCCcEEEEe---CCc---------CCCCCC--------chhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHH
Q 013619 171 EDAEWALLI---GAK---------PRGPGM--------ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (439)
Q Consensus 171 ~dADiVIit---ag~---------~~kpg~--------~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~ 230 (439)
+|||+||.+ +|. |.|+|. -......+|++++.++++.|+++ ||+||+|++|||+|++|+
T Consensus 73 ~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~-~P~a~lin~TNP~di~t~ 151 (425)
T cd05197 73 IDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKL-SPDAWYLNFTNPAGEVTE 151 (425)
T ss_pred CCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHh-CCCcEEEecCChHHHHHH
Confidence 999999996 342 335543 24667789999999999999999 799999999999999999
Q ss_pred HHHHHCCCCCCCceeccccchHHHHHHHHHHHhCCCcccceeeEEEe-ccCCcceeccccceecCcchhhhhh----h--
Q 013619 231 ICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIK----D-- 303 (439)
Q Consensus 231 i~~k~s~~~p~kvig~gt~LDs~R~~~~lA~~lgv~~~~V~~~~V~G-eHGdt~Vp~~S~~~I~G~pi~~~i~----~-- 303 (439)
++++.++ ..|+||+|+. +.|++++||+.+|+++++|+. +++| ||| ++||+++++|+|+...+. +
T Consensus 152 a~~~~~p--~~rviG~c~~--~~r~~~~ia~~lgv~~~~v~~-~v~GlnHg----~~~s~~~~~G~~l~p~l~~~~~~~~ 222 (425)
T cd05197 152 AVRRYVP--PEKAVGLCNV--PIGVMEIVAKLLGESEEKVDW-QYAGLNHG----IWLNRVRYNGGDVTPKLDEWVEEKS 222 (425)
T ss_pred HHHHhCC--CCcEEEECCC--HHHHHHHHHHHhCCCHHHeEE-EEEeccCe----EeeEeEEECCeecHHHHHHHHhccC
Confidence 9998852 2399999999 999999999999999999996 8999 998 999999999988764322 1
Q ss_pred ------c-------ccc------------------------HHH-HHH---------HH---HHhHHHH-----------
Q 013619 304 ------H-------KWL------------------------EEG-FTE---------TI---QKRGGLL----------- 322 (439)
Q Consensus 304 ------~-------~~~------------------------~~e-i~~---------~v---~~~~~~I----------- 322 (439)
. .|. .++ +.+ .+ .++-++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~ 302 (425)
T cd05197 223 KDWKTENPFVDQLSPAAIDFYRFYGVLPNPYLRYYLSWDKXRKLEADKEITWKTRADEVGKVEKELFEVYKFIKENPSVV 302 (425)
T ss_pred ccccccccccccccchHHHHHHhCCCcccCCccccCccchhhhhhHHhhcccCccHHHHHHHHHHHHHHHhhhhhcCChh
Confidence 0 010 000 000 00 0000011
Q ss_pred -HHhcCCccHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCCCCCHHHHHH
Q 013619 323 -IKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKR 401 (439)
Q Consensus 323 -i~~kG~s~~~s~A~~i~~aI~~il~~~d~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~~L~~~E~~~ 401 (439)
...+|...++..|..|+++|. +|++.++.++|.++|..-++|+|.++++||+++++|+.++- --+|.+..+..
T Consensus 303 ~~~~r~~~~~~e~a~~ii~ai~-----~~~~~~~~vNv~N~G~I~nLp~d~vVEvp~~v~~~Gi~P~~-vg~lp~~~~~L 376 (425)
T cd05197 303 ELIKRGGRKYSEAAIPLIRALL-----NDNGARFVVNTRNNGAIANIDDDVVVEVPCLVDKNGPHPIK-VGPLDRFVKGL 376 (425)
T ss_pred hhhhcCCcccHHHHHHHHHHHH-----cCCCeEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceecc-cCCCCHHHHHH
Confidence 112344556778888888887 78999999999999988899999999999999999999875 46787765554
Q ss_pred HHH
Q 013619 402 IAK 404 (439)
Q Consensus 402 l~~ 404 (439)
++.
T Consensus 377 i~~ 379 (425)
T cd05197 377 LRQ 379 (425)
T ss_pred HHH
Confidence 443
No 38
>PRK15076 alpha-galactosidase; Provisional
Probab=100.00 E-value=9.1e-31 Score=272.68 Aligned_cols=283 Identities=16% Similarity=0.141 Sum_probs=207.9
Q ss_pred CCEEEEEcCCCchHHHHHH--HHH-hcCCCCCCCceEEEecccccchhhHH-HHHHHHhcccCCC--CccEEEecCcccc
Q 013619 96 MVNIAVSGAAGMIANHLLF--KLA-AGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPL--LREVKIGINPYEL 169 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~--~L~-~~~l~~~~~~I~L~l~~~d~~~e~l~-g~a~DL~~~~~~~--~~~v~i~~~~~ea 169 (439)
|+||+|||| |++|++.++ .++ ...+.+ .+|+| .|+++++++ +.++ +++..... ..+++.+++.+++
T Consensus 1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~--~evvL----vDid~er~~~~~~l-~~~~~~~~~~~~~i~~ttD~~ea 72 (431)
T PRK15076 1 MPKITFIGA-GSTVFTKNLLGDILSVPALRD--AEIAL----MDIDPERLEESEIV-ARKLAESLGASAKITATTDRREA 72 (431)
T ss_pred CcEEEEECC-CHHHhHHHHHHHHhhCccCCC--CEEEE----ECCCHHHHHHHHHH-HHHHHHhcCCCeEEEEECCHHHH
Confidence 479999996 999999877 666 334433 24666 356667777 4444 55443112 2356666777899
Q ss_pred cCCCcEEEEeCCcC-CCCC--------------Cchhhh--------HHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 013619 170 FEDAEWALLIGAKP-RGPG--------------MERAGL--------LDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (439)
Q Consensus 170 l~dADiVIitag~~-~kpg--------------~~r~~l--------l~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd 226 (439)
++|||+||++++.+ ++++ ++|.+. +.+|++++++++++|+++ +|+||+|++|||+|
T Consensus 73 l~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~-~p~a~iin~tNP~d 151 (431)
T PRK15076 73 LQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEV-CPDALLLNYVNPMA 151 (431)
T ss_pred hCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHH-CCCeEEEEcCChHH
Confidence 99999999998876 4445 467777 999999999999999999 79999999999999
Q ss_pred HHHHHHHHHCCCCCC-Cceecc-ccchHHHHHHHHHHHhCCCcccceeeEEEe-ccCCcceeccccceecCcchhhhhhh
Q 013619 227 TNALICLKNAPSIPA-KNFHAL-TRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD 303 (439)
Q Consensus 227 ~~t~i~~k~s~~~p~-kvig~g-t~LDs~R~~~~lA~~lgv~~~~V~~~~V~G-eHGdt~Vp~~S~~~I~G~pi~~~i~~ 303 (439)
++|+++++ +|+ |+||+| +.+|+. +.+|+.+|+++++|+. ++.| || +.|+.+.+.+|+++...+.+
T Consensus 152 ivt~~~~~----~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~-~~~GlNH----~~W~~~~~~~G~D~~p~l~~ 219 (431)
T PRK15076 152 MNTWAMNR----YPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRY-RCAGINH----MAWYLELERKGEDLYPELRA 219 (431)
T ss_pred HHHHHHhc----CCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEE-EEEeecc----hhhheeeeECCcchHHHHHH
Confidence 99999973 343 999999 999986 8899999999999996 8899 99 57888888888665422111
Q ss_pred ---------------------------------c--ccc----HHHHHHHHH-------HhHH-------HHH-HhcCC-
Q 013619 304 ---------------------------------H--KWL----EEGFTETIQ-------KRGG-------LLI-KKWGR- 328 (439)
Q Consensus 304 ---------------------------------~--~~~----~~ei~~~v~-------~~~~-------~Ii-~~kG~- 328 (439)
+ .|. .++..+... ++.. +.. +..+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~y~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (431)
T PRK15076 220 AAAEGQTRCQDKVRYEMLKRFGYFVTESSEHFAEYVPWFIKPGRPDLIERFNIPLDEYPRRCEEQIANWEKEREELANAE 299 (431)
T ss_pred HHhccCchhcccccHHHHHHhCCCcccchhhhhhhhcccCcCCCHHHHHHhhcccchhhhhHHHHhhhHHHHHHHhhCCC
Confidence 0 011 122211111 0111 111 22333
Q ss_pred ----ccHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCCCCCHHHHHHHHH
Q 013619 329 ----SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (439)
Q Consensus 329 ----s~~~s~A~~i~~aI~~il~~~d~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (439)
..++..|..|+++|. +|++.++.++|.++|..-++|+|.++++||+++++|+.++- --+|.+..+..++.
T Consensus 300 ~~~~~~~~e~a~~ii~ai~-----~~~~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~-~g~lP~~~~~l~~~ 373 (431)
T PRK15076 300 RIEIKRSREYASTIIEAIE-----TGEPSVIYGNVRNNGLIDNLPQGCCVEVPCLVDRNGIQPTK-VGDLPPQLAALNRT 373 (431)
T ss_pred ccccccchHHHHHHHHHHh-----cCCceEEEEECCCCCcCCCCCCCCEEEEeEEEcCCcceeee-cCCCCHHHHHHHHH
Confidence 224667788888877 78999999999999987899999999999999999999976 46888877666544
Q ss_pred H
Q 013619 405 T 405 (439)
Q Consensus 405 s 405 (439)
-
T Consensus 374 ~ 374 (431)
T PRK15076 374 N 374 (431)
T ss_pred H
Confidence 3
No 39
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=100.00 E-value=2e-32 Score=244.47 Aligned_cols=140 Identities=31% Similarity=0.471 Sum_probs=128.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (439)
|||+||||+|+||+++++.|+++++.+| |.| +|+++++++|+++||+|+.++...++.++.++|++++|||+|
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~e---i~L----~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDiv 73 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADE---IVL----IDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIV 73 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSE---EEE----EESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCc---eEE----eccCcccceeeehhhhhhhhhcccccccccccccccccccEE
Confidence 7999999779999999999999998864 766 577888999999999999865556788888999999999999
Q ss_pred EEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Ccee
Q 013619 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFH 245 (439)
Q Consensus 177 Iitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvig 245 (439)
|+++|.|++||++|.+++..|+++++++++.|+++ +|+++++++|||+|+||+++++++ ++|+ |+||
T Consensus 74 vitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~-~p~~~vivvtNPvd~~t~~~~~~s-~~~~~kviG 141 (141)
T PF00056_consen 74 VITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKY-APDAIVIVVTNPVDVMTYVAQKYS-GFPPNKVIG 141 (141)
T ss_dssp EETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHH-STTSEEEE-SSSHHHHHHHHHHHH-TSSGGGEEE
T ss_pred EEeccccccccccHHHHHHHhHhHHHHHHHHHHHh-CCccEEEEeCCcHHHHHHHHHHhh-CcCcccCcC
Confidence 99999999999999999999999999999999999 699999999999999999999999 5666 8887
No 40
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=99.97 E-value=4.6e-29 Score=258.85 Aligned_cols=285 Identities=18% Similarity=0.188 Sum_probs=204.4
Q ss_pred CEEEEEcCCCchHHH-HHHHHHhc-CCCCCCCceEEEecccccchhhHHHH---HHHHhcccCCCCccEEEecCcccccC
Q 013619 97 VNIAVSGAAGMIANH-LLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGV---AMELEDSLFPLLREVKIGINPYELFE 171 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~-la~~L~~~-~l~~~~~~I~L~l~~~d~~~e~l~g~---a~DL~~~~~~~~~~v~i~~~~~eal~ 171 (439)
|||+|||| |++-.. +...|+.. ..+. ..+|+| +|+|. +++++.+ +.++.+.. ....++..+++..++++
T Consensus 1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~-~~ei~L--~Did~-~~rl~~v~~~~~~~~~~~-~~~~~v~~t~d~~~al~ 74 (419)
T cd05296 1 MKLTIIGG-GSSYTPELIEGLIRRYEELP-VTELVL--VDIDE-EEKLEIVGALAKRMVKKA-GLPIKVHLTTDRREALE 74 (419)
T ss_pred CEEEEECC-chHhHHHHHHHHHhccccCC-CCEEEE--ecCCh-HHHHHHHHHHHHHHHHhh-CCCeEEEEeCCHHHHhC
Confidence 69999997 654221 44455542 3222 245666 44442 6776543 33333222 12236777899999999
Q ss_pred CCcEEEEeCCcCCCCCCchh--------------------hhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHH
Q 013619 172 DAEWALLIGAKPRGPGMERA--------------------GLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI 231 (439)
Q Consensus 172 dADiVIitag~~~kpg~~r~--------------------~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i 231 (439)
|||+||++.+.+..+++++. ....+|++++.++++.|+++ ||+||+|++|||+|++|++
T Consensus 75 gadfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~-~Pda~lin~TNP~~ivt~a 153 (419)
T cd05296 75 GADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEEL-APDAWLINFTNPAGIVTEA 153 (419)
T ss_pred CCCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHH-CCCeEEEEecCHHHHHHHH
Confidence 99999998766555544433 34789999999999999999 7999999999999999999
Q ss_pred HHHHCCCCCCCceeccccchHHHHHHHHHHHhCCCcccceeeEEEe-ccCCcceeccccceecCcchhh-hhh-------
Q 013619 232 CLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKE-IIK------- 302 (439)
Q Consensus 232 ~~k~s~~~p~kvig~gt~LDs~R~~~~lA~~lgv~~~~V~~~~V~G-eHGdt~Vp~~S~~~I~G~pi~~-~i~------- 302 (439)
+++.+ +.|+||+|+. +.|++++||+.+|+++++|+. +|+| || +-|+.+.+.+|+++.. ++.
T Consensus 154 ~~k~~---~~rviGlc~~--~~r~~~~ia~~lg~~~~~v~~-~v~GlNH----~~w~~~~~~~G~D~~p~l~~~~~~~~~ 223 (419)
T cd05296 154 VLRHT---GDRVIGLCNV--PIGLQRRIAELLGVDPEDVFI-DYAGLNH----LGWLRRVLLDGEDVLPELLEDLAALLS 223 (419)
T ss_pred HHHhc---cCCEEeeCCc--HHHHHHHHHHHhCCCHHHceE-EEEeccc----ceeeeeeeECCcccHHHHHHHhhhccc
Confidence 99885 4599999987 699999999999999999996 8999 99 5777788888877543 211
Q ss_pred ---hcccc--------------------HHHHHHH-HH---HhHH-------HH---------------HHhcCCccHHH
Q 013619 303 ---DHKWL--------------------EEGFTET-IQ---KRGG-------LL---------------IKKWGRSSAAS 333 (439)
Q Consensus 303 ---~~~~~--------------------~~ei~~~-v~---~~~~-------~I---------------i~~kG~s~~~s 333 (439)
+..|. .++..+. .. .++. ++ ++.+++..|+.
T Consensus 224 ~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~r~e~~~~~~~~l~~~~~~~~~~~~~~~~~~r~g~~y~e 303 (419)
T cd05296 224 FEEGLLFGPELLRALGALPNEYLRYYYQTDEALEEILEAAGTRGEVVKEVEKELFELYKDPNLDEKPKELEKRGGAGYSE 303 (419)
T ss_pred cccccchHHHHHHhcCCcccchHHHHCCcHHHHHHhhhhccchHHHHHHHHHHHHHHHhccccccChHhhHhhcCcchHH
Confidence 00010 1111111 00 0110 11 12445555678
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCCCCCHHHHHHHHH
Q 013619 334 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (439)
Q Consensus 334 ~A~~i~~aI~~il~~~d~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (439)
.|..|+++|. +|++.++.++|.++|..-++|+|.++++||.++++|+.++- --+|.+..+..++.
T Consensus 304 ~a~~ii~ai~-----~~~~~~~~vNv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~-vg~lP~~~~~l~~~ 368 (419)
T cd05296 304 AALALISAIY-----NDKGDIHVVNVRNNGAIPGLPDDAVVEVPCVVDADGAHPLP-VGPLPPAILGLIQQ 368 (419)
T ss_pred HHHHHHHHHh-----cCCCcEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceecc-CCCCCHHHHHHHHH
Confidence 8888888887 78999999999999988899999999999999999999875 45788877665443
No 41
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=99.96 E-value=2.4e-27 Score=246.96 Aligned_cols=282 Identities=15% Similarity=0.138 Sum_probs=195.7
Q ss_pred CEEEEEcCCCchHHH--HHHHHHhcC-CCCCCCceEEEecccccchhhHH---HHHHHHhcccCCCCccEEEecCccccc
Q 013619 97 VNIAVSGAAGMIANH--LLFKLAAGE-VLGPDQPIALKLLGSERSLQALE---GVAMELEDSLFPLLREVKIGINPYELF 170 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~--la~~L~~~~-l~~~~~~I~L~l~~~d~~~e~l~---g~a~DL~~~~~~~~~~v~i~~~~~eal 170 (439)
|||+|||| |++ .+ +...|++.. .++ ..+|+|+ |+++++++ .++..+.+.. ...-++..++|..+|+
T Consensus 1 ~KI~iIGa-GS~-~tp~li~~l~~~~~~l~-~~ei~L~----DId~~rl~~v~~l~~~~~~~~-g~~~~v~~Ttdr~eAl 72 (437)
T cd05298 1 FKIVIAGG-GST-YTPGIVKSLLDRKEDFP-LRELVLY----DIDAERQEKVAEAVKILFKEN-YPEIKFVYTTDPEEAF 72 (437)
T ss_pred CeEEEECC-cHH-HHHHHHHHHHhCcccCC-CCEEEEE----CCCHHHHHHHHHHHHHHHHhh-CCCeEEEEECCHHHHh
Confidence 79999997 554 33 444555442 222 2457774 44445555 3444444332 2234678899999999
Q ss_pred CCCcEEEEe---CCc---------CCCCCC---c-----hhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHH
Q 013619 171 EDAEWALLI---GAK---------PRGPGM---E-----RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (439)
Q Consensus 171 ~dADiVIit---ag~---------~~kpg~---~-----r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~ 230 (439)
+|||+||++ +|. |.|+|. + ......||++++.++++.|+++ ||+||+|++|||+|++|+
T Consensus 73 ~gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~-~pda~lin~tNP~~~vt~ 151 (437)
T cd05298 73 TDADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKY-SPDAWILNYSNPAAIVAE 151 (437)
T ss_pred CCCCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHH
Confidence 999999996 342 345543 2 4567889999999999999999 799999999999999999
Q ss_pred HHHHHCCCCCC-CceeccccchHHHHHHHHHHHhCCCcccceeeEEEe-ccCCcceeccccceec-Ccchhhhhh----h
Q 013619 231 ICLKNAPSIPA-KNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARIN-GLPVKEIIK----D 303 (439)
Q Consensus 231 i~~k~s~~~p~-kvig~gt~LDs~R~~~~lA~~lgv~~~~V~~~~V~G-eHGdt~Vp~~S~~~I~-G~pi~~~i~----~ 303 (439)
++++. +|+ |+||.|.. ..-++..+|+.+|+++++|+. -+.| || +.|+.+.+.+ |+++...+. +
T Consensus 152 ~~~~~---~~~~kviGlC~~--~~~~~~~la~~lg~~~~~v~~-~~~GlNH----~~w~~~~~~~~G~D~~p~l~e~~~~ 221 (437)
T cd05298 152 ALRRL---FPNARILNICDM--PIAIMDSMAAILGLDRKDLEP-DYFGLNH----FGWFTKIYDKQGEDLLPKLREHVKE 221 (437)
T ss_pred HHHHH---CCCCCEEEECCc--HHHHHHHHHHHhCCCHHHceE-EEEeecc----hhhhhheEECCCCchHHHHHHHHhc
Confidence 99987 343 89999987 677899999999999999995 7799 99 4678888888 877543222 1
Q ss_pred cc--------------cc---------------------------HHHHHHHHH-----------HhHHHH---H-----
Q 013619 304 HK--------------WL---------------------------EEGFTETIQ-----------KRGGLL---I----- 323 (439)
Q Consensus 304 ~~--------------~~---------------------------~~ei~~~v~-----------~~~~~I---i----- 323 (439)
.. |. .+++.+... +...++ .
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~y~~yy~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~ 301 (437)
T cd05298 222 NGYLPPDSDEEHRDPSWNDTFANAKDMMADFPDYLPNTYLQYYLYPDYMVEHSNPNYTRANEVMDGREKRVFEECRKIIE 301 (437)
T ss_pred cCCCcccccccccccCchHHHHHHhhHHHhCCCcCCCchhhHhCChHHHHHHhccccccHHHHHHHHHHHHHHHHhhhhh
Confidence 11 10 011111100 000111 0
Q ss_pred -------HhcCCccHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCcc-CCCCceEEEEEEEEcCCCceEeecCCCCC
Q 013619 324 -------KKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPY-GIAEDIVFSMPCRSKGDGDYELVKDVIFD 395 (439)
Q Consensus 324 -------~~kG~s~~~s~A~~i~~aI~~il~~~d~~~v~~~sv~~~G~~y-Gip~dv~~svPv~ig~~Gv~~iv~~~~L~ 395 (439)
+.++. .++..+..|+++|. +|++.++++||+++| .| ++|+|+++|+||+++++|+.++- --+|.
T Consensus 302 ~~~~~~~~~~~~-~ya~~a~~ii~aI~-----~d~~~~~~vnv~n~G-~i~nL~~d~~vevP~~v~~~Gi~pi~-vg~lP 373 (437)
T cd05298 302 TGTAEGSTFHVD-VHGEYIVDLAASIA-----YNTKERFLVIVENNG-AIPNLPDDAMVEVPAYIGSNGPEPLV-VGKIP 373 (437)
T ss_pred cCChhhhhhhcc-chHHHHHHHHHHHH-----cCCCeEEEEEeecCC-ccCCCCCCcEEEEEEEEeCCCceecc-cCCCC
Confidence 11111 13455566666665 799999999999999 57 58899999999999999999875 46888
Q ss_pred HHHHHHHHHH
Q 013619 396 DYLRKRIAKT 405 (439)
Q Consensus 396 ~~E~~~l~~s 405 (439)
+.....++.-
T Consensus 374 ~~~~~l~~~~ 383 (437)
T cd05298 374 TFYKGLMEQQ 383 (437)
T ss_pred HHHHHHHHHH
Confidence 8777665443
No 42
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.96 E-value=1.9e-27 Score=247.81 Aligned_cols=285 Identities=16% Similarity=0.090 Sum_probs=212.0
Q ss_pred CEEEEEcCCCchHHHHHH--HHHhc-CCCCCCCceEEEecccccchhhHHHHHHHHhcccCCC--CccEEEecCcccccC
Q 013619 97 VNIAVSGAAGMIANHLLF--KLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--LREVKIGINPYELFE 171 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~--~L~~~-~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~--~~~v~i~~~~~eal~ 171 (439)
+||+|||| |++|++++. .++.. .+.+ .+|.| .|+++++++....++.+..... ..++..+++.+++++
T Consensus 1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g--~eV~L----~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~ 73 (423)
T cd05297 1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSG--STIAL----MDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALD 73 (423)
T ss_pred CeEEEECC-ChHHhHHHHHHHHhcCCCCCC--CEEEE----ECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhc
Confidence 59999996 999999877 56644 3333 34766 4677888888888876654222 235666777789999
Q ss_pred CCcEEEEeCCcCCCCCCch----------------------hhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHH
Q 013619 172 DAEWALLIGAKPRGPGMER----------------------AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (439)
Q Consensus 172 dADiVIitag~~~kpg~~r----------------------~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t 229 (439)
|||+||++.+.+..++.++ .....+|++++.++++.++++ +|++|+++++||++++|
T Consensus 74 ~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~-~p~a~~i~~tNPv~i~t 152 (423)
T cd05297 74 GADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEEL-CPDAWLLNYANPMAELT 152 (423)
T ss_pred CCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHH-CCCCEEEEcCChHHHHH
Confidence 9999999977544444433 567789999999999999999 69999999999999999
Q ss_pred HHHHHHCCCCCCCceeccccchHHHHHHHHHHHhCCCcccceeeEEEe-ccCCcceeccccceecCcchhhhhhh---c-
Q 013619 230 LICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD---H- 304 (439)
Q Consensus 230 ~i~~k~s~~~p~kvig~gt~LDs~R~~~~lA~~lgv~~~~V~~~~V~G-eHGdt~Vp~~S~~~I~G~pi~~~i~~---~- 304 (439)
+++++.++ .|+||+|+. +.|+++.+|+.+|+++++|+. +++| || +.||...+.+|+.+...+.+ .
T Consensus 153 ~~~~k~~~---~rviG~c~~--~~~~~~~~a~~l~~~~~~v~~-~~~GlNH----~~w~~~~~~~G~d~~p~l~~~~~~~ 222 (423)
T cd05297 153 WALNRYTP---IKTVGLCHG--VQGTAEQLAKLLGEPPEEVDY-QVAGINH----MAWLLKFEYNGEDLYPLLDEWIEEG 222 (423)
T ss_pred HHHHHhCC---CCEEEECCc--HHHHHHHHHHHhCCCHHHeEE-EEEeecc----HhhhhhheECCcchHHHHHHHHhcc
Confidence 99999984 489999988 999999999999999999996 8999 99 46778888888765432211 0
Q ss_pred --c------cc---------------------------HHHHHHHH--------------HHhHHH-H----------HH
Q 013619 305 --K------WL---------------------------EEGFTETI--------------QKRGGL-L----------IK 324 (439)
Q Consensus 305 --~------~~---------------------------~~ei~~~v--------------~~~~~~-I----------i~ 324 (439)
. |. .++..... .+.-+. . .+
T Consensus 223 ~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (423)
T cd05297 223 SEEWDQLSPVRFDMYRRYGLFPTESSEHLSEYVPHYRKETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLILAEIDKEE 302 (423)
T ss_pred CccchhcccchHHHHHHcCCcccCcchhhhhhccccccchhhHHhhhhcccccchhHHHHHHHHHHhhhhhccchhcchh
Confidence 0 00 00110000 000000 0 01
Q ss_pred hcCCccHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCCCCCHHHHHHHHH
Q 013619 325 KWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (439)
Q Consensus 325 ~kG~s~~~s~A~~i~~aI~~il~~~d~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (439)
..+...++..|..++++|. +|++.++.++|.++|..-|+|+|.++++||.++++|+.++- --+|.+..+..++.
T Consensus 303 ~~~~~~~~e~a~~ii~ai~-----~~~~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~p~~-~g~lp~~~~~l~~~ 376 (423)
T cd05297 303 LDPVKRSGEYASPIIEALV-----TGKPRRINGNVPNNGLIPNLPDDVVVEVPALVDRNGIHPEK-IGPLPPQLAALIRP 376 (423)
T ss_pred ccccccchHHHHHHHHHHh-----cCCceEEEEECCCCCCCCCCCCCcEEEEeeEEcCCCceecc-cCCCCHHHHHHHHH
Confidence 1222334677888888887 78999999999999988899999999999999999999875 56887776665544
Q ss_pred H
Q 013619 405 T 405 (439)
Q Consensus 405 s 405 (439)
-
T Consensus 377 ~ 377 (423)
T cd05297 377 R 377 (423)
T ss_pred H
Confidence 3
No 43
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=99.94 E-value=2.7e-25 Score=227.78 Aligned_cols=288 Identities=19% Similarity=0.203 Sum_probs=202.5
Q ss_pred CCCEEEEEcCCCchHHH-HHH-HHHhcCCCCCCCceEEEecccccchhhHHH---HHHHHhcccCCCCccEEEecCcccc
Q 013619 95 KMVNIAVSGAAGMIANH-LLF-KLAAGEVLGPDQPIALKLLGSERSLQALEG---VAMELEDSLFPLLREVKIGINPYEL 169 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~-la~-~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g---~a~DL~~~~~~~~~~v~i~~~~~ea 169 (439)
++.||+|||| |+++.. ++. .|...+-+.. .+|.| + |+++++++. ++..|.+.. ....++..+++..+|
T Consensus 2 ~~~KI~iIGg-GSt~tp~~v~g~l~~~e~l~~-~el~L--~--Did~~r~~~i~~~~~~~v~~~-g~~~kv~~ttd~~eA 74 (442)
T COG1486 2 KKFKIVIIGG-GSTYTPKLLLGDLARTEELPV-RELAL--Y--DIDEERLKIIAILAKKLVEEA-GAPVKVEATTDRREA 74 (442)
T ss_pred CcceEEEECC-CccccHHHHHHHHhcCccCCc-ceEEE--E--eCCHHHHHHHHHHHHHHHHhh-CCCeEEEEecCHHHH
Confidence 4579999997 655554 222 2222222221 34555 3 445566662 222232222 223467789999999
Q ss_pred cCCCcEEEEeC---C---------cCCCCCCc--------hhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHH
Q 013619 170 FEDAEWALLIG---A---------KPRGPGME--------RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (439)
Q Consensus 170 l~dADiVIita---g---------~~~kpg~~--------r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t 229 (439)
++|||+|+.+. | +|.|+|.- ......|+++++.+|++.|+++ ||+||++++|||+.++|
T Consensus 75 l~gAdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~-~P~Aw~lNytNP~~~vT 153 (442)
T COG1486 75 LEGADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKV-CPNAWMLNYTNPAAIVT 153 (442)
T ss_pred hcCCCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHh-CCCceEEeccChHHHHH
Confidence 99999999963 3 35566532 3455679999999999999999 69999999999999999
Q ss_pred HHHHHHCCCCCCCceeccccchHHHHHHHHHHHhCCCc-ccceeeEEEe-ccCCcceeccccceecCcchhhhhhh----
Q 013619 230 LICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFY-DKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD---- 303 (439)
Q Consensus 230 ~i~~k~s~~~p~kvig~gt~LDs~R~~~~lA~~lgv~~-~~V~~~~V~G-eHGdt~Vp~~S~~~I~G~pi~~~i~~---- 303 (439)
+++.++.+.+ |+||.|.. ..-....||+.||+.+ ++++ +-+.| || +.+|..++.+|.++..-+.+
T Consensus 154 eAv~r~~~~~--K~VGlCh~--~~g~~~~lAe~L~~~~~~~l~-~~~aGlNH----~~w~~~~~~~G~d~~p~l~~~~~~ 224 (442)
T COG1486 154 EAVRRLYPKI--KIVGLCHG--PIGIAMELAEVLGLEPREDLR-YRVAGLNH----MVWILRVRDDGEDLYPELLEALEE 224 (442)
T ss_pred HHHHHhCCCC--cEEeeCCc--hHHHHHHHHHHhCCCchhcee-EEEeechh----hhhhhHhhhcCccchHHHHHHHhc
Confidence 9999986422 89999887 6788999999999975 9998 47899 99 46777777777554321100
Q ss_pred --------------cccc-----------------------------HHHH------HHHHHHhHHH-------------
Q 013619 304 --------------HKWL-----------------------------EEGF------TETIQKRGGL------------- 321 (439)
Q Consensus 304 --------------~~~~-----------------------------~~ei------~~~v~~~~~~------------- 321 (439)
..|. .+++ .+.+.++--+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ra~ev~~re~~~~~~~~~~~~~~~ 304 (442)
T COG1486 225 GGSPSEPENKNIQSPVWIDMFLKYGYPVLPSSYHRYYYYPYDMKEKKPDEIEKFGTRANEVMKREKELFELYKKPELKEK 304 (442)
T ss_pred cccCCccccccccCcchHHHHHHhCcCcccCcchhhheehHhhhhccchhhhhcCCCHHHHHHHHHHHHHHHhhhhhhcC
Confidence 0010 0000 0111111100
Q ss_pred --HHHhcCCc--cHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCCCCCHH
Q 013619 322 --LIKKWGRS--SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDY 397 (439)
Q Consensus 322 --Ii~~kG~s--~~~s~A~~i~~aI~~il~~~d~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~~L~~~ 397 (439)
..++++.+ .++..|..|+++|. +|++.++.++|.++|..-++|+|.++++||+++++|+.++. ...|.+.
T Consensus 305 p~~~~~~~~~~~~~~e~a~~ii~Ai~-----~~~~~~~~vNv~N~G~I~nlp~D~vVEvpc~Vd~~Gi~P~~-~g~lP~~ 378 (442)
T COG1486 305 PEELEKRIGAGKYSSEYASNIINAIE-----NNKPSRIYVNVRNNGAITNLPDDAVVEVPCLVDRNGIHPLA-VGDLPEF 378 (442)
T ss_pred chhhhhcCCcccccHHHHHHHHHHHh-----cCCceEEEEEcCCCccccCCCCCeEEEeeEEecCCCCcccc-cCCCCHH
Confidence 11234443 55678889988887 79999999999999988999999999999999999999987 6899998
Q ss_pred HHHHHHHH
Q 013619 398 LRKRIAKT 405 (439)
Q Consensus 398 E~~~l~~s 405 (439)
.+..++..
T Consensus 379 ~~~l~~~~ 386 (442)
T COG1486 379 VKGLMHTN 386 (442)
T ss_pred HHHHHHHH
Confidence 88866654
No 44
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=99.74 E-value=3.9e-17 Score=151.33 Aligned_cols=156 Identities=19% Similarity=0.163 Sum_probs=112.1
Q ss_pred EEEEEcCCCchHHH-HHH-HHHhcCCCCCCCceEEEecccccchhhHH---HHHHHHhcccCCCCccEEEecCcccccCC
Q 013619 98 NIAVSGAAGMIANH-LLF-KLAAGEVLGPDQPIALKLLGSERSLQALE---GVAMELEDSLFPLLREVKIGINPYELFED 172 (439)
Q Consensus 98 KI~IIGA~G~VG~~-la~-~L~~~~l~~~~~~I~L~l~~~d~~~e~l~---g~a~DL~~~~~~~~~~v~i~~~~~eal~d 172 (439)
||+|||| |++-+. +.. .+...+-++. .+|+| + |+++++|+ ..+..+.+.. ....+++.++|..++++|
T Consensus 1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~~-~ei~L--~--Did~~RL~~~~~~~~~~~~~~-~~~~~v~~ttd~~eAl~g 73 (183)
T PF02056_consen 1 KITIIGA-GSTYFPLLLLGDLLRTEELSG-SEIVL--M--DIDEERLEIVERLARRMVEEA-GADLKVEATTDRREALEG 73 (183)
T ss_dssp EEEEETT-TSCCHHHHHHHHHHCTTTSTE-EEEEE--E---SCHHHHHHHHHHHHHHHHHC-TTSSEEEEESSHHHHHTT
T ss_pred CEEEECC-chHhhHHHHHHHHhcCccCCC-cEEEE--E--cCCHHHHHHHHHHHHHHHHhc-CCCeEEEEeCCHHHHhCC
Confidence 8999997 777666 223 3333333332 34666 3 45567777 3444444333 233467889999999999
Q ss_pred CcEEEEeC---C---------cCCCCCCc----------hhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHH
Q 013619 173 AEWALLIG---A---------KPRGPGME----------RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (439)
Q Consensus 173 ADiVIita---g---------~~~kpg~~----------r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~ 230 (439)
||+||++. | .|.|+|.. ......|+++++.++++.|+++ ||+||+|++|||+.++|+
T Consensus 74 ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~-~PdAw~iNytNP~~~vt~ 152 (183)
T PF02056_consen 74 ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEEL-CPDAWLINYTNPMGIVTE 152 (183)
T ss_dssp ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHH-TTTSEEEE-SSSHHHHHH
T ss_pred CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEeccChHHHHHH
Confidence 99999973 2 36666542 4567889999999999999999 799999999999999999
Q ss_pred HHHHHCCCCCCCceeccccchHHHHHHHHHHHhCC
Q 013619 231 ICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGV 265 (439)
Q Consensus 231 i~~k~s~~~p~kvig~gt~LDs~R~~~~lA~~lgv 265 (439)
++.|+.++. |++|.|.. ..-+...+|+.||.
T Consensus 153 a~~r~~~~~--k~vGlCh~--~~~~~~~la~~L~~ 183 (183)
T PF02056_consen 153 ALSRYTPKI--KVVGLCHG--PQGTRRQLAKLLGM 183 (183)
T ss_dssp HHHHHSTTS--EEEEE-SH--HHHHHHHHHHHHT-
T ss_pred HHHHhCCCC--CEEEECCC--HHHHHHHHHHHhCc
Confidence 999987544 89999877 67788899998874
No 45
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.05 E-value=9.2e-06 Score=66.90 Aligned_cols=95 Identities=23% Similarity=0.276 Sum_probs=64.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEec-CcccccCCCcEE
Q 013619 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDAEWA 176 (439)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~-~~~eal~dADiV 176 (439)
||+|||+ |++|.+++..|+..+. .. .+|.+. .+++.++++..+.++. +.+.. +..+++++||+|
T Consensus 1 kI~iIG~-G~mg~al~~~l~~~g~-~~-~~v~~~---~~r~~~~~~~~~~~~~---------~~~~~~~~~~~~~~advv 65 (96)
T PF03807_consen 1 KIGIIGA-GNMGSALARGLLASGI-KP-HEVIIV---SSRSPEKAAELAKEYG---------VQATADDNEEAAQEADVV 65 (96)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTS--G-GEEEEE---EESSHHHHHHHHHHCT---------TEEESEEHHHHHHHTSEE
T ss_pred CEEEECC-CHHHHHHHHHHHHCCC-Cc-eeEEee---ccCcHHHHHHHHHhhc---------cccccCChHHhhccCCEE
Confidence 8999995 9999999999998876 22 345531 3788888776655442 12333 578899999999
Q ss_pred EEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 013619 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 177 Iitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNP 224 (439)
|++. +| +.+.++.+.+... .++.+||-++||
T Consensus 66 ilav----~p------------~~~~~v~~~i~~~-~~~~~vis~~ag 96 (96)
T PF03807_consen 66 ILAV----KP------------QQLPEVLSEIPHL-LKGKLVISIAAG 96 (96)
T ss_dssp EE-S-----G------------GGHHHHHHHHHHH-HTTSEEEEESTT
T ss_pred EEEE----CH------------HHHHHHHHHHhhc-cCCCEEEEeCCC
Confidence 9983 22 2344555555333 467788888876
No 46
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=97.99 E-value=5.4e-05 Score=72.27 Aligned_cols=103 Identities=21% Similarity=0.130 Sum_probs=65.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccC--CCCccEEEecCcccccCCCc
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIGINPYELFEDAE 174 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~--~~~~~v~i~~~~~eal~dAD 174 (439)
|||+|||++|++|++++..|+..+. ++.+ .+++.++++..+.++.+... .+..++.. .+..++++++|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~-----~V~v----~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~-~~~~ea~~~aD 70 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN-----KIII----GSRDLEKAEEAAAKALEELGHGGSDIKVTG-ADNAEAAKRAD 70 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC-----EEEE----EEcCHHHHHHHHHHHHhhccccCCCceEEE-eChHHHHhcCC
Confidence 6999998559999999999998651 3555 36777777766665543210 11111222 35678899999
Q ss_pred EEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 013619 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (439)
Q Consensus 175 iVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd 226 (439)
+||++... +.+.++.+.+.... .+.+||-++||.+
T Consensus 71 vVilavp~----------------~~~~~~l~~l~~~l-~~~vvI~~~ngi~ 105 (219)
T TIGR01915 71 VVILAVPW----------------DHVLKTLESLRDEL-SGKLVISPVVPLA 105 (219)
T ss_pred EEEEECCH----------------HHHHHHHHHHHHhc-cCCEEEEeccCce
Confidence 99998421 22333334444332 3467899999975
No 47
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.85 E-value=6e-05 Score=68.32 Aligned_cols=99 Identities=24% Similarity=0.272 Sum_probs=61.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhccc-CC---CCccEEEecCcccccCCC
Q 013619 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-FP---LLREVKIGINPYELFEDA 173 (439)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~-~~---~~~~v~i~~~~~eal~dA 173 (439)
||+|+|| |+.|.++|..|...+. ++.|+ .++++.++.+-.+-.... .+ +..++.+++|..+++++|
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g~-----~V~l~----~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~a 70 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNGH-----EVTLW----GRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDA 70 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCTE-----EEEEE----TSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC-----EEEEE----eccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcc
Confidence 8999996 9999999999998872 36663 445444443322111111 01 113677888888999999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeC
Q 013619 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (439)
Q Consensus 174 DiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvt 222 (439)
|+||++. | .+-++++.++|..+..++.++++++
T Consensus 71 d~Iiiav--P--------------s~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 71 DIIIIAV--P--------------SQAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp SEEEE-S-----------------GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred cEEEecc--c--------------HHHHHHHHHHHhhccCCCCEEEEec
Confidence 9999872 2 2446677777777643455555543
No 48
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.83 E-value=8.6e-05 Score=73.76 Aligned_cols=104 Identities=20% Similarity=0.266 Sum_probs=61.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHH---hcc---cCCC---------CccE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL---EDS---LFPL---------LREV 160 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL---~~~---~~~~---------~~~v 160 (439)
.+||+|||+ |.+|..+|..++..+. ++.++ |++.+.++.....+ .+. .... ..++
T Consensus 3 ~~kIaViGa-G~mG~~iA~~la~~G~-----~V~l~----d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 72 (287)
T PRK08293 3 IKNVTVAGA-GVLGSQIAFQTAFHGF-----DVTIY----DISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRI 72 (287)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhcCC-----eEEEE----eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCe
Confidence 469999995 9999999999987653 36663 55555444322111 110 0001 1245
Q ss_pred EEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 013619 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (439)
Q Consensus 161 ~i~~~~~eal~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPv 225 (439)
+.+++..+++++||+||.+.. .+.++.+++.+.+.++..++++| ++|..
T Consensus 73 ~~~~d~~~a~~~aDlVieavp--------------e~~~~k~~~~~~l~~~~~~~~ii--~sntS 121 (287)
T PRK08293 73 TLTTDLAEAVKDADLVIEAVP--------------EDPEIKGDFYEELAKVAPEKTIF--ATNSS 121 (287)
T ss_pred EEeCCHHHHhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCCEE--EECcc
Confidence 566666678999999999842 11344445555566664456644 34544
No 49
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=97.81 E-value=4.1e-05 Score=71.18 Aligned_cols=101 Identities=22% Similarity=0.255 Sum_probs=57.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhc----cc-CC---------CCccEEEe
Q 013619 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED----SL-FP---------LLREVKIG 163 (439)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~----~~-~~---------~~~~v~i~ 163 (439)
||+|||| |.+|..+|..++..+. ++.|+ |++.+.++.....+.+ .. .. ...+++.+
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~-----~V~l~----d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 70 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGY-----EVTLY----DRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT 70 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTS-----EEEEE-----SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCC-----cEEEE----ECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc
Confidence 7999996 9999999999998874 36663 5555555432222221 10 00 12356666
Q ss_pred cCcccccCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 013619 164 INPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (439)
Q Consensus 164 ~~~~eal~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPv 225 (439)
++ ++++.|||+||=+. | + +.++=+++-..|.+++.|+++ ++||-.
T Consensus 71 ~d-l~~~~~adlViEai--~-----E-------~l~~K~~~~~~l~~~~~~~~i--lasnTS 115 (180)
T PF02737_consen 71 TD-LEEAVDADLVIEAI--P-----E-------DLELKQELFAELDEICPPDTI--LASNTS 115 (180)
T ss_dssp SS-GGGGCTESEEEE-S--------S-------SHHHHHHHHHHHHCCS-TTSE--EEE--S
T ss_pred cC-HHHHhhhheehhhc--c-----c-------cHHHHHHHHHHHHHHhCCCce--EEecCC
Confidence 55 55555999998652 1 1 234445555667777556775 455654
No 50
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.76 E-value=0.00033 Score=66.43 Aligned_cols=96 Identities=25% Similarity=0.239 Sum_probs=65.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (439)
||+++|+| +|++|++++..+...+. ++.+ ...+.++++++.+..+.-. .......++.+.||+
T Consensus 1 m~~~~i~G-tGniG~alA~~~a~ag~-----eV~i---gs~r~~~~~~a~a~~l~~~--------i~~~~~~dA~~~aDV 63 (211)
T COG2085 1 MMIIAIIG-TGNIGSALALRLAKAGH-----EVII---GSSRGPKALAAAAAALGPL--------ITGGSNEDAAALADV 63 (211)
T ss_pred CcEEEEec-cChHHHHHHHHHHhCCC-----eEEE---ecCCChhHHHHHHHhhccc--------cccCChHHHHhcCCE
Confidence 68999999 59999999999998762 3554 1344566666666555421 234567899999999
Q ss_pred EEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 013619 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (439)
Q Consensus 176 VIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPv 225 (439)
||++.-+ .-+.++.+.+... -.+-+||-.|||.
T Consensus 64 VvLAVP~----------------~a~~~v~~~l~~~-~~~KIvID~tnp~ 96 (211)
T COG2085 64 VVLAVPF----------------EAIPDVLAELRDA-LGGKIVIDATNPI 96 (211)
T ss_pred EEEeccH----------------HHHHhHHHHHHHH-hCCeEEEecCCCc
Confidence 9998321 2234444455543 2356899999994
No 51
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.76 E-value=0.00012 Score=73.02 Aligned_cols=75 Identities=16% Similarity=0.170 Sum_probs=47.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcc----cC-C---------CCcc
Q 013619 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS----LF-P---------LLRE 159 (439)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~----~~-~---------~~~~ 159 (439)
..+.||+|||| |.+|..+|..++..+. ++.| .|++.+.++.....+... .. . ...+
T Consensus 3 ~~~~~V~ViGa-G~mG~~iA~~~a~~G~-----~V~l----~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~ 72 (286)
T PRK07819 3 DAIQRVGVVGA-GQMGAGIAEVCARAGV-----DVLV----FETTEELATAGRNRIEKSLERAVSRGKLTERERDAALAR 72 (286)
T ss_pred CCccEEEEEcc-cHHHHHHHHHHHhCCC-----EEEE----EECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhC
Confidence 34569999995 9999999999998764 3666 355656555322111111 00 0 1124
Q ss_pred EEEecCcccccCCCcEEEEe
Q 013619 160 VKIGINPYELFEDAEWALLI 179 (439)
Q Consensus 160 v~i~~~~~eal~dADiVIit 179 (439)
++.++ +++++++||+||-+
T Consensus 73 l~~~~-~~~~~~~~d~ViEa 91 (286)
T PRK07819 73 LRFTT-DLGDFADRQLVIEA 91 (286)
T ss_pred eEeeC-CHHHhCCCCEEEEe
Confidence 44544 55889999999976
No 52
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.75 E-value=8.6e-05 Score=69.38 Aligned_cols=105 Identities=15% Similarity=0.177 Sum_probs=59.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCC--------------CccEEE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--------------LREVKI 162 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~--------------~~~v~i 162 (439)
|||+||| .|.||..+|..|+..+. .+.- +|+|+++.+.+ ++...++ ..+.+.
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G~-----~V~g----~D~~~~~v~~l----~~g~~p~~E~~l~~ll~~~~~~~~l~~ 66 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKGH-----QVIG----VDIDEEKVEAL----NNGELPIYEPGLDELLKENVSAGRLRA 66 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTS-----EEEE----E-S-HHHHHHH----HTTSSSS-CTTHHHHHHHHHHTTSEEE
T ss_pred CEEEEEC-CCcchHHHHHHHHhCCC-----EEEE----EeCChHHHHHH----hhccccccccchhhhhccccccccchh
Confidence 7999999 59999999999999873 1322 46776665543 3332222 135678
Q ss_pred ecCcccccCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEe
Q 013619 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVV 221 (439)
Q Consensus 163 ~~~~~eal~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvv 221 (439)
+++..+++++||++|++.+.|..++.+ .| ...+.+.++.|.++..++.+|++=
T Consensus 67 t~~~~~ai~~adv~~I~VpTP~~~~~~-~D-----ls~v~~a~~~i~~~l~~~~lvV~~ 119 (185)
T PF03721_consen 67 TTDIEEAIKDADVVFICVPTPSDEDGS-PD-----LSYVESAIESIAPVLRPGDLVVIE 119 (185)
T ss_dssp ESEHHHHHHH-SEEEE----EBETTTS-BE-----THHHHHHHHHHHHHHCSCEEEEES
T ss_pred hhhhhhhhhccceEEEecCCCccccCC-cc-----HHHHHHHHHHHHHHHhhcceEEEc
Confidence 877778899999999998887655321 11 133444444555554444554443
No 53
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.75 E-value=0.0001 Score=72.91 Aligned_cols=123 Identities=15% Similarity=0.131 Sum_probs=67.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHH-H------HHHHhccc-CC------CCccEE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG-V------AMELEDSL-FP------LLREVK 161 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g-~------a~DL~~~~-~~------~~~~v~ 161 (439)
+.||+|||+ |.+|..++..++..+. ++.+ +|++.++++. . ..++.+.. .. ...+++
T Consensus 3 ~~kI~VIG~-G~mG~~ia~~la~~g~-----~V~~----~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~ 72 (282)
T PRK05808 3 IQKIGVIGA-GTMGNGIAQVCAVAGY-----DVVM----VDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARIT 72 (282)
T ss_pred ccEEEEEcc-CHHHHHHHHHHHHCCC-----ceEE----EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE
Confidence 458999995 9999999999998764 2655 3566666531 1 01111110 00 012445
Q ss_pred EecCcccccCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC
Q 013619 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA 241 (439)
Q Consensus 162 i~~~~~eal~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~ 241 (439)
.++ +++++++||+||++.- + +..+-.++.+.+.+++.++++| +||-..+-...+.... ..|.
T Consensus 73 ~~~-~~~~~~~aDlVi~av~----e----------~~~~k~~~~~~l~~~~~~~~il--~s~ts~~~~~~la~~~-~~~~ 134 (282)
T PRK05808 73 GTT-DLDDLKDADLVIEAAT----E----------NMDLKKKIFAQLDEIAKPEAIL--ATNTSSLSITELAAAT-KRPD 134 (282)
T ss_pred EeC-CHHHhccCCeeeeccc----c----------cHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHHHhh-CCCc
Confidence 444 5678999999999842 1 1233334444566665567765 4554443333333333 2333
Q ss_pred Cceec
Q 013619 242 KNFHA 246 (439)
Q Consensus 242 kvig~ 246 (439)
|++|+
T Consensus 135 r~ig~ 139 (282)
T PRK05808 135 KVIGM 139 (282)
T ss_pred ceEEe
Confidence 55543
No 54
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.70 E-value=0.00029 Score=70.59 Aligned_cols=76 Identities=17% Similarity=0.205 Sum_probs=48.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhccc---C------CCCccEEEec
Q 013619 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL---F------PLLREVKIGI 164 (439)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~---~------~~~~~v~i~~ 164 (439)
.+.+||+|||+ |.+|..++..|+..+. ++.+ +|++.+.++.....+.... . ....+++.++
T Consensus 2 ~~~~~I~vIGa-G~mG~~iA~~l~~~g~-----~V~~----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 71 (311)
T PRK06130 2 NPIQNLAIIGA-GTMGSGIAALFARKGL-----QVVL----IDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEA 71 (311)
T ss_pred CCccEEEEECC-CHHHHHHHHHHHhCCC-----eEEE----EECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeC
Confidence 44579999995 9999999999988663 2555 3566666554333221110 0 0112345555
Q ss_pred CcccccCCCcEEEEe
Q 013619 165 NPYELFEDAEWALLI 179 (439)
Q Consensus 165 ~~~eal~dADiVIit 179 (439)
+..+++++||+||++
T Consensus 72 ~~~~~~~~aDlVi~a 86 (311)
T PRK06130 72 GLAAAVSGADLVIEA 86 (311)
T ss_pred CHHHHhccCCEEEEe
Confidence 555679999999997
No 55
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.69 E-value=0.0002 Score=72.62 Aligned_cols=124 Identities=13% Similarity=0.167 Sum_probs=69.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhc-------c-cC--CCCccEEEecC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED-------S-LF--PLLREVKIGIN 165 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~-------~-~~--~~~~~v~i~~~ 165 (439)
..||+|||+ |.+|..+|..++..+. ++.|+ |++.+.++.....+.. . .. ....+++..++
T Consensus 7 i~~VaVIGa-G~MG~giA~~~a~aG~-----~V~l~----D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 76 (321)
T PRK07066 7 IKTFAAIGS-GVIGSGWVARALAHGL-----DVVAW----DPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVAT 76 (321)
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCC-----eEEEE----eCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCC
Confidence 358999995 9999999999998764 36663 4554444322111110 1 00 01134556666
Q ss_pred cccccCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCcee
Q 013619 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFH 245 (439)
Q Consensus 166 ~~eal~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~kvig 245 (439)
..+++++||+||-+. | ++. +-...++ ..+.+++.|++ |+.||-......-+.... ..|.|++|
T Consensus 77 l~~av~~aDlViEav--p-----E~l---~vK~~lf----~~l~~~~~~~a--IlaSnTS~l~~s~la~~~-~~p~R~~g 139 (321)
T PRK07066 77 IEACVADADFIQESA--P-----ERE---ALKLELH----ERISRAAKPDA--IIASSTSGLLPTDFYARA-THPERCVV 139 (321)
T ss_pred HHHHhcCCCEEEECC--c-----CCH---HHHHHHH----HHHHHhCCCCe--EEEECCCccCHHHHHHhc-CCcccEEE
Confidence 668899999999763 1 221 1112334 45566655666 667777755444343333 34445554
Q ss_pred c
Q 013619 246 A 246 (439)
Q Consensus 246 ~ 246 (439)
+
T Consensus 140 ~ 140 (321)
T PRK07066 140 G 140 (321)
T ss_pred E
Confidence 3
No 56
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.67 E-value=0.00026 Score=70.48 Aligned_cols=102 Identities=14% Similarity=0.162 Sum_probs=60.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhc-------cc--CCC--------Ccc
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED-------SL--FPL--------LRE 159 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~-------~~--~~~--------~~~ 159 (439)
.||+|||+ |.+|..++..++..+. +|.+ .|++.+.++.....+.+ .. ... ..+
T Consensus 4 ~~I~ViGa-G~mG~~iA~~la~~G~-----~V~l----~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~ 73 (291)
T PRK06035 4 KVIGVVGS-GVMGQGIAQVFARTGY-----DVTI----VDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMAR 73 (291)
T ss_pred cEEEEECc-cHHHHHHHHHHHhcCC-----eEEE----EeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhC
Confidence 58999995 9999999999998763 3666 36666666532221111 00 000 112
Q ss_pred EEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 160 v~i~~~~~eal~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
+..++ +++++++||+||.+... +.++.+++.+.+.++..++++++..|.
T Consensus 74 i~~~~-~~~~~~~aDlVieav~e--------------~~~~k~~~~~~l~~~~~~~~il~S~ts 122 (291)
T PRK06035 74 IRTST-SYESLSDADFIVEAVPE--------------KLDLKRKVFAELERNVSPETIIASNTS 122 (291)
T ss_pred cEeeC-CHHHhCCCCEEEEcCcC--------------cHHHHHHHHHHHHhhCCCCeEEEEcCC
Confidence 33443 44789999999997421 123344455556666556776654444
No 57
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.66 E-value=0.00018 Score=71.56 Aligned_cols=74 Identities=18% Similarity=0.243 Sum_probs=47.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcc----c--CCC--------CccEE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS----L--FPL--------LREVK 161 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~----~--~~~--------~~~v~ 161 (439)
.+||+|||+ |.+|..++..|+..+. ++.+ .|++.+.++.....+... . ..+ ..+++
T Consensus 4 ~~kI~vIGa-G~mG~~iA~~la~~G~-----~V~l----~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~ 73 (292)
T PRK07530 4 IKKVGVIGA-GQMGNGIAHVCALAGY-----DVLL----NDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIS 73 (292)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE
Confidence 468999995 9999999999998763 3666 366666665432222111 0 001 12345
Q ss_pred EecCcccccCCCcEEEEeC
Q 013619 162 IGINPYELFEDAEWALLIG 180 (439)
Q Consensus 162 i~~~~~eal~dADiVIita 180 (439)
.+. +++++++||+||.+.
T Consensus 74 ~~~-~~~~~~~aD~Vieav 91 (292)
T PRK07530 74 TAT-DLEDLADCDLVIEAA 91 (292)
T ss_pred eeC-CHHHhcCCCEEEEcC
Confidence 544 567899999999973
No 58
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.63 E-value=0.00048 Score=70.83 Aligned_cols=113 Identities=17% Similarity=0.152 Sum_probs=71.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCC--------------CccEEE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--------------LREVKI 162 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~--------------~~~v~i 162 (439)
|||+||| +|.||...+-.|+..+- + ++. .|+++++.+. |++...|. ..+.+.
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~GH----e-Vv~----vDid~~KV~~----ln~g~~PI~EpgLe~ll~~~~~~gRl~f 66 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELGH----E-VVC----VDIDESKVEL----LNKGISPIYEPGLEELLKENLASGRLRF 66 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcCC----e-EEE----EeCCHHHHHH----HhCCCCCCcCccHHHHHHhccccCcEEE
Confidence 7999999 69999999999987651 2 433 2555555543 23332221 124788
Q ss_pred ecCcccccCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCC-e-EEEEeCCchhHHHH
Q 013619 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN-V-KVIVVGNPCNTNAL 230 (439)
Q Consensus 163 ~~~~~eal~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~-a-ivIvvtNPvd~~t~ 230 (439)
+++-.+++++||+++|+.|.|.++.- -.| ...+...++.|.++ .+. . +|+=-|=|+.+...
T Consensus 67 Ttd~~~a~~~adv~fIavgTP~~~dg-~aD-----l~~V~ava~~i~~~-~~~~~vvV~KSTVPvGt~~~ 129 (414)
T COG1004 67 TTDYEEAVKDADVVFIAVGTPPDEDG-SAD-----LSYVEAVAKDIGEI-LDGKAVVVIKSTVPVGTTEE 129 (414)
T ss_pred EcCHHHHHhcCCEEEEEcCCCCCCCC-Ccc-----HHHHHHHHHHHHhh-cCCCeEEEEcCCCCCCchHH
Confidence 88888899999999999999887622 121 35566666666665 343 2 23323455544433
No 59
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=97.59 E-value=0.00029 Score=70.16 Aligned_cols=74 Identities=19% Similarity=0.207 Sum_probs=46.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHH-------HHhcccCCC--------Ccc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM-------ELEDSLFPL--------LRE 159 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~-------DL~~~~~~~--------~~~ 159 (439)
+..||+|||+ |.+|..+|..++..+. ++.+ .|++.++++.... ++.+.. .. ...
T Consensus 3 ~~~~V~vIG~-G~mG~~iA~~l~~~G~-----~V~~----~d~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~ 71 (295)
T PLN02545 3 EIKKVGVVGA-GQMGSGIAQLAAAAGM-----DVWL----LDSDPAALSRGLDSISSSLARLVKKG-KMSQEEADATLGR 71 (295)
T ss_pred CcCEEEEECC-CHHHHHHHHHHHhcCC-----eEEE----EeCCHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHhc
Confidence 4568999995 9999999999998763 3655 3566555542111 121110 00 012
Q ss_pred EEEecCcccccCCCcEEEEeC
Q 013619 160 VKIGINPYELFEDAEWALLIG 180 (439)
Q Consensus 160 v~i~~~~~eal~dADiVIita 180 (439)
... +++++++++||+||.+.
T Consensus 72 ~~~-~~~~~~~~~aD~Vieav 91 (295)
T PLN02545 72 IRC-TTNLEELRDADFIIEAI 91 (295)
T ss_pred eEe-eCCHHHhCCCCEEEEcC
Confidence 333 34568899999999873
No 60
>PRK07680 late competence protein ComER; Validated
Probab=97.52 E-value=0.00069 Score=66.78 Aligned_cols=100 Identities=11% Similarity=0.188 Sum_probs=64.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (439)
|||+|||+ |++|.+++..|...+.+.. .+|.+ .+++.++++..+.++ ..+.+..+..+.+++||+|
T Consensus 1 m~I~iIG~-G~mG~ala~~L~~~g~~~~-~~v~v----~~r~~~~~~~~~~~~--------~g~~~~~~~~~~~~~aDiV 66 (273)
T PRK07680 1 MNIGFIGT-GNMGTILIEAFLESGAVKP-SQLTI----TNRTPAKAYHIKERY--------PGIHVAKTIEEVISQSDLI 66 (273)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCc-ceEEE----ECCCHHHHHHHHHHc--------CCeEEECCHHHHHHhCCEE
Confidence 58999995 9999999999988764322 23555 467766655432211 1234555666778999999
Q ss_pred EEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 013619 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (439)
Q Consensus 177 Iitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd 226 (439)
|++. +| +.+.++.+.+..+..++.+||.++|.+.
T Consensus 67 ilav----~p------------~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 67 FICV----KP------------LDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred EEec----CH------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 9984 22 2233444444443245678899999774
No 61
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.47 E-value=0.00071 Score=69.04 Aligned_cols=108 Identities=15% Similarity=0.047 Sum_probs=68.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhccc-CC----CCccEEEecCcc
Q 013619 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-FP----LLREVKIGINPY 167 (439)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~-~~----~~~~v~i~~~~~ 167 (439)
.+++|||+|||| |.+|.+++..|...+ . +.++ .++++..+.+..+-.... .+ +..++.++++..
T Consensus 4 ~~~~mkI~IiGa-Ga~G~alA~~La~~g---~---v~l~----~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~ 72 (341)
T PRK12439 4 AKREPKVVVLGG-GSWGTTVASICARRG---P---TLQW----VRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFA 72 (341)
T ss_pred ccCCCeEEEECC-CHHHHHHHHHHHHCC---C---EEEE----eCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHH
Confidence 467899999995 999999999998765 1 4443 244444433322110000 01 112456677777
Q ss_pred cccCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhH
Q 013619 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (439)
Q Consensus 168 eal~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~ 227 (439)
++++++|+||++.- .+.++++.+.+..+..++..+|.++|-.+.
T Consensus 73 ~a~~~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 73 EAANCADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred HHHhcCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence 78999999999731 234566666666654567788889987753
No 62
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.47 E-value=0.00088 Score=66.34 Aligned_cols=68 Identities=18% Similarity=0.277 Sum_probs=47.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (439)
+||+|||+ |++|.+++..|+..+.... ..|.. +|++.++++....++ . +.+..+..+.+++||+|
T Consensus 3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~-~~I~v----~~r~~~~~~~l~~~~-----g----~~~~~~~~e~~~~aDiI 67 (272)
T PRK12491 3 KQIGFIGC-GNMGIAMIGGMINKNIVSP-DQIIC----SDLNVSNLKNASDKY-----G----ITITTNNNEVANSADIL 67 (272)
T ss_pred CeEEEECc-cHHHHHHHHHHHHCCCCCC-ceEEE----ECCCHHHHHHHHHhc-----C----cEEeCCcHHHHhhCCEE
Confidence 58999995 9999999999998875432 23544 477766655432211 1 23455666778999999
Q ss_pred EEe
Q 013619 177 LLI 179 (439)
Q Consensus 177 Iit 179 (439)
|++
T Consensus 68 iLa 70 (272)
T PRK12491 68 ILS 70 (272)
T ss_pred EEE
Confidence 997
No 63
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.43 E-value=0.001 Score=66.13 Aligned_cols=74 Identities=16% Similarity=0.242 Sum_probs=47.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcc----c-CC---------CCccEEE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS----L-FP---------LLREVKI 162 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~----~-~~---------~~~~v~i 162 (439)
.||+|||+ |.+|..+|..|+..+. ++.+ .|++++.++.....+... . .. ....++.
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~-----~V~~----~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 71 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGF-----QTTL----VDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY 71 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCC-----cEEE----EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE
Confidence 48999995 9999999999997763 3656 356666655432211110 0 00 0123556
Q ss_pred ecCcccccCCCcEEEEeC
Q 013619 163 GINPYELFEDAEWALLIG 180 (439)
Q Consensus 163 ~~~~~eal~dADiVIita 180 (439)
+.+..+++++||+||.+.
T Consensus 72 ~~~~~~~~~~aD~Vi~av 89 (288)
T PRK09260 72 SLDLKAAVADADLVIEAV 89 (288)
T ss_pred eCcHHHhhcCCCEEEEec
Confidence 666668999999999874
No 64
>PF11975 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-terminal domain; InterPro: IPR022616 This domain is found primarily in bacterial family 4 glycosyl hydrolases. It is found in the C terminus. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1UP4_A 1UP6_C 1UP7_E 1VJT_A 1U8X_X 1S6Y_A 3FEF_D 1OBB_A.
Probab=97.40 E-value=0.00095 Score=64.41 Aligned_cols=66 Identities=21% Similarity=0.299 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceEeecCCCCCHHHHHHHHHHH
Q 013619 335 AVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTE 406 (439)
Q Consensus 335 A~~i~~aI~~il~~~d~~~v~~~sv~~~G~~yGip~dv~~svPv~ig~~Gv~~iv~~~~L~~~E~~~l~~sa 406 (439)
+..++++|. +|.+.++.++|.++|..-++|+|.++++||+|+++|+.++. -.+|.+..+..++...
T Consensus 139 a~~~i~~i~-----~~~~~~~~vNv~N~G~I~nLp~davVEvp~~v~~~Gi~P~~-~g~lP~~~~~li~~~~ 204 (232)
T PF11975_consen 139 AEAAIEAIY-----NDKPKRFVVNVPNNGAIPNLPDDAVVEVPCYVDGDGIHPVA-VGPLPPAIAGLIQQVK 204 (232)
T ss_dssp HHHHHHHHH-----HSSEEEEEEEEE-TTSSTTS-TTSEEEEEEEEETTEEEEB--SB---HHHHHHHHHHH
T ss_pred HHHHHHHHh-----cCCCeEEEEECCCCCccCCCCCCcEEEEEEEEcCCeeEecc-CCCCCHHHHHHHHHHH
Confidence 445555564 68899999999999988899999999999999999999976 6799888888665543
No 65
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.40 E-value=0.00071 Score=66.71 Aligned_cols=98 Identities=24% Similarity=0.318 Sum_probs=64.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (439)
++||++||+ |++|.+++..|...+.+.. ..|.+ ++++.+++...+.++ +. . .+.+..+...++|+
T Consensus 1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~-~~I~v----~~~~~e~~~~l~~~~-----g~--~--~~~~~~~~~~~adv 65 (266)
T COG0345 1 MMKIGFIGA-GNMGEAILSGLLKSGALPP-EEIIV----TNRSEEKRAALAAEY-----GV--V--TTTDNQEAVEEADV 65 (266)
T ss_pred CceEEEEcc-CHHHHHHHHHHHhcCCCCc-ceEEE----eCCCHHHHHHHHHHc-----CC--c--ccCcHHHHHhhCCE
Confidence 579999995 9999999999999885543 34655 688877776443333 11 1 25566788899999
Q ss_pred EEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 013619 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (439)
Q Consensus 176 VIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPv 225 (439)
||++ -|| +.+.++.+.++.. .++-+||-+.-.+
T Consensus 66 v~La----vKP------------q~~~~vl~~l~~~-~~~~lvISiaAGv 98 (266)
T COG0345 66 VFLA----VKP------------QDLEEVLSKLKPL-TKDKLVISIAAGV 98 (266)
T ss_pred EEEE----eCh------------HhHHHHHHHhhcc-cCCCEEEEEeCCC
Confidence 9998 455 3445555555532 2344444444433
No 66
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.38 E-value=0.0012 Score=66.12 Aligned_cols=105 Identities=21% Similarity=0.253 Sum_probs=63.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccC----CCCccEEEecCcccccC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF----PLLREVKIGINPYELFE 171 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~----~~~~~v~i~~~~~eal~ 171 (439)
||||+|||+ |.+|..++..|+..+. ++.+ .+++.+.++....+..+... .....+....+..+.++
T Consensus 1 mmkI~iiG~-G~mG~~~a~~L~~~g~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 1 MMKIAVLGA-GSWGTALAIVLARNGH-----DVTL----WARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA 70 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-----EEEE----EECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh
Confidence 579999995 9999999999997653 2555 35665665544332111100 01113445555556889
Q ss_pred CCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 013619 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (439)
Q Consensus 172 dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd 226 (439)
+||+||++.. + +.+.++.+.+..+..++.++|.++|-++
T Consensus 71 ~~D~vi~~v~----~------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 71 DADLILVAVP----S------------QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred CCCEEEEeCC----H------------HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 9999999832 1 1123333344444346778888887654
No 67
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=97.34 E-value=0.00072 Score=67.97 Aligned_cols=143 Identities=19% Similarity=0.181 Sum_probs=80.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHH---HHH-Hhccc-CCC---------CccEE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV---AME-LEDSL-FPL---------LREVK 161 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~---a~D-L~~~~-~~~---------~~~v~ 161 (439)
.+||+|||| |.+|..+|..++..++ ++.| .|++++.++.- +.. |.... ... +..++
T Consensus 3 i~kv~ViGa-G~MG~gIA~~~A~~G~-----~V~l----~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~ 72 (307)
T COG1250 3 IKKVAVIGA-GVMGAGIAAVFALAGY-----DVVL----KDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARIT 72 (307)
T ss_pred ccEEEEEcc-cchhHHHHHHHhhcCC-----ceEE----EeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhcc
Confidence 369999996 9999999999998553 3666 35565544421 111 11110 000 11222
Q ss_pred EecCcccccCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC
Q 013619 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA 241 (439)
Q Consensus 162 i~~~~~eal~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~ 241 (439)
.+.++.+++|||+||=+. .+ |..+=+++-.++.+++.|++ |+.||-..+.-..+.... ..|.
T Consensus 73 -~~~~~~~l~~~DlVIEAv-------~E-------~levK~~vf~~l~~~~~~~a--IlASNTSsl~it~ia~~~-~rpe 134 (307)
T COG1250 73 -PTTDLAALKDADLVIEAV-------VE-------DLELKKQVFAELEALAKPDA--ILASNTSSLSITELAEAL-KRPE 134 (307)
T ss_pred -ccCchhHhccCCEEEEec-------cc-------cHHHHHHHHHHHHhhcCCCc--EEeeccCCCCHHHHHHHh-CCch
Confidence 244667999999998652 12 33444455556666666777 567787653333232333 3344
Q ss_pred Cceecc------------------ccchHHHHHHHHHHHhCCC
Q 013619 242 KNFHAL------------------TRLDENRAKCQLALKAGVF 266 (439)
Q Consensus 242 kvig~g------------------t~LDs~R~~~~lA~~lgv~ 266 (439)
|++|+- |.=++...-..+++++|-.
T Consensus 135 r~iG~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~ 177 (307)
T COG1250 135 RFIGLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKT 177 (307)
T ss_pred hEEEEeccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 554442 4445566667777777733
No 68
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.31 E-value=0.0015 Score=65.94 Aligned_cols=104 Identities=14% Similarity=0.243 Sum_probs=64.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhccc----CCCCccEEEecCccccc-C
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL----FPLLREVKIGINPYELF-E 171 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~----~~~~~~v~i~~~~~eal-~ 171 (439)
|||+|||| |.+|++++..|...+. ++.| ++++.+.++.+..+-.+.. ..+...+.++++..+++ .
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~~g~-----~V~l----~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 70 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSSKKI-----SVNL----WGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSD 70 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC-----eEEE----EecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhC
Confidence 68999996 9999999999998652 3666 3555555554433211111 01112456666666666 5
Q ss_pred CCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHh-hcCCCeEEEEeCCchh
Q 013619 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA-VASRNVKVIVVGNPCN 226 (439)
Q Consensus 172 dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~-~a~p~aivIvvtNPvd 226 (439)
++|+||++. | .+-+.++.+.+.. +..++..|+..+|=.+
T Consensus 71 ~~Dliiiav----k------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~ 110 (326)
T PRK14620 71 NATCIILAV----P------------TQQLRTICQQLQDCHLKKNTPILICSKGIE 110 (326)
T ss_pred CCCEEEEEe----C------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence 899999973 1 2334555555554 4346677787888763
No 69
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.29 E-value=0.0011 Score=70.56 Aligned_cols=123 Identities=13% Similarity=0.129 Sum_probs=70.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCC---------CCccEEEecCc
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP---------LLREVKIGINP 166 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~---------~~~~v~i~~~~ 166 (439)
+|||+||| +|.||..+|..|+..+. + ..+.. +|+++++.+.+-.......-+ ..+..+.+++.
T Consensus 1 ~m~I~ViG-~GyvGl~~A~~lA~~g~-g--~~V~g----vD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~ 72 (473)
T PLN02353 1 MVKICCIG-AGYVGGPTMAVIALKCP-D--IEVVV----VDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDV 72 (473)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCC-C--CeEEE----EECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCH
Confidence 58999999 59999999999997642 1 12333 366666665432111000000 01236677777
Q ss_pred ccccCCCcEEEEeCCcCCCCCC-chhhhHHHHHHHHHHHHHHHHhhcCCCeE-EEEeCCchhHH
Q 013619 167 YELFEDAEWALLIGAKPRGPGM-ERAGLLDINGQIFAEQGKALNAVASRNVK-VIVVGNPCNTN 228 (439)
Q Consensus 167 ~eal~dADiVIitag~~~kpg~-~r~~ll~~N~~ii~~i~~~i~~~a~p~ai-vIvvtNPvd~~ 228 (439)
.+++++||++|++.+.|.++.- .. + -.-+..-+.+.++.|.++..++.+ |+=-|-|..+.
T Consensus 73 ~~~i~~advi~I~V~TP~~~~g~~~-~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt 134 (473)
T PLN02353 73 EKHVAEADIVFVSVNTPTKTRGLGA-G-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (473)
T ss_pred HHHHhcCCEEEEEeCCCCCCCCCcC-C-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChH
Confidence 7789999999999998874321 00 0 001223455666666665323333 22235666543
No 70
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=97.28 E-value=0.0016 Score=69.93 Aligned_cols=74 Identities=18% Similarity=0.241 Sum_probs=47.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcc------c--CCC--CccEEEecC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS------L--FPL--LREVKIGIN 165 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~------~--~~~--~~~v~i~~~ 165 (439)
.+||+|||+ |.+|..+|..|+..+. ++.+ .|++.++++.....+... . .+. ..+++...+
T Consensus 4 i~kIavIG~-G~MG~~iA~~la~~G~-----~V~v----~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~ 73 (495)
T PRK07531 4 IMKAACIGG-GVIGGGWAARFLLAGI-----DVAV----FDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCAS 73 (495)
T ss_pred cCEEEEECc-CHHHHHHHHHHHhCCC-----eEEE----EeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCC
Confidence 358999995 9999999999998764 2655 366666655432111000 0 001 123556666
Q ss_pred cccccCCCcEEEEe
Q 013619 166 PYELFEDAEWALLI 179 (439)
Q Consensus 166 ~~eal~dADiVIit 179 (439)
..+++++||+||.+
T Consensus 74 ~~ea~~~aD~Viea 87 (495)
T PRK07531 74 LAEAVAGADWIQES 87 (495)
T ss_pred HHHHhcCCCEEEEc
Confidence 66789999999986
No 71
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=97.23 E-value=0.002 Score=67.34 Aligned_cols=106 Identities=12% Similarity=0.148 Sum_probs=62.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCC--------------CccEEE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--------------LREVKI 162 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~--------------~~~v~i 162 (439)
|||+||| +|.+|..+|..|+..+. ++.. .|++.++++.+ .....++ ..+++.
T Consensus 1 mkI~vIG-lG~~G~~lA~~La~~G~-----~V~~----~d~~~~~v~~l----~~g~~~~~e~~l~~~~~~~~~~g~l~~ 66 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLADLGH-----EVTG----VDIDQEKVDKL----NKGKSPIYEPGLDELLAKALAAGRLRA 66 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHHhcCC-----eEEE----EECCHHHHHHh----hcCCCCCCCCCHHHHHHHhhhcCCeEE
Confidence 5899999 59999999999997653 2544 36666665543 2211111 123556
Q ss_pred ecCcccccCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeC
Q 013619 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (439)
Q Consensus 163 ~~~~~eal~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvt 222 (439)
+++..+++++||+||++.+.|..... .. +...+.+..+.+.++..++.+|++.|
T Consensus 67 ~~~~~~~~~~advvii~vpt~~~~~~-~~-----d~~~v~~~~~~i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 67 TTDYEDAIRDADVIIICVPTPLKEDG-SP-----DLSYVESAAETIAKHLRKGATVVLES 120 (411)
T ss_pred ECCHHHHHhhCCEEEEEeCCCCCCCC-Cc-----ChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 66556789999999999776654311 11 12334444444544433455555444
No 72
>PLN02688 pyrroline-5-carboxylate reductase
Probab=97.20 E-value=0.0024 Score=62.35 Aligned_cols=98 Identities=19% Similarity=0.268 Sum_probs=59.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEeccc-ccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS-ERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~-d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (439)
|||+||| .|++|.+++..|+..+...+ .+|.+ . +++.++++.. .+. .+.+..+..+.+++||+
T Consensus 1 ~kI~~IG-~G~mG~a~a~~L~~~g~~~~-~~i~v----~~~r~~~~~~~~----~~~------g~~~~~~~~e~~~~aDv 64 (266)
T PLN02688 1 FRVGFIG-AGKMAEAIARGLVASGVVPP-SRIST----ADDSNPARRDVF----QSL------GVKTAASNTEVVKSSDV 64 (266)
T ss_pred CeEEEEC-CcHHHHHHHHHHHHCCCCCc-ceEEE----EeCCCHHHHHHH----HHc------CCEEeCChHHHHhcCCE
Confidence 6899999 59999999999998764332 23444 3 6666655422 211 13445556677899999
Q ss_pred EEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 013619 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (439)
Q Consensus 176 VIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd 226 (439)
||++. .| +.+.++...+..+..++.+||.+++...
T Consensus 65 Vil~v-~~---------------~~~~~vl~~l~~~~~~~~~iIs~~~g~~ 99 (266)
T PLN02688 65 IILAV-KP---------------QVVKDVLTELRPLLSKDKLLVSVAAGIT 99 (266)
T ss_pred EEEEE-Cc---------------HHHHHHHHHHHhhcCCCCEEEEecCCCc
Confidence 99984 12 2233333344333235666666666553
No 73
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.18 E-value=0.0028 Score=62.67 Aligned_cols=68 Identities=32% Similarity=0.347 Sum_probs=45.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccch-hhHHHHHHHHhcccCCCCccEEEecCcccccCCCcE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL-QALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~-e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (439)
|||+|||+ |++|.+++..|+..+...+ ..|.+ ++++. ++++..+.++ .+.+..+..+.+++||+
T Consensus 4 mkI~~IG~-G~mG~aia~~l~~~g~~~~-~~v~v----~~r~~~~~~~~l~~~~---------g~~~~~~~~e~~~~aDv 68 (279)
T PRK07679 4 QNISFLGA-GSIAEAIIGGLLHANVVKG-EQITV----SNRSNETRLQELHQKY---------GVKGTHNKKELLTDANI 68 (279)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCc-ceEEE----ECCCCHHHHHHHHHhc---------CceEeCCHHHHHhcCCE
Confidence 69999995 9999999999998764332 23444 35543 3444333221 12345556677899999
Q ss_pred EEEe
Q 013619 176 ALLI 179 (439)
Q Consensus 176 VIit 179 (439)
||++
T Consensus 69 Vila 72 (279)
T PRK07679 69 LFLA 72 (279)
T ss_pred EEEE
Confidence 9997
No 74
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.17 E-value=0.0016 Score=72.85 Aligned_cols=121 Identities=20% Similarity=0.268 Sum_probs=68.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHH----Hhccc----C-C-----CCccEEE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME----LEDSL----F-P-----LLREVKI 162 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~D----L~~~~----~-~-----~~~~v~i 162 (439)
.||+|||| |.+|..+|..++..+. ++.| +|++.+.++.-... +.... . . ...+++.
T Consensus 314 ~~v~ViGa-G~mG~gIA~~~a~~G~-----~V~l----~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~ 383 (715)
T PRK11730 314 KQAAVLGA-GIMGGGIAYQSASKGV-----PVIM----KDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP 383 (715)
T ss_pred ceEEEECC-chhHHHHHHHHHhCCC-----eEEE----EeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence 58999996 9999999999998874 3666 35565655421111 11100 0 0 1134555
Q ss_pred ecCcccccCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHH-HHHHHHHCCCCCC
Q 013619 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN-ALICLKNAPSIPA 241 (439)
Q Consensus 163 ~~~~~eal~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~-t~i~~k~s~~~p~ 241 (439)
+ .++++++|||+||=+. + | +.++=+++-..+.+++.|++ |+.||-...- +.++ ... ..|.
T Consensus 384 ~-~~~~~~~~aDlViEav--~-----E-------~l~~K~~vf~~l~~~~~~~~--ilasNTSsl~i~~la-~~~-~~p~ 444 (715)
T PRK11730 384 T-LDYAGFERVDVVVEAV--V-----E-------NPKVKAAVLAEVEQKVREDT--ILASNTSTISISLLA-KAL-KRPE 444 (715)
T ss_pred e-CCHHHhcCCCEEEecc--c-----C-------cHHHHHHHHHHHHhhCCCCc--EEEEcCCCCCHHHHH-hhc-CCCc
Confidence 4 4668999999998652 1 1 22333444455566655665 4588876533 3333 333 3444
Q ss_pred Cceec
Q 013619 242 KNFHA 246 (439)
Q Consensus 242 kvig~ 246 (439)
|++|+
T Consensus 445 r~~g~ 449 (715)
T PRK11730 445 NFCGM 449 (715)
T ss_pred cEEEE
Confidence 55553
No 75
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=97.16 E-value=0.0015 Score=70.18 Aligned_cols=75 Identities=13% Similarity=0.113 Sum_probs=47.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhc---c-c-CC---------CCcc
Q 013619 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED---S-L-FP---------LLRE 159 (439)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~---~-~-~~---------~~~~ 159 (439)
.+..||+|||+ |.+|..+|..++..+. ++.+ .|++.+.++.....+.+ . . .. ...+
T Consensus 5 ~~i~~V~VIGa-G~MG~gIA~~la~aG~-----~V~l----~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~ 74 (507)
T PRK08268 5 PSIATVAVIGA-GAMGAGIAQVAAQAGH-----TVLL----YDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALAR 74 (507)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCC-----eEEE----EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhC
Confidence 44568999995 9999999999998764 3666 36666666532111110 0 0 00 0123
Q ss_pred EEEecCcccccCCCcEEEEe
Q 013619 160 VKIGINPYELFEDAEWALLI 179 (439)
Q Consensus 160 v~i~~~~~eal~dADiVIit 179 (439)
++.+. +++++++||+||-+
T Consensus 75 i~~~~-~~~~~~~aDlViEa 93 (507)
T PRK08268 75 LRPVE-ALADLADCDLVVEA 93 (507)
T ss_pred eEEeC-CHHHhCCCCEEEEc
Confidence 55554 56789999999987
No 76
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.13 E-value=0.0018 Score=72.38 Aligned_cols=104 Identities=13% Similarity=0.167 Sum_probs=62.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHH-hcCCCCCCCceEEEecccccchhhHHHH---HHHHhccc------C-----CCCccE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLA-AGEVLGPDQPIALKLLGSERSLQALEGV---AMELEDSL------F-----PLLREV 160 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~-~~~l~~~~~~I~L~l~~~d~~~e~l~g~---a~DL~~~~------~-----~~~~~v 160 (439)
..||+|||| |.+|..+|..++ ..++ ++.|+ |++.+.++.- +.+..+.. . ....++
T Consensus 309 i~~v~ViGa-G~mG~giA~~~a~~~G~-----~V~l~----d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 378 (708)
T PRK11154 309 VNKVGVLGG-GLMGGGIAYVTATKAGL-----PVRIK----DINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALI 378 (708)
T ss_pred ccEEEEECC-chhhHHHHHHHHHHcCC-----eEEEE----eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcE
Confidence 368999996 999999999988 6564 36663 4554544321 11111110 0 011356
Q ss_pred EEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 013619 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (439)
Q Consensus 161 ~i~~~~~eal~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd 226 (439)
+.++ ++++++|||+||=+. -.|.++=+++-..+.+++.|+++ +.||-..
T Consensus 379 ~~~~-~~~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~i--lasnTS~ 427 (708)
T PRK11154 379 SGTT-DYRGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHTI--FASNTSS 427 (708)
T ss_pred EEeC-ChHHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCcE--EEECCCC
Confidence 6654 568999999998552 12334445555667777667764 4677665
No 77
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=97.12 E-value=0.0018 Score=59.00 Aligned_cols=64 Identities=23% Similarity=0.333 Sum_probs=45.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (439)
|+||+||| .|.+|+.++..|+..+. ++.. .|++.++++.... . ......+..+.+++||+
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~~~g~-----~v~~----~d~~~~~~~~~~~----~------g~~~~~s~~e~~~~~dv 60 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLAKAGY-----EVTV----YDRSPEKAEALAE----A------GAEVADSPAEAAEQADV 60 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTT-----EEEE----EESSHHHHHHHHH----T------TEEEESSHHHHHHHBSE
T ss_pred CCEEEEEc-hHHHHHHHHHHHHhcCC-----eEEe----eccchhhhhhhHH----h------hhhhhhhhhhHhhcccc
Confidence 68999999 59999999999998763 3544 4677666654422 2 14566778899999999
Q ss_pred EEEe
Q 013619 176 ALLI 179 (439)
Q Consensus 176 VIit 179 (439)
||++
T Consensus 61 vi~~ 64 (163)
T PF03446_consen 61 VILC 64 (163)
T ss_dssp EEE-
T ss_pred eEee
Confidence 9987
No 78
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.09 E-value=0.0046 Score=63.31 Aligned_cols=108 Identities=17% Similarity=0.168 Sum_probs=63.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCC---CCceEEEeccccc-chhhHHHHHHHHhcccC----CCCccEEEecCcccc
Q 013619 98 NIAVSGAAGMIANHLLFKLAAGEVLGP---DQPIALKLLGSER-SLQALEGVAMELEDSLF----PLLREVKIGINPYEL 169 (439)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~---~~~I~L~l~~~d~-~~e~l~g~a~DL~~~~~----~~~~~v~i~~~~~ea 169 (439)
||+|||| |+.|.++|..|...+...+ +.++.|+..+.++ +++..+.+-.+.....+ .+..+++++++..++
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea 79 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA 79 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence 7999995 9999999999998663221 1357775432111 22222212111111110 112357777877889
Q ss_pred cCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeC
Q 013619 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (439)
Q Consensus 170 l~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvt 222 (439)
+++||+||++ .| .+.++++++.|..+-.++..+|.++
T Consensus 80 l~~ADiIIlA--VP--------------s~~i~~vl~~l~~~l~~~~~iVs~t 116 (342)
T TIGR03376 80 AKGADILVFV--IP--------------HQFLEGICKQLKGHVKPNARAISCI 116 (342)
T ss_pred HhcCCEEEEE--CC--------------hHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 9999999987 22 3556677777766544455566554
No 79
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.09 E-value=0.0021 Score=72.22 Aligned_cols=103 Identities=16% Similarity=0.160 Sum_probs=62.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHH---H-HhcccC-C---------CCccEEE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM---E-LEDSLF-P---------LLREVKI 162 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~---D-L~~~~~-~---------~~~~v~i 162 (439)
.||+|||| |.+|..+|..++..++ ++.| +|++.+.++.-.. + +..... . ...+++.
T Consensus 336 ~~v~ViGa-G~MG~gIA~~~a~~G~-----~V~l----~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~ 405 (737)
T TIGR02441 336 KTLAVLGA-GLMGAGIAQVSVDKGL-----KTVL----KDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTP 405 (737)
T ss_pred cEEEEECC-CHhHHHHHHHHHhCCC-----cEEE----ecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE
Confidence 58999996 9999999999998774 3666 3556555543111 1 111100 0 1124555
Q ss_pred ecCcccccCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 013619 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (439)
Q Consensus 163 ~~~~~eal~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd 226 (439)
+ .++++++|||+||=+. -.|..+=+++-..+.+++.|+++ +.||-..
T Consensus 406 ~-~~~~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~i--lasNTSs 452 (737)
T TIGR02441 406 T-LDYSGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHCI--IASNTSA 452 (737)
T ss_pred e-CCHHHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCcE--EEEcCCC
Confidence 4 4678999999998541 12233444455556666556764 4677665
No 80
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.07 E-value=0.0051 Score=63.52 Aligned_cols=108 Identities=12% Similarity=0.120 Sum_probs=67.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcCC----CCCCCceEEEecccccchhhHHHHHHHHhccc--C------CCCccE
Q 013619 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEV----LGPDQPIALKLLGSERSLQALEGVAMELEDSL--F------PLLREV 160 (439)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l----~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~--~------~~~~~v 160 (439)
..+.+||+|||| |+-|+++|..|...+. |+ .++.|+..+.+.+. +.++.++++.- . .+..++
T Consensus 8 ~~~~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~--~~V~lw~~~~~~~~---~~~~~~in~~~~N~~ylp~~~Lp~ni 81 (365)
T PTZ00345 8 RCGPLKVSVIGS-GNWGSAISKVVGENTQRNYIFH--NEVRMWVLEEIVEG---EKLSDIINTKHENVKYLPGIKLPDNI 81 (365)
T ss_pred ccCCCeEEEECC-CHHHHHHHHHHHhcCCcccCCC--CeEEEEEecccccc---hHHHHHHHhcCCCcccCCCCcCCCce
Confidence 345689999995 9999999999997652 22 24777543322111 12344444321 0 123467
Q ss_pred EEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHh--hcCCCeEEEEeC
Q 013619 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA--VASRNVKVIVVG 222 (439)
Q Consensus 161 ~i~~~~~eal~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~--~a~p~aivIvvt 222 (439)
.++++..+++++||+||++. | .+.++++++.++. +..++.++|.++
T Consensus 82 ~~tsdl~eav~~aDiIvlAV--P--------------sq~l~~vl~~l~~~~~l~~~~~iIS~a 129 (365)
T PTZ00345 82 VAVSDLKEAVEDADLLIFVI--P--------------HQFLESVLSQIKENNNLKKHARAISLT 129 (365)
T ss_pred EEecCHHHHHhcCCEEEEEc--C--------------hHHHHHHHHHhccccccCCCCEEEEEe
Confidence 78888888999999999872 1 3567777777775 323344555553
No 81
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.07 E-value=0.0053 Score=59.09 Aligned_cols=70 Identities=19% Similarity=0.180 Sum_probs=44.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEeccccc-chhhHHHHHHHHhcccCCCCccEEEecCcccccCCC
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~-~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (439)
+.+||+|||+ |++|.+++..|+..+.... +.+.+ .++ +.++++..+..+ .+..+.+..+.++++
T Consensus 3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~-~~i~~----~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 67 (245)
T PRK07634 3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYI-EEIIV----SNRSNVEKLDQLQARY---------NVSTTTDWKQHVTSV 67 (245)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhCCCCCc-CeEEE----ECCCCHHHHHHHHHHc---------CcEEeCChHHHHhcC
Confidence 4579999995 9999999999987653211 11333 233 345555433221 123445666778999
Q ss_pred cEEEEe
Q 013619 174 EWALLI 179 (439)
Q Consensus 174 DiVIit 179 (439)
|+||++
T Consensus 68 DiViia 73 (245)
T PRK07634 68 DTIVLA 73 (245)
T ss_pred CEEEEe
Confidence 999997
No 82
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.06 E-value=0.0014 Score=57.60 Aligned_cols=103 Identities=20% Similarity=0.211 Sum_probs=52.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCC
Q 013619 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (439)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (439)
...+||+|||| |+||.+|+..|...+. +|.- + ..++.+..+..+..+. ...+ .+..+.+.+|
T Consensus 8 ~~~l~I~iIGa-GrVG~~La~aL~~ag~-----~v~~-v--~srs~~sa~~a~~~~~--------~~~~-~~~~~~~~~a 69 (127)
T PF10727_consen 8 AARLKIGIIGA-GRVGTALARALARAGH-----EVVG-V--YSRSPASAERAAAFIG--------AGAI-LDLEEILRDA 69 (127)
T ss_dssp ----EEEEECT-SCCCCHHHHHHHHTTS-----EEEE-E--SSCHH-HHHHHHC--T--------T------TTGGGCC-
T ss_pred CCccEEEEECC-CHHHHHHHHHHHHCCC-----eEEE-E--EeCCcccccccccccc--------cccc-cccccccccC
Confidence 45689999996 9999999999998763 2322 1 3455444332222111 1222 3466889999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhc-CCCeEEEEeCC---chhHHHH
Q 013619 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVA-SRNVKVIVVGN---PCNTNAL 230 (439)
Q Consensus 174 DiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a-~p~aivIvvtN---Pvd~~t~ 230 (439)
|++|++... ..+.+++++|..+. ...+.+++-+. +++++..
T Consensus 70 Dlv~iavpD----------------daI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p 114 (127)
T PF10727_consen 70 DLVFIAVPD----------------DAIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAP 114 (127)
T ss_dssp SEEEE-S-C----------------CHHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHH
T ss_pred CEEEEEech----------------HHHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhh
Confidence 999998421 23666777777641 12344555543 3455554
No 83
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.05 E-value=0.0031 Score=62.61 Aligned_cols=106 Identities=15% Similarity=0.083 Sum_probs=59.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHH-HhcccCCCC-c--cEEEecCcccccCC
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME-LEDSLFPLL-R--EVKIGINPYELFED 172 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~D-L~~~~~~~~-~--~v~i~~~~~eal~d 172 (439)
|||+|||+ |.+|..++..|...+. .+.+ +++ .++++....+ +. ...... . .....++..+..++
T Consensus 1 mkI~IiG~-G~iG~~~a~~L~~~g~-----~V~~----~~r-~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~ 68 (305)
T PRK12921 1 MRIAVVGA-GAVGGTFGGRLLEAGR-----DVTF----LVR-PKRAKALRERGLV-IRSDHGDAVVPGPVITDPEELTGP 68 (305)
T ss_pred CeEEEECC-CHHHHHHHHHHHHCCC-----ceEE----Eec-HHHHHHHHhCCeE-EEeCCCeEEecceeecCHHHccCC
Confidence 69999995 9999999999998652 3655 344 4454433210 00 000000 0 11122333344589
Q ss_pred CcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHH
Q 013619 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (439)
Q Consensus 173 ADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~ 230 (439)
+|+||++.-.+ -+.++.+.+..+..++.+||.+.|.++....
T Consensus 69 ~d~vilavk~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~ 110 (305)
T PRK12921 69 FDLVILAVKAY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQ 110 (305)
T ss_pred CCEEEEEeccc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCChHHH
Confidence 99999983211 1233334444443467788889999865443
No 84
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=97.03 E-value=0.0043 Score=67.35 Aligned_cols=120 Identities=14% Similarity=0.066 Sum_probs=69.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhccc---CC--CCccEEE-e--c
Q 013619 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL---FP--LLREVKI-G--I 164 (439)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~---~~--~~~~v~i-~--~ 164 (439)
+++...|.|+||+|.||.+++..|+..+. .|.+ .+++.++++....++.+.. .. ...++.+ . .
T Consensus 77 ~~~gKvVLVTGATGgIG~aLAr~LLk~G~-----~Vva----l~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDL 147 (576)
T PLN03209 77 TKDEDLAFVAGATGKVGSRTVRELLKLGF-----RVRA----GVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDL 147 (576)
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHhhhhccccccccccCceEEEEecC
Confidence 34456899999999999999999998663 2444 3566666665544443210 00 0011211 1 1
Q ss_pred Cc----ccccCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 165 NP----YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 165 ~~----~eal~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
.+ .+++.++|+||.++|.......+-...+..|..-...+++.+.+. +- +.||+++-
T Consensus 148 tD~esI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~a-gV-gRIV~VSS 208 (576)
T PLN03209 148 EKPDQIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVA-KV-NHFILVTS 208 (576)
T ss_pred CCHHHHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHh-CC-CEEEEEcc
Confidence 12 235789999999988653322222223455666677777777664 32 35555553
No 85
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.03 E-value=0.0038 Score=62.66 Aligned_cols=75 Identities=17% Similarity=0.233 Sum_probs=47.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHH-------HHhcccC-------CCCccEE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM-------ELEDSLF-------PLLREVK 161 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~-------DL~~~~~-------~~~~~v~ 161 (439)
++||+|||+ |.+|..++..|+..+. ++.+ .|++.+.++.... .+.+... ....+++
T Consensus 2 ~~~V~VIG~-G~mG~~iA~~la~~G~-----~V~v----~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~ 71 (308)
T PRK06129 2 MGSVAIIGA-GLIGRAWAIVFARAGH-----EVRL----WDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIR 71 (308)
T ss_pred CcEEEEECc-cHHHHHHHHHHHHCCC-----eeEE----EeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeE
Confidence 468999995 9999999999998763 3655 3566555443111 1111100 0112356
Q ss_pred EecCcccccCCCcEEEEeC
Q 013619 162 IGINPYELFEDAEWALLIG 180 (439)
Q Consensus 162 i~~~~~eal~dADiVIita 180 (439)
.+.+..+++++||+|+.+.
T Consensus 72 ~~~~~~~a~~~ad~Vi~av 90 (308)
T PRK06129 72 VTDSLADAVADADYVQESA 90 (308)
T ss_pred EECcHHHhhCCCCEEEECC
Confidence 6666667899999999873
No 86
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.01 E-value=0.0036 Score=61.97 Aligned_cols=104 Identities=17% Similarity=0.175 Sum_probs=59.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCC-CccEE---EecCcccccCC
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVK---IGINPYELFED 172 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~-~~~v~---i~~~~~eal~d 172 (439)
|||+|||+ |.+|..++..|...+. ++.+ ++++.+.++....+ .. .. ..... ...++.+.+++
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~~g~-----~V~~----~~r~~~~~~~~~~~---g~-~~~~~~~~~~~~~~~~~~~~~~ 66 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQAGH-----DVTL----VARRGAHLDALNEN---GL-RLEDGEITVPVLAADDPAELGP 66 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-----eEEE----EECChHHHHHHHHc---CC-cccCCceeecccCCCChhHcCC
Confidence 68999995 9999999999997652 3666 34544554433211 11 11 11111 11233344589
Q ss_pred CcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHH
Q 013619 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (439)
Q Consensus 173 ADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~ 230 (439)
+|+||++.. +.. +.++.+.+..+-.++..|+...|.++..-.
T Consensus 67 ~d~vila~k----~~~------------~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~ 108 (304)
T PRK06522 67 QDLVILAVK----AYQ------------LPAALPSLAPLLGPDTPVLFLQNGVGHLEE 108 (304)
T ss_pred CCEEEEecc----ccc------------HHHHHHHHhhhcCCCCEEEEecCCCCcHHH
Confidence 999999832 211 223333344433466788899998865443
No 87
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.01 E-value=0.0038 Score=63.09 Aligned_cols=75 Identities=27% Similarity=0.308 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhccc----CCCCccEEEecCccccc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL----FPLLREVKIGINPYELF 170 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~----~~~~~~v~i~~~~~eal 170 (439)
.+|||+|||+ |.+|..++..|+..+. ++.+ .+++.++++.....-.... .....++..+.+..+++
T Consensus 3 ~~m~I~iIG~-G~mG~~ia~~L~~~G~-----~V~~----~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~ 72 (328)
T PRK14618 3 HGMRVAVLGA-GAWGTALAVLAASKGV-----PVRL----WARRPEFAAALAAERENREYLPGVALPAELYPTADPEEAL 72 (328)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHH
Confidence 4689999995 9999999999997652 3555 3566565554432211100 01112255566666788
Q ss_pred CCCcEEEEe
Q 013619 171 EDAEWALLI 179 (439)
Q Consensus 171 ~dADiVIit 179 (439)
++||+||++
T Consensus 73 ~~aD~Vi~~ 81 (328)
T PRK14618 73 AGADFAVVA 81 (328)
T ss_pred cCCCEEEEE
Confidence 999999987
No 88
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=97.01 E-value=0.0019 Score=69.36 Aligned_cols=74 Identities=19% Similarity=0.178 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHH----Hhccc-CC---------CCccE
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME----LEDSL-FP---------LLREV 160 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~D----L~~~~-~~---------~~~~v 160 (439)
.-.||+|||+ |.+|..+|..++..+. ++.+ .|++.+.++..... +.... .. ...++
T Consensus 4 ~~~kV~VIGa-G~MG~gIA~~la~aG~-----~V~l----~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i 73 (503)
T TIGR02279 4 NVVTVAVIGA-GAMGAGIAQVAASAGH-----QVLL----YDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRL 73 (503)
T ss_pred CccEEEEECc-CHHHHHHHHHHHhCCC-----eEEE----EeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhcc
Confidence 3468999995 9999999999998774 3666 36666666532111 11110 00 11235
Q ss_pred EEecCcccccCCCcEEEEe
Q 013619 161 KIGINPYELFEDAEWALLI 179 (439)
Q Consensus 161 ~i~~~~~eal~dADiVIit 179 (439)
+.++ +++++++||+||-+
T Consensus 74 ~~~~-~~~~l~~aDlVIEa 91 (503)
T TIGR02279 74 IPVT-DLHALADAGLVIEA 91 (503)
T ss_pred EEeC-CHHHhCCCCEEEEc
Confidence 5554 56789999999987
No 89
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.00 E-value=0.0033 Score=70.23 Aligned_cols=104 Identities=13% Similarity=0.214 Sum_probs=60.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHh-cCCCCCCCceEEEecccccchhhHHHHHHH----HhcccC-C---------CCccE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAME----LEDSLF-P---------LLREV 160 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~-~~l~~~~~~I~L~l~~~d~~~e~l~g~a~D----L~~~~~-~---------~~~~v 160 (439)
..||+|||| |.+|..+|..++. .+. ++.|+ |++++.++.-... |..... . ...++
T Consensus 304 i~~v~ViGa-G~mG~~iA~~~a~~~G~-----~V~l~----d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 373 (699)
T TIGR02440 304 IKKVGILGG-GLMGGGIASVTATKAGI-----PVRIK----DINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALI 373 (699)
T ss_pred ccEEEEECC-cHHHHHHHHHHHHHcCC-----eEEEE----eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCe
Confidence 358999996 9999999998874 553 36663 4555544422111 111100 0 01345
Q ss_pred EEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 013619 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (439)
Q Consensus 161 ~i~~~~~eal~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd 226 (439)
+.++ ++++++|||+||=+. | | +.++=+++-.++.+++.+++ |+.||-..
T Consensus 374 ~~~~-~~~~~~~adlViEav--~-----E-------~l~~K~~v~~~l~~~~~~~~--ilasnTS~ 422 (699)
T TIGR02440 374 TGTT-DYRGFKDVDIVIEAV--F-----E-------DLALKHQMVKDIEQECAAHT--IFASNTSS 422 (699)
T ss_pred EEeC-ChHHhccCCEEEEec--c-----c-------cHHHHHHHHHHHHhhCCCCc--EEEeCCCC
Confidence 5554 568999999998652 1 1 23344445555666655565 45677765
No 90
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=96.99 E-value=0.0032 Score=70.51 Aligned_cols=104 Identities=18% Similarity=0.280 Sum_probs=62.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHH---HHHH-hccc-CC---------CCccEE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV---AMEL-EDSL-FP---------LLREVK 161 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~---a~DL-~~~~-~~---------~~~~v~ 161 (439)
..||+|||| |.+|..+|..++..++ ++.| .|++.+.++.- +.++ .... .. ...+++
T Consensus 313 i~~v~ViGa-G~mG~gIA~~~a~~G~-----~V~l----~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 382 (714)
T TIGR02437 313 VKQAAVLGA-GIMGGGIAYQSASKGT-----PIVM----KDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGIT 382 (714)
T ss_pred cceEEEECC-chHHHHHHHHHHhCCC-----eEEE----EeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeE
Confidence 358999996 9999999999998774 3666 35555554421 1111 1100 00 112455
Q ss_pred EecCcccccCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 013619 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (439)
Q Consensus 162 i~~~~~eal~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd 226 (439)
.++ ++++++|||+||=+. + | +..+=+++-.++.+++.|++ |+.||-..
T Consensus 383 ~~~-~~~~~~~aDlViEav--~-----E-------~l~~K~~vf~~l~~~~~~~~--ilasnTS~ 430 (714)
T TIGR02437 383 PTL-SYAGFDNVDIVVEAV--V-----E-------NPKVKAAVLAEVEQHVREDA--ILASNTST 430 (714)
T ss_pred EeC-CHHHhcCCCEEEEcC--c-----c-------cHHHHHHHHHHHHhhCCCCc--EEEECCCC
Confidence 544 668899999999652 1 1 22333444455666655666 45788765
No 91
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=96.98 E-value=0.0048 Score=64.24 Aligned_cols=118 Identities=11% Similarity=0.126 Sum_probs=63.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCC--------CCccEEEecCccc
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP--------LLREVKIGINPYE 168 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~--------~~~~v~i~~~~~e 168 (439)
|||+||| +|.||..+|..++. + + ++.. +|+++++++..........-+ ...+++.+++..+
T Consensus 1 mkI~VIG-lGyvGl~~A~~lA~-G-~----~Vig----vD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~ 69 (388)
T PRK15057 1 MKITISG-TGYVGLSNGLLIAQ-N-H----EVVA----LDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNE 69 (388)
T ss_pred CEEEEEC-CCHHHHHHHHHHHh-C-C----cEEE----EECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhh
Confidence 6999999 59999999977765 3 2 2544 467767765443211110000 0113444555677
Q ss_pred ccCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEE-eCCchhHHHHH
Q 013619 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIV-VGNPCNTNALI 231 (439)
Q Consensus 169 al~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIv-vtNPvd~~t~i 231 (439)
+.++||+||++.+.|........ +...+.+.++.|.+. .++.+||+ -|=|..+.-.+
T Consensus 70 ~~~~ad~vii~Vpt~~~~k~~~~-----dl~~v~~v~~~i~~~-~~g~lVV~~STv~pgtt~~l 127 (388)
T PRK15057 70 AYRDADYVIIATPTDYDPKTNYF-----NTSSVESVIKDVVEI-NPYAVMVIKSTVPVGFTAAM 127 (388)
T ss_pred hhcCCCEEEEeCCCCCccCCCCc-----ChHHHHHHHHHHHhc-CCCCEEEEeeecCCchHHHH
Confidence 88999999998766532111111 123334444444443 45555443 34555544443
No 92
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.97 E-value=0.0051 Score=60.11 Aligned_cols=97 Identities=23% Similarity=0.265 Sum_probs=60.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (439)
||||+|||+ |.+|..++..|...+.. . ..+.+ ++++.++++.....+ .+.+..+..+.+.+||+
T Consensus 2 mm~I~iIG~-G~mG~~la~~l~~~g~~-~-~~v~v----~~r~~~~~~~~~~~~---------g~~~~~~~~~~~~~adv 65 (267)
T PRK11880 2 MKKIGFIGG-GNMASAIIGGLLASGVP-A-KDIIV----SDPSPEKRAALAEEY---------GVRAATDNQEAAQEADV 65 (267)
T ss_pred CCEEEEEec-hHHHHHHHHHHHhCCCC-c-ceEEE----EcCCHHHHHHHHHhc---------CCeecCChHHHHhcCCE
Confidence 579999995 99999999999877631 1 22444 466666655332221 12334455567889999
Q ss_pred EEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 013619 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (439)
Q Consensus 176 VIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd 226 (439)
||++. +| ..+.++.+.+..+. +..|+.++|-+.
T Consensus 66 Vil~v----~~------------~~~~~v~~~l~~~~--~~~vvs~~~gi~ 98 (267)
T PRK11880 66 VVLAV----KP------------QVMEEVLSELKGQL--DKLVVSIAAGVT 98 (267)
T ss_pred EEEEc----CH------------HHHHHHHHHHHhhc--CCEEEEecCCCC
Confidence 99973 11 33445555555441 456777777653
No 93
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.95 E-value=0.0076 Score=59.70 Aligned_cols=71 Identities=25% Similarity=0.341 Sum_probs=44.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccc-hhhHHHHHHHHhcccCCCCccEEEecCcccccCCCc
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-LQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~-~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (439)
|+||+|||+ |++|.+++..|...+.+.. ..|.+ ++++ .++++.. ... + ..+.++.+..+.++++|
T Consensus 1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~-~~V~~----~~r~~~~~~~~l----~~~---~-~~~~~~~~~~e~~~~aD 66 (277)
T PRK06928 1 MEKIGFIGY-GSMADMIATKLLETEVATP-EEIIL----YSSSKNEHFNQL----YDK---Y-PTVELADNEAEIFTKCD 66 (277)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCCCc-ccEEE----EeCCcHHHHHHH----HHH---c-CCeEEeCCHHHHHhhCC
Confidence 579999995 9999999999998764322 23544 2332 2333322 111 1 12344555667789999
Q ss_pred EEEEeC
Q 013619 175 WALLIG 180 (439)
Q Consensus 175 iVIita 180 (439)
+||++.
T Consensus 67 vVilav 72 (277)
T PRK06928 67 HSFICV 72 (277)
T ss_pred EEEEec
Confidence 999873
No 94
>PRK08655 prephenate dehydrogenase; Provisional
Probab=96.91 E-value=0.0098 Score=62.85 Aligned_cols=66 Identities=18% Similarity=0.233 Sum_probs=45.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (439)
|||+||||.|.+|..++..|...+. .+.+ .+++.+.+...+.++. +....+..+++.+||+|
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~-----~V~v----~~r~~~~~~~~a~~~g---------v~~~~~~~e~~~~aDvV 62 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF-----EVIV----TGRDPKKGKEVAKELG---------VEYANDNIDAAKDADIV 62 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC-----EEEE----EECChHHHHHHHHHcC---------CeeccCHHHHhccCCEE
Confidence 6899998669999999999987653 2544 3565555443433321 22344556788999999
Q ss_pred EEeC
Q 013619 177 LLIG 180 (439)
Q Consensus 177 Iita 180 (439)
|++.
T Consensus 63 Ilav 66 (437)
T PRK08655 63 IISV 66 (437)
T ss_pred EEec
Confidence 9974
No 95
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.89 E-value=0.0051 Score=62.24 Aligned_cols=111 Identities=20% Similarity=0.216 Sum_probs=75.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcc--cCCCC------ccEEEecCcc
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS--LFPLL------REVKIGINPY 167 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~--~~~~~------~~v~i~~~~~ 167 (439)
++||+|+|| |+=|++||..|+..+ .++.|+. ++++ ++.||... -..++ .++..++|..
T Consensus 1 ~~kI~ViGa-GswGTALA~~la~ng-----~~V~lw~----r~~~----~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~ 66 (329)
T COG0240 1 MMKIAVIGA-GSWGTALAKVLARNG-----HEVRLWG----RDEE----IVAEINETRENPKYLPGILLPPNLKATTDLA 66 (329)
T ss_pred CceEEEEcC-ChHHHHHHHHHHhcC-----CeeEEEe----cCHH----HHHHHHhcCcCccccCCccCCcccccccCHH
Confidence 579999996 999999999999876 2366753 3333 33334332 11122 3577788999
Q ss_pred cccCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCC-----chhHHHHHHHHHC
Q 013619 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN-----PCNTNALICLKNA 236 (439)
Q Consensus 168 eal~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtN-----Pvd~~t~i~~k~s 236 (439)
+++++||+||+.. | .+.+++++++++.+-.++.+++.++. ....++.++.+.-
T Consensus 67 ~a~~~ad~iv~av--P--------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l 124 (329)
T COG0240 67 EALDGADIIVIAV--P--------------SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEEL 124 (329)
T ss_pred HHHhcCCEEEEEC--C--------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHc
Confidence 9999999999972 2 36677777777655456777777763 3456666666554
No 96
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=96.86 E-value=0.011 Score=62.55 Aligned_cols=113 Identities=12% Similarity=0.098 Sum_probs=68.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEe--cCcccccC
Q 013619 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFE 171 (439)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~--~~~~eal~ 171 (439)
++.|||.|+||+|+||++|+..|+..+. +|.. + |+...........+. . ..++... .-....+.
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~-----~V~~--l--dr~~~~~~~~~~~~~----~-~~~~~~~~~Di~~~~~~ 183 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRGD-----EVIV--I--DNFFTGRKENLVHLF----G-NPRFELIRHDVVEPILL 183 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCCC-----EEEE--E--eCCCCccHhHhhhhc----c-CCceEEEECcccccccc
Confidence 4568999999999999999999998752 2433 1 221111010011111 0 0112211 11234577
Q ss_pred CCcEEEEeCCcCC--CCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 172 DAEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 172 dADiVIitag~~~--kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
++|+||.+|+... ....+..+.+..|+.-...+.+.+++. + ..+|.++.
T Consensus 184 ~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~-g--~r~V~~SS 234 (436)
T PLN02166 184 EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-G--ARFLLTST 234 (436)
T ss_pred CCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHh-C--CEEEEECc
Confidence 8999999987532 122345567889999999999988885 3 35666654
No 97
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=96.83 E-value=0.003 Score=65.02 Aligned_cols=129 Identities=18% Similarity=0.218 Sum_probs=73.2
Q ss_pred CcceeeEEeecccchHHHhhccCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcc
Q 013619 73 DCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS 152 (439)
Q Consensus 73 ~~~gv~~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~ 152 (439)
|.||-|++--. ++++ .+..+.|||.|+||+|+||++++..|...+. +|.. .++..... +...
T Consensus 1 ~~~~~~~~~~~-~~~~--~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~-----~V~~----v~r~~~~~------~~~~ 62 (370)
T PLN02695 1 ESYGAYTLAEL-EREP--YWPSEKLRICITGAGGFIASHIARRLKAEGH-----YIIA----SDWKKNEH------MSED 62 (370)
T ss_pred CCccccchhhc-CCCC--CCCCCCCEEEEECCccHHHHHHHHHHHhCCC-----EEEE----EEeccccc------cccc
Confidence 46888877543 2222 2566778999999999999999999998652 2433 23321110 0000
Q ss_pred cCCCCccEEE---e--cCcccccCCCcEEEEeCCcCCCCCC---chhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 153 LFPLLREVKI---G--INPYELFEDAEWALLIGAKPRGPGM---ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 153 ~~~~~~~v~i---~--~~~~eal~dADiVIitag~~~kpg~---~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
.+...+.. . ....+.++++|+||.+|+.....+. .....+..|......+.+.+.+. +.. .+|.++.
T Consensus 63 --~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~-~vk-~~V~~SS 137 (370)
T PLN02695 63 --MFCHEFHLVDLRVMENCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARIN-GVK-RFFYASS 137 (370)
T ss_pred --cccceEEECCCCCHHHHHHHHhCCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHh-CCC-EEEEeCc
Confidence 00001111 1 1112346789999999864321111 22334667888888888888775 333 4555544
No 98
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=96.81 E-value=0.02 Score=56.50 Aligned_cols=117 Identities=20% Similarity=0.093 Sum_probs=77.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEE-ecC-------
Q 013619 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN------- 165 (439)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i-~~~------- 165 (439)
.++..+.|+||++.||..+|..|+.++. .+.| +.+++++|+.++.+|++.. ...+.+ ..|
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-----~liL----vaR~~~kL~~la~~l~~~~---~v~v~vi~~DLs~~~~~ 71 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY-----NLIL----VARREDKLEALAKELEDKT---GVEVEVIPADLSDPEAL 71 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCcHHHHHHHHHHHHHhh---CceEEEEECcCCChhHH
Confidence 3456899999999999999999998873 3555 6899999999999998753 112222 111
Q ss_pred ------cccccCCCcEEEEeCCcCC------CCCCchhhhHHHHHHH----HHHHHHHHHhhcCCCeEEEEeCCc
Q 013619 166 ------PYELFEDAEWALLIGAKPR------GPGMERAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 166 ------~~eal~dADiVIitag~~~------kpg~~r~~ll~~N~~i----i~~i~~~i~~~a~p~aivIvvtNP 224 (439)
..+..-..|+.|..||... .+..+-.++++-|+-- .+.+.+.|.+. ..|-||+++.=
T Consensus 72 ~~l~~~l~~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~--~~G~IiNI~S~ 144 (265)
T COG0300 72 ERLEDELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVER--GAGHIINIGSA 144 (265)
T ss_pred HHHHHHHHhcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCceEEEEech
Confidence 1122236899999988643 1223445566666443 44455666663 45667777653
No 99
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=96.79 E-value=0.011 Score=59.94 Aligned_cols=105 Identities=20% Similarity=0.108 Sum_probs=58.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCC-C------CccEEEecCccc
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP-L------LREVKIGINPYE 168 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~-~------~~~v~i~~~~~e 168 (439)
+|||+|||+ |.+|..++..|...+. ++.+. +++. ..+....+-...... . ..++... .+.+
T Consensus 2 ~mkI~IiG~-G~mG~~~A~~L~~~G~-----~V~~~----~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~ 69 (341)
T PRK08229 2 MARICVLGA-GSIGCYLGGRLAAAGA-----DVTLI----GRAR-IGDELRAHGLTLTDYRGRDVRVPPSAIAFS-TDPA 69 (341)
T ss_pred CceEEEECC-CHHHHHHHHHHHhcCC-----cEEEE----ecHH-HHHHHHhcCceeecCCCcceecccceeEec-cChh
Confidence 479999995 9999999999998763 25552 4432 122211100000000 0 0112233 3457
Q ss_pred ccCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHH
Q 013619 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (439)
Q Consensus 169 al~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~ 228 (439)
+++++|+||++...+. ..++.+.+..+..++.+|+..+|..+..
T Consensus 70 ~~~~~D~vil~vk~~~----------------~~~~~~~l~~~~~~~~iii~~~nG~~~~ 113 (341)
T PRK08229 70 ALATADLVLVTVKSAA----------------TADAAAALAGHARPGAVVVSFQNGVRNA 113 (341)
T ss_pred hccCCCEEEEEecCcc----------------hHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence 8899999999853221 1122334444435677888889987644
No 100
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=96.78 E-value=0.0071 Score=59.85 Aligned_cols=65 Identities=23% Similarity=0.279 Sum_probs=42.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (439)
|||+||| .|.+|..++..|...+. +|.+ +|++.+.++. +.+. .. +.....+.+++++||+|
T Consensus 1 m~I~IIG-~G~mG~sla~~L~~~g~-----~V~~----~d~~~~~~~~-a~~~--g~------~~~~~~~~~~~~~aDlV 61 (279)
T PRK07417 1 MKIGIVG-LGLIGGSLGLDLRSLGH-----TVYG----VSRRESTCER-AIER--GL------VDEASTDLSLLKDCDLV 61 (279)
T ss_pred CeEEEEe-ecHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHH-HHHC--CC------cccccCCHhHhcCCCEE
Confidence 5899999 59999999999987652 2555 4666555542 2221 11 11223345678999999
Q ss_pred EEeC
Q 013619 177 LLIG 180 (439)
Q Consensus 177 Iita 180 (439)
|++.
T Consensus 62 ilav 65 (279)
T PRK07417 62 ILAL 65 (279)
T ss_pred EEcC
Confidence 9983
No 101
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=96.73 E-value=0.013 Score=61.63 Aligned_cols=75 Identities=15% Similarity=0.211 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCC----------ccEEEec
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL----------REVKIGI 164 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~----------~~v~i~~ 164 (439)
++|||+||| .|.||..+|..|+.+ + ++.. +|+++++.+.+ +....++. .....+
T Consensus 5 ~~mkI~vIG-lGyvGlpmA~~la~~--~----~V~g----~D~~~~~ve~l----~~G~~~~~e~~~~~l~~~g~l~~t- 68 (425)
T PRK15182 5 DEVKIAIIG-LGYVGLPLAVEFGKS--R----QVVG----FDVNKKRILEL----KNGVDVNLETTEEELREARYLKFT- 68 (425)
T ss_pred CCCeEEEEC-cCcchHHHHHHHhcC--C----EEEE----EeCCHHHHHHH----HCcCCCCCCCCHHHHHhhCCeeEE-
Confidence 568999999 699999999998763 2 1433 46776665543 32321211 123344
Q ss_pred CcccccCCCcEEEEeCCcCCC
Q 013619 165 NPYELFEDAEWALLIGAKPRG 185 (439)
Q Consensus 165 ~~~eal~dADiVIitag~~~k 185 (439)
.+.+++++||++|++.+.|.+
T Consensus 69 ~~~~~~~~advvii~Vptp~~ 89 (425)
T PRK15182 69 SEIEKIKECNFYIITVPTPIN 89 (425)
T ss_pred eCHHHHcCCCEEEEEcCCCCC
Confidence 456689999999999888754
No 102
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.71 E-value=0.0092 Score=61.89 Aligned_cols=76 Identities=21% Similarity=0.252 Sum_probs=50.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEE--ecCcccccCCC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI--GINPYELFEDA 173 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i--~~~~~eal~dA 173 (439)
|+||.|||| |+||+.+|..|++.+. . +|.+ .|++.+++...+....... . ...+.+ .....+.+++.
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d-~---~V~i----AdRs~~~~~~i~~~~~~~v-~-~~~vD~~d~~al~~li~~~ 69 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGD-G---EVTI----ADRSKEKCARIAELIGGKV-E-ALQVDAADVDALVALIKDF 69 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCC-c---eEEE----EeCCHHHHHHHHhhccccc-e-eEEecccChHHHHHHHhcC
Confidence 689999996 9999999999998875 2 3776 5777777665433211000 0 011122 22356889999
Q ss_pred cEEEEeCCc
Q 013619 174 EWALLIGAK 182 (439)
Q Consensus 174 DiVIitag~ 182 (439)
|+||.++..
T Consensus 70 d~VIn~~p~ 78 (389)
T COG1748 70 DLVINAAPP 78 (389)
T ss_pred CEEEEeCCc
Confidence 999998653
No 103
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.71 E-value=0.013 Score=61.58 Aligned_cols=113 Identities=15% Similarity=0.107 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCC----------CCccEEEecC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP----------LLREVKIGIN 165 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~----------~~~~v~i~~~ 165 (439)
++||+||| .|.+|..+|..|+..+. ++.. .|+++++++.+.....+...+ .......++
T Consensus 3 ~~kI~VIG-lG~~G~~~A~~La~~G~-----~V~~----~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~- 71 (415)
T PRK11064 3 FETISVIG-LGYIGLPTAAAFASRQK-----QVIG----VDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATT- 71 (415)
T ss_pred ccEEEEEC-cchhhHHHHHHHHhCCC-----EEEE----EeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeec-
Confidence 57999999 59999999999998762 2444 466767766432110000000 001223332
Q ss_pred cccccCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeC-CchhHH
Q 013619 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCNTN 228 (439)
Q Consensus 166 ~~eal~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvt-NPvd~~ 228 (439)
++++||+||++...|.++.. .. ....+.+.++.|.++..++.+||+.| -|..+.
T Consensus 72 ---~~~~aDvvii~vptp~~~~~-~~-----dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt 126 (415)
T PRK11064 72 ---TPEPADAFLIAVPTPFKGDH-EP-----DLTYVEAAAKSIAPVLKKGDLVILESTSPVGAT 126 (415)
T ss_pred ---ccccCCEEEEEcCCCCCCCC-Cc-----ChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHH
Confidence 24589999999877653321 11 12334444455555544555555544 465443
No 104
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.69 E-value=0.0071 Score=60.27 Aligned_cols=74 Identities=15% Similarity=0.134 Sum_probs=53.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (439)
+..||.|+|| |.+|.++++.|+..+.- .|.+ .|++.+++++++.++.+.. +. ..+....+.++.++++|
T Consensus 126 ~~k~vlIlGa-GGaaraia~aL~~~G~~----~I~I----~nR~~~ka~~la~~l~~~~-~~-~~~~~~~~~~~~~~~aD 194 (284)
T PRK12549 126 SLERVVQLGA-GGAGAAVAHALLTLGVE----RLTI----FDVDPARAAALADELNARF-PA-ARATAGSDLAAALAAAD 194 (284)
T ss_pred cCCEEEEECC-cHHHHHHHHHHHHcCCC----EEEE----ECCCHHHHHHHHHHHHhhC-CC-eEEEeccchHhhhCCCC
Confidence 3468999995 99999999999987742 3666 5788899999988886542 21 11211122356789999
Q ss_pred EEEEe
Q 013619 175 WALLI 179 (439)
Q Consensus 175 iVIit 179 (439)
+||.+
T Consensus 195 iVIna 199 (284)
T PRK12549 195 GLVHA 199 (284)
T ss_pred EEEEC
Confidence 99997
No 105
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=96.68 E-value=0.0077 Score=59.07 Aligned_cols=61 Identities=15% Similarity=0.238 Sum_probs=42.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (439)
|||+|||+ |++|.+++..|...+.+.. +.|.. .+++.+++ .+....++.+.++++|+|
T Consensus 4 mkI~iIG~-G~mG~ai~~~l~~~~~~~~-~~i~~----~~~~~~~~----------------~~~~~~~~~~~~~~~D~V 61 (260)
T PTZ00431 4 IRVGFIGL-GKMGSALAYGIENSNIIGK-ENIYY----HTPSKKNT----------------PFVYLQSNEELAKTCDII 61 (260)
T ss_pred CEEEEECc-cHHHHHHHHHHHhCCCCCc-ceEEE----ECCChhcC----------------CeEEeCChHHHHHhCCEE
Confidence 69999995 9999999999998775543 23544 35543321 012334566678899999
Q ss_pred EEe
Q 013619 177 LLI 179 (439)
Q Consensus 177 Iit 179 (439)
|++
T Consensus 62 ila 64 (260)
T PTZ00431 62 VLA 64 (260)
T ss_pred EEE
Confidence 987
No 106
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=96.63 E-value=0.022 Score=57.05 Aligned_cols=68 Identities=24% Similarity=0.270 Sum_probs=44.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (439)
+||+|||+ |.+|..++..|...+... .|.+ .|++.+.++. +.++ .. ...+..+..+.+++||+|
T Consensus 7 ~~I~IIG~-G~mG~sla~~l~~~g~~~---~V~~----~dr~~~~~~~-a~~~-----g~--~~~~~~~~~~~~~~aDvV 70 (307)
T PRK07502 7 DRVALIGI-GLIGSSLARAIRRLGLAG---EIVG----ADRSAETRAR-AREL-----GL--GDRVTTSAAEAVKGADLV 70 (307)
T ss_pred cEEEEEee-CHHHHHHHHHHHhcCCCc---EEEE----EECCHHHHHH-HHhC-----CC--CceecCCHHHHhcCCCEE
Confidence 68999995 999999999998776421 2544 4666655442 2221 11 112334456778999999
Q ss_pred EEeC
Q 013619 177 LLIG 180 (439)
Q Consensus 177 Iita 180 (439)
|++.
T Consensus 71 iiav 74 (307)
T PRK07502 71 ILCV 74 (307)
T ss_pred EECC
Confidence 9984
No 107
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.61 E-value=0.0058 Score=53.97 Aligned_cols=76 Identities=22% Similarity=0.140 Sum_probs=53.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (439)
+..||.|||| |.+|..+++.|...+. ..|.+ .+++.++++.++..+... .-...-..+..+.+.++|
T Consensus 11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~----~~i~i----~nRt~~ra~~l~~~~~~~----~~~~~~~~~~~~~~~~~D 77 (135)
T PF01488_consen 11 KGKRVLVIGA-GGAARAVAAALAALGA----KEITI----VNRTPERAEALAEEFGGV----NIEAIPLEDLEEALQEAD 77 (135)
T ss_dssp TTSEEEEESS-SHHHHHHHHHHHHTTS----SEEEE----EESSHHHHHHHHHHHTGC----SEEEEEGGGHCHHHHTES
T ss_pred CCCEEEEECC-HHHHHHHHHHHHHcCC----CEEEE----EECCHHHHHHHHHHcCcc----ccceeeHHHHHHHHhhCC
Confidence 4569999996 9999999999998875 23766 588888888887777211 011222344556788999
Q ss_pred EEEEeCCcC
Q 013619 175 WALLIGAKP 183 (439)
Q Consensus 175 iVIitag~~ 183 (439)
+||.+.+.+
T Consensus 78 ivI~aT~~~ 86 (135)
T PF01488_consen 78 IVINATPSG 86 (135)
T ss_dssp EEEE-SSTT
T ss_pred eEEEecCCC
Confidence 999986544
No 108
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=96.56 E-value=0.019 Score=58.22 Aligned_cols=121 Identities=12% Similarity=0.040 Sum_probs=77.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCce-EEEecccccchhhHHHHHHHHhcccCCCC----ccEEEecCcccc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPI-ALKLLGSERSLQALEGVAMELEDSLFPLL----REVKIGINPYEL 169 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I-~L~l~~~d~~~e~l~g~a~DL~~~~~~~~----~~v~i~~~~~ea 169 (439)
..++|+|.||+|.||++++..|+++|.. .. .++ |...++-..+..+|.... ..+ .++.-...-.++
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~----V~gtVR----~~~~~k~~~~L~~l~~a~-~~l~l~~aDL~d~~sf~~a 75 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYT----VRGTVR----DPEDEKKTEHLRKLEGAK-ERLKLFKADLLDEGSFDKA 75 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCE----EEEEEc----CcchhhhHHHHHhcccCc-ccceEEeccccccchHHHH
Confidence 4579999999999999999999998852 12 221 222222222556665332 111 122223345679
Q ss_pred cCCCcEEEEeCCcCCCCCC-chhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 013619 170 FEDAEWALLIGAKPRGPGM-ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (439)
Q Consensus 170 l~dADiVIitag~~~kpg~-~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd 226 (439)
+++||.|+-+|....-... .-.++++-.++=...+.+.+.+. +..+=+|+|+-+.
T Consensus 76 i~gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~--~sVkrvV~TSS~a 131 (327)
T KOG1502|consen 76 IDGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKT--KSVKRVVYTSSTA 131 (327)
T ss_pred HhCCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhcc--CCcceEEEeccHH
Confidence 9999999999864321112 24467888888888999999986 3566666666543
No 109
>PLN02427 UDP-apiose/xylose synthase
Probab=96.49 E-value=0.0058 Score=62.88 Aligned_cols=115 Identities=17% Similarity=0.084 Sum_probs=63.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccC-CCCccEEEe-c------C
Q 013619 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF-PLLREVKIG-I------N 165 (439)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~-~~~~~v~i~-~------~ 165 (439)
.++|||.|+||+|+||++++..|+..+-. +|.. .+++.++... +..... ....+++.. . .
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~----~V~~----l~r~~~~~~~----l~~~~~~~~~~~~~~~~~Dl~d~~~ 79 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTETPH----KVLA----LDVYNDKIKH----LLEPDTVPWSGRIQFHRINIKHDSR 79 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcCCC----EEEE----EecCchhhhh----hhccccccCCCCeEEEEcCCCChHH
Confidence 45789999999999999999999986311 2332 2443333221 111100 011122221 1 1
Q ss_pred cccccCCCcEEEEeCCcCCCCC--CchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 166 PYELFEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 166 ~~eal~dADiVIitag~~~kpg--~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
..++++++|+||.+|+...... ....+.+..|+.-...+.+...+. + ..||.++.
T Consensus 80 l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~-~--~r~v~~SS 136 (386)
T PLN02427 80 LEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSEN-N--KRLIHFST 136 (386)
T ss_pred HHHHhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhc-C--CEEEEEee
Confidence 2356778999999987542111 122344556665555666666553 3 35666664
No 110
>PLN02206 UDP-glucuronate decarboxylase
Probab=96.42 E-value=0.03 Score=59.29 Aligned_cols=113 Identities=11% Similarity=0.131 Sum_probs=66.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEE-ecC-cccccC
Q 013619 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN-PYELFE 171 (439)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i-~~~-~~eal~ 171 (439)
.+.|||.|+||+|+||++++..|+..+. +|.. + |...........+. . .. .++.. ..| ....+.
T Consensus 117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~-----~V~~--l--d~~~~~~~~~~~~~--~--~~-~~~~~i~~D~~~~~l~ 182 (442)
T PLN02206 117 RKGLRVVVTGGAGFVGSHLVDRLMARGD-----SVIV--V--DNFFTGRKENVMHH--F--SN-PNFELIRHDVVEPILL 182 (442)
T ss_pred cCCCEEEEECcccHHHHHHHHHHHHCcC-----EEEE--E--eCCCccchhhhhhh--c--cC-CceEEEECCccChhhc
Confidence 3558999999999999999999998753 2432 1 22111111111111 0 00 11221 111 234567
Q ss_pred CCcEEEEeCCcCC--CCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 172 DAEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 172 dADiVIitag~~~--kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
++|+||.+|+... ....+-.+.++.|+.....+.+.+.+. + ..+|.++.
T Consensus 183 ~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~-g--~r~V~~SS 233 (442)
T PLN02206 183 EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-G--ARFLLTST 233 (442)
T ss_pred CCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHh-C--CEEEEECC
Confidence 8999999987532 111234567788988888898888775 3 36666655
No 111
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.39 E-value=0.015 Score=58.33 Aligned_cols=108 Identities=12% Similarity=0.058 Sum_probs=59.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCC-CccEEEecCcccccCCCcE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFEDAEW 175 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~-~~~v~i~~~~~eal~dADi 175 (439)
|||.|+||+|++|++++..|+..+. +|.. ..++.+++. .+.+....+ ..++.-.....++++++|+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~-----~V~~----l~R~~~~~~----~l~~~~v~~v~~Dl~d~~~l~~al~g~d~ 67 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY-----QVRC----LVRNLRKAS----FLKEWGAELVYGDLSLPETLPPSFKGVTA 67 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----eEEE----EEcChHHhh----hHhhcCCEEEECCCCCHHHHHHHHCCCCE
Confidence 6999999999999999999998763 2432 234433322 111110000 0011101123567899999
Q ss_pred EEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeC
Q 013619 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (439)
Q Consensus 176 VIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvt 222 (439)
||.+++... ....+....|..-...+.+.+++. +-. .+|.++
T Consensus 68 Vi~~~~~~~---~~~~~~~~~~~~~~~~l~~aa~~~-gvk-r~I~~S 109 (317)
T CHL00194 68 IIDASTSRP---SDLYNAKQIDWDGKLALIEAAKAA-KIK-RFIFFS 109 (317)
T ss_pred EEECCCCCC---CCccchhhhhHHHHHHHHHHHHHc-CCC-EEEEec
Confidence 999765321 111223445666666777777764 333 455544
No 112
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=96.34 E-value=0.018 Score=58.09 Aligned_cols=117 Identities=9% Similarity=0.038 Sum_probs=67.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEe--cCcccccCCC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFEDA 173 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~--~~~~eal~dA 173 (439)
.++|.|+||+|.||++++..|+..+-. ..|.+ .+++.........++......+ ....+. ....+++++.
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~---~~V~~----~~r~~~~~~~~~~~~~~~~~~~-v~~Dl~d~~~l~~~~~~i 75 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNP---KKIII----YSRDELKQWEMQQKFPAPCLRF-FIGDVRDKERLTRALRGV 75 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCC---cEEEE----EcCChhHHHHHHHHhCCCcEEE-EEccCCCHHHHHHHHhcC
Confidence 468999999999999999999876411 12443 2333333332222222100000 000111 1123456789
Q ss_pred cEEEEeCCcCCCC--CCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeC
Q 013619 174 EWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (439)
Q Consensus 174 DiVIitag~~~kp--g~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvt 222 (439)
|+||.+||....+ ..+..+.+..|+.-...+.+.+.+. +. ..||.++
T Consensus 76 D~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~-~~-~~iV~~S 124 (324)
T TIGR03589 76 DYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDN-GV-KRVVALS 124 (324)
T ss_pred CEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHc-CC-CEEEEEe
Confidence 9999998864322 2234567888888888888888774 33 3455554
No 113
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.30 E-value=0.0061 Score=52.69 Aligned_cols=75 Identities=21% Similarity=0.219 Sum_probs=42.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEEE
Q 013619 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (439)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVI 177 (439)
||+|+||+|.+|..++..|...+-+. +. .++....+..+. . .+.. ..........+...+.+.+.++|+|+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e----~~-~~~~~~~~~g~~--~-~~~~-~~~~~~~~~~~~~~~~~~~~~~Dvvf 71 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFE----LV-ALVSSSRSAGKP--L-SEVF-PHPKGFEDLSVEDADPEELSDVDVVF 71 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEE----EE-EEEESTTTTTSB--H-HHTT-GGGTTTEEEBEEETSGHHHTTESEEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCcc----EE-EeeeeccccCCe--e-ehhc-cccccccceeEeecchhHhhcCCEEE
Confidence 79999999999999999998855432 21 122212101111 1 1111 10011134455556778889999999
Q ss_pred EeCC
Q 013619 178 LIGA 181 (439)
Q Consensus 178 itag 181 (439)
++.+
T Consensus 72 ~a~~ 75 (121)
T PF01118_consen 72 LALP 75 (121)
T ss_dssp E-SC
T ss_pred ecCc
Confidence 9843
No 114
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=96.27 E-value=0.0066 Score=58.23 Aligned_cols=108 Identities=21% Similarity=0.265 Sum_probs=70.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHH----HHHHHHhcccC------C-------
Q 013619 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE----GVAMELEDSLF------P------- 155 (439)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~----g~a~DL~~~~~------~------- 155 (439)
+.+...|+|||| |.+|+.+|.-.++.++ ++.| .|.|++.|. ++...+.+.+. +
T Consensus 8 ~~~~~~V~ivGa-G~MGSGIAQv~a~sg~-----~V~l----~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v 77 (298)
T KOG2304|consen 8 MAEIKNVAIVGA-GQMGSGIAQVAATSGL-----NVWL----VDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFV 77 (298)
T ss_pred cccccceEEEcc-cccchhHHHHHHhcCC-----ceEE----ecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHH
Confidence 345568999996 9999999998888775 3666 356655554 33333332221 0
Q ss_pred --CCccEEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 013619 156 --LLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (439)
Q Consensus 156 --~~~~v~i~~~~~eal~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd 226 (439)
.+.++..+++-..++.|||+|| +.+-.|+.|=+++=+.|.+.|.+++ |..||...
T Consensus 78 ~~~l~ri~~~tnv~~~v~dadlii--------------EAivEn~diK~~lF~~l~~~ak~~~--il~tNTSS 134 (298)
T KOG2304|consen 78 DDTLDRIKTSTNVSDAVSDADLII--------------EAIVENLDIKRKLFKDLDKIAKSST--ILATNTSS 134 (298)
T ss_pred HHHHHHHHHcCCHHHhhhhhHHHH--------------HHHHHhHHHHHHHHHHHHhhcccce--EEeecccc
Confidence 0124555677778888888876 3355678888888888888865565 45677764
No 115
>PLN02778 3,5-epimerase/4-reductase
Probab=96.25 E-value=0.061 Score=53.65 Aligned_cols=88 Identities=7% Similarity=0.035 Sum_probs=57.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (439)
.|||.|+||+|++|++++..|...+. ++.+. ..+. ...+.+..|+.+ .+.|+
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~-----~V~~~--~~~~--~~~~~v~~~l~~-------------------~~~D~ 60 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGI-----DFHYG--SGRL--ENRASLEADIDA-------------------VKPTH 60 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCC-----EEEEe--cCcc--CCHHHHHHHHHh-------------------cCCCE
Confidence 47999999999999999999987653 24321 1111 112223333321 15899
Q ss_pred EEEeCCcCCCCC-----CchhhhHHHHHHHHHHHHHHHHhh
Q 013619 176 ALLIGAKPRGPG-----MERAGLLDINGQIFAEQGKALNAV 211 (439)
Q Consensus 176 VIitag~~~kpg-----~~r~~ll~~N~~ii~~i~~~i~~~ 211 (439)
||.+|+....+. ....+.+..|......+++.+++.
T Consensus 61 ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~ 101 (298)
T PLN02778 61 VFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRER 101 (298)
T ss_pred EEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999987643222 234567788888888888888875
No 116
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.22 E-value=0.02 Score=57.48 Aligned_cols=80 Identities=14% Similarity=0.093 Sum_probs=52.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (439)
.|||+|||+ |.+|.+++..|...+. +|.++ +++.. .+..+++++||+
T Consensus 4 ~m~I~iiG~-G~~G~~lA~~l~~~G~-----~V~~~----~r~~~-----------------------~~~~~~~~~adv 50 (308)
T PRK14619 4 PKTIAILGA-GAWGSTLAGLASANGH-----RVRVW----SRRSG-----------------------LSLAAVLADADV 50 (308)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCC-----EEEEE----eCCCC-----------------------CCHHHHHhcCCE
Confidence 579999995 9999999999998763 35552 44321 123466789999
Q ss_pred EEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhh-cCCCeEEEEeCCc
Q 013619 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV-ASRNVKVIVVGNP 224 (439)
Q Consensus 176 VIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~-a~p~aivIvvtNP 224 (439)
||++.- .+.+.++++.+..+ ..++.+|+..++.
T Consensus 51 vi~~vp----------------~~~~~~v~~~l~~~~~~~~~ivi~~s~g 84 (308)
T PRK14619 51 IVSAVS----------------MKGVRPVAEQVQALNLPPETIIVTATKG 84 (308)
T ss_pred EEEECC----------------hHHHHHHHHHHHHhcCCCCcEEEEeCCc
Confidence 999732 12344444555432 2467788888873
No 117
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.22 E-value=0.018 Score=58.90 Aligned_cols=97 Identities=24% Similarity=0.331 Sum_probs=64.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhc-CCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCc
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~-~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (439)
..+|.|+||+|.+|+.++..|+.. +.. .+.+ .+++.++++..+.++.+.. + .+..+++.++|
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~----~lil----v~R~~~rl~~La~el~~~~------i---~~l~~~l~~aD 217 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGVA----ELLL----VARQQERLQELQAELGGGK------I---LSLEEALPEAD 217 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCCC----EEEE----EcCCHHHHHHHHHHhcccc------H---HhHHHHHccCC
Confidence 468999998899999999999753 321 2544 4677778877766654221 1 13457899999
Q ss_pred EEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHH
Q 013619 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (439)
Q Consensus 175 iVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~ 228 (439)
+||.+++.+...-.+..++ .+..+++-++-|=|+-
T Consensus 218 iVv~~ts~~~~~~I~~~~l-------------------~~~~~viDiAvPRDVd 252 (340)
T PRK14982 218 IVVWVASMPKGVEIDPETL-------------------KKPCLMIDGGYPKNLD 252 (340)
T ss_pred EEEECCcCCcCCcCCHHHh-------------------CCCeEEEEecCCCCCC
Confidence 9999888764211222111 1457888888886653
No 118
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=96.19 E-value=0.016 Score=57.59 Aligned_cols=113 Identities=16% Similarity=0.148 Sum_probs=67.4
Q ss_pred EEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccC--CCCccEEEecCcccccCCCcEEEE
Q 013619 101 VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIGINPYELFEDAEWALL 178 (439)
Q Consensus 101 IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~--~~~~~v~i~~~~~eal~dADiVIi 178 (439)
|+||+|++|++++..|+..+-.. .|.. +|.......+. ++.+... .+..+++-..+..++++++|+||.
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~~---~Vr~--~d~~~~~~~~~----~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H 72 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYIY---EVRV--LDRSPPPKFLK----DLQKSGVKEYIQGDITDPESLEEALEGVDVVFH 72 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCce---EEEE--cccccccccch----hhhcccceeEEEeccccHHHHHHHhcCCceEEE
Confidence 89999999999999999877421 2433 33222211111 1111110 011222223345689999999999
Q ss_pred eCCcCCCCC-CchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 013619 179 IGAKPRGPG-MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (439)
Q Consensus 179 tag~~~kpg-~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPv 225 (439)
+|+...-.+ ..+..+.+.|++=.+.+.+...+. +..-+|+|.-+
T Consensus 73 ~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~---~VkrlVytSS~ 117 (280)
T PF01073_consen 73 TAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKA---GVKRLVYTSSI 117 (280)
T ss_pred eCccccccCcccHHHHHHHHHHHHHHHHHHHHHc---CCCEEEEEcCc
Confidence 987533223 356668888988888888888774 34444444433
No 119
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.16 E-value=0.022 Score=53.19 Aligned_cols=104 Identities=16% Similarity=0.137 Sum_probs=59.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEe--cCcccccCCCc
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFEDAE 174 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~--~~~~eal~dAD 174 (439)
|||+||||+|.+|+.++.....++. +...+ -+|..++... +... -. +-.+. +...+++.+-|
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH----eVTAi-----vRn~~K~~~~----~~~~-i~--q~Difd~~~~a~~l~g~D 64 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH----EVTAI-----VRNASKLAAR----QGVT-IL--QKDIFDLTSLASDLAGHD 64 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC----eeEEE-----EeChHhcccc----ccce-ee--cccccChhhhHhhhcCCc
Confidence 7999999999999999999998874 22333 3455554321 1000 00 01111 12348899999
Q ss_pred EEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 013619 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 175 iVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNP 224 (439)
+||.+-|.+. ++.. .+. .+-...+...++.. -...++|++--
T Consensus 65 aVIsA~~~~~-~~~~--~~~---~k~~~~li~~l~~a--gv~RllVVGGA 106 (211)
T COG2910 65 AVISAFGAGA-SDND--ELH---SKSIEALIEALKGA--GVPRLLVVGGA 106 (211)
T ss_pred eEEEeccCCC-CChh--HHH---HHHHHHHHHHHhhc--CCeeEEEEcCc
Confidence 9999866442 2221 111 22244455555552 35577777654
No 120
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.13 E-value=0.011 Score=57.69 Aligned_cols=69 Identities=19% Similarity=0.252 Sum_probs=45.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (439)
|||+|||+ |++|.+++..|...+.-- ..+.+ .+++.++++..+..+. .+.+..+..+.+++||+|
T Consensus 1 m~IgiIG~-G~mG~aia~~L~~~g~~~--~~i~v----~~r~~~~~~~l~~~~~--------~~~~~~~~~~~~~~aDvV 65 (258)
T PRK06476 1 MKIGFIGT-GAITEAMVTGLLTSPADV--SEIIV----SPRNAQIAARLAERFP--------KVRIAKDNQAVVDRSDVV 65 (258)
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCCCh--heEEE----ECCCHHHHHHHHHHcC--------CceEeCCHHHHHHhCCEE
Confidence 58999995 999999999999776311 12334 4666666654433221 133445566678899999
Q ss_pred EEeC
Q 013619 177 LLIG 180 (439)
Q Consensus 177 Iita 180 (439)
|++.
T Consensus 66 ilav 69 (258)
T PRK06476 66 FLAV 69 (258)
T ss_pred EEEe
Confidence 9984
No 121
>PLN02650 dihydroflavonol-4-reductase
Probab=96.13 E-value=0.032 Score=56.55 Aligned_cols=116 Identities=11% Similarity=0.102 Sum_probs=65.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEE-----Ee--cCccc
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-----IG--INPYE 168 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~-----i~--~~~~e 168 (439)
.++|.|+||+|+||++++..|+..+. .|.+. +++.+.+.... ++.... ....++. ++ ....+
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~-----~V~~~----~r~~~~~~~~~-~~~~~~-~~~~~~~~v~~Dl~d~~~~~~ 73 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGY-----TVRAT----VRDPANVKKVK-HLLDLP-GATTRLTLWKADLAVEGSFDD 73 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCC-----EEEEE----EcCcchhHHHH-HHHhcc-CCCCceEEEEecCCChhhHHH
Confidence 45899999999999999999998653 24331 22323333221 221100 0000111 11 11235
Q ss_pred ccCCCcEEEEeCCcCCCCCCc-hhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 169 LFEDAEWALLIGAKPRGPGME-RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 169 al~dADiVIitag~~~kpg~~-r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
.++++|+||.+|+.......+ ..+.+..|+.-...+.+.+.+. +.-..||.++-
T Consensus 74 ~~~~~d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-~~~~r~v~~SS 128 (351)
T PLN02650 74 AIRGCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKA-KTVRRIVFTSS 128 (351)
T ss_pred HHhCCCEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhc-CCceEEEEecc
Confidence 677899999988743211112 2356777888888888887764 22235666544
No 122
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=96.12 E-value=0.011 Score=59.79 Aligned_cols=108 Identities=10% Similarity=0.075 Sum_probs=61.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEe-cC---c----c
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN---P----Y 167 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~-~~---~----~ 167 (439)
||||.|+||+|+||++++..|+..+-. .|.. .+++.+... ++... + .+.+. .| + .
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~----~V~~----~~r~~~~~~----~~~~~--~---~~~~~~~Dl~~~~~~~~ 63 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDW----EVYG----MDMQTDRLG----DLVNH--P---RMHFFEGDITINKEWIE 63 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCC----eEEE----EeCcHHHHH----HhccC--C---CeEEEeCCCCCCHHHHH
Confidence 579999999999999999999864211 2433 244332221 12111 0 11111 11 1 1
Q ss_pred cccCCCcEEEEeCCcCC--CCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 168 ELFEDAEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 168 eal~dADiVIitag~~~--kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
+.++++|+||.+++... ....+.......|+.-...+.+.+.+. + ..+|.++.
T Consensus 64 ~~~~~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~-~--~~~v~~SS 118 (347)
T PRK11908 64 YHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKY-G--KHLVFPST 118 (347)
T ss_pred HHHcCCCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhc-C--CeEEEEec
Confidence 35689999999877532 112233344566767677777777764 3 45665554
No 123
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=96.10 E-value=0.0056 Score=61.17 Aligned_cols=122 Identities=20% Similarity=0.188 Sum_probs=69.3
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccC-C-C-------CccEEEecCcccc
Q 013619 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF-P-L-------LREVKIGINPYEL 169 (439)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~-~-~-------~~~v~i~~~~~ea 169 (439)
|-|+||+|.||+.++..|+..+.. .|.+ .|+++.++..+.++|..... + . ..+++-.......
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~----~lil----~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~ 72 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPK----KLIL----FDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRI 72 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-S----EEEE----EES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHH
T ss_pred CEEEccccHHHHHHHHHHHhcCCC----eEEE----eCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHH
Confidence 679999999999999999986542 2544 47788888888787742210 0 1 1111111112456
Q ss_pred cC--CCcEEEEeCCcCCCCCC--chhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeC----CchhHHH
Q 013619 170 FE--DAEWALLIGAKPRGPGM--ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG----NPCNTNA 229 (439)
Q Consensus 170 l~--dADiVIitag~~~kpg~--~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvt----NPvd~~t 229 (439)
++ +.|+|+.+|..-.-|-+ .-.+.++.|+-=-+.+++...++ +-+-+|.+-| ||.++|.
T Consensus 73 ~~~~~pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~-~v~~~v~ISTDKAv~PtnvmG 139 (293)
T PF02719_consen 73 FEEYKPDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEH-GVERFVFISTDKAVNPTNVMG 139 (293)
T ss_dssp TT--T-SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHT-T-SEEEEEEECGCSS--SHHH
T ss_pred HhhcCCCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEccccccCCCCcHHH
Confidence 67 99999999875322222 33566777876677777777776 4555555544 6776653
No 124
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=96.10 E-value=0.071 Score=54.13 Aligned_cols=117 Identities=12% Similarity=0.008 Sum_probs=64.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCC-CCccEEEec-C------c
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP-LLREVKIGI-N------P 166 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~-~~~~v~i~~-~------~ 166 (439)
+++||.|+||+|+||++++..|+..+. +|.. +|+..........++...... ...++.... | .
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~g~-----~V~~----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l 84 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFLNQ-----TVIG----LDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDC 84 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHCCC-----EEEE----EeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHH
Confidence 457999999999999999999998752 2433 232211111000111100000 001122111 1 1
Q ss_pred ccccCCCcEEEEeCCcCCCC--CCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeC
Q 013619 167 YELFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (439)
Q Consensus 167 ~eal~dADiVIitag~~~kp--g~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvt 222 (439)
.+.++++|+||.+|+....+ .....+....|+.-...+.+.+++. +.. .+|.++
T Consensus 85 ~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~-~~~-~~v~~S 140 (348)
T PRK15181 85 QKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDA-HVS-SFTYAA 140 (348)
T ss_pred HHHhhCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCC-eEEEee
Confidence 23478899999998754322 1233456778888888888888775 322 455554
No 125
>PLN00198 anthocyanidin reductase; Provisional
Probab=96.06 E-value=0.03 Score=56.30 Aligned_cols=116 Identities=14% Similarity=0.116 Sum_probs=64.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEE-ec------Ccc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI------NPY 167 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i-~~------~~~ 167 (439)
+++||.|+||+|+||++++..|+..+. +|.+... + .+..... .++.... ...++.+ .. ...
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L~~~g~-----~V~~~~r--~--~~~~~~~-~~~~~~~--~~~~~~~~~~Dl~d~~~~~ 75 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLLLQKGY-----AVNTTVR--D--PENQKKI-AHLRALQ--ELGDLKIFGADLTDEESFE 75 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHHHHCCC-----EEEEEEC--C--CCCHHHH-HHHHhcC--CCCceEEEEcCCCChHHHH
Confidence 356899999999999999999998753 2433211 2 1222111 1111100 0011211 11 123
Q ss_pred cccCCCcEEEEeCCcCCCCCCc-hhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 168 ELFEDAEWALLIGAKPRGPGME-RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 168 eal~dADiVIitag~~~kpg~~-r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
+.++++|+||..|+.......+ ..+++..|+.-...+.+.+.+. +.-..||.++.
T Consensus 76 ~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~-~~~~~~v~~SS 131 (338)
T PLN00198 76 APIAGCDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKA-KSVKRVILTSS 131 (338)
T ss_pred HHHhcCCEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhc-CCccEEEEeec
Confidence 4578899999988743211112 2345678888888888887774 22234555443
No 126
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.01 E-value=0.032 Score=56.29 Aligned_cols=103 Identities=20% Similarity=0.245 Sum_probs=65.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (439)
..+||+|||+ |.+|..++..|...+. ..|.+ .+++.++++..+..+.. .+....+..+.+.++|
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~----~~V~v----~~r~~~ra~~la~~~g~-------~~~~~~~~~~~l~~aD 240 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKGV----AEITI----ANRTYERAEELAKELGG-------NAVPLDELLELLNEAD 240 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcCC----CEEEE----EeCCHHHHHHHHHHcCC-------eEEeHHHHHHHHhcCC
Confidence 4579999996 9999999999887442 23555 47777777666665431 1111234567789999
Q ss_pred EEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHH
Q 013619 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (439)
Q Consensus 175 iVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~ 228 (439)
+||.+.+.+. + ..++... +........+++-+++|-|+=
T Consensus 241 vVi~at~~~~-~-----------~~~~~~~---~~~~~~~~~~viDlavPrdi~ 279 (311)
T cd05213 241 VVISATGAPH-Y-----------AKIVERA---MKKRSGKPRLIVDLAVPRDIE 279 (311)
T ss_pred EEEECCCCCc-h-----------HHHHHHH---HhhCCCCCeEEEEeCCCCCCc
Confidence 9999876553 1 1112222 111102456899999998743
No 127
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.95 E-value=0.052 Score=54.49 Aligned_cols=123 Identities=15% Similarity=0.129 Sum_probs=67.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHH--HhcccCCCCccEEEecCcccccCCC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME--LEDSLFPLLREVKIGINPYELFEDA 173 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~D--L~~~~~~~~~~v~i~~~~~eal~dA 173 (439)
.|||+|+|| |.||+.++..|...+. ++.| +++..++++.+..+ |.-........+.+...+.+.....
T Consensus 2 ~m~I~IiGa-GaiG~~~a~~L~~~G~-----~V~l----v~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~ 71 (305)
T PRK05708 2 SMTWHILGA-GSLGSLWACRLARAGL-----PVRL----ILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPI 71 (305)
T ss_pred CceEEEECC-CHHHHHHHHHHHhCCC-----CeEE----EEechHHHHHHhhcCCeEEeeCCcceeeccCCCCccccccc
Confidence 479999996 9999999999987652 3666 35544455433221 1000000000111212223345688
Q ss_pred cEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Cceeccc
Q 013619 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALT 248 (439)
Q Consensus 174 DiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvig~gt 248 (439)
|+||++. |.. + ..+..+.+..+.+++..|+.+-|=++..-.+. +. ++. +++++.+
T Consensus 72 D~viv~v----K~~-----------~-~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~-~~---~~~~~v~~g~~ 127 (305)
T PRK05708 72 HRLLLAC----KAY-----------D-AEPAVASLAHRLAPGAELLLLQNGLGSQDAVA-AR---VPHARCIFASS 127 (305)
T ss_pred CEEEEEC----CHH-----------h-HHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHH-Hh---CCCCcEEEEEe
Confidence 9999983 210 1 22333445554467888999989887655443 22 333 5665443
No 128
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=95.93 E-value=0.051 Score=53.92 Aligned_cols=105 Identities=14% Similarity=0.003 Sum_probs=59.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEE-----Ee--cCccc
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-----IG--INPYE 168 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~-----i~--~~~~e 168 (439)
.+||.|+||+|+||++++..|+..+. ++... .++.+... ....+.... ....++. +. ....+
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~-----~V~~~----~r~~~~~~-~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~ 72 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY-----TVKAT----VRDPNDPK-KTEHLLALD-GAKERLHLFKANLLEEGSFDS 72 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC-----EEEEE----EcCCCchh-hHHHHHhcc-CCCCceEEEeccccCcchHHH
Confidence 46899999999999999999998763 24331 22222211 111111100 0001111 11 12335
Q ss_pred ccCCCcEEEEeCCcCCCC-CCchhhhHHHHHHHHHHHHHHHHhh
Q 013619 169 LFEDAEWALLIGAKPRGP-GMERAGLLDINGQIFAEQGKALNAV 211 (439)
Q Consensus 169 al~dADiVIitag~~~kp-g~~r~~ll~~N~~ii~~i~~~i~~~ 211 (439)
+++++|+||..|+..... .....+.++.|+.-...+.+.+.+.
T Consensus 73 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~ 116 (322)
T PLN02662 73 VVDGCEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKV 116 (322)
T ss_pred HHcCCCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhC
Confidence 678899999998753211 1122356777888888888877663
No 129
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=95.90 E-value=0.024 Score=57.13 Aligned_cols=109 Identities=21% Similarity=0.201 Sum_probs=65.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHH---HHhcccCCCCccEEEecCcccccCCC
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM---ELEDSLFPLLREVKIGINPYELFEDA 173 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~---DL~~~~~~~~~~v~i~~~~~eal~dA 173 (439)
|||+|+|| |.||+.+++.|.+.+ .. +.+. -+. ++++.+-. .+.+.. ...........+.+....+
T Consensus 1 mkI~IlGa-GAvG~l~g~~L~~~g-~~----V~~~----~R~-~~~~~l~~~GL~i~~~~-~~~~~~~~~~~~~~~~~~~ 68 (307)
T COG1893 1 MKILILGA-GAIGSLLGARLAKAG-HD----VTLL----VRS-RRLEALKKKGLRIEDEG-GNFTTPVVAATDAEALGPA 68 (307)
T ss_pred CeEEEECC-cHHHHHHHHHHHhCC-Ce----EEEE----ecH-HHHHHHHhCCeEEecCC-CccccccccccChhhcCCC
Confidence 79999995 999999999999877 21 4331 122 22332211 111111 1001123345567788899
Q ss_pred cEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHH
Q 013619 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLK 234 (439)
Q Consensus 174 DiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~k 234 (439)
|+||++. |..+ ..+..+.+..+..++.+|+.+=|=....- .+.+
T Consensus 69 Dlviv~v----Ka~q------------~~~al~~l~~~~~~~t~vl~lqNG~g~~e-~l~~ 112 (307)
T COG1893 69 DLVIVTV----KAYQ------------LEEALPSLAPLLGPNTVVLFLQNGLGHEE-ELRK 112 (307)
T ss_pred CEEEEEe----cccc------------HHHHHHHhhhcCCCCcEEEEEeCCCcHHH-HHHH
Confidence 9999983 2211 33445556666667888998888887665 3433
No 130
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.87 E-value=0.035 Score=49.27 Aligned_cols=75 Identities=19% Similarity=0.202 Sum_probs=50.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (439)
+..+|.|+|+ |.+|..++..|...+ . ..+.+ .|++.++++..+.++.... ... ...+..+.++++|
T Consensus 18 ~~~~i~iiG~-G~~g~~~a~~l~~~g-~---~~v~v----~~r~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~D 83 (155)
T cd01065 18 KGKKVLILGA-GGAARAVAYALAELG-A---AKIVI----VNRTLEKAKALAERFGELG----IAI-AYLDLEELLAEAD 83 (155)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCC-C---CEEEE----EcCCHHHHHHHHHHHhhcc----cce-eecchhhccccCC
Confidence 3579999996 999999999998765 2 12555 4677777776666554210 011 1234556689999
Q ss_pred EEEEeCCcC
Q 013619 175 WALLIGAKP 183 (439)
Q Consensus 175 iVIitag~~ 183 (439)
+||++...+
T Consensus 84 vvi~~~~~~ 92 (155)
T cd01065 84 LIINTTPVG 92 (155)
T ss_pred EEEeCcCCC
Confidence 999986543
No 131
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=95.87 E-value=0.093 Score=52.52 Aligned_cols=116 Identities=14% Similarity=0.056 Sum_probs=62.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcc----cccC-
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY----ELFE- 171 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~----eal~- 171 (439)
|||.|+||+|.||.+++..|+..+. .+.+. ++..+........+.+.......-+..-..+. ++++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~-----~V~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 71 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH-----DVVIL----DNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHD 71 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC-----eEEEE----ecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhc
Confidence 6899999999999999999997652 24331 22111111111111111000000011101112 2233
Q ss_pred -CCcEEEEeCCcCCCC--CCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 172 -DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 172 -dADiVIitag~~~kp--g~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
++|+||.+++..... .....+.+..|......+.+.+++. +- ..||.++.
T Consensus 72 ~~~d~vvh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~~v~~Ss 124 (338)
T PRK10675 72 HAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NV-KNLIFSSS 124 (338)
T ss_pred CCCCEEEECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHc-CC-CEEEEecc
Confidence 589999988754311 1233567788888888888888875 22 24555554
No 132
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.86 E-value=0.017 Score=52.54 Aligned_cols=90 Identities=19% Similarity=0.164 Sum_probs=58.5
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEe-------cCcccccC
Q 013619 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-------INPYELFE 171 (439)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~-------~~~~eal~ 171 (439)
|.|+||+|++|..++..|+..+. +|.+ .-++.++++. . + .+++. ....++++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~-----~V~~----~~R~~~~~~~-----~----~---~~~~~~~d~~d~~~~~~al~ 59 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH-----EVTA----LVRSPSKAED-----S----P---GVEIIQGDLFDPDSVKAALK 59 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS-----EEEE----EESSGGGHHH-----C----T---TEEEEESCTTCHHHHHHHHT
T ss_pred eEEECCCChHHHHHHHHHHHCCC-----EEEE----EecCchhccc-----c----c---ccccceeeehhhhhhhhhhh
Confidence 78999999999999999998872 2444 2455565543 1 1 12211 11356788
Q ss_pred CCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeC
Q 013619 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (439)
Q Consensus 172 dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvt 222 (439)
++|.||.+.|.+.+ + ...++.+.+.+++. +.. .+++++
T Consensus 60 ~~d~vi~~~~~~~~------~-----~~~~~~~~~a~~~~-~~~-~~v~~s 97 (183)
T PF13460_consen 60 GADAVIHAAGPPPK------D-----VDAAKNIIEAAKKA-GVK-RVVYLS 97 (183)
T ss_dssp TSSEEEECCHSTTT------H-----HHHHHHHHHHHHHT-TSS-EEEEEE
T ss_pred hcchhhhhhhhhcc------c-----cccccccccccccc-ccc-cceeee
Confidence 99999999875543 1 56677788888774 332 444444
No 133
>PRK08507 prephenate dehydrogenase; Validated
Probab=95.81 E-value=0.09 Score=51.79 Aligned_cols=66 Identities=20% Similarity=0.287 Sum_probs=40.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (439)
|||+||| .|.+|..++..|...+.. ..|.. .|++.++++. +.++ .. +.... +.+++.+||+|
T Consensus 1 m~I~iIG-~G~mG~sla~~l~~~g~~---~~v~~----~d~~~~~~~~-~~~~-----g~---~~~~~-~~~~~~~aD~V 62 (275)
T PRK08507 1 MKIGIIG-LGLMGGSLGLALKEKGLI---SKVYG----YDHNELHLKK-ALEL-----GL---VDEIV-SFEELKKCDVI 62 (275)
T ss_pred CEEEEEc-cCHHHHHHHHHHHhcCCC---CEEEE----EcCCHHHHHH-HHHC-----CC---CcccC-CHHHHhcCCEE
Confidence 5899999 599999999999987642 12433 4666565442 2221 11 11112 23335569999
Q ss_pred EEeC
Q 013619 177 LLIG 180 (439)
Q Consensus 177 Iita 180 (439)
|++.
T Consensus 63 ilav 66 (275)
T PRK08507 63 FLAI 66 (275)
T ss_pred EEeC
Confidence 9984
No 134
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=95.79 E-value=0.063 Score=53.53 Aligned_cols=117 Identities=15% Similarity=0.008 Sum_probs=63.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEE-----e--cCcc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-----G--INPY 167 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i-----~--~~~~ 167 (439)
..++|.|+||+|.||++++..|+..+. .+.+. .++.+.+... ..+.... ....++.. + .+-.
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~-----~V~~~----~r~~~~~~~~-~~~~~~~-~~~~~~~~~~~D~~d~~~~~ 72 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGY-----TINAT----VRDPKDRKKT-DHLLALD-GAKERLKLFKADLLDEGSFE 72 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC-----EEEEE----EcCCcchhhH-HHHHhcc-CCCCceEEEeCCCCCchHHH
Confidence 457899999999999999999998763 24332 2222222211 1111000 00011111 1 1123
Q ss_pred cccCCCcEEEEeCCcCCCC-C-CchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 168 ELFEDAEWALLIGAKPRGP-G-MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 168 eal~dADiVIitag~~~kp-g-~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
+.+++.|+||.+||..... . ..-...+..|..-...+.+.+.++ ...+.||+++.
T Consensus 73 ~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~-~~~~~iv~~SS 129 (325)
T PLN02989 73 LAIDGCETVFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKV-SSVKRVILTSS 129 (325)
T ss_pred HHHcCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHc-CCceEEEEecc
Confidence 4567899999998853211 1 112345677877777777777664 22235555543
No 135
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.78 E-value=0.05 Score=54.20 Aligned_cols=119 Identities=17% Similarity=0.183 Sum_probs=81.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEE-ecC---------
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--------- 165 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i-~~~--------- 165 (439)
.+.|.|.||+..||.++|+.|+..+.- ++| .-+..++++-++.++.....+. ++.+ ..|
T Consensus 12 ~kvVvITGASsGIG~~lA~~la~~G~~-----l~l----var~~rrl~~v~~~l~~~~~~~--~v~~~~~Dvs~~~~~~~ 80 (282)
T KOG1205|consen 12 GKVVLITGASSGIGEALAYELAKRGAK-----LVL----VARRARRLERVAEELRKLGSLE--KVLVLQLDVSDEESVKK 80 (282)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCCc-----eEE----eehhhhhHHHHHHHHHHhCCcC--ccEEEeCccCCHHHHHH
Confidence 357999999999999999999998852 334 3566778887778887654222 2222 111
Q ss_pred ----cccccCCCcEEEEeCCcCCCCCC-------chhhhHHHH----HHHHHHHHHHHHhhcCCCeEEEEeCCchhHH
Q 013619 166 ----PYELFEDAEWALLIGAKPRGPGM-------ERAGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (439)
Q Consensus 166 ----~~eal~dADiVIitag~~~kpg~-------~r~~ll~~N----~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~ 228 (439)
....+.+.|+.|.-||..+ .+. .....++.| +-+.+...+.|++. + +|.|++++....-+
T Consensus 81 ~~~~~~~~fg~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r-~-~GhIVvisSiaG~~ 155 (282)
T KOG1205|consen 81 FVEWAIRHFGRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKR-N-DGHIVVISSIAGKM 155 (282)
T ss_pred HHHHHHHhcCCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhc-C-CCeEEEEecccccc
Confidence 1246788999999999877 332 123345544 56677778888886 4 79999998876544
No 136
>PLN02214 cinnamoyl-CoA reductase
Probab=95.70 E-value=0.064 Score=54.44 Aligned_cols=110 Identities=12% Similarity=0.060 Sum_probs=64.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHH-HHHHHHhcccCCCCccEEE-e------cCc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPLLREVKI-G------INP 166 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~-g~a~DL~~~~~~~~~~v~i-~------~~~ 166 (439)
++++|.|+||+|+||++++..|+..+. .|... .++.+... ....++... ..++.+ . ...
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~d~~~~ 75 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGY-----TVKGT----VRNPDDPKNTHLRELEGG----KERLILCKADLQDYEAL 75 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcC-----EEEEE----eCCchhhhHHHHHHhhCC----CCcEEEEecCcCChHHH
Confidence 356899999999999999999998763 24331 23322221 111122211 011111 1 122
Q ss_pred ccccCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeC
Q 013619 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (439)
Q Consensus 167 ~eal~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvt 222 (439)
.++++++|+||.+|+... ....+.+..|+.-...+.+.+.+. +.. .||.++
T Consensus 76 ~~~~~~~d~Vih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~-~v~-r~V~~S 126 (342)
T PLN02214 76 KAAIDGCDGVFHTASPVT---DDPEQMVEPAVNGAKFVINAAAEA-KVK-RVVITS 126 (342)
T ss_pred HHHHhcCCEEEEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhc-CCC-EEEEec
Confidence 456789999999987532 223456777888788888877774 333 444444
No 137
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=95.67 E-value=0.14 Score=50.99 Aligned_cols=109 Identities=18% Similarity=0.236 Sum_probs=64.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecC-cccccCCCc
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN-PYELFEDAE 174 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~-~~eal~dAD 174 (439)
++||+|+| .|.+|..++..|...+.. +.+ ++.|.+.+.++ .+.+|. .. -+.+.+ ..++.++||
T Consensus 3 ~~~v~IvG-~GliG~s~a~~l~~~g~~-----v~i--~g~d~~~~~~~-~a~~lg-v~------d~~~~~~~~~~~~~aD 66 (279)
T COG0287 3 SMKVGIVG-LGLMGGSLARALKEAGLV-----VRI--IGRDRSAATLK-AALELG-VI------DELTVAGLAEAAAEAD 66 (279)
T ss_pred CcEEEEEC-CchHHHHHHHHHHHcCCe-----EEE--EeecCcHHHHH-HHhhcC-cc------cccccchhhhhcccCC
Confidence 57999999 599999999999988763 223 34565544433 222121 10 011122 268889999
Q ss_pred EEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHC
Q 013619 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA 236 (439)
Q Consensus 175 iVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~k~s 236 (439)
+||++.- +....++.+++..+..++++|.-++.-=......+.++.
T Consensus 67 ~VivavP----------------i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~ 112 (279)
T COG0287 67 LVIVAVP----------------IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYL 112 (279)
T ss_pred EEEEecc----------------HHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhc
Confidence 9999832 222333334444333578888888765544444454443
No 138
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=95.66 E-value=0.13 Score=52.14 Aligned_cols=128 Identities=13% Similarity=0.172 Sum_probs=77.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhc----CCCCCCCceEEEecccccchh--hHHHHHHHHhcccCCC------CccEE
Q 013619 94 KKMVNIAVSGAAGMIANHLLFKLAAG----EVLGPDQPIALKLLGSERSLQ--ALEGVAMELEDSLFPL------LREVK 161 (439)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~----~l~~~~~~I~L~l~~~d~~~e--~l~g~a~DL~~~~~~~------~~~v~ 161 (439)
+.+.||+||| +|+=|++++..+... ..|. ..+..+.++...+.+ +|.-+... .|--.-| ..++.
T Consensus 19 ~~~~kV~ivG-sGnWGsaiaki~~~n~~~~~~f~--~~Vrmwv~ee~i~~~~~~L~eiIN~-~heN~KYlpg~~lP~Nvv 94 (372)
T KOG2711|consen 19 RDPLKVCIVG-SGNWGSAIAKIVGENVKEFPIFD--PQVRMWVFEEEINGEAEKLTEIINS-RHENVKYLPGIKLPENVV 94 (372)
T ss_pred cCceEEEEEc-cChHHHHHHHHHhhhhhhccccC--ceeeEEEeccccCChhHHHHHHhcc-ccccccccCCccCCCCeE
Confidence 4568999999 599999999977643 2233 346666555444432 22221111 1111011 24677
Q ss_pred EecCcccccCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCC--------c-hhHHHHHH
Q 013619 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN--------P-CNTNALIC 232 (439)
Q Consensus 162 i~~~~~eal~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtN--------P-vd~~t~i~ 232 (439)
..+|..++++|||++|+. .| -+.+.+++++|..+-.|++..|-.+. | +.+++.++
T Consensus 95 Av~dl~ea~~dADilvf~--vP--------------hQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI 158 (372)
T KOG2711|consen 95 AVPDLVEAAKDADILVFV--VP--------------HQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQII 158 (372)
T ss_pred ecchHHHHhccCCEEEEe--CC--------------hhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHH
Confidence 888999999999999987 23 25566677777766556665554432 2 35566666
Q ss_pred HHHCCCCCCC
Q 013619 233 LKNAPSIPAK 242 (439)
Q Consensus 233 ~k~s~~~p~k 242 (439)
.+.. ++|..
T Consensus 159 ~~~l-gI~~~ 167 (372)
T KOG2711|consen 159 HRAL-GIPCS 167 (372)
T ss_pred HHHh-CCCce
Confidence 6655 56544
No 139
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=95.65 E-value=0.059 Score=57.58 Aligned_cols=105 Identities=20% Similarity=0.224 Sum_probs=63.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccC---C
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE---D 172 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~---d 172 (439)
+.+|+||| .|.+|.++|..|+..+. .|.+ .|++.++.+......... ...+....+..+.++ +
T Consensus 1 ~~~IgvIG-LG~MG~~lA~nL~~~G~-----~V~v----~dr~~~~~~~l~~~~~~~----g~~i~~~~s~~e~v~~l~~ 66 (470)
T PTZ00142 1 MSDIGLIG-LAVMGQNLALNIASRGF-----KISV----YNRTYEKTEEFVKKAKEG----NTRVKGYHTLEELVNSLKK 66 (470)
T ss_pred CCEEEEEe-EhHHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHhhhhc----CCcceecCCHHHHHhcCCC
Confidence 45899999 59999999999998773 2555 467777766543321110 012333444444444 5
Q ss_pred CcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCC--chhHHH
Q 013619 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN--PCNTNA 229 (439)
Q Consensus 173 ADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtN--Pvd~~t 229 (439)
+|+||++.- + .+.+.++.+.+..+..++.+||..+| |-|+.-
T Consensus 67 ~d~Iil~v~----~-----------~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~ 110 (470)
T PTZ00142 67 PRKVILLIK----A-----------GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTER 110 (470)
T ss_pred CCEEEEEeC----C-----------hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHH
Confidence 898887622 1 23344444455544457788999997 444443
No 140
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=95.62 E-value=0.044 Score=54.83 Aligned_cols=96 Identities=13% Similarity=0.102 Sum_probs=56.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (439)
|||+||| .|.+|.+++..|...+. +|.+ .|++.++++..... ...... -..+..+.+.++|+|
T Consensus 1 M~Ig~IG-lG~mG~~la~~L~~~g~-----~V~~----~dr~~~~~~~l~~~---g~~~~~----s~~~~~~~~~~~dvI 63 (298)
T TIGR00872 1 MQLGLIG-LGRMGANIVRRLAKRGH-----DCVG----YDHDQDAVKAMKED---RTTGVA----NLRELSQRLSAPRVV 63 (298)
T ss_pred CEEEEEc-chHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHc---CCcccC----CHHHHHhhcCCCCEE
Confidence 5899999 59999999999988652 3555 46776766544321 110000 001112345789999
Q ss_pred EEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 013619 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (439)
Q Consensus 177 Iitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPv 225 (439)
|++.- ++ .+.++.+.+.....++.+||..+|..
T Consensus 64 i~~vp----~~------------~~~~v~~~l~~~l~~g~ivid~st~~ 96 (298)
T TIGR00872 64 WVMVP----HG------------IVDAVLEELAPTLEKGDIVIDGGNSY 96 (298)
T ss_pred EEEcC----ch------------HHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 99721 11 23333334444334567888887763
No 141
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=95.62 E-value=0.041 Score=54.63 Aligned_cols=63 Identities=10% Similarity=0.149 Sum_probs=43.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEEE
Q 013619 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (439)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVI 177 (439)
||+||| .|.+|..++..|+..+. +|.+ .|++.++++.. .+.. .....+..+++++||+||
T Consensus 1 ~IgvIG-~G~mG~~iA~~l~~~G~-----~V~~----~dr~~~~~~~~----~~~g------~~~~~~~~~~~~~aDivi 60 (291)
T TIGR01505 1 KVGFIG-LGIMGSPMSINLAKAGY-----QLHV----TTIGPEVADEL----LAAG------AVTAETARQVTEQADVIF 60 (291)
T ss_pred CEEEEE-ecHHHHHHHHHHHHCCC-----eEEE----EcCCHHHHHHH----HHCC------CcccCCHHHHHhcCCEEE
Confidence 699999 59999999999997663 2555 46776665532 2111 112345668899999999
Q ss_pred EeC
Q 013619 178 LIG 180 (439)
Q Consensus 178 ita 180 (439)
++.
T Consensus 61 ~~v 63 (291)
T TIGR01505 61 TMV 63 (291)
T ss_pred Eec
Confidence 983
No 142
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=95.58 E-value=0.028 Score=54.70 Aligned_cols=96 Identities=17% Similarity=0.202 Sum_probs=59.8
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEEEE
Q 013619 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALL 178 (439)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVIi 178 (439)
|.|+||+|+||++++..|+..+. +|.. .+++.+....... ... ... ......++++++|+||.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~~~~~---~~~----~~~-~~~~~~~~~~~~D~Vvh 63 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGH-----EVTI----LTRSPPAGANTKW---EGY----KPW-APLAESEALEGADAVIN 63 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCC-----EEEE----EeCCCCCCCcccc---eee----ecc-cccchhhhcCCCCEEEE
Confidence 57999999999999999988652 2433 2343333211100 000 000 11334578899999999
Q ss_pred eCCcCCCCC--C--chhhhHHHHHHHHHHHHHHHHhh
Q 013619 179 IGAKPRGPG--M--ERAGLLDINGQIFAEQGKALNAV 211 (439)
Q Consensus 179 tag~~~kpg--~--~r~~ll~~N~~ii~~i~~~i~~~ 211 (439)
+++.+...+ . ....+.+.|+.....+.+.+.+.
T Consensus 64 ~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~ 100 (292)
T TIGR01777 64 LAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAA 100 (292)
T ss_pred CCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 988654322 1 23456677888888998888875
No 143
>PRK08267 short chain dehydrogenase; Provisional
Probab=95.57 E-value=0.044 Score=52.72 Aligned_cols=117 Identities=18% Similarity=0.094 Sum_probs=63.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEec--Ccccc----
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYEL---- 169 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~--~~~ea---- 169 (439)
|++|.|+||+|.+|.+++..|+..+. .+.+ .+++.+.++....++.... .......++. +-.+.
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~~~~~D~~~~~~v~~~~~~~ 70 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGW-----RVGA----YDINEAGLAALAAELGAGN-AWTGALDVTDRAAWDAALADF 70 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHhcCCc-eEEEEecCCCHHHHHHHHHHH
Confidence 35799999999999999999998763 2444 3566666665544443110 0001111211 01111
Q ss_pred ----cCCCcEEEEeCCcCCCCCC------chhhhHHHHHHH----HHHHHHHHHhhcCCCeEEEEeCCc
Q 013619 170 ----FEDAEWALLIGAKPRGPGM------ERAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 170 ----l~dADiVIitag~~~kpg~------~r~~ll~~N~~i----i~~i~~~i~~~a~p~aivIvvtNP 224 (439)
....|+||.++|....... +-...+..|..- .+.+.+.+++ .+.+.+++++-.
T Consensus 71 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~~~~iv~isS~ 137 (260)
T PRK08267 71 AAATGGRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKA--TPGARVINTSSA 137 (260)
T ss_pred HHHcCCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh--CCCCEEEEeCch
Confidence 2356999999886532111 122345555543 3333444444 245666666654
No 144
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=95.56 E-value=0.056 Score=51.75 Aligned_cols=115 Identities=12% Similarity=0.149 Sum_probs=62.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEec---------Ccc
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---------NPY 167 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~---------~~~ 167 (439)
|+|.|+||+|.+|.+++..|+..+. .+.+ .+++.++++....++.... ......+.. ...
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~--~~~~~Dl~~~~~i~~~~~~~~ 69 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH-----KVIA----TGRRQERLQELKDELGDNL--YIAQLDVRNRAAIEEMLASLP 69 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhccce--EEEEecCCCHHHHHHHHHHHH
Confidence 6899999999999999999998663 2544 3666666654433332110 000011110 011
Q ss_pred cccCCCcEEEEeCCcCC--CCC--Cch---hhhHHHHHHH----HHHHHHHHHhhcCCCeEEEEeCCc
Q 013619 168 ELFEDAEWALLIGAKPR--GPG--MER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 168 eal~dADiVIitag~~~--kpg--~~r---~~ll~~N~~i----i~~i~~~i~~~a~p~aivIvvtNP 224 (439)
+.+.+.|+||..+|... .+- .+. ...++.|..- .+.+.+.+.+. ..+.+++++..
T Consensus 70 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~isS~ 135 (248)
T PRK10538 70 AEWRNIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVER--NHGHIINIGST 135 (248)
T ss_pred HHcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEECCc
Confidence 22347999999887532 221 122 2234444333 44555555542 34567776653
No 145
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=95.52 E-value=0.17 Score=51.26 Aligned_cols=114 Identities=11% Similarity=0.035 Sum_probs=60.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEE-ecC------cc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN------PY 167 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i-~~~------~~ 167 (439)
..|||.|+||+|.||++++..|+..+. .+.+ .+++.+.......++.. ..++.. ..| -.
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~-----~V~~----~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~ 74 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGY-----TVHA----TLRDPAKSLHLLSKWKE-----GDRLRLFRADLQEEGSFD 74 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCChHHHHHHHHhhcc-----CCeEEEEECCCCCHHHHH
Confidence 357999999999999999999998653 2433 23333333322222221 112222 111 13
Q ss_pred cccCCCcEEEEeCCcCCCC---C-Cch-----hhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 168 ELFEDAEWALLIGAKPRGP---G-MER-----AGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 168 eal~dADiVIitag~~~kp---g-~~r-----~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
+.+++.|+||.+|+..... . .+- ...++.|..-...+.+.+.+. ..-..||.++.
T Consensus 75 ~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~-~~~~~~v~~SS 138 (353)
T PLN02896 75 EAVKGCDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKS-KTVKRVVFTSS 138 (353)
T ss_pred HHHcCCCEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhc-CCccEEEEEec
Confidence 4567899999998764211 1 111 123333445556666666553 21235555554
No 146
>PRK06545 prephenate dehydrogenase; Validated
Probab=95.51 E-value=0.11 Score=53.54 Aligned_cols=68 Identities=18% Similarity=0.234 Sum_probs=41.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (439)
.||+||| .|.+|.+++..|...+. ++.++ +.|.+...+ ...... ... -...++..+++++||+|
T Consensus 1 ~~I~iIG-~GliG~siA~~L~~~G~-----~v~i~--~~~~~~~~~---~~a~~~---~~~--~~~~~~~~~~~~~aDlV 64 (359)
T PRK06545 1 RTVLIVG-LGLIGGSLALAIKAAGP-----DVFII--GYDPSAAQL---ARALGF---GVI--DELAADLQRAAAEADLI 64 (359)
T ss_pred CeEEEEE-eCHHHHHHHHHHHhcCC-----CeEEE--EeCCCHHHH---HHHhcC---CCC--cccccCHHHHhcCCCEE
Confidence 3799999 59999999999988764 24443 234332221 111111 110 11234456778999999
Q ss_pred EEeC
Q 013619 177 LLIG 180 (439)
Q Consensus 177 Iita 180 (439)
|++.
T Consensus 65 ilav 68 (359)
T PRK06545 65 VLAV 68 (359)
T ss_pred EEeC
Confidence 9983
No 147
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=95.51 E-value=0.046 Score=55.55 Aligned_cols=75 Identities=21% Similarity=0.174 Sum_probs=54.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCC
Q 013619 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (439)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (439)
+...+++|||+ |..|...+..+....-+ +.|.+ .|++.++++..+.++.+. ..++.+..+..+++++|
T Consensus 126 ~~~~~lgiiG~-G~qA~~~l~al~~~~~~---~~v~V----~~r~~~~~~~~~~~~~~~----g~~v~~~~~~~eav~~a 193 (325)
T TIGR02371 126 KDSSVLGIIGA-GRQAWTQLEALSRVFDL---EEVSV----YCRTPSTREKFALRASDY----EVPVRAATDPREAVEGC 193 (325)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCC---CEEEE----ECCCHHHHHHHHHHHHhh----CCcEEEeCCHHHHhccC
Confidence 34579999995 99999877666553222 34666 478888888887777632 22466677888999999
Q ss_pred cEEEEeC
Q 013619 174 EWALLIG 180 (439)
Q Consensus 174 DiVIita 180 (439)
|+|+++-
T Consensus 194 DiVitaT 200 (325)
T TIGR02371 194 DILVTTT 200 (325)
T ss_pred CEEEEec
Confidence 9999863
No 148
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=95.49 E-value=0.038 Score=54.70 Aligned_cols=111 Identities=13% Similarity=0.073 Sum_probs=64.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEe--cCcccccCCCc
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFEDAE 174 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~--~~~~eal~dAD 174 (439)
|||.|+||+|.+|.+++..|+..+. ++.. .+++.+.+.. +.+..... ....+. ....+.++++|
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~~----~~~~~~~~-~~~D~~~~~~l~~~~~~~d 66 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE-----EVRV----LVRPTSDRRN----LEGLDVEI-VEGDLRDPASLRKAVAGCR 66 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC-----EEEE----EEecCccccc----cccCCceE-EEeeCCCHHHHHHHHhCCC
Confidence 5899999999999999999998762 2433 2444333221 11110000 001111 11235677899
Q ss_pred EEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 175 iVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
+||..++.......+.....+.|+.-...+++.+.+. +- ..+|.++.
T Consensus 67 ~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~~v~~SS 113 (328)
T TIGR03466 67 ALFHVAADYRLWAPDPEEMYAANVEGTRNLLRAALEA-GV-ERVVYTSS 113 (328)
T ss_pred EEEEeceecccCCCCHHHHHHHHHHHHHHHHHHHHHh-CC-CeEEEEec
Confidence 9999876432222344556777888788888877764 22 24555554
No 149
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=95.49 E-value=0.1 Score=53.88 Aligned_cols=72 Identities=11% Similarity=0.139 Sum_probs=43.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecC-cccccCCCcE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN-PYELFEDAEW 175 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~-~~eal~dADi 175 (439)
+||+|+||+|.||..+...|....-|.. ..+.++.... ..|....+ ......+..- +.+++++.|+
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~---~~~~~~ss~~----s~g~~~~f------~~~~~~v~~~~~~~~~~~vDi 67 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDA---IRPVFFSTSQ----LGQAAPSF------GGTTGTLQDAFDIDALKALDI 67 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCcc---ccEEEEEchh----hCCCcCCC------CCCcceEEcCcccccccCCCE
Confidence 4899999999999999998884444432 2343332222 12111111 1122334332 3358999999
Q ss_pred EEEeCC
Q 013619 176 ALLIGA 181 (439)
Q Consensus 176 VIitag 181 (439)
|++++|
T Consensus 68 vffa~g 73 (366)
T TIGR01745 68 IITCQG 73 (366)
T ss_pred EEEcCC
Confidence 999876
No 150
>PRK07102 short chain dehydrogenase; Provisional
Probab=95.47 E-value=0.12 Score=49.20 Aligned_cols=46 Identities=30% Similarity=0.361 Sum_probs=33.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHh
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~ 150 (439)
|++|.|+||+|.+|.+++..|+..+. .+.+ .+++.++++....++.
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~-----~Vi~----~~r~~~~~~~~~~~~~ 46 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGA-----RLYL----AARDVERLERLADDLR 46 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 46899999999999999999998763 2444 3566666665555554
No 151
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=95.46 E-value=0.079 Score=52.23 Aligned_cols=70 Identities=24% Similarity=0.378 Sum_probs=43.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (439)
||||+|||+ |.+|..++..|...+. +. +.+.+ +|++.++++..+.++ ......+..+.+.++|+
T Consensus 1 mmrIgIIG~-G~iG~~ia~~l~~~~~-~~-elv~v----~d~~~~~a~~~a~~~---------~~~~~~~~~ell~~~Dv 64 (265)
T PRK13304 1 MLKIGIVGC-GAIASLITKAILSGRI-NA-ELYAF----YDRNLEKAENLASKT---------GAKACLSIDELVEDVDL 64 (265)
T ss_pred CCEEEEECc-cHHHHHHHHHHHcCCC-Ce-EEEEE----ECCCHHHHHHHHHhc---------CCeeECCHHHHhcCCCE
Confidence 479999995 9999999998876531 11 11222 466666655433321 11233444555589999
Q ss_pred EEEeCC
Q 013619 176 ALLIGA 181 (439)
Q Consensus 176 VIitag 181 (439)
|++++.
T Consensus 65 Vvi~a~ 70 (265)
T PRK13304 65 VVECAS 70 (265)
T ss_pred EEEcCC
Confidence 999853
No 152
>PLN02240 UDP-glucose 4-epimerase
Probab=95.45 E-value=0.22 Score=50.15 Aligned_cols=118 Identities=13% Similarity=0.084 Sum_probs=62.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEe---cCccc---
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG---INPYE--- 168 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~---~~~~e--- 168 (439)
+.+||.|+||+|+||.+++..|+..+. +|.+ + ++...........+.+.......+++.. ..+.+
T Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-----~V~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~ 74 (352)
T PLN02240 4 MGRTILVTGGAGYIGSHTVLQLLLAGY-----KVVV--I--DNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALE 74 (352)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-----EEEE--E--eCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHH
Confidence 346999999999999999999997652 2433 1 2211111101111111100000111111 11222
Q ss_pred -ccC--CCcEEEEeCCcCCC-CC-CchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 169 -LFE--DAEWALLIGAKPRG-PG-MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 169 -al~--dADiVIitag~~~k-pg-~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
.++ ++|+||.+++.... .. ......+..|......+.+.+.+. +.. .+|.++.
T Consensus 75 ~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~-~~v~~Ss 132 (352)
T PLN02240 75 KVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKH-GCK-KLVFSSS 132 (352)
T ss_pred HHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHc-CCC-EEEEEcc
Confidence 222 68999999876421 11 233456788888888888877764 222 4555554
No 153
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=95.41 E-value=0.06 Score=54.54 Aligned_cols=117 Identities=13% Similarity=0.007 Sum_probs=63.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCC-ccEEEec--CcccccCC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI--NPYELFED 172 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~-~~v~i~~--~~~eal~d 172 (439)
.++|.|+||+|+||++++..|+..+. .|.. .+++..........+.... ... ....++. +..+.+++
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~ 73 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGA-----EVYG----YSLDPPTSPNLFELLNLAK-KIEDHFGDIRDAAKLRKAIAE 73 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCC-----EEEE----EeCCCccchhHHHHHhhcC-CceEEEccCCCHHHHHHHHhh
Confidence 46899999999999999999998652 2433 2333332221111121000 000 0001110 11123333
Q ss_pred --CcEEEEeCCcCCCC--CCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 173 --AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 173 --ADiVIitag~~~kp--g~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
.|+||.+++.+... ..+-...+..|+.-...+.+.+.+. +....+|.++.
T Consensus 74 ~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~-~~~~~iv~~SS 127 (349)
T TIGR02622 74 FKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAI-GSVKAVVNVTS 127 (349)
T ss_pred cCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhc-CCCCEEEEEec
Confidence 59999998854321 1123456677887788888877664 32345666655
No 154
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=95.39 E-value=0.073 Score=52.84 Aligned_cols=64 Identities=11% Similarity=0.196 Sum_probs=43.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (439)
+||+||| .|.+|..++..|+..+. ++.+ .|++.++++.. ... .+....+..+.+++||+|
T Consensus 3 ~~IgviG-~G~mG~~~a~~l~~~g~-----~v~~----~d~~~~~~~~~----~~~------g~~~~~~~~e~~~~~d~v 62 (296)
T PRK11559 3 MKVGFIG-LGIMGKPMSKNLLKAGY-----SLVV----YDRNPEAVAEV----IAA------GAETASTAKAVAEQCDVI 62 (296)
T ss_pred ceEEEEc-cCHHHHHHHHHHHHCCC-----eEEE----EcCCHHHHHHH----HHC------CCeecCCHHHHHhcCCEE
Confidence 6899999 59999999999987652 2444 36666555432 111 122334456778999999
Q ss_pred EEeC
Q 013619 177 LLIG 180 (439)
Q Consensus 177 Iita 180 (439)
|++.
T Consensus 63 i~~v 66 (296)
T PRK11559 63 ITML 66 (296)
T ss_pred EEeC
Confidence 9984
No 155
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=95.37 E-value=0.058 Score=53.88 Aligned_cols=66 Identities=15% Similarity=0.247 Sum_probs=45.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (439)
+||++|| .|.+|+.+|..|+..+. ++.+ .|++.++.... +...- ........++.++||+|
T Consensus 1 ~kIafIG-LG~MG~pmA~~L~~aG~-----~v~v----~~r~~~ka~~~---~~~~G------a~~a~s~~eaa~~aDvV 61 (286)
T COG2084 1 MKIAFIG-LGIMGSPMAANLLKAGH-----EVTV----YNRTPEKAAEL---LAAAG------ATVAASPAEAAAEADVV 61 (286)
T ss_pred CeEEEEc-CchhhHHHHHHHHHCCC-----EEEE----EeCChhhhhHH---HHHcC------CcccCCHHHHHHhCCEE
Confidence 5899999 69999999999999874 2444 36666663222 22211 12334567999999999
Q ss_pred EEeCC
Q 013619 177 LLIGA 181 (439)
Q Consensus 177 Iitag 181 (439)
|++-.
T Consensus 62 itmv~ 66 (286)
T COG2084 62 ITMLP 66 (286)
T ss_pred EEecC
Confidence 99743
No 156
>PLN02256 arogenate dehydrogenase
Probab=95.35 E-value=0.24 Score=49.92 Aligned_cols=93 Identities=18% Similarity=0.160 Sum_probs=52.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCccccc-CC
Q 013619 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-ED 172 (439)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal-~d 172 (439)
.+++||+||| .|.+|..++..|...+. .|.. +|++.. ...+.++ . +....+..+.+ .+
T Consensus 34 ~~~~kI~IIG-~G~mG~slA~~L~~~G~-----~V~~----~d~~~~--~~~a~~~-----g----v~~~~~~~e~~~~~ 92 (304)
T PLN02256 34 SRKLKIGIVG-FGNFGQFLAKTFVKQGH-----TVLA----TSRSDY--SDIAAEL-----G----VSFFRDPDDFCEEH 92 (304)
T ss_pred CCCCEEEEEe-eCHHHHHHHHHHHhCCC-----EEEE----EECccH--HHHHHHc-----C----CeeeCCHHHHhhCC
Confidence 3567999999 59999999999987542 2443 344432 2223322 1 11223333444 47
Q ss_pred CcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHH-HhhcCCCeEEEEeCC
Q 013619 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKAL-NAVASRNVKVIVVGN 223 (439)
Q Consensus 173 ADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i-~~~a~p~aivIvvtN 223 (439)
+|+||++.. + ..+.++.+.+ ..+..++++|+.++.
T Consensus 93 aDvVilavp----~------------~~~~~vl~~l~~~~l~~~~iviDv~S 128 (304)
T PLN02256 93 PDVVLLCTS----I------------LSTEAVLRSLPLQRLKRSTLFVDVLS 128 (304)
T ss_pred CCEEEEecC----H------------HHHHHHHHhhhhhccCCCCEEEecCC
Confidence 999999732 1 1233333333 222257788887777
No 157
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.30 E-value=0.11 Score=56.17 Aligned_cols=127 Identities=20% Similarity=0.144 Sum_probs=85.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCC------ccEEEecCc
Q 013619 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL------REVKIGINP 166 (439)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~------~~v~i~~~~ 166 (439)
+-+...|-|.||+|++|+.+...++..+. .+|.+ .+.++-++..+.++|.+.. +.. .+++=...-
T Consensus 247 ~~~gK~vLVTGagGSiGsel~~qil~~~p----~~i~l----~~~~E~~~~~i~~el~~~~-~~~~~~~~igdVrD~~~~ 317 (588)
T COG1086 247 MLTGKTVLVTGGGGSIGSELCRQILKFNP----KEIIL----FSRDEYKLYLIDMELREKF-PELKLRFYIGDVRDRDRV 317 (588)
T ss_pred HcCCCEEEEeCCCCcHHHHHHHHHHhcCC----CEEEE----ecCchHHHHHHHHHHHhhC-CCcceEEEecccccHHHH
Confidence 44556899999999999999999998753 33655 4677778887888887642 211 112111224
Q ss_pred ccccCC--CcEEEEeCCcCCCCCCc--hhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeC----CchhHHH
Q 013619 167 YELFED--AEWALLIGAKPRGPGME--RAGLLDINGQIFAEQGKALNAVASRNVKVIVVG----NPCNTNA 229 (439)
Q Consensus 167 ~eal~d--ADiVIitag~~~kpg~~--r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvt----NPvd~~t 229 (439)
.+++++ .|+|+.+|..-.-|-+| =.+-...|+-=..+++++..+. +-...|.+-| ||.|+|.
T Consensus 318 ~~~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~-~V~~~V~iSTDKAV~PtNvmG 387 (588)
T COG1086 318 ERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKN-GVKKFVLISTDKAVNPTNVMG 387 (588)
T ss_pred HHHHhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHh-CCCEEEEEecCcccCCchHhh
Confidence 567888 99999998865555444 3456667766667777777665 4455555544 7877663
No 158
>PRK12746 short chain dehydrogenase; Provisional
Probab=95.22 E-value=0.32 Score=46.40 Aligned_cols=46 Identities=26% Similarity=0.297 Sum_probs=31.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHh
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~ 150 (439)
++|.|+||+|.+|.+++..|+..+. .+.+. ..++.+.++....++.
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G~-----~v~i~---~~r~~~~~~~~~~~~~ 52 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDGA-----LVAIH---YGRNKQAADETIREIE 52 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE---cCCCHHHHHHHHHHHH
Confidence 5899999999999999999988653 23331 2445555555544443
No 159
>PRK12939 short chain dehydrogenase; Provisional
Probab=95.20 E-value=0.22 Score=47.10 Aligned_cols=113 Identities=11% Similarity=0.102 Sum_probs=63.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEE-e--cCcccc---
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-G--INPYEL--- 169 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i-~--~~~~ea--- 169 (439)
.++|.|+||+|.||.+++..|+..+. .+.+ .+++.+++.....+++... .++.+ . ..+.+.
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~ 73 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGA-----TVAF----NDGLAAEARELAAALEAAG----GRAHAIAADLADPASVQR 73 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHH
Confidence 36899999999999999999998663 2444 3566666666666664321 11211 1 112221
Q ss_pred --------cCCCcEEEEeCCcCCC-C--CCch---hhhHHHHHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 170 --------FEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 170 --------l~dADiVIitag~~~k-p--g~~r---~~ll~~N~~----ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
+...|+||..+|.... + ..+. ...+..|.. +.+.+.+.+.+. ..+.+|+++.
T Consensus 74 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~g~iv~isS 143 (250)
T PRK12939 74 FFDAAAAALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDS--GRGRIVNLAS 143 (250)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCeEEEEECc
Confidence 2578999998876432 1 1111 112334433 334444444442 3567777765
No 160
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=95.19 E-value=0.26 Score=46.69 Aligned_cols=46 Identities=22% Similarity=0.241 Sum_probs=33.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHh
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~ 150 (439)
.++|.|+||+|.||.+++..|+..+. .+.+ .+++.+.+.....++.
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~-----~v~~----~~r~~~~~~~~~~~~~ 48 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGA-----KVAV----FDLNREAAEKVAADIR 48 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----ecCCHHHHHHHHHHHH
Confidence 46899999999999999999998763 2544 3555566555555554
No 161
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.18 E-value=0.15 Score=52.70 Aligned_cols=73 Identities=11% Similarity=0.182 Sum_probs=42.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEe-cCcccccCCCc
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAE 174 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~dAD 174 (439)
|+||+|+||+|.||..+...|+...-+.. .++.+ +... +..+...++.. ....+. ..+.++++++|
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~-~~l~~--~ss~----~sg~~~~~f~g------~~~~v~~~~~~~~~~~~D 67 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDL-IEPVF--FSTS----QAGGAAPSFGG------KEGTLQDAFDIDALKKLD 67 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCc-CcEEE--ecch----hhCCcccccCC------CcceEEecCChhHhcCCC
Confidence 47999999999999999986666655532 22433 2211 11111111111 112222 23356789999
Q ss_pred EEEEeCC
Q 013619 175 WALLIGA 181 (439)
Q Consensus 175 iVIitag 181 (439)
+|++++|
T Consensus 68 ivf~a~~ 74 (369)
T PRK06598 68 IIITCQG 74 (369)
T ss_pred EEEECCC
Confidence 9999865
No 162
>PRK06194 hypothetical protein; Provisional
Probab=95.16 E-value=0.21 Score=48.71 Aligned_cols=46 Identities=22% Similarity=0.133 Sum_probs=34.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHh
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~ 150 (439)
.++|.|+||+|.||.+++..|+..+. .+.+ .+++.+.++....++.
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~ 51 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGM-----KLVL----ADVQQDALDRAVAELR 51 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC-----EEEE----EeCChHHHHHHHHHHH
Confidence 35899999999999999999998763 2544 3566666666666664
No 163
>PRK05866 short chain dehydrogenase; Provisional
Probab=95.16 E-value=0.22 Score=49.37 Aligned_cols=112 Identities=13% Similarity=0.118 Sum_probs=63.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEE-EecC--ccc-----
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE----- 168 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~-i~~~--~~e----- 168 (439)
++|.|+||+|.||.+++..|+..+. .|.+ .+++.++++....++.... .++. +..| +.+
T Consensus 41 k~vlItGasggIG~~la~~La~~G~-----~Vi~----~~R~~~~l~~~~~~l~~~~----~~~~~~~~Dl~d~~~v~~~ 107 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGA-----TVVA----VARREDLLDAVADRITRAG----GDAMAVPCDLSDLDAVDAL 107 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHH
Confidence 5899999999999999999998763 2555 4677777776666554211 0111 1111 111
Q ss_pred ------ccCCCcEEEEeCCcCCC-CCCc-------hhhhHHHHH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 169 ------LFEDAEWALLIGAKPRG-PGME-------RAGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 169 ------al~dADiVIitag~~~k-pg~~-------r~~ll~~N~----~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
.+...|++|..+|.... +-.+ -...+..|. .+.+.+.+.+.+. ..+.+|+++.
T Consensus 108 ~~~~~~~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS 178 (293)
T PRK05866 108 VADVEKRIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLER--GDGHIINVAT 178 (293)
T ss_pred HHHHHHHcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCcEEEEECC
Confidence 23478999999876421 1111 112334442 3345555566553 3456666654
No 164
>PRK08291 ectoine utilization protein EutC; Validated
Probab=95.14 E-value=0.072 Score=54.15 Aligned_cols=75 Identities=21% Similarity=0.165 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (439)
...+|+|||+ |..|...+..+....-+ +.|.+ .+++.++++..+.++++.. + ..+....+..+++.+||
T Consensus 131 ~~~~v~IiGa-G~~a~~~~~al~~~~~~---~~V~v----~~R~~~~a~~l~~~~~~~~-g--~~v~~~~d~~~al~~aD 199 (330)
T PRK08291 131 DASRAAVIGA-GEQARLQLEALTLVRPI---REVRV----WARDAAKAEAYAADLRAEL-G--IPVTVARDVHEAVAGAD 199 (330)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCC---CEEEE----EcCCHHHHHHHHHHHhhcc-C--ceEEEeCCHHHHHccCC
Confidence 3569999995 99999877777642212 23666 4788889998888776321 1 23445566678899999
Q ss_pred EEEEeC
Q 013619 175 WALLIG 180 (439)
Q Consensus 175 iVIita 180 (439)
+||.+.
T Consensus 200 iVi~aT 205 (330)
T PRK08291 200 IIVTTT 205 (330)
T ss_pred EEEEee
Confidence 998864
No 165
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=95.13 E-value=0.053 Score=60.24 Aligned_cols=114 Identities=13% Similarity=0.077 Sum_probs=65.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhc-CCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCC-ccEEEecC---cc
Q 013619 93 WKKMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGIN---PY 167 (439)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~-~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~-~~v~i~~~---~~ 167 (439)
.++.|||.|+||+|+||++++..|+.. +. .|.. ++++..... ++.... .+. ..-.++.. ..
T Consensus 312 ~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~-----~V~~----l~r~~~~~~----~~~~~~-~~~~~~gDl~d~~~~l~ 377 (660)
T PRK08125 312 AKRRTRVLILGVNGFIGNHLTERLLRDDNY-----EVYG----LDIGSDAIS----RFLGHP-RFHFVEGDISIHSEWIE 377 (660)
T ss_pred hhcCCEEEEECCCchHHHHHHHHHHhCCCc-----EEEE----EeCCchhhh----hhcCCC-ceEEEeccccCcHHHHH
Confidence 345679999999999999999999874 32 1332 233322211 111000 000 00011111 12
Q ss_pred cccCCCcEEEEeCCcCC--CCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 168 ELFEDAEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 168 eal~dADiVIitag~~~--kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
++++++|+||.+|+... .......+.++.|+.-...+.+.+.+. . -.+|.++.
T Consensus 378 ~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~-~--~~~V~~SS 432 (660)
T PRK08125 378 YHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKY-N--KRIIFPST 432 (660)
T ss_pred HHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhc-C--CeEEEEcc
Confidence 45789999999887543 222334556778888888888888875 3 24555554
No 166
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.12 E-value=0.17 Score=48.41 Aligned_cols=114 Identities=17% Similarity=0.154 Sum_probs=64.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEE-EecC--ccc----
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE---- 168 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~-i~~~--~~e---- 168 (439)
.++|.|+||+|.||.+++..|+..+. .|.+ .+++++.++....++.+.. .++. +..| +.+
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~ 73 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGA-----AVAI----ADLNQDGANAVADEINKAG----GKAIGVAMDVTNEDAVNA 73 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----eEEE----EeCChHHHHHHHHHHHhcC----ceEEEEECCCCCHHHHHH
Confidence 45899999999999999999998764 2544 3566666665555554321 1111 1111 111
Q ss_pred -------ccCCCcEEEEeCCcCCC-C-----CCchhhhHHHHHHH----HHHHHHHHHhhcCCCeEEEEeCC
Q 013619 169 -------LFEDAEWALLIGAKPRG-P-----GMERAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 169 -------al~dADiVIitag~~~k-p-----g~~r~~ll~~N~~i----i~~i~~~i~~~a~p~aivIvvtN 223 (439)
.+...|+||.++|.... + ...-.+.+..|..- ...+.+.+.+. ...+.|++++.
T Consensus 74 ~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~-~~~~~iv~~ss 144 (262)
T PRK13394 74 GIDKVAERFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKD-DRGGVVIYMGS 144 (262)
T ss_pred HHHHHHHHcCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhh-cCCcEEEEEcc
Confidence 12357999998886321 1 11122334445443 55556666232 34456666654
No 167
>PLN02583 cinnamoyl-CoA reductase
Probab=95.11 E-value=0.14 Score=50.77 Aligned_cols=117 Identities=11% Similarity=0.036 Sum_probs=63.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccc--hhhHHHHHHHHhcccCCCCccE--EEe--cCcccc
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS--LQALEGVAMELEDSLFPLLREV--KIG--INPYEL 169 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~--~e~l~g~a~DL~~~~~~~~~~v--~i~--~~~~ea 169 (439)
..+|.|+||+|.||++++..|+..+. .+.+ ..++ ...+.....++.... ....-+ .++ ..-.++
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~-----~V~~----~~R~~~~~~~~~~~~~l~~~~-~~~~~~~~Dl~d~~~~~~~ 75 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGY-----TVHA----AVQKNGETEIEKEIRGLSCEE-ERLKVFDVDPLDYHSILDA 75 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-----EEEE----EEcCchhhhHHHHHHhcccCC-CceEEEEecCCCHHHHHHH
Confidence 35899999999999999999998763 2433 1222 122222222221100 000001 111 112467
Q ss_pred cCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 170 l~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
++++|.|+..++.+........+.+..|+.-...+.+.+.+.... ..||+++.
T Consensus 76 l~~~d~v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v-~riV~~SS 128 (297)
T PLN02583 76 LKGCSGLFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTI-EKVVFTSS 128 (297)
T ss_pred HcCCCEEEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCc-cEEEEecc
Confidence 889999886654332111122456778888888888877664112 34555543
No 168
>PRK06196 oxidoreductase; Provisional
Probab=95.06 E-value=0.32 Score=48.57 Aligned_cols=114 Identities=10% Similarity=0.004 Sum_probs=64.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecC---------c
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN---------P 166 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~---------~ 166 (439)
.++|.|+||+|.||.+++..|+..+. .+.+ .+++.++++....++.... + ....++.. -
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~-----~Vv~----~~R~~~~~~~~~~~l~~v~--~-~~~Dl~d~~~v~~~~~~~ 93 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGA-----HVIV----PARRPDVAREALAGIDGVE--V-VMLDLADLESVRAFAERF 93 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhhhCe--E-EEccCCCHHHHHHHHHHH
Confidence 35899999999999999999998763 2544 3566666655544443211 0 01111100 0
Q ss_pred ccccCCCcEEEEeCCcCCCCCC---c-hhhhHHHH----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 167 YELFEDAEWALLIGAKPRGPGM---E-RAGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 167 ~eal~dADiVIitag~~~kpg~---~-r~~ll~~N----~~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
.+.+...|++|..+|....+.. + -...+..| ..+.+.+.+.+.+. ..+.||+++.
T Consensus 94 ~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~--~~~~iV~vSS 156 (315)
T PRK06196 94 LDSGRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAG--AGARVVALSS 156 (315)
T ss_pred HhcCCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCeEEEECC
Confidence 1123568999999886432211 1 12223444 33456666666663 3466777765
No 169
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.05 E-value=0.19 Score=48.45 Aligned_cols=101 Identities=20% Similarity=0.225 Sum_probs=57.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccc----hhh---HHHHHHHHhcccCCCCccEEEecCccc
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS----LQA---LEGVAMELEDSLFPLLREVKIGINPYE 168 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~----~e~---l~g~a~DL~~~~~~~~~~v~i~~~~~e 168 (439)
..||.|+|| |..|..++..|...++-. +.|.+ .|++ .++ |.....++.+.. .. .. ...+..+
T Consensus 25 ~~rvlvlGA-GgAg~aiA~~L~~~G~~~--~~i~i----vdr~gl~~~~r~~~L~~~~~~la~~~-~~-~~--~~~~l~~ 93 (226)
T cd05311 25 EVKIVINGA-GAAGIAIARLLLAAGAKP--ENIVV----VDSKGVIYEGREDDLNPDKNEIAKET-NP-EK--TGGTLKE 93 (226)
T ss_pred CCEEEEECc-hHHHHHHHHHHHHcCcCc--ceEEE----EeCCCccccccchhhhHHHHHHHHHh-cc-Cc--ccCCHHH
Confidence 369999996 999999999999876531 13666 3444 233 222222332111 00 01 1123458
Q ss_pred ccCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 013619 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (439)
Q Consensus 169 al~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd 226 (439)
+++++|++|.+.+ +|+-- .+..+.|. ++.+|+.++||..
T Consensus 94 ~l~~~dvlIgaT~----~G~~~-----------~~~l~~m~----~~~ivf~lsnP~~ 132 (226)
T cd05311 94 ALKGADVFIGVSR----PGVVK-----------KEMIKKMA----KDPIVFALANPVP 132 (226)
T ss_pred HHhcCCEEEeCCC----CCCCC-----------HHHHHhhC----CCCEEEEeCCCCC
Confidence 8899999998754 34411 12222222 4567777889974
No 170
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=95.05 E-value=0.13 Score=49.96 Aligned_cols=117 Identities=16% Similarity=0.133 Sum_probs=79.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEec---------Ccc
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---------NPY 167 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~---------~~~ 167 (439)
+-+.|.||++.+|.+.|..|+..+. ++.| ..+..++|+.++.++.+.. .+...+.++. ...
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~-----~vvl----~aRR~drL~~la~~~~~~~-~~~~~~DVtD~~~~~~~i~~~~ 76 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGA-----KVVL----AARREERLEALADEIGAGA-ALALALDVTDRAAVEAAIEALP 76 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCC-----eEEE----EeccHHHHHHHHHhhccCc-eEEEeeccCCHHHHHHHHHHHH
Confidence 4578999999999999999998874 2555 5889999999999998411 0111222221 245
Q ss_pred cccCCCcEEEEeCCcCCCCCC------chhhhHHHHHH----HHHHHHHHHHhhcCCCeEEEEeCCch
Q 013619 168 ELFEDAEWALLIGAKPRGPGM------ERAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (439)
Q Consensus 168 eal~dADiVIitag~~~kpg~------~r~~ll~~N~~----ii~~i~~~i~~~a~p~aivIvvtNPv 225 (439)
+.+..-|++|.-||.-+.... +=..+++.|++ .++.+.+.|.+. ..|-||+++.=.
T Consensus 77 ~~~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r--~~G~IiN~~SiA 142 (246)
T COG4221 77 EEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVER--KSGHIINLGSIA 142 (246)
T ss_pred HhhCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhc--CCceEEEecccc
Confidence 678889999999886432111 12345677754 455566777774 567888887643
No 171
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=95.04 E-value=0.053 Score=53.90 Aligned_cols=99 Identities=16% Similarity=0.060 Sum_probs=57.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccC--CCc
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DAE 174 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~--dAD 174 (439)
|||.|+||+|+||++++..|+..+ + +.. .++.... ...|+.|.. ...+.++ +.|
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g---~---V~~----~~~~~~~---~~~Dl~d~~-----------~~~~~~~~~~~D 56 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG---N---LIA----LDVHSTD---YCGDFSNPE-----------GVAETVRKIRPD 56 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC---C---EEE----ecccccc---ccCCCCCHH-----------HHHHHHHhcCCC
Confidence 589999999999999999988654 1 322 1322110 011222111 0123344 589
Q ss_pred EEEEeCCcCCCC--CCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeC
Q 013619 175 WALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (439)
Q Consensus 175 iVIitag~~~kp--g~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvt 222 (439)
+||.+|+..... ..........|+.-...+++.+.+. + ..+|.+|
T Consensus 57 ~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~-g--~~~v~~S 103 (299)
T PRK09987 57 VIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEV-G--AWVVHYS 103 (299)
T ss_pred EEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHc-C--CeEEEEc
Confidence 999988754311 1222334567888888888888775 3 3555544
No 172
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.04 E-value=0.072 Score=53.55 Aligned_cols=105 Identities=19% Similarity=0.101 Sum_probs=56.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCC----ccEEEecCccccc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL----REVKIGINPYELF 170 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~----~~v~i~~~~~eal 170 (439)
.+|||+|||+ |.||..++..|...+. ++.+. .++. .+.....-........ ..+.+.+ +.++.
T Consensus 4 ~~m~I~IiG~-GaiG~~lA~~L~~~g~-----~V~~~----~r~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~ 70 (313)
T PRK06249 4 ETPRIGIIGT-GAIGGFYGAMLARAGF-----DVHFL----LRSD--YEAVRENGLQVDSVHGDFHLPPVQAYR-SAEDM 70 (313)
T ss_pred cCcEEEEECC-CHHHHHHHHHHHHCCC-----eEEEE----EeCC--HHHHHhCCeEEEeCCCCeeecCceEEc-chhhc
Confidence 3579999995 9999999999988652 35552 3322 1221110000000000 1122222 33467
Q ss_pred CCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHH
Q 013619 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (439)
Q Consensus 171 ~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~ 228 (439)
..+|+||++.-.. . ..+..+.+..+..+++.|+...|=.+..
T Consensus 71 ~~~D~vilavK~~----~------------~~~~~~~l~~~~~~~~~iv~lqNG~~~~ 112 (313)
T PRK06249 71 PPCDWVLVGLKTT----A------------NALLAPLIPQVAAPDAKVLLLQNGLGVE 112 (313)
T ss_pred CCCCEEEEEecCC----C------------hHhHHHHHhhhcCCCCEEEEecCCCCcH
Confidence 8899999983211 1 1122233333335778888888887643
No 173
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=95.02 E-value=0.052 Score=57.02 Aligned_cols=104 Identities=18% Similarity=0.206 Sum_probs=63.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (439)
..+|.|||+ |.+|..++..|...+.. .|.+ .+++.++++..+.++... .....+..+.+.++|+
T Consensus 180 ~~~VlViGa-G~iG~~~a~~L~~~G~~----~V~v----~~rs~~ra~~la~~~g~~-------~i~~~~l~~~l~~aDv 243 (417)
T TIGR01035 180 GKKALLIGA-GEMGELVAKHLLRKGVG----KILI----ANRTYERAEDLAKELGGE-------AVKFEDLEEYLAEADI 243 (417)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHCCCC----EEEE----EeCCHHHHHHHHHHcCCe-------EeeHHHHHHHHhhCCE
Confidence 469999995 99999999999876642 2555 467767766666544321 1111345678899999
Q ss_pred EEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHH
Q 013619 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (439)
Q Consensus 176 VIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~ 228 (439)
||.+.+.|. |-.+. ..+... +... ....+++-+++|-|+=
T Consensus 244 Vi~aT~s~~-~ii~~--------e~l~~~---~~~~-~~~~~viDla~Prdid 283 (417)
T TIGR01035 244 VISSTGAPH-PIVSK--------EDVERA---LRER-TRPLFIIDIAVPRDVD 283 (417)
T ss_pred EEECCCCCC-ceEcH--------HHHHHH---HhcC-CCCeEEEEeCCCCCCC
Confidence 999866543 11111 111111 1111 1246899999997653
No 174
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=95.01 E-value=0.037 Score=55.30 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=44.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (439)
|+||+||| .|.+|..++..|+..+. .+.+ .|++.++++.... . ......+..+++++||+
T Consensus 1 m~~Ig~IG-lG~mG~~mA~~l~~~G~-----~V~v----~d~~~~~~~~~~~----~------g~~~~~s~~~~~~~aDv 60 (296)
T PRK15461 1 MAAIAFIG-LGQMGSPMASNLLKQGH-----QLQV----FDVNPQAVDALVD----K------GATPAASPAQAAAGAEF 60 (296)
T ss_pred CCeEEEEe-eCHHHHHHHHHHHHCCC-----eEEE----EcCCHHHHHHHHH----c------CCcccCCHHHHHhcCCE
Confidence 35899999 59999999999998763 2544 4666666553321 1 11233456678899999
Q ss_pred EEEeC
Q 013619 176 ALLIG 180 (439)
Q Consensus 176 VIita 180 (439)
||++.
T Consensus 61 Vi~~v 65 (296)
T PRK15461 61 VITML 65 (296)
T ss_pred EEEec
Confidence 99873
No 175
>PRK07326 short chain dehydrogenase; Provisional
Probab=94.98 E-value=0.36 Score=45.43 Aligned_cols=45 Identities=24% Similarity=0.254 Sum_probs=33.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHh
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~ 150 (439)
++|.|+||+|.+|.+++..|+..+. .+.+ .+++.+++.....++.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~-----~V~~----~~r~~~~~~~~~~~l~ 51 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGY-----KVAI----TARDQKELEEAAAELN 51 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC-----EEEE----eeCCHHHHHHHHHHHh
Confidence 5899999999999999999987653 2444 3566666665555664
No 176
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.97 E-value=0.32 Score=46.05 Aligned_cols=46 Identities=26% Similarity=0.281 Sum_probs=34.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHh
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~ 150 (439)
.++|.|+||+|.+|.+++..|+..+. .+.+ .+++.++++....++.
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~ 50 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGA-----RVVV----TDRNEEAAERVAAEIL 50 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHh
Confidence 45899999999999999999997763 2544 4666666665555554
No 177
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=94.94 E-value=0.099 Score=48.65 Aligned_cols=75 Identities=20% Similarity=0.187 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEe-cC----cccc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN----PYEL 169 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~-~~----~~ea 169 (439)
+.+|+.|+||+|.+|..++..|+..+. .+.+ .+++.++++..+.++.+.. . ..+... .. ..+.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-----~V~l----~~R~~~~~~~l~~~l~~~~-~--~~~~~~~~~~~~~~~~~ 94 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGA-----RVVL----VGRDLERAQKAADSLRARF-G--EGVGAVETSDDAARAAA 94 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHHHhhc-C--CcEEEeeCCCHHHHHHH
Confidence 346999999889999999999987541 2555 3677788877766664221 1 122221 11 2367
Q ss_pred cCCCcEEEEeCC
Q 013619 170 FEDAEWALLIGA 181 (439)
Q Consensus 170 l~dADiVIitag 181 (439)
++++|+||.+..
T Consensus 95 ~~~~diVi~at~ 106 (194)
T cd01078 95 IKGADVVFAAGA 106 (194)
T ss_pred HhcCCEEEECCC
Confidence 899999888644
No 178
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=94.93 E-value=0.19 Score=50.14 Aligned_cols=114 Identities=15% Similarity=0.042 Sum_probs=61.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEe-c------Cccc
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I------NPYE 168 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~-~------~~~e 168 (439)
.++|.|+||+|.||++++..|+..+. .|... .++.+..+. ...+.... ....++.+. . .-.+
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~-----~V~~~----~r~~~~~~~-~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~ 73 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGY-----TVKAT----VRDLTDRKK-TEHLLALD-GAKERLKLFKADLLEESSFEQ 73 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEEE----ECCCcchHH-HHHHHhcc-CCCCceEEEecCCCCcchHHH
Confidence 36899999999999999999998653 24321 122222221 11111110 001112221 1 1234
Q ss_pred ccCCCcEEEEeCCcCCC-CCCchhhhHHHHHHHHHHHHHHHHhhcCCCe-EEEEeC
Q 013619 169 LFEDAEWALLIGAKPRG-PGMERAGLLDINGQIFAEQGKALNAVASRNV-KVIVVG 222 (439)
Q Consensus 169 al~dADiVIitag~~~k-pg~~r~~ll~~N~~ii~~i~~~i~~~a~p~a-ivIvvt 222 (439)
+++++|+||.+|+.... ......++++.|+.-...+.+.+.+. ++. .||.++
T Consensus 74 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~--~~v~rvV~~S 127 (322)
T PLN02986 74 AIEGCDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKET--PSVKRVILTS 127 (322)
T ss_pred HHhCCCEEEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhc--CCccEEEEec
Confidence 57789999999875321 11122345677777777777776653 222 455544
No 179
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.93 E-value=0.059 Score=49.76 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=25.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecc
Q 013619 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG 134 (439)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~ 134 (439)
||.|||+ |.+|+.++..|+..++- .|.|.+.|
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gvg----~i~lvD~D 32 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGVG----NLKLVDFD 32 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCC----eEEEEeCC
Confidence 6899995 99999999999988862 26665443
No 180
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=94.92 E-value=0.099 Score=50.24 Aligned_cols=79 Identities=22% Similarity=0.109 Sum_probs=47.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEeccc---------------ccchhhHHHHHHHHhcccCCCCccE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS---------------ERSLQALEGVAMELEDSLFPLLREV 160 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~---------------d~~~e~l~g~a~DL~~~~~~~~~~v 160 (439)
..||.|+|+ |.+|+.++..|+..++- .|.|.+.|. |+...|++..+..|.... |.. ++
T Consensus 21 ~~~VlivG~-GglGs~va~~La~~Gvg----~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~~-~i 93 (228)
T cd00757 21 NARVLVVGA-GGLGSPAAEYLAAAGVG----KLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAIN-PDV-EI 93 (228)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCC----EEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhC-CCC-EE
Confidence 459999995 99999999999998862 255543221 223334554455454332 221 12
Q ss_pred EEec-----C-cccccCCCcEEEEeCC
Q 013619 161 KIGI-----N-PYELFEDAEWALLIGA 181 (439)
Q Consensus 161 ~i~~-----~-~~eal~dADiVIitag 181 (439)
+... + ..+.++++|+||.+..
T Consensus 94 ~~~~~~i~~~~~~~~~~~~DvVi~~~d 120 (228)
T cd00757 94 EAYNERLDAENAEELIAGYDLVLDCTD 120 (228)
T ss_pred EEecceeCHHHHHHHHhCCCEEEEcCC
Confidence 2111 1 2245788999998744
No 181
>PLN02572 UDP-sulfoquinovose synthase
Probab=94.92 E-value=0.1 Score=55.19 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcC
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGE 120 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~ 120 (439)
+++||.|+||+|+||++++..|+..+
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~~G 71 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSKRG 71 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCC
Confidence 45789999999999999999999876
No 182
>PRK08618 ornithine cyclodeaminase; Validated
Probab=94.92 E-value=0.078 Score=53.80 Aligned_cols=75 Identities=16% Similarity=0.195 Sum_probs=51.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (439)
...+|+|||+ |.+|...+..++...-+ +.|.+ .+++.++++..+.++.+. +..++....+..+++.+||
T Consensus 126 ~~~~v~iiGa-G~~a~~~~~al~~~~~~---~~v~v----~~r~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~aD 194 (325)
T PRK08618 126 DAKTLCLIGT-GGQAKGQLEAVLAVRDI---ERVRV----YSRTFEKAYAFAQEIQSK---FNTEIYVVNSADEAIEEAD 194 (325)
T ss_pred CCcEEEEECC-cHHHHHHHHHHHhcCCc---cEEEE----ECCCHHHHHHHHHHHHHh---cCCcEEEeCCHHHHHhcCC
Confidence 3568999995 99998877766543222 23666 478888888888777532 1123445556677899999
Q ss_pred EEEEeC
Q 013619 175 WALLIG 180 (439)
Q Consensus 175 iVIita 180 (439)
+||++-
T Consensus 195 iVi~aT 200 (325)
T PRK08618 195 IIVTVT 200 (325)
T ss_pred EEEEcc
Confidence 999864
No 183
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=94.92 E-value=0.2 Score=49.47 Aligned_cols=106 Identities=18% Similarity=0.184 Sum_probs=59.5
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhh--HHH-HHHHHhcccCCCCccEEEecC-ccc-----c
Q 013619 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA--LEG-VAMELEDSLFPLLREVKIGIN-PYE-----L 169 (439)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~--l~g-~a~DL~~~~~~~~~~v~i~~~-~~e-----a 169 (439)
|.|+||+|+||++++..|+..+. +.+.+. |..... ... ...|+.|.. . ..+ ..+ .
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~----~~v~~~----~~~~~~~~~~~~~~~~~~d~~-~-------~~~~~~~~~~~~~ 65 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGI----TDILVV----DNLKDGTKFVNLVDLDIADYM-D-------KEDFLAQIMAGDD 65 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCC----ceEEEe----cCCCcchHHHhhhhhhhhhhh-h-------HHHHHHHHhcccc
Confidence 68999999999999999998763 124331 221111 000 111222110 0 000 011 2
Q ss_pred cCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 170 l~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
+.++|+||.+|+.+..........++.|......+.+.+.+. + ..+|.++.
T Consensus 66 ~~~~d~Vih~A~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~-~--~~~i~~SS 116 (308)
T PRK11150 66 FGDIEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER-E--IPFLYASS 116 (308)
T ss_pred cCCccEEEECceecCCcCCChHHHHHHHHHHHHHHHHHHHHc-C--CcEEEEcc
Confidence 237899999987543333334456778888888888888774 3 34555544
No 184
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.87 E-value=0.15 Score=45.17 Aligned_cols=120 Identities=17% Similarity=0.155 Sum_probs=66.0
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCC-c--cEEEecCcc-cccCCCc
Q 013619 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-R--EVKIGINPY-ELFEDAE 174 (439)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~-~--~v~i~~~~~-eal~dAD 174 (439)
|+|+|| |.||..+|..|.+.+. ++.| +.+.. +++....+=........ . ........+ +....+|
T Consensus 1 I~I~G~-GaiG~~~a~~L~~~g~-----~V~l----~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 69 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQAGH-----DVTL----VSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYD 69 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHHTTC-----EEEE----EESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTES
T ss_pred CEEECc-CHHHHHHHHHHHHCCC-----ceEE----EEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCc
Confidence 789995 9999999999988542 3666 34443 44432111000000110 0 111122222 5788999
Q ss_pred EEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Cceecccc
Q 013619 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTR 249 (439)
Q Consensus 175 iVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvig~gt~ 249 (439)
+||++.-.. -..+..+.++.+..++..|+.+-|=.+..-.+. +. +++ +++++.+.
T Consensus 70 ~viv~vKa~----------------~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~-~~---~~~~~v~~g~~~ 125 (151)
T PF02558_consen 70 LVIVAVKAY----------------QLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLA-EY---FPRPRVLGGVTT 125 (151)
T ss_dssp EEEE-SSGG----------------GHHHHHHHHCTGEETTEEEEEESSSSSHHHHHH-CH---STGSGEEEEEEE
T ss_pred EEEEEeccc----------------chHHHHHHHhhccCCCcEEEEEeCCCCcHHHHH-HH---cCCCcEEEEEEe
Confidence 999983211 123344556666667889999989876654433 22 222 56555443
No 185
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=94.86 E-value=0.087 Score=53.01 Aligned_cols=75 Identities=19% Similarity=0.175 Sum_probs=56.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCC
Q 013619 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (439)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (439)
+...+++|||+ |..|.+-+..++.-.-+ ++|.+ .+++.++++..+.++.+. +..++.+..+..+++++|
T Consensus 115 ~da~~l~iiGa-G~QA~~~~~a~~~v~~i---~~v~v----~~r~~~~a~~f~~~~~~~---~~~~v~~~~~~~eav~~a 183 (301)
T PRK06407 115 KNVENFTIIGS-GFQAETQLEGMASVYNP---KRIRV----YSRNFDHARAFAERFSKE---FGVDIRPVDNAEAALRDA 183 (301)
T ss_pred cCCcEEEEECC-cHHHHHHHHHHHhcCCC---CEEEE----ECCCHHHHHHHHHHHHHh---cCCcEEEeCCHHHHHhcC
Confidence 34579999995 99999877777654323 34666 478889999888888753 223567777889999999
Q ss_pred cEEEEe
Q 013619 174 EWALLI 179 (439)
Q Consensus 174 DiVIit 179 (439)
|+|+.+
T Consensus 184 DIV~ta 189 (301)
T PRK06407 184 DTITSI 189 (301)
T ss_pred CEEEEe
Confidence 999975
No 186
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.85 E-value=0.065 Score=54.96 Aligned_cols=76 Identities=24% Similarity=0.305 Sum_probs=47.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCC
Q 013619 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (439)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~d 172 (439)
..+.+||+||||+|.+|..+...|....-+.- . .|.++.++.+..+. ..+. ..++.+..-+.+++++
T Consensus 2 ~~~~~~VaIvGATG~vG~ell~lL~~h~~f~v-~--~l~~~aS~~saGk~----~~~~------~~~l~v~~~~~~~~~~ 68 (347)
T PRK06728 2 SEKGYHVAVVGATGAVGQKIIELLEKETKFNI-A--EVTLLSSKRSAGKT----VQFK------GREIIIQEAKINSFEG 68 (347)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHHCCCCCc-c--cEEEEECcccCCCC----eeeC------CcceEEEeCCHHHhcC
Confidence 34568999999999999999998886555432 1 13334333322211 1111 1234554445667899
Q ss_pred CcEEEEeCC
Q 013619 173 AEWALLIGA 181 (439)
Q Consensus 173 ADiVIitag 181 (439)
+|+|+++.+
T Consensus 69 ~Divf~a~~ 77 (347)
T PRK06728 69 VDIAFFSAG 77 (347)
T ss_pred CCEEEECCC
Confidence 999999754
No 187
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=94.85 E-value=0.15 Score=50.89 Aligned_cols=63 Identities=10% Similarity=0.125 Sum_probs=40.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCC---C
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED---A 173 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~d---A 173 (439)
|||+||| .|.+|..++..|...+. +|.+ .|++.++++.. .+. . .....+..+.+++ +
T Consensus 1 m~Ig~IG-lG~mG~~mA~~L~~~g~-----~v~v----~dr~~~~~~~~----~~~--g----~~~~~s~~~~~~~~~~a 60 (299)
T PRK12490 1 MKLGLIG-LGKMGGNMAERLREDGH-----EVVG----YDVNQEAVDVA----GKL--G----ITARHSLEELVSKLEAP 60 (299)
T ss_pred CEEEEEc-ccHHHHHHHHHHHhCCC-----EEEE----EECCHHHHHHH----HHC--C----CeecCCHHHHHHhCCCC
Confidence 5899999 59999999999988652 2544 46666665433 211 1 1233334444444 6
Q ss_pred cEEEEe
Q 013619 174 EWALLI 179 (439)
Q Consensus 174 DiVIit 179 (439)
|+||++
T Consensus 61 dvVi~~ 66 (299)
T PRK12490 61 RTIWVM 66 (299)
T ss_pred CEEEEE
Confidence 899887
No 188
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=94.82 E-value=0.16 Score=53.18 Aligned_cols=103 Identities=14% Similarity=0.164 Sum_probs=56.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCc----cccc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP----YELF 170 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~----~eal 170 (439)
+.++|.|+||+|.+|.+++..|+..+. .+.+ .+++.++++.. +.+..... ..+..-..+ .+.+
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G~-----~Vi~----l~r~~~~l~~~---~~~~~~~v-~~v~~Dvsd~~~v~~~l 243 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQGA-----KVVA----LTSNSDKITLE---INGEDLPV-KTLHWQVGQEAALAELL 243 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHH---HhhcCCCe-EEEEeeCCCHHHHHHHh
Confidence 356899999999999999999998763 2433 24554544322 11110000 011111112 2346
Q ss_pred CCCcEEEEeCCcCCCCCCch---hhhHHHH----HHHHHHHHHHHHh
Q 013619 171 EDAEWALLIGAKPRGPGMER---AGLLDIN----GQIFAEQGKALNA 210 (439)
Q Consensus 171 ~dADiVIitag~~~kpg~~r---~~ll~~N----~~ii~~i~~~i~~ 210 (439)
.+.|++|..+|.......+. .+.++.| ..+++.+.+.+++
T Consensus 244 ~~IDiLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~ 290 (406)
T PRK07424 244 EKVDILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKT 290 (406)
T ss_pred CCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999887643222221 2344555 3445555566655
No 189
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=94.80 E-value=0.18 Score=48.60 Aligned_cols=97 Identities=16% Similarity=0.225 Sum_probs=65.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (439)
+||+|||+ |.||..++..+-.+. .+- +.+.+ +|++.++++....- +... ..++..+.+.+.|++
T Consensus 1 l~vgiVGc-GaIG~~l~e~v~~~~-~~~-e~v~v----~D~~~ek~~~~~~~-------~~~~--~~s~ide~~~~~Dlv 64 (255)
T COG1712 1 LKVGIVGC-GAIGKFLLELVRDGR-VDF-ELVAV----YDRDEEKAKELEAS-------VGRR--CVSDIDELIAEVDLV 64 (255)
T ss_pred CeEEEEec-cHHHHHHHHHHhcCC-cce-eEEEE----ecCCHHHHHHHHhh-------cCCC--ccccHHHHhhcccee
Confidence 68999995 999999999877664 221 22233 57777776543221 1111 125556666999999
Q ss_pred EEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 013619 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (439)
Q Consensus 177 Iitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd 226 (439)
|=+|+ .+-+++++.++=+. +.+.+|+-++-=+|
T Consensus 65 VEaAS----------------~~Av~e~~~~~L~~-g~d~iV~SVGALad 97 (255)
T COG1712 65 VEAAS----------------PEAVREYVPKILKA-GIDVIVMSVGALAD 97 (255)
T ss_pred eeeCC----------------HHHHHHHhHHHHhc-CCCEEEEechhccC
Confidence 98876 36688898877775 68898888876554
No 190
>PRK05650 short chain dehydrogenase; Provisional
Probab=94.76 E-value=0.3 Score=47.33 Aligned_cols=113 Identities=11% Similarity=0.066 Sum_probs=63.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEE-EecC--ccc-----
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE----- 168 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~-i~~~--~~e----- 168 (439)
++|.|+||+|.||.+++..|+..+. .+.+ .+++.++++....++.... .++. +..| +.+
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~-----~V~~----~~r~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~~~ 67 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW-----RLAL----ADVNEEGGEETLKLLREAG----GDGFYQRCDVRDYSQLTAL 67 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CceEEEEccCCCHHHHHHH
Confidence 4789999999999999999998763 2544 3556666665555554321 1111 1111 111
Q ss_pred ------ccCCCcEEEEeCCcCCC-C--CCch---hhhHHHHH----HHHHHHHHHHHhhcCCCeEEEEeCCc
Q 013619 169 ------LFEDAEWALLIGAKPRG-P--GMER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 169 ------al~dADiVIitag~~~k-p--g~~r---~~ll~~N~----~ii~~i~~~i~~~a~p~aivIvvtNP 224 (439)
.+...|++|..+|.... + ..+. ...+..|. .+.+.+.+.+.+. ..+.|++++.-
T Consensus 68 ~~~i~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~iv~vsS~ 137 (270)
T PRK05650 68 AQACEEKWGGIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQ--KSGRIVNIASM 137 (270)
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhC--CCCEEEEECCh
Confidence 12468999998885421 1 1111 12344553 3444455555553 34566666543
No 191
>PRK06141 ornithine cyclodeaminase; Validated
Probab=94.75 E-value=0.1 Score=52.70 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=52.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh-cCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCC
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~-~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (439)
...+|+|||+ |..|...+..++. .+. ..|.+ .+++.++++.++.++.+. . ..+....+..+++++|
T Consensus 124 ~~~~v~iiG~-G~~a~~~~~al~~~~~~----~~V~V----~~Rs~~~a~~~a~~~~~~--g--~~~~~~~~~~~av~~a 190 (314)
T PRK06141 124 DASRLLVVGT-GRLASLLALAHASVRPI----KQVRV----WGRDPAKAEALAAELRAQ--G--FDAEVVTDLEAAVRQA 190 (314)
T ss_pred CCceEEEECC-cHHHHHHHHHHHhcCCC----CEEEE----EcCCHHHHHHHHHHHHhc--C--CceEEeCCHHHHHhcC
Confidence 4579999995 9999999886665 332 23666 478888888888887532 1 1355556677899999
Q ss_pred cEEEEeC
Q 013619 174 EWALLIG 180 (439)
Q Consensus 174 DiVIita 180 (439)
|+|+.+.
T Consensus 191 DIVi~aT 197 (314)
T PRK06141 191 DIISCAT 197 (314)
T ss_pred CEEEEee
Confidence 9997653
No 192
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=94.74 E-value=0.56 Score=48.71 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=24.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcC
Q 013619 94 KKMVNIAVSGAAGMIANHLLFKLAAGE 120 (439)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~ 120 (439)
.+.+||.|+||+|.||.+++..|+..+
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G 84 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRG 84 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC
Confidence 456799999999999999999999865
No 193
>PRK07825 short chain dehydrogenase; Provisional
Probab=94.71 E-value=0.51 Score=45.66 Aligned_cols=115 Identities=14% Similarity=-0.041 Sum_probs=65.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEec---------Cc
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---------NP 166 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~---------~~ 166 (439)
.++|.|+||+|.||.+++..|+..+. .+.+ .+++.++++....++.... + ....++. .-
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~--~-~~~D~~~~~~~~~~~~~~ 72 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGA-----RVAI----GDLDEALAKETAAELGLVV--G-GPLDVTDPASFAAFLDAV 72 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhccce--E-EEccCCCHHHHHHHHHHH
Confidence 35899999999999999999998663 2444 3566677765555543111 0 0011110 01
Q ss_pred ccccCCCcEEEEeCCcCCCCC---Cc---hhhhHHHHHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 013619 167 YELFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 167 ~eal~dADiVIitag~~~kpg---~~---r~~ll~~N~~----ii~~i~~~i~~~a~p~aivIvvtNP 224 (439)
.+.+.+.|++|..+|...... .+ -...+..|.. +.+.+.+.+.+. ..+.|++++--
T Consensus 73 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 138 (273)
T PRK07825 73 EADLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPR--GRGHVVNVASL 138 (273)
T ss_pred HHHcCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCEEEEEcCc
Confidence 122357899999988642111 11 1223445543 445555666653 45677777653
No 194
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=94.67 E-value=0.064 Score=51.72 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=24.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcC
Q 013619 93 WKKMVNIAVSGAAGMIANHLLFKLAAGE 120 (439)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~ 120 (439)
..+++||.|+||+|.+|..++..|+..+
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g 41 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKG 41 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCC
Confidence 3457899999999999999999998865
No 195
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.65 E-value=0.42 Score=45.45 Aligned_cols=114 Identities=14% Similarity=0.070 Sum_probs=63.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEE-ec--Cccc----
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NPYE---- 168 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i-~~--~~~e---- 168 (439)
..+|.|+||+|.+|.+++..|+..+. .+.+ .+++.+.++....++.... .++.. .. .+.+
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~-----~v~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~ 70 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGA-----KVVI----ADLNDEAAAAAAEALQKAG----GKAIGVAMDVTDEEAINA 70 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHH
Confidence 35899999999999999999997653 2444 3666676666666664211 11111 11 1111
Q ss_pred -------ccCCCcEEEEeCCcCCC-CC--Cc---hhhhHHHHHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 013619 169 -------LFEDAEWALLIGAKPRG-PG--ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 169 -------al~dADiVIitag~~~k-pg--~~---r~~ll~~N~~----ii~~i~~~i~~~a~p~aivIvvtNP 224 (439)
.+.+.|+||..+|.... +. .+ -.+.+..|.. +++.+.+.+++. ..+.|++++.-
T Consensus 71 ~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~iss~ 141 (258)
T PRK12429 71 GIDYAVETFGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQ--GGGRIINMASV 141 (258)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhc--CCeEEEEEcch
Confidence 22468999998875321 11 11 1122333433 355555666653 34566666553
No 196
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=94.65 E-value=0.11 Score=52.73 Aligned_cols=74 Identities=22% Similarity=0.267 Sum_probs=53.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh-cCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCC
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~-~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (439)
...+++|||+ |..|...+..|+. .++ +.|.+ .+++.++++..+.++.+.. + .++....+..+++.+|
T Consensus 128 ~~~~v~iiGa-G~qA~~~~~al~~~~~i----~~v~V----~~R~~~~a~~~a~~~~~~~-g--~~v~~~~~~~~av~~a 195 (326)
T TIGR02992 128 DSSVVAIFGA-GMQARLQLEALTLVRDI----RSARI----WARDSAKAEALALQLSSLL-G--IDVTAATDPRAAMSGA 195 (326)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHhCCc----cEEEE----ECCCHHHHHHHHHHHHhhc-C--ceEEEeCCHHHHhccC
Confidence 4568999995 9999998888874 332 23666 4788889988888875321 1 2344456667889999
Q ss_pred cEEEEeC
Q 013619 174 EWALLIG 180 (439)
Q Consensus 174 DiVIita 180 (439)
|+|+.+-
T Consensus 196 DiVvtaT 202 (326)
T TIGR02992 196 DIIVTTT 202 (326)
T ss_pred CEEEEec
Confidence 9999864
No 197
>PRK07069 short chain dehydrogenase; Validated
Probab=94.64 E-value=0.53 Score=44.59 Aligned_cols=116 Identities=12% Similarity=0.085 Sum_probs=65.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccc-hhhHHHHHHHHhcccCCCC---ccEEEecC--------
Q 013619 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-LQALEGVAMELEDSLFPLL---REVKIGIN-------- 165 (439)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~-~e~l~g~a~DL~~~~~~~~---~~v~i~~~-------- 165 (439)
||.|+||+|.||.+++..|+..+. .+.+ .+++ .+.++....++.+...... ....++..
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 71 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA-----KVFL----TDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLA 71 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHH
Confidence 589999999999999999998763 2444 2444 4556655555543210000 01111110
Q ss_pred -cccccCCCcEEEEeCCcCCCCC---C---chhhhHHHHHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 013619 166 -PYELFEDAEWALLIGAKPRGPG---M---ERAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 166 -~~eal~dADiVIitag~~~kpg---~---~r~~ll~~N~~----ii~~i~~~i~~~a~p~aivIvvtNP 224 (439)
-.+.+...|+||..+|...... . +-...+..|.. ..+.+.+.+.+. ..+.||+++..
T Consensus 72 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~ii~~ss~ 139 (251)
T PRK07069 72 QAADAMGGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRAS--QPASIVNISSV 139 (251)
T ss_pred HHHHHcCCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhc--CCcEEEEecCh
Confidence 0122456799999988643211 1 12234556655 566777777764 34566666654
No 198
>PRK07478 short chain dehydrogenase; Provisional
Probab=94.63 E-value=0.56 Score=44.80 Aligned_cols=114 Identities=18% Similarity=0.065 Sum_probs=66.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEE-ecC--cc-----
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----- 167 (439)
..++.|+||+|.||.+++..|+..+. .+.+ .+++.++++....++.+.. .++.. ..| +.
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~ 72 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGA-----KVVV----GARRQAELDQLVAEIRAEG----GEAVALAGDVRDEAYAKA 72 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHH
Confidence 35899999999999999999998763 2544 3566677776666665321 11111 111 11
Q ss_pred ------cccCCCcEEEEeCCcC--CCCC--Cch---hhhHHHHHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 013619 168 ------ELFEDAEWALLIGAKP--RGPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 168 ------eal~dADiVIitag~~--~kpg--~~r---~~ll~~N~~----ii~~i~~~i~~~a~p~aivIvvtNP 224 (439)
+.+...|++|..+|.. ..+- .+. ...+..|.. +.+...+.+.+. ..+.||+++.-
T Consensus 73 ~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~--~~~~iv~~sS~ 144 (254)
T PRK07478 73 LVALAVERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLAR--GGGSLIFTSTF 144 (254)
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCceEEEEech
Confidence 1233679999988863 2221 111 234555543 444555666553 44566666553
No 199
>PRK07024 short chain dehydrogenase; Provisional
Probab=94.63 E-value=0.26 Score=47.37 Aligned_cols=44 Identities=25% Similarity=0.347 Sum_probs=33.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHH
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL 149 (439)
++|.|+||+|.+|.+++..|+..+. .+.+ .+++.++++....++
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~ 46 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGA-----TLGL----VARRTDALQAFAARL 46 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHhc
Confidence 5899999999999999999998763 2544 466666666555544
No 200
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=94.63 E-value=0.47 Score=45.51 Aligned_cols=120 Identities=13% Similarity=0.057 Sum_probs=63.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCccccc----
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF---- 170 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal---- 170 (439)
+.++|.|+||+|.||.+++..|+..+. .+.+ .+++.++++....++.... .....+..--.+.+.+
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~i~~~~-~~~~~~~~Dl~d~~~i~~~~ 80 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEALGEAGA-----RVVL----SARKAEELEEAAAHLEALG-IDALWIAADVADEADIERLA 80 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHH
Confidence 346899999999999999999998663 2444 3556566665544443211 0000011111122222
Q ss_pred -------CCCcEEEEeCCcCCCCCC------chhhhHHHHHHHHHHHHHHHHhh---cCCCeEEEEeCCc
Q 013619 171 -------EDAEWALLIGAKPRGPGM------ERAGLLDINGQIFAEQGKALNAV---ASRNVKVIVVGNP 224 (439)
Q Consensus 171 -------~dADiVIitag~~~kpg~------~r~~ll~~N~~ii~~i~~~i~~~---a~p~aivIvvtNP 224 (439)
...|.||..+|....... .-...++.|..-...+.+.+..+ ..+.+.|++++.-
T Consensus 81 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~ 150 (259)
T PRK08213 81 EETLERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASV 150 (259)
T ss_pred HHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECCh
Confidence 467999999875321111 11234555655444444433322 1244667777653
No 201
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=94.57 E-value=0.16 Score=50.39 Aligned_cols=74 Identities=19% Similarity=0.195 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (439)
+..++.|+|| |.+|.+++..|...+.. .|.+ .+++.++++..+.++.... .+.+..+..+.+.++|
T Consensus 122 ~~k~vlVlGa-Gg~a~ai~~aL~~~g~~----~V~v----~~R~~~~a~~l~~~~~~~~-----~~~~~~~~~~~~~~~D 187 (278)
T PRK00258 122 KGKRILILGA-GGAARAVILPLLDLGVA----EITI----VNRTVERAEELAKLFGALG-----KAELDLELQEELADFD 187 (278)
T ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCC----EEEE----EeCCHHHHHHHHHHhhhcc-----ceeecccchhccccCC
Confidence 3458999996 99999999999977643 2666 4788888887776664221 1222123457788999
Q ss_pred EEEEeCCc
Q 013619 175 WALLIGAK 182 (439)
Q Consensus 175 iVIitag~ 182 (439)
+||.+...
T Consensus 188 ivInaTp~ 195 (278)
T PRK00258 188 LIINATSA 195 (278)
T ss_pred EEEECCcC
Confidence 99997543
No 202
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.53 E-value=0.039 Score=53.11 Aligned_cols=69 Identities=20% Similarity=0.246 Sum_probs=43.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEec-C----c-cccc
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N----P-YELF 170 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~-~----~-~eal 170 (439)
|+|.|+|+ |.+|+++|..|...+. .+++ +|.++++++..+.|-.+. .+..+. . . ..-+
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~-----~Vv~----Id~d~~~~~~~~~~~~~~------~~v~gd~t~~~~L~~agi 64 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGH-----NVVL----IDRDEERVEEFLADELDT------HVVIGDATDEDVLEEAGI 64 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCC-----ceEE----EEcCHHHHHHHhhhhcce------EEEEecCCCHHHHHhcCC
Confidence 68999995 9999999999998752 3556 577777766432221111 122211 1 2 2347
Q ss_pred CCCcEEEEeCC
Q 013619 171 EDAEWALLIGA 181 (439)
Q Consensus 171 ~dADiVIitag 181 (439)
.++|.+|.+-|
T Consensus 65 ~~aD~vva~t~ 75 (225)
T COG0569 65 DDADAVVAATG 75 (225)
T ss_pred CcCCEEEEeeC
Confidence 88999988643
No 203
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=94.52 E-value=0.34 Score=46.61 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=47.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCC-ccEEEec--C-------c
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI--N-------P 166 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~-~~v~i~~--~-------~ 166 (439)
|+|.|+||+|.+|.+++..|+..+. .+.+ .+++.+.++....++.+.. ... ....++. + -
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~d~~~~~~~~~~~ 70 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA-----RVVI----SSRNEENLEKALKELKEYG-EVYAVKADLSDKDDLKNLVKEA 70 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHhcC-CceEEEcCCCCHHHHHHHHHHH
Confidence 5899999999999999999998763 2544 4666677766666664321 000 0011110 0 0
Q ss_pred ccccCCCcEEEEeCCcC
Q 013619 167 YELFEDAEWALLIGAKP 183 (439)
Q Consensus 167 ~eal~dADiVIitag~~ 183 (439)
.+.+..-|++|..+|..
T Consensus 71 ~~~~g~id~li~naG~~ 87 (259)
T PRK08340 71 WELLGGIDALVWNAGNV 87 (259)
T ss_pred HHhcCCCCEEEECCCCC
Confidence 12235689999998863
No 204
>PRK08265 short chain dehydrogenase; Provisional
Probab=94.49 E-value=0.13 Score=49.78 Aligned_cols=45 Identities=22% Similarity=0.193 Sum_probs=32.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHH
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL 149 (439)
..++.|+||+|.||.+++..|+..+. .+.+ .+++.+.++..+.++
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~ 50 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGA-----RVAI----VDIDADNGAAVAASL 50 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHh
Confidence 35899999999999999999998763 2555 356666565554444
No 205
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=94.48 E-value=0.1 Score=52.68 Aligned_cols=73 Identities=26% Similarity=0.202 Sum_probs=51.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (439)
...+++|||+ |..+.+-+..++.-.-+ ++|.+ .+++.++++..+.++++ . ...+....+..+++++||
T Consensus 127 ~~~~l~viGa-G~QA~~~~~a~~~~~~i---~~v~v----~~r~~~~~~~~~~~~~~-~---~~~v~~~~~~~~av~~aD 194 (313)
T PF02423_consen 127 DARTLGVIGA-GVQARWHLRALAAVRPI---KEVRV----YSRSPERAEAFAARLRD-L---GVPVVAVDSAEEAVRGAD 194 (313)
T ss_dssp T--EEEEE---SHHHHHHHHHHHHHS-----SEEEE----E-SSHHHHHHHHHHHHC-C---CTCEEEESSHHHHHTTSS
T ss_pred CCceEEEECC-CHHHHHHHHHHHHhCCc---eEEEE----EccChhHHHHHHHhhcc-c---cccceeccchhhhcccCC
Confidence 4569999995 99998877766643223 34766 47888999999999986 2 336777788899999999
Q ss_pred EEEEe
Q 013619 175 WALLI 179 (439)
Q Consensus 175 iVIit 179 (439)
+|+.+
T Consensus 195 ii~ta 199 (313)
T PF02423_consen 195 IIVTA 199 (313)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 99875
No 206
>PRK12937 short chain dehydrogenase; Provisional
Probab=94.46 E-value=0.51 Score=44.56 Aligned_cols=29 Identities=24% Similarity=0.117 Sum_probs=24.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
+.+..+|.|+||+|.+|.+++..|+..+.
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~ 30 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRLAADGF 30 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 34456899999999999999999998764
No 207
>PRK07814 short chain dehydrogenase; Provisional
Probab=94.46 E-value=0.38 Score=46.42 Aligned_cols=118 Identities=14% Similarity=0.075 Sum_probs=64.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccc------
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL------ 169 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~ea------ 169 (439)
.+++.|+||+|.||.+++..|+..+. .+.+ .+++.+.++....++.... ....-+..--.+++.
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~-----~Vi~----~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~ 79 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGA-----DVLI----AARTESQLDEVAEQIRAAG-RRAHVVAADLAHPEATAGLAG 79 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHH
Confidence 46899999999999999999998763 2444 3566666666666554321 000001111112222
Q ss_pred -----cCCCcEEEEeCCcCCC-C-C-Cc---hhhhHHHHHHHHH----HHHHHHHhhcCCCeEEEEeCCc
Q 013619 170 -----FEDAEWALLIGAKPRG-P-G-ME---RAGLLDINGQIFA----EQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 170 -----l~dADiVIitag~~~k-p-g-~~---r~~ll~~N~~ii~----~i~~~i~~~a~p~aivIvvtNP 224 (439)
+...|+||..+|.... + . .+ -...+..|..-.. ...+.+.+. ...+.+++++.-
T Consensus 80 ~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~g~iv~~sS~ 148 (263)
T PRK07814 80 QAVEAFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEH-SGGGSVINISST 148 (263)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhh-cCCeEEEEEccc
Confidence 2467999998875321 1 1 11 1223444543333 333444443 345667777653
No 208
>PRK08339 short chain dehydrogenase; Provisional
Probab=94.45 E-value=0.68 Score=44.90 Aligned_cols=114 Identities=11% Similarity=0.044 Sum_probs=66.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEE-ec--Cccc-----
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NPYE----- 168 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i-~~--~~~e----- 168 (439)
..+.|+||+|.||.+++..|+..+. .+.+ .+++.+.++..+.++.... + .++.. .. .+.+
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~--~~~~~~~~Dv~~~~~i~~~ 76 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGA-----DVIL----LSRNEENLKKAREKIKSES-N--VDVSYIVADLTKREDLERT 76 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhhc-C--CceEEEEecCCCHHHHHHH
Confidence 4689999999999999999998763 2555 3566677776666664321 1 01111 10 1111
Q ss_pred -----ccCCCcEEEEeCCcCCCC---CCchh---hhHHHH----HHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 013619 169 -----LFEDAEWALLIGAKPRGP---GMERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 169 -----al~dADiVIitag~~~kp---g~~r~---~ll~~N----~~ii~~i~~~i~~~a~p~aivIvvtNP 224 (439)
.+..-|++|..+|.+... ..+.. ..+..| ..+.+.+.+.|++. ..+.||+++..
T Consensus 77 ~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~--~~g~Ii~isS~ 145 (263)
T PRK08339 77 VKELKNIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERK--GFGRIIYSTSV 145 (263)
T ss_pred HHHHHhhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEEcCc
Confidence 123579999988864321 11211 223333 44566667777663 45667777654
No 209
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=94.44 E-value=0.44 Score=45.55 Aligned_cols=114 Identities=16% Similarity=0.056 Sum_probs=64.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEE-ec--Ccc-----
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NPY----- 167 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i-~~--~~~----- 167 (439)
..+|.|+||+|.+|..++..|+..+. .|.+ .++++++++....++.+.. .++.. .. .++
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~i~~~~----~~~~~~~~D~~~~~~~~~ 76 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGA-----EVIL----NGRDPAKLAAAAESLKGQG----LSAHALAFDVTDHDAVRA 76 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHhcC----ceEEEEEccCCCHHHHHH
Confidence 35899999999999999999998763 2554 3566666665555554321 01111 11 111
Q ss_pred ------cccCCCcEEEEeCCcCCC-CC--Cc---hhhhHHHHHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 013619 168 ------ELFEDAEWALLIGAKPRG-PG--ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 168 ------eal~dADiVIitag~~~k-pg--~~---r~~ll~~N~~----ii~~i~~~i~~~a~p~aivIvvtNP 224 (439)
+.+...|+||..+|.... +- .+ -.+.+..|.. +++.+.+.+.+. ..+.|++++..
T Consensus 77 ~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~g~iv~iss~ 147 (255)
T PRK07523 77 AIDAFEAEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIAR--GAGKIINIASV 147 (255)
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHh--CCeEEEEEccc
Confidence 123457999998886421 11 11 1233455544 344444444442 34667777654
No 210
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=94.43 E-value=0.1 Score=53.40 Aligned_cols=74 Identities=22% Similarity=0.302 Sum_probs=42.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCC
Q 013619 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (439)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (439)
.+|+||+|+||+|.+|..++..|...+.- ...|..+-..... |.-..+.. ....+..-+.++++++
T Consensus 2 ~~~~~IaIvGATG~vG~eLlrlL~~~~hP----~~~l~~v~s~~~a----G~~l~~~~------~~l~~~~~~~~~~~~v 67 (336)
T PRK05671 2 SQPLDIAVVGATGTVGEALVQILEERDFP----VGTLHLLASSESA----GHSVPFAG------KNLRVREVDSFDFSQV 67 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhhCCCC----ceEEEEEECcccC----CCeeccCC------cceEEeeCChHHhcCC
Confidence 45689999999999999999999854321 1233333222111 11111111 1233433233457899
Q ss_pred cEEEEeCC
Q 013619 174 EWALLIGA 181 (439)
Q Consensus 174 DiVIitag 181 (439)
|+|+++.+
T Consensus 68 D~vFla~p 75 (336)
T PRK05671 68 QLAFFAAG 75 (336)
T ss_pred CEEEEcCC
Confidence 99999754
No 211
>PRK07904 short chain dehydrogenase; Provisional
Probab=94.43 E-value=0.53 Score=45.45 Aligned_cols=120 Identities=9% Similarity=0.046 Sum_probs=64.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhh-HHHHHHHHhcccC-CC-CccEEEecC-c----
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA-LEGVAMELEDSLF-PL-LREVKIGIN-P---- 166 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~-l~g~a~DL~~~~~-~~-~~~v~i~~~-~---- 166 (439)
+.++|.|+||+|.+|.+++..|+..+-+ .+.+ .+++.+. ++..+.++..... .. .....++.. .
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~----~V~~----~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~ 78 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPA----RVVL----AALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKV 78 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCC----eEEE----EeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHH
Confidence 4568999999999999999999876422 2444 3555554 6666666643210 00 001111110 0
Q ss_pred cccc---CCCcEEEEeCCcCCCCCC---ch---hhhHHHHHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 013619 167 YELF---EDAEWALLIGAKPRGPGM---ER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 167 ~eal---~dADiVIitag~~~kpg~---~r---~~ll~~N~~----ii~~i~~~i~~~a~p~aivIvvtNP 224 (439)
.+.+ .+.|++|..+|....... +- .+.+..|.. +.+.+.+.+.+. ..+.|++++--
T Consensus 79 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~--~~~~iv~isS~ 147 (253)
T PRK07904 79 IDAAFAGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQ--GFGQIIAMSSV 147 (253)
T ss_pred HHHHHhcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhc--CCceEEEEech
Confidence 1111 379999988776422111 11 123555543 234566666664 34566666543
No 212
>PRK07340 ornithine cyclodeaminase; Validated
Probab=94.42 E-value=0.12 Score=52.04 Aligned_cols=73 Identities=12% Similarity=0.086 Sum_probs=52.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHh-cCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCC
Q 013619 94 KKMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (439)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~-~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~d 172 (439)
....+|+|||+ |..|...+..++. .+. +.|.+ .+++.++++..+.++.+. .. .+. ..+..+++.+
T Consensus 123 ~~~~~v~IiGa-G~qa~~~~~al~~~~~~----~~v~v----~~r~~~~a~~~a~~~~~~--~~--~~~-~~~~~~av~~ 188 (304)
T PRK07340 123 APPGDLLLIGT-GVQARAHLEAFAAGLPV----RRVWV----RGRTAASAAAFCAHARAL--GP--TAE-PLDGEAIPEA 188 (304)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHhCCC----CEEEE----EcCCHHHHHHHHHHHHhc--CC--eeE-ECCHHHHhhc
Confidence 34579999995 9999999998875 332 23666 478888888888887632 11 222 3556778999
Q ss_pred CcEEEEeC
Q 013619 173 AEWALLIG 180 (439)
Q Consensus 173 ADiVIita 180 (439)
||+||.+-
T Consensus 189 aDiVitaT 196 (304)
T PRK07340 189 VDLVVTAT 196 (304)
T ss_pred CCEEEEcc
Confidence 99999863
No 213
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=94.41 E-value=0.12 Score=44.97 Aligned_cols=74 Identities=15% Similarity=0.139 Sum_probs=43.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (439)
|||+|+|++|.+|..++..+....-+ +|+-. ++++.....| .|+.+...-....+.+..+..+.+..+|+|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~----~lv~~---v~~~~~~~~g--~d~g~~~~~~~~~~~v~~~l~~~~~~~DVv 71 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGF----ELVGA---VDRKPSAKVG--KDVGELAGIGPLGVPVTDDLEELLEEADVV 71 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTE----EEEEE---EETTTSTTTT--SBCHHHCTSST-SSBEBS-HHHHTTH-SEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCc----EEEEE---EecCCccccc--chhhhhhCcCCcccccchhHHHhcccCCEE
Confidence 69999997799999999999884321 23222 3544322221 222222100123455667788888899988
Q ss_pred EEe
Q 013619 177 LLI 179 (439)
Q Consensus 177 Iit 179 (439)
|-.
T Consensus 72 IDf 74 (124)
T PF01113_consen 72 IDF 74 (124)
T ss_dssp EEE
T ss_pred EEc
Confidence 865
No 214
>PRK07806 short chain dehydrogenase; Provisional
Probab=94.41 E-value=0.32 Score=46.14 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=21.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcC
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGE 120 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~ 120 (439)
++|.|+||+|.+|.+++..|+..+
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G 30 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAG 30 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCC
Confidence 589999999999999999998765
No 215
>PRK08643 acetoin reductase; Validated
Probab=94.40 E-value=0.46 Score=45.38 Aligned_cols=118 Identities=14% Similarity=0.082 Sum_probs=63.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCC-CccEEEec---------Cc
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGI---------NP 166 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~-~~~v~i~~---------~~ 166 (439)
.++.|+||+|.||.+++..|+..+. .+.+ ++++.+.++....++.+..... .....++. .-
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 73 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGF-----KVAI----VDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQV 73 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 3789999999999999999998763 2444 3566666666656654321000 00011110 01
Q ss_pred ccccCCCcEEEEeCCcCC-CCCC--ch---hhhHHHHHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 013619 167 YELFEDAEWALLIGAKPR-GPGM--ER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 167 ~eal~dADiVIitag~~~-kpg~--~r---~~ll~~N~~----ii~~i~~~i~~~a~p~aivIvvtNP 224 (439)
.+.+...|+||.++|... .+.. +. ...+..|.. +.+.+.+.+.+. .+++.|++++.-
T Consensus 74 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~~iv~~sS~ 140 (256)
T PRK08643 74 VDTFGDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKL-GHGGKIINATSQ 140 (256)
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCCEEEEECcc
Confidence 112346899999987532 2211 11 223444433 333444445443 345677777754
No 216
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.40 E-value=0.79 Score=42.96 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
+++|.|+||+|.+|..++..|++.+.
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~~g~ 31 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLARAGA 31 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999998764
No 217
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=94.36 E-value=0.25 Score=49.40 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=40.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccC---CC
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE---DA 173 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~---dA 173 (439)
|||+||| .|.+|..++..|+..+. ++.+ .|++.++++.. .+. . +....+..+.++ ++
T Consensus 1 m~Ig~IG-lG~MG~~mA~~L~~~g~-----~v~v----~dr~~~~~~~~----~~~--g----~~~~~~~~e~~~~~~~~ 60 (301)
T PRK09599 1 MQLGMIG-LGRMGGNMARRLLRGGH-----EVVG----YDRNPEAVEAL----AEE--G----ATGADSLEELVAKLPAP 60 (301)
T ss_pred CEEEEEc-ccHHHHHHHHHHHHCCC-----eEEE----EECCHHHHHHH----HHC--C----CeecCCHHHHHhhcCCC
Confidence 5899999 59999999999997652 2555 46766665533 211 1 123333334444 46
Q ss_pred cEEEEe
Q 013619 174 EWALLI 179 (439)
Q Consensus 174 DiVIit 179 (439)
|+||++
T Consensus 61 dvvi~~ 66 (301)
T PRK09599 61 RVVWLM 66 (301)
T ss_pred CEEEEE
Confidence 998887
No 218
>PRK07774 short chain dehydrogenase; Provisional
Probab=94.36 E-value=0.47 Score=45.03 Aligned_cols=46 Identities=24% Similarity=0.228 Sum_probs=32.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHh
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~ 150 (439)
.+++.|+||+|.||.+++..|+..+. .+.+ .+++.+.++....++.
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~-----~vi~----~~r~~~~~~~~~~~~~ 51 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGA-----SVVV----ADINAEGAERVAKQIV 51 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 35899999999999999999998652 2544 3555555555544443
No 219
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=94.35 E-value=0.089 Score=53.97 Aligned_cols=73 Identities=22% Similarity=0.280 Sum_probs=43.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (439)
..+||+|+||+|.+|..++..|...+.- ...|..+...++.++.. +.. . .++.+..-+.+++.++|
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP----~~~l~~las~rsaGk~~----~~~-----~-~~~~v~~~~~~~~~~~D 71 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFP----YSSLKMLASARSAGKKV----TFE-----G-RDYTVEELTEDSFDGVD 71 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCC----cceEEEEEccCCCCCee----eec-----C-ceeEEEeCCHHHHcCCC
Confidence 4579999999999999999888764321 12333333333322211 111 1 23344333456789999
Q ss_pred EEEEeCC
Q 013619 175 WALLIGA 181 (439)
Q Consensus 175 iVIitag 181 (439)
+|+++.+
T Consensus 72 ~vf~a~p 78 (344)
T PLN02383 72 IALFSAG 78 (344)
T ss_pred EEEECCC
Confidence 9999865
No 220
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=94.32 E-value=0.3 Score=45.81 Aligned_cols=46 Identities=26% Similarity=0.327 Sum_probs=33.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHh
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~ 150 (439)
+++|.|+||+|.+|..++..|+..+. .+.+ ++++.++++....++.
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~-----~v~~----~~r~~~~~~~~~~~~~ 50 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGA-----KVVI----YDSNEEAAEALAAELR 50 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCChhHHHHHHHHHH
Confidence 46899999999999999999998653 2444 4566666665555554
No 221
>PLN02780 ketoreductase/ oxidoreductase
Probab=94.31 E-value=0.54 Score=47.45 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=37.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhc
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~ 151 (439)
...+.|+||+|.||.+++..|+..+. .|.+ .+++.++++..+.++..
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~-----~Vil----~~R~~~~l~~~~~~l~~ 99 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL-----NLVL----VARNPDKLKDVSDSIQS 99 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----CEEE----EECCHHHHHHHHHHHHH
Confidence 45799999999999999999998763 2655 47788888888877754
No 222
>PRK07832 short chain dehydrogenase; Provisional
Probab=94.27 E-value=0.7 Score=44.81 Aligned_cols=119 Identities=16% Similarity=0.143 Sum_probs=63.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCC--ccEEEec---------C
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL--REVKIGI---------N 165 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~--~~v~i~~---------~ 165 (439)
+++.|+||+|.+|..++..|+..+. .+.+ ++++.+.++....++........ ....++. .
T Consensus 1 k~vlItGas~giG~~la~~la~~G~-----~vv~----~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 71 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGA-----ELFL----TDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAAD 71 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHH
Confidence 3799999999999999999998663 2444 35666666666666543210000 0111110 0
Q ss_pred cccccCCCcEEEEeCCcCCCCC---Cch---hhhHHHHHH----HHHHHHHHHHhhcCCCeEEEEeCCch
Q 013619 166 PYELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (439)
Q Consensus 166 ~~eal~dADiVIitag~~~kpg---~~r---~~ll~~N~~----ii~~i~~~i~~~a~p~aivIvvtNPv 225 (439)
-.+.+...|+||..+|...... .+. ...+..|.. +.+.+.+.+.+. ...+.||+++...
T Consensus 72 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~~~g~ii~isS~~ 140 (272)
T PRK07832 72 IHAAHGSMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAA-GRGGHLVNVSSAA 140 (272)
T ss_pred HHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCcEEEEEcccc
Confidence 1122456899999888642111 111 223444433 333333444442 2346677776543
No 223
>PRK07454 short chain dehydrogenase; Provisional
Probab=94.26 E-value=0.68 Score=43.78 Aligned_cols=115 Identities=21% Similarity=0.171 Sum_probs=63.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEE-Eec--Cccc---
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGI--NPYE--- 168 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~-i~~--~~~e--- 168 (439)
+++++.|+||+|.+|..++..|+..+. .|.+ .+++.+.++....++.... .++. +.. .+++
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~ 71 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGW-----DLAL----VARSQDALEALAAELRSTG----VKAAAYSIDLSNPEAIA 71 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhCC----CcEEEEEccCCCHHHHH
Confidence 456899999999999999999998764 2444 3566565555544443211 1111 111 1111
Q ss_pred --------ccCCCcEEEEeCCcCCC-C--CCc---hhhhHHHHHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 013619 169 --------LFEDAEWALLIGAKPRG-P--GME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 169 --------al~dADiVIitag~~~k-p--g~~---r~~ll~~N~~----ii~~i~~~i~~~a~p~aivIvvtNP 224 (439)
.+...|++|..+|.... + ..+ -...+..|.. +.+...+.+.+. ..+.+++++..
T Consensus 72 ~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~iv~isS~ 143 (241)
T PRK07454 72 PGIAELLEQFGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRAR--GGGLIINVSSI 143 (241)
T ss_pred HHHHHHHHHcCCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhc--CCcEEEEEccH
Confidence 12458999998886431 1 111 1223444433 344444555543 34667777654
No 224
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.26 E-value=0.11 Score=49.23 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=26.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEec
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLL 133 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~ 133 (439)
+..||+|+|+ |.+|+.++..|+..++- .|.|.+.
T Consensus 20 ~~~~V~IvG~-GglGs~ia~~La~~Gvg----~i~lvD~ 53 (200)
T TIGR02354 20 EQATVAICGL-GGLGSNVAINLARAGIG----KLILVDF 53 (200)
T ss_pred hCCcEEEECc-CHHHHHHHHHHHHcCCC----EEEEECC
Confidence 3469999996 99999999999998862 2666443
No 225
>PRK09186 flagellin modification protein A; Provisional
Probab=94.25 E-value=0.49 Score=45.05 Aligned_cols=46 Identities=20% Similarity=0.254 Sum_probs=34.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHh
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~ 150 (439)
.++|.|+||+|.||.+++..|+..+. .+.+ .+++.++++..+.++.
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~-----~v~~----~~r~~~~~~~~~~~l~ 49 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGG-----IVIA----ADIDKEALNELLESLG 49 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EecChHHHHHHHHHHH
Confidence 46899999999999999999998763 2444 3566667666666663
No 226
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=94.24 E-value=0.2 Score=56.33 Aligned_cols=94 Identities=19% Similarity=0.190 Sum_probs=55.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (439)
.||+||| .|.+|.+++..|...+.. ..|.. .|++.++++. +.++ .. . .....+..+++.+||+|
T Consensus 4 ~~I~IIG-~G~mG~ala~~l~~~G~~---~~V~~----~d~~~~~~~~-a~~~--g~--~---~~~~~~~~~~~~~aDvV 67 (735)
T PRK14806 4 GRVVVIG-LGLIGGSFAKALRERGLA---REVVA----VDRRAKSLEL-AVSL--GV--I---DRGEEDLAEAVSGADVI 67 (735)
T ss_pred cEEEEEe-eCHHHHHHHHHHHhcCCC---CEEEE----EECChhHHHH-HHHC--CC--C---CcccCCHHHHhcCCCEE
Confidence 5899999 599999999999877632 12544 4666666542 2221 11 0 01223445678999999
Q ss_pred EEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeC
Q 013619 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (439)
Q Consensus 177 Iitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvt 222 (439)
|++... +.+.++.+.+..+..++.+|+.++
T Consensus 68 ilavp~----------------~~~~~vl~~l~~~~~~~~ii~d~~ 97 (735)
T PRK14806 68 VLAVPV----------------LAMEKVLADLKPLLSEHAIVTDVG 97 (735)
T ss_pred EECCCH----------------HHHHHHHHHHHHhcCCCcEEEEcC
Confidence 997431 223444445554434566665554
No 227
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.20 E-value=0.7 Score=43.63 Aligned_cols=75 Identities=23% Similarity=0.214 Sum_probs=47.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEE-ecC--cc-----
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----- 167 (439)
..++.|+||+|.+|.+++..|+..+. .|.+ .+++.+.++....++... ..++.. ..| ++
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~-----~Vi~----~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~ 73 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGV-----NVGL----LARTEENLKAVAEEVEAY----GVKVVIATADVSDYEEVTA 73 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHHh----CCeEEEEECCCCCHHHHHH
Confidence 35799999999999999999988763 2544 356656655555555421 112222 111 11
Q ss_pred ------cccCCCcEEEEeCCcC
Q 013619 168 ------ELFEDAEWALLIGAKP 183 (439)
Q Consensus 168 ------eal~dADiVIitag~~ 183 (439)
+.+.+.|+||.++|..
T Consensus 74 ~~~~~~~~~~~id~vi~~ag~~ 95 (239)
T PRK07666 74 AIEQLKNELGSIDILINNAGIS 95 (239)
T ss_pred HHHHHHHHcCCccEEEEcCccc
Confidence 1234789999988764
No 228
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=94.20 E-value=0.17 Score=49.53 Aligned_cols=101 Identities=23% Similarity=0.226 Sum_probs=58.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCC-cE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA-EW 175 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA-Di 175 (439)
|+|.|+||+|+||++++..|+..+. ++.. .++......... .+..+.. ..+.-.....+.+++. |.
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~-----~V~~----~~r~~~~~~~~~---~~~~~~~-~d~~~~~~~~~~~~~~~d~ 67 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGH-----DVRG----LDRLRDGLDPLL---SGVEFVV-LDLTDRDLVDELAKGVPDA 67 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCC-----eEEE----EeCCCccccccc---cccceee-ecccchHHHHHHHhcCCCE
Confidence 3599999999999999999998642 2333 233322222110 0000000 0000001123445556 99
Q ss_pred EEEeCCcCCCCCCch---hhhHHHHHHHHHHHHHHHHh
Q 013619 176 ALLIGAKPRGPGMER---AGLLDINGQIFAEQGKALNA 210 (439)
Q Consensus 176 VIitag~~~kpg~~r---~~ll~~N~~ii~~i~~~i~~ 210 (439)
||.+++....++..+ .+....|+.-...+.+...+
T Consensus 68 vih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~ 105 (314)
T COG0451 68 VIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARA 105 (314)
T ss_pred EEEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 999988655444332 24788899999999988887
No 229
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=94.19 E-value=0.13 Score=50.35 Aligned_cols=116 Identities=20% Similarity=0.186 Sum_probs=60.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccE--EEe--cCcccccCC-
Q 013619 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREV--KIG--INPYELFED- 172 (439)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v--~i~--~~~~eal~d- 172 (439)
||.|+||+|.+|.+++..|+..+-- ..+.+ ++........+ ...++... +...-+ .++ .+..+++++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~---~~v~~--~~~~~~~~~~~-~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~ 72 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPD---AEVIV--LDKLTYAGNLE-NLADLEDN--PRYRFVKGDIGDRELVSRLFTEH 72 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCC---CEEEE--ecCCCcchhhh-hhhhhccC--CCcEEEEcCCcCHHHHHHHHhhc
Confidence 5899999999999999999875411 12333 21111001111 11122111 000001 111 112234555
Q ss_pred -CcEEEEeCCcCCC--CCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeC
Q 013619 173 -AEWALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (439)
Q Consensus 173 -ADiVIitag~~~k--pg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvt 222 (439)
+|+||.+++.... ....-...+..|..-...+++.+.+. ..+..++.++
T Consensus 73 ~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~i~~S 124 (317)
T TIGR01181 73 QPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKY-WHEFRFHHIS 124 (317)
T ss_pred CCCEEEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhc-CCCceEEEee
Confidence 8999998875321 11223345677888888888888775 3455566554
No 230
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=94.17 E-value=0.4 Score=45.87 Aligned_cols=47 Identities=23% Similarity=0.175 Sum_probs=35.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhc
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~ 151 (439)
..++.|+||+|.||.+++..|+..+. .+.+ .+++.++++....++.+
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~G~-----~vvl----~~r~~~~~~~~~~~l~~ 55 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYGA-----EIII----NDITAERAELAVAKLRQ 55 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCC-----EEEE----EcCCHHHHHHHHHHHHh
Confidence 45899999999999999999998763 2555 46666777666666653
No 231
>PRK07890 short chain dehydrogenase; Provisional
Probab=94.16 E-value=0.52 Score=44.93 Aligned_cols=78 Identities=19% Similarity=0.178 Sum_probs=47.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCccc-------
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE------- 168 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~e------- 168 (439)
.++|.|+||+|.||.+++..|+..+. .+.+ .+++.+.++....++.... ....-+..-..+.+
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~ 74 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGA-----DVVL----AARTAERLDEVAAEIDDLG-RRALAVPTDITDEDQCANLVA 74 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHHhC-CceEEEecCCCCHHHHHHHHH
Confidence 46899999999999999999998764 2544 3566666665555554221 00000111111122
Q ss_pred ----ccCCCcEEEEeCCcC
Q 013619 169 ----LFEDAEWALLIGAKP 183 (439)
Q Consensus 169 ----al~dADiVIitag~~ 183 (439)
.+...|+||..+|..
T Consensus 75 ~~~~~~g~~d~vi~~ag~~ 93 (258)
T PRK07890 75 LALERFGRVDALVNNAFRV 93 (258)
T ss_pred HHHHHcCCccEEEECCccC
Confidence 235689999998863
No 232
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=94.16 E-value=0.15 Score=49.77 Aligned_cols=96 Identities=15% Similarity=0.200 Sum_probs=58.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCC--CcE
Q 013619 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED--AEW 175 (439)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~d--ADi 175 (439)
||.|+||+|.||++++..|+..+. ++.+ .+++ ..|+.+.. ...+++++ .|+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~-----~v~~----~~r~-------~~d~~~~~-----------~~~~~~~~~~~d~ 53 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR-----VVVA----LTSS-------QLDLTDPE-----------ALERLLRAIRPDA 53 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC-----EEEE----eCCc-------ccCCCCHH-----------HHHHHHHhCCCCE
Confidence 689999999999999999987652 2433 2322 11221110 11233444 499
Q ss_pred EEEeCCcCCCCC--CchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 176 ALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 176 VIitag~~~kpg--~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
||.+++....+. ......+..|......+++.+.+. +. .+|.++.
T Consensus 54 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~--~~v~~Ss 100 (287)
T TIGR01214 54 VVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARH-GA--RLVHIST 100 (287)
T ss_pred EEECCccccccccccCHHHHHHHHHHHHHHHHHHHHHc-CC--eEEEEee
Confidence 999987643221 123456778888888888887764 32 4555543
No 233
>PRK12827 short chain dehydrogenase; Provisional
Probab=94.15 E-value=1.1 Score=42.34 Aligned_cols=119 Identities=13% Similarity=0.141 Sum_probs=61.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEe-c--Ccccc---
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I--NPYEL--- 169 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~-~--~~~ea--- 169 (439)
.++|.|+||+|.+|.+++..|+..+. .+.+.......+.+.++....++... ..++... . .+.+.
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g~-----~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~ 76 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADGA-----DVIVLDIHPMRGRAEADAVAAGIEAA----GGKALGLAFDVRDFAATRA 76 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----eEEEEcCcccccHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHH
Confidence 46899999999999999999998653 24442111123344444444444321 1122211 1 11211
Q ss_pred --------cCCCcEEEEeCCcCC-CCC--Cch---hhhHHHHHHHHHHHHHHHH----hhcCCCeEEEEeCCc
Q 013619 170 --------FEDAEWALLIGAKPR-GPG--MER---AGLLDINGQIFAEQGKALN----AVASRNVKVIVVGNP 224 (439)
Q Consensus 170 --------l~dADiVIitag~~~-kpg--~~r---~~ll~~N~~ii~~i~~~i~----~~a~p~aivIvvtNP 224 (439)
....|.||..+|... ++- .+. ...+..|..-...+.+.+. +. ...+.+++++-.
T Consensus 77 ~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~~iv~~sS~ 148 (249)
T PRK12827 77 ALDAGVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRA-RRGGRIVNIASV 148 (249)
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CCCeEEEEECCc
Confidence 246899999988643 111 111 2235556555555555444 11 133456666554
No 234
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=94.14 E-value=0.34 Score=46.10 Aligned_cols=112 Identities=13% Similarity=0.142 Sum_probs=61.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEE-ec--Ccccc-----
Q 013619 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NPYEL----- 169 (439)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i-~~--~~~ea----- 169 (439)
++.|+||+|.||.+++..|+..+. .+.+ .+++.+.++....++.... .++.. .. .+.+.
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~~~i~~~~ 68 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGF-----AVAV----ADLNEETAKETAKEINQAG----GKAVAYKLDVSDKDQVFSAI 68 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CeEEEEEcCCCCHHHHHHHH
Confidence 689999999999999999998763 2444 3455555555555554221 11111 11 12222
Q ss_pred ------cCCCcEEEEeCCcCC-CC--CCchh---hhHHHHH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 170 ------FEDAEWALLIGAKPR-GP--GMERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 170 ------l~dADiVIitag~~~-kp--g~~r~---~ll~~N~----~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
+...|+||..+|... .+ ..+.. ..+..|. .+++.+.+.+.+. +..+.+++++.
T Consensus 69 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~~iv~~sS 137 (254)
T TIGR02415 69 DQAAEKFGGFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQ-GHGGKIINAAS 137 (254)
T ss_pred HHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhC-CCCeEEEEecc
Confidence 235699999887532 11 12222 2244443 2344555666654 34466666543
No 235
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=94.14 E-value=0.16 Score=53.46 Aligned_cols=106 Identities=21% Similarity=0.253 Sum_probs=64.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (439)
+..+|.|||+ |.+|..++..|...+. ..|.+ .+++.+++...+.++.. .+....+..+.+.++|
T Consensus 181 ~~~~vlViGa-G~iG~~~a~~L~~~G~----~~V~v----~~r~~~ra~~la~~~g~-------~~~~~~~~~~~l~~aD 244 (423)
T PRK00045 181 SGKKVLVIGA-GEMGELVAKHLAEKGV----RKITV----ANRTLERAEELAEEFGG-------EAIPLDELPEALAEAD 244 (423)
T ss_pred cCCEEEEECc-hHHHHHHHHHHHHCCC----CeEEE----EeCCHHHHHHHHHHcCC-------cEeeHHHHHHHhccCC
Confidence 4479999995 9999999998886653 23555 47777777666655421 1111234457788999
Q ss_pred EEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHH
Q 013619 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (439)
Q Consensus 175 iVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~ 228 (439)
+||.+.|.|. |-.+. ..+... +........+++-+++|-|+=
T Consensus 245 vVI~aT~s~~-~~i~~--------~~l~~~---~~~~~~~~~vviDla~Prdid 286 (423)
T PRK00045 245 IVISSTGAPH-PIIGK--------GMVERA---LKARRHRPLLLVDLAVPRDIE 286 (423)
T ss_pred EEEECCCCCC-cEEcH--------HHHHHH---HhhccCCCeEEEEeCCCCCCc
Confidence 9999866542 11111 112221 111102457899999997653
No 236
>PRK06180 short chain dehydrogenase; Provisional
Probab=94.14 E-value=0.23 Score=48.47 Aligned_cols=40 Identities=18% Similarity=0.082 Sum_probs=29.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHH
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG 144 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g 144 (439)
+++|.|+||+|.||.+++..|+..+. .+.+ .+++.++++.
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~-----~V~~----~~r~~~~~~~ 43 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGH-----RVVG----TVRSEAARAD 43 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcC-----EEEE----EeCCHHHHHH
Confidence 45799999999999999999988653 2444 3566555543
No 237
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=94.14 E-value=0.45 Score=50.88 Aligned_cols=103 Identities=16% Similarity=0.170 Sum_probs=59.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCccc---ccCCCc
Q 013619 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE---LFEDAE 174 (439)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~e---al~dAD 174 (439)
+|+||| .|.+|.++|..|+..+. ++.+ .|++.++++..+.+.... ..+....+..+ .++++|
T Consensus 1 ~IG~IG-LG~MG~~mA~nL~~~G~-----~V~v----~drt~~~~~~l~~~~~~g-----~~~~~~~s~~e~v~~l~~~d 65 (467)
T TIGR00873 1 DIGVIG-LAVMGSNLALNMADHGF-----TVSV----YNRTPEKTDEFLAEHAKG-----KKIVGAYSIEEFVQSLERPR 65 (467)
T ss_pred CEEEEe-eHHHHHHHHHHHHhcCC-----eEEE----EeCCHHHHHHHHhhccCC-----CCceecCCHHHHHhhcCCCC
Confidence 489999 69999999999998763 2555 467777766543321100 01122222222 445789
Q ss_pred EEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCC--chhHHHH
Q 013619 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN--PCNTNAL 230 (439)
Q Consensus 175 iVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtN--Pvd~~t~ 230 (439)
+||++. +++ +.+.++...+..+..++.+||..+| |.++.-.
T Consensus 66 vIil~v----~~~-----------~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~ 108 (467)
T TIGR00873 66 KIMLMV----KAG-----------APVDAVINQLLPLLEKGDIIIDGGNSHYPDTERR 108 (467)
T ss_pred EEEEEC----CCc-----------HHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHH
Confidence 888873 222 2233333444444356778999987 5665433
No 238
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.13 E-value=0.17 Score=44.39 Aligned_cols=78 Identities=21% Similarity=0.129 Sum_probs=46.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEeccc---------------ccchhhHHHHHHHHhcccCCCCccE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS---------------ERSLQALEGVAMELEDSLFPLLREV 160 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~---------------d~~~e~l~g~a~DL~~~~~~~~~~v 160 (439)
..||.|+|+ |.+|+.++..|+..++- .|.|.+.|. |....|.+..+..|+... |.. ++
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~----~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~n-p~~-~v 74 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSGVG----KITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEIN-PDV-EV 74 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHTTS----EEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHS-TTS-EE
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhCCC----ceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhc-Cce-ee
Confidence 359999995 99999999999988862 255544221 122334555555554332 332 23
Q ss_pred EEecC------cccccCCCcEEEEeC
Q 013619 161 KIGIN------PYELFEDAEWALLIG 180 (439)
Q Consensus 161 ~i~~~------~~eal~dADiVIita 180 (439)
+.... ..+.++++|+||.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~d~vi~~~ 100 (135)
T PF00899_consen 75 EAIPEKIDEENIEELLKDYDIVIDCV 100 (135)
T ss_dssp EEEESHCSHHHHHHHHHTSSEEEEES
T ss_pred eeeecccccccccccccCCCEEEEec
Confidence 33222 225577999998873
No 239
>PRK06197 short chain dehydrogenase; Provisional
Probab=94.07 E-value=0.6 Score=46.25 Aligned_cols=116 Identities=16% Similarity=0.117 Sum_probs=64.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEE-ecC--ccc----
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e---- 168 (439)
.++|.|+||+|.||.+++..|+..+. .+.+ ..++.++++....++.... + ..++.. ..| +.+
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~G~-----~vi~----~~r~~~~~~~~~~~l~~~~-~-~~~~~~~~~Dl~d~~~v~~ 84 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAKGA-----HVVL----AVRNLDKGKAAAARITAAT-P-GADVTLQELDLTSLASVRA 84 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHHhC-C-CCceEEEECCCCCHHHHHH
Confidence 45899999999999999999998763 2444 3455566554445554211 1 011211 111 111
Q ss_pred -------ccCCCcEEEEeCCcCCCCC-Cc---hhhhHHHHH----HHHHHHHHHHHhhcCCCeEEEEeCCc
Q 013619 169 -------LFEDAEWALLIGAKPRGPG-ME---RAGLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 169 -------al~dADiVIitag~~~kpg-~~---r~~ll~~N~----~ii~~i~~~i~~~a~p~aivIvvtNP 224 (439)
.+...|++|..+|....+. .+ -...+..|. .+...+.+.+++. ..+.||+++..
T Consensus 85 ~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~--~~~~iV~vSS~ 153 (306)
T PRK06197 85 AADALRAAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPV--PGSRVVTVSSG 153 (306)
T ss_pred HHHHHHhhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhC--CCCEEEEECCH
Confidence 2345899999988532111 11 112234443 3356666666653 34667777654
No 240
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=94.06 E-value=0.1 Score=54.84 Aligned_cols=73 Identities=15% Similarity=0.174 Sum_probs=52.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (439)
..||.|||| |.+|..++..|...+.- .|.+ .+++.++++.++.++... .+....+.++.+.+||+
T Consensus 181 ~kkvlviGa-G~~a~~va~~L~~~g~~----~I~V----~nRt~~ra~~La~~~~~~------~~~~~~~l~~~l~~aDi 245 (414)
T PRK13940 181 SKNVLIIGA-GQTGELLFRHVTALAPK----QIML----ANRTIEKAQKITSAFRNA------SAHYLSELPQLIKKADI 245 (414)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCC----EEEE----ECCCHHHHHHHHHHhcCC------eEecHHHHHHHhccCCE
Confidence 368999995 99999999999877652 3666 578877777776655311 11112345788999999
Q ss_pred EEEeCCcC
Q 013619 176 ALLIGAKP 183 (439)
Q Consensus 176 VIitag~~ 183 (439)
||.+-+.|
T Consensus 246 VI~aT~a~ 253 (414)
T PRK13940 246 IIAAVNVL 253 (414)
T ss_pred EEECcCCC
Confidence 99986655
No 241
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=94.01 E-value=0.25 Score=50.34 Aligned_cols=91 Identities=13% Similarity=0.087 Sum_probs=53.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (439)
.+||+||| .|.||..+|..|...+. .|.. .|++.+... +. .....+..+.+++||+
T Consensus 146 g~~VgIIG-~G~IG~~vA~~L~~~G~-----~V~~----~d~~~~~~~----~~----------~~~~~~l~ell~~aDi 201 (330)
T PRK12480 146 NMTVAIIG-TGRIGAATAKIYAGFGA-----TITA----YDAYPNKDL----DF----------LTYKDSVKEAIKDADI 201 (330)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCC-----EEEE----EeCChhHhh----hh----------hhccCCHHHHHhcCCE
Confidence 36899999 59999999999876442 3544 355433211 00 0122346788999999
Q ss_pred EEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 013619 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 176 VIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNP 224 (439)
|++... ... .+..++. .+.+... .+++++|+++-=
T Consensus 202 Vil~lP-----~t~------~t~~li~--~~~l~~m-k~gavlIN~aRG 236 (330)
T PRK12480 202 ISLHVP-----ANK------ESYHLFD--KAMFDHV-KKGAILVNAARG 236 (330)
T ss_pred EEEeCC-----CcH------HHHHHHh--HHHHhcC-CCCcEEEEcCCc
Confidence 998732 111 0112221 1333443 578899999843
No 242
>PLN00203 glutamyl-tRNA reductase
Probab=94.01 E-value=0.15 Score=55.05 Aligned_cols=74 Identities=16% Similarity=0.122 Sum_probs=50.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (439)
..||.|||| |.+|..++..|...+. ..|.+ .+++.++++.++..+.... ..+....+..+.+.+||+
T Consensus 266 ~kkVlVIGA-G~mG~~~a~~L~~~G~----~~V~V----~nRs~era~~La~~~~g~~----i~~~~~~dl~~al~~aDV 332 (519)
T PLN00203 266 SARVLVIGA-GKMGKLLVKHLVSKGC----TKMVV----VNRSEERVAALREEFPDVE----IIYKPLDEMLACAAEADV 332 (519)
T ss_pred CCEEEEEeC-HHHHHHHHHHHHhCCC----CeEEE----EeCCHHHHHHHHHHhCCCc----eEeecHhhHHHHHhcCCE
Confidence 469999996 9999999999987664 23655 4778788777665543110 011112345678899999
Q ss_pred EEEeCCc
Q 013619 176 ALLIGAK 182 (439)
Q Consensus 176 VIitag~ 182 (439)
||.+-+.
T Consensus 333 VIsAT~s 339 (519)
T PLN00203 333 VFTSTSS 339 (519)
T ss_pred EEEccCC
Confidence 9987543
No 243
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=93.95 E-value=0.051 Score=50.96 Aligned_cols=159 Identities=15% Similarity=0.112 Sum_probs=83.9
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEe--cCcccccCCC--c
Q 013619 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFEDA--E 174 (439)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~--~~~~eal~dA--D 174 (439)
|.|+||+|.||++++..|+..+. ..+.+ . ........... ..... + ....+. ....+.+++. |
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~----~v~~~--~--~~~~~~~~~~~--~~~~~--~-~~~dl~~~~~~~~~~~~~~~d 67 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGH----EVIVL--S--RSSNSESFEEK--KLNVE--F-VIGDLTDKEQLEKLLEKANID 67 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTT----EEEEE--E--SCSTGGHHHHH--HTTEE--E-EESETTSHHHHHHHHHHHTES
T ss_pred EEEEccCCHHHHHHHHHHHHcCC----ccccc--c--ccccccccccc--cceEE--E-EEeeccccccccccccccCce
Confidence 78999999999999999998764 11323 1 11111111111 00110 0 000011 1123455555 9
Q ss_pred EEEEeCCcCC--CCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCC--C-------Cc
Q 013619 175 WALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIP--A-------KN 243 (439)
Q Consensus 175 iVIitag~~~--kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p--~-------kv 243 (439)
.||.+++.+. .....-.+....|......+.+.+.+. +. ..+|.++. ..... ... ..+ . ..
T Consensus 68 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~-~~~i~~sS-~~~y~----~~~-~~~~~e~~~~~~~~~ 139 (236)
T PF01370_consen 68 VVIHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREA-GV-KRFIFLSS-ASVYG----DPD-GEPIDEDSPINPLSP 139 (236)
T ss_dssp EEEEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-TT-SEEEEEEE-GGGGT----SSS-SSSBETTSGCCHSSH
T ss_pred EEEEeeccccccccccccccccccccccccccccccccc-cc-cccccccc-ccccc----ccc-ccccccccccccccc
Confidence 9999988653 011234567888999999999999986 33 45565554 22110 000 011 0 01
Q ss_pred eeccccchHHHHHHHHHHHhCCCcccceeeEEEecc
Q 013619 244 FHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNH 279 (439)
Q Consensus 244 ig~gt~LDs~R~~~~lA~~lgv~~~~V~~~~V~GeH 279 (439)
.+. +-....++-...+++.++....++...|.|.+
T Consensus 140 Y~~-~K~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~ 174 (236)
T PF01370_consen 140 YGA-SKRAAEELLRDYAKKYGLRVTILRPPNVYGPG 174 (236)
T ss_dssp HHH-HHHHHHHHHHHHHHHHTSEEEEEEESEEESTT
T ss_pred ccc-cccccccccccccccccccccccccccccccc
Confidence 111 11122334444555668888888776678865
No 244
>PRK06198 short chain dehydrogenase; Provisional
Probab=93.94 E-value=1 Score=43.06 Aligned_cols=46 Identities=17% Similarity=0.133 Sum_probs=32.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHH
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL 149 (439)
.++|.|+||+|.||..++..|+..+. ..|.+ .+++.+.+.....++
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~G~----~~V~~----~~r~~~~~~~~~~~l 51 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAERGA----AGLVI----CGRNAEKGEAQAAEL 51 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC----CeEEE----EcCCHHHHHHHHHHH
Confidence 35899999999999999999997763 11444 355555555444444
No 245
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=93.94 E-value=0.45 Score=45.45 Aligned_cols=120 Identities=13% Similarity=0.087 Sum_probs=65.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCccc-----
Q 013619 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE----- 168 (439)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~e----- 168 (439)
-+.++|.|+||+|.||.+++..|+..+. .|.+ .+++.+.++....++.... ....-+..-..+++
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~ 78 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA-----HVLV----NGRNAATLEAAVAALRAAG-GAAEALAFDIADEEAVAAA 78 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC-----eEEE----EeCCHHHHHHHHHHHHhcC-CceEEEEccCCCHHHHHHH
Confidence 3457899999999999999999997663 2555 3666666666666664321 00000111011111
Q ss_pred ------ccCCCcEEEEeCCcCCC-C--CCch---hhhHHHHHH----HHHHHHHHHHhhcCCCeEEEEeCCch
Q 013619 169 ------LFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (439)
Q Consensus 169 ------al~dADiVIitag~~~k-p--g~~r---~~ll~~N~~----ii~~i~~~i~~~a~p~aivIvvtNPv 225 (439)
.+...|+||..+|.... + ..+. ...+..|.. +.+.+.+.+.+. ..+.+|+++...
T Consensus 79 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~iv~~ss~~ 149 (256)
T PRK06124 79 FARIDAEHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQ--GYGRIIAITSIA 149 (256)
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEEeech
Confidence 12345899998875321 1 1111 123445543 333333555442 456777777653
No 246
>PLN02712 arogenate dehydrogenase
Probab=93.94 E-value=0.31 Score=54.32 Aligned_cols=65 Identities=25% Similarity=0.288 Sum_probs=39.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCccccc-CC
Q 013619 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-ED 172 (439)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal-~d 172 (439)
.+++||+||| .|.+|..++..|...+. .|.. +|++.... .+.++. +....+..+.+ ++
T Consensus 50 ~~~~kIgIIG-~G~mG~slA~~L~~~G~-----~V~~----~dr~~~~~--~A~~~G---------v~~~~d~~e~~~~~ 108 (667)
T PLN02712 50 TTQLKIAIIG-FGNYGQFLAKTLISQGH-----TVLA----HSRSDHSL--AARSLG---------VSFFLDPHDLCERH 108 (667)
T ss_pred CCCCEEEEEc-cCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHH--HHHHcC---------CEEeCCHHHHhhcC
Confidence 4567999999 59999999999987652 2444 34442221 222221 12233344434 57
Q ss_pred CcEEEEe
Q 013619 173 AEWALLI 179 (439)
Q Consensus 173 ADiVIit 179 (439)
||+||++
T Consensus 109 aDvViLa 115 (667)
T PLN02712 109 PDVILLC 115 (667)
T ss_pred CCEEEEc
Confidence 9999998
No 247
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.93 E-value=1.2 Score=41.83 Aligned_cols=47 Identities=19% Similarity=0.177 Sum_probs=32.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHh
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~ 150 (439)
+.+|.|+||+|.+|..++..|+..+. .+.+. .+++.+.++....++.
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~-----~v~~~---~~r~~~~~~~~~~~~~ 51 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGA-----KVVIA---YDINEEAAQELLEEIK 51 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE---cCCCHHHHHHHHHHHH
Confidence 34899999999999999999987653 24331 1555555554444444
No 248
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=93.92 E-value=0.98 Score=42.94 Aligned_cols=119 Identities=18% Similarity=0.141 Sum_probs=65.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCC--ccEEEecCc------
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL--REVKIGINP------ 166 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~--~~v~i~~~~------ 166 (439)
+.++|.|+||+|.+|.+++..|+..+. .+.+ .+++.+.++....++.+...... ....+...+
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~G~-----~Vi~----~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 81 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARHGA-----TVIL----LGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQ 81 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-----cEEE----EeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHH
Confidence 456899999999999999999998653 2444 35666666666666654321100 011111001
Q ss_pred -----ccccCCCcEEEEeCCcCC--CC--CCch---hhhHHHHHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 013619 167 -----YELFEDAEWALLIGAKPR--GP--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 167 -----~eal~dADiVIitag~~~--kp--g~~r---~~ll~~N~~----ii~~i~~~i~~~a~p~aivIvvtNP 224 (439)
.+.+...|+||..+|... .+ ..+. ...+..|.. ..+.+.+.+.+. +.+.|++++.-
T Consensus 82 ~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~--~~~~iv~~ss~ 153 (247)
T PRK08945 82 LADTIEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKS--PAASLVFTSSS 153 (247)
T ss_pred HHHHHHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhC--CCCEEEEEccH
Confidence 123346799999887532 22 1122 223445543 233444444442 45566666653
No 249
>PRK05717 oxidoreductase; Validated
Probab=93.89 E-value=0.14 Score=49.13 Aligned_cols=25 Identities=28% Similarity=0.029 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~ 120 (439)
.++|.|+||+|.||.+++..|+..+
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g 34 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEG 34 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcC
Confidence 3589999999999999999999865
No 250
>PRK06139 short chain dehydrogenase; Provisional
Probab=93.86 E-value=0.45 Score=48.30 Aligned_cols=115 Identities=12% Similarity=-0.030 Sum_probs=65.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCC-ccEEEecCccc------
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGINPYE------ 168 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~-~~v~i~~~~~e------ 168 (439)
..+|.|+||+|.||.+++..|+..+. .|.+ .++++++++..+.++........ ....++ +.+
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~-----~Vvl----~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~--d~~~v~~~~ 75 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGA-----RLVL----AARDEEALQAVAEECRALGAEVLVVPTDVT--DADQVKALA 75 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcCCcEEEEEeeCC--CHHHHHHHH
Confidence 35899999999999999999998763 2555 46777888777666653210000 011111 111
Q ss_pred -----ccCCCcEEEEeCCcCCCC--CC----chhhhHHHHHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 169 -----LFEDAEWALLIGAKPRGP--GM----ERAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 169 -----al~dADiVIitag~~~kp--g~----~r~~ll~~N~~----ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
.+...|++|..+|..... .. +-...++.|.- +.+...+.+.+. ..+.||+++.
T Consensus 76 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~--~~g~iV~isS 143 (330)
T PRK06139 76 TQAASFGGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQ--GHGIFINMIS 143 (330)
T ss_pred HHHHHhcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHc--CCCEEEEEcC
Confidence 124679999998864311 11 11223444422 334444555553 3466776654
No 251
>PRK06823 ornithine cyclodeaminase; Validated
Probab=93.85 E-value=0.23 Score=50.34 Aligned_cols=75 Identities=19% Similarity=0.127 Sum_probs=54.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCC
Q 013619 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (439)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (439)
+....++|||+ |..+..-+..++...-+ ++|.+ .+++.++++..+..+++. ..++.+..+..+++++|
T Consensus 126 ~d~~~l~iiG~-G~qA~~~~~a~~~v~~i---~~v~v----~~r~~~~a~~~~~~~~~~----~~~v~~~~~~~~av~~A 193 (315)
T PRK06823 126 QHVSAIGIVGT-GIQARMQLMYLKNVTDC---RQLWV----WGRSETALEEYRQYAQAL----GFAVNTTLDAAEVAHAA 193 (315)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHhcCCC---CEEEE----ECCCHHHHHHHHHHHHhc----CCcEEEECCHHHHhcCC
Confidence 34679999995 99998888777764333 34666 478888988887666532 12566677788999999
Q ss_pred cEEEEeC
Q 013619 174 EWALLIG 180 (439)
Q Consensus 174 DiVIita 180 (439)
|+|+.+-
T Consensus 194 DIV~taT 200 (315)
T PRK06823 194 NLIVTTT 200 (315)
T ss_pred CEEEEec
Confidence 9999853
No 252
>PRK07589 ornithine cyclodeaminase; Validated
Probab=93.85 E-value=0.19 Score=51.67 Aligned_cols=74 Identities=16% Similarity=0.082 Sum_probs=54.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (439)
...+++|||+ |..+.+-+..++.-.-+ ++|.+ .+++.++++..+.++.+. ..++.+..+..+++++||
T Consensus 128 da~~l~iiGa-G~QA~~~l~a~~~vr~i---~~V~v----~~r~~~~a~~~~~~~~~~----~~~v~~~~~~~~av~~AD 195 (346)
T PRK07589 128 DSRTMALIGN-GAQSEFQALAFKALLGI---EEIRL----YDIDPAATAKLARNLAGP----GLRIVACRSVAEAVEGAD 195 (346)
T ss_pred CCcEEEEECC-cHHHHHHHHHHHHhCCc---eEEEE----EeCCHHHHHHHHHHHHhc----CCcEEEeCCHHHHHhcCC
Confidence 3578999995 99998877666653222 34666 478889998888888742 125666778889999999
Q ss_pred EEEEeC
Q 013619 175 WALLIG 180 (439)
Q Consensus 175 iVIita 180 (439)
+|+.+-
T Consensus 196 IIvtaT 201 (346)
T PRK07589 196 IITTVT 201 (346)
T ss_pred EEEEec
Confidence 999853
No 253
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=93.82 E-value=0.58 Score=46.76 Aligned_cols=46 Identities=22% Similarity=0.202 Sum_probs=34.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHh
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~ 150 (439)
..+|.|+||+|.||.+++..|+..+. .|.+ .+++.++++....++.
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~~G~-----~V~~----~~r~~~~~~~~~~~l~ 51 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAKRGW-----HVIM----ACRNLKKAEAAAQELG 51 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhh
Confidence 45799999999999999999998762 2544 3566677666655553
No 254
>PRK06181 short chain dehydrogenase; Provisional
Probab=93.81 E-value=0.88 Score=43.63 Aligned_cols=74 Identities=22% Similarity=0.232 Sum_probs=46.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEe-cC--cccc----
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYEL---- 169 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~-~~--~~ea---- 169 (439)
++|.|+||+|.+|.+++..|+..+. .+.+ .+++.+.++....++.... .++.+. .| +++.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-----~Vi~----~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~~~~~~~ 68 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-----QLVL----AARNETRLASLAQELADHG----GEALVVPTDVSDAEACERL 68 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHH
Confidence 4799999999999999999987763 2444 3566566665555554321 122221 11 2221
Q ss_pred -------cCCCcEEEEeCCcC
Q 013619 170 -------FEDAEWALLIGAKP 183 (439)
Q Consensus 170 -------l~dADiVIitag~~ 183 (439)
+...|+||.++|..
T Consensus 69 ~~~~~~~~~~id~vi~~ag~~ 89 (263)
T PRK06181 69 IEAAVARFGGIDILVNNAGIT 89 (263)
T ss_pred HHHHHHHcCCCCEEEECCCcc
Confidence 23679999988753
No 255
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=93.78 E-value=0.13 Score=52.50 Aligned_cols=73 Identities=25% Similarity=0.193 Sum_probs=43.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (439)
+.+||+|+||+|.+|..+...|.....-. ..|..+..+.+..+.-+ +. . ..+.+..-+..++.++|
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~----~~l~~laS~~saG~~~~----~~----~--~~~~v~~~~~~~~~~~D 68 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPV----GELYALASEESAGETLR----FG----G--KSVTVQDAAEFDWSQAQ 68 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCc----eEEEEEEccCcCCceEE----EC----C--cceEEEeCchhhccCCC
Confidence 55799999999999999999888742211 23333333332221111 11 1 13444433344568999
Q ss_pred EEEEeCC
Q 013619 175 WALLIGA 181 (439)
Q Consensus 175 iVIitag 181 (439)
+|+++.+
T Consensus 69 vvf~a~p 75 (336)
T PRK08040 69 LAFFVAG 75 (336)
T ss_pred EEEECCC
Confidence 9999754
No 256
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=93.77 E-value=1.2 Score=42.06 Aligned_cols=46 Identities=22% Similarity=0.148 Sum_probs=33.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHh
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~ 150 (439)
.++|.|+||+|.+|.+++..|+..+. .|.+ .+++.+++.....++.
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~-----~V~~----~~r~~~~~~~~~~~l~ 51 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGA-----EVIV----VDICGDDAAATAELVE 51 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 45899999999999999999998763 2444 3556555555555554
No 257
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.76 E-value=0.3 Score=46.17 Aligned_cols=79 Identities=18% Similarity=0.087 Sum_probs=47.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEeccc---------------ccchhhHHHHHHHHhcccCCCCcc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS---------------ERSLQALEGVAMELEDSLFPLLRE 159 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~---------------d~~~e~l~g~a~DL~~~~~~~~~~ 159 (439)
+..||.|+|+ |.+|+.++..|+..++- .|.|.+.|. |+...|++..+..|.... |.. +
T Consensus 20 ~~~~VlviG~-GglGs~ia~~La~~Gv~----~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~v-~ 92 (202)
T TIGR02356 20 LNSHVLIIGA-GGLGSPAALYLAGAGVG----TIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN-SDI-Q 92 (202)
T ss_pred cCCCEEEECC-CHHHHHHHHHHHHcCCC----eEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC-CCC-E
Confidence 3459999995 99999999999998862 255543321 111334555555554332 221 2
Q ss_pred EEEec------CcccccCCCcEEEEeC
Q 013619 160 VKIGI------NPYELFEDAEWALLIG 180 (439)
Q Consensus 160 v~i~~------~~~eal~dADiVIita 180 (439)
+.... +..+.++++|+||.+.
T Consensus 93 i~~~~~~i~~~~~~~~~~~~D~Vi~~~ 119 (202)
T TIGR02356 93 VTALKERVTAENLELLINNVDLVLDCT 119 (202)
T ss_pred EEEehhcCCHHHHHHHHhCCCEEEECC
Confidence 22211 1234588999998874
No 258
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=93.76 E-value=0.82 Score=43.72 Aligned_cols=116 Identities=13% Similarity=0.090 Sum_probs=63.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEE-ec--Ccccc----
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NPYEL---- 169 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i-~~--~~~ea---- 169 (439)
.+|.|+||+|.||.+++..|+..+. .+.+ .+++.+.++..+.++.... .. .++.. .. .+.++
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~-----~vi~----~~r~~~~~~~~~~~~~~~~-~~-~~~~~~~~D~~~~~~i~~~ 71 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGY-----RVAV----ADINSEKAANVAQEINAEY-GE-GMAYGFGADATSEQSVLAL 71 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHHhc-CC-ceeEEEEccCCCHHHHHHH
Confidence 3699999999999999999998763 2544 3566566655554543221 00 01111 11 11111
Q ss_pred -------cCCCcEEEEeCCcCCCCC---Cchh---hhHHHHHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 013619 170 -------FEDAEWALLIGAKPRGPG---MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 170 -------l~dADiVIitag~~~kpg---~~r~---~ll~~N~~----ii~~i~~~i~~~a~p~aivIvvtNP 224 (439)
+...|+||..+|.+.... .... ..+..|.. +.+.+.+.+.+. +.++.+|.++..
T Consensus 72 ~~~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~~~~~iv~~ss~ 142 (259)
T PRK12384 72 SRGVDEIFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRD-GIQGRIIQINSK 142 (259)
T ss_pred HHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhC-CCCcEEEEecCc
Confidence 245799999988653211 1221 22333432 345555666553 335677777664
No 259
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=93.75 E-value=0.24 Score=47.30 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG 134 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~ 134 (439)
+..||.|||+ |.+|+.++..|+..++- .|.|.+.|
T Consensus 27 ~~~~V~ViG~-GglGs~ia~~La~~Gvg----~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGA-GGLGSNIAVALARSGVG----NLKLVDFD 61 (212)
T ss_pred hCCCEEEECc-CHHHHHHHHHHHHcCCC----eEEEEeCC
Confidence 3459999995 99999999999998863 26665443
No 260
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=93.74 E-value=0.3 Score=52.46 Aligned_cols=101 Identities=15% Similarity=0.199 Sum_probs=59.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhc-ccCCCCccEEEecCcccccC--
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED-SLFPLLREVKIGINPYELFE-- 171 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~-~~~~~~~~v~i~~~~~eal~-- 171 (439)
.+++|++|| .|.+|..+|..|+..+. ++.+ .|++.++.+.++..... .. ..+....+..+..+
T Consensus 5 ~~~~IG~IG-LG~MG~~mA~nL~~~G~-----~V~V----~NRt~~k~~~l~~~~~~~Ga----~~~~~a~s~~e~v~~l 70 (493)
T PLN02350 5 ALSRIGLAG-LAVMGQNLALNIAEKGF-----PISV----YNRTTSKVDETVERAKKEGN----LPLYGFKDPEDFVLSI 70 (493)
T ss_pred CCCCEEEEe-eHHHHHHHHHHHHhCCC-----eEEE----ECCCHHHHHHHHHhhhhcCC----cccccCCCHHHHHhcC
Confidence 456899999 79999999999998773 2555 47777776654332111 11 11222333444444
Q ss_pred -CCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 013619 172 -DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 172 -dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNP 224 (439)
.+|+||++-.. .+.+.++...+.....++.++|..+|=
T Consensus 71 ~~~dvIi~~v~~---------------~~aV~~Vi~gl~~~l~~G~iiID~sT~ 109 (493)
T PLN02350 71 QKPRSVIILVKA---------------GAPVDQTIKALSEYMEPGDCIIDGGNE 109 (493)
T ss_pred CCCCEEEEECCC---------------cHHHHHHHHHHHhhcCCCCEEEECCCC
Confidence 49999997321 122333323333333567788888865
No 261
>PRK06138 short chain dehydrogenase; Provisional
Probab=93.72 E-value=0.82 Score=43.33 Aligned_cols=45 Identities=22% Similarity=0.192 Sum_probs=32.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHH
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL 149 (439)
..+|.|+||+|.||.+++..|+..+. .+.+ .+++.+.++....++
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~ 49 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREGA-----RVVV----ADRDAEAAERVAAAI 49 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC-----eEEE----ecCCHHHHHHHHHHH
Confidence 45899999999999999999998762 2444 355656555444444
No 262
>PRK07109 short chain dehydrogenase; Provisional
Probab=93.72 E-value=0.88 Score=46.10 Aligned_cols=113 Identities=13% Similarity=0.090 Sum_probs=65.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEE-Eec--Ccccc----
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGI--NPYEL---- 169 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~-i~~--~~~ea---- 169 (439)
.+|.|+||+|.||.+++..|+..+. .+.+ .+++.++++....++.... .++. +.. .+.+.
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~-----~Vvl----~~R~~~~l~~~~~~l~~~g----~~~~~v~~Dv~d~~~v~~~ 75 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGA-----KVVL----LARGEEGLEALAAEIRAAG----GEALAVVADVADAEAVQAA 75 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHHcC----CcEEEEEecCCCHHHHHHH
Confidence 5799999999999999999998763 2555 4677777776666665321 1111 111 12222
Q ss_pred -------cCCCcEEEEeCCcCCC-C-C-Cch---hhhHHHH----HHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 013619 170 -------FEDAEWALLIGAKPRG-P-G-MER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 170 -------l~dADiVIitag~~~k-p-g-~~r---~~ll~~N----~~ii~~i~~~i~~~a~p~aivIvvtNP 224 (439)
+...|++|..+|.... + . .+. ...++.| ....+.+.+.+.+. ..+.||+++.-
T Consensus 76 ~~~~~~~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~--~~g~iV~isS~ 145 (334)
T PRK07109 76 ADRAEEELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPR--DRGAIIQVGSA 145 (334)
T ss_pred HHHHHHHCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEeCCh
Confidence 3467999998885321 1 1 111 1123333 34455566666653 34667776643
No 263
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=93.68 E-value=0.29 Score=43.18 Aligned_cols=77 Identities=16% Similarity=0.158 Sum_probs=45.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecc---------------cccchhhHHHHHHHHhcccCCCCccEEE
Q 013619 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG---------------SERSLQALEGVAMELEDSLFPLLREVKI 162 (439)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~---------------~d~~~e~l~g~a~DL~~~~~~~~~~v~i 162 (439)
||.|+|+ |.+|+.++..|+..+.- .|.|.+.| .|....+++..+..++... |.. ++..
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~----~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~-p~v-~i~~ 73 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVG----KITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELN-PGV-NVTA 73 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCC----EEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHC-CCc-EEEE
Confidence 6899995 99999999999998862 25554322 1222334444444444322 221 2222
Q ss_pred ec---Cc---ccccCCCcEEEEeCC
Q 013619 163 GI---NP---YELFEDAEWALLIGA 181 (439)
Q Consensus 163 ~~---~~---~eal~dADiVIitag 181 (439)
.. .. .+.+++.|+||.+..
T Consensus 74 ~~~~~~~~~~~~~~~~~diVi~~~d 98 (143)
T cd01483 74 VPEGISEDNLDDFLDGVDLVIDAID 98 (143)
T ss_pred EeeecChhhHHHHhcCCCEEEECCC
Confidence 11 11 355789999998743
No 264
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=93.67 E-value=0.16 Score=50.58 Aligned_cols=71 Identities=17% Similarity=0.048 Sum_probs=49.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEE-Ee--cCcccccCC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IG--INPYELFED 172 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~-i~--~~~~eal~d 172 (439)
..++.|||| |..|.++++.|...+.. .|.+ .+++.++++.++.++.... .+. +. .+..+.+.+
T Consensus 125 ~k~vlvlGa-GGaarai~~aL~~~G~~----~i~I----~nRt~~ka~~La~~~~~~~-----~~~~~~~~~~~~~~~~~ 190 (282)
T TIGR01809 125 GFRGLVIGA-GGTSRAAVYALASLGVT----DITV----INRNPDKLSRLVDLGVQVG-----VITRLEGDSGGLAIEKA 190 (282)
T ss_pred CceEEEEcC-cHHHHHHHHHHHHcCCC----eEEE----EeCCHHHHHHHHHHhhhcC-----cceeccchhhhhhcccC
Confidence 458999995 99999999999987752 3666 4788888888877664321 111 11 112356688
Q ss_pred CcEEEEeC
Q 013619 173 AEWALLIG 180 (439)
Q Consensus 173 ADiVIita 180 (439)
+|+||.+-
T Consensus 191 ~DiVInaT 198 (282)
T TIGR01809 191 AEVLVSTV 198 (282)
T ss_pred CCEEEECC
Confidence 99999974
No 265
>PRK09072 short chain dehydrogenase; Provisional
Probab=93.67 E-value=0.63 Score=44.75 Aligned_cols=75 Identities=20% Similarity=0.137 Sum_probs=46.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEE-ec--Ccccc--
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NPYEL-- 169 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i-~~--~~~ea-- 169 (439)
+..+|.|+||+|.+|..++..|+..+. .+.+ .+++.+.++....++... . ++.. .. .+.+.
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~--~---~~~~~~~D~~d~~~~~ 69 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA-----RLLL----VGRNAEKLEALAARLPYP--G---RHRWVVADLTSEAGRE 69 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHhcC--C---ceEEEEccCCCHHHHH
Confidence 345899999999999999999998763 2544 356666666554444211 1 1111 11 12221
Q ss_pred --------cCCCcEEEEeCCcC
Q 013619 170 --------FEDAEWALLIGAKP 183 (439)
Q Consensus 170 --------l~dADiVIitag~~ 183 (439)
+...|+||..+|..
T Consensus 70 ~~~~~~~~~~~id~lv~~ag~~ 91 (263)
T PRK09072 70 AVLARAREMGGINVLINNAGVN 91 (263)
T ss_pred HHHHHHHhcCCCCEEEECCCCC
Confidence 35679999998864
No 266
>PRK06199 ornithine cyclodeaminase; Validated
Probab=93.66 E-value=0.23 Score=51.69 Aligned_cols=76 Identities=14% Similarity=0.245 Sum_probs=55.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhc-CCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCC
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~-~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (439)
....++|||+ |..+.+-+..++.- +-+ ++|.+ .+++.++++..+.++.+.. +-..++.+..+..+++++|
T Consensus 154 da~~l~iiG~-G~QA~~~l~a~~~v~~~i---~~V~v----~~r~~~~a~~f~~~~~~~~-~~~~~v~~~~s~~eav~~A 224 (379)
T PRK06199 154 DSKVVGLLGP-GVMGKTILAAFMAVCPGI---DTIKI----KGRGQKSLDSFATWVAETY-PQITNVEVVDSIEEVVRGS 224 (379)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHhcCCc---cEEEE----ECCCHHHHHHHHHHHHHhc-CCCceEEEeCCHHHHHcCC
Confidence 4579999995 99998887777652 213 34666 4788899999988887431 1112477778888999999
Q ss_pred cEEEEe
Q 013619 174 EWALLI 179 (439)
Q Consensus 174 DiVIit 179 (439)
|+|+.+
T Consensus 225 DIVvta 230 (379)
T PRK06199 225 DIVTYC 230 (379)
T ss_pred CEEEEc
Confidence 999975
No 267
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=93.65 E-value=0.27 Score=46.39 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=62.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCccc-------
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE------- 168 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~e------- 168 (439)
..++.|+||+|.+|.+++..|+..+. .+.+ .+++.++++....++.... .+ ....+. +.+
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g~-----~v~~----~~~~~~~~~~~~~~~~~~~-~~-~~~D~~--~~~~~~~~~~ 72 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQGA-----IVGL----HGTRVEKLEALAAELGERV-KI-FPANLS--DRDEVKALGQ 72 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHhCCce-EE-EEccCC--CHHHHHHHHH
Confidence 46899999999999999999998763 2444 3455566665444432110 00 001111 111
Q ss_pred ----ccCCCcEEEEeCCcCCC-CC-----CchhhhHHHHHHH----HHHHHHHHHhhcCCCeEEEEeCCch
Q 013619 169 ----LFEDAEWALLIGAKPRG-PG-----MERAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNPC 225 (439)
Q Consensus 169 ----al~dADiVIitag~~~k-pg-----~~r~~ll~~N~~i----i~~i~~~i~~~a~p~aivIvvtNPv 225 (439)
.+...|+||..+|.... +. .+-...+..|..- ++.+.+.+.+. ..+.+++++...
T Consensus 73 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~~sS~~ 141 (245)
T PRK12936 73 KAEADLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRR--RYGRIINITSVV 141 (245)
T ss_pred HHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHh--CCCEEEEECCHH
Confidence 23468999999886321 11 1112234455443 33333344432 456677777653
No 268
>PRK12829 short chain dehydrogenase; Provisional
Probab=93.65 E-value=0.9 Score=43.38 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
+.++|.|+||+|.+|.+++..|+..+.
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~ 36 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGA 36 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC
Confidence 447999999999999999999998763
No 269
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=93.64 E-value=0.25 Score=51.21 Aligned_cols=79 Identities=9% Similarity=0.169 Sum_probs=50.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (439)
.+||+|||+.|.+|..++..|...+. ++.+ .|++.. .+..+.+++||+
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~-----~V~~----~d~~~~-----------------------~~~~~~~~~aDl 145 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGY-----QVRI----LEQDDW-----------------------DRAEDILADAGM 145 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCC-----eEEE----eCCCcc-----------------------hhHHHHHhcCCE
Confidence 47999999669999999999998662 2544 233210 012356789999
Q ss_pred EEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 176 VIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
||++.-.. ...+++ +.+... .|+++|+-++.
T Consensus 146 VilavP~~------------~~~~~~----~~l~~l-~~~~iv~Dv~S 176 (374)
T PRK11199 146 VIVSVPIH------------LTEEVI----ARLPPL-PEDCILVDLTS 176 (374)
T ss_pred EEEeCcHH------------HHHHHH----HHHhCC-CCCcEEEECCC
Confidence 99984211 012333 334443 57888887765
No 270
>PLN02712 arogenate dehydrogenase
Probab=93.60 E-value=0.68 Score=51.71 Aligned_cols=94 Identities=18% Similarity=0.144 Sum_probs=52.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccC-CC
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-DA 173 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~-dA 173 (439)
+++||+||| .|.+|..++..|...+. .|.. +|++.+. + .+.++ . +....+..+.+. +|
T Consensus 368 ~~~kIgIIG-lG~mG~slA~~L~~~G~-----~V~~----~dr~~~~-~-~a~~~-----G----v~~~~~~~el~~~~a 426 (667)
T PLN02712 368 SKLKIAIVG-FGNFGQFLAKTMVKQGH-----TVLA----YSRSDYS-D-EAQKL-----G----VSYFSDADDLCEEHP 426 (667)
T ss_pred CCCEEEEEe-cCHHHHHHHHHHHHCcC-----EEEE----EECChHH-H-HHHHc-----C----CeEeCCHHHHHhcCC
Confidence 568999999 59999999999987542 2444 3444221 1 22221 1 122333444454 59
Q ss_pred cEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 013619 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 174 DiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNP 224 (439)
|+||++.- + . .+..++.++... .. .++++|+-++.-
T Consensus 427 DvVILavP----~-~-------~~~~vi~~l~~~--~l-k~g~ivvDv~Sv 462 (667)
T PLN02712 427 EVILLCTS----I-L-------STEKVLKSLPFQ--RL-KRSTLFVDVLSV 462 (667)
T ss_pred CEEEECCC----h-H-------HHHHHHHHHHHh--cC-CCCcEEEECCCc
Confidence 99999732 1 1 122333333211 12 467888888655
No 271
>PRK06172 short chain dehydrogenase; Provisional
Probab=93.59 E-value=0.82 Score=43.56 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=34.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHh
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~ 150 (439)
..+|.|+||+|.||.+++..|+..+. .+.+ ++++.+.++....++.
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~ 52 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGA-----KVVV----ADRDAAGGEETVALIR 52 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 46899999999999999999998662 2544 4666666665555554
No 272
>PRK05876 short chain dehydrogenase; Provisional
Probab=93.57 E-value=0.78 Score=44.91 Aligned_cols=113 Identities=13% Similarity=0.080 Sum_probs=63.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEE-ecC--cc------
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY------ 167 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i-~~~--~~------ 167 (439)
..+.|+||+|.||.+++..|+..+. .+.+ .+++.+.++....+|.... .++.. ..| +.
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~-----~Vv~----~~r~~~~l~~~~~~l~~~~----~~~~~~~~Dv~d~~~v~~~ 73 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGA-----RVVL----GDVDKPGLRQAVNHLRAEG----FDVHGVMCDVRHREEVTHL 73 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CeEEEEeCCCCCHHHHHHH
Confidence 4699999999999999999998763 2544 3566666766666664221 01111 111 11
Q ss_pred -----cccCCCcEEEEeCCcCCC-C--CCch---hhhHHHHH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 168 -----ELFEDAEWALLIGAKPRG-P--GMER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 168 -----eal~dADiVIitag~~~k-p--g~~r---~~ll~~N~----~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
+.+...|++|..+|.... + ..+. ...++.|. .+++.+.+.+.+. +..+.|++++.
T Consensus 74 ~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~-~~~g~iv~isS 143 (275)
T PRK05876 74 ADEAFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQ-GTGGHVVFTAS 143 (275)
T ss_pred HHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCCCEEEEeCC
Confidence 122357999999886421 1 1121 22344453 3444445555554 33466777765
No 273
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=93.57 E-value=0.11 Score=53.70 Aligned_cols=74 Identities=20% Similarity=0.263 Sum_probs=45.4
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecC----cccccCCCc
Q 013619 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN----PYELFEDAE 174 (439)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~----~~eal~dAD 174 (439)
|.|+|| |.||+.++..|+...... .|.+ .|++.++++..+..+... ....+.+-.. ..+.++++|
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~---~v~v----a~r~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~l~~~~~~~d 69 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFE---EVTV----ADRNPEKAERLAEKLLGD---RVEAVQVDVNDPESLAELLRGCD 69 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE----EEEE----EESSHHHHHHHHT--TTT---TEEEEE--TTTHHHHHHHHTTSS
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCC---cEEE----EECCHHHHHHHHhhcccc---ceeEEEEecCCHHHHHHHHhcCC
Confidence 789997 999999999999876432 3666 588888888776543111 1111222222 345789999
Q ss_pred EEEEeCCcC
Q 013619 175 WALLIGAKP 183 (439)
Q Consensus 175 iVIitag~~ 183 (439)
+||.++|..
T Consensus 70 vVin~~gp~ 78 (386)
T PF03435_consen 70 VVINCAGPF 78 (386)
T ss_dssp EEEE-SSGG
T ss_pred EEEECCccc
Confidence 999997743
No 274
>PRK05867 short chain dehydrogenase; Provisional
Probab=93.53 E-value=1.1 Score=42.80 Aligned_cols=75 Identities=19% Similarity=0.148 Sum_probs=48.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEE-ec--Ccc-----
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NPY----- 167 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i-~~--~~~----- 167 (439)
..++.|+||+|.||.+++..|+..+. .+.+ .+++.++++..+.++.+.. .++.. .. .++
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~~ 75 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGA-----QVAI----AARHLDALEKLADEIGTSG----GKVVPVCCDVSQHQQVTS 75 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHHHhcC----CeEEEEEccCCCHHHHHH
Confidence 35799999999999999999998763 2555 3566677776666664321 11111 11 111
Q ss_pred ------cccCCCcEEEEeCCcC
Q 013619 168 ------ELFEDAEWALLIGAKP 183 (439)
Q Consensus 168 ------eal~dADiVIitag~~ 183 (439)
+.+...|++|..+|..
T Consensus 76 ~~~~~~~~~g~id~lv~~ag~~ 97 (253)
T PRK05867 76 MLDQVTAELGGIDIAVCNAGII 97 (253)
T ss_pred HHHHHHHHhCCCCEEEECCCCC
Confidence 2234789999988864
No 275
>PRK06182 short chain dehydrogenase; Validated
Probab=93.50 E-value=0.26 Score=47.76 Aligned_cols=110 Identities=14% Similarity=0.048 Sum_probs=60.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCccc----c--
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE----L-- 169 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~e----a-- 169 (439)
.++|.|+||+|.+|.+++..|+..+. .+.+ .+++.++++.... ... .+ ....++ +.+ .
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~-----~V~~----~~r~~~~l~~~~~---~~~-~~-~~~Dv~--~~~~~~~~~~ 66 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGY-----TVYG----AARRVDKMEDLAS---LGV-HP-LSLDVT--DEASIKAAVD 66 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHh---CCC-eE-EEeeCC--CHHHHHHHHH
Confidence 45899999999999999999987653 2444 3566565543321 111 00 011111 111 1
Q ss_pred -----cCCCcEEEEeCCcCCC-C--C---CchhhhHHHHH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 170 -----FEDAEWALLIGAKPRG-P--G---MERAGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 170 -----l~dADiVIitag~~~k-p--g---~~r~~ll~~N~----~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
..+.|++|..+|.... + . .+-...++.|. .+++.+.+.+++. ..+.||+++.
T Consensus 67 ~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~--~~g~iv~isS 133 (273)
T PRK06182 67 TIIAEEGRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQ--RSGRIINISS 133 (273)
T ss_pred HHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhc--CCCEEEEEcc
Confidence 2368999999886421 1 1 11223344553 3355566666664 3356666665
No 276
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=93.49 E-value=0.41 Score=45.11 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=25.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEe
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL 132 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l 132 (439)
..||.|+|+ |.+|+.++..|+..++- .|.|.+
T Consensus 19 ~s~VlviG~-gglGsevak~L~~~GVg----~i~lvD 50 (198)
T cd01485 19 SAKVLIIGA-GALGAEIAKNLVLAGID----SITIVD 50 (198)
T ss_pred hCcEEEECC-CHHHHHHHHHHHHcCCC----EEEEEE
Confidence 359999995 99999999999998862 266644
No 277
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=93.49 E-value=0.25 Score=49.45 Aligned_cols=103 Identities=17% Similarity=0.317 Sum_probs=66.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (439)
..+|+.|| .|++|++++..|+..+. .++.+ |++.++ +.+|++.- .++...+.|..++||+
T Consensus 35 ~~~iGFIG-LG~MG~~M~~nLik~G~-----kVtV~----dr~~~k----~~~f~~~G------a~v~~sPaeVae~sDv 94 (327)
T KOG0409|consen 35 KTRIGFIG-LGNMGSAMVSNLIKAGY-----KVTVY----DRTKDK----CKEFQEAG------ARVANSPAEVAEDSDV 94 (327)
T ss_pred cceeeEEe-eccchHHHHHHHHHcCC-----EEEEE----eCcHHH----HHHHHHhc------hhhhCCHHHHHhhcCE
Confidence 46999999 79999999999998774 36663 555444 44555543 2345668999999999
Q ss_pred EEEeCCcCC----------------CCCCch-hhhHHHHHHHHHHHHHHHHhhcCCCeEEEEe
Q 013619 176 ALLIGAKPR----------------GPGMER-AGLLDINGQIFAEQGKALNAVASRNVKVIVV 221 (439)
Q Consensus 176 VIitag~~~----------------kpg~~r-~~ll~~N~~ii~~i~~~i~~~a~p~aivIvv 221 (439)
||...+.|. .+|..- .|.-..--...+++++.+.. .+++++-+
T Consensus 95 vitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~---~~~~~vDA 154 (327)
T KOG0409|consen 95 VITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISN---KGGRFVDA 154 (327)
T ss_pred EEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHh---CCCeEEec
Confidence 999765431 122211 23333334567777777775 35555443
No 278
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.48 E-value=0.65 Score=48.27 Aligned_cols=77 Identities=13% Similarity=0.207 Sum_probs=50.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHH----------H--HhcccCCCCccEEEe
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM----------E--LEDSLFPLLREVKIG 163 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~----------D--L~~~~~~~~~~v~i~ 163 (439)
.++|+||| .|.||-.+|-..+..+. +.| +.|+|+.+.+.+-. | +... ...++.+.+
T Consensus 9 ~~~I~ViG-LGYVGLPlA~~fA~~G~----~Vi-----G~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~--v~~g~lraT 76 (436)
T COG0677 9 SATIGVIG-LGYVGLPLAAAFASAGF----KVI-----GVDINQKKVDKLNRGESYIEEPDLDEVVKEA--VESGKLRAT 76 (436)
T ss_pred ceEEEEEc-cccccHHHHHHHHHcCC----ceE-----eEeCCHHHHHHHhCCcceeecCcHHHHHHHH--HhcCCceEe
Confidence 37999999 79999999999998763 112 34677666553210 0 1001 011345665
Q ss_pred cCcccccCCCcEEEEeCCcCCC
Q 013619 164 INPYELFEDAEWALLIGAKPRG 185 (439)
Q Consensus 164 ~~~~eal~dADiVIitag~~~k 185 (439)
+ +.+.++.||++||+.-.|.+
T Consensus 77 t-d~~~l~~~dv~iI~VPTPl~ 97 (436)
T COG0677 77 T-DPEELKECDVFIICVPTPLK 97 (436)
T ss_pred c-ChhhcccCCEEEEEecCCcC
Confidence 5 66778899999999766643
No 279
>PRK06949 short chain dehydrogenase; Provisional
Probab=93.47 E-value=0.8 Score=43.64 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=33.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHh
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~ 150 (439)
.++|.|+||+|.||.+++..|+..+. .+.+ .+++.++++....++.
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~G~-----~Vi~----~~r~~~~~~~~~~~l~ 54 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQAGA-----KVVL----ASRRVERLKELRAEIE 54 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 36899999999999999999998653 2444 3566677666555553
No 280
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=93.47 E-value=0.17 Score=51.62 Aligned_cols=72 Identities=28% Similarity=0.325 Sum_probs=41.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (439)
++||+|+||+|.+|..++..|...+.- .+.|..+-.+.+. +...++. . ..+.+..-+..+++++|+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp----~~~l~~l~s~~~~----g~~l~~~----g--~~i~v~d~~~~~~~~vDv 66 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFP----VDKLRLLASARSA----GKELSFK----G--KELKVEDLTTFDFSGVDI 66 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCC----cceEEEEEccccC----CCeeeeC----C--ceeEEeeCCHHHHcCCCE
Confidence 579999999999999999988874321 1222222122221 1111111 0 233333223356789999
Q ss_pred EEEeCC
Q 013619 176 ALLIGA 181 (439)
Q Consensus 176 VIitag 181 (439)
||++.|
T Consensus 67 Vf~A~g 72 (334)
T PRK14874 67 ALFSAG 72 (334)
T ss_pred EEECCC
Confidence 999865
No 281
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=93.46 E-value=0.1 Score=51.88 Aligned_cols=75 Identities=24% Similarity=0.195 Sum_probs=46.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (439)
.+||+|+||+|+|||||+-.|+..+ . +.|++.-+ + .+....+++.......++....-....++.+|-
T Consensus 27 ~lrI~itGgaGFIgSHLvdkLm~eg--h--~VIa~Dn~----f----tg~k~n~~~~~~~~~fel~~hdv~~pl~~evD~ 94 (350)
T KOG1429|consen 27 NLRILITGGAGFIGSHLVDKLMTEG--H--EVIALDNY----F----TGRKENLEHWIGHPNFELIRHDVVEPLLKEVDQ 94 (350)
T ss_pred CcEEEEecCcchHHHHHHHHHHhcC--C--eEEEEecc----c----ccchhhcchhccCcceeEEEeechhHHHHHhhh
Confidence 4799999999999999999999876 2 34555222 1 112223334321111233333334568889999
Q ss_pred EEEeCCc
Q 013619 176 ALLIGAK 182 (439)
Q Consensus 176 VIitag~ 182 (439)
|+..|..
T Consensus 95 IyhLAap 101 (350)
T KOG1429|consen 95 IYHLAAP 101 (350)
T ss_pred hhhhccC
Confidence 9987654
No 282
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=93.46 E-value=0.36 Score=46.27 Aligned_cols=116 Identities=14% Similarity=0.083 Sum_probs=62.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEec--C-------cc
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--N-------PY 167 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~--~-------~~ 167 (439)
.+|.|+||+|.+|.+++..|+..+. .+.+ .+++.+.++....++.... .+ ....++. + -.
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~-~~-~~~D~~~~~~~~~~~~~~~ 75 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGA-----RVVI----ADIKPARARLAALEIGPAA-IA-VSLDVTRQDSIDRIVAAAV 75 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC-----EEEE----EcCCHHHHHHHHHHhCCce-EE-EEccCCCHHHHHHHHHHHH
Confidence 4799999999999999999998763 2555 3666666665555543211 00 0111110 0 11
Q ss_pred cccCCCcEEEEeCCcCC-CCC--C---chhhhHHHHHHHHHHHH----HHHHhhcCCCeEEEEeCCc
Q 013619 168 ELFEDAEWALLIGAKPR-GPG--M---ERAGLLDINGQIFAEQG----KALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 168 eal~dADiVIitag~~~-kpg--~---~r~~ll~~N~~ii~~i~----~~i~~~a~p~aivIvvtNP 224 (439)
+.+...|++|..+|... .+- . +-...+..|..-...+. +.+.+. ..++.|++++..
T Consensus 76 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~~iv~~sS~ 141 (257)
T PRK07067 76 ERFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQ-GRGGKIINMASQ 141 (257)
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhc-CCCcEEEEeCCH
Confidence 12346899999887542 111 1 11223445544333333 333332 234667777654
No 283
>PRK09291 short chain dehydrogenase; Provisional
Probab=93.46 E-value=1.2 Score=42.30 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcC
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGE 120 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~ 120 (439)
++|.|+||+|.||.+++..|+..+
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G 26 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKG 26 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC
Confidence 479999999999999999999876
No 284
>PLN02253 xanthoxin dehydrogenase
Probab=93.46 E-value=1.3 Score=43.06 Aligned_cols=115 Identities=10% Similarity=0.067 Sum_probs=61.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCC-CccEEEecCcccc-----
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYEL----- 169 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~-~~~v~i~~~~~ea----- 169 (439)
.+++.|+||+|.||.+++..|+..+. .+.+ .+++.+.++....++.... .. .....++ +.+.
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~G~-----~v~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~--d~~~~~~~~ 85 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKHGA-----KVCI----VDLQDDLGQNVCDSLGGEP-NVCFFHCDVT--VEDDVSRAV 85 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHhcCCC-ceEEEEeecC--CHHHHHHHH
Confidence 35799999999999999999998763 2544 3455455554444442110 00 0011111 2211
Q ss_pred ------cCCCcEEEEeCCcCCCC-C----Cc---hhhhHHHHH----HHHHHHHHHHHhhcCCCeEEEEeCCc
Q 013619 170 ------FEDAEWALLIGAKPRGP-G----ME---RAGLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 170 ------l~dADiVIitag~~~kp-g----~~---r~~ll~~N~----~ii~~i~~~i~~~a~p~aivIvvtNP 224 (439)
+...|++|..+|....+ . .+ -...+..|. .+++...+.+.+. ..+.+++++..
T Consensus 86 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~ii~isS~ 156 (280)
T PLN02253 86 DFTVDKFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPL--KKGSIVSLCSV 156 (280)
T ss_pred HHHHHHhCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc--CCceEEEecCh
Confidence 23589999998864321 1 11 122344552 3344455555442 34666666553
No 285
>PRK08703 short chain dehydrogenase; Provisional
Probab=93.45 E-value=1.1 Score=42.37 Aligned_cols=45 Identities=24% Similarity=0.254 Sum_probs=34.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHh
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~ 150 (439)
++|.|+||+|.+|.+++..|+..+. .+.+ .+++.++++....++.
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~-----~V~~----~~r~~~~~~~~~~~l~ 51 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGA-----TVIL----VARHQKKLEKVYDAIV 51 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCC-----EEEE----EeCChHHHHHHHHHHH
Confidence 5899999999999999999998653 2444 4677777776665553
No 286
>PRK07201 short chain dehydrogenase; Provisional
Probab=93.41 E-value=0.82 Score=50.26 Aligned_cols=103 Identities=16% Similarity=0.117 Sum_probs=56.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEec------------
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI------------ 164 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~------------ 164 (439)
|||.|+||+|.||++++..|+.... + ..|.. ++.+...+.+......+.+ .+++...
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~-g--~~V~~--l~R~~~~~~~~~~~~~~~~------~~v~~~~~Dl~~~~~~~~~ 69 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRR-E--ATVHV--LVRRQSLSRLEALAAYWGA------DRVVPLVGDLTEPGLGLSE 69 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCC-C--CEEEE--EECcchHHHHHHHHHhcCC------CcEEEEecccCCccCCcCH
Confidence 5899999999999999999984221 1 12433 2112112222222111100 1111111
Q ss_pred CcccccCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhh
Q 013619 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (439)
Q Consensus 165 ~~~eal~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~ 211 (439)
...+.++++|+||.+++... ......+....|+.-...+.+.+.+.
T Consensus 70 ~~~~~l~~~D~Vih~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~ 115 (657)
T PRK07201 70 ADIAELGDIDHVVHLAAIYD-LTADEEAQRAANVDGTRNVVELAERL 115 (657)
T ss_pred HHHHHhcCCCEEEECceeec-CCCCHHHHHHHHhHHHHHHHHHHHhc
Confidence 11233488999999987532 22233445667777777777777764
No 287
>PRK09242 tropinone reductase; Provisional
Probab=93.40 E-value=1.3 Score=42.35 Aligned_cols=115 Identities=14% Similarity=0.141 Sum_probs=64.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEE-ecC--c------
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------ 166 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i-~~~--~------ 166 (439)
.+++.|+||+|.||..++..|+..+. .|.+ .+++.+.++....++.+.. +. .++.. ..| +
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G~-----~v~~----~~r~~~~~~~~~~~l~~~~-~~-~~~~~~~~Dl~~~~~~~~ 77 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLGA-----DVLI----VARDADALAQARDELAEEF-PE-REVHGLAADVSDDEDRRA 77 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHhhC-CC-CeEEEEECCCCCHHHHHH
Confidence 45899999999999999999998763 2544 3566677776666665331 11 11111 111 1
Q ss_pred -----ccccCCCcEEEEeCCcCC-CC--CCch---hhhHHHHHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 167 -----YELFEDAEWALLIGAKPR-GP--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 167 -----~eal~dADiVIitag~~~-kp--g~~r---~~ll~~N~~----ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
.+.+...|+||..+|... .+ ..+. ...+..|.. +++...+.+.+. +.+.||+++.
T Consensus 78 ~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~ii~~sS 147 (257)
T PRK09242 78 ILDWVEDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQH--ASSAIVNIGS 147 (257)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc--CCceEEEECc
Confidence 123456799999988532 11 1111 123444433 444444555553 4456666654
No 288
>PRK06482 short chain dehydrogenase; Provisional
Probab=93.40 E-value=0.29 Score=47.55 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=21.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcC
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGE 120 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~ 120 (439)
++|.|+||+|.||.+++..|+..+
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g 26 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARG 26 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCC
Confidence 479999999999999999999876
No 289
>PRK05884 short chain dehydrogenase; Provisional
Probab=93.39 E-value=0.3 Score=46.22 Aligned_cols=44 Identities=20% Similarity=0.214 Sum_probs=32.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHH
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL 149 (439)
||+.|+||+|.+|.+++..|+..+. .+.+ .+++.++++..+.++
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~-----~v~~----~~r~~~~~~~~~~~~ 44 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGH-----KVTL----VGARRDDLEVAAKEL 44 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHhc
Confidence 5899999999999999999997653 2554 356666666554443
No 290
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=93.39 E-value=0.58 Score=46.47 Aligned_cols=94 Identities=13% Similarity=0.151 Sum_probs=53.1
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccC-CCcEEE
Q 013619 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-DAEWAL 177 (439)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~-dADiVI 177 (439)
|.|.||+|.||.+|...|...+- ++.+ +-++..+.+.. + +. .+..-....+... ++|+||
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh-----~v~i----ltR~~~~~~~~---~-~~------~v~~~~~~~~~~~~~~DavI 61 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGH-----QVTI----LTRRPPKASQN---L-HP------NVTLWEGLADALTLGIDAVI 61 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCC-----eEEE----EEcCCcchhhh---c-Cc------cccccchhhhcccCCCCEEE
Confidence 67999999999999999987652 2433 23444443321 1 11 1111111112222 799999
Q ss_pred EeCCcCC--CCCC-ch-hhhHHHHHHHHHHHHHHHHhh
Q 013619 178 LIGAKPR--GPGM-ER-AGLLDINGQIFAEQGKALNAV 211 (439)
Q Consensus 178 itag~~~--kpg~-~r-~~ll~~N~~ii~~i~~~i~~~ 211 (439)
..||.|. +.+- .+ ..+.+.-+..-+.+++.|.+.
T Consensus 62 NLAG~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~ 99 (297)
T COG1090 62 NLAGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAAS 99 (297)
T ss_pred ECCCCccccccCCHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 9999874 3232 22 233444455666666667654
No 291
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=93.36 E-value=0.71 Score=51.24 Aligned_cols=91 Identities=8% Similarity=0.011 Sum_probs=57.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCC
Q 013619 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (439)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~d 172 (439)
.++.|||.|+||+|++|++++..|...+. ++.+.. .|.. + ...+..++.+ .+
T Consensus 377 ~~~~mkiLVtGa~G~iG~~l~~~L~~~g~-----~v~~~~--~~l~-d-~~~v~~~i~~-------------------~~ 428 (668)
T PLN02260 377 GKPSLKFLIYGRTGWIGGLLGKLCEKQGI-----AYEYGK--GRLE-D-RSSLLADIRN-------------------VK 428 (668)
T ss_pred CCCCceEEEECCCchHHHHHHHHHHhCCC-----eEEeec--cccc-c-HHHHHHHHHh-------------------hC
Confidence 44568999999999999999999887552 132211 1110 0 1111111110 15
Q ss_pred CcEEEEeCCcCCCCC-----CchhhhHHHHHHHHHHHHHHHHhh
Q 013619 173 AEWALLIGAKPRGPG-----MERAGLLDINGQIFAEQGKALNAV 211 (439)
Q Consensus 173 ADiVIitag~~~kpg-----~~r~~ll~~N~~ii~~i~~~i~~~ 211 (439)
.|+||.+|+....+. .+..+.+..|+.-...+++.+.+.
T Consensus 429 pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~ 472 (668)
T PLN02260 429 PTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCREN 472 (668)
T ss_pred CCEEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHc
Confidence 799999987643221 134566788988889999988885
No 292
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=93.36 E-value=0.14 Score=53.32 Aligned_cols=27 Identities=26% Similarity=0.169 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
.++||+|+||+|.+|..+...|...+.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~ 63 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPD 63 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCC
Confidence 456999999999999999998887753
No 293
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=93.35 E-value=1.6 Score=43.96 Aligned_cols=24 Identities=25% Similarity=0.529 Sum_probs=20.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAG 119 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~ 119 (439)
+++||+||| +|+||..++..+...
T Consensus 3 ~klrVAIIG-tG~IGt~hm~~l~~~ 26 (302)
T PRK08300 3 SKLKVAIIG-SGNIGTDLMIKILRS 26 (302)
T ss_pred CCCeEEEEc-CcHHHHHHHHHHhcC
Confidence 458999999 699999988888763
No 294
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.35 E-value=1.3 Score=41.91 Aligned_cols=46 Identities=30% Similarity=0.326 Sum_probs=32.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHh
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~ 150 (439)
+++.|+||+|.+|.+++..|+..+. .+.+. ..++.++++....++.
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~-----~v~~~---~~r~~~~~~~~~~~~~ 50 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGY-----DIAVN---YARSRKAAEETAEEIE 50 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE---cCCCHHHHHHHHHHHH
Confidence 5899999999999999999998763 23321 2455555655555554
No 295
>PRK07677 short chain dehydrogenase; Provisional
Probab=93.35 E-value=1.4 Score=42.10 Aligned_cols=113 Identities=15% Similarity=0.149 Sum_probs=62.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEE-ec--Cccc-----
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NPYE----- 168 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i-~~--~~~e----- 168 (439)
+++.|+||+|.+|.+++..|+..+. .|.+ .+++.+.++....++.... .++.. .. .+.+
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~-----~Vi~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~ 68 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA-----NVVI----TGRTKEKLEEAKLEIEQFP----GQVLTVQMDVRNPEDVQKM 68 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CcEEEEEecCCCHHHHHHH
Confidence 4789999999999999999998663 2544 3566666666655554221 11111 11 1111
Q ss_pred ------ccCCCcEEEEeCCcCC-CC--CCch---hhhHHHHHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 169 ------LFEDAEWALLIGAKPR-GP--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 169 ------al~dADiVIitag~~~-kp--g~~r---~~ll~~N~~----ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
.+...|+||..+|... .+ ..+. ...++.|.. +.+.+.+.+.+. ...+.+++++.
T Consensus 69 ~~~~~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~g~ii~isS 138 (252)
T PRK07677 69 VEQIDEKFGRIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEK-GIKGNIINMVA 138 (252)
T ss_pred HHHHHHHhCCccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCCEEEEEEcC
Confidence 1246799999877432 12 1222 223444433 334444444432 23577777763
No 296
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=93.27 E-value=0.18 Score=52.86 Aligned_cols=73 Identities=25% Similarity=0.278 Sum_probs=55.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (439)
+..||.|||| |-+|.-++..|...++. .|.+ .+++.++++.+|.++. + .+.--.+..+.+.++|
T Consensus 177 ~~~~vlvIGA-Gem~~lva~~L~~~g~~----~i~I----aNRT~erA~~La~~~~-~------~~~~l~el~~~l~~~D 240 (414)
T COG0373 177 KDKKVLVIGA-GEMGELVAKHLAEKGVK----KITI----ANRTLERAEELAKKLG-A------EAVALEELLEALAEAD 240 (414)
T ss_pred ccCeEEEEcc-cHHHHHHHHHHHhCCCC----EEEE----EcCCHHHHHHHHHHhC-C------eeecHHHHHHhhhhCC
Confidence 3468999996 99999999999998874 2655 5888888888887775 1 1222345678999999
Q ss_pred EEEEeCCcC
Q 013619 175 WALLIGAKP 183 (439)
Q Consensus 175 iVIitag~~ 183 (439)
+||.+-|.|
T Consensus 241 vVissTsa~ 249 (414)
T COG0373 241 VVISSTSAP 249 (414)
T ss_pred EEEEecCCC
Confidence 999976655
No 297
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=93.27 E-value=0.27 Score=50.03 Aligned_cols=72 Identities=25% Similarity=0.320 Sum_probs=43.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC-CCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEec--CcccccCC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEV-LGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYELFED 172 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l-~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~--~~~eal~d 172 (439)
++||+|+||+|.||..+...|..... +. .+.++-+.++..+ ...++... ...+-. -+..++++
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~-----~~~~~AS~rSaG~---~~~~f~~~------~~~v~~~~~~~~~~~~ 66 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFE-----ELVLLASARSAGK---KYIEFGGK------SIGVPEDAADEFVFSD 66 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcc-----eEEEEecccccCC---ccccccCc------cccCcccccccccccc
Confidence 47999999999999999999988532 21 2333334443221 11222211 112222 35677889
Q ss_pred CcEEEEeCC
Q 013619 173 AEWALLIGA 181 (439)
Q Consensus 173 ADiVIitag 181 (439)
+|+|++++|
T Consensus 67 ~Divf~~ag 75 (334)
T COG0136 67 VDIVFFAAG 75 (334)
T ss_pred CCEEEEeCc
Confidence 999999876
No 298
>PRK05993 short chain dehydrogenase; Provisional
Probab=93.23 E-value=0.24 Score=48.31 Aligned_cols=109 Identities=9% Similarity=0.028 Sum_probs=59.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCccc----cc--
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE----LF-- 170 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~e----al-- 170 (439)
++|.|+||+|.+|.+++..|+..+. .+.+ .+++.+.++... +....+ ....++ +.+ .+
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~-----~Vi~----~~r~~~~~~~l~----~~~~~~-~~~Dl~--d~~~~~~~~~~ 68 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGW-----RVFA----TCRKEEDVAALE----AEGLEA-FQLDYA--EPESIAALVAQ 68 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHH----HCCceE-EEccCC--CHHHHHHHHHH
Confidence 4799999999999999999988653 2444 356655554322 110000 001111 111 11
Q ss_pred ------CCCcEEEEeCCcCCCCC---Cc---hhhhHHHHHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 171 ------EDAEWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 171 ------~dADiVIitag~~~kpg---~~---r~~ll~~N~~----ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
...|++|..+|...... .+ -...++.|.. ..+.+.+.+.+. ..+.||+++.
T Consensus 69 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~--~~g~iv~isS 135 (277)
T PRK05993 69 VLELSGGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQ--GQGRIVQCSS 135 (277)
T ss_pred HHHHcCCCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhc--CCCEEEEECC
Confidence 24699999887643211 11 1234555533 255666666663 3456777765
No 299
>PRK06128 oxidoreductase; Provisional
Probab=93.22 E-value=1.9 Score=42.67 Aligned_cols=117 Identities=15% Similarity=0.045 Sum_probs=61.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEE-EecC--c-------
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P------- 166 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~-i~~~--~------- 166 (439)
++|.|+||+|.||.+++..|+..+. .+.+.. .+.....++.....+.... .++. +..| +
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~-----~V~i~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~v~~~ 124 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGA-----DIALNY--LPEEEQDAAEVVQLIQAEG----RKAVALPGDLKDEAFCRQL 124 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCC-----EEEEEe--CCcchHHHHHHHHHHHHcC----CeEEEEecCCCCHHHHHHH
Confidence 5899999999999999999998763 244422 1222223333333343211 1111 1111 1
Q ss_pred ----ccccCCCcEEEEeCCcCC--CCC--Cc---hhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 013619 167 ----YELFEDAEWALLIGAKPR--GPG--ME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 167 ----~eal~dADiVIitag~~~--kpg--~~---r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNP 224 (439)
.+.+...|++|..+|... .+. .+ -...++.|+.-...+.+.+..+-..++.||+++.-
T Consensus 125 ~~~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~ 193 (300)
T PRK06128 125 VERAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSI 193 (300)
T ss_pred HHHHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCc
Confidence 122346899999988632 221 11 23345666554444444444332234567776653
No 300
>PRK05855 short chain dehydrogenase; Validated
Probab=93.18 E-value=0.89 Score=48.66 Aligned_cols=115 Identities=13% Similarity=0.068 Sum_probs=67.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEE-ec--Cccc----
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NPYE---- 168 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i-~~--~~~e---- 168 (439)
.+++.|+||+|.||.+++..|+..+. .+.+ .+++.++++..+.++.... .++.. .. .+.+
T Consensus 315 ~~~~lv~G~s~giG~~~a~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~~~~ 381 (582)
T PRK05855 315 GKLVVVTGAGSGIGRETALAFAREGA-----EVVA----SDIDEAAAERTAELIRAAG----AVAHAYRVDVSDADAMEA 381 (582)
T ss_pred CCEEEEECCcCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CeEEEEEcCCCCHHHHHH
Confidence 36899999999999999999998763 2544 4677777776666664321 01111 11 1111
Q ss_pred -------ccCCCcEEEEeCCcCCCCC---Cch---hhhHHHHH----HHHHHHHHHHHhhcCCCeEEEEeCCc
Q 013619 169 -------LFEDAEWALLIGAKPRGPG---MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 169 -------al~dADiVIitag~~~kpg---~~r---~~ll~~N~----~ii~~i~~~i~~~a~p~aivIvvtNP 224 (439)
.+...|++|..+|...... .+. ...+..|. .+.+...+.+.+. +..+.||+++.-
T Consensus 382 ~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~~g~iv~~sS~ 453 (582)
T PRK05855 382 FAEWVRAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVER-GTGGHIVNVASA 453 (582)
T ss_pred HHHHHHHhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCcEEEEECCh
Confidence 1235799999998743211 111 22344552 3444555566654 345777777654
No 301
>PRK08219 short chain dehydrogenase; Provisional
Probab=93.17 E-value=0.53 Score=43.78 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhc
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAG 119 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~ 119 (439)
+++|.|+||+|.+|..++..|+..
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~ 26 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT 26 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh
Confidence 468999999999999999999876
No 302
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=93.17 E-value=0.28 Score=49.44 Aligned_cols=24 Identities=17% Similarity=0.030 Sum_probs=22.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcC
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGE 120 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~ 120 (439)
+||.|+||+|+||++++..|+..+
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G 24 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKG 24 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCC
Confidence 489999999999999999999875
No 303
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=93.13 E-value=0.17 Score=50.14 Aligned_cols=72 Identities=17% Similarity=0.193 Sum_probs=44.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (439)
+++||+|||. |.+|..++..|... ..+ -++.- + .|++.++.+..+..+.. .....+..+.+.++|
T Consensus 5 ~~irIGIIG~-G~IG~~~a~~L~~~-~~~--~el~a-V--~dr~~~~a~~~a~~~g~--------~~~~~~~eell~~~D 69 (271)
T PRK13302 5 PELRVAIAGL-GAIGKAIAQALDRG-LPG--LTLSA-V--AVRDPQRHADFIWGLRR--------PPPVVPLDQLATHAD 69 (271)
T ss_pred CeeEEEEECc-cHHHHHHHHHHHhc-CCC--eEEEE-E--ECCCHHHHHHHHHhcCC--------CcccCCHHHHhcCCC
Confidence 3589999995 99999999988764 111 12321 1 46666665544433210 112234556678899
Q ss_pred EEEEeCC
Q 013619 175 WALLIGA 181 (439)
Q Consensus 175 iVIitag 181 (439)
+|++++.
T Consensus 70 ~Vvi~tp 76 (271)
T PRK13302 70 IVVEAAP 76 (271)
T ss_pred EEEECCC
Confidence 9999854
No 304
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=93.08 E-value=1.5 Score=42.98 Aligned_cols=67 Identities=27% Similarity=0.356 Sum_probs=39.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (439)
+|||+|+|++|.+|..++..+...+-+ +++-. +|.+.++.... . .+ .+....+..+.++++|+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~----elvav---~d~~~~~~~~~----~----~~--~i~~~~dl~~ll~~~Dv 63 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDL----ELVAA---VDRPGSPLVGQ----G----AL--GVAITDDLEAVLADADV 63 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCC----EEEEE---EecCCcccccc----C----CC--CccccCCHHHhccCCCE
Confidence 589999996699999999877654322 23221 35444433221 1 11 22334444555678999
Q ss_pred EEEe
Q 013619 176 ALLI 179 (439)
Q Consensus 176 VIit 179 (439)
||.+
T Consensus 64 Vid~ 67 (257)
T PRK00048 64 LIDF 67 (257)
T ss_pred EEEC
Confidence 8865
No 305
>PLN02686 cinnamoyl-CoA reductase
Probab=93.05 E-value=0.3 Score=50.13 Aligned_cols=119 Identities=11% Similarity=0.078 Sum_probs=62.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhccc-CC-CCccEE-----Ee--c
Q 013619 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-FP-LLREVK-----IG--I 164 (439)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~-~~-~~~~v~-----i~--~ 164 (439)
.++++|.|+||+|+||++++..|+..+. .+.+. .++.+.++.. .++.... .. ....+. ++ .
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~-----~V~~~----~r~~~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~ 120 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHGY-----SVRIA----VDTQEDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPE 120 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHH-HHHhhhccccccCCceEEEEcCCCCHH
Confidence 3456999999999999999999998763 24331 1222333222 2221100 00 000111 11 1
Q ss_pred CcccccCCCcEEEEeCCcCCCCCC--chhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 165 NPYELFEDAEWALLIGAKPRGPGM--ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 165 ~~~eal~dADiVIitag~~~kpg~--~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
...++++++|.|+.+++.....+. ........|..-...+.+.+.+.++-. .+|.++-
T Consensus 121 ~l~~~i~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~-r~V~~SS 180 (367)
T PLN02686 121 SLHEAFDGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVR-KCVFTSS 180 (367)
T ss_pred HHHHHHHhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCcc-EEEEecc
Confidence 123567889999988765322221 112344567777777777766631122 4454444
No 306
>PRK06101 short chain dehydrogenase; Provisional
Probab=93.05 E-value=0.31 Score=46.37 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=30.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHH
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV 145 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~ 145 (439)
.+|.|+||+|.+|.+++..|+..+. .+.+ .+++.++++..
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~-----~V~~----~~r~~~~~~~~ 41 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGW-----QVIA----CGRNQSVLDEL 41 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCC-----EEEE----EECCHHHHHHH
Confidence 5799999999999999999997653 2544 36666666544
No 307
>PRK07035 short chain dehydrogenase; Provisional
Probab=93.04 E-value=1.6 Score=41.45 Aligned_cols=46 Identities=24% Similarity=0.212 Sum_probs=34.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhc
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~ 151 (439)
.+|.|+||+|.||.+++..|+..+. .+.+ .+++.+.++....++.+
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~-----~Vi~----~~r~~~~~~~~~~~~~~ 54 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGA-----HVIV----SSRKLDGCQAVADAIVA 54 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHh
Confidence 5799999999999999999998763 2544 35666666666666643
No 308
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=93.00 E-value=2.1 Score=40.14 Aligned_cols=26 Identities=27% Similarity=0.178 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcC
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGE 120 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~ 120 (439)
+.++|.|+||+|.+|.+++..|+..+
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~G 29 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQG 29 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC
Confidence 44699999999999999999999875
No 309
>PRK06940 short chain dehydrogenase; Provisional
Probab=93.00 E-value=0.94 Score=44.28 Aligned_cols=86 Identities=17% Similarity=0.245 Sum_probs=44.5
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCC-CccEEEecCccc---------
Q 013619 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYE--------- 168 (439)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~-~~~v~i~~~~~e--------- 168 (439)
+.|.| +|.||.+++..|. .+. .|.+ .+++.++++....++.+..... .....++ +++
T Consensus 5 ~lItG-a~gIG~~la~~l~-~G~-----~Vv~----~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~--d~~~i~~~~~~~ 71 (275)
T PRK06940 5 VVVIG-AGGIGQAIARRVG-AGK-----KVLL----ADYNEENLEAAAKTLREAGFDVSTQEVDVS--SRESVKALAATA 71 (275)
T ss_pred EEEEC-CChHHHHHHHHHh-CCC-----EEEE----EeCCHHHHHHHHHHHHhcCCeEEEEEeecC--CHHHHHHHHHHH
Confidence 45556 5999999999985 331 2555 3566666665555554211000 0011111 111
Q ss_pred -ccCCCcEEEEeCCcCCCCCCchhhhHHHHH
Q 013619 169 -LFEDAEWALLIGAKPRGPGMERAGLLDING 198 (439)
Q Consensus 169 -al~dADiVIitag~~~kpg~~r~~ll~~N~ 198 (439)
.+...|++|..+|... ...+-...+..|.
T Consensus 72 ~~~g~id~li~nAG~~~-~~~~~~~~~~vN~ 101 (275)
T PRK06940 72 QTLGPVTGLVHTAGVSP-SQASPEAILKVDL 101 (275)
T ss_pred HhcCCCCEEEECCCcCC-chhhHHHHHHHhh
Confidence 1346899999998642 1122233455553
No 310
>PRK12747 short chain dehydrogenase; Provisional
Probab=92.96 E-value=1.9 Score=41.08 Aligned_cols=47 Identities=19% Similarity=0.178 Sum_probs=32.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHh
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~ 150 (439)
.+++.|+||+|.||.+++..|+..+. .+.+. ...+.+.++..+.++.
T Consensus 4 ~k~~lItGas~gIG~~ia~~l~~~G~-----~v~~~---~~~~~~~~~~~~~~~~ 50 (252)
T PRK12747 4 GKVALVTGASRGIGRAIAKRLANDGA-----LVAIH---YGNRKEEAEETVYEIQ 50 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----eEEEE---cCCCHHHHHHHHHHHH
Confidence 35899999999999999999998763 24442 1234455555555554
No 311
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=92.90 E-value=0.079 Score=52.67 Aligned_cols=131 Identities=15% Similarity=0.122 Sum_probs=77.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc----CCCCCC--CceEEEecccc--cchhh--HHHHHHHHhcccCCCCccEEEecCc
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAG----EVLGPD--QPIALKLLGSE--RSLQA--LEGVAMELEDSLFPLLREVKIGINP 166 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~----~l~~~~--~~I~L~l~~~d--~~~e~--l~g~a~DL~~~~~~~~~~v~i~~~~ 166 (439)
.||.|.|| |..|..++..|... ++-.++ ..|.+ +|.+ +..++ +...-..+.+.. .. ....+.
T Consensus 26 ~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~--vD~~Gll~~~r~~l~~~~~~~a~~~----~~-~~~~~L 97 (279)
T cd05312 26 QRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWL--VDSKGLLTKDRKDLTPFKKPFARKD----EE-KEGKSL 97 (279)
T ss_pred cEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEE--EcCCCeEeCCCCcchHHHHHHHhhc----Cc-ccCCCH
Confidence 59999996 99999999988765 542111 23444 3322 11111 222222232221 00 123568
Q ss_pred ccccC--CCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCch---hHHHHHHHHHCCCCCC
Q 013619 167 YELFE--DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC---NTNALICLKNAPSIPA 241 (439)
Q Consensus 167 ~eal~--dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPv---d~~t~i~~k~s~~~p~ 241 (439)
.++++ ++|++|=+.+.+ |- +=+++.+.|.++ +.+.+|+-.+||. .+...-+++.+.+ +
T Consensus 98 ~e~i~~v~ptvlIG~S~~~---g~-----------ft~evv~~Ma~~-~~~PIIFaLSNPt~~~E~~pe~a~~~t~G--~ 160 (279)
T cd05312 98 LEVVKAVKPTVLIGLSGVG---GA-----------FTEEVVRAMAKS-NERPIIFALSNPTSKAECTAEDAYKWTDG--R 160 (279)
T ss_pred HHHHHhcCCCEEEEeCCCC---CC-----------CCHHHHHHHHhc-CCCCEEEECCCcCCccccCHHHHHHhhcC--C
Confidence 89999 899988654432 21 123556667776 6889999999997 4555666666533 2
Q ss_pred CceeccccchH
Q 013619 242 KNFHALTRLDE 252 (439)
Q Consensus 242 kvig~gt~LDs 252 (439)
.+|++|+-.+.
T Consensus 161 ai~ATGsPf~p 171 (279)
T cd05312 161 ALFASGSPFPP 171 (279)
T ss_pred EEEEeCCCCCC
Confidence 47888876554
No 312
>PRK07063 short chain dehydrogenase; Provisional
Probab=92.88 E-value=1.5 Score=42.03 Aligned_cols=116 Identities=11% Similarity=-0.002 Sum_probs=65.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEE-ec--Cccc----
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NPYE---- 168 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i-~~--~~~e---- 168 (439)
.++|.|+||+|.||.+++..|+..+. .+.+ .+++.+.++..+.++.... ...++.. .. .+.+
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~-----~vv~----~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~ 75 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGA-----AVAL----ADLDAALAERAAAAIARDV--AGARVLAVPADVTDAASVAA 75 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcc--CCceEEEEEccCCCHHHHHH
Confidence 35799999999999999999998763 2544 3667777777766665310 0111111 11 1111
Q ss_pred -------ccCCCcEEEEeCCcCC-CC-C-Cch---hhhHHHHHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 013619 169 -------LFEDAEWALLIGAKPR-GP-G-MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 169 -------al~dADiVIitag~~~-kp-g-~~r---~~ll~~N~~----ii~~i~~~i~~~a~p~aivIvvtNP 224 (439)
.+...|++|..+|... .+ . .+. ...+..|.. +.+...+.+.+. ..+.||+++.-
T Consensus 76 ~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~g~iv~isS~ 146 (260)
T PRK07063 76 AVAAAEEAFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVER--GRGSIVNIAST 146 (260)
T ss_pred HHHHHHHHhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhh--CCeEEEEECCh
Confidence 1246899999988532 11 1 111 122334433 334444555543 34677777654
No 313
>PRK08324 short chain dehydrogenase; Validated
Probab=92.88 E-value=1.2 Score=49.68 Aligned_cols=115 Identities=18% Similarity=0.135 Sum_probs=62.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCccc----c---
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE----L--- 169 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~e----a--- 169 (439)
.+|.|+||+|.||.+++..|+..+. .|.+ .+++.+.++..+.++.... ....+..-..+.+ .
T Consensus 423 k~vLVTGasggIG~~la~~L~~~Ga-----~Vvl----~~r~~~~~~~~~~~l~~~~--~v~~v~~Dvtd~~~v~~~~~~ 491 (681)
T PRK08324 423 KVALVTGAAGGIGKATAKRLAAEGA-----CVVL----ADLDEEAAEAAAAELGGPD--RALGVACDVTDEAAVQAAFEE 491 (681)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCcC-----EEEE----EeCCHHHHHHHHHHHhccC--cEEEEEecCCCHHHHHHHHHH
Confidence 5899999999999999999998763 2555 4666666665555554310 0000111011111 1
Q ss_pred ----cCCCcEEEEeCCcCCCCC---Cch---hhhHHHH----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 170 ----FEDAEWALLIGAKPRGPG---MER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 170 ----l~dADiVIitag~~~kpg---~~r---~~ll~~N----~~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
+.+.|+||.++|...... .+. ...+..| ..+++...+.+++. +..+.|++++.
T Consensus 492 ~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~-~~~g~iV~vsS 558 (681)
T PRK08324 492 AALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQ-GLGGSIVFIAS 558 (681)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCcEEEEECC
Confidence 236899999988643211 111 1123333 33444445555553 23466666664
No 314
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=92.83 E-value=0.54 Score=48.02 Aligned_cols=66 Identities=17% Similarity=0.127 Sum_probs=41.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCC
Q 013619 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (439)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (439)
-+.+||+|||. |++|.+++..|...+. .+.+. ++...+....+.+ . .+ .. .+..+++++|
T Consensus 15 L~gktIgIIG~-GsmG~AlA~~L~~sG~-----~Vvv~----~r~~~~s~~~A~~--~---G~----~~-~s~~eaa~~A 74 (330)
T PRK05479 15 IKGKKVAIIGY-GSQGHAHALNLRDSGV-----DVVVG----LREGSKSWKKAEA--D---GF----EV-LTVAEAAKWA 74 (330)
T ss_pred hCCCEEEEEee-HHHHHHHHHHHHHCCC-----EEEEE----ECCchhhHHHHHH--C---CC----ee-CCHHHHHhcC
Confidence 44578999995 9999999999987664 24332 2221222222221 1 11 12 2567889999
Q ss_pred cEEEEe
Q 013619 174 EWALLI 179 (439)
Q Consensus 174 DiVIit 179 (439)
|+|+++
T Consensus 75 DVVvLa 80 (330)
T PRK05479 75 DVIMIL 80 (330)
T ss_pred CEEEEc
Confidence 999997
No 315
>PRK12828 short chain dehydrogenase; Provisional
Probab=92.82 E-value=0.4 Score=44.88 Aligned_cols=46 Identities=22% Similarity=0.164 Sum_probs=32.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHh
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~ 150 (439)
.++|.|+||+|.||.+++..|+..+. .+.+ .+++.++......++.
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~ 52 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGA-----RVAL----IGRGAAPLSQTLPGVP 52 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCC-----eEEE----EeCChHhHHHHHHHHh
Confidence 45899999999999999999998763 2444 3565555544444443
No 316
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=92.78 E-value=0.5 Score=46.52 Aligned_cols=73 Identities=12% Similarity=0.125 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (439)
+..++.|+|+ |.+|.+++..|+..+. .+.+ .+++.++++..+.++.... .+.....+...+.++|
T Consensus 116 ~~k~vliiGa-Gg~g~aia~~L~~~g~-----~v~v----~~R~~~~~~~la~~~~~~~-----~~~~~~~~~~~~~~~D 180 (270)
T TIGR00507 116 PNQRVLIIGA-GGAARAVALPLLKADC-----NVII----ANRTVSKAEELAERFQRYG-----EIQAFSMDELPLHRVD 180 (270)
T ss_pred cCCEEEEEcC-cHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHhhcC-----ceEEechhhhcccCcc
Confidence 3568999996 9999999999987652 2555 4677777777766664311 1222222223456899
Q ss_pred EEEEeCCc
Q 013619 175 WALLIGAK 182 (439)
Q Consensus 175 iVIitag~ 182 (439)
+||.+.+.
T Consensus 181 ivInatp~ 188 (270)
T TIGR00507 181 LIINATSA 188 (270)
T ss_pred EEEECCCC
Confidence 99998654
No 317
>PRK07074 short chain dehydrogenase; Provisional
Probab=92.77 E-value=1.9 Score=41.13 Aligned_cols=44 Identities=27% Similarity=0.230 Sum_probs=31.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHH
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL 149 (439)
.++.|+||+|.||.+++..|+..+. .+.+ .+++.+.++....++
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~-----~v~~----~~r~~~~~~~~~~~~ 46 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGD-----RVLA----LDIDAAALAAFADAL 46 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHh
Confidence 3799999999999999999997652 2444 356666665555555
No 318
>PRK06125 short chain dehydrogenase; Provisional
Probab=92.75 E-value=2.2 Score=40.88 Aligned_cols=117 Identities=14% Similarity=0.037 Sum_probs=64.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCC--CccEEEecC-----ccc
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--LREVKIGIN-----PYE 168 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~--~~~v~i~~~-----~~e 168 (439)
.++|.|+||+|.+|.+++..|+..+. .+.+ .+++.++++....++....... .....++.. ..+
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 77 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAEGC-----HLHL----VARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAA 77 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHH
Confidence 46899999999999999999998663 2544 3566666666555554321000 001111100 011
Q ss_pred ccCCCcEEEEeCCcCC-CCC--Cch---hhhHHHHHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 169 LFEDAEWALLIGAKPR-GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 169 al~dADiVIitag~~~-kpg--~~r---~~ll~~N~~----ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
.+...|++|..+|... .+- .+. ...+..|.. +.+.+.+.+.+. ..+.+++++.
T Consensus 78 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~g~iv~iss 140 (259)
T PRK06125 78 EAGDIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKAR--GSGVIVNVIG 140 (259)
T ss_pred HhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCcEEEEecC
Confidence 3457899999887642 221 111 122344433 344455566553 3456666654
No 319
>PRK05865 hypothetical protein; Provisional
Probab=92.74 E-value=0.47 Score=54.24 Aligned_cols=103 Identities=17% Similarity=0.078 Sum_probs=60.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEe--cCcccccCCCc
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFEDAE 174 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~--~~~~eal~dAD 174 (439)
|||.|+||+|+||++++..|+..+. ++.. ++++.... +.... .+ ....+. ....+.++++|
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~-----~Vv~----l~R~~~~~------~~~~v-~~-v~gDL~D~~~l~~al~~vD 63 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGH-----EVVG----IARHRPDS------WPSSA-DF-IAADIRDATAVESAMTGAD 63 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC-----EEEE----EECCchhh------cccCc-eE-EEeeCCCHHHHHHHHhCCC
Confidence 5899999999999999999987653 2433 23331110 00000 00 001111 11235678899
Q ss_pred EEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 013619 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (439)
Q Consensus 175 iVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPv 225 (439)
+||.+++... + ....|..-...+.+.+.+. + -..||.++.+.
T Consensus 64 ~VVHlAa~~~-~------~~~vNv~GT~nLLeAa~~~-g-vkr~V~iSS~~ 105 (854)
T PRK05865 64 VVAHCAWVRG-R------NDHINIDGTANVLKAMAET-G-TGRIVFTSSGH 105 (854)
T ss_pred EEEECCCccc-c------hHHHHHHHHHHHHHHHHHc-C-CCeEEEECCcH
Confidence 9999987532 1 3456766677777777764 2 23677777765
No 320
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=92.71 E-value=0.53 Score=40.31 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhcC
Q 013619 98 NIAVSGAAGMIANHLLFKLAAGE 120 (439)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~ 120 (439)
||+|+|++|.+|..++..|...+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~ 23 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHP 23 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCC
Confidence 68999987999999988888754
No 321
>PRK09135 pteridine reductase; Provisional
Probab=92.71 E-value=0.73 Score=43.43 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~ 120 (439)
..+|.|+||+|.+|.+++..|+..+
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g 30 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAG 30 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC
Confidence 3589999999999999999999865
No 322
>PRK08263 short chain dehydrogenase; Provisional
Probab=92.70 E-value=0.26 Score=47.91 Aligned_cols=114 Identities=13% Similarity=0.031 Sum_probs=58.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEec---------Ccc
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---------NPY 167 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~---------~~~ 167 (439)
++|.|+||+|.||.+++..|+..+. .+.+ .+++.+.++.....+.... ......++. .-.
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~-----~V~~----~~r~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~ 72 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGD-----RVVA----TARDTATLADLAEKYGDRL--LPLALDVTDRAAVFAAVETAV 72 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHhccCCe--eEEEccCCCHHHHHHHHHHHH
Confidence 4799999999999999999987662 2444 3555555543322211110 000111110 001
Q ss_pred cccCCCcEEEEeCCcCCCCC---Cc---hhhhHHHHHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 168 ELFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 168 eal~dADiVIitag~~~kpg---~~---r~~ll~~N~~----ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
+.+...|.||.++|...... .+ -...+..|.. +++.+.+.+++. ..+.+|+++-
T Consensus 73 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~vsS 136 (275)
T PRK08263 73 EHFGRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQ--RSGHIIQISS 136 (275)
T ss_pred HHcCCCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCEEEEEcC
Confidence 12346799999988643211 11 1223445544 345555556653 3345566553
No 323
>PRK05875 short chain dehydrogenase; Provisional
Probab=92.69 E-value=2.4 Score=40.99 Aligned_cols=46 Identities=22% Similarity=0.240 Sum_probs=33.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHh
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~ 150 (439)
.++|.|+||+|.||.+++..|+..+. .+.+ .+++.+.++....++.
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~ 52 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGA-----AVMI----VGRNPDKLAAAAEEIE 52 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHHH
Confidence 36899999999999999999998763 2554 3555566665555554
No 324
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=92.67 E-value=0.27 Score=46.52 Aligned_cols=69 Identities=13% Similarity=0.052 Sum_probs=40.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEE--ecCcccccCC
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI--GINPYELFED 172 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i--~~~~~eal~d 172 (439)
+..||.|||| |.||...+..|+..+ + .|.+ +++. ..+ ...++.+.. .+.. ..-.++++.+
T Consensus 9 ~~k~vLVIGg-G~va~~ka~~Ll~~g-a----~V~V----Is~~--~~~-~l~~l~~~~-----~i~~~~~~~~~~~l~~ 70 (202)
T PRK06718 9 SNKRVVIVGG-GKVAGRRAITLLKYG-A----HIVV----ISPE--LTE-NLVKLVEEG-----KIRWKQKEFEPSDIVD 70 (202)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCC-C----eEEE----EcCC--CCH-HHHHHHhCC-----CEEEEecCCChhhcCC
Confidence 3469999996 999999999998866 2 2555 2322 111 112222111 1222 2224568999
Q ss_pred CcEEEEeCC
Q 013619 173 AEWALLIGA 181 (439)
Q Consensus 173 ADiVIitag 181 (439)
+|+||.+-+
T Consensus 71 adlViaaT~ 79 (202)
T PRK06718 71 AFLVIAATN 79 (202)
T ss_pred ceEEEEcCC
Confidence 999888643
No 325
>PRK12744 short chain dehydrogenase; Provisional
Probab=92.62 E-value=1.8 Score=41.45 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
.+++.|+||+|.||.+++..|+..+.
T Consensus 8 ~k~vlItGa~~gIG~~~a~~l~~~G~ 33 (257)
T PRK12744 8 GKVVLIAGGAKNLGGLIARDLAAQGA 33 (257)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC
Confidence 35899999999999999999998653
No 326
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=92.60 E-value=1.5 Score=42.51 Aligned_cols=46 Identities=20% Similarity=0.343 Sum_probs=34.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHh
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~ 150 (439)
..++.|+||+|.+|.+++..|+..+. .+.+ .+++.+.++..+.++.
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~ 55 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGA-----KVAI----LDRNQEKAEAVVAEIK 55 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 35799999999999999999998763 2544 3566666666665554
No 327
>PRK08251 short chain dehydrogenase; Provisional
Probab=92.59 E-value=2.7 Score=39.80 Aligned_cols=77 Identities=19% Similarity=0.248 Sum_probs=47.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEe-c--Ccc------
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I--NPY------ 167 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~-~--~~~------ 167 (439)
.++.|+||+|.+|.+++..|+..+. .+.+ .+++.++++....++.... +. .++... . .+.
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~-----~v~~----~~r~~~~~~~~~~~~~~~~-~~-~~~~~~~~D~~~~~~~~~~ 71 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGR-----DLAL----CARRTDRLEELKAELLARY-PG-IKVAVAALDVNDHDQVFEV 71 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHhhC-CC-ceEEEEEcCCCCHHHHHHH
Confidence 4799999999999999999998762 2544 3566666666655554321 10 112111 1 111
Q ss_pred -----cccCCCcEEEEeCCcCC
Q 013619 168 -----ELFEDAEWALLIGAKPR 184 (439)
Q Consensus 168 -----eal~dADiVIitag~~~ 184 (439)
+.+...|+||..+|...
T Consensus 72 ~~~~~~~~~~id~vi~~ag~~~ 93 (248)
T PRK08251 72 FAEFRDELGGLDRVIVNAGIGK 93 (248)
T ss_pred HHHHHHHcCCCCEEEECCCcCC
Confidence 22456899999988643
No 328
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=92.56 E-value=1.1 Score=45.05 Aligned_cols=25 Identities=16% Similarity=0.028 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~ 120 (439)
.+||.|+||+|+||++++..|+..+
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~~G 30 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLSKG 30 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCC
Confidence 4689999999999999999999876
No 329
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=92.54 E-value=1.3 Score=44.53 Aligned_cols=105 Identities=15% Similarity=0.165 Sum_probs=56.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccch--hhHHHHHHHHhcccCCC-CccEEEec--CcccccC
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL--QALEGVAMELEDSLFPL-LREVKIGI--NPYELFE 171 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~--e~l~g~a~DL~~~~~~~-~~~v~i~~--~~~eal~ 171 (439)
|||.|+||+|.||++++..|+..+. ..+.. .+... ...+.. .++.... .. .....++. +..++++
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~----~~v~~----~~~~~~~~~~~~~-~~~~~~~-~~~~~~~Dl~d~~~~~~~~~ 70 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQ----DSVVN----VDKLTYAGNLESL-ADVSDSE-RYVFEHADICDRAELDRIFA 70 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCC----CeEEE----ecCCCccchHHHH-HhcccCC-ceEEEEecCCCHHHHHHHHH
Confidence 6899999999999999999998653 11222 12211 111111 1111000 00 00111111 1123343
Q ss_pred --CCcEEEEeCCcCCC--CCCchhhhHHHHHHHHHHHHHHHHhh
Q 013619 172 --DAEWALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAV 211 (439)
Q Consensus 172 --dADiVIitag~~~k--pg~~r~~ll~~N~~ii~~i~~~i~~~ 211 (439)
++|+||.+|+.... +.....+.+..|+.-...+.+.+.++
T Consensus 71 ~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~ 114 (352)
T PRK10084 71 QHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNY 114 (352)
T ss_pred hcCCCEEEECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHh
Confidence 47999999886421 12223457788888888888777653
No 330
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=92.51 E-value=0.38 Score=49.60 Aligned_cols=112 Identities=13% Similarity=0.161 Sum_probs=62.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCC-ccEEEecCcccccCC
Q 013619 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGINPYELFED 172 (439)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~-~~v~i~~~~~eal~d 172 (439)
.++.++.|+||+|++|.+++..|...+... .++++|.......+...-.++......+. .++.-......++.+
T Consensus 2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~~-----~irv~D~~~~~~~~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~~ 76 (361)
T KOG1430|consen 2 EKKLSVLVTGGSGFLGQHLVQALLENELKL-----EIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLLDANSISNAFQG 76 (361)
T ss_pred CcCCEEEEECCccHHHHHHHHHHHhccccc-----EEEEeccCccccccchhhhcccCCceeEEecchhhhhhhhhhccC
Confidence 356799999999999999999999887532 33444333221222222111100000000 122222346789999
Q ss_pred CcEEEEeC-C-cCCCCCCchhhhHHHHHHHHHHHHHHHHhh
Q 013619 173 AEWALLIG-A-KPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (439)
Q Consensus 173 ADiVIita-g-~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~ 211 (439)
+ .|++.+ + .|+.....|......|++=-+.+.+.+.+.
T Consensus 77 ~-~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~ 116 (361)
T KOG1430|consen 77 A-VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKEL 116 (361)
T ss_pred c-eEEEeccccCccccccchhhheeecchhHHHHHHHHHHh
Confidence 9 666643 3 232222236656667777667777777764
No 331
>PRK06924 short chain dehydrogenase; Provisional
Probab=92.49 E-value=0.23 Score=47.29 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
|++|.|+||+|.+|.+++..|+..+.
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g~ 26 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKGT 26 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcCC
Confidence 35799999999999999999998763
No 332
>PRK07985 oxidoreductase; Provisional
Probab=92.48 E-value=1.6 Score=43.27 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=22.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
.++.|+||+|.||.+++..|+..+.
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~ 74 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGA 74 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC
Confidence 4899999999999999999998763
No 333
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=92.47 E-value=1.7 Score=41.96 Aligned_cols=115 Identities=10% Similarity=-0.066 Sum_probs=63.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEE-ec--Ccc-----
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NPY----- 167 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i-~~--~~~----- 167 (439)
..++.|+||+|.||.+++..|+..+. .+.+ .+++.++++....++.... .++.. .. .++
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~G~-----~vv~----~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~ 76 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKAGA-----TIVF----NDINQELVDKGLAAYRELG----IEAHGYVCDVTDEDGVQA 76 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHHHhcC----CceEEEEcCCCCHHHHHH
Confidence 35799999999999999999998763 2444 3566666666555554321 11111 11 111
Q ss_pred ------cccCCCcEEEEeCCcCC-CC-CCch----hhhHHHHH----HHHHHHHHHHHhhcCCCeEEEEeCCch
Q 013619 168 ------ELFEDAEWALLIGAKPR-GP-GMER----AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNPC 225 (439)
Q Consensus 168 ------eal~dADiVIitag~~~-kp-g~~r----~~ll~~N~----~ii~~i~~~i~~~a~p~aivIvvtNPv 225 (439)
+.+..-|++|..+|... .+ .... ...+..|. .+.+.+.+.+.+. ..+.||+++...
T Consensus 77 ~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~g~iv~isS~~ 148 (265)
T PRK07097 77 MVSQIEKEVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKK--GHGKIINICSMM 148 (265)
T ss_pred HHHHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhc--CCcEEEEEcCcc
Confidence 22345799999888532 11 1111 12233342 2334455555552 456777777653
No 334
>PRK06153 hypothetical protein; Provisional
Probab=92.45 E-value=0.2 Score=52.02 Aligned_cols=56 Identities=20% Similarity=0.062 Sum_probs=35.9
Q ss_pred CcceeeEEeecccchHH--H-hhccCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEec
Q 013619 73 DCYGVFCLTYDLKAEEE--T-KSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLL 133 (439)
Q Consensus 73 ~~~gv~~~~~~~~~~~~--~-~~~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~ 133 (439)
+--+||+-.-.+..... . ...-+..||+|||+ |.+|+.++..|+..++ + +|.|.+.
T Consensus 150 ~~~svf~y~dt~s~R~~i~~~q~kL~~~~VaIVG~-GG~GS~Va~~LAR~GV-g---eI~LVD~ 208 (393)
T PRK06153 150 EEDSVFNYPDTASSRAGIGALSAKLEGQRIAIIGL-GGTGSYILDLVAKTPV-R---EIHLFDG 208 (393)
T ss_pred ccCCceehhhhhccccChHHHHHHHhhCcEEEEcC-CccHHHHHHHHHHcCC-C---EEEEECC
Confidence 33578875444333311 0 11123469999995 9999999999999886 2 3666443
No 335
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=92.43 E-value=0.22 Score=47.99 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=30.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHH
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV 145 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~ 145 (439)
+..++.|+||+|.||.+++..|+..+. .+.+ .+++.+.++..
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~l 45 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGA-----RVAV----LDKSAAGLQEL 45 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHH
Confidence 346899999999999999999998763 2544 35665555543
No 336
>PRK05599 hypothetical protein; Provisional
Probab=92.39 E-value=1.2 Score=42.68 Aligned_cols=118 Identities=14% Similarity=0.148 Sum_probs=64.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCC--ccEEEec---------C
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL--REVKIGI---------N 165 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~--~~v~i~~---------~ 165 (439)
|.+.|+||++.+|.+++..|++ + . .+.+ .+++.++++..+.++........ ....++. .
T Consensus 1 ~~vlItGas~GIG~aia~~l~~-g-~----~Vil----~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 70 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLCH-G-E----DVVL----AARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQ 70 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHhC-C-C----EEEE----EeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHH
Confidence 3588999999999999999884 3 1 2555 36777888877777754210000 0111111 0
Q ss_pred cccccCCCcEEEEeCCcCCCCC---Cch---hhhHHHH----HHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 013619 166 PYELFEDAEWALLIGAKPRGPG---MER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (439)
Q Consensus 166 ~~eal~dADiVIitag~~~kpg---~~r---~~ll~~N----~~ii~~i~~~i~~~a~p~aivIvvtNPv 225 (439)
-.+.+..-|++|..+|...... .+. .+....| ..+...+.+.+.+. ..++.|++++.-.
T Consensus 71 ~~~~~g~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-~~~g~Iv~isS~~ 139 (246)
T PRK05599 71 TQELAGEISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQ-TAPAAIVAFSSIA 139 (246)
T ss_pred HHHhcCCCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhc-CCCCEEEEEeccc
Confidence 1223356899999888642111 111 1222223 22333444666553 2357777777643
No 337
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.37 E-value=0.64 Score=44.08 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcC
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGE 120 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~ 120 (439)
+.++|.|+||+|.||.+++..|+..+
T Consensus 4 ~~k~ilItGas~gIG~~la~~l~~~G 29 (253)
T PRK08642 4 SEQTVLVTGGSRGLGAAIARAFAREG 29 (253)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCC
Confidence 34589999999999999999998876
No 338
>PRK07062 short chain dehydrogenase; Provisional
Probab=92.36 E-value=2.2 Score=40.97 Aligned_cols=115 Identities=13% Similarity=0.090 Sum_probs=64.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEE-Ee--cCccc-----
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IG--INPYE----- 168 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~-i~--~~~~e----- 168 (439)
..+.|+||+|.||.+++..|+..+. .+.+ .+++.++++....++.... +- .++. +. ..+.+
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~-~~~~~~~~D~~~~~~v~~~ 77 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGA-----SVAI----CGRDEERLASAEARLREKF-PG-ARLLAARCDVLDEADVAAF 77 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHHHhhC-CC-ceEEEEEecCCCHHHHHHH
Confidence 4799999999999999999998763 2544 4666677776666664321 10 1111 11 11221
Q ss_pred ------ccCCCcEEEEeCCcCCC-C--CCch---hhhHHHH----HHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 013619 169 ------LFEDAEWALLIGAKPRG-P--GMER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 169 ------al~dADiVIitag~~~k-p--g~~r---~~ll~~N----~~ii~~i~~~i~~~a~p~aivIvvtNP 224 (439)
.+...|++|..+|.... + ..+. ...+..| ....+.+.+.+++. ..+.|++++.-
T Consensus 78 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~g~iv~isS~ 147 (265)
T PRK07062 78 AAAVEARFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRAS--AAASIVCVNSL 147 (265)
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcc--CCcEEEEeccc
Confidence 23457999999886421 1 1111 1122223 33455555666653 34667766543
No 339
>PRK06500 short chain dehydrogenase; Provisional
Probab=92.33 E-value=0.56 Score=44.36 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=31.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHH
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME 148 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~D 148 (439)
.+|.|+||+|.+|.+++..|+..+. .+.+ .+++.+.++....+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~-----~v~~----~~r~~~~~~~~~~~ 49 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGA-----RVAI----TGRDPASLEAARAE 49 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----ecCCHHHHHHHHHH
Confidence 5899999999999999999998763 2444 35565555544333
No 340
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=92.31 E-value=0.58 Score=46.81 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=47.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEeccc---------------ccchhhHHHHHHHHhcccCCCCccEE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS---------------ERSLQALEGVAMELEDSLFPLLREVK 161 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~---------------d~~~e~l~g~a~DL~~~~~~~~~~v~ 161 (439)
.||.|+|+ |.+|..+|..|+..++- .|.|++.|. |+...|++..+..|...- |. .++.
T Consensus 20 s~VLIvG~-gGLG~EiaKnLalaGVg----~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLN-p~-V~V~ 92 (286)
T cd01491 20 SNVLISGL-GGLGVEIAKNLILAGVK----SVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELN-PY-VPVT 92 (286)
T ss_pred CcEEEEcC-CHHHHHHHHHHHHcCCC----eEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHC-CC-CEEE
Confidence 49999995 99999999999998873 366654321 111234444444444222 22 2333
Q ss_pred Eec--CcccccCCCcEEEEeC
Q 013619 162 IGI--NPYELFEDAEWALLIG 180 (439)
Q Consensus 162 i~~--~~~eal~dADiVIita 180 (439)
... .+.+.+.+.|+||.+.
T Consensus 93 ~~~~~~~~~~l~~fdvVV~~~ 113 (286)
T cd01491 93 VSTGPLTTDELLKFQVVVLTD 113 (286)
T ss_pred EEeccCCHHHHhcCCEEEEec
Confidence 332 2467889999998873
No 341
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=92.30 E-value=0.89 Score=45.44 Aligned_cols=67 Identities=16% Similarity=0.061 Sum_probs=42.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (439)
..||+|+|+ |.+|..++..|...+. .|.+ .+++.+++.. +.++ . . ..+. ..+..+.++++|+
T Consensus 151 gk~v~IiG~-G~iG~avA~~L~~~G~-----~V~v----~~R~~~~~~~-~~~~--g---~-~~~~-~~~l~~~l~~aDi 212 (287)
T TIGR02853 151 GSNVMVLGF-GRTGMTIARTFSALGA-----RVFV----GARSSADLAR-ITEM--G---L-IPFP-LNKLEEKVAEIDI 212 (287)
T ss_pred CCEEEEEcC-hHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHH-HHHC--C---C-eeec-HHHHHHHhccCCE
Confidence 469999995 9999999999987663 2555 4666554432 1111 1 1 0011 1234567899999
Q ss_pred EEEeC
Q 013619 176 ALLIG 180 (439)
Q Consensus 176 VIita 180 (439)
||++.
T Consensus 213 Vint~ 217 (287)
T TIGR02853 213 VINTI 217 (287)
T ss_pred EEECC
Confidence 99974
No 342
>PRK06057 short chain dehydrogenase; Provisional
Probab=92.23 E-value=2.1 Score=40.89 Aligned_cols=45 Identities=18% Similarity=0.121 Sum_probs=32.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHH
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL 149 (439)
..+|.|+||+|.||.+++..++..+. .+.+ ++++.+.++....++
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~ 51 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGA-----TVVV----GDIDPEAGKAAADEV 51 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHc
Confidence 35899999999999999999998763 2444 355555555444444
No 343
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=92.22 E-value=0.62 Score=47.77 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~ 120 (439)
++||+|+||+|.+|..++..|...+
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p 27 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHP 27 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCC
Confidence 4799999999999999999888654
No 344
>PRK06046 alanine dehydrogenase; Validated
Probab=92.19 E-value=0.45 Score=48.32 Aligned_cols=74 Identities=15% Similarity=0.166 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (439)
...+|+|||+ |..|...+..+....-+ +.+.+ .|++.++++..+.++.+.. + .++.+..+..+.+. +|
T Consensus 128 ~~~~vgiiG~-G~qa~~h~~al~~~~~i---~~v~v----~~r~~~~~~~~~~~~~~~~-~--~~v~~~~~~~~~l~-aD 195 (326)
T PRK06046 128 DSKVVGIIGA-GNQARTQLLALSEVFDL---EEVRV----YDRTKSSAEKFVERMSSVV-G--CDVTVAEDIEEACD-CD 195 (326)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhhCCc---eEEEE----ECCCHHHHHHHHHHHHhhc-C--ceEEEeCCHHHHhh-CC
Confidence 4579999995 99999988877753322 33655 4777788888777775321 1 23455555556665 99
Q ss_pred EEEEeC
Q 013619 175 WALLIG 180 (439)
Q Consensus 175 iVIita 180 (439)
+|+++-
T Consensus 196 iVv~aT 201 (326)
T PRK06046 196 ILVTTT 201 (326)
T ss_pred EEEEec
Confidence 999863
No 345
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=92.16 E-value=2.1 Score=40.48 Aligned_cols=74 Identities=18% Similarity=0.102 Sum_probs=45.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEE-e--cCc-------
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-G--INP------- 166 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i-~--~~~------- 166 (439)
++|.|+||+|.+|.+++..|+..+. .+.+ .+++.+.++....++.... .++.. . ..+
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~-----~v~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~ 68 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA-----NVVV----NDLGEAGAEAAAKVATDAG----GSVIYLVADVTKEDEIADM 68 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CceEEEECCCCCHHHHHHH
Confidence 4799999999999999999987663 2444 3555555554444443211 11111 1 111
Q ss_pred ----ccccCCCcEEEEeCCcC
Q 013619 167 ----YELFEDAEWALLIGAKP 183 (439)
Q Consensus 167 ----~eal~dADiVIitag~~ 183 (439)
.+.+.+.|+||..+|..
T Consensus 69 ~~~~~~~~~~~d~vi~~a~~~ 89 (255)
T TIGR01963 69 IAAAAAEFGGLDILVNNAGIQ 89 (255)
T ss_pred HHHHHHhcCCCCEEEECCCCC
Confidence 22356789999988753
No 346
>PRK07576 short chain dehydrogenase; Provisional
Probab=92.12 E-value=1.6 Score=42.28 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=33.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHh
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~ 150 (439)
..+|.|+||+|.||.+++..|+..+. .+.+ .+++.+.++....++.
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~ 54 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARAGA-----NVAV----ASRSQEKVDAAVAQLQ 54 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 35899999999999999999987653 2444 3555566655555554
No 347
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=92.08 E-value=0.52 Score=46.73 Aligned_cols=98 Identities=17% Similarity=0.232 Sum_probs=52.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (439)
|||.|+||+|.+|+++...|...+. ++.. .++. -.|+.|.. .+ ....+.. +-|+|
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~-----~v~~----~~r~-------~~dl~d~~-~~-------~~~~~~~-~pd~V 55 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGY-----EVIA----TSRS-------DLDLTDPE-AV-------AKLLEAF-KPDVV 55 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSE-----EEEE----ESTT-------CS-TTSHH-HH-------HHHHHHH---SEE
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCC-----EEEE----eCch-------hcCCCCHH-HH-------HHHHHHh-CCCeE
Confidence 7999999999999999999886542 1222 1111 01111110 00 0001112 47899
Q ss_pred EEeCCcCCCCC--CchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeC
Q 013619 177 LLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (439)
Q Consensus 177 Iitag~~~kpg--~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvt 222 (439)
|.+|+...... .+.......|......+++...+. ++.+|-++
T Consensus 56 in~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~---~~~li~~S 100 (286)
T PF04321_consen 56 INCAAYTNVDACEKNPEEAYAINVDATKNLAEACKER---GARLIHIS 100 (286)
T ss_dssp EE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHC---T-EEEEEE
T ss_pred eccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHc---CCcEEEee
Confidence 99988643211 234556778888888888888874 45665554
No 348
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=92.08 E-value=1.6 Score=41.26 Aligned_cols=26 Identities=19% Similarity=0.118 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
.++|.|+||+|.||.+++..|+..+.
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~ 30 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEAGA 30 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999998763
No 349
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=92.06 E-value=0.91 Score=46.15 Aligned_cols=68 Identities=21% Similarity=0.263 Sum_probs=43.4
Q ss_pred CEEEEEcCCCc--------------------hHHHHHHHHHhcCCCCCCCceEEEecccccchhhHH-HHHHHHhcccCC
Q 013619 97 VNIAVSGAAGM--------------------IANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFP 155 (439)
Q Consensus 97 ~KI~IIGA~G~--------------------VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~-g~a~DL~~~~~~ 155 (439)
|||+|-|| || -|..+|..|+..+. ++.+ .|++.++++ ..+..+.+..
T Consensus 1 ~~~~~~g~-gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGh-----eV~V----~Drnrsa~e~e~~e~LaeaG-- 68 (341)
T TIGR01724 1 MKVSVYGA-GNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGH-----DVVL----AEPNREFMSDDLWKKVEDAG-- 68 (341)
T ss_pred CeeEEecC-cchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCC-----EEEE----EeCChhhhhhhhhHHHHHCC--
Confidence 68888885 65 37788988887663 2545 356555442 2233344321
Q ss_pred CCccEEEecCcccccCCCcEEEEeC
Q 013619 156 LLREVKIGINPYELFEDAEWALLIG 180 (439)
Q Consensus 156 ~~~~v~i~~~~~eal~dADiVIita 180 (439)
.....+..++.++||+||++-
T Consensus 69 ----A~~AaS~aEAAa~ADVVIL~L 89 (341)
T TIGR01724 69 ----VKVVSDDKEAAKHGEIHVLFT 89 (341)
T ss_pred ----CeecCCHHHHHhCCCEEEEec
Confidence 234556789999999999973
No 350
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=92.04 E-value=0.24 Score=49.56 Aligned_cols=63 Identities=11% Similarity=0.151 Sum_probs=41.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (439)
|||+||| .|++|..++..|+..+. ++.++ |++.. .+ ++... . .....+..+..++||+|
T Consensus 1 m~Ig~IG-lG~MG~~ma~~L~~~G~-----~v~v~----~~~~~-~~----~~~~~--g----~~~~~s~~~~~~~advV 59 (292)
T PRK15059 1 MKLGFIG-LGIMGTPMAINLARAGH-----QLHVT----TIGPV-AD----ELLSL--G----AVSVETARQVTEASDII 59 (292)
T ss_pred CeEEEEc-cCHHHHHHHHHHHHCCC-----eEEEE----eCCHh-HH----HHHHc--C----CeecCCHHHHHhcCCEE
Confidence 5899999 59999999999998763 24442 33322 22 22211 1 12334566778999999
Q ss_pred EEeC
Q 013619 177 LLIG 180 (439)
Q Consensus 177 Iita 180 (439)
|++.
T Consensus 60 i~~v 63 (292)
T PRK15059 60 FIMV 63 (292)
T ss_pred EEeC
Confidence 9973
No 351
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=92.00 E-value=2.6 Score=40.30 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
.+++.|+||+|.||.+++..|+..+.
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~ 33 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGA 33 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 35899999999999999999998763
No 352
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=91.97 E-value=0.81 Score=46.36 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=40.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (439)
.+||+|||+ |++|.+++..|...+. .+.+. .+.+.+.++.. .+ +. +.. .+..+++++||+
T Consensus 3 ~kkIgiIG~-G~mG~AiA~~L~~sG~-----~Viv~---~~~~~~~~~~a-~~--~G-------v~~-~s~~ea~~~ADi 62 (314)
T TIGR00465 3 GKTVAIIGY-GSQGHAQALNLRDSGL-----NVIVG---LRKGGASWKKA-TE--DG-------FKV-GTVEEAIPQADL 62 (314)
T ss_pred cCEEEEEeE-cHHHHHHHHHHHHCCC-----eEEEE---ECcChhhHHHH-HH--CC-------CEE-CCHHHHHhcCCE
Confidence 468999995 9999999999998764 13322 13322333211 11 11 122 236678899999
Q ss_pred EEEeC
Q 013619 176 ALLIG 180 (439)
Q Consensus 176 VIita 180 (439)
|+++.
T Consensus 63 VvLaV 67 (314)
T TIGR00465 63 IMNLL 67 (314)
T ss_pred EEEeC
Confidence 99983
No 353
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=91.96 E-value=0.51 Score=45.42 Aligned_cols=45 Identities=20% Similarity=0.239 Sum_probs=33.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHH
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL 149 (439)
.+++.|+||+|.||.+++..|+..+. .|.+ .+++.++++....++
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~ 50 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEGA-----RVAV----LERSAEKLASLRQRF 50 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHh
Confidence 45899999999999999999998763 2544 366666666554444
No 354
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=91.93 E-value=1.3 Score=49.28 Aligned_cols=115 Identities=19% Similarity=0.108 Sum_probs=62.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccch--hhHHHHHHHHhcccCCCCccEEEe-cC--ccc-
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL--QALEGVAMELEDSLFPLLREVKIG-IN--PYE- 168 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~--e~l~g~a~DL~~~~~~~~~~v~i~-~~--~~e- 168 (439)
+++||.|+||+|+||++++..|+..+. + -.|.. .|+.. +.+.. +.... ...++... .| +.+
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~-~--~~V~~----~d~~~~~~~~~~----l~~~~--~~~~v~~~~~Dl~d~~~ 71 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYP-D--YKIVV----LDKLDYCSNLKN----LNPSK--SSPNFKFVKGDIASADL 71 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCC-C--CEEEE----EeCCCccchhhh----hhhcc--cCCCeEEEECCCCChHH
Confidence 457999999999999999999997631 1 12322 13211 11111 11000 00112211 11 111
Q ss_pred ---c--cCCCcEEEEeCCcCCCCC--CchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 169 ---L--FEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 169 ---a--l~dADiVIitag~~~kpg--~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
. ..++|+||.+|+...... ....+....|+.-...+.+.+++. +.-..+|.++-
T Consensus 72 ~~~~~~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~-~~vkr~I~~SS 132 (668)
T PLN02260 72 VNYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVT-GQIRRFIHVST 132 (668)
T ss_pred HHHHHhhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEEcc
Confidence 1 257999999988643211 122345677877777787777774 32235666554
No 355
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=91.92 E-value=1.9 Score=40.83 Aligned_cols=47 Identities=23% Similarity=0.212 Sum_probs=32.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHh
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~ 150 (439)
..++.|+||+|.+|.+++..|+..+. .+.+. ..++.+.++....++.
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~g~-----~v~~~---~~~~~~~~~~~~~~l~ 52 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQEGA-----KVVIN---YNSSKEAAENLVNELG 52 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-----EEEEE---cCCcHHHHHHHHHHHH
Confidence 35899999999999999999998663 24331 2334455555555554
No 356
>PRK06179 short chain dehydrogenase; Provisional
Probab=91.91 E-value=1.4 Score=42.44 Aligned_cols=25 Identities=28% Similarity=0.147 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~ 120 (439)
..+|.|+||+|.||.+++..|+..+
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g 28 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAG 28 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCC
Confidence 3579999999999999999999876
No 357
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=91.90 E-value=0.39 Score=49.02 Aligned_cols=74 Identities=24% Similarity=0.165 Sum_probs=54.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (439)
....++|||+ |..+..-+..+..- ++- ++|.+ .+++.+..+..+.++.+.. ...+....+..+++++||
T Consensus 129 da~~laiIGa-G~qA~~ql~a~~~v--~~~-~~I~i----~~r~~~~~e~~a~~l~~~~---~~~v~a~~s~~~av~~aD 197 (330)
T COG2423 129 DASTLAIIGA-GAQARTQLEALKAV--RDI-REIRV----YSRDPEAAEAFAARLRKRG---GEAVGAADSAEEAVEGAD 197 (330)
T ss_pred CCcEEEEECC-cHHHHHHHHHHHhh--CCc-cEEEE----EcCCHHHHHHHHHHHHhhc---CccceeccCHHHHhhcCC
Confidence 3568999995 98888877766653 322 34666 4788899999988887542 224666677799999999
Q ss_pred EEEEe
Q 013619 175 WALLI 179 (439)
Q Consensus 175 iVIit 179 (439)
+|+.+
T Consensus 198 iIvt~ 202 (330)
T COG2423 198 IVVTA 202 (330)
T ss_pred EEEEe
Confidence 99986
No 358
>PRK12743 oxidoreductase; Provisional
Probab=91.88 E-value=3 Score=39.88 Aligned_cols=25 Identities=16% Similarity=0.056 Sum_probs=22.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
.+|.|+||+|.||.+++..|+..+.
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~ 27 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGF 27 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC
Confidence 4799999999999999999998763
No 359
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.87 E-value=1.3 Score=41.68 Aligned_cols=46 Identities=11% Similarity=0.173 Sum_probs=32.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHh
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~ 150 (439)
..+|.|+||+|.||.+++..|+..+. .+.+ .+++.+.+.....++.
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~ 50 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGA-----QVCI----NSRNENKLKRMKKTLS 50 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 35899999999999999999988663 2444 3556566554444443
No 360
>PRK09134 short chain dehydrogenase; Provisional
Probab=91.86 E-value=1.7 Score=41.57 Aligned_cols=26 Identities=31% Similarity=0.273 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcC
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGE 120 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~ 120 (439)
..+++.|+||+|.||.+++..|+..+
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g 33 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHG 33 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC
Confidence 34689999999999999999998766
No 361
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=91.85 E-value=0.38 Score=45.36 Aligned_cols=32 Identities=9% Similarity=0.073 Sum_probs=26.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEe
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL 132 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l 132 (439)
..||.|+|+ |.+|+.++..|+..++- .|.|.+
T Consensus 21 ~s~VlIiG~-gglG~evak~La~~GVg----~i~lvD 52 (197)
T cd01492 21 SARILLIGL-KGLGAEIAKNLVLSGIG----SLTILD 52 (197)
T ss_pred hCcEEEEcC-CHHHHHHHHHHHHcCCC----EEEEEE
Confidence 459999995 99999999999998863 366644
No 362
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=91.85 E-value=0.36 Score=48.77 Aligned_cols=103 Identities=17% Similarity=0.143 Sum_probs=55.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEE-----Ee--cCccc
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-----IG--INPYE 168 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~-----i~--~~~~e 168 (439)
|+||.|+||+|+||++++..|+..+. +.+.+ .+..... . ....+.+.. .. .++. ++ .+..+
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~----~~v~~----~~~~~~~-~-~~~~~~~~~-~~-~~~~~~~~Dl~d~~~~~~ 68 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETS----DAVVV----VDKLTYA-G-NLMSLAPVA-QS-ERFAFEKVDICDRAELAR 68 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCC----CEEEE----EecCccc-c-chhhhhhcc-cC-CceEEEECCCcChHHHHH
Confidence 46899999999999999999998652 12333 1322111 0 001111100 00 0111 11 11123
Q ss_pred ccC--CCcEEEEeCCcCCCC--CCchhhhHHHHHHHHHHHHHHHHh
Q 013619 169 LFE--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNA 210 (439)
Q Consensus 169 al~--dADiVIitag~~~kp--g~~r~~ll~~N~~ii~~i~~~i~~ 210 (439)
.++ +.|+||.+||..... ..........|..-...+.+.+.+
T Consensus 69 ~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~ 114 (355)
T PRK10217 69 VFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARA 114 (355)
T ss_pred HHhhcCCCEEEECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHH
Confidence 344 389999998864321 112345667777777777776655
No 363
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=91.85 E-value=1.7 Score=42.89 Aligned_cols=74 Identities=20% Similarity=0.203 Sum_probs=43.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCC-CccEEEecCcccccCCC
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFEDA 173 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~-~~~v~i~~~~~eal~dA 173 (439)
.+|||+|.||+|.+|..+...+.+.+- +.|.-- +|+......+ .|..... .. .-.+-++.+......++
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~------~~L~aa-~~~~~~~~~g--~d~ge~~-g~~~~gv~v~~~~~~~~~~~ 70 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPD------LELVAA-FDRPGSLSLG--SDAGELA-GLGLLGVPVTDDLLLVKADA 70 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCC------ceEEEE-EecCCccccc--cchhhhc-cccccCceeecchhhcccCC
Confidence 368999999999999999999887652 222211 2333222211 1111111 11 11344555567788899
Q ss_pred cEEEE
Q 013619 174 EWALL 178 (439)
Q Consensus 174 DiVIi 178 (439)
|++|=
T Consensus 71 DV~ID 75 (266)
T COG0289 71 DVLID 75 (266)
T ss_pred CEEEE
Confidence 99874
No 364
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=91.84 E-value=0.66 Score=42.18 Aligned_cols=74 Identities=18% Similarity=0.109 Sum_probs=44.1
Q ss_pred CCEEEEEcC-CCchHHHHHHHHHhcCCCCCCCceEEEecccccchh--h---HHHHHHHHhcccCCCCccEEEecCcccc
Q 013619 96 MVNIAVSGA-AGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ--A---LEGVAMELEDSLFPLLREVKIGINPYEL 169 (439)
Q Consensus 96 ~~KI~IIGA-~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e--~---l~g~a~DL~~~~~~~~~~v~i~~~~~ea 169 (439)
..||++||- -++|..+++..+..-+. .+.+ . .....+ . .-..+.+.... ....++++.+..++
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~~~g~-----~~~~--~-~P~~~~~~~~~~~~~~~~~~~~~---~g~~i~~~~~~~e~ 70 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLAKFGM-----EVVL--I-APEGLRYPPDPEVLEKAKKNAKK---NGGKITITDDIEEA 70 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHHHTTS-----EEEE--E-SSGGGGGSHHHHHHHHHHHHHHH---HTTEEEEESSHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHHHcCC-----EEEE--E-CCCcccCCCCHHHHHHHHHHHHH---hCCCeEEEeCHHHh
Confidence 469999994 37999999988887553 2333 2 122201 1 11122222111 12467888888899
Q ss_pred cCCCcEEEEeC
Q 013619 170 FEDAEWALLIG 180 (439)
Q Consensus 170 l~dADiVIita 180 (439)
+++||+|+...
T Consensus 71 l~~aDvvy~~~ 81 (158)
T PF00185_consen 71 LKGADVVYTDR 81 (158)
T ss_dssp HTT-SEEEEES
T ss_pred cCCCCEEEEcC
Confidence 99999998863
No 365
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=91.84 E-value=0.35 Score=48.27 Aligned_cols=74 Identities=12% Similarity=0.129 Sum_probs=48.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEec--CcccccCCC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYELFEDA 173 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~--~~~eal~dA 173 (439)
..++.|+|| |..|.++++.|+..+.. .|.+ .+++.++++.++.++.... +. ..+.... +..+.+.++
T Consensus 127 ~k~vlilGa-GGaarAi~~aL~~~g~~----~i~i----~nR~~~ka~~La~~~~~~~-~~-~~~~~~~~~~~~~~~~~~ 195 (283)
T PRK14027 127 LDSVVQVGA-GGVGNAVAYALVTHGVQ----KLQV----ADLDTSRAQALADVINNAV-GR-EAVVGVDARGIEDVIAAA 195 (283)
T ss_pred CCeEEEECC-cHHHHHHHHHHHHCCCC----EEEE----EcCCHHHHHHHHHHHhhcc-Cc-ceEEecCHhHHHHHHhhc
Confidence 458999996 99999999999987652 3666 4788888888877764221 11 0111111 112356789
Q ss_pred cEEEEeC
Q 013619 174 EWALLIG 180 (439)
Q Consensus 174 DiVIita 180 (439)
|+||.+-
T Consensus 196 divINaT 202 (283)
T PRK14027 196 DGVVNAT 202 (283)
T ss_pred CEEEEcC
Confidence 9999973
No 366
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=91.80 E-value=2 Score=41.27 Aligned_cols=47 Identities=21% Similarity=0.374 Sum_probs=33.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHh
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~ 150 (439)
..+|.|+||++.||.+++..|+..+. .+.+. ...+.+.++..+.++.
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~G~-----~v~~~---~~~~~~~~~~~~~~~~ 54 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQSGV-----NIAFT---YNSNVEEANKIAEDLE 54 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE---cCCCHHHHHHHHHHHH
Confidence 35899999999999999999998763 24442 2345566666666664
No 367
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=91.80 E-value=0.87 Score=46.23 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=44.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccc-cchhhHHHHHHHHhcccCCC-CccEEEecCcccccCCC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE-RSLQALEGVAMELEDSLFPL-LREVKIGINPYELFEDA 173 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d-~~~e~l~g~a~DL~~~~~~~-~~~v~i~~~~~eal~dA 173 (439)
.++|+| ||+|.||..+...|-.+++-= . .|+++.+. .+ .| +.. .| ...+.+..-..+++++.
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~fpv--~--~l~l~~s~~~s----~g------k~i-~f~g~~~~V~~l~~~~f~~v 66 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDLEI--E--QISIVEIEPFG----EE------QGI-RFNNKAVEQIAPEEVEWADF 66 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCCch--h--heeeccccccc----CC------CEE-EECCEEEEEEECCccCcccC
Confidence 368999 999999999999888776421 2 23334322 11 11 111 12 24566665567799999
Q ss_pred cEEEEeCC
Q 013619 174 EWALLIGA 181 (439)
Q Consensus 174 DiVIitag 181 (439)
|++++ +|
T Consensus 67 Dia~f-ag 73 (322)
T PRK06901 67 NYVFF-AG 73 (322)
T ss_pred CEEEE-cC
Confidence 99999 65
No 368
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.80 E-value=0.56 Score=47.99 Aligned_cols=33 Identities=12% Similarity=0.113 Sum_probs=26.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEec
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLL 133 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~ 133 (439)
..||.|||+ |.+|++++..|+..++- .|.|.+.
T Consensus 24 ~~~VlIiG~-GglGs~va~~La~aGvg----~i~lvD~ 56 (338)
T PRK12475 24 EKHVLIVGA-GALGAANAEALVRAGIG----KLTIADR 56 (338)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCC----EEEEEcC
Confidence 358999995 99999999999998862 2666443
No 369
>PRK12320 hypothetical protein; Provisional
Probab=91.79 E-value=0.29 Score=54.77 Aligned_cols=100 Identities=13% Similarity=0.096 Sum_probs=54.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEec-CcccccCCCcE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDAEW 175 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~-~~~eal~dADi 175 (439)
|||.|+||+|+||++++..|+..+. +|.. .+.+... +.+....+. ...+.. ...+.++++|+
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~-----~Vi~----ldr~~~~-------~~~~~ve~v-~~Dl~d~~l~~al~~~D~ 63 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGH-----TVSG----IAQHPHD-------ALDPRVDYV-CASLRNPVLQELAGEADA 63 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-----EEEE----EeCChhh-------cccCCceEE-EccCCCHHHHHHhcCCCE
Confidence 5899999999999999999987652 2332 2332111 010000000 000110 12345678999
Q ss_pred EEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeC
Q 013619 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (439)
Q Consensus 176 VIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvt 222 (439)
||.+++.. +.. -...|..-...+.+.+++. + ..+|.++
T Consensus 64 VIHLAa~~--~~~----~~~vNv~Gt~nLleAA~~~-G--vRiV~~S 101 (699)
T PRK12320 64 VIHLAPVD--TSA----PGGVGITGLAHVANAAARA-G--ARLLFVS 101 (699)
T ss_pred EEEcCccC--ccc----hhhHHHHHHHHHHHHHHHc-C--CeEEEEE
Confidence 99998642 111 1135666667777777664 3 3455554
No 370
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=91.76 E-value=1.8 Score=40.94 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=32.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHh
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~ 150 (439)
++|.|+||+|.||..++..|+..+. .+.+. ..++.+.++....++.
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~-----~v~~~---~~~~~~~~~~~~~~~~ 48 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGW-----SVGIN---YARDAAAAEETADAVR 48 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCC-----EEEEE---eCCCHHHHHHHHHHHH
Confidence 4799999999999999999998763 24332 1345566665555554
No 371
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.76 E-value=2.5 Score=39.79 Aligned_cols=46 Identities=22% Similarity=0.184 Sum_probs=32.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHh
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~ 150 (439)
..++.|+||+|.+|..++..|+..+. .+.+ .+++.++++....++.
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~-----~vi~----~~r~~~~~~~~~~~~~ 50 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGA-----KLAL----IDLNQEKLEEAVAECG 50 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 45899999999999999999988653 2444 3555566655555443
No 372
>PRK13243 glyoxylate reductase; Reviewed
Probab=91.75 E-value=0.31 Score=49.67 Aligned_cols=100 Identities=15% Similarity=0.128 Sum_probs=57.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (439)
-++|+||| .|+||..+|..|...+. .|.. .|++.+... .. ... +. ..+..+.+++||+
T Consensus 150 gktvgIiG-~G~IG~~vA~~l~~~G~-----~V~~----~d~~~~~~~--~~--~~~-------~~-~~~l~ell~~aDi 207 (333)
T PRK13243 150 GKTIGIIG-FGRIGQAVARRAKGFGM-----RILY----YSRTRKPEA--EK--ELG-------AE-YRPLEELLRESDF 207 (333)
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHCCC-----EEEE----ECCCCChhh--HH--HcC-------CE-ecCHHHHHhhCCE
Confidence 36999999 59999999999876553 2433 354432211 11 111 11 1346678999999
Q ss_pred EEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeC--CchhHHHHH
Q 013619 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG--NPCNTNALI 231 (439)
Q Consensus 176 VIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvt--NPvd~~t~i 231 (439)
|++..- ..+ .++ .++.. +.+... .+++++|+++ ..+|.-+.+
T Consensus 208 V~l~lP--~t~-~T~--------~~i~~--~~~~~m-k~ga~lIN~aRg~~vd~~aL~ 251 (333)
T PRK13243 208 VSLHVP--LTK-ETY--------HMINE--ERLKLM-KPTAILVNTARGKVVDTKALV 251 (333)
T ss_pred EEEeCC--CCh-HHh--------hccCH--HHHhcC-CCCeEEEECcCchhcCHHHHH
Confidence 999742 111 111 12211 234444 5789999998 455554443
No 373
>PRK08862 short chain dehydrogenase; Provisional
Probab=91.74 E-value=2.9 Score=39.80 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=35.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHh
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~ 150 (439)
...+.|+||++.+|.+++..|+..+. .|.+ .+++.++++..+.++.
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~l~~~~~~i~ 50 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGA-----TLIL----CDQDQSALKDTYEQCS 50 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHHH
Confidence 35799999999999999999998764 2555 4667777776665554
No 374
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=91.71 E-value=0.66 Score=45.63 Aligned_cols=108 Identities=17% Similarity=0.125 Sum_probs=59.3
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccch--hhHHHHHHHHhcccCCCCccEEEecCccc----ccCC
Q 013619 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL--QALEGVAMELEDSLFPLLREVKIGINPYE----LFED 172 (439)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~--e~l~g~a~DL~~~~~~~~~~v~i~~~~~e----al~d 172 (439)
|.|+||+|.||++++..|...+.. .+.+ .++.. +.+. ++.... ....+........ .+.+
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~----~v~~----~~~~~~~~~~~----~~~~~~--~~~d~~~~~~~~~~~~~~~~~ 66 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGIT----DILV----VDNLRDGHKFL----NLADLV--IADYIDKEDFLDRLEKGAFGK 66 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCc----eEEE----EecCCCchhhh----hhhhee--eeccCcchhHHHHHHhhccCC
Confidence 579999999999999999987631 2433 12221 1111 111000 0000100000111 2358
Q ss_pred CcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 173 ADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
.|+||.+|+.+.....+.......|..-...+.+.+.+. + ..+|.++.
T Consensus 67 ~D~vvh~A~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~--~~~v~~SS 114 (314)
T TIGR02197 67 IEAIFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEK-G--IPFIYASS 114 (314)
T ss_pred CCEEEECccccCccccchHHHHHHHHHHHHHHHHHHHHh-C--CcEEEEcc
Confidence 999999988643222234456678888888888888775 2 24555554
No 375
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=91.70 E-value=0.42 Score=44.04 Aligned_cols=93 Identities=20% Similarity=0.192 Sum_probs=53.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (439)
..+|+||| .|+||..++..+..-+. .|.. .|+...... ...+.. + -..+..+.++.||+
T Consensus 36 g~tvgIiG-~G~IG~~vA~~l~~fG~-----~V~~----~d~~~~~~~----~~~~~~------~-~~~~l~ell~~aDi 94 (178)
T PF02826_consen 36 GKTVGIIG-YGRIGRAVARRLKAFGM-----RVIG----YDRSPKPEE----GADEFG------V-EYVSLDELLAQADI 94 (178)
T ss_dssp TSEEEEES-TSHHHHHHHHHHHHTT------EEEE----EESSCHHHH----HHHHTT------E-EESSHHHHHHH-SE
T ss_pred CCEEEEEE-EcCCcCeEeeeeecCCc-----eeEE----ecccCChhh----hccccc------c-eeeehhhhcchhhh
Confidence 46999999 59999999999886553 2433 355433222 111111 1 12356788899999
Q ss_pred EEEeCC-cCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 013619 176 ALLIGA-KPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 176 VIitag-~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNP 224 (439)
|++... .+...+ ++ |.+ .+.+. .+++++|+++--
T Consensus 95 v~~~~plt~~T~~-----li--~~~-------~l~~m-k~ga~lvN~aRG 129 (178)
T PF02826_consen 95 VSLHLPLTPETRG-----LI--NAE-------FLAKM-KPGAVLVNVARG 129 (178)
T ss_dssp EEE-SSSSTTTTT-----SB--SHH-------HHHTS-TTTEEEEESSSG
T ss_pred hhhhhccccccce-----ee--eee-------eeecc-ccceEEEeccch
Confidence 999742 121111 11 112 34444 578999999854
No 376
>PRK06701 short chain dehydrogenase; Provisional
Probab=91.67 E-value=2.6 Score=41.61 Aligned_cols=138 Identities=14% Similarity=-0.002 Sum_probs=71.1
Q ss_pred cceeeEEeecccchHH--Hhhcc--CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccch-hhHHHHHHH
Q 013619 74 CYGVFCLTYDLKAEEE--TKSWK--KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL-QALEGVAME 148 (439)
Q Consensus 74 ~~gv~~~~~~~~~~~~--~~~~~--~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~-e~l~g~a~D 148 (439)
.-|+--+||-++.-+. .+.+. +.++|.|+||+|.||.+++..|+..+. .+.+. +++. +.++....+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~iLItGasggIG~~la~~l~~~G~-----~V~l~----~r~~~~~~~~~~~~ 90 (290)
T PRK06701 20 QPGIESLMNPLPQFEAPNYKGSGKLKGKVALITGGDSGIGRAVAVLFAKEGA-----DIAIV----YLDEHEDANETKQR 90 (290)
T ss_pred CcChhhhCCcccCCCccccccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE----eCCcchHHHHHHHH
Confidence 3477777777654222 11111 246899999999999999999998763 24442 3332 223333333
Q ss_pred HhcccCCCCccEE-EecC--ccc-----------ccCCCcEEEEeCCcCC--CCC--Cch---hhhHHHHHHHHHHHHHH
Q 013619 149 LEDSLFPLLREVK-IGIN--PYE-----------LFEDAEWALLIGAKPR--GPG--MER---AGLLDINGQIFAEQGKA 207 (439)
Q Consensus 149 L~~~~~~~~~~v~-i~~~--~~e-----------al~dADiVIitag~~~--kpg--~~r---~~ll~~N~~ii~~i~~~ 207 (439)
+... . .++. +..| +.+ .+...|+||..+|... .+- .+. ...+..|..-...+.+.
T Consensus 91 ~~~~--~--~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a 166 (290)
T PRK06701 91 VEKE--G--VKCLLIPGDVSDEAFCKDAVEETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKA 166 (290)
T ss_pred HHhc--C--CeEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHH
Confidence 3311 1 1111 1111 111 1235799999887532 111 111 23456665555555555
Q ss_pred HHhhcCCCeEEEEeCCc
Q 013619 208 LNAVASRNVKVIVVGNP 224 (439)
Q Consensus 208 i~~~a~p~aivIvvtNP 224 (439)
+..+-.+.+.+|+++.-
T Consensus 167 ~~~~~~~~g~iV~isS~ 183 (290)
T PRK06701 167 ALPHLKQGSAIINTGSI 183 (290)
T ss_pred HHHHHhhCCeEEEEecc
Confidence 54421234566666653
No 377
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=91.62 E-value=0.44 Score=47.51 Aligned_cols=95 Identities=19% Similarity=0.282 Sum_probs=61.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccC--CCc
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DAE 174 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~--dAD 174 (439)
|||.|+|+.|++|..|...|. .+ + +.+.+ +... +|+.+.. ...+.++ .-|
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~-~---~v~a~-----~~~~-------~Ditd~~-----------~v~~~i~~~~PD 52 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GE-F---EVIAT-----DRAE-------LDITDPD-----------AVLEVIRETRPD 52 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CC-c---eEEec-----cCcc-------ccccChH-----------HHHHHHHhhCCC
Confidence 579999999999999999876 21 1 11222 2211 3333322 0122333 459
Q ss_pred EEEEeCCcCC--CCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeC
Q 013619 175 WALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (439)
Q Consensus 175 iVIitag~~~--kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvt 222 (439)
+||.+|.+.. +...++..-+..|+.-...+++..++. ++++|-+|
T Consensus 53 vVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~---ga~lVhiS 99 (281)
T COG1091 53 VVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEV---GARLVHIS 99 (281)
T ss_pred EEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHh---CCeEEEee
Confidence 9999988754 344567777889998899999888886 45566554
No 378
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=91.61 E-value=2.2 Score=40.83 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
..+|.|+||+|.||.+++..|+..+.
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G~ 40 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAGA 40 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999998663
No 379
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=91.61 E-value=2.2 Score=40.81 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=34.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhc
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~ 151 (439)
.++|.|+||+|.||.+++..|+..+. .+.+ .+++.+.++..+.++.+
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~G~-----~vv~----~~r~~~~~~~~~~~l~~ 57 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATAGA-----SVVV----SDINADAANHVVDEIQQ 57 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHHHh
Confidence 46899999999999999999998763 2444 35566666666666653
No 380
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.50 E-value=2 Score=40.64 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
..+|.|+||+|.||.+++..|+..+.
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g~ 31 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEGS 31 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999997663
No 381
>PRK05872 short chain dehydrogenase; Provisional
Probab=91.47 E-value=2.1 Score=42.25 Aligned_cols=76 Identities=22% Similarity=0.187 Sum_probs=48.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCC-ccEEEecCcc-------
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGINPY------- 167 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~-~~v~i~~~~~------- 167 (439)
..+|.|+||+|.||.+++..|+..+. .+.+ .+++.++++..+.++.... ... ....++ +.
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~l~~~~~~l~~~~-~~~~~~~Dv~--d~~~v~~~~ 76 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGA-----KLAL----VDLEEAELAALAAELGGDD-RVLTVVADVT--DLAAMQAAA 76 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhcCCC-cEEEEEecCC--CHHHHHHHH
Confidence 35899999999999999999998763 2544 3667777776666664211 000 001111 11
Q ss_pred ----cccCCCcEEEEeCCcC
Q 013619 168 ----ELFEDAEWALLIGAKP 183 (439)
Q Consensus 168 ----eal~dADiVIitag~~ 183 (439)
+.+...|+||..+|..
T Consensus 77 ~~~~~~~g~id~vI~nAG~~ 96 (296)
T PRK05872 77 EEAVERFGGIDVVVANAGIA 96 (296)
T ss_pred HHHHHHcCCCCEEEECCCcC
Confidence 1235679999998863
No 382
>PRK08818 prephenate dehydrogenase; Provisional
Probab=91.42 E-value=1.1 Score=46.63 Aligned_cols=87 Identities=13% Similarity=0.139 Sum_probs=51.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (439)
..+||+|||.+|-+|..++..|... .+. .|.- +|++ |.. ..+..+.+++||
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~--~~~--~V~g----~D~~------------d~~---------~~~~~~~v~~aD 53 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTR--MQL--EVIG----HDPA------------DPG---------SLDPATLLQRAD 53 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhc--CCC--EEEE----EcCC------------ccc---------cCCHHHHhcCCC
Confidence 3469999995599999999999865 221 2322 3442 111 123456789999
Q ss_pred EEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 175 iVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
+||++.- ...+.+++.++++..... .|+++|.-++.
T Consensus 54 lVilavP------------v~~~~~~l~~l~~~~~~l-~~~~iVtDVgS 89 (370)
T PRK08818 54 VLIFSAP------------IRHTAALIEEYVALAGGR-AAGQLWLDVTS 89 (370)
T ss_pred EEEEeCC------------HHHHHHHHHHHhhhhcCC-CCCeEEEECCC
Confidence 9999832 122334444444422112 46777776664
No 383
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=91.41 E-value=0.49 Score=39.92 Aligned_cols=67 Identities=18% Similarity=0.277 Sum_probs=43.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc-CCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccC--CC
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DA 173 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~-~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~--dA 173 (439)
+||+|||+ |++|......+... +-+ +.+.+ .|++.++++..+.... +...++..+.+. +.
T Consensus 1 i~v~iiG~-G~~g~~~~~~~~~~~~~~---~v~~v----~d~~~~~~~~~~~~~~---------~~~~~~~~~ll~~~~~ 63 (120)
T PF01408_consen 1 IRVGIIGA-GSIGRRHLRALLRSSPDF---EVVAV----CDPDPERAEAFAEKYG---------IPVYTDLEELLADEDV 63 (120)
T ss_dssp EEEEEEST-SHHHHHHHHHHHHTTTTE---EEEEE----ECSSHHHHHHHHHHTT---------SEEESSHHHHHHHTTE
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCc---EEEEE----EeCCHHHHHHHHHHhc---------ccchhHHHHHHHhhcC
Confidence 58999995 99999988877765 221 11223 4677677665433221 125555566666 79
Q ss_pred cEEEEeC
Q 013619 174 EWALLIG 180 (439)
Q Consensus 174 DiVIita 180 (439)
|+|+++.
T Consensus 64 D~V~I~t 70 (120)
T PF01408_consen 64 DAVIIAT 70 (120)
T ss_dssp SEEEEES
T ss_pred CEEEEec
Confidence 9999974
No 384
>PRK08589 short chain dehydrogenase; Validated
Probab=91.37 E-value=3.5 Score=39.99 Aligned_cols=116 Identities=10% Similarity=0.011 Sum_probs=62.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCC-CccEEEecC---------
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGIN--------- 165 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~-~~~v~i~~~--------- 165 (439)
.+++.|+||+|.||.+++..|+..+. .+.+ .+++ +.++..+.++.+..... .....++..
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~-----~vi~----~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 75 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGA-----YVLA----VDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASE 75 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHH
Confidence 35799999999999999999998763 2544 3555 55665666664321000 001111110
Q ss_pred cccccCCCcEEEEeCCcCCCCC----Cch---hhhHHHHH----HHHHHHHHHHHhhcCCCeEEEEeCCc
Q 013619 166 PYELFEDAEWALLIGAKPRGPG----MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 166 ~~eal~dADiVIitag~~~kpg----~~r---~~ll~~N~----~ii~~i~~~i~~~a~p~aivIvvtNP 224 (439)
-.+.+...|++|..+|....++ .+. ...+..|. .+++.+.+.+.+. ++.||+++..
T Consensus 76 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~---~g~iv~isS~ 142 (272)
T PRK08589 76 IKEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQ---GGSIINTSSF 142 (272)
T ss_pred HHHHcCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc---CCEEEEeCch
Confidence 0112345799999988643211 111 12233342 3445555555542 3677777654
No 385
>PRK06914 short chain dehydrogenase; Provisional
Probab=91.32 E-value=2.1 Score=41.42 Aligned_cols=44 Identities=16% Similarity=0.086 Sum_probs=30.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHH
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL 149 (439)
..+.|+||+|.+|.+++..|+..+. .|.+ .+++.+.++....++
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~ 47 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGY-----LVIA----TMRNPEKQENLLSQA 47 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCC-----EEEE----EeCCHHHHHHHHHHH
Confidence 3689999999999999999998663 2444 345555555444443
No 386
>PRK07201 short chain dehydrogenase; Provisional
Probab=91.28 E-value=1.8 Score=47.56 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=64.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEE-ec--Cccc-----
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NPYE----- 168 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i-~~--~~~e----- 168 (439)
+++.|+||+|.+|.+++..|+..+. .|.+ .+++.+.++....++.... .++.. .. .+.+
T Consensus 372 k~vlItGas~giG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~~~~~ 438 (657)
T PRK07201 372 KVVLITGASSGIGRATAIKVAEAGA-----TVFL----VARNGEALDELVAEIRAKG----GTAHAYTCDLTDSAAVDHT 438 (657)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC----CcEEEEEecCCCHHHHHHH
Confidence 5799999999999999999998763 2544 3666677776666654321 11111 11 1222
Q ss_pred ------ccCCCcEEEEeCCcCCCCCC--------chhhhHHHHHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 169 ------LFEDAEWALLIGAKPRGPGM--------ERAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 169 ------al~dADiVIitag~~~kpg~--------~r~~ll~~N~~----ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
.+...|++|..+|....... +-...+..|.. +++.+.+.+.+. ..+.||+++.
T Consensus 439 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~g~iv~isS 509 (657)
T PRK07201 439 VKDILAEHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRER--RFGHVVNVSS 509 (657)
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--CCCEEEEECC
Confidence 12368999999886422110 11223445533 344445555553 3456777664
No 387
>PRK12742 oxidoreductase; Provisional
Probab=91.26 E-value=1.1 Score=41.98 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
.++|.|+||+|.||.+++..|+..+.
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~ 31 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGA 31 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 35899999999999999999998663
No 388
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=91.26 E-value=0.38 Score=49.22 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~ 120 (439)
|+||+|+||+|.+|..++..|...+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p 26 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHP 26 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCC
Confidence 4799999999999999999888654
No 389
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=91.23 E-value=0.94 Score=44.55 Aligned_cols=131 Identities=15% Similarity=0.065 Sum_probs=75.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc----CCCCCC--CceEEEecccc----cchhhHHHHHHHHhcccCCCCccEEEecCc
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAG----EVLGPD--QPIALKLLGSE----RSLQALEGVAMELEDSLFPLLREVKIGINP 166 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~----~l~~~~--~~I~L~l~~~d----~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~ 166 (439)
.||.|+|| |..|..++..|... ++-.++ +.|.|.+ .+ .+.+.+...-..+.+...+. ....+.
T Consensus 26 ~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD--~~Gll~~~r~~l~~~~~~~a~~~~~~----~~~~~L 98 (255)
T PF03949_consen 26 QRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIWLVD--SKGLLTDDREDLNPHKKPFARKTNPE----KDWGSL 98 (255)
T ss_dssp -EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEE--TTEEEBTTTSSHSHHHHHHHBSSSTT----T--SSH
T ss_pred cEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEe--ccceEeccCccCChhhhhhhccCccc----ccccCH
Confidence 59999996 99999999988876 652110 2365532 21 11123333344444332111 111568
Q ss_pred ccccCCC--cEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchh---HHHHHHHHHCCCCCC
Q 013619 167 YELFEDA--EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN---TNALICLKNAPSIPA 241 (439)
Q Consensus 167 ~eal~dA--DiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd---~~t~i~~k~s~~~p~ 241 (439)
.++++++ |++|=+.|.+ | -+-+++++.|.++ +.+.+|+-.+||.. +...-+++.+.+ +
T Consensus 99 ~eav~~~kPtvLIG~S~~~---g-----------~ft~evv~~Ma~~-~erPIIF~LSNPt~~aE~~peda~~~t~g--~ 161 (255)
T PF03949_consen 99 LEAVKGAKPTVLIGLSGQG---G-----------AFTEEVVRAMAKH-NERPIIFPLSNPTPKAECTPEDAYEWTDG--R 161 (255)
T ss_dssp HHHHHCH--SEEEECSSST---T-----------SS-HHHHHHCHHH-SSSEEEEE-SSSCGGSSS-HHHHHHTTTS--E
T ss_pred HHHHHhcCCCEEEEecCCC---C-----------cCCHHHHHHHhcc-CCCCEEEECCCCCCcccCCHHHHHhhCCc--e
Confidence 8999999 9988766543 2 1234566777777 78999999999975 445556666532 1
Q ss_pred Cceeccccch
Q 013619 242 KNFHALTRLD 251 (439)
Q Consensus 242 kvig~gt~LD 251 (439)
-+|.+|+-.+
T Consensus 162 ai~AtGSpf~ 171 (255)
T PF03949_consen 162 AIFATGSPFP 171 (255)
T ss_dssp EEEEESS---
T ss_pred EEEecCCccC
Confidence 2477776533
No 390
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=91.20 E-value=0.51 Score=48.58 Aligned_cols=78 Identities=22% Similarity=0.161 Sum_probs=46.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEeccc---------------ccchhhHHHHHHHHhcccCCCCccE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS---------------ERSLQALEGVAMELEDSLFPLLREV 160 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~---------------d~~~e~l~g~a~DL~~~~~~~~~~v 160 (439)
..||.|+|+ |.+|+.++..|+..++- .|.|.+.|. |+...|++..+..|...- |.. ++
T Consensus 28 ~~~VlivG~-GGlGs~~a~~La~~Gvg----~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n-p~v-~v 100 (355)
T PRK05597 28 DAKVAVIGA-GGLGSPALLYLAGAGVG----HITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN-PDV-KV 100 (355)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCC----eEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC-CCc-EE
Confidence 359999995 99999999999998863 266644332 111234444444444322 221 22
Q ss_pred EEe-----c-CcccccCCCcEEEEeC
Q 013619 161 KIG-----I-NPYELFEDAEWALLIG 180 (439)
Q Consensus 161 ~i~-----~-~~~eal~dADiVIita 180 (439)
... . +..+.++++|+||.+.
T Consensus 101 ~~~~~~i~~~~~~~~~~~~DvVvd~~ 126 (355)
T PRK05597 101 TVSVRRLTWSNALDELRDADVILDGS 126 (355)
T ss_pred EEEEeecCHHHHHHHHhCCCEEEECC
Confidence 221 1 1235679999999874
No 391
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=91.16 E-value=0.32 Score=49.73 Aligned_cols=70 Identities=27% Similarity=0.367 Sum_probs=40.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEEE
Q 013619 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (439)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVI 177 (439)
||+|+||+|.+|..++..|...+. . .+.|..+..+.+..+ ...+. ..+..+..-+.++++++|+|+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~h-p---~~~l~~~as~~~~g~----~~~~~------~~~~~~~~~~~~~~~~~D~v~ 66 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNF-P---IDKLVLLASDRSAGR----KVTFK------GKELEVNEAKIESFEGIDIAL 66 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCC-C---hhhEEEEeccccCCC----eeeeC------CeeEEEEeCChHHhcCCCEEE
Confidence 699999999999999998876432 1 133332222221111 11111 112333333456779999999
Q ss_pred EeCC
Q 013619 178 LIGA 181 (439)
Q Consensus 178 itag 181 (439)
++.|
T Consensus 67 ~a~g 70 (339)
T TIGR01296 67 FSAG 70 (339)
T ss_pred ECCC
Confidence 9865
No 392
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=91.12 E-value=3.1 Score=39.89 Aligned_cols=26 Identities=4% Similarity=0.179 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
..++.|+||+|.||.+++..|+..+.
T Consensus 7 ~k~~lItGa~~gIG~~ia~~l~~~G~ 32 (261)
T PRK08936 7 GKVVVITGGSTGLGRAMAVRFGKEKA 32 (261)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 45899999999999999999998763
No 393
>PRK08628 short chain dehydrogenase; Provisional
Probab=91.12 E-value=4 Score=38.88 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=22.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
.+|.|+||+|.+|.+++..|+..+.
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~ 32 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGA 32 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCC
Confidence 4899999999999999999998764
No 394
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.09 E-value=0.76 Score=47.05 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=26.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEec
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLL 133 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~ 133 (439)
..||.|||+ |.+|+.++..|+..++ + .|.|.+.
T Consensus 24 ~~~VlVvG~-GglGs~va~~La~aGv-g---~i~lvD~ 56 (339)
T PRK07688 24 EKHVLIIGA-GALGTANAEMLVRAGV-G---KVTIVDR 56 (339)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC-C---eEEEEeC
Confidence 459999996 9999999999999886 2 3666543
No 395
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=91.08 E-value=2.4 Score=42.23 Aligned_cols=106 Identities=18% Similarity=0.103 Sum_probs=54.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchh---hHHHHHHHHhcccCC---CC-ccEEEecCc----
Q 013619 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ---ALEGVAMELEDSLFP---LL-REVKIGINP---- 166 (439)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e---~l~g~a~DL~~~~~~---~~-~~v~i~~~~---- 166 (439)
+|.|+||+|.+|.+++..|+..+-.. .|.. + .++.+ ..+.+...+...... .. .++.+...+
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~---~V~~--l--~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 73 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQA---KVIC--L--VRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEP 73 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCC---EEEE--E--EccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcc
Confidence 58899999999999999999765211 1322 1 22222 111111111111000 00 123322111
Q ss_pred ---------ccccCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhh
Q 013619 167 ---------YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (439)
Q Consensus 167 ---------~eal~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~ 211 (439)
.+..+++|+||.+++... ......++...|..-...+.+...+.
T Consensus 74 ~~gl~~~~~~~~~~~~d~vih~a~~~~-~~~~~~~~~~~nv~g~~~ll~~a~~~ 126 (367)
T TIGR01746 74 RLGLSDAEWERLAENVDTIVHNGALVN-WVYPYSELRAANVLGTREVLRLAASG 126 (367)
T ss_pred cCCcCHHHHHHHHhhCCEEEeCCcEec-cCCcHHHHhhhhhHHHHHHHHHHhhC
Confidence 223578999999887532 12233345556766666666666654
No 396
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=91.08 E-value=1.9 Score=42.18 Aligned_cols=109 Identities=15% Similarity=0.071 Sum_probs=58.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEE-ec--Ccc----ccc
Q 013619 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NPY----ELF 170 (439)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i-~~--~~~----eal 170 (439)
||.|+||+|.||..++..|+..+. .+.+. +...........++... . .+.. .. .+. +.+
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~-----~V~~~----~~~~~~~~~~~~~~~~~--~---~~~~~~~D~~~~~~~~~~~ 66 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH-----EVVVL----DNLSNGSPEALKRGERI--T---RVTFVEGDLRDRELLDRLF 66 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC-----eEEEE----eCCCccchhhhhhhccc--c---ceEEEECCCCCHHHHHHHH
Confidence 689999999999999999988652 24331 22111101011111110 0 1111 11 111 223
Q ss_pred --CCCcEEEEeCCcCCCC--CCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeC
Q 013619 171 --EDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (439)
Q Consensus 171 --~dADiVIitag~~~kp--g~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvt 222 (439)
.+.|+||.++|....+ .....+.+..|+.....+.+.+.+. +.. .++.++
T Consensus 67 ~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~-~~v~~s 120 (328)
T TIGR01179 67 EEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQT-GVK-KFIFSS 120 (328)
T ss_pred HhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhc-CCC-EEEEec
Confidence 2689999998864322 1223345677888778888877764 333 344444
No 397
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=91.04 E-value=0.9 Score=44.28 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
..||.|||+ |.+|+.++..|+..++
T Consensus 32 ~~~VliiG~-GglGs~va~~La~~Gv 56 (245)
T PRK05690 32 AARVLVVGL-GGLGCAASQYLAAAGV 56 (245)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCC
Confidence 469999995 9999999999999885
No 398
>PRK07060 short chain dehydrogenase; Provisional
Probab=91.02 E-value=1.6 Score=41.16 Aligned_cols=41 Identities=22% Similarity=0.256 Sum_probs=30.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHH
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV 145 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~ 145 (439)
.+++.|+||+|.+|.+++..|+..+. ++.+ .+++.++++..
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g~-----~V~~----~~r~~~~~~~~ 49 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRGA-----RVVA----AARNAAALDRL 49 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHH
Confidence 36899999999999999999998763 2444 35555555433
No 399
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.94 E-value=0.8 Score=48.11 Aligned_cols=111 Identities=16% Similarity=0.149 Sum_probs=60.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccch-hhHHHHHHHHhcccCCCCccEEEecCcccccCCCc
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL-QALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~-e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (439)
.++|.|+|+ |.+|..+|..|+..+. .+.+ +|.+. +.+.....+|... .-++.......+...++|
T Consensus 5 ~k~v~iiG~-g~~G~~~A~~l~~~G~-----~V~~----~d~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~d 70 (450)
T PRK14106 5 GKKVLVVGA-GVSGLALAKFLKKLGA-----KVIL----TDEKEEDQLKEALEELGEL----GIELVLGEYPEEFLEGVD 70 (450)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC-----EEEE----EeCCchHHHHHHHHHHHhc----CCEEEeCCcchhHhhcCC
Confidence 468999996 8899999999998773 2555 34432 3333333344311 111222222234567899
Q ss_pred EEEEeCCcCCCCCC-chhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 013619 175 WALLIGAKPRGPGM-ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (439)
Q Consensus 175 iVIitag~~~kpg~-~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPv 225 (439)
+||.++|.+. .- .....-..+++++...+...... + ..+|-+|--+
T Consensus 71 ~vv~~~g~~~--~~~~~~~a~~~~i~~~~~~~~~~~~~--~-~~vI~ITGS~ 117 (450)
T PRK14106 71 LVVVSPGVPL--DSPPVVQAHKKGIEVIGEVELAYRFS--K-APIVAITGTN 117 (450)
T ss_pred EEEECCCCCC--CCHHHHHHHHCCCcEEeHHHHHHhhc--C-CCEEEEeCCC
Confidence 9999888642 21 11112234566666555433332 2 3455555443
No 400
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=90.92 E-value=1.2 Score=44.71 Aligned_cols=76 Identities=20% Similarity=0.163 Sum_probs=45.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEe-cccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCC
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL-LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l-~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (439)
+.+|++-+|.+.||+.++...-+.-|+ .+.+.- -+++++++- -..|..+... ....++++.|.+++++||
T Consensus 152 ~g~k~a~vGDgNNv~nSl~~~~a~~G~-----dv~ia~Pk~~~p~~~~-~~~a~~~a~~---~g~~i~~t~d~~eAv~gA 222 (310)
T COG0078 152 KGLKLAYVGDGNNVANSLLLAAAKLGM-----DVRIATPKGYEPDPEV-VEKAKENAKE---SGGKITLTEDPEEAVKGA 222 (310)
T ss_pred cCcEEEEEcCcchHHHHHHHHHHHhCC-----eEEEECCCcCCcCHHH-HHHHHHHHHh---cCCeEEEecCHHHHhCCC
Confidence 457999999867777776665554442 133311 111232222 2244443322 234789999999999999
Q ss_pred cEEEEe
Q 013619 174 EWALLI 179 (439)
Q Consensus 174 DiVIit 179 (439)
|+|..-
T Consensus 223 DvvyTD 228 (310)
T COG0078 223 DVVYTD 228 (310)
T ss_pred CEEEec
Confidence 998864
No 401
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=90.91 E-value=1.7 Score=44.50 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCCCCCCceEEEecccccchhhHHH-HHHHHhcccCCCCccEEEecCcccccCCCcEEEEe
Q 013619 109 ANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG-VAMELEDSLFPLLREVKIGINPYELFEDAEWALLI 179 (439)
Q Consensus 109 G~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g-~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVIit 179 (439)
|..+|..|+..+. +|.+ .|++.+.++. ....+.+. .+++.+++.+++++||+||++
T Consensus 32 G~~MA~~La~aG~-----~V~v----~Dr~~~~l~~~~~~~l~~~------Gi~~asd~~eaa~~ADvVIla 88 (342)
T PRK12557 32 GSRMAIEFAEAGH-----DVVL----AEPNRSILSEELWKKVEDA------GVKVVSDDAEAAKHGEIHILF 88 (342)
T ss_pred HHHHHHHHHhCCC-----eEEE----EECCHHHhhHHHHHHHHHC------CCEEeCCHHHHHhCCCEEEEE
Confidence 6778888887652 3655 3565554322 11112211 245566777889999999998
No 402
>PRK08264 short chain dehydrogenase; Validated
Probab=90.87 E-value=2.4 Score=39.89 Aligned_cols=27 Identities=26% Similarity=0.196 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
+..+|.|+||+|.+|.+++..|+..+.
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~ 31 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGA 31 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCc
Confidence 345899999999999999999998763
No 403
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=90.84 E-value=0.93 Score=45.33 Aligned_cols=73 Identities=15% Similarity=0.016 Sum_probs=46.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccch---hhHHHHHHHHhcccCCCCccEEEec-Cc----c
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL---QALEGVAMELEDSLFPLLREVKIGI-NP----Y 167 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~---e~l~g~a~DL~~~~~~~~~~v~i~~-~~----~ 167 (439)
..++.|+|| |..+.++++.|+..+.. .|.+ .+++. ++++.++.++.+.. . ..+.+.. ++ .
T Consensus 124 ~k~vlvlGa-GGaarAi~~~l~~~g~~----~i~i----~nRt~~~~~ka~~la~~~~~~~-~--~~~~~~~~~~~~~l~ 191 (288)
T PRK12749 124 GKTMVLLGA-GGASTAIGAQGAIEGLK----EIKL----FNRRDEFFDKALAFAQRVNENT-D--CVVTVTDLADQQAFA 191 (288)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCC----EEEE----EeCCccHHHHHHHHHHHhhhcc-C--ceEEEechhhhhhhh
Confidence 358999996 98899999999876652 3666 46663 47777776664321 1 1122221 11 2
Q ss_pred cccCCCcEEEEeC
Q 013619 168 ELFEDAEWALLIG 180 (439)
Q Consensus 168 eal~dADiVIita 180 (439)
+++.++|+||.+-
T Consensus 192 ~~~~~aDivINaT 204 (288)
T PRK12749 192 EALASADILTNGT 204 (288)
T ss_pred hhcccCCEEEECC
Confidence 3567899999963
No 404
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=90.84 E-value=0.38 Score=48.65 Aligned_cols=91 Identities=14% Similarity=0.178 Sum_probs=53.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (439)
..+|+||| .|+||..++..|...+. .+.. .|+..+...+ .. . + .-..+..+.+++||+
T Consensus 136 g~tvgIvG-~G~IG~~vA~~l~afG~-----~V~~----~~~~~~~~~~----~~-~---~----~~~~~l~e~l~~aDv 193 (312)
T PRK15469 136 DFTIGILG-AGVLGSKVAQSLQTWGF-----PLRC----WSRSRKSWPG----VQ-S---F----AGREELSAFLSQTRV 193 (312)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCC-----EEEE----EeCCCCCCCC----ce-e---e----cccccHHHHHhcCCE
Confidence 36999999 59999999999886543 2433 2433222110 00 0 0 011245788999999
Q ss_pred EEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeC
Q 013619 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (439)
Q Consensus 176 VIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvt 222 (439)
|+++... ..+ |..++. .+.+.+. .+++++|+++
T Consensus 194 vv~~lPl----t~~-------T~~li~--~~~l~~m-k~ga~lIN~a 226 (312)
T PRK15469 194 LINLLPN----TPE-------TVGIIN--QQLLEQL-PDGAYLLNLA 226 (312)
T ss_pred EEECCCC----CHH-------HHHHhH--HHHHhcC-CCCcEEEECC
Confidence 9997321 111 223332 2345555 6889999998
No 405
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=90.82 E-value=0.89 Score=44.23 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
..||.|+|+ |.+|+.++..|+..++
T Consensus 24 ~~~VlvvG~-GglGs~va~~La~~Gv 48 (240)
T TIGR02355 24 ASRVLIVGL-GGLGCAASQYLAAAGV 48 (240)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCC
Confidence 469999995 9999999999999885
No 406
>PRK08278 short chain dehydrogenase; Provisional
Probab=90.76 E-value=4.5 Score=39.33 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~ 120 (439)
..++.|+||+|.+|.+++..|+..+
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G 30 (273)
T PRK08278 6 GKTLFITGASRGIGLAIALRAARDG 30 (273)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC
Confidence 3589999999999999999999876
No 407
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=90.59 E-value=1.6 Score=44.34 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
++||+|+||+|.+|..+...|...+.
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~ 27 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSD 27 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCC
Confidence 57999999999999999998887763
No 408
>PRK07775 short chain dehydrogenase; Provisional
Probab=90.59 E-value=3 Score=40.52 Aligned_cols=26 Identities=27% Similarity=0.215 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
++.+.|+||+|.+|.+++..|+..+.
T Consensus 10 ~~~vlVtGa~g~iG~~la~~L~~~G~ 35 (274)
T PRK07775 10 RRPALVAGASSGIGAATAIELAAAGF 35 (274)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 35799999999999999999998763
No 409
>PRK07574 formate dehydrogenase; Provisional
Probab=90.52 E-value=0.9 Score=47.39 Aligned_cols=101 Identities=18% Similarity=0.253 Sum_probs=57.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (439)
++|+||| .|+||..+|..|...+. .|.. .|+.....+ ...++ .++...+..+.+++||+|
T Consensus 193 ktVGIvG-~G~IG~~vA~~l~~fG~-----~V~~----~dr~~~~~~-~~~~~---------g~~~~~~l~ell~~aDvV 252 (385)
T PRK07574 193 MTVGIVG-AGRIGLAVLRRLKPFDV-----KLHY----TDRHRLPEE-VEQEL---------GLTYHVSFDSLVSVCDVV 252 (385)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-----EEEE----ECCCCCchh-hHhhc---------CceecCCHHHHhhcCCEE
Confidence 6899999 59999999999876443 2333 354421111 11111 122234567889999999
Q ss_pred EEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeC--CchhHHHHH
Q 013619 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG--NPCNTNALI 231 (439)
Q Consensus 177 Iitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvt--NPvd~~t~i 231 (439)
++.... ..+ +..++. .+.+... .+++++|+++ ..+|.-+.+
T Consensus 253 ~l~lPl----t~~-------T~~li~--~~~l~~m-k~ga~lIN~aRG~iVDe~AL~ 295 (385)
T PRK07574 253 TIHCPL----HPE-------TEHLFD--ADVLSRM-KRGSYLVNTARGKIVDRDAVV 295 (385)
T ss_pred EEcCCC----CHH-------HHHHhC--HHHHhcC-CCCcEEEECCCCchhhHHHHH
Confidence 997321 111 112221 2344444 5789999997 445555444
No 410
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=90.49 E-value=0.86 Score=45.20 Aligned_cols=60 Identities=17% Similarity=0.196 Sum_probs=40.8
Q ss_pred EEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEEEEeC
Q 013619 101 VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIG 180 (439)
Q Consensus 101 IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVIita 180 (439)
||| .|.+|..++..|+..+. ++.+ .|++.++++.. ... ......+..+++++||+||++.
T Consensus 1 ~IG-lG~mG~~mA~~L~~~G~-----~V~v----~dr~~~~~~~l----~~~------g~~~~~s~~~~~~~advVil~v 60 (288)
T TIGR01692 1 FIG-LGNMGGPMAANLLKAGH-----PVRV----FDLFPDAVEEA----VAA------GAQAAASPAEAAEGADRVITML 60 (288)
T ss_pred CCc-ccHhHHHHHHHHHhCCC-----eEEE----EeCCHHHHHHH----HHc------CCeecCCHHHHHhcCCEEEEeC
Confidence 589 59999999999997662 2555 36666665533 211 1233445667899999999984
No 411
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=90.42 E-value=0.9 Score=45.39 Aligned_cols=72 Identities=21% Similarity=0.212 Sum_probs=49.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEE-ecCcccccCCCc
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GINPYELFEDAE 174 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i-~~~~~eal~dAD 174 (439)
..+|.|+|| |..+.++++.|++.+.. +|.+ .+++.++++.++..+.+.. . .+.. ...+.+...++|
T Consensus 126 ~~~vlilGA-GGAarAv~~aL~~~g~~----~i~V----~NRt~~ra~~La~~~~~~~-~---~~~~~~~~~~~~~~~~d 192 (283)
T COG0169 126 GKRVLILGA-GGAARAVAFALAEAGAK----RITV----VNRTRERAEELADLFGELG-A---AVEAAALADLEGLEEAD 192 (283)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHcCCC----EEEE----EeCCHHHHHHHHHHhhhcc-c---ccccccccccccccccC
Confidence 468999996 99999999999998863 3766 5888888887777665432 1 1111 122333333799
Q ss_pred EEEEeC
Q 013619 175 WALLIG 180 (439)
Q Consensus 175 iVIita 180 (439)
+||.+-
T Consensus 193 liINaT 198 (283)
T COG0169 193 LLINAT 198 (283)
T ss_pred EEEECC
Confidence 999973
No 412
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=90.40 E-value=0.99 Score=42.59 Aligned_cols=67 Identities=18% Similarity=0.218 Sum_probs=42.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCccccc-CCC
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-EDA 173 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal-~dA 173 (439)
+.++|+|+|. |++|.+++..|...+. +|.+ +|++.++++..+.++. . ..+. ..+.+ .+|
T Consensus 27 ~gk~v~I~G~-G~vG~~~A~~L~~~G~-----~Vvv----~D~~~~~~~~~~~~~g-~-------~~v~--~~~l~~~~~ 86 (200)
T cd01075 27 EGKTVAVQGL-GKVGYKLAEHLLEEGA-----KLIV----ADINEEAVARAAELFG-A-------TVVA--PEEIYSVDA 86 (200)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHcC-C-------EEEc--chhhccccC
Confidence 3468999995 9999999999988663 2444 4666666654443321 1 1111 12233 379
Q ss_pred cEEEEeCC
Q 013619 174 EWALLIGA 181 (439)
Q Consensus 174 DiVIitag 181 (439)
|+++.++.
T Consensus 87 Dv~vp~A~ 94 (200)
T cd01075 87 DVFAPCAL 94 (200)
T ss_pred CEEEeccc
Confidence 99987643
No 413
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=90.32 E-value=0.93 Score=46.92 Aligned_cols=79 Identities=16% Similarity=0.115 Sum_probs=46.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEeccc---------------ccchhhHHHHHHHHhcccCCCCcc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS---------------ERSLQALEGVAMELEDSLFPLLRE 159 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~---------------d~~~e~l~g~a~DL~~~~~~~~~~ 159 (439)
+..||.|+|+ |.+|+.++..|+..++- .|.|.+.|. |+...+++..+..|.... +.. +
T Consensus 134 ~~~~VlvvG~-GG~Gs~ia~~La~~Gvg----~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~v-~ 206 (376)
T PRK08762 134 LEARVLLIGA-GGLGSPAALYLAAAGVG----TLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN-PDV-Q 206 (376)
T ss_pred hcCcEEEECC-CHHHHHHHHHHHHcCCC----eEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC-CCC-E
Confidence 3458999995 99999999999998862 366644331 122345555555554332 221 2
Q ss_pred EEEecC------cccccCCCcEEEEeC
Q 013619 160 VKIGIN------PYELFEDAEWALLIG 180 (439)
Q Consensus 160 v~i~~~------~~eal~dADiVIita 180 (439)
+..... ..+.++++|+||.+.
T Consensus 207 v~~~~~~~~~~~~~~~~~~~D~Vv~~~ 233 (376)
T PRK08762 207 VEAVQERVTSDNVEALLQDVDVVVDGA 233 (376)
T ss_pred EEEEeccCChHHHHHHHhCCCEEEECC
Confidence 222111 123478999999874
No 414
>PRK08605 D-lactate dehydrogenase; Validated
Probab=90.28 E-value=0.67 Score=47.23 Aligned_cols=63 Identities=22% Similarity=0.141 Sum_probs=39.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (439)
.+||+|||+ |.||..++..|+.+ ++ ..|.. .|++.... .... +....+..+.+++||+
T Consensus 146 g~~VgIIG~-G~IG~~vA~~L~~~--~g--~~V~~----~d~~~~~~------~~~~-------~~~~~~l~ell~~aDv 203 (332)
T PRK08605 146 DLKVAVIGT-GRIGLAVAKIFAKG--YG--SDVVA----YDPFPNAK------AATY-------VDYKDTIEEAVEGADI 203 (332)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhc--CC--CEEEE----ECCCccHh------HHhh-------ccccCCHHHHHHhCCE
Confidence 469999995 99999999998542 22 12433 34432221 0101 1122356788999999
Q ss_pred EEEeC
Q 013619 176 ALLIG 180 (439)
Q Consensus 176 VIita 180 (439)
|+++.
T Consensus 204 Ivl~l 208 (332)
T PRK08605 204 VTLHM 208 (332)
T ss_pred EEEeC
Confidence 99974
No 415
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=90.17 E-value=1.1 Score=44.36 Aligned_cols=35 Identities=23% Similarity=0.183 Sum_probs=27.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG 134 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~ 134 (439)
+..+|.|+|+ |.||+.++..|+..++- .|.|.+.|
T Consensus 29 ~~s~VlVvG~-GGVGs~vae~Lar~GVg----~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGI-GGVGSWAAEALARTGIG----AITLIDMD 63 (268)
T ss_pred cCCCEEEECc-CHHHHHHHHHHHHcCCC----EEEEEeCC
Confidence 3459999995 99999999999998863 26664443
No 416
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=89.95 E-value=1.1 Score=45.07 Aligned_cols=67 Identities=18% Similarity=0.020 Sum_probs=42.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (439)
..||.|+|+ |.+|..++..|...+. .|.+ .|++.++.+ .+.++. . +.....+..+.++++|+
T Consensus 152 g~kvlViG~-G~iG~~~a~~L~~~Ga-----~V~v----~~r~~~~~~-~~~~~G-----~--~~~~~~~l~~~l~~aDi 213 (296)
T PRK08306 152 GSNVLVLGF-GRTGMTLARTLKALGA-----NVTV----GARKSAHLA-RITEMG-----L--SPFHLSELAEEVGKIDI 213 (296)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCC-----EEEE----EECCHHHHH-HHHHcC-----C--eeecHHHHHHHhCCCCE
Confidence 579999995 9999999999987652 2555 366544432 333221 1 11111234577899999
Q ss_pred EEEeC
Q 013619 176 ALLIG 180 (439)
Q Consensus 176 VIita 180 (439)
||.+.
T Consensus 214 VI~t~ 218 (296)
T PRK08306 214 IFNTI 218 (296)
T ss_pred EEECC
Confidence 99984
No 417
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=89.93 E-value=0.6 Score=47.85 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=21.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
+||+|+||+|.+|..++..|...+.
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~ 25 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPE 25 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCC
Confidence 6999999999999999999886543
No 418
>PRK08226 short chain dehydrogenase; Provisional
Probab=89.92 E-value=3.5 Score=39.39 Aligned_cols=26 Identities=15% Similarity=0.048 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
..++.|+||+|.||.+++..|+..+.
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~G~ 31 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARHGA 31 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 35899999999999999999998763
No 419
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=89.91 E-value=0.26 Score=48.36 Aligned_cols=134 Identities=11% Similarity=0.077 Sum_probs=78.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCC----CCC--CceEEEecccc--cchhh--HHHHHHHHhcccCCCCccEEEecCc
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVL----GPD--QPIALKLLGSE--RSLQA--LEGVAMELEDSLFPLLREVKIGINP 166 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~----~~~--~~I~L~l~~~d--~~~e~--l~g~a~DL~~~~~~~~~~v~i~~~~ 166 (439)
.||.|.|| |..|..++..|+....- .++ +.|.+ +|.. +..++ +...-..+.+ +.++-....+.
T Consensus 26 ~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~--vD~~Gll~~~r~~l~~~~~~~~~----~~~~~~~~~~L 98 (254)
T cd00762 26 HKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWX--VDRKGLLVKNRKETCPNEYHLAR----FANPERESGDL 98 (254)
T ss_pred cEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEE--ECCCCeEeCCCCccCHHHHHHHH----HcCcccccCCH
Confidence 69999996 99999999888765431 110 23544 2222 11111 1111112111 11111123568
Q ss_pred ccccC--CCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchh---HHHHHHHHHCCCCCC
Q 013619 167 YELFE--DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN---TNALICLKNAPSIPA 241 (439)
Q Consensus 167 ~eal~--dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd---~~t~i~~k~s~~~p~ 241 (439)
.++++ ++|++|=+.+.| |- +-+++.+.|.++ +++.+|+-.+||.. +...-+++.+.+ +
T Consensus 99 ~eav~~~kptvlIG~S~~~---g~-----------ft~evv~~Ma~~-~~~PIIFaLSNPt~~aE~tpe~a~~~t~G--~ 161 (254)
T cd00762 99 EDAVEAAKPDFLIGVSRVG---GA-----------FTPEVIRAXAEI-NERPVIFALSNPTSKAECTAEEAYTATEG--R 161 (254)
T ss_pred HHHHHhhCCCEEEEeCCCC---CC-----------CCHHHHHHHhhc-CCCCEEEECCCcCCccccCHHHHHhhcCC--C
Confidence 89999 999988665543 21 224556667776 68899999999974 556667776522 3
Q ss_pred CceeccccchHHH
Q 013619 242 KNFHALTRLDENR 254 (439)
Q Consensus 242 kvig~gt~LDs~R 254 (439)
.+|++|+.-..+.
T Consensus 162 ai~AtGspf~pv~ 174 (254)
T cd00762 162 AIFASGSPFHPVE 174 (254)
T ss_pred EEEEECCCCCCcc
Confidence 5788888755443
No 420
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=89.82 E-value=4.9 Score=37.92 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=21.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcC
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGE 120 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~ 120 (439)
+.+.|+||+|.||.+++..|+..+
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G 27 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDG 27 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcC
Confidence 468999999999999999999876
No 421
>PRK05693 short chain dehydrogenase; Provisional
Probab=89.61 E-value=3.7 Score=39.74 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~ 120 (439)
|+++.|+||+|.+|.+++..|+..+
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G 25 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAG 25 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCC
Confidence 3579999999999999999998765
No 422
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=89.52 E-value=5.5 Score=37.27 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCC
Q 013619 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
.+.|+||+|.+|.+++..|+..+.
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~ 25 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGY 25 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCC
Confidence 578999999999999999997663
No 423
>PRK07831 short chain dehydrogenase; Provisional
Probab=89.52 E-value=5.5 Score=38.18 Aligned_cols=46 Identities=22% Similarity=0.150 Sum_probs=33.2
Q ss_pred CCEEEEEcCCC-chHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHh
Q 013619 96 MVNIAVSGAAG-MIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (439)
Q Consensus 96 ~~KI~IIGA~G-~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~ 150 (439)
..++.|+||+| .||.+++..|+..+. .|.+ .+++.++++....++.
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~-----~V~~----~~~~~~~~~~~~~~~~ 63 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGA-----RVVI----SDIHERRLGETADELA 63 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 45899999877 699999999998763 2444 3566666665555554
No 424
>PRK06114 short chain dehydrogenase; Provisional
Probab=89.47 E-value=3.5 Score=39.40 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
..++.|+||+|.||.+++..|+..+.
T Consensus 8 ~k~~lVtG~s~gIG~~ia~~l~~~G~ 33 (254)
T PRK06114 8 GQVAFVTGAGSGIGQRIAIGLAQAGA 33 (254)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 35899999999999999999998763
No 425
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.44 E-value=0.89 Score=44.05 Aligned_cols=33 Identities=24% Similarity=0.200 Sum_probs=26.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEec
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLL 133 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~ 133 (439)
..||.|+|+ |.+|+.++..|+..++- .|.|.+.
T Consensus 11 ~~~VlVvG~-GGvGs~va~~Lar~GVg----~i~LvD~ 43 (231)
T cd00755 11 NAHVAVVGL-GGVGSWAAEALARSGVG----KLTLIDF 43 (231)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCCC----EEEEECC
Confidence 459999995 99999999999998862 3666443
No 426
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=89.29 E-value=1.1 Score=46.01 Aligned_cols=78 Identities=18% Similarity=0.186 Sum_probs=43.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHh-c--ccCC-----CC-ccEEEecCc
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE-D--SLFP-----LL-REVKIGINP 166 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~-~--~~~~-----~~-~~v~i~~~~ 166 (439)
|+||+|+|+ |.||..++..+...+-+ +|+- + .|.+.+.....+.... + ...+ +. ..+.+..+.
T Consensus 1 ~ikVaI~G~-GrIGr~va~al~~~~d~----eLva--v-~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~ 72 (341)
T PRK04207 1 MIKVGVNGY-GTIGKRVADAVAAQPDM----ELVG--V-AKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTI 72 (341)
T ss_pred CeEEEEECC-CHHHHHHHHHHhcCCCc----EEEE--E-ECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCCh
Confidence 579999996 99999999887764322 2321 1 2443333332332110 0 0000 11 134555555
Q ss_pred ccccCCCcEEEEeCC
Q 013619 167 YELFEDAEWALLIGA 181 (439)
Q Consensus 167 ~eal~dADiVIitag 181 (439)
.+.+.++|+||.+.+
T Consensus 73 ~el~~~vDVVIdaT~ 87 (341)
T PRK04207 73 EDLLEKADIVVDATP 87 (341)
T ss_pred hHhhccCCEEEECCC
Confidence 566689999999754
No 427
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.26 E-value=2.2 Score=43.10 Aligned_cols=55 Identities=9% Similarity=0.012 Sum_probs=32.0
Q ss_pred cEEEecC--cccccCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHH
Q 013619 159 EVKIGIN--PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (439)
Q Consensus 159 ~v~i~~~--~~eal~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~t 229 (439)
+++.+++ .++++++||+||-+.- + +..+=+.+-..+.+.+.|++++ +||-.....
T Consensus 64 ~i~~~~~~~~~~a~~~aD~ViEav~-------E-------~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~ 120 (314)
T PRK08269 64 RIAVVARDGAADALADADLVFEAVP-------E-------VLDAKREALRWLGRHVDADAII--ASTTSTFLV 120 (314)
T ss_pred CeEeecCcchHHHhccCCEEEECCc-------C-------CHHHHHHHHHHHHhhCCCCcEE--EEccccCCH
Confidence 5666654 5688999999998731 1 1222223333355665677766 677654333
No 428
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=89.25 E-value=1 Score=46.74 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
..||.|||+ |.+|+.++..|+..++
T Consensus 41 ~~~VliiG~-GglG~~v~~~La~~Gv 65 (370)
T PRK05600 41 NARVLVIGA-GGLGCPAMQSLASAGV 65 (370)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC
Confidence 459999995 9999999999999886
No 429
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=89.23 E-value=1.3 Score=41.94 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=41.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEE--ecCcccccCCC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI--GINPYELFEDA 173 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i--~~~~~eal~dA 173 (439)
..||.|||+ |.+|..-+..|+..+- .|++ ++-+.. +.++ ++.+. .+++. ..-..+++.++
T Consensus 9 gk~vlVvGg-G~va~rk~~~Ll~~ga-----~VtV--vsp~~~-~~l~----~l~~~-----~~i~~~~~~~~~~dl~~~ 70 (205)
T TIGR01470 9 GRAVLVVGG-GDVALRKARLLLKAGA-----QLRV--IAEELE-SELT----LLAEQ-----GGITWLARCFDADILEGA 70 (205)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCC-----EEEE--EcCCCC-HHHH----HHHHc-----CCEEEEeCCCCHHHhCCc
Confidence 359999996 9999999999987662 2555 222222 2222 22211 12333 22235679999
Q ss_pred cEEEEeCC
Q 013619 174 EWALLIGA 181 (439)
Q Consensus 174 DiVIitag 181 (439)
|+||.+-+
T Consensus 71 ~lVi~at~ 78 (205)
T TIGR01470 71 FLVIAATD 78 (205)
T ss_pred EEEEECCC
Confidence 99998744
No 430
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=89.20 E-value=3 Score=41.11 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~ 120 (439)
||||+|||+ |++|..++..|...+
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~ 24 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDP 24 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCC
Confidence 579999996 999999999887654
No 431
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=89.19 E-value=0.57 Score=47.11 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=72.4
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCc---cEEEecCc------ccc
Q 013619 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR---EVKIGINP------YEL 169 (439)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~---~v~i~~~~------~ea 169 (439)
.+|.||+..||.++|..|+.+++ .++| +.+++++|+..+.|+++.- ..-. .+..+.++ .+.
T Consensus 52 AVVTGaTDGIGKayA~eLAkrG~-----nvvL----IsRt~~KL~~v~kEI~~~~-~vev~~i~~Dft~~~~~ye~i~~~ 121 (312)
T KOG1014|consen 52 AVVTGATDGIGKAYARELAKRGF-----NVVL----ISRTQEKLEAVAKEIEEKY-KVEVRIIAIDFTKGDEVYEKLLEK 121 (312)
T ss_pred EEEECCCCcchHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHHHh-CcEEEEEEEecCCCchhHHHHHHH
Confidence 57899999999999999999885 2566 6899999999999998774 2111 12223333 356
Q ss_pred cCCCcEEEE--eCCcCC-CCC-------CchhhhHHHH----HHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 013619 170 FEDAEWALL--IGAKPR-GPG-------MERAGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (439)
Q Consensus 170 l~dADiVIi--tag~~~-kpg-------~~r~~ll~~N----~~ii~~i~~~i~~~a~p~aivIvvtNPv 225 (439)
+.+-|+=|+ .+|... -|. .+-.+.+..| ....+-+-+.|.+ ...|.|++++.-.
T Consensus 122 l~~~~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~--r~~G~IvnigS~a 189 (312)
T KOG1014|consen 122 LAGLDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVE--RKKGIIVNIGSFA 189 (312)
T ss_pred hcCCceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhc--CCCceEEEecccc
Confidence 667776554 456432 121 1111122222 2344455577777 4788889887544
No 432
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=89.17 E-value=2 Score=42.50 Aligned_cols=98 Identities=18% Similarity=0.154 Sum_probs=61.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCccc-ccCCCcE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE-LFEDAEW 175 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~e-al~dADi 175 (439)
+||+|||. |.+|..++..|..+... .+.|.-+ .+++.++.+..+ +. ..+..+..+ .....|+
T Consensus 3 ~rvgiIG~-GaIG~~va~~l~~~~~~----~~~l~~V-~~~~~~~~~~~~----~~-------~~~~~~l~~ll~~~~Dl 65 (267)
T PRK13301 3 HRIAFIGL-GAIASDVAAGLLADAAQ----PCQLAAL-TRNAADLPPALA----GR-------VALLDGLPGLLAWRPDL 65 (267)
T ss_pred eEEEEECc-cHHHHHHHHHHhcCCCC----ceEEEEE-ecCCHHHHHHhh----cc-------CcccCCHHHHhhcCCCE
Confidence 69999995 99999999998765432 1333323 455554544332 21 112333333 2478999
Q ss_pred EEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHH
Q 013619 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (439)
Q Consensus 176 VIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~ 228 (439)
||=+|+ .+.+++++..+=+. +.+-+++-++==.|.-
T Consensus 66 VVE~A~----------------~~av~e~~~~iL~~-g~dlvv~SvGALaD~~ 101 (267)
T PRK13301 66 VVEAAG----------------QQAIAEHAEGCLTA-GLDMIICSAGALADDA 101 (267)
T ss_pred EEECCC----------------HHHHHHHHHHHHhc-CCCEEEEChhHhcCHH
Confidence 998877 36788999877774 5666666655555533
No 433
>PRK05854 short chain dehydrogenase; Provisional
Probab=89.12 E-value=6.5 Score=39.25 Aligned_cols=46 Identities=22% Similarity=0.185 Sum_probs=35.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHh
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~ 150 (439)
.+++.|+||+|.||.+++..|+..+. .|.+ ..++.++++....++.
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~G~-----~Vil----~~R~~~~~~~~~~~l~ 59 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAAGA-----EVIL----PVRNRAKGEAAVAAIR 59 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 45899999999999999999998763 2555 3567777776666664
No 434
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=89.00 E-value=1.7 Score=45.75 Aligned_cols=91 Identities=13% Similarity=0.094 Sum_probs=56.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (439)
.-.+|+|+|+ |.||..++..+...+. .+.+ +|+++.+++ .+..+ . + .+ ....++++++|
T Consensus 201 ~GktVvViG~-G~IG~~va~~ak~~Ga-----~ViV----~d~d~~R~~-~A~~~--G---~--~~---~~~~e~v~~aD 259 (413)
T cd00401 201 AGKVAVVAGY-GDVGKGCAQSLRGQGA-----RVIV----TEVDPICAL-QAAME--G---Y--EV---MTMEEAVKEGD 259 (413)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-----EEEE----EECChhhHH-HHHhc--C---C--EE---ccHHHHHcCCC
Confidence 3469999995 9999999998877664 1444 355555554 33322 1 1 11 12346788999
Q ss_pred EEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 013619 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 175 iVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNP 224 (439)
+||.+.|.+ .++..- .+... .+++++++++.+
T Consensus 260 VVI~atG~~---------------~~i~~~--~l~~m-k~GgilvnvG~~ 291 (413)
T cd00401 260 IFVTTTGNK---------------DIITGE--HFEQM-KDGAIVCNIGHF 291 (413)
T ss_pred EEEECCCCH---------------HHHHHH--HHhcC-CCCcEEEEeCCC
Confidence 999876532 222221 23333 578899999975
No 435
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=88.92 E-value=4 Score=35.94 Aligned_cols=115 Identities=15% Similarity=0.088 Sum_probs=67.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccc--hhhHHHHHHHHhcccCCCCccEEEe-cC---------
Q 013619 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS--LQALEGVAMELEDSLFPLLREVKIG-IN--------- 165 (439)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~--~e~l~g~a~DL~~~~~~~~~~v~i~-~~--------- 165 (439)
.+.|+||+|.+|..++..|+..+- ..+.+ +.++ .+.+.....++.... .++... .|
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~----~~v~~----~~r~~~~~~~~~l~~~l~~~~----~~~~~~~~D~~~~~~~~~ 69 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGA----RVVIL----TSRSEDSEGAQELIQELKAPG----AKITFIECDLSDPESIRA 69 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTT----EEEEE----EESSCHHHHHHHHHHHHHHTT----SEEEEEESETTSHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCc----eEEEE----eeecccccccccccccccccc----cccccccccccccccccc
Confidence 578999999999999999998742 12444 3444 455565655555211 122221 11
Q ss_pred ----cccccCCCcEEEEeCCcCCCCC-Cc-----hhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 013619 166 ----PYELFEDAEWALLIGAKPRGPG-ME-----RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (439)
Q Consensus 166 ----~~eal~dADiVIitag~~~kpg-~~-----r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd 226 (439)
-.+....-|++|..+|...... .+ -...+..|..-.....+.+... ..+.|++++....
T Consensus 70 ~~~~~~~~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~--~~g~iv~~sS~~~ 138 (167)
T PF00106_consen 70 LIEEVIKRFGPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQ--GGGKIVNISSIAG 138 (167)
T ss_dssp HHHHHHHHHSSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHH--TTEEEEEEEEGGG
T ss_pred cccccccccccccccccccccccccccccccchhhhhccccccceeeeeeehheec--cccceEEecchhh
Confidence 1134458899999988765211 11 1234555544444444555542 5788888887654
No 436
>PRK12367 short chain dehydrogenase; Provisional
Probab=88.89 E-value=2.4 Score=40.99 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=22.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcC
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGE 120 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~ 120 (439)
.++.|+||+|.+|.+++..|+..+
T Consensus 15 k~~lITGas~gIG~ala~~l~~~G 38 (245)
T PRK12367 15 KRIGITGASGALGKALTKAFRAKG 38 (245)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCC
Confidence 589999999999999999999876
No 437
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=88.84 E-value=1.7 Score=48.70 Aligned_cols=45 Identities=33% Similarity=0.384 Sum_probs=33.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHh
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~ 150 (439)
++|.|+||+|.||.+++..|+..+. .|.+ .+++.+.++....++.
T Consensus 415 kvvLVTGasggIG~aiA~~La~~Ga-----~Vvi----~~r~~~~~~~~~~~l~ 459 (676)
T TIGR02632 415 RVAFVTGGAGGIGRETARRLAAEGA-----HVVL----ADLNLEAAEAVAAEIN 459 (676)
T ss_pred CEEEEeCCCcHHHHHHHHHHHhCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 5799999999999999999998763 2544 3566666665555554
No 438
>PRK08223 hypothetical protein; Validated
Probab=88.83 E-value=1.6 Score=43.78 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=26.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEec
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLL 133 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~ 133 (439)
..||.|||+ |.+|+.++..|+..++- .|.|.|.
T Consensus 27 ~s~VlIvG~-GGLGs~va~~LA~aGVG----~i~lvD~ 59 (287)
T PRK08223 27 NSRVAIAGL-GGVGGIHLLTLARLGIG----KFTIADF 59 (287)
T ss_pred cCCEEEECC-CHHHHHHHHHHHHhCCC----eEEEEeC
Confidence 459999995 99999999999998863 2666443
No 439
>PLN02928 oxidoreductase family protein
Probab=88.83 E-value=0.75 Score=47.24 Aligned_cols=103 Identities=16% Similarity=0.138 Sum_probs=54.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhccc-CCCCccEEEecCcccccCCCcE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-FPLLREVKIGINPYELFEDAEW 175 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~-~~~~~~v~i~~~~~eal~dADi 175 (439)
.+|+||| .|.||..+|..|...+. .|.. .|++..........+.... ..+........+..+.++.||+
T Consensus 160 ktvGIiG-~G~IG~~vA~~l~afG~-----~V~~----~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDi 229 (347)
T PLN02928 160 KTVFILG-YGAIGIELAKRLRPFGV-----KLLA----TRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADI 229 (347)
T ss_pred CEEEEEC-CCHHHHHHHHHHhhCCC-----EEEE----ECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCE
Confidence 6999999 59999999999876443 2433 3544221111000000000 0000000012356789999999
Q ss_pred EEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 176 VIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
|++... ..+ .++ .++. .+.+... .|++++|+++=
T Consensus 230 Vvl~lP--lt~-~T~--------~li~--~~~l~~M-k~ga~lINvaR 263 (347)
T PLN02928 230 VVLCCT--LTK-ETA--------GIVN--DEFLSSM-KKGALLVNIAR 263 (347)
T ss_pred EEECCC--CCh-Hhh--------cccC--HHHHhcC-CCCeEEEECCC
Confidence 999732 111 111 1221 2345554 68899999984
No 440
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=88.82 E-value=0.36 Score=52.48 Aligned_cols=132 Identities=14% Similarity=0.130 Sum_probs=79.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHh-----cCCCCCC--CceEEEecccc--cch---hhHHHHHHHHhcccCCCCccEEEe
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAA-----GEVLGPD--QPIALKLLGSE--RSL---QALEGVAMELEDSLFPLLREVKIG 163 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~-----~~l~~~~--~~I~L~l~~~d--~~~---e~l~g~a~DL~~~~~~~~~~v~i~ 163 (439)
-.||.|.|| |..|..++..|+. .++-.++ +.|.+ +|.+ +.. +.+...-..+.+. ....
T Consensus 321 d~riv~~GA-GsAgigia~ll~~~~~~~~Gls~eeA~~~i~~--vD~~GLi~~~r~~~l~~~k~~fa~~-------~~~~ 390 (581)
T PLN03129 321 DQRILFAGA-GEAGTGIAELIALAMSRQTGISEEEARKRIWL--VDSKGLVTKSRKDSLQPFKKPFAHD-------HEPG 390 (581)
T ss_pred hceEEEECC-CHHHHHHHHHHHHHHHhhcCCChhhhcCcEEE--EcCCCeEeCCCCccChHHHHHHHhh-------cccC
Confidence 369999996 9999999988876 2442111 23444 3322 111 1122222222211 1123
Q ss_pred cCcccccCC--CcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCch---hHHHHHHHHHCCC
Q 013619 164 INPYELFED--AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC---NTNALICLKNAPS 238 (439)
Q Consensus 164 ~~~~eal~d--ADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPv---d~~t~i~~k~s~~ 238 (439)
.+..+++++ +|++|=+.+.+ |- +-.++.+.|.++ +++.+|.-.+||. .+...-+++.+.+
T Consensus 391 ~~L~e~v~~vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~-~~rPIIFaLSNPt~~~E~~pe~a~~~T~G 455 (581)
T PLN03129 391 ASLLEAVKAIKPTVLIGLSGVG---GT-----------FTKEVLEAMASL-NERPIIFALSNPTSKAECTAEEAYTWTGG 455 (581)
T ss_pred CCHHHHHhccCCCEEEEecCCC---CC-----------CCHHHHHHHHhc-CCCCEEEECCCCCCCcCcCHHHHHHhhcC
Confidence 567899999 89887665433 21 123556667776 6889999999996 6667777777633
Q ss_pred CCCCceeccccchHHH
Q 013619 239 IPAKNFHALTRLDENR 254 (439)
Q Consensus 239 ~p~kvig~gt~LDs~R 254 (439)
+-+|.+|+-.+...
T Consensus 456 --~ai~AtGSPf~pv~ 469 (581)
T PLN03129 456 --RAIFASGSPFDPVE 469 (581)
T ss_pred --CEEEEeCCCCCCee
Confidence 24788887666543
No 441
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=88.81 E-value=8 Score=36.24 Aligned_cols=24 Identities=21% Similarity=0.120 Sum_probs=21.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcC
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGE 120 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~ 120 (439)
.+|.|+||+|.+|.+++..|+..+
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g 26 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDG 26 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcC
Confidence 378999999999999999999876
No 442
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=88.75 E-value=0.81 Score=47.60 Aligned_cols=61 Identities=16% Similarity=0.121 Sum_probs=38.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (439)
..++|+||| .|+||+.++..|..-+. .+.. .|+.... . .+.. ...+..+.++.||
T Consensus 115 ~gktvGIIG-~G~IG~~vA~~l~a~G~-----~V~~----~dp~~~~-~------~~~~--------~~~~L~ell~~sD 169 (378)
T PRK15438 115 HDRTVGIVG-VGNVGRRLQARLEALGI-----KTLL----CDPPRAD-R------GDEG--------DFRSLDELVQEAD 169 (378)
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHCCC-----EEEE----ECCcccc-c------cccc--------ccCCHHHHHhhCC
Confidence 346999999 59999999999876553 2433 2432110 0 0000 1134667889999
Q ss_pred EEEEeC
Q 013619 175 WALLIG 180 (439)
Q Consensus 175 iVIita 180 (439)
+|++..
T Consensus 170 iI~lh~ 175 (378)
T PRK15438 170 ILTFHT 175 (378)
T ss_pred EEEEeC
Confidence 999853
No 443
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.63 E-value=3.8 Score=41.13 Aligned_cols=119 Identities=9% Similarity=0.003 Sum_probs=74.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEe---------cC
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG---------IN 165 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~---------~~ 165 (439)
+.-.|-|.||++.+|..+|..++..+- .++|. |+|.+..+..+..+++....+.-.+.++ ..
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~-----~~vl~----Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~ 107 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGA-----KLVLW----DINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKK 107 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCC-----eEEEE----eccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHH
Confidence 345899999999999999999998774 36674 5555555555555553210000011111 12
Q ss_pred cccccCCCcEEEEeCCc-CCCCCC--chh---hhHHHH----HHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 013619 166 PYELFEDAEWALLIGAK-PRGPGM--ERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 166 ~~eal~dADiVIitag~-~~kpg~--~r~---~ll~~N----~~ii~~i~~~i~~~a~p~aivIvvtNP 224 (439)
-.++..+.|++|.-||. +-++.. ++. ..++.| ..+++...+.|.+. .+|-|+.++.=
T Consensus 108 Vk~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~--~~GHIV~IaS~ 174 (300)
T KOG1201|consen 108 VKKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLEN--NNGHIVTIASV 174 (300)
T ss_pred HHHhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhc--CCceEEEehhh
Confidence 45678899999998885 334432 222 123333 45678888999984 78877776543
No 444
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=88.55 E-value=4.9 Score=40.18 Aligned_cols=115 Identities=14% Similarity=0.074 Sum_probs=62.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEE-EecC--cc------
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY------ 167 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~-i~~~--~~------ 167 (439)
..+.|+||++.||.+++..|+..+.. .|.+ ..++.++++..+.++.... ..+. +..| +.
T Consensus 4 k~vlITGas~GIG~aia~~L~~~G~~----~V~l----~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~~~v~~~ 71 (314)
T TIGR01289 4 PTVIITGASSGLGLYAAKALAATGEW----HVIM----ACRDFLKAEQAAKSLGMPK----DSYTIMHLDLGSLDSVRQF 71 (314)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCC----EEEE----EeCCHHHHHHHHHHhcCCC----CeEEEEEcCCCCHHHHHHH
Confidence 37899999999999999999987621 2544 3566666665555553210 1111 1111 11
Q ss_pred -----cccCCCcEEEEeCCcCCC--C--CCch---hhhHHHHH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 168 -----ELFEDAEWALLIGAKPRG--P--GMER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 168 -----eal~dADiVIitag~~~k--p--g~~r---~~ll~~N~----~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
+.+...|++|..+|.... + ..+. ...+..|. -+++.+.+.|.+.....+.||+++.
T Consensus 72 ~~~~~~~~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS 143 (314)
T TIGR01289 72 VQQFRESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGS 143 (314)
T ss_pred HHHHHHhCCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEec
Confidence 123468999998886321 1 1121 22344443 3455566667653111356666654
No 445
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.38 E-value=1.9 Score=45.75 Aligned_cols=98 Identities=16% Similarity=0.125 Sum_probs=55.8
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchh-hHHHHHHHHhcccCCCCccEEEecCccccc
Q 013619 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ-ALEGVAMELEDSLFPLLREVKIGINPYELF 170 (439)
Q Consensus 92 ~~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e-~l~g~a~DL~~~~~~~~~~v~i~~~~~eal 170 (439)
++....||.|+| .|..|.+++..|...+. .+.+ +|.+.. .......+|... . -.+.......+.+
T Consensus 10 ~~~~~~~i~v~G-~G~sG~a~a~~L~~~G~-----~V~~----~D~~~~~~~~~~~~~l~~~--g--i~~~~~~~~~~~~ 75 (458)
T PRK01710 10 KFIKNKKVAVVG-IGVSNIPLIKFLVKLGA-----KVTA----FDKKSEEELGEVSNELKEL--G--VKLVLGENYLDKL 75 (458)
T ss_pred hhhcCCeEEEEc-ccHHHHHHHHHHHHCCC-----EEEE----ECCCCCccchHHHHHHHhC--C--CEEEeCCCChHHh
Confidence 455567999999 59999999999988773 2555 343321 111112223321 1 1222233334667
Q ss_pred CCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHH
Q 013619 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQ 204 (439)
Q Consensus 171 ~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i 204 (439)
.++|+||.+.|.+... .......+.+++|+.++
T Consensus 76 ~~~dlVV~Spgi~~~~-p~~~~a~~~~i~i~s~~ 108 (458)
T PRK01710 76 DGFDVIFKTPSMRIDS-PELVKAKEEGAYITSEM 108 (458)
T ss_pred ccCCEEEECCCCCCCc-hHHHHHHHcCCcEEech
Confidence 8999999998876321 12222334566766554
No 446
>PRK07856 short chain dehydrogenase; Provisional
Probab=88.38 E-value=1.2 Score=42.42 Aligned_cols=26 Identities=15% Similarity=0.080 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
.+++.|+||+|.||.+++..|+..+.
T Consensus 6 ~k~~lItGas~gIG~~la~~l~~~g~ 31 (252)
T PRK07856 6 GRVVLVTGGTRGIGAGIARAFLAAGA 31 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999998663
No 447
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=88.32 E-value=0.78 Score=46.88 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
.|+||+|+||+|..|..|...|...+-
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ 27 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPD 27 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Confidence 368999999999999999999988763
No 448
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=88.24 E-value=1.2 Score=46.46 Aligned_cols=60 Identities=17% Similarity=0.125 Sum_probs=38.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (439)
..+|+||| .|+||..++..+...+. .+.. +|+.....+ ... . ..+..+.+++||+
T Consensus 116 gktvGIIG-~G~IG~~va~~l~a~G~-----~V~~----~Dp~~~~~~-------~~~-~-------~~~l~ell~~aDi 170 (381)
T PRK00257 116 ERTYGVVG-AGHVGGRLVRVLRGLGW-----KVLV----CDPPRQEAE-------GDG-D-------FVSLERILEECDV 170 (381)
T ss_pred cCEEEEEC-CCHHHHHHHHHHHHCCC-----EEEE----ECCcccccc-------cCc-c-------ccCHHHHHhhCCE
Confidence 46899999 59999999999886543 2433 344221110 000 0 1245677899999
Q ss_pred EEEeC
Q 013619 176 ALLIG 180 (439)
Q Consensus 176 VIita 180 (439)
|++..
T Consensus 171 V~lh~ 175 (381)
T PRK00257 171 ISLHT 175 (381)
T ss_pred EEEeC
Confidence 99863
No 449
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=88.17 E-value=4.9 Score=38.59 Aligned_cols=113 Identities=14% Similarity=0.028 Sum_probs=71.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccE-EEec---------C
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREV-KIGI---------N 165 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v-~i~~---------~ 165 (439)
...|-|.|++..||-.+|..+..-+- ++.+ +.+++++|...-...-.. ...+ .+.. -
T Consensus 5 gnTiLITGG~sGIGl~lak~f~elgN-----~VIi----~gR~e~~L~e~~~~~p~~----~t~v~Dv~d~~~~~~lvew 71 (245)
T COG3967 5 GNTILITGGASGIGLALAKRFLELGN-----TVII----CGRNEERLAEAKAENPEI----HTEVCDVADRDSRRELVEW 71 (245)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHhCC-----EEEE----ecCcHHHHHHHHhcCcch----heeeecccchhhHHHHHHH
Confidence 35799999999999999999887542 3444 588888887542221111 1111 1111 1
Q ss_pred cccccCCCcEEEEeCCcCCCCCCc-----h---hhh----HHHHHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 166 PYELFEDAEWALLIGAKPRGPGME-----R---AGL----LDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 166 ~~eal~dADiVIitag~~~kpg~~-----r---~~l----l~~N~~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
..+..-+-+++|..||+.+..... . .+. |..-+.+...+.+.+.+. |++-||+||.
T Consensus 72 Lkk~~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q--~~a~IInVSS 139 (245)
T COG3967 72 LKKEYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQ--PEATIINVSS 139 (245)
T ss_pred HHhhCCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCceEEEecc
Confidence 234566788999999987644321 1 112 233466677888888884 8999999985
No 450
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=88.02 E-value=1.8 Score=45.75 Aligned_cols=92 Identities=12% Similarity=0.113 Sum_probs=55.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (439)
...+|.|+|+ |.||..++..+...+. .|.+ +|++..++...+++ . + . + .+..++++++|
T Consensus 211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga-----~ViV----~d~dp~ra~~A~~~---G---~--~--v-~~l~eal~~aD 269 (425)
T PRK05476 211 AGKVVVVAGY-GDVGKGCAQRLRGLGA-----RVIV----TEVDPICALQAAMD---G---F--R--V-MTMEEAAELGD 269 (425)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-----EEEE----EcCCchhhHHHHhc---C---C--E--e-cCHHHHHhCCC
Confidence 4468999995 9999999999887653 2544 35554443322221 1 1 1 1 12457788999
Q ss_pred EEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 013619 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (439)
Q Consensus 175 iVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPv 225 (439)
+||.+.|. ..++.. ..+... .+++++++++-+-
T Consensus 270 VVI~aTG~---------------~~vI~~--~~~~~m-K~GailiNvG~~d 302 (425)
T PRK05476 270 IFVTATGN---------------KDVITA--EHMEAM-KDGAILANIGHFD 302 (425)
T ss_pred EEEECCCC---------------HHHHHH--HHHhcC-CCCCEEEEcCCCC
Confidence 99887542 122321 123333 4788999998654
No 451
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=87.62 E-value=1.8 Score=43.89 Aligned_cols=82 Identities=13% Similarity=0.191 Sum_probs=46.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHH--------hcccCC-CCccEEEecCc
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL--------EDSLFP-LLREVKIGINP 166 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL--------~~~~~~-~~~~v~i~~~~ 166 (439)
++||+-||| |.||.....-++.. +. +|.+.++ |.+..+..+.--|- .+.... ...+.-..++-
T Consensus 1 ~~kicciga-gyvggptcavia~k--cp---~i~vtvv--d~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdi 72 (481)
T KOG2666|consen 1 MVKICCIGA-GYVGGPTCAVIALK--CP---DIEVTVV--DISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDI 72 (481)
T ss_pred CceEEEecC-cccCCcchheeeec--CC---ceEEEEE--ecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecch
Confidence 579999996 99998744333321 11 2444333 55555554332110 000000 11244456788
Q ss_pred ccccCCCcEEEEeCCcCCC
Q 013619 167 YELFEDAEWALLIGAKPRG 185 (439)
Q Consensus 167 ~eal~dADiVIitag~~~k 185 (439)
+.+++.||+|++....|.|
T Consensus 73 ekai~eadlvfisvntptk 91 (481)
T KOG2666|consen 73 EKAIKEADLVFISVNTPTK 91 (481)
T ss_pred HHHhhhcceEEEEecCCcc
Confidence 8999999999997665543
No 452
>PRK06484 short chain dehydrogenase; Validated
Probab=87.49 E-value=1.6 Score=46.64 Aligned_cols=116 Identities=15% Similarity=0.093 Sum_probs=63.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEec---------Cc
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---------NP 166 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~---------~~ 166 (439)
...+.|+||++.||.+++..|+..+. .+.+ .+++.++++....++.... ......++. ..
T Consensus 5 ~k~~lITGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~ 73 (520)
T PRK06484 5 SRVVLVTGAAGGIGRAACQRFARAGD-----QVVV----ADRNVERARERADSLGPDH--HALAMDVSDEAQIREGFEQL 73 (520)
T ss_pred CeEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhCCce--eEEEeccCCHHHHHHHHHHH
Confidence 34788999999999999999998763 2545 3566666665555442111 000111111 01
Q ss_pred ccccCCCcEEEEeCCcC--C-CC--CCc---hhhhHHHH----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 013619 167 YELFEDAEWALLIGAKP--R-GP--GME---RAGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (439)
Q Consensus 167 ~eal~dADiVIitag~~--~-kp--g~~---r~~ll~~N----~~ii~~i~~~i~~~a~p~aivIvvtN 223 (439)
.+.+...|++|..+|.. . .+ ..+ -...+..| ..+++...+.+.+. ...+.|++++.
T Consensus 74 ~~~~g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~~iv~isS 141 (520)
T PRK06484 74 HREFGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQ-GHGAAIVNVAS 141 (520)
T ss_pred HHHhCCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCCeEEEECC
Confidence 12235689999998862 1 11 111 12234444 33455556666553 23336676653
No 453
>PLN03139 formate dehydrogenase; Provisional
Probab=87.46 E-value=1.8 Score=45.18 Aligned_cols=102 Identities=17% Similarity=0.214 Sum_probs=58.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (439)
-++|+||| .|.||..++..|...+. .+.. .|++....+ ...++ .+....+..+.+++||+
T Consensus 199 gktVGIVG-~G~IG~~vA~~L~afG~-----~V~~----~d~~~~~~~-~~~~~---------g~~~~~~l~ell~~sDv 258 (386)
T PLN03139 199 GKTVGTVG-AGRIGRLLLQRLKPFNC-----NLLY----HDRLKMDPE-LEKET---------GAKFEEDLDAMLPKCDV 258 (386)
T ss_pred CCEEEEEe-ecHHHHHHHHHHHHCCC-----EEEE----ECCCCcchh-hHhhc---------CceecCCHHHHHhhCCE
Confidence 35999999 59999999999876442 2433 354322211 11111 11122356788899999
Q ss_pred EEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeC--CchhHHHHH
Q 013619 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG--NPCNTNALI 231 (439)
Q Consensus 176 VIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvt--NPvd~~t~i 231 (439)
|++.. |.. .+...++ | .+.+... .+++++|+++ ..+|.-+.+
T Consensus 259 V~l~l--Plt--~~T~~li--~-------~~~l~~m-k~ga~lIN~aRG~iVDe~AL~ 302 (386)
T PLN03139 259 VVINT--PLT--EKTRGMF--N-------KERIAKM-KKGVLIVNNARGAIMDTQAVA 302 (386)
T ss_pred EEEeC--CCC--HHHHHHh--C-------HHHHhhC-CCCeEEEECCCCchhhHHHHH
Confidence 99973 211 1111122 2 2345554 6889999997 445554443
No 454
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=87.43 E-value=1.9 Score=43.79 Aligned_cols=31 Identities=35% Similarity=0.398 Sum_probs=25.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEec
Q 013619 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLL 133 (439)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~ 133 (439)
||.|||+ |.+|+.++..|+..|+ + .|.|.|.
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gv-g---~ItIvD~ 31 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGF-G---EIHIIDL 31 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcC-C---eEEEEcC
Confidence 6899995 9999999999999886 3 3666543
No 455
>PRK07877 hypothetical protein; Provisional
Probab=87.40 E-value=1.2 Score=49.98 Aligned_cols=34 Identities=24% Similarity=0.356 Sum_probs=27.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecc
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG 134 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~ 134 (439)
..||.|+|+ | +|++++..|+..+++++ |.|.+.|
T Consensus 107 ~~~V~IvG~-G-lGs~~a~~LaraGvvG~---l~lvD~D 140 (722)
T PRK07877 107 RLRIGVVGL-S-VGHAIAHTLAAEGLCGE---LRLADFD 140 (722)
T ss_pred cCCEEEEEe-c-HHHHHHHHHHHccCCCe---EEEEcCC
Confidence 469999996 8 99999999999887664 6665443
No 456
>PRK06484 short chain dehydrogenase; Validated
Probab=87.38 E-value=1.6 Score=46.62 Aligned_cols=120 Identities=15% Similarity=0.112 Sum_probs=64.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecC---------
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--------- 165 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~--------- 165 (439)
..+++.|+||+|.||.+++..|+..+. .+.+ .+++.++++..+.++.... ......++..
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~ 336 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGD-----RLLI----IDRDAEGAKKLAEALGDEH--LSVQADITDEAAVESAFAQ 336 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhCCce--eEEEccCCCHHHHHHHHHH
Confidence 346899999999999999999998763 2544 3666666665554442111 0001111110
Q ss_pred cccccCCCcEEEEeCCcCC--CCC--Cc---hhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 013619 166 PYELFEDAEWALLIGAKPR--GPG--ME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (439)
Q Consensus 166 ~~eal~dADiVIitag~~~--kpg--~~---r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPv 225 (439)
..+.+..-|++|..+|... .+- .+ -...+..|..-...+.+.+..+-...+.||+++.-.
T Consensus 337 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~ 403 (520)
T PRK06484 337 IQARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIA 403 (520)
T ss_pred HHHHcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchh
Confidence 1112345799999888642 221 11 123345554333333333222212346778777643
No 457
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=87.17 E-value=2.3 Score=42.43 Aligned_cols=74 Identities=15% Similarity=0.091 Sum_probs=45.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccch---hhHHHHHHHHhcccCCCCccEE---Eec--Ccc
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL---QALEGVAMELEDSLFPLLREVK---IGI--NPY 167 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~---e~l~g~a~DL~~~~~~~~~~v~---i~~--~~~ 167 (439)
..++.|+|| |.+|.++++.|+..+.- .|.+ .+++. ++++..+.++.+.. +. ..+. +.. +..
T Consensus 126 ~k~vlI~GA-GGagrAia~~La~~G~~----~V~I----~~R~~~~~~~a~~l~~~l~~~~-~~-~~~~~~d~~~~~~~~ 194 (289)
T PRK12548 126 GKKLTVIGA-GGAATAIQVQCALDGAK----EITI----FNIKDDFYERAEQTAEKIKQEV-PE-CIVNVYDLNDTEKLK 194 (289)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCC----EEEE----EeCCchHHHHHHHHHHHHhhcC-CC-ceeEEechhhhhHHH
Confidence 457999996 99999999999887642 2665 35664 56666666664321 10 0111 110 112
Q ss_pred cccCCCcEEEEeC
Q 013619 168 ELFEDAEWALLIG 180 (439)
Q Consensus 168 eal~dADiVIita 180 (439)
+.++.+|+||.+-
T Consensus 195 ~~~~~~DilINaT 207 (289)
T PRK12548 195 AEIASSDILVNAT 207 (289)
T ss_pred hhhccCCEEEEeC
Confidence 3567789999963
No 458
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=87.11 E-value=3.8 Score=38.48 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.4
Q ss_pred EEEEcCCCchHHHHHHHHHhcCC
Q 013619 99 IAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l 121 (439)
|.|+||+|.+|.+++..|+..+.
T Consensus 1 vlItGas~giG~~~a~~l~~~G~ 23 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGF 23 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCC
Confidence 46999999999999999998763
No 459
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=87.01 E-value=1.2 Score=45.50 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=21.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
+||+|+||+|.+|..++..|...+.
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~ 25 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPY 25 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC
Confidence 5899999999999999998877553
No 460
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=86.90 E-value=4.1 Score=44.79 Aligned_cols=81 Identities=21% Similarity=0.300 Sum_probs=48.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhh------HHHHHHHHhcccCCCC-ccEEEecCcc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA------LEGVAMELEDSLFPLL-REVKIGINPY 167 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~------l~g~a~DL~~~~~~~~-~~v~i~~~~~ 167 (439)
+..||+|+| .|.+|++++..|+..|+-. |.. ++.|.-... +...|.++.... ..- -+.....+..
T Consensus 128 R~akVlVlG-~Gg~~s~lv~sL~~sG~~~----I~~--vd~D~v~SNlnRIgEl~e~A~~~n~~v-~v~~i~~~~~~dl~ 199 (637)
T TIGR03693 128 RNAKILAAG-SGDFLTKLVRSLIDSGFPR----FHA--IVTDAEEHALDRIHELAEIAEETDDAL-LVQEIDFAEDQHLH 199 (637)
T ss_pred hcccEEEEe-cCchHHHHHHHHHhcCCCc----EEE--EeccccchhhhHHHHHHHHHHHhCCCC-ceEeccCCcchhHH
Confidence 456999999 5999999999999988743 533 323332221 222333322111 000 0112234567
Q ss_pred cccCCCcEEEEeCCcC
Q 013619 168 ELFEDAEWALLIGAKP 183 (439)
Q Consensus 168 eal~dADiVIitag~~ 183 (439)
+.+++.|+||.++..|
T Consensus 200 ev~~~~DiVi~vsDdy 215 (637)
T TIGR03693 200 EAFEPADWVLYVSDNG 215 (637)
T ss_pred HhhcCCcEEEEECCCC
Confidence 8999999999986544
No 461
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=86.86 E-value=1.5 Score=47.03 Aligned_cols=67 Identities=15% Similarity=0.152 Sum_probs=44.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (439)
.+++.|+|+ |.+|.+++..|...+. .+.+ .+++.++++..+.++.... +...+..++.++|+
T Consensus 332 ~k~vlIiGa-GgiG~aia~~L~~~G~-----~V~i----~~R~~~~~~~la~~~~~~~--------~~~~~~~~l~~~Di 393 (477)
T PRK09310 332 NQHVAIVGA-GGAAKAIATTLARAGA-----ELLI----FNRTKAHAEALASRCQGKA--------FPLESLPELHRIDI 393 (477)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhccce--------echhHhcccCCCCE
Confidence 468999995 9999999999998763 2554 3666666665544332111 11122334689999
Q ss_pred EEEeC
Q 013619 176 ALLIG 180 (439)
Q Consensus 176 VIita 180 (439)
||++.
T Consensus 394 VInat 398 (477)
T PRK09310 394 IINCL 398 (477)
T ss_pred EEEcC
Confidence 99974
No 462
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=86.74 E-value=4.5 Score=40.81 Aligned_cols=73 Identities=21% Similarity=0.163 Sum_probs=44.3
Q ss_pred CCCEEEEEcCC--CchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCC
Q 013619 95 KMVNIAVSGAA--GMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (439)
Q Consensus 95 ~~~KI~IIGA~--G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~d 172 (439)
+..||+++|-. ++|..+++..+..-+. ++.+. .....+.-..+...+.+ ....++++.+..+++++
T Consensus 149 ~g~~va~vGD~~~~~v~~Sl~~~~a~~g~-----~v~~~---~P~~~~~~~~~~~~~~~----~G~~v~~~~d~~~a~~~ 216 (301)
T TIGR00670 149 DGLKIALVGDLKYGRTVHSLAEALTRFGV-----EVYLI---SPEELRMPKEILEELKA----KGIKVRETESLEEVIDE 216 (301)
T ss_pred CCCEEEEEccCCCCcHHHHHHHHHHHcCC-----EEEEE---CCccccCCHHHHHHHHH----cCCEEEEECCHHHHhCC
Confidence 45799999964 5898888888776542 24432 12211111111111111 22367788889999999
Q ss_pred CcEEEEe
Q 013619 173 AEWALLI 179 (439)
Q Consensus 173 ADiVIit 179 (439)
||+|...
T Consensus 217 aDvvyt~ 223 (301)
T TIGR00670 217 ADVLYVT 223 (301)
T ss_pred CCEEEEC
Confidence 9998774
No 463
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=86.72 E-value=7.6 Score=38.40 Aligned_cols=88 Identities=22% Similarity=0.234 Sum_probs=54.4
Q ss_pred CCEEEEEcCCCch--------------------HHHHHHHHHhcCCCCCCCceEEEecccccchhhHHH-HHHHHhcccC
Q 013619 96 MVNIAVSGAAGMI--------------------ANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG-VAMELEDSLF 154 (439)
Q Consensus 96 ~~KI~IIGA~G~V--------------------G~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g-~a~DL~~~~~ 154 (439)
+|||+|-|| ||- |+++|...+..+ . .++| .|+|.+-.+- +...++|+
T Consensus 1 ~mkv~vyga-gnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAG---H--DVVL----aePn~d~~dd~~w~~vedA-- 68 (340)
T COG4007 1 MMKVAVYGA-GNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAG---H--DVVL----AEPNRDIMDDEHWKRVEDA-- 68 (340)
T ss_pred CceEEEEcC-CccchhHHhcCChhhhCCCCCCCchHHHHHHHHcC---C--cEEe----ecCCccccCHHHHHHHHhc--
Confidence 478888886 652 566777766544 2 3667 4555443332 12223333
Q ss_pred CCCccEEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHh
Q 013619 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA 210 (439)
Q Consensus 155 ~~~~~v~i~~~~~eal~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~ 210 (439)
.+++++||.++.+.+.+.|+.-- .| +.+..|.++|...+.+
T Consensus 69 ----GV~vv~dD~eaa~~~Ei~VLFTP----FG-------k~T~~Iarei~~hvpE 109 (340)
T COG4007 69 ----GVEVVSDDAEAAEHGEIHVLFTP----FG-------KATFGIAREILEHVPE 109 (340)
T ss_pred ----CcEEecCchhhhhcceEEEEecc----cc-------hhhHHHHHHHHhhCcC
Confidence 47889999999999999887521 12 1245777777766554
No 464
>PRK09330 cell division protein FtsZ; Validated
Probab=86.70 E-value=4.5 Score=42.23 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCC
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLG 123 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~ 123 (439)
...||.||| .|.-|...+..+...++-+
T Consensus 12 ~~~~IkViG-vGG~G~Nav~~m~~~~~~~ 39 (384)
T PRK09330 12 QGAVIKVIG-VGGGGGNAVNRMIEEGIQG 39 (384)
T ss_pred cCCeEEEEE-ECCcHHHHHHHHHHcCCCC
Confidence 456999999 5999999999998877643
No 465
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.52 E-value=7.2 Score=37.16 Aligned_cols=25 Identities=8% Similarity=-0.020 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~ 120 (439)
.+++.|+||+|.||.+++..|+..+
T Consensus 7 ~k~~lItGas~gIG~~~a~~l~~~G 31 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAEAFLREG 31 (255)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC
Confidence 4689999999999999999999876
No 466
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=86.47 E-value=0.69 Score=53.91 Aligned_cols=78 Identities=14% Similarity=0.192 Sum_probs=46.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCCCC------CC---CceEEEecccccchhhHHHHHHHHhcccCCCCccEEE-e
Q 013619 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLG------PD---QPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-G 163 (439)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~------~~---~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i-~ 163 (439)
.++.||+|||| |.||...+..|+..+-+. ++ ..+++ .|++.++++..+..+... ..+.+ .
T Consensus 567 ~~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~V----aD~~~~~a~~la~~~~~~-----~~v~lDv 636 (1042)
T PLN02819 567 KKSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIV----ASLYLKDAKETVEGIENA-----EAVQLDV 636 (1042)
T ss_pred ccCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEE----ECCCHHHHHHHHHhcCCC-----ceEEeec
Confidence 45779999996 999999999998653221 11 11333 466666666555433111 11222 2
Q ss_pred cC---cccccCCCcEEEEeCC
Q 013619 164 IN---PYELFEDAEWALLIGA 181 (439)
Q Consensus 164 ~~---~~eal~dADiVIitag 181 (439)
++ ..+.++++|+||++..
T Consensus 637 ~D~e~L~~~v~~~DaVIsalP 657 (1042)
T PLN02819 637 SDSESLLKYVSQVDVVISLLP 657 (1042)
T ss_pred CCHHHHHHhhcCCCEEEECCC
Confidence 22 2233468999999743
No 467
>PLN02996 fatty acyl-CoA reductase
Probab=86.33 E-value=11 Score=40.66 Aligned_cols=42 Identities=12% Similarity=0.011 Sum_probs=28.4
Q ss_pred cccCCCcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHh
Q 013619 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA 210 (439)
Q Consensus 168 eal~dADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~ 210 (439)
+.++++|+||.+|+... ......+....|+.-...+.+...+
T Consensus 108 ~l~~~vD~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~~a~~ 149 (491)
T PLN02996 108 EMWKEIDIVVNLAATTN-FDERYDVALGINTLGALNVLNFAKK 149 (491)
T ss_pred HHHhCCCEEEECccccC-CcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 34578999999887543 2233445667787777777776665
No 468
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=86.26 E-value=1.4 Score=45.65 Aligned_cols=72 Identities=8% Similarity=0.140 Sum_probs=45.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEe----cCccccc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG----INPYELF 170 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~----~~~~eal 170 (439)
++.||.|+|+ |.+|...+..+...+. .+.+ +|++.++++.....+.. .+... ....+.+
T Consensus 166 ~~~~VlViGa-G~vG~~aa~~a~~lGa-----~V~v----~d~~~~~~~~l~~~~g~-------~v~~~~~~~~~l~~~l 228 (370)
T TIGR00518 166 EPGDVTIIGG-GVVGTNAAKMANGLGA-----TVTI----LDINIDRLRQLDAEFGG-------RIHTRYSNAYEIEDAV 228 (370)
T ss_pred CCceEEEEcC-CHHHHHHHHHHHHCCC-----eEEE----EECCHHHHHHHHHhcCc-------eeEeccCCHHHHHHHH
Confidence 4568999996 9999999999887663 2554 46666665543332211 11111 1234567
Q ss_pred CCCcEEEEeCCcC
Q 013619 171 EDAEWALLIGAKP 183 (439)
Q Consensus 171 ~dADiVIitag~~ 183 (439)
+++|+||.+.+.|
T Consensus 229 ~~aDvVI~a~~~~ 241 (370)
T TIGR00518 229 KRADLLIGAVLIP 241 (370)
T ss_pred ccCCEEEEccccC
Confidence 8999999987654
No 469
>PRK08177 short chain dehydrogenase; Provisional
Probab=86.06 E-value=1.5 Score=41.07 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~ 120 (439)
|++|.|+||+|.+|.+++..|+..+
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G 25 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERG 25 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCC
Confidence 3579999999999999999999876
No 470
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=86.03 E-value=2.6 Score=44.34 Aligned_cols=91 Identities=10% Similarity=0.109 Sum_probs=53.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (439)
...+|+|+|+ |.||..++..+...+. .+.. +|.+..++. .+. .+. + .+ ....++++++|
T Consensus 194 ~Gk~VvViG~-G~IG~~vA~~ak~~Ga-----~ViV----~d~dp~r~~-~A~--~~G---~----~v-~~leeal~~aD 252 (406)
T TIGR00936 194 AGKTVVVAGY-GWCGKGIAMRARGMGA-----RVIV----TEVDPIRAL-EAA--MDG---F----RV-MTMEEAAKIGD 252 (406)
T ss_pred CcCEEEEECC-CHHHHHHHHHHhhCcC-----EEEE----EeCChhhHH-HHH--hcC---C----Ee-CCHHHHHhcCC
Confidence 4569999995 9999999998876553 2444 244434332 111 111 1 11 12356789999
Q ss_pred EEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 013619 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 175 iVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNP 224 (439)
+||.+.|. ..++..- .+... .+++++++++-.
T Consensus 253 VVItaTG~---------------~~vI~~~--~~~~m-K~GailiN~G~~ 284 (406)
T TIGR00936 253 IFITATGN---------------KDVIRGE--HFENM-KDGAIVANIGHF 284 (406)
T ss_pred EEEECCCC---------------HHHHHHH--HHhcC-CCCcEEEEECCC
Confidence 99886542 2333321 23333 478899998864
No 471
>PRK07578 short chain dehydrogenase; Provisional
Probab=85.98 E-value=2 Score=39.42 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAG 119 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~ 119 (439)
|++.|+||+|.+|.+++..|+..
T Consensus 1 ~~vlItGas~giG~~la~~l~~~ 23 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR 23 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc
Confidence 58999999999999999999876
No 472
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=85.91 E-value=3.7 Score=44.73 Aligned_cols=137 Identities=14% Similarity=0.032 Sum_probs=80.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHh----cCCCCCC--CceEEEecccc--cch---hhHHHHHHHHhcccCCCCccEEEec
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAA----GEVLGPD--QPIALKLLGSE--RSL---QALEGVAMELEDSLFPLLREVKIGI 164 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~----~~l~~~~--~~I~L~l~~~d--~~~---e~l~g~a~DL~~~~~~~~~~v~i~~ 164 (439)
-.||.|.|| |..|..+|..|+. .++-.++ +.|.+ +|.. +.. +.+...-..+.+.. .........
T Consensus 297 d~riv~~GA-GsAgiGia~ll~~~m~~~Gls~eeA~~~i~~--vD~~GLl~~~r~~~l~~~k~~fa~~~--~~~~~~~~~ 371 (559)
T PTZ00317 297 EQRIVFFGA-GSAAIGVANNIADLAAEYGVTREEALKSFYL--VDSKGLVTTTRGDKLAKHKVPFARTD--ISAEDSSLK 371 (559)
T ss_pred hcEEEEECC-CHHHHHHHHHHHHHHHHcCCChhHhcCeEEE--EcCCCeEeCCCCccccHHHHHHhccc--cccccccCC
Confidence 369999996 9999999988874 4542211 23444 3322 111 11222222232211 000000124
Q ss_pred CcccccCCC--cEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCch---hHHHHHHHHHCCCC
Q 013619 165 NPYELFEDA--EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC---NTNALICLKNAPSI 239 (439)
Q Consensus 165 ~~~eal~dA--DiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPv---d~~t~i~~k~s~~~ 239 (439)
+..++++++ |++|=+.+.| | -+-+++++.|.++ ++..+|.-.+||. .+...-+++.+.|
T Consensus 372 ~L~e~v~~~KPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~-~~rPIIFaLSNPt~~aE~tpeda~~~T~G- 435 (559)
T PTZ00317 372 TLEDVVRFVKPTALLGLSGVG---G-----------VFTEEVVKTMASN-VERPIIFPLSNPTSKAECTAEDAYKWTNG- 435 (559)
T ss_pred CHHHHHhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhc-CCCCEEEECCCCCCCCCcCHHHHHhhccC-
Confidence 688999999 9887655433 2 1223566677777 6889999999997 6667777776533
Q ss_pred CCCceeccccchHHH
Q 013619 240 PAKNFHALTRLDENR 254 (439)
Q Consensus 240 p~kvig~gt~LDs~R 254 (439)
+-+|.+|+-.+...
T Consensus 436 -rai~AtGspf~pv~ 449 (559)
T PTZ00317 436 -RAIVASGSPFPPVT 449 (559)
T ss_pred -CEEEEECCCCCCcc
Confidence 24788888766543
No 473
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=85.84 E-value=1.9 Score=42.84 Aligned_cols=64 Identities=13% Similarity=0.021 Sum_probs=43.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (439)
.++.|+|| |..+.++++.|...+.. +|.+ .+++.++++.++.++. . .+. .. ....++|+|
T Consensus 123 ~~vlilGa-GGaarAi~~aL~~~g~~----~i~i----~nR~~~~a~~la~~~~-~--~~~-------~~-~~~~~~dlv 182 (272)
T PRK12550 123 LVVALRGS-GGMAKAVAAALRDAGFT----DGTI----VARNEKTGKALAELYG-Y--EWR-------PD-LGGIEADIL 182 (272)
T ss_pred CeEEEECC-cHHHHHHHHHHHHCCCC----EEEE----EeCCHHHHHHHHHHhC-C--cch-------hh-cccccCCEE
Confidence 48999996 99999999999987652 3666 4777788777766542 1 110 00 112568999
Q ss_pred EEeC
Q 013619 177 LLIG 180 (439)
Q Consensus 177 Iita 180 (439)
|.+-
T Consensus 183 INaT 186 (272)
T PRK12550 183 VNVT 186 (272)
T ss_pred EECC
Confidence 9973
No 474
>PLN02494 adenosylhomocysteinase
Probab=85.83 E-value=2.6 Score=45.10 Aligned_cols=95 Identities=13% Similarity=0.117 Sum_probs=56.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (439)
...+|+|+|. |.||..++..+...+. .|.+ ++++..++. .+. .+. + .+ ....++++.+|
T Consensus 253 aGKtVvViGy-G~IGr~vA~~aka~Ga-----~VIV----~e~dp~r~~-eA~--~~G---~--~v---v~leEal~~AD 311 (477)
T PLN02494 253 AGKVAVICGY-GDVGKGCAAAMKAAGA-----RVIV----TEIDPICAL-QAL--MEG---Y--QV---LTLEDVVSEAD 311 (477)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-----EEEE----EeCCchhhH-HHH--hcC---C--ee---ccHHHHHhhCC
Confidence 3468999995 9999999999876553 2444 345444322 121 111 1 11 12356789999
Q ss_pred EEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhHH
Q 013619 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (439)
Q Consensus 175 iVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPvd~~ 228 (439)
+||.+.|.. .++. ...+... .+++++++++-+.+.+
T Consensus 312 VVI~tTGt~---------------~vI~--~e~L~~M-K~GAiLiNvGr~~~eI 347 (477)
T PLN02494 312 IFVTTTGNK---------------DIIM--VDHMRKM-KNNAIVCNIGHFDNEI 347 (477)
T ss_pred EEEECCCCc---------------cchH--HHHHhcC-CCCCEEEEcCCCCCcc
Confidence 999875532 1111 1234444 5789999999864333
No 475
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=85.75 E-value=2.7 Score=43.86 Aligned_cols=32 Identities=28% Similarity=0.300 Sum_probs=25.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEe
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL 132 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l 132 (439)
..||.|||+ |.+|+.++..|+..++- .|.|.+
T Consensus 42 ~~~VlviG~-GGlGs~va~~La~~Gvg----~i~lvD 73 (392)
T PRK07878 42 NARVLVIGA-GGLGSPTLLYLAAAGVG----TLGIVE 73 (392)
T ss_pred cCCEEEECC-CHHHHHHHHHHHHcCCC----eEEEEC
Confidence 349999995 99999999999998863 255544
No 476
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=85.67 E-value=2.3 Score=44.62 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=26.9
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 92 ~~~~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
.+.++.+|.|+||+|.+|.-+...|..++.
T Consensus 75 ~~~~~~~VlVvGatG~vG~~iv~~llkrgf 104 (411)
T KOG1203|consen 75 NSKKPTTVLVVGATGKVGRRIVKILLKRGF 104 (411)
T ss_pred CCCCCCeEEEecCCCchhHHHHHHHHHCCC
Confidence 456788999999999999999999999884
No 477
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=85.65 E-value=1.8 Score=42.94 Aligned_cols=74 Identities=26% Similarity=0.231 Sum_probs=43.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcEE
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (439)
..++|+||.|.||+.++..|+...- .++|.+ +..++.......+.+. +..+.+ +.+.+|+-+ ++|++
T Consensus 168 atvaivGa~G~Ia~~Iar~la~~~~-----~~~ll~----r~aea~~rq~l~~l~e--~~~~~~-i~s~d~~~~-~e~i~ 234 (351)
T COG5322 168 ATVAIVGATGDIASAIARWLAPKVG-----VKELLL----RDAEARNRQRLTLLQE--ELGRGK-IMSLDYALP-QEDIL 234 (351)
T ss_pred CeEEEecCCchHHHHHHHHhccccC-----EEEEec----ccHHhhhhhhhhhccc--ccCCCe-eeecccccc-ccceE
Confidence 4799999999999999999886542 245532 2233444444433332 233333 334455544 56666
Q ss_pred EEeCCcC
Q 013619 177 LLIGAKP 183 (439)
Q Consensus 177 Iitag~~ 183 (439)
|..|..|
T Consensus 235 v~vAs~~ 241 (351)
T COG5322 235 VWVASMP 241 (351)
T ss_pred EEEeecC
Confidence 7666554
No 478
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=85.57 E-value=3.2 Score=40.26 Aligned_cols=32 Identities=31% Similarity=0.349 Sum_probs=25.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecc
Q 013619 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG 134 (439)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~ 134 (439)
||.|+|+ |.+|+.++..|+..++ + .|.+.+.|
T Consensus 1 kVlvvG~-GGlG~eilk~La~~Gv-g---~i~ivD~D 32 (234)
T cd01484 1 KVLLVGA-GGIGCELLKNLALMGF-G---QIHVIDMD 32 (234)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCC-C---eEEEEeCC
Confidence 6899995 9999999999999886 3 26664443
No 479
>PRK07411 hypothetical protein; Validated
Probab=85.55 E-value=2.6 Score=43.94 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
+..||.|||+ |.+|+.++..|+..++
T Consensus 37 ~~~~VlivG~-GGlG~~va~~La~~Gv 62 (390)
T PRK07411 37 KAASVLCIGT-GGLGSPLLLYLAAAGI 62 (390)
T ss_pred hcCcEEEECC-CHHHHHHHHHHHHcCC
Confidence 3459999995 9999999999999886
No 480
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=85.42 E-value=2.5 Score=45.25 Aligned_cols=91 Identities=13% Similarity=0.112 Sum_probs=54.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCc
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (439)
.-.+|+|+|. |.||..+|..+...+. .|.+ ++++..+.. .+.. +. + .. .+..+.++.||
T Consensus 253 aGKtVgVIG~-G~IGr~vA~rL~a~Ga-----~ViV----~e~dp~~a~-~A~~--~G---~----~~-~~leell~~AD 311 (476)
T PTZ00075 253 AGKTVVVCGY-GDVGKGCAQALRGFGA-----RVVV----TEIDPICAL-QAAM--EG---Y----QV-VTLEDVVETAD 311 (476)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-----EEEE----EeCCchhHH-HHHh--cC---c----ee-ccHHHHHhcCC
Confidence 3469999995 9999999999886553 2444 233333321 1111 11 1 11 13457789999
Q ss_pred EEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 013619 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (439)
Q Consensus 175 iVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNP 224 (439)
+||++.|.+ .++. .+.+... .|++++++++-.
T Consensus 312 IVI~atGt~---------------~iI~--~e~~~~M-KpGAiLINvGr~ 343 (476)
T PTZ00075 312 IFVTATGNK---------------DIIT--LEHMRRM-KNNAIVGNIGHF 343 (476)
T ss_pred EEEECCCcc---------------cccC--HHHHhcc-CCCcEEEEcCCC
Confidence 999975421 1221 1234444 588999999866
No 481
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.28 E-value=2.3 Score=42.54 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCc-hHHHHHHHHHhcCC
Q 013619 95 KMVNIAVSGAAGM-IANHLLFKLAAGEV 121 (439)
Q Consensus 95 ~~~KI~IIGA~G~-VG~~la~~L~~~~l 121 (439)
+..+|+|+|+ |. +|..+++.|+..+.
T Consensus 158 ~Gk~vvViG~-gg~vGkpia~~L~~~ga 184 (283)
T PRK14192 158 AGKHAVVVGR-SAILGKPMAMMLLNANA 184 (283)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHhCCC
Confidence 3469999997 66 99999999987663
No 482
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=85.28 E-value=5.6 Score=37.06 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=19.7
Q ss_pred EEEEcCCCchHHHHHHHHHhcC
Q 013619 99 IAVSGAAGMIANHLLFKLAAGE 120 (439)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~ 120 (439)
|.|+|++|.+|..++..|+..+
T Consensus 1 vlItG~~g~iG~~la~~l~~~G 22 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEG 22 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCC
Confidence 4689999999999999999876
No 483
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=85.28 E-value=10 Score=36.18 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=21.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcC
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGE 120 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~ 120 (439)
..+.|+||+|.||.+++..|+..+
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G 34 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAG 34 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC
Confidence 479999999999999999999876
No 484
>PRK08303 short chain dehydrogenase; Provisional
Probab=85.13 E-value=11 Score=37.61 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=22.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
+.+.|+||++.||.+++..|+..+.
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~ 33 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGA 33 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC
Confidence 5789999999999999999998763
No 485
>PRK06841 short chain dehydrogenase; Provisional
Probab=85.10 E-value=3.1 Score=39.51 Aligned_cols=26 Identities=23% Similarity=0.114 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
..+|.|+||+|.||.+++..|+..+.
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~G~ 40 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAKGA 40 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 45899999999999999999998763
No 486
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=85.09 E-value=8.1 Score=36.24 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=30.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHh
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~ 150 (439)
..|.|+||+|.||.+++..|+..+. .+.+. ..++.++++....++.
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~-----~v~~~---~~~~~~~~~~~~~~~~ 47 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGY-----TVAVN---YQQNLHAAQEVVNLIT 47 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE---eCCChHHHHHHHHHHH
Confidence 3689999999999999999997663 24331 1344555554545544
No 487
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=85.09 E-value=1.6 Score=42.97 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~ 120 (439)
++||+|+|++|.+|..++..+...+
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~ 25 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAE 25 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCC
Confidence 4799999966999999999887653
No 488
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=85.05 E-value=1 Score=47.23 Aligned_cols=67 Identities=19% Similarity=0.256 Sum_probs=41.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEec-----Cccc-cc
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-----NPYE-LF 170 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~-----~~~e-al 170 (439)
|||.|+|+ |.+|.+++..|...+. ++.+ +|.+.++++....++. . .+..+. ...+ .+
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~-----~v~v----id~~~~~~~~~~~~~~-~------~~~~gd~~~~~~l~~~~~ 63 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENN-----DVTV----IDTDEERLRRLQDRLD-V------RTVVGNGSSPDVLREAGA 63 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-----cEEE----EECCHHHHHHHHhhcC-E------EEEEeCCCCHHHHHHcCC
Confidence 68999996 9999999999987653 2544 4666666654322110 0 111111 1122 37
Q ss_pred CCCcEEEEeC
Q 013619 171 EDAEWALLIG 180 (439)
Q Consensus 171 ~dADiVIita 180 (439)
.++|.||++.
T Consensus 64 ~~a~~vi~~~ 73 (453)
T PRK09496 64 EDADLLIAVT 73 (453)
T ss_pred CcCCEEEEec
Confidence 8999999874
No 489
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=85.04 E-value=2.8 Score=42.76 Aligned_cols=100 Identities=22% Similarity=0.310 Sum_probs=56.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCCcE
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (439)
-++++||| .|.||.++|..+.- |+ .+|.. .|+... .+ ...++. . .. .+..+.++.||+
T Consensus 146 gktvGIiG-~GrIG~avA~r~~~---Fg--m~v~y----~~~~~~-~~-~~~~~~-~--------~y-~~l~ell~~sDi 203 (324)
T COG1052 146 GKTLGIIG-LGRIGQAVARRLKG---FG--MKVLY----YDRSPN-PE-AEKELG-A--------RY-VDLDELLAESDI 203 (324)
T ss_pred CCEEEEEC-CCHHHHHHHHHHhc---CC--CEEEE----ECCCCC-hH-HHhhcC-c--------ee-ccHHHHHHhCCE
Confidence 46999999 69999999998872 33 23544 244322 11 111111 1 11 227899999999
Q ss_pred EEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCC--chhHHHHH
Q 013619 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN--PCNTNALI 231 (439)
Q Consensus 176 VIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtN--Pvd~~t~i 231 (439)
|++.... .+ .+|. + .|.+ .+++. .+++++|+++= =+|.-+.+
T Consensus 204 i~l~~Pl--t~-~T~h-L--in~~-------~l~~m-k~ga~lVNtaRG~~VDe~ALi 247 (324)
T COG1052 204 ISLHCPL--TP-ETRH-L--INAE-------ELAKM-KPGAILVNTARGGLVDEQALI 247 (324)
T ss_pred EEEeCCC--Ch-HHhh-h--cCHH-------HHHhC-CCCeEEEECCCccccCHHHHH
Confidence 9997421 11 1221 1 1222 34444 68899999873 24544443
No 490
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=84.95 E-value=4.5 Score=40.99 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=22.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
.||+|+||+|.+|.-++..|...+-
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~ 26 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDD 26 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCC
Confidence 4899999999999999999987654
No 491
>PRK06523 short chain dehydrogenase; Provisional
Probab=84.94 E-value=3.1 Score=39.74 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~ 120 (439)
.++|.|+||+|.||.+++..|+..+
T Consensus 9 ~k~vlItGas~gIG~~ia~~l~~~G 33 (260)
T PRK06523 9 GKRALVTGGTKGIGAATVARLLEAG 33 (260)
T ss_pred CCEEEEECCCCchhHHHHHHHHHCC
Confidence 3589999999999999999999865
No 492
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.92 E-value=3.5 Score=39.69 Aligned_cols=78 Identities=21% Similarity=0.159 Sum_probs=43.8
Q ss_pred CEEEEEcC--CCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEec---------C
Q 013619 97 VNIAVSGA--AGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---------N 165 (439)
Q Consensus 97 ~KI~IIGA--~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~---------~ 165 (439)
..+.|+|| ++.||.+++..|+..+. .+.+ .+.+.+.+.++..+.++......+ ...++. .
T Consensus 8 k~~lItGa~~s~GIG~a~a~~la~~G~-----~v~l--~~r~~~~~~~~~~~~~~~~~~~~~--~~Dv~~~~~i~~~~~~ 78 (256)
T PRK07889 8 KRILVTGVITDSSIAFHVARVAQEQGA-----EVVL--TGFGRALRLTERIAKRLPEPAPVL--ELDVTNEEHLASLADR 78 (256)
T ss_pred CEEEEeCCCCcchHHHHHHHHHHHCCC-----EEEE--ecCccchhHHHHHHHhcCCCCcEE--eCCCCCHHHHHHHHHH
Confidence 47899998 68999999999998763 2444 222333344454444443211000 111110 0
Q ss_pred cccccCCCcEEEEeCCcC
Q 013619 166 PYELFEDAEWALLIGAKP 183 (439)
Q Consensus 166 ~~eal~dADiVIitag~~ 183 (439)
..+.+...|++|..+|..
T Consensus 79 ~~~~~g~iD~li~nAG~~ 96 (256)
T PRK07889 79 VREHVDGLDGVVHSIGFA 96 (256)
T ss_pred HHHHcCCCcEEEEccccc
Confidence 122345789999988864
No 493
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=84.79 E-value=2.6 Score=40.34 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
..++.|+||+|.||.+++..|+..+.
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~ 33 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKAGA 33 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 35789999999999999999998764
No 494
>PLN02306 hydroxypyruvate reductase
Probab=84.71 E-value=3.5 Score=43.03 Aligned_cols=103 Identities=13% Similarity=0.075 Sum_probs=53.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchh-hHHHHHHHHhcc---cCCCCccEEEecCcccccCC
Q 013619 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ-ALEGVAMELEDS---LFPLLREVKIGINPYELFED 172 (439)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e-~l~g~a~DL~~~---~~~~~~~v~i~~~~~eal~d 172 (439)
.+|+||| .|+||..+|..+... |+ ..|.. .|+... ........+... .......+....+..+.++.
T Consensus 166 ktvGIiG-~G~IG~~vA~~l~~~--fG--m~V~~----~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~ 236 (386)
T PLN02306 166 QTVGVIG-AGRIGSAYARMMVEG--FK--MNLIY----YDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE 236 (386)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhc--CC--CEEEE----ECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhh
Confidence 6899999 599999999987532 22 12433 244321 111111111100 00000011222467788999
Q ss_pred CcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeC
Q 013619 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (439)
Q Consensus 173 ADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvt 222 (439)
||+|++..- ..+ .+ ..++.. +.+... .|++++|+++
T Consensus 237 sDiV~lh~P--lt~-~T--------~~lin~--~~l~~M-K~ga~lIN~a 272 (386)
T PLN02306 237 ADVISLHPV--LDK-TT--------YHLINK--ERLALM-KKEAVLVNAS 272 (386)
T ss_pred CCEEEEeCC--CCh-hh--------hhhcCH--HHHHhC-CCCeEEEECC
Confidence 999998632 111 11 122221 244444 5889999998
No 495
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=84.69 E-value=6.4 Score=40.39 Aligned_cols=93 Identities=25% Similarity=0.233 Sum_probs=56.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEec---CcccccC
Q 013619 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---NPYELFE 171 (439)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~---~~~eal~ 171 (439)
+-.+|+|+|+ |.+|...+..+...+ + ++.. +|+++++++ .+.+|-. +..+.+ +..++++
T Consensus 166 pG~~V~I~G~-GGlGh~avQ~Aka~g-a----~Via----~~~~~~K~e-~a~~lGA-------d~~i~~~~~~~~~~~~ 227 (339)
T COG1064 166 PGKWVAVVGA-GGLGHMAVQYAKAMG-A----EVIA----ITRSEEKLE-LAKKLGA-------DHVINSSDSDALEAVK 227 (339)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHcC-C----eEEE----EeCChHHHH-HHHHhCC-------cEEEEcCCchhhHHhH
Confidence 4579999996 888877666555444 3 2433 488888876 6666631 122221 2223333
Q ss_pred C-CcEEEEeCCcCCCCCCchhhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 013619 172 D-AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (439)
Q Consensus 172 d-ADiVIitag~~~kpg~~r~~ll~~N~~ii~~i~~~i~~~a~p~aivIvvtNPv 225 (439)
+ +|+||.+++ +. -+....+.+ .+++.++.+++|-
T Consensus 228 ~~~d~ii~tv~-~~---------------~~~~~l~~l----~~~G~~v~vG~~~ 262 (339)
T COG1064 228 EIADAIIDTVG-PA---------------TLEPSLKAL----RRGGTLVLVGLPG 262 (339)
T ss_pred hhCcEEEECCC-hh---------------hHHHHHHHH----hcCCEEEEECCCC
Confidence 3 999999976 31 122332333 3679999999994
No 496
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.63 E-value=16 Score=36.24 Aligned_cols=76 Identities=13% Similarity=0.032 Sum_probs=45.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEeccccc-chhhHHHHHHHHhcccCCCCccEEE-ecC--cccc--
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLREVKI-GIN--PYEL-- 169 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~~~d~-~~e~l~g~a~DL~~~~~~~~~~v~i-~~~--~~ea-- 169 (439)
.+++.|+||+|.||.+++..|+..+. .+++. ++ ..+.++..+.++.... .++.. ..| +.+.
T Consensus 12 ~k~~lVTGas~gIG~~ia~~L~~~Ga-----~Vv~~----~~~~~~~~~~~~~~i~~~g----~~~~~~~~Dv~d~~~~~ 78 (306)
T PRK07792 12 GKVAVVTGAAAGLGRAEALGLARLGA-----TVVVN----DVASALDASDVLDEIRAAG----AKAVAVAGDISQRATAD 78 (306)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEEe----cCCchhHHHHHHHHHHhcC----CeEEEEeCCCCCHHHHH
Confidence 45899999999999999999998763 25442 32 2234454555554211 11111 111 1111
Q ss_pred --------cCCCcEEEEeCCcCC
Q 013619 170 --------FEDAEWALLIGAKPR 184 (439)
Q Consensus 170 --------l~dADiVIitag~~~ 184 (439)
+...|++|..+|...
T Consensus 79 ~~~~~~~~~g~iD~li~nAG~~~ 101 (306)
T PRK07792 79 ELVATAVGLGGLDIVVNNAGITR 101 (306)
T ss_pred HHHHHHHHhCCCCEEEECCCCCC
Confidence 346899999998754
No 497
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=84.57 E-value=2.9 Score=42.85 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~ 120 (439)
++||+|.|+ |.||..+...|...+
T Consensus 1 ~~~IaInGf-GrIGR~~lr~l~e~~ 24 (336)
T PRK13535 1 TIRVAINGF-GRIGRNVLRALYESG 24 (336)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhcC
Confidence 479999997 999999999988765
No 498
>PRK07791 short chain dehydrogenase; Provisional
Probab=84.50 E-value=20 Score=35.10 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC
Q 013619 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (439)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (439)
...+.|+||++.||.+++..|+..+.
T Consensus 6 ~k~~lITGas~GIG~aia~~la~~G~ 31 (286)
T PRK07791 6 GRVVIVTGAGGGIGRAHALAFAAEGA 31 (286)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 35799999999999999999998663
No 499
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=84.38 E-value=2.3 Score=42.75 Aligned_cols=30 Identities=33% Similarity=0.297 Sum_probs=24.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCCCCceEEEe
Q 013619 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL 132 (439)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l 132 (439)
||.|||+ |.+|+.++..|+..++ + .|.|.|
T Consensus 1 kVlVVGa-GGlG~eilknLal~Gv-g---~I~IvD 30 (291)
T cd01488 1 KILVIGA-GGLGCELLKNLALSGF-R---NIHVID 30 (291)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCC-C---eEEEEC
Confidence 6899995 9999999999999886 2 255544
No 500
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=84.36 E-value=1.7 Score=40.10 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=38.3
Q ss_pred CCCEEEEEcCCCc-hHHHHHHHHHhcCCCCCCCceEEEecccccchhhHHHHHHHHhcccCCCCccEEEecCcccccCCC
Q 013619 95 KMVNIAVSGAAGM-IANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (439)
Q Consensus 95 ~~~KI~IIGA~G~-VG~~la~~L~~~~l~~~~~~I~L~l~~~d~~~e~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (439)
+..||.|||+ |. +|..++..|...+. .+.+ ++++. .+.++.+++|
T Consensus 43 ~gk~vlViG~-G~~~G~~~a~~L~~~g~-----~V~v----~~r~~------------------------~~l~~~l~~a 88 (168)
T cd01080 43 AGKKVVVVGR-SNIVGKPLAALLLNRNA-----TVTV----CHSKT------------------------KNLKEHTKQA 88 (168)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhhCCC-----EEEE----EECCc------------------------hhHHHHHhhC
Confidence 3469999996 86 58889998887653 1444 34321 1345778999
Q ss_pred cEEEEeCCcC
Q 013619 174 EWALLIGAKP 183 (439)
Q Consensus 174 DiVIitag~~ 183 (439)
|+||.+.+.|
T Consensus 89 DiVIsat~~~ 98 (168)
T cd01080 89 DIVIVAVGKP 98 (168)
T ss_pred CEEEEcCCCC
Confidence 9999987765
Done!